Psyllid ID: psy9319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MEGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPVYKWKFERKK
Secondary Structure (PSIPRED)
ccccccEEEEEEcccccEEEEEEccccccccccEEEEcccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEEccccccEEEccccccccccccccEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHccccEEccccccccEEEEEccHHHHccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEEcccccccEEEEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccccccEEEcccccEEEEcccccEEEEEccccccHHHHccccccEEEEEEccccccHHHHHHHHHHHHccccHHHEEEEEEEccccEEEEEccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHEEccccccccEEEEEccHHHHHcccHHHHHcccHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
megqnfipllglnprpslyqssvltdispkqldfkFKEHHKLEEQNilkahpvtciciefdptgkyfavGSKDALVSLWDAAELTCIrtfqrldwpvraisfshdgaliasgsedltidiahvesgkkVYDICIQAAtftvawhpKQYLLAYAcddkydrkqdcgnlkvfgflpepikkrkrggtmSSWVKAAKVNQkthrerhqpedrrklgllekkkDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINArlvdgehfenpkpeaedsEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANqienthvffvdneaeakkFDVVKQLKtlpellprktnrlkveDIAEMSVAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFlsekpklvkpgtpdsapvykwkferkk
Flexible Loop (DISEMBL)
MEGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATftvawhpkQYLLAYACDDKYDRKQDCGNLkvfgflpepikkrkrggtmsswVKAAkvnqkthrerhqpedrrklgllekkkdyrvradhfnkkkktlqiLKKKALEKNEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLmdtqdakyvssrrvmEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVkqlktlpellprktnrlkvedIAEMSvaqhvkskmkLVKARQAeklgkrlerernlgvverklfvqrflsekpklvkpgtpdsapvykwkferkk
Low Complexity Region (SEG)
MEGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNkkkktlqilkkkalEKNEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPVYKWKFERKK
Disordered region (IsUnstruct)
******IPLLGL*****LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPI****************************************************************************MI************************************************IKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPR****LKV***********************************NLGVVERKLFVQRFL**************************
Disordered Region (DISOPRED)
MEGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINA*********************KLLMDTQDAKYVSSRRVMEK*********************THVFFVDNEAEAKKFDVVKQLKTLPELLPRKTN*****************************************GVV***************************YKWKFERK*
Disordered Region (DISEMBL)
MEGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKK*********WVKAA*************EDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINARLVDGEHFE*************LLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPVYKWKFERKK
Disordered Region (DISPRO)
***QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPVYKWKFER**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPVYKWKFERKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q29RH4	351	THO complex subunit 3 OS=	yes	N/A	0.289	0.356	0.617	7e-44
Q96J01	351	THO complex subunit 3 OS=	yes	N/A	0.289	0.356	0.617	8e-44
Q8VE80	351	THO complex subunit 3 OS=	yes	N/A	0.289	0.356	0.617	9e-44
Q9CZJ1	253	Probable U3 small nucleol	no	N/A	0.564	0.964	0.418	1e-40
Q9Y3A2	253	Probable U3 small nucleol	no	N/A	0.567	0.968	0.416	1e-40
Q9W3C0	237	Probable U3 small nucleol	no	N/A	0.534	0.974	0.426	9e-40
Q8R5K5	253	Probable U3 small nucleol	no	N/A	0.567	0.968	0.408	3e-39
Q09462	262	Probable U3 small nucleol	yes	N/A	0.567	0.935	0.420	5e-39
Q9USL1	309	Uncharacterized WD repeat	no	N/A	0.277	0.388	0.424	1e-25
Q10106	249	Probable U3 small nucleol	yes	N/A	0.567	0.983	0.362	1e-25

>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1

 Score =  178 bits (452), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 3/128 (2%)

Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +SFSHDG 
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGK 279

Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD---KYDRKQDC 164
           ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDD   KYD  ++ 
Sbjct: 280 MLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREA 339

Query: 165 GNLKVFGF 172
           G +K+FG 
Sbjct: 340 GTVKLFGL 347

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.
Bos taurus (taxid: 9913)

>sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1

 Score =  178 bits (451), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 3/128 (2%)

Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +SFSHDG 
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGK 279

Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD---KYDRKQDC 164
           ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDD   KYD  ++ 
Sbjct: 280 MLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREA 339

Query: 165 GNLKVFGF 172
           G +K+FG 
Sbjct: 340 GTVKLFGL 347

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4.

Homo sapiens (taxid: 9606)

>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1

 Score =  178 bits (451), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 3/128 (2%)

Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +SFSHDG 
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGK 279

Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD---KYDRKQDC 164
           ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDD   KYD  ++ 
Sbjct: 280 MLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREA 339

Query: 165 GNLKVFGF 172
           G +K+FG 
Sbjct: 340 GTVKLFGL 347

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Mus musculus (taxid: 10090)

>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/253 (41%), Positives = 161/253 (63%), Gaps = 9/253 (3%)

Query: 187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKN 246
           +++ KAAK  Q+ HRER QP  R++LGLLEKKKDY++RA+ ++KK+  L+ L+KKALEKN
Sbjct: 3   AAFRKAAKTRQREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKN 62

Query: 247 EDEFHTHMINARLVDGEH-FENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
            DEF+  M  A+L DG H F+  K E   + EQ  LM TQD KY+  +RV E +KIE++K
Sbjct: 63  PDEFYYKMTRAKLQDGVHIFKENKEEV--TAEQLKLMRTQDIKYIEMKRVAEAKKIERLK 120

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV- 364
           +  H++D   + +  HVFF D + E ++FDV   L+T PEL+ R  NR ++E + +  V 
Sbjct: 121 SELHLLDFQGKQQKKHVFFFDTKKEVERFDVATHLQTAPELVDRVYNRPRIETLQKERVK 180

Query: 365 -AQHVKSKMKLVKARQAEK--LGKRLERERNLGVVERKLFVQRFLSEKPK--LVKPGTPD 419
            A       ++ K RQ +   L +R+ERE+ L VV +K+  ++ L +K +   VK  T +
Sbjct: 181 GATPQTGLKRIAKERQKQYDCLTQRIEREKQLFVVAQKIQTRKDLMDKTQKVKVKKETVN 240

Query: 420 SAPVYKWKFERKK 432
           S  +Y+++  RK+
Sbjct: 241 SPAIYRFQTRRKR 253

Involved in nucleolar processing of pre-18S ribosomal RNA.

Mus musculus (taxid: 10090)

>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11L PE=1 SV=2

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/252 (41%), Positives = 158/252 (62%), Gaps = 7/252 (2%)

Query: 187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKN 246
           +++ KAAK  Q+ HRER QP  R+ LGLLEKKKDY++RAD + KK++ L+ L+KKALEKN
Sbjct: 3   AAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKN 62

Query: 247 EDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKA 306
            DEF+  M   +L DG H      E E + EQ  LM TQD KY+  +RV E +KIE++K+
Sbjct: 63  PDEFYYKMTRVKLQDGVHIIKETKE-EVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKS 121

Query: 307 GNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV-- 364
             H++D   + +N HVFF D + E ++FDV   L+T PEL+ R  NR ++E + +  V  
Sbjct: 122 ELHLLDFQGKQQNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKG 181

Query: 365 AQHVKSKMKLVKARQAEK--LGKRLERERNLGVVERKLFVQRFLSEKPK--LVKPGTPDS 420
             +     ++ K RQ +   L +R+ERE+ L V+ +K+  ++ L +K +   VK  T +S
Sbjct: 182 VTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNS 241

Query: 421 APVYKWKFERKK 432
             +YK++  RK+
Sbjct: 242 PAIYKFQSRRKR 253

Involved in nucleolar processing of pre-18S ribosomal RNA.

Homo sapiens (taxid: 9606)

>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster GN=CG1789 PE=2 SV=1

 Score =  164 bits (416), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/253 (42%), Positives = 153/253 (60%), Gaps = 22/253 (8%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW  A+K NQK HRERHQPE R+ LG LEKKKDY+ RA    KK+KTL++L ++A  K
Sbjct: 1   MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+ HMIN++L + EH E    + E + EQ  LM TQD KYV  +R ME++KIE++K
Sbjct: 61  NPDEFYHHMINSKLSNDEHHEKDTKD-EHTPEQLALMQTQDLKYVVMKRTMERKKIERLK 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           A    +DA     N  + F  +E    + D+ + L             LK +D  E    
Sbjct: 120 ASLVDVDAIKGAANKRIKF--DEDGYMELDMGEWL-------------LKHDDEEEEEEK 164

Query: 366 QHVKSKMK--LVKARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTPD 419
           +      +   +K ++  +L KR +RER LG+V++K+ ++  L +    KP+ +KPGT D
Sbjct: 165 KKKSKTTEPNPIKQQRINELKKREQRERELGIVQQKIQLKNTLKQPRLLKPRKIKPGTKD 224

Query: 420 SAPVYKWKFERKK 432
           SAPVYK+++ERKK
Sbjct: 225 SAPVYKFRYERKK 237

Involved in nucleolar processing of pre-18S ribosomal RNA.

Drosophila melanogaster (taxid: 7227)

>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus GN=Utp11l PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 157/252 (62%), Gaps = 7/252 (2%)

Query: 187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKN 246
           +++ KA K  Q+ +RER QP  R+ LGLLEKKKDY++RAD + KK++ L+ L+KKALEKN
Sbjct: 3   AAFRKAVKSRQREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKN 62

Query: 247 EDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKA 306
            DEF+  M   +L DG H      E E + EQ  LM TQD KY+  +RV E +KIE++K+
Sbjct: 63  PDEFYYKMTRVKLQDGVHIIKETKE-EVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKS 121

Query: 307 GNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV-- 364
             H++D   + +N HVFF D + E ++FDV   L+T PEL+ R  NR ++E + +  V  
Sbjct: 122 ELHLLDFQGKQQNRHVFFFDTKKEVEQFDVAAHLQTAPELVDRVFNRPRIETLQKEKVKG 181

Query: 365 AQHVKSKMKLVKARQAEK--LGKRLERERNLGVVERKLFVQRFLSEKPK--LVKPGTPDS 420
             +     ++ K RQ +   L +R+ERE+ L V+ +K+  ++ L +K +   VK  T +S
Sbjct: 182 VTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNS 241

Query: 421 APVYKWKFERKK 432
             +YK++  RK+
Sbjct: 242 PAIYKFQSRRKR 253

Involved in nucleolar processing of pre-18S ribosomal RNA.

Rattus norvegicus (taxid: 10116)

>sp|Q09462|UTP11_CAEEL Probable U3 small nucleolar RNA-associated protein 11 OS=Caenorhabditis elegans GN=C16C10.2 PE=3 SV=1

 Score =  162 bits (410), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 157/264 (59%), Gaps = 19/264 (7%)

Query: 186 MSSWVKAAK--VNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKAL 243
           MSS V  +K    Q+ HRER QPE RRK G LEKKKDY++RA+ + KK+ T++ LKK A+
Sbjct: 1   MSSLVSISKKLSGQRQHRERSQPEARRKYGELEKKKDYKLRAEDYQKKRDTIKKLKKSAM 60

Query: 244 EKNEDEFHTHMINARL-VDGEHFENPKPEAEDSEE--QKLLMDTQDAKYVSSRRVMEKRK 300
           +KN+DE+H HM+N+    DG HF + K EAE++E   QK L   +D +YV  +   EK+K
Sbjct: 61  DKNQDEYHHHMVNSETWADGRHF-DKKTEAEETETQIQKKLGSLKDLEYVKFKLNEEKKK 119

Query: 301 IEKIKAGNHMIDAA-NQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDI 359
           I+++K   H  D++ N   NTH  FVD ++EAK FD      T   +L R+ NRLK ED 
Sbjct: 120 IDEMKGELHFADSSLNGKGNTHTVFVDTDSEAKSFDPRVYFDTTTSMLSRQFNRLKNEDF 179

Query: 360 AEMSV-----AQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSE------ 408
              ++      + V+   ++ + R  E L KR+ER + L VV  KL +++ L+       
Sbjct: 180 QNKTIIGAGTKEQVRKADRVRRTRYNE-LIKRVERAKELQVVVDKLELKKQLAAGSKSEL 238

Query: 409 KPKLVKPGTPDSAPVYKWKFERKK 432
           KP+ VK      A VYKW +ERKK
Sbjct: 239 KPQKVKKAKAMRAAVYKWTYERKK 262

Involved in nucleolar processing of pre-18S ribosomal RNA.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18B5.10c PE=4 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 5/125 (4%)

Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           +KAH   C CIEF P  ++ A+G  DA+ SLWD  EL C R+  R+D+P+R +SFS+D  
Sbjct: 190 IKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFSYDSR 249

Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNL 167
            +ASGSED  +DIA  ++G +++ I        VAWHP +++LAYA  +      +   L
Sbjct: 250 YLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEP-----NSSGL 304

Query: 168 KVFGF 172
           K+FG 
Sbjct: 305 KIFGL 309

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18G6.06 PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 138/251 (54%), Gaps = 6/251 (2%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSS  K A   +K HRER QP +RRK GLLEK+KDY  RA  +  K+K L+ L++KALE+
Sbjct: 1   MSSSFKNA-GQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALER 59

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+  M + +  +G   E  +    D +  K+L  TQD  ++   R +E+ KI+ ++
Sbjct: 60  NPDEFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILK-TQDIGWIRHHRNVERAKIDHLE 118

Query: 306 AGNHMIDA-ANQIEN-THVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMS 363
              H + A  N+ E+  H  FVDN  EAK F+  +  +T  +L+ R  NR+K + I    
Sbjct: 119 QQMHTVGAHRNKNESRKHTIFVDNVKEAKSFNPAEFFQTTDDLVGRTENRVKKDQIENNE 178

Query: 364 VA-QHVKSKM-KLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSA 421
           +  Q    K+   +K + A +L  R +R++ L   E ++ + R L  K    K    +  
Sbjct: 179 LTNQPFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGRQKKKVVNGK 238

Query: 422 PVYKWKFERKK 432
           PVYKW+ ERK+
Sbjct: 239 PVYKWRNERKR 249

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
242013763	252	conserved hypothetical protein [Pediculu	0.569	0.976	0.501	1e-59
332024891	252	Putative U3 small nucleolar RNA-associat	0.567	0.972	0.507	8e-59
307184583	253	Probable U3 small nucleolar RNA-associat	0.569	0.972	0.523	1e-58
380026299	253	PREDICTED: probable U3 small nucleolar R	0.569	0.972	0.488	2e-58
110751074	253	PREDICTED: probable U3 small nucleolar R	0.569	0.972	0.484	2e-58
340710527	253	PREDICTED: probable U3 small nucleolar R	0.569	0.972	0.484	3e-58
357621041	252	UTP11-like U3 small nucleolar ribonucleo	0.567	0.972	0.5	4e-57
289742691	262	putative U3 small nucleolar RNA-associat	0.571	0.942	0.473	2e-56
307203273	252	Probable U3 small nucleolar RNA-associat	0.567	0.972	0.5	5e-55
156538100	253	PREDICTED: probable U3 small nucleolar R	0.569	0.972	0.503	7e-55

>gi|242013763|ref|XP_002427570.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511985|gb|EEB14832.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 181/253 (71%), Gaps = 7/253 (2%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK +QK HRERHQPE+R  LGLLEKKKDY++RA+ +N+KK+TL++L+K+AL K
Sbjct: 1   MSSWKKAAKSHQKNHRERHQPENRAHLGLLEKKKDYKLRAEDYNRKKRTLRLLRKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+ HMIN+++ DG H E  K + E + EQ +LM+TQD KY++ +R ME RKIE ++
Sbjct: 61  NPDEFYFHMINSKIEDGIHHELEKDD-EHTPEQLMLMNTQDLKYITMKRTMEMRKIENLQ 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           A  HM+D AN   N HVFFVD++ EAK FDVVK L T P LL ++ NR+K++++ +M + 
Sbjct: 120 AQLHMLDVANDTPNEHVFFVDSKEEAKNFDVVKHLDTHPSLLDQRINRIKLDELRKMKLN 179

Query: 366 QHVKSKMKLV--KARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTPD 419
              +S   +   K +  +KL KR+ERE+ LG++++KL ++R L      +PK ++  T  
Sbjct: 180 IDEESIRNIANQKKKMYQKLAKRVEREKELGIIQQKLEIKRHLIASKHLQPKKIRNATKK 239

Query: 420 SAPVYKWKFERKK 432
           SA +YK+  ERKK
Sbjct: 240 SAAIYKFSSERKK 252

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024891|gb|EGI65079.1| Putative U3 small nucleolar RNA-associated protein 11 [Acromyrmex echinatior]

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 129/254 (50%), Positives = 184/254 (72%), Gaps = 9/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK++QKTHRERHQPE R+ LGLLEKKKDY +RA  F +K+ T+++L+K+AL K
Sbjct: 1   MSSWKKAAKMSQKTHRERHQPEARKHLGLLEKKKDYIIRARDFQEKRATIKLLRKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEFH HMIN+++V+G H E  K E + + EQ  LM+TQD +YV+ +R +E +KI+K++
Sbjct: 61  NPDEFHFHMINSKVVNGVHREKDK-EDQHTPEQIKLMETQDLRYVAYKRNIEAKKIDKLQ 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           +  HMIDAAN+ +N H+FF+D++ E K F++ K+L T P LL R+TNR  +  I  M + 
Sbjct: 120 SQLHMIDAANETQNQHIFFLDDD-EMKNFNLAKKLDTHPALLSRRTNRPTLSAIKNMKLP 178

Query: 366 QH---VKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTP 418
           +      +K +  K    ++L KR++RER L VV++KL V+R L +    KPKLVK G+ 
Sbjct: 179 ELDNITIAKFEQKKHMTYKELEKRIDRERELIVVQQKLEVRRALKDKKVRKPKLVKSGSK 238

Query: 419 DSAPVYKWKFERKK 432
           D+AP+Y+WKFERK+
Sbjct: 239 DAAPIYRWKFERKR 252

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184583|gb|EFN70923.1| Probable U3 small nucleolar RNA-associated protein 11 [Camponotus floridanus]

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/254 (52%), Positives = 183/254 (72%), Gaps = 8/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KA K++QKTHRERHQPE R+ LGLLEKKKDY  RA  F +K+ T+++L+K+AL K
Sbjct: 1   MSSWKKAGKMSQKTHRERHQPETRKHLGLLEKKKDYISRARDFQEKQATIKLLRKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEFH HMIN++LV+G H E  K +   SE+ K LM+TQD +YV+ +R +E +KI+K++
Sbjct: 61  NPDEFHFHMINSQLVNGVHREKDKEDHHTSEQIK-LMETQDIRYVAYKRNIEAKKIDKLQ 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           +  HMID AN+++N H FFVD+  E K FD+ K+L T P LL R+TNR K+  I +M + 
Sbjct: 120 SQLHMIDVANEMQNQHTFFVDDSTEMKNFDLAKKLDTHPALLSRRTNRPKLSAIKDMKLP 179

Query: 366 Q---HVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFL----SEKPKLVKPGTP 418
           +      SK++  K    ++L KR+ RER L +VE+KL ++R L     +KPKLVKPG+ 
Sbjct: 180 ELDDKTISKIEQKKHMAYKQLEKRIHRERELTIVEQKLEMRRALKDKKIKKPKLVKPGSK 239

Query: 419 DSAPVYKWKFERKK 432
           D+AP+YKWKFERK+
Sbjct: 240 DNAPIYKWKFERKR 253

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026299|ref|XP_003696889.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like isoform 1 [Apis florea] gi|380026301|ref|XP_003696890.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like isoform 2 [Apis florea]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/254 (48%), Positives = 181/254 (71%), Gaps = 8/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK  QKTHRERHQPE+R+ LGLLEKKKDY  RA  + +K++TL++L+K+AL K
Sbjct: 1   MSSWKKAAKATQKTHRERHQPENRKHLGLLEKKKDYVARAKDYQEKQQTLKLLRKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+ HMIN+++  G H E  K   E + EQ  LM+TQD +Y++ +R +E +KI++++
Sbjct: 61  NPDEFYFHMINSKIHGGIHKEKRK-HKEYTPEQIHLMETQDIRYIAYKRNLEAKKIDRLQ 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           +  HMIDAAN+ +N H+FFVD   E K FD+ K+L T P LL R+TNR K+  + +M + 
Sbjct: 120 SELHMIDAANETKNKHIFFVDGSEEIKNFDIAKKLDTHPALLSRRTNRPKLSRLKDMKLP 179

Query: 366 QHVKSKMKLV---KARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTP 418
           +  ++ +K +   K +  ++L KR+ RE+ L ++++KL ++R L +    KPKLVK G+ 
Sbjct: 180 EIDENSLKRIERSKHKAYQELHKRINREKELTILQQKLEIERALKDKKVTKPKLVKKGSK 239

Query: 419 DSAPVYKWKFERKK 432
           DSAPVYKW +ERK+
Sbjct: 240 DSAPVYKWTYERKR 253

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110751074|ref|XP_001120245.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Apis mellifera]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/254 (48%), Positives = 181/254 (71%), Gaps = 8/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK  QKTHRERHQPE+R+ LGLLEKKKDY  RA  + +K+KTL++L+K+AL K
Sbjct: 1   MSSWKKAAKATQKTHRERHQPENRKHLGLLEKKKDYVARAKDYQEKQKTLKLLRKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+ HMIN+++  G H E  K   E + EQ  LM+TQD +Y++ +R +E +KI++++
Sbjct: 61  NPDEFYFHMINSKIHGGIHKEKRK-HKEYTPEQIHLMETQDIRYIAYKRNLEAKKIDRLQ 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           +  HMIDAAN+ +N H+FFVD   E K FD+ K+L T P LL R+TNR K+  + +M + 
Sbjct: 120 SELHMIDAANETKNKHIFFVDGSKEIKNFDIAKKLDTHPALLSRRTNRPKLSRLKDMKLP 179

Query: 366 QHVKSKMKLV---KARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTP 418
           +  ++ +K +   K +  ++L KR+ RE+ L ++++KL +++ L +    KPKLVK G+ 
Sbjct: 180 EIDENSLKRIERSKHKAYQELQKRINREKELTIIQQKLEIEKALKDKKVNKPKLVKKGSK 239

Query: 419 DSAPVYKWKFERKK 432
           DSAP+YKW +ERK+
Sbjct: 240 DSAPIYKWTYERKR 253

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710527|ref|XP_003393839.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Bombus terrestris]

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/254 (48%), Positives = 178/254 (70%), Gaps = 8/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK  QKTHRERHQPE R+ LGLLEKKKDY  RA ++ +K++TL++L+++AL K
Sbjct: 1   MSSWKKAAKATQKTHRERHQPETRKHLGLLEKKKDYIARAKNYQEKQQTLKLLRRRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+ HMIN+++  G H E  K +   + EQ  LM+TQD +Y++ +R +E +KI K++
Sbjct: 61  NPDEFYFHMINSKITGGVHREKKKCKNH-TPEQIQLMETQDIRYIAHKRNIEAKKINKLQ 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           +  HMIDAAN+ +N H+FFVD+  E K FD+ K+L T P L+ R+TNR K+  + +M + 
Sbjct: 120 SQLHMIDAANETKNKHIFFVDDSKEVKNFDLAKKLDTHPALISRRTNRPKLSKLKDMKLP 179

Query: 366 QHVKSKMKLV---KARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTP 418
              ++ ++ +   K     +L KR+ERER L ++++KL +QR L +    KPKLV   T 
Sbjct: 180 DIDETSLRKIESDKHNAYNELQKRIERERELTIIQQKLEMQRALKDKKITKPKLVSKETK 239

Query: 419 DSAPVYKWKFERKK 432
           D+AP+YKWKFERK+
Sbjct: 240 DAAPIYKWKFERKR 253

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621041|gb|EHJ73018.1| UTP11-like U3 small nucleolar ribonucleoprotein [Danaus plexippus]

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 127/254 (50%), Positives = 182/254 (71%), Gaps = 9/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK NQKTH+ERHQPE R+ LGLLEKKKDY+ RA+ +++K  TL++L+K+ L+K
Sbjct: 1   MSSWKKAAKANQKTHKERHQPEARKHLGLLEKKKDYKKRAEDYHEKGATLKLLRKRTLDK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+ HMIN+R+ DGEH E  K E E + EQ  LM TQD KY++ +R +E R+I++++
Sbjct: 61  NPDEFYFHMINSRVKDGEHHELEK-EDEVTSEQVKLMQTQDLKYINMKRTIESRRIQRMQ 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMS-- 363
           +  HM + A+   NTHVFFV+ E EAK FD+ K+L T P L+ RK+NR ++ D+ +++  
Sbjct: 120 SQLHMTNVADSTPNTHVFFVE-EDEAKNFDLAKRLDTHPSLINRKSNRPRLSDLDKITLP 178

Query: 364 -VAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTP 418
            V     +  K +K R  ++L KR++RE++L VV++KL ++R L +    KPK VK GT 
Sbjct: 179 EVNDEFVNSTKKMKERTYKELSKRIDREKHLTVVQQKLEIKRHLQDAKVMKPKRVKRGTA 238

Query: 419 DSAPVYKWKFERKK 432
            SAPVYK+++ RKK
Sbjct: 239 VSAPVYKFQYMRKK 252

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742691|gb|ADD20093.1| putative U3 small nucleolar RNA-associated protein 11 [Glossina morsitans morsitans]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/262 (47%), Positives = 182/262 (69%), Gaps = 15/262 (5%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KA+K NQK HRERHQPE R+ LGLLEKKKDY+ RA    +K KTL +L K+AL K
Sbjct: 1   MSSWRKASKSNQKVHRERHQPESRKHLGLLEKKKDYQKRARDAERKAKTLHLLHKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAED-SEEQKLLMDTQDAKYVSSRRVMEKRKIEKI 304
           N DEF+ HMI +++ DGEH E  + E +D S+EQ  LM TQD KYV+ +R +E +KI+++
Sbjct: 61  NPDEFYHHMIRSKIKDGEHHEQDESEKDDHSKEQIALMQTQDLKYVTMKRTIETKKIKRL 120

Query: 305 KAGNHMIDAANQIENTHVFFVDNE-------AEAKKFDVVKQLKTLPELLPRKTNRLKVE 357
           ++  HMID AN + NTH+FFV+++       AE  +FD+ K+L T P L+ RKTNR K+ 
Sbjct: 121 QSQLHMIDFANTVPNTHIFFVEDDSKNDGTVAEFTEFDLAKRLDTHPNLIERKTNRPKLS 180

Query: 358 DIAEMSVAQ---HVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLS----EKP 410
           D+ ++++ +   +   K   +K +  ++L KR+ERE+ L +V++KL +++ L     +KP
Sbjct: 181 DLDKINLTELNPYEIKKANALKQQAYQELTKRIEREKELAIVQQKLAIKKALQQTRLQKP 240

Query: 411 KLVKPGTPDSAPVYKWKFERKK 432
           K ++ GT D+ PVY++K+ERKK
Sbjct: 241 KKIQKGTKDAPPVYEFKYERKK 262

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203273|gb|EFN82428.1| Probable U3 small nucleolar RNA-associated protein 11 [Harpegnathos saltator]

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/254 (50%), Positives = 172/254 (67%), Gaps = 9/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK  QKTH ERHQPE R+ LGLLEKKKDY  RA  F +K+ T+++L+K+AL K
Sbjct: 1   MSSWKKAAKAGQKTHWERHQPEVRKHLGLLEKKKDYVARAKDFQEKRATIKLLRKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEFH HMIN++L +G H E  K EAE + EQ  LM+TQD KY+  R+ +E +KI K++
Sbjct: 61  NPDEFHFHMINSKLENGIHRE--KKEAEHTPEQIKLMETQDMKYIMYRKHIETKKINKLQ 118

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
              HM+D AN+  N H+FF+D+  EAK FD+ K+L T P LL R+ NR ++ D+++M V 
Sbjct: 119 NELHMLDTANETPNQHIFFMDDGKEAKNFDLAKRLDTHPALLSRRINRPRMSDLSKMQVP 178

Query: 366 ---QHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFL----SEKPKLVKPGTP 418
              +   +K++         L KRL+RER L +V++KL +   L     +KPK V PGT 
Sbjct: 179 ELDEKTLAKLQQKNHMNYTLLAKRLDRERELTIVQQKLEMCSALKDKKIKKPKCVMPGTK 238

Query: 419 DSAPVYKWKFERKK 432
            SAP+YKWK+ERK+
Sbjct: 239 HSAPIYKWKYERKR 252

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538100|ref|XP_001608149.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Nasonia vitripennis]

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/254 (50%), Positives = 178/254 (70%), Gaps = 8/254 (3%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MSSW KAAK  QKTHRERHQ E R+ LGLLEKKKDY +RA  +N+K+ TL++L+K+AL K
Sbjct: 1   MSSWKKAAKSTQKTHRERHQLESRKHLGLLEKKKDYVLRARDYNEKQATLKLLRKRALNK 60

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DEF+ HMIN+++ +G H E  K E + SE+Q  LM+TQD KYV+ +R +E +K+EK+ 
Sbjct: 61  NPDEFYFHMINSQVENGVHREKEKDE-DYSEDQIKLMETQDLKYVAHKRNLETKKVEKLH 119

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
           +  HMIDAAN+I N H+FFVD+  EAK FD+ ++L T P L+ R+TNR K++ + +M + 
Sbjct: 120 SNLHMIDAANEIPNKHIFFVDDGEEAKDFDIAEKLNTHPALVGRRTNRPKLDSLQKMKLP 179

Query: 366 ---QHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFL----SEKPKLVKPGTP 418
              +    KM+  K     +L KR++RE  L VV++ L ++R L      KPK VK G+ 
Sbjct: 180 DFDEKTLEKMEQRKHMAYTELSKRVDREHELTVVQQVLEIKRALKDKKVTKPKKVKSGSR 239

Query: 419 DSAPVYKWKFERKK 432
           D AP+YKWK+ERK+
Sbjct: 240 DGAPIYKWKYERKR 253

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
FB|FBgn0037569	320	tex "tex" [Drosophila melanoga	0.303	0.409	0.681	1.4e-46
ZFIN|ZDB-GENE-040808-14	322	thoc3 "THO complex 3" [Danio r	0.291	0.391	0.638	9.3e-43
UNIPROTKB|E1BU24	253	UTP11L "Uncharacterized protei	0.555	0.948	0.405	5.2e-42
UNIPROTKB|E1BDF6	351	E1BDF6 "Uncharacterized protei	0.307	0.378	0.598	6.6e-42
UNIPROTKB|Q29RH4	351	THOC3 "THO complex subunit 3"	0.307	0.378	0.598	6.6e-42
UNIPROTKB|E2RC43	351	THOC3 "Uncharacterized protein	0.307	0.378	0.598	6.6e-42
UNIPROTKB|Q96J01	351	THOC3 "THO complex subunit 3"	0.307	0.378	0.598	6.6e-42
UNIPROTKB|F1S386	351	THOC3 "Uncharacterized protein	0.307	0.378	0.598	6.6e-42
MGI|MGI:1920916	351	Thoc3 "THO complex 3" [Mus mus	0.307	0.378	0.598	6.6e-42
RGD|1311669	351	Thoc3 "THO complex 3" [Rattus	0.307	0.378	0.598	6.6e-42

FB|FBgn0037569 tex "tex" [Drosophila melanogaster (taxid:7227)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 90/132 (68%), Positives = 104/132 (78%)

Query:    42 LEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAIS 101
             LE Q  LKAHP  CICIEF PTGKYFA GS DA VSLWDA EL C+R   RL+WPVR IS
Sbjct:   187 LEHQMTLKAHPANCICIEFGPTGKYFATGSADAQVSLWDANELACLRMISRLEWPVRTIS 246

Query:   102 FSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK-YDR 160
             FSHD  +IA  SEDL IDIA  E+G++V DI + A+TFTVAWHPKQYLLAYACD+K  DR
Sbjct:   247 FSHDERMIALASEDLIIDIAFTETGERVTDILVDASTFTVAWHPKQYLLAYACDEKDNDR 306

Query:   161 KQDCGNLKVFGF 172
             ++D GN+K++GF
Sbjct:   307 RRDAGNVKIYGF 318

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040808-14 thoc3 "THO complex 3" [Danio rerio (taxid:7955)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 83/130 (63%), Positives = 102/130 (78%)

Query:    48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
             + AHP  CICI+FDPTGKYFA GS DALVSLW+  EL C+R F RLDWPVR +SFSHDG 
Sbjct:   191 INAHPSNCICIKFDPTGKYFATGSADALVSLWNVEELVCVRCFSRLDWPVRTLSFSHDGK 250

Query:   108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK---YDRKQDC 164
             ++AS SED  IDIA VE+G+K+++I  ++ TFTVAWHPK+ LLAYACDDK   YD  ++ 
Sbjct:   251 MLASASEDHFIDIAEVETGEKLWEIQCESPTFTVAWHPKRPLLAYACDDKEGKYDSNREA 310

Query:   165 GNLKVFGFLP 174
             G +K+FG LP
Sbjct:   311 GTVKLFG-LP 319

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BU24 UTP11L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 101/249 (40%), Positives = 149/249 (59%)

Query:   191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNXXXXXXXXXXXXXXEKNEDEF 250
             KAAK  Q+ HRER QP  R+KLGLLEKKKDYR+RA  ++              +KN DEF
Sbjct:     7 KAAKSRQRQHRERAQPACRKKLGLLEKKKDYRLRAQDYHKKQNALRALQKKALDKNPDEF 66

Query:   251 HTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHM 310
             +  MI  +L DG H    +PE E + EQ  LM TQD KYV  +RV E +KIE++K+  H+
Sbjct:    67 YFKMIRTQLKDGVHVIK-QPEDEVTPEQMKLMKTQDLKYVEMKRVAEAKKIERLKSELHL 125

Query:   311 IDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNR-----LKVEDIAEMSVA 365
             +D   +  N H FF D + E ++FD+   L T+PEL+ R  NR     L+ E +   +  
Sbjct:   126 LDVEGKQPNKHTFFFDTKKEVQEFDIATHLNTVPELVDRVYNRPTIATLQKETVKGATDP 185

Query:   366 QHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKP-KL-VKPGTPDSAPV 423
              H+K K+   +  Q + L +R+ERE+++ V+ +K+  ++ L +K  K+ VK  T +S  +
Sbjct:   186 VHLK-KLDQQRKNQYDLLKQRIEREKSMFVIAQKIQTRKDLLDKTHKVKVKKETTNSPAI 244

Query:   424 YKWKFERKK 432
             YK+KF+RK+
Sbjct:   245 YKFKFQRKR 253

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

UNIPROTKB|E1BDF6 E1BDF6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query:    41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
             +L+    + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +
Sbjct:   213 ELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTL 272

Query:   101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK--- 157
             SFSHDG ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDDK   
Sbjct:   273 SFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGK 332

Query:   158 YDRKQDCGNLKVFGFLP 174
             YD  ++ G +K+FG LP
Sbjct:   333 YDSSREAGTVKLFG-LP 348

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

UNIPROTKB|Q29RH4 THOC3 "THO complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query:    41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
             +L+    + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +
Sbjct:   213 ELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTL 272

Query:   101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK--- 157
             SFSHDG ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDDK   
Sbjct:   273 SFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGK 332

Query:   158 YDRKQDCGNLKVFGFLP 174
             YD  ++ G +K+FG LP
Sbjct:   333 YDSSREAGTVKLFG-LP 348

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RC43 THOC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query:    41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
             +L+    + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +
Sbjct:   213 ELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTL 272

Query:   101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK--- 157
             SFSHDG ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDDK   
Sbjct:   273 SFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGK 332

Query:   158 YDRKQDCGNLKVFGFLP 174
             YD  ++ G +K+FG LP
Sbjct:   333 YDSSREAGTVKLFG-LP 348

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

UNIPROTKB|Q96J01 THOC3 "THO complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query:    41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
             +L+    + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +
Sbjct:   213 ELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTL 272

Query:   101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK--- 157
             SFSHDG ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDDK   
Sbjct:   273 SFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGK 332

Query:   158 YDRKQDCGNLKVFGFLP 174
             YD  ++ G +K+FG LP
Sbjct:   333 YDSSREAGTVKLFG-LP 348

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0000346 "transcription export complex" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

UNIPROTKB|F1S386 THOC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query:    41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
             +L+    + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +
Sbjct:   213 ELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTL 272

Query:   101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK--- 157
             SFSHDG ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDDK   
Sbjct:   273 SFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGK 332

Query:   158 YDRKQDCGNLKVFGFLP 174
             YD  ++ G +K+FG LP
Sbjct:   333 YDSSREAGTVKLFG-LP 348

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000346 "transcription export complex" evidence=IEA

MGI|MGI:1920916 Thoc3 "THO complex 3" [Mus musculus (taxid:10090)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query:    41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
             +L+    + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +
Sbjct:   213 ELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTL 272

Query:   101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK--- 157
             SFSHDG ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDDK   
Sbjct:   273 SFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGK 332

Query:   158 YDRKQDCGNLKVFGFLP 174
             YD  ++ G +K+FG LP
Sbjct:   333 YDSSREAGTVKLFG-LP 348

GO:0000346 "transcription export complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

RGD|1311669 Thoc3 "THO complex 3" [Rattus norvegicus (taxid:10116)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query:    41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
             +L+    + AHP  CICI+FDP GKYFA GS DALVSLWD  EL C+R F RLDWPVR +
Sbjct:   213 ELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTL 272

Query:   101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK--- 157
             SFSHDG ++AS SED  IDIA VE+G K++++  ++ TFTVAWHPK+ LLA+ACDDK   
Sbjct:   273 SFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGK 332

Query:   158 YDRKQDCGNLKVFGFLP 174
             YD  ++ G +K+FG LP
Sbjct:   333 YDSSREAGTVKLFG-LP 348

GO:0000346 "transcription export complex" evidence=IEA;ISO

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	432
pfam03998	239	pfam03998, Utp11, Utp11 protein	2e-64
COG5223	240	COG5223, COG5223, Uncharacterized conserved protei	2e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein

 Score =  206 bits (527), Expect = 2e-64
 Identities = 103/240 (42%), Positives = 148/240 (61%), Gaps = 5/240 (2%)

Query: 197 QKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMIN 256
           ++ HRER QPE R+ LGLLEKKKDY++RA  ++KK+KTL+ LK+KA E+N DEF+  MI+
Sbjct: 1   RRQHRERSQPESRKHLGLLEKKKDYKLRAKDYHKKEKTLKALKEKAAERNPDEFYFGMIS 60

Query: 257 ARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQ 316
           ++  DG H    + +   S+EQ  L+ TQD  YV ++R  E +KIEK+K   H+ D+ + 
Sbjct: 61  SKTDDGVHILKREEKEVLSKEQVKLLKTQDLNYVRTKRQAEAKKIEKLKEELHLTDSGSA 120

Query: 317 IENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMS-VAQHVKSKMKLV 375
               H+ FVD+E E K FD  +   T PELL R+ NR ++  + + S V +  K K    
Sbjct: 121 G-PKHIVFVDDEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKK 179

Query: 376 KARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVK---PGTPDSAPVYKWKFERKK 432
           K +  ++L +R ERE+ L  VE++L +QR L +K K  K       D   VYKWK ERK+
Sbjct: 180 KRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 239

>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function unknown]

 Score =  111 bits (279), Expect = 2e-28
 Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 11/249 (4%)

Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
           MS         +K HRER QP+DRRK G LEKKKDY  RA   NKK+  L+ L++KA E+
Sbjct: 1   MSLGFTKVP-QRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARER 59

Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
           N DE++ H +++   DG      + +     +   ++ TQD +    RR +E+ K     
Sbjct: 60  NPDEYY-HGMHSVKTDGGVSSIYREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCG 118

Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
                 +++      H  FVD     K+F   +  +T  EL+ R+ NRL+ + I    + 
Sbjct: 119 TQIKFEESSL-----HTIFVDMRFGQKEFIPEEFFRTTEELVVRRENRLEKDQIENNELE 173

Query: 366 QHVKSKMKL--VKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPV 423
             V S      +K + A +L  R +R++ L   E ++ + R L  K    K    +  PV
Sbjct: 174 DSVFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGG--KKKVVNGKPV 231

Query: 424 YKWKFERKK 432
           YKW+ ERK+
Sbjct: 232 YKWRNERKR 240

Length = 240

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H      +     G Y A GS D  + LWD     C+RT       V +++FS DG 
Sbjct: 47  LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106

Query: 108 LIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKY 158
           +++S S D TI +  VE+GK +  +        +VA+ P    +A +  D  
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 24/121 (19%)

Query: 48  LKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
           L+ H   V  +   F P G + A  S+D  + LWD     C+ T       V +++FS D
Sbjct: 131 LRGHTDWVNSVA--FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188

Query: 106 GALIASGSEDLTIDIAHVESGKKVYDI----CIQ------AATFTVAWHPKQYLLAYACD 155
           G  + S S D TI         K++D+    C+           +VA+ P  YLLA +  
Sbjct: 189 GEKLLSSSSDGTI---------KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA-SGS 238

Query: 156 D 156
           +
Sbjct: 239 E 239

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 48  LKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
           LK H   VTC+   F P GK  A GS D  + +WD      +RT +    PVR ++ S D
Sbjct: 5   LKGHTGGVTCVA--FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD 62

Query: 106 GALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC 164
           G  +ASGS D TI +  +E+G+ V  +    +   +VA+ P   +L+ +  DK       
Sbjct: 63  GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK------- 115

Query: 165 GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQ 197
             +KV+           RG T   WV +   + 
Sbjct: 116 -TIKVWDVETGKCLTTLRGHT--DWVNSVAFSP 145

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 48  LKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
           L  H   V  +   F P G+     S D  + LWD +   C+ T +  +  V +++FS D
Sbjct: 173 LTGHTGEVNSVA--FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230

Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYACDDK 157
           G L+ASGSED TI +  + +G+ V    +   T    ++AW P    LA    D 
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQ--TLSGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 41  KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRA 99
             E    L  H      + F P G+  +  S+D  + +WD     C+ T +   DW V +
Sbjct: 82  TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-VNS 140

Query: 100 ISFSHDGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFT--------VAWHPKQ 147
           ++FS DG  +AS S+D TI         K++D+    C+   T T        VA+ P  
Sbjct: 141 VAFSPDGTFVASSSQDGTI---------KLWDLRTGKCVA--TLTGHTGEVNSVAFSPDG 189

Query: 148 YLLAYACDDK 157
             L  +  D 
Sbjct: 190 EKLLSSSSDG 199

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 36  FKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL-TCIRTFQRLD 94
           +        ++ L  H  + +   F P G   A GS D  + LWD     + +RT     
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 95  WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY---DICIQAATFTVAWHPKQYLLA 151
             V +++FS DG L+ASGS D T+ +  +E+GK +        +    ++++ P   LL 
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 152 YACDD 156
               D
Sbjct: 345 SGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.3 bits (155), Expect = 4e-11
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 43  EEQNILKAHPVTCICIEFDPTGKYFAVGS-KDALVSLWDAAELTCIRTFQRLDWPVRAIS 101
           +    L+ H  +   + F P GK  A GS  D  + LWD      + T      PV +++
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205

Query: 102 FSHDG-ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTV-AWHPKQYLLAYACDDK 157
           FS DG  LIASGS D TI +  + +GK +       +   V ++ P   LLA    D 
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           L+ H      + F P G   A GS+D  + +WD     C++T       V ++++S DG 
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274

Query: 108 LIASGSEDLTI 118
            +ASGS D TI
Sbjct: 275 RLASGSADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 36  FKEHHKLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAA--ELTCIRTFQ 91
           +           L  H   V  +   F P GK  A GS D  V LWD    +L    T +
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVA--FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 92  RLDWPVRAISFSHDGALIASG-SEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLL 150
             + PV ++SFS DG+L+ SG S+D TI +  + +GK +  +   +   +V++ P   ++
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVV 385

Query: 151 AYACDDKYDRKQDCGNLKVFGFLPEPIKK 179
           +    D   R  D     +   L     +
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 35  KFKEHHKLEEQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRL 93
           K  +    +  + L  H      + F P G    A GS D  + LWD +    +R+    
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240

Query: 94  DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--QAATFTVAWHPKQYLLA 151
                  SFS DG+L+ASGS D TI +  + S   +        ++  +VA+ P   LLA
Sbjct: 241 HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300

Query: 152 YACDDKYDRKQDCGNLKVF 170
               D   R  D    K+ 
Sbjct: 301 SGSSDGTVRLWDLETGKLL 319

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
                + + F P G+  + GS D  V LWD +  + +R        V ++ FS DG  +A
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428

Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
           SGS D TI         +++D+       +V++ P   +LA    D 
Sbjct: 429 SGSSDNTI---------RLWDLKTS--LKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
          +    LK H      + F P G   A GS D  V +WD
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 41 KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWD 80
            E    LK H  PVT +   F P GKY A GS D  + LWD
Sbjct: 1  SGELLKTLKGHTGPVTSVA--FSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 17  SLYQSSVLTDISPKQLDFKFKEHHKLEEQN--ILKAHPVTCICIEFDPTGKYFAVGSKDA 74
               S   ++     L         L + +  +L+ H  +   I F P G+    GS D 
Sbjct: 28  LSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87

Query: 75  LVSLWDA-AELTCIRTFQ-RLDWPVRAISF-SHDGALIASGSEDL--TIDIAHVESGKKV 129
            + LWD       I++ +   D  V  ++  S DG  I   S  L  T+ +  + +  K+
Sbjct: 88  TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147

Query: 130 YDICI--QAATFTVAWHPKQYLLAYACDDK 157
                    +  ++A+ P   LLA      
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 85  TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD 131
             ++T +    PV +++FS DG  +ASGS+D TI         K++D
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTI---------KLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 9/47 (19%)

Query: 85  TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD 131
             +RT +    PV +++FS DG L+ASGS+D T+         +V+D
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTV---------RVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 43  EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
           E    L  H  +   + + P GK  A GS D  + +WD
Sbjct: 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
KOG3237|consensus	250		100.0
PF03998	243	Utp11: Utp11 protein; InterPro: IPR007144 A large	100.0
COG5223	240	Uncharacterized conserved protein [Function unknow	100.0
KOG0272|consensus	459		99.95
KOG0263|consensus	707		99.94
KOG0271|consensus	480		99.94
KOG0272|consensus	459		99.94
KOG0279|consensus	315		99.93
KOG0271|consensus	480		99.93
KOG0286|consensus	343		99.92
KOG0263|consensus	707		99.91
KOG0279|consensus	315		99.91
KOG0266|consensus	456		99.91
KOG0266|consensus	456		99.91
KOG0286|consensus	343		99.89
KOG0277|consensus	311		99.89
KOG0291|consensus	893		99.88
KOG0285|consensus	460		99.88
KOG0295|consensus	406		99.87
KOG0315|consensus	311		99.87
KOG0284|consensus	464		99.87
KOG0292|consensus	1202		99.87
KOG0284|consensus	464		99.87
KOG0265|consensus	338		99.87
KOG0273|consensus	524		99.87
KOG0295|consensus	406		99.87
KOG0285|consensus	460		99.86
KOG0645|consensus	312		99.86
PTZ00421	493	coronin; Provisional	99.86
PTZ00420	568	coronin; Provisional	99.86
PTZ00421	493	coronin; Provisional	99.86
KOG0276|consensus	794		99.86
KOG0276|consensus	794		99.85
KOG0273|consensus	524		99.85
KOG0319|consensus	775		99.84
PTZ00420	568	coronin; Provisional	99.84
KOG0269|consensus	839		99.84
KOG0292|consensus	1202		99.84
KOG0282|consensus	503		99.84
KOG0283|consensus	712		99.84
KOG0319|consensus	775		99.84
KOG0275|consensus	508		99.83
KOG0293|consensus	519		99.83
KOG0291|consensus	893		99.83
KOG0316|consensus	307		99.83
KOG0315|consensus	311		99.82
KOG0645|consensus	312		99.82
KOG0640|consensus	430		99.81
PLN00181	793	protein SPA1-RELATED; Provisional	99.81
KOG0282|consensus	503		99.81
KOG0281|consensus	499		99.8
KOG0647|consensus	347		99.79
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.79
KOG0281|consensus	499		99.79
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.79
KOG0306|consensus	888		99.79
KOG0264|consensus	422		99.79
KOG0274|consensus	537		99.78
KOG0310|consensus	487		99.78
KOG0318|consensus	603		99.77
KOG0274|consensus	537		99.77
KOG0277|consensus	311		99.77
KOG0313|consensus	423		99.77
KOG0310|consensus	487		99.77
KOG0296|consensus	399		99.77
KOG0275|consensus	508		99.77
KOG0646|consensus	476		99.76
KOG0640|consensus	430		99.76
KOG0293|consensus	519		99.76
KOG0316|consensus	307		99.75
KOG0973|consensus	942		99.75
KOG0294|consensus	362		99.75
KOG0305|consensus	484		99.75
KOG0289|consensus	506		99.75
KOG0318|consensus	603		99.75
KOG0643|consensus	327		99.75
KOG0641|consensus	350		99.75
KOG0306|consensus	888		99.74
KOG0302|consensus	440		99.74
KOG0296|consensus	399		99.74
KOG0267|consensus	825		99.74
KOG1407|consensus	313		99.74
KOG0265|consensus	338		99.73
PLN00181	793	protein SPA1-RELATED; Provisional	99.73
KOG0973|consensus	942		99.73
KOG0264|consensus	422		99.73
KOG0308|consensus	735		99.72
KOG0267|consensus	825		99.72
KOG0641|consensus	350		99.72
KOG1446|consensus	311		99.72
KOG0313|consensus	423		99.71
KOG0278|consensus	334		99.71
KOG0269|consensus	839		99.7
KOG1407|consensus	313		99.7
KOG0308|consensus	735		99.7
KOG0772|consensus	641		99.7
KOG0772|consensus	641		99.7
KOG1273|consensus	405		99.69
KOG0643|consensus	327		99.69
KOG0289|consensus	506		99.69
KOG1036|consensus	323		99.68
KOG0283|consensus	712		99.68
KOG0305|consensus	484		99.68
KOG0300|consensus	481		99.68
KOG0301|consensus	745		99.67
KOG0302|consensus	440		99.67
KOG1273|consensus	405		99.67
KOG0268|consensus	433		99.65
KOG1332|consensus	299		99.65
KOG0294|consensus	362		99.64
KOG4283|consensus	397		99.64
KOG0639|consensus	705		99.63
KOG0300|consensus	481		99.62
KOG4283|consensus	397		99.62
KOG1063|consensus	764		99.62
KOG1274|consensus	933		99.62
KOG0299|consensus	479		99.61
KOG0278|consensus	334		99.61
KOG0303|consensus	472		99.61
KOG1446|consensus	311		99.61
KOG0288|consensus	459		99.6
KOG0646|consensus	476		99.59
KOG0268|consensus	433		99.59
KOG4328|consensus	498		99.59
KOG0301|consensus	745		99.58
KOG1539|consensus	910		99.58
KOG0303|consensus	472		99.57
KOG0647|consensus	347		99.57
KOG0642|consensus	577		99.57
KOG0270|consensus	463		99.57
KOG0270|consensus	463		99.57
KOG0288|consensus	459		99.56
KOG0299|consensus	479		99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG2096|consensus	420		99.54
KOG2445|consensus	361		99.54
KOG1009|consensus	434		99.54
KOG2048|consensus	691		99.53
KOG1445|consensus	1012		99.53
KOG2096|consensus	420		99.53
KOG0639|consensus	705		99.52
KOG1274|consensus	933		99.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.5
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.48
KOG0307|consensus	1049		99.47
KOG2110|consensus	391		99.46
KOG1408|consensus	1080		99.46
KOG0321|consensus	720		99.46
KOG1332|consensus	299		99.45
KOG2394|consensus	636		99.41
KOG1034|consensus	385		99.4
KOG2055|consensus	514		99.39
KOG1007|consensus	370		99.39
KOG2919|consensus	406		99.39
KOG1007|consensus	370		99.38
KOG1538|consensus	1081		99.38
KOG4378|consensus	673		99.38
KOG1034|consensus	385		99.38
KOG1408|consensus	1080		99.37
KOG2055|consensus	514		99.37
KOG2048|consensus	691		99.36
KOG2919|consensus	406		99.36
KOG1523|consensus	361		99.35
KOG0771|consensus	398		99.35
KOG1310|consensus	758		99.34
KOG0649|consensus	325		99.34
KOG4328|consensus	498		99.34
KOG0290|consensus	364		99.32
KOG1445|consensus	1012		99.32
KOG2394|consensus	636		99.31
KOG2110|consensus	391		99.3
KOG1240|consensus	1431		99.29
KOG0649|consensus	325		99.28
KOG1063|consensus	764		99.28
COG2319	466	FOG: WD40 repeat [General function prediction only	99.28
KOG1036|consensus	323		99.27
KOG0321|consensus	720		99.27
KOG2106|consensus	626		99.26
KOG0322|consensus	323		99.26
KOG2445|consensus	361		99.25
KOG4378|consensus	673		99.24
KOG0642|consensus	577		99.24
KOG2106|consensus	626		99.24
KOG1188|consensus	376		99.24
KOG0307|consensus	1049		99.23
KOG1009|consensus	434		99.22
KOG1310|consensus	758		99.22
PRK01742	429	tolB translocation protein TolB; Provisional	99.22
KOG0290|consensus	364		99.22
KOG0650|consensus	733		99.21
COG2319	466	FOG: WD40 repeat [General function prediction only	99.21
KOG1272|consensus	545		99.21
KOG0644|consensus	1113		99.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.2
KOG1539|consensus	910		99.2
KOG0771|consensus	398		99.18
KOG1188|consensus	376		99.18
KOG1272|consensus	545		99.16
KOG2111|consensus	346		99.16
KOG0644|consensus	1113		99.15
KOG4227|consensus	609		99.14
PRK04922	433	tolB translocation protein TolB; Provisional	99.13
PRK05137	435	tolB translocation protein TolB; Provisional	99.12
KOG4227|consensus	609		99.12
PRK03629	429	tolB translocation protein TolB; Provisional	99.12
PRK03629	429	tolB translocation protein TolB; Provisional	99.11
PRK01742	429	tolB translocation protein TolB; Provisional	99.11
PRK02889	427	tolB translocation protein TolB; Provisional	99.1
KOG1523|consensus	361		99.08
PRK11028	330	6-phosphogluconolactonase; Provisional	99.07
KOG1963|consensus	792		99.05
KOG2139|consensus	445		99.05
KOG0974|consensus	967		99.05
KOG2111|consensus	346		99.05
PRK11028	330	6-phosphogluconolactonase; Provisional	99.04
PRK04922	433	tolB translocation protein TolB; Provisional	99.03
KOG2139|consensus	445		99.03
KOG1524|consensus	737		99.03
PRK05137	435	tolB translocation protein TolB; Provisional	99.03
KOG1524|consensus	737		99.02
PRK01029	428	tolB translocation protein TolB; Provisional	99.02
PRK02889	427	tolB translocation protein TolB; Provisional	98.99
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.98
KOG0650|consensus	733		98.98
KOG3881|consensus	412		98.97
KOG1587|consensus	555		98.94
PRK00178	430	tolB translocation protein TolB; Provisional	98.91
KOG0280|consensus	339		98.9
PRK04792	448	tolB translocation protein TolB; Provisional	98.89
KOG1587|consensus	555		98.89
KOG2321|consensus	703		98.87
KOG1517|consensus	1387		98.86
KOG2315|consensus	566		98.86
KOG1538|consensus	1081		98.85
KOG3881|consensus	412		98.85
KOG0974|consensus	967		98.84
KOG1963|consensus	792		98.83
PRK00178	430	tolB translocation protein TolB; Provisional	98.82
KOG1517|consensus	1387		98.81
KOG0322|consensus	323		98.78
KOG2321|consensus	703		98.77
KOG4547|consensus	541		98.77
PRK01029	428	tolB translocation protein TolB; Provisional	98.74
KOG1064|consensus	2439		98.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.73
KOG0309|consensus	1081		98.69
PRK04792	448	tolB translocation protein TolB; Provisional	98.69
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.67
KOG0280|consensus	339		98.67
KOG4497|consensus	447		98.66
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.65
KOG4497|consensus	447		98.61
PRK04043	419	tolB translocation protein TolB; Provisional	98.58
KOG4547|consensus	541		98.57
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.57
KOG1409|consensus	404		98.55
KOG3914|consensus	390		98.53
KOG3914|consensus	390		98.51
COG4946	668	Uncharacterized protein related to the periplasmic	98.48
KOG2695|consensus	425		98.47
KOG1240|consensus	1431		98.42
PRK04043	419	tolB translocation protein TolB; Provisional	98.42
KOG2315|consensus	566		98.39
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.35
KOG4532|consensus	344		98.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.32
KOG4190|consensus	1034		98.28
KOG1912|consensus	1062		98.28
KOG2314|consensus	698		98.27
KOG1334|consensus	559		98.27
KOG1354|consensus	433		98.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.23
KOG4714|consensus	319		98.22
COG4946	668	Uncharacterized protein related to the periplasmic	98.22
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.21
KOG1409|consensus	404		98.21
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.19
KOG1334|consensus	559		98.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.13
KOG1064|consensus	2439		98.12
KOG2041|consensus	1189		98.12
KOG2695|consensus	425		98.12
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.04
KOG2066|consensus	846		98.02
KOG4714|consensus	319		98.0
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.99
KOG2314|consensus	698		97.98
KOG0309|consensus	1081		97.96
PRK02888	635	nitrous-oxide reductase; Validated	97.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.92
KOG2041|consensus	1189		97.9
KOG1354|consensus	433		97.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.87
KOG1645|consensus	463		97.87
KOG4190|consensus	1034		97.85
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.83
KOG4532|consensus	344		97.82
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.81
KOG1832|consensus	1516		97.75
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.68
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.63
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.62
KOG2066|consensus	846		97.59
KOG4640|consensus	665		97.58
KOG1275|consensus	1118		97.57
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.56
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.54
KOG3617|consensus	1416		97.52
KOG1645|consensus	463		97.52
KOG1912|consensus	1062		97.47
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.47
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.42
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.37
KOG3621|consensus	726		97.37
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.36
KOG1275|consensus	1118		97.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.17
KOG1008|consensus	783		97.14
KOG0882|consensus	558		97.1
KOG1008|consensus	783		97.08
KOG1832|consensus	1516		97.03
PRK13616	591	lipoprotein LpqB; Provisional	97.02
KOG2114|consensus	933		97.01
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.0
KOG0882|consensus	558		97.0
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.93
KOG1920|consensus	1265		96.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.64
KOG4640|consensus	665		96.63
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.62
COG3391	381	Uncharacterized conserved protein [Function unknow	96.59
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.54
PRK02888	635	nitrous-oxide reductase; Validated	96.44
KOG3617|consensus	1416		96.35
PRK13616	591	lipoprotein LpqB; Provisional	96.33
KOG2079|consensus	1206		96.31
COG3391	381	Uncharacterized conserved protein [Function unknow	96.26
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.24
KOG1920|consensus	1265		96.22
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.19
KOG3621|consensus	726		96.03
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.98
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.97
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.96
KOG2444|consensus	238		95.94
KOG4649|consensus	354		95.91
KOG2114|consensus	933		95.9
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.87
KOG2395|consensus	644		95.76
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.69
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.56
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.51
KOG4649|consensus	354		95.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.48
KOG2079|consensus	1206		95.32
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.32
KOG4499|consensus	310		95.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.1
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.01
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.93
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.89
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.88
PRK10115	686	protease 2; Provisional	94.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.75
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.55
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.37
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.24
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.2
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.53
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.47
KOG3630|consensus	1405		93.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.05
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.81
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.49
KOG3630|consensus	1405		92.45
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.41
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	92.37
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.83
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	91.83
PRK10115	686	protease 2; Provisional	91.81
KOG2444|consensus	238		91.79
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.75
KOG2395|consensus	644		91.61
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.29
KOG4441|consensus	571		91.11
PHA02713	557	hypothetical protein; Provisional	91.0
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.98
KOG1916|consensus	1283		90.85
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	90.71
KOG4499|consensus	310		90.69
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.46
KOG2377|consensus	657		90.46
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.04
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	89.76
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.75
KOG4441|consensus	571		89.12
PRK13684	334	Ycf48-like protein; Provisional	89.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.75
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.75
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.71
KOG4460|consensus	741		88.56
KOG1916|consensus	1283		88.52
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.15
PHA03098	534	kelch-like protein; Provisional	88.04
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	88.0
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.85
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.47
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.38
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.36
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.04
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.0
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.91
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	86.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.56
PHA03098	534	kelch-like protein; Provisional	85.49
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.45
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.88
PHA02713	557	hypothetical protein; Provisional	84.75
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.69
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	83.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	81.37
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.25
COG5167	776	VID27 Protein involved in vacuole import and degra	81.09
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.89
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	80.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	80.75

>KOG3237|consensus

Probab=100.00  E-value=1.1e-68  Score=466.63  Aligned_cols=246  Identities=48%  Similarity=0.664  Sum_probs=234.1

Q ss_pred             chhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHHHHHHHHHHhhhCCCcceeeeeeeeeecceee
Q psy9319         186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINARLVDGEHF  265 (432)
Q Consensus       186 mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka~~~np~ef~~~m~~~~~~~g~~~  265 (432)
                      ||||.++..+.+++|++|+||..|.++|+||+++||++|+.||+.++.+|+.||++|+++|||||||+|+++++.+|+|+
T Consensus         1 mss~~~a~ks~rk~HRERsQP~~Rrk~G~LEKkKDY~~RA~dy~kKq~tLK~LrekA~eKNpDEfyh~M~~~K~~dG~hi   80 (250)
T KOG3237|consen    1 MSSFVNASKSRRKVHRERSQPEARRKYGFLEKKKDYKKRAQDYHKKQDTLKKLREKALEKNPDEFYHKMHNSKTKDGRHI   80 (250)
T ss_pred             CcchhhcchhhhhHHHhhcChhHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccccCCccc
Confidence            79999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhcccccccccCCCCceEEEEeChHHhhccChhhhcccccc
Q psy9319         266 ENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPE  345 (432)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~tqd~~y~~~~~~~~~~ki~~l~~~l~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~  345 (432)
                      +....+ ++|+|||+||+|||++||+++|++|++|||+|.++||+++.....+|+||+||||.+|+++|||+.+|+|+++
T Consensus        81 ~k~e~~-e~t~eqlklmktQDi~YV~~kr~~ErkKIerlka~L~~~~~~~~~s~kH~~F~d~~~ea~~Fdp~~~f~tt~e  159 (250)
T KOG3237|consen   81 EKDEVD-EPTMEQLKLMKTQDIGYVRMKRQRERKKIERLKAQLHCVDRNKGESNKHTKFVDDREEAKSFDPAKFFQTTLE  159 (250)
T ss_pred             cccccc-cCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccccccccCceeEEeccHHHHhccChHHHhcccHH
Confidence            998777 7999999999999999999999999999999999999999766779999999999999999999999999999


Q ss_pred             ccccccCCCchhhhhhhhh-hhchhhHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-ceeCCCCCCCC
Q psy9319         346 LLPRKTNRLKVEDIAEMSV-AQHVKSKMKLV--KARQAEKLGKRLERERNLGVVERKLFVQRFLSEKP-KLVKPGTPDSA  421 (432)
Q Consensus       346 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~--~~~~~~~l~~~~~r~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  421 (432)
                      |++|.+||++.++++.... ..++..++.++  +.++|++|.+|.+|+++|.+|+++|+|++.||+|+ +|+++++.+++
T Consensus       160 lv~R~~nr~~keei~~~~~~~~~~~~~k~~~k~~~k~~~eL~kR~eR~k~L~~v~qkv~l~k~L~~k~~~k~Kk~~v~~~  239 (250)
T KOG3237|consen  160 LVGRSENRLKKEEIQKEISKATSPMPKKSLDKKKQKRYNELKKRREREKKLNVVEQKVELQKELQKKKKRKVKKKTVDSP  239 (250)
T ss_pred             HhhhhhhhhhHHHHHHHHHhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhccch
Confidence            9999999999999988765 23556666666  88999999999999999999999999999999998 89999999999


Q ss_pred             ceeeeccccCC
Q psy9319         422 PVYKWKFERKK  432 (432)
Q Consensus       422 ~~~k~~~~rk~  432 (432)
                      |||||.++|||
T Consensus       240 ~vyk~~~erkr  250 (250)
T KOG3237|consen  240 AVYKWRYERKR  250 (250)
T ss_pred             hhhcchhhccC
Confidence            99999999997

>PF03998 Utp11: Utp11 protein; InterPro: IPR007144 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=100.00  E-value=7.9e-64  Score=461.65  Aligned_cols=234  Identities=46%  Similarity=0.700  Sum_probs=214.5

Q ss_pred             ccccccccCccccccccceeccCcceeecccchhHHHHHHHHHHHHhhhCCCcceeeeeeeeeec-ceeeeCCC-CCCCC
Q psy9319         197 QKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINARLVD-GEHFENPK-PEAED  274 (432)
Q Consensus       197 ~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka~~~np~ef~~~m~~~~~~~-g~~~~~~~-~~~~~  274 (432)
                      ++.|+||+||.+|.++|+||+++||++|+.|||.+++.|+.|+++|+.+|||||||+|+++++.+ |+|+..+. ++ .+
T Consensus         1 rr~HrERsQP~~R~~lGlLEKkKDY~lRA~dy~~K~~~Lk~Lr~KA~~RNpDEFyf~M~~sk~~~~G~h~~~~~~~~-~~   79 (243)
T PF03998_consen    1 RRNHRERSQPASRKKLGLLEKKKDYKLRAKDYHKKEAKLKRLREKAANRNPDEFYFGMINSKTDDDGVHVEKREENE-EL   79 (243)
T ss_pred             CCcccccCChHHhhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHhcccCCCCeeccCccccc-cC
Confidence            47899999999999999999999999999999999999999999999999999999999999999 99999988 55 79


Q ss_pred             CHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhcccccccccCCCCceEEEEeChHHhhccChhhhccccccccccccCCC
Q psy9319         275 SEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRL  354 (432)
Q Consensus       275 ~~~~~~~~~tqd~~y~~~~~~~~~~ki~~l~~~l~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      |+|+++||+|||++||++++++|++|||+|+++||++++.....|+|||||||++|+++|+++++|+|+|+++++.+|||
T Consensus        80 ~~e~~~llkTQD~~Yv~~~~~~e~kKIekL~~~l~~~~~~~~~~~kh~vFvD~~~e~~~f~~~~~~~t~~e~~~~~~nr~  159 (243)
T PF03998_consen   80 SKEQVKLLKTQDLNYVRTKRQIERKKIEKLQSELHLLDGKSSGKNKHIVFVDSEEEAKEFDPAEYFDTDPELLDRRENRP  159 (243)
T ss_pred             CHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCceEEecCchHHHhccHHHhhccchhhhccccccc
Confidence            99999999999999999999999999999999999999765556899999999999999999999999999999999999


Q ss_pred             chhhhhhhhh-hhchhhHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----ceeCCCCCCCCceeeec
Q psy9319         355 KVEDIAEMSV-AQHVKSKMKLV--KARQAEKLGKRLERERNLGVVERKLFVQRFLSEKP----KLVKPGTPDSAPVYKWK  427 (432)
Q Consensus       355 ~~~~l~~~~~-~~~~~~~~~~~--~~~~~~~l~~~~~r~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~k~~  427 (432)
                      +.++|++..+ ...+.....+.  +.+.|++|++|++|+++|..++++|++||+||+||    +++++++ +++|||+|+
T Consensus       160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~eL~~r~~R~k~L~~~~~~lelqr~lm~kg~~~k~k~~~~~-~~~~vykwk  238 (243)
T PF03998_consen  160 KKDQLEEESLPEEEREAKKKLEKKREKLYKELEARLEREKELKKAEQELELQRALMKKGKKKKKKIKGGK-NGAPVYKWK  238 (243)
T ss_pred             cHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeccCCC-CCCceEEee
Confidence            9999998764 22333334443  88999999999999999999999999999999998    4454443 489999999


Q ss_pred             cccCC
Q psy9319         428 FERKK  432 (432)
Q Consensus       428 ~~rk~  432 (432)
                      +||||
T Consensus       239 ~eRKr  243 (243)
T PF03998_consen  239 RERKR  243 (243)
T ss_pred             cccCC
Confidence            99997

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp11, a large ribonuclear protein that associates with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>COG5223 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.4e-49  Score=333.73  Aligned_cols=225  Identities=35%  Similarity=0.458  Sum_probs=207.3

Q ss_pred             cccccccCccccccccceeccCcceeecccchhHHHHHHHHHHHHhhhCCCcceeeeeeeeeecceeeeCCCCCCCCCHH
Q psy9319         198 KTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINARLVDGEHFENPKPEAEDSEE  277 (432)
Q Consensus       198 ~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka~~~np~ef~~~m~~~~~~~g~~~~~~~~~~~~~~~  277 (432)
                      .+|++|.||..+..+|+|++++||+-|+.||+.++..|+.||++|.++|||||||+|.+.++.+|+..+.+..+ .+++|
T Consensus        12 K~hrERtQp~~RrkyG~LEK~KDyvkRaqd~~~kq~~lk~lrEka~ernpdEyyh~mhs~Ktd~gv~~~~ReDe-~~~md   90 (240)
T COG5223          12 KVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMHSVKTDGGVSSIYREDE-PTIMD   90 (240)
T ss_pred             hhHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHhhhhcccCCccceecccc-chHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988777 89999


Q ss_pred             HHHHhhhcchhHHHHHHHHHHHHHHHHHhcccccccccCCCCceEEEEeChHHhhccChhhhccccccccccccCCCchh
Q psy9319         278 QKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVE  357 (432)
Q Consensus       278 ~~~~~~tqd~~y~~~~~~~~~~ki~~l~~~l~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
                      ++|+++|||.+|+++.|..|+.+++.+..+++|.     ..+.||+|||+..++++|.|+++|.|..||+.++.||.+.+
T Consensus        91 ~~KmlktqD~~~~R~~r~lEr~k~~~~~~qi~f~-----es~~htifvD~r~~~kef~peeFf~tt~elV~r~enrl~kd  165 (240)
T COG5223          91 LAKMLKTQDNEIQRCRRKLERYKPMPCGTQIKFE-----ESSLHTIFVDMRFGQKEFIPEEFFRTTEELVVRRENRLEKD  165 (240)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHhCCcchhceeeee-----ccccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999994     56799999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhchhhHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--ceeCCCCCCCCceeeeccccCC
Q psy9319         358 DIAEMSVAQHVKSKMKLV--KARQAEKLGKRLERERNLGVVERKLFVQRFLSEKP--KLVKPGTPDSAPVYKWKFERKK  432 (432)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~r~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~rk~  432 (432)
                      |++...+.......+...  +++...+|..|++|+++|..+++.|+++|.|++||  |||.    +|.|||+|+.+|||
T Consensus       166 qi~nNel~~sv~~~~~~~k~k~k~~~el~~~~krd~kl~~~eer~e~~r~l~~kg~kkkvv----~~k~~~~~rn~~~r  240 (240)
T COG5223         166 QIENNELEDSVFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGKKKVV----NGKPVYKWRNERKR  240 (240)
T ss_pred             hhcccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc----CCcccccccccccC
Confidence            998777521222222222  78899999999999999999999999999999999  6665    67999999999987

>KOG0272|consensus

Probab=99.95  E-value=5.5e-28  Score=228.81  Aligned_cols=194  Identities=20%  Similarity=0.269  Sum_probs=171.6

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      -|..++|+|+|..+ .+++.|.+++.||+.     ++..+....||+.+|.+++|.|||.++++|+.|..-+|||+++|.
T Consensus       263 RVs~VafHPsG~~L-~TasfD~tWRlWD~~-----tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr  336 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFL-GTASFDSTWRLWDLE-----TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR  336 (459)
T ss_pred             hheeeeecCCCcee-eecccccchhhcccc-----cchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence            35778999999977 888999888666654     788888899999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEcc-CCcEEEEEECCCeEEEEe
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHP-KQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fsp-dg~~l~s~s~d~~I~vwd  163 (432)
                      ++..+.+|..+|.+++|||+|..|||||.|++++|||++...++..++ |..-|+.+.|+| .|.+|+|++.|++     
T Consensus       337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-----  411 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-----  411 (459)
T ss_pred             EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-----
Confidence            999999999999999999999999999999999999999999999887 999999999999 7899999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                         +++|...+..+++++.||.--.+..           -..|++..   +++.+.|.++++|.
T Consensus       412 ---~kiWs~~~~~~~ksLaGHe~kV~s~-----------Dis~d~~~---i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  412 ---VKIWSTRTWSPLKSLAGHEGKVISL-----------DISPDSQA---IATSSFDRTIKLWR  458 (459)
T ss_pred             ---eeeecCCCcccchhhcCCccceEEE-----------EeccCCce---EEEeccCceeeecc
Confidence               8999999999999999996322221           12234444   88999999999994

>KOG0263|consensus

Probab=99.94  E-value=9.3e-27  Score=235.48  Aligned_cols=237  Identities=22%  Similarity=0.266  Sum_probs=192.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|..+.|+|+..++ .+||.|.+++.|.+.     +..++..+.||..||+++.|+|-|-+|||||.|++-++|.....
T Consensus       452 GPVyg~sFsPd~rfL-lScSED~svRLWsl~-----t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFL-LSCSEDSSVRLWSLD-----TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             Cceeeeeecccccce-eeccCCcceeeeecc-----cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            457889999999877 899999887665554     66899999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .+...|.+|-+.|.|+.|+|++.|+++||.|.+|++||+.+|..+..+. |.++|.+++|||+|.+|++|+.|+.     
T Consensus       526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-----  600 (707)
T KOG0263|consen  526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-----  600 (707)
T ss_pred             CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-----
Confidence            9999999999999999999999999999999999999999999999997 9999999999999999999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHHHHHHHH---
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKK---  240 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~---  240 (432)
                         |.+||+.+|..+..+.+|.-.-..           .....++.-   +..++.|-.+|+||+......+.....   
T Consensus       601 ---I~iWDl~~~~~v~~l~~Ht~ti~S-----------lsFS~dg~v---Lasgg~DnsV~lWD~~~~~~~~~~~~~~~~  663 (707)
T KOG0263|consen  601 ---IKIWDLANGSLVKQLKGHTGTIYS-----------LSFSRDGNV---LASGGADNSVRLWDLTKVIELLNLGHISTS  663 (707)
T ss_pred             ---EEEEEcCCCcchhhhhcccCceeE-----------EEEecCCCE---EEecCCCCeEEEEEchhhcccccccccccc
Confidence               888999999999988888321111           111122222   788999999999999875544211111   


Q ss_pred             ---HHhhhCCCcceeeeeeeee--ecceeeeCCC
Q psy9319         241 ---KALEKNEDEFHTHMINARL--VDGEHFENPK  269 (432)
Q Consensus       241 ---ka~~~np~ef~~~m~~~~~--~~g~~~~~~~  269 (432)
                         ...+.|++.+..+.+-.|.  ..|+|..++.
T Consensus       664 ~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN  697 (707)
T KOG0263|consen  664 NSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN  697 (707)
T ss_pred             cccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence               1122346666666555554  5577777664

>KOG0271|consensus

Probab=99.94  E-value=3.5e-26  Score=214.17  Aligned_cols=227  Identities=20%  Similarity=0.218  Sum_probs=178.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|-+++|+|++..+ ++++.|.++     ++||..+..+..+.++|...|.|++|+|||..||+|+.||+|++||..+|
T Consensus       116 e~Vl~~~fsp~g~~l-~tGsGD~Tv-----R~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  116 EAVLSVQFSPTGSRL-VTGSGDTTV-----RLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             CcEEEEEecCCCceE-EecCCCceE-----EeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            357899999999887 888888766     55566688899999999999999999999999999999999999999988


Q ss_pred             eeE-EEEeeCCCCEEEEEEee-----CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCC
Q psy9319          85 TCI-RTFQRLDWPVRAISFSH-----DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        85 ~~~-~~~~~h~~~V~~i~~sp-----dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      .++ ..+.+|...|++++|.|     ..++|+++|.||.|+|||+..+.++..+. |..+|+|+.|--+ .+|++||.|+
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~Dr  268 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDR  268 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCc
Confidence            774 67889999999999986     56799999999999999999999998886 9999999999754 5899999999


Q ss_pred             eEEEEeCCceEEeecCCCceeeeecCCCc------hhhhHHhhhcccccccccCccc----------------cccccce
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKKRKRGGTM------SSWVKAAKVNQKTHRERHQPED----------------RRKLGLL  215 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~~~~g~~m------ss~~~a~~~~~~~h~er~qp~~----------------r~~~glL  215 (432)
                      +        |++|+...|.++..+.||..      -|-+.+.......|..+..+..                ...--++
T Consensus       269 t--------Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV  340 (480)
T KOG0271|consen  269 T--------IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV  340 (480)
T ss_pred             e--------EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence            9        88888888888888888851      1212222111122222211100                0002267


Q ss_pred             eccCcceeecccchhHHHHHHHHHHHHhhhC
Q psy9319         216 EKKKDYRVRADHFNKKKKTLQILKKKALEKN  246 (432)
Q Consensus       216 e~~~D~~lR~~d~~~k~~~l~~L~~ka~~~n  246 (432)
                      +++.|+++=+|+-...++.+.++....+..|
T Consensus       341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn  371 (480)
T KOG0271|consen  341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVN  371 (480)
T ss_pred             EecCCceEEEecccccccchhhhhchhhhee
Confidence            8888888888888777777777777777666

>KOG0272|consensus

Probab=99.94  E-value=5.9e-27  Score=221.86  Aligned_cols=196  Identities=20%  Similarity=0.225  Sum_probs=167.1

Q ss_pred             cccccccCCCC-cceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRP-SLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~-~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .|.++.|+|.. ..-+++|+.|+++..|.+     .+-.++..|.+|...|..++|+|+|++|+++|.|.+-++||+.++
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~-----~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKL-----SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeecc-----CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence            45788899984 555699999998866655     466889999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ..+....||...|.+++|.|||.+++||+.|..-+|||+++|.++..+. |..+|.+++|+|+|..|+|||.|++     
T Consensus       294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-----  368 (459)
T KOG0272|consen  294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-----  368 (459)
T ss_pred             hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-----
Confidence            9998999999999999999999999999999999999999999999987 9999999999999999999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCc-cccccccceeccCcceeecccc
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQP-EDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp-~~r~~~glLe~~~D~~lR~~d~  228 (432)
                         ++|||++....+..+.+|+-     .      +...+.+| .+.+   +++.+-|-++++|.-
T Consensus       369 ---~kVWDLR~r~~ly~ipAH~n-----l------VS~Vk~~p~~g~f---L~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  369 ---CKVWDLRMRSELYTIPAHSN-----L------VSQVKYSPQEGYF---LVTASYDNTVKIWST  417 (459)
T ss_pred             ---EEEeeecccccceecccccc-----h------hhheEecccCCeE---EEEcccCcceeeecC
Confidence               66666665555666666532     1      22255566 4444   789999999999944

>KOG0279|consensus

Probab=99.93  E-value=8e-25  Score=197.88  Aligned_cols=212  Identities=17%  Similarity=0.167  Sum_probs=167.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .+|..+..++++++. .++++|++.     ++||..+++..+.|.||...|.+++|+||.+.+++||.|.+|.+|++. |
T Consensus        64 H~v~dv~~s~dg~~a-lS~swD~~l-----rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g  136 (315)
T KOG0279|consen   64 HFVSDVVLSSDGNFA-LSASWDGTL-----RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-G  136 (315)
T ss_pred             eEecceEEccCCceE-EeccccceE-----EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-c
Confidence            468899999999876 888899866     555666889999999999999999999999999999999999999997 4


Q ss_pred             eeEEEEeeC--CCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          85 TCIRTFQRL--DWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        85 ~~~~~~~~h--~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .+..++..+  .+.|.|+.|+|.  ..+|+++|.|++|++||+++.+....+. |.+.++.+++||||..+++|+.||.+
T Consensus       137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~  216 (315)
T KOG0279|consen  137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA  216 (315)
T ss_pred             cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE
Confidence            555565544  688999999996  7799999999999999999988877765 88999999999999999999999999


Q ss_pred             EEEeCC--------------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCcc
Q psy9319         160 RKQDCG--------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPE  207 (432)
Q Consensus       160 ~vwd~~--------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~  207 (432)
                      .+||++                                .|++||+.++.++..+.-...+.-..+...  .+..--..++
T Consensus       217 ~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~--~clslaws~d  294 (315)
T KOG0279|consen  217 MLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDP--ICLSLAWSAD  294 (315)
T ss_pred             EEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCc--EEEEEEEcCC
Confidence            999985                                388999988888776654332220000000  0111111122


Q ss_pred             ccccccceeccCcceeecccc
Q psy9319         208 DRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       208 ~r~~~glLe~~~D~~lR~~d~  228 (432)
                      +   ..++.+-.|..||+|..
T Consensus       295 G---~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  295 G---QTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             C---cEEEeeecCCcEEEEEe
Confidence            2   33788899999999953

>KOG0271|consensus

Probab=99.93  E-value=1.4e-25  Score=210.08  Aligned_cols=196  Identities=25%  Similarity=0.319  Sum_probs=148.7

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      .+...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+.++..+|...|.|++|+|||..||+|+.||+|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEE-Ee-cCCceEEEEEcc-----CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCch--------
Q psy9319         123 VESGKKVYD-IC-IQAATFTVAWHP-----KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMS--------  187 (432)
Q Consensus       123 ~~~~~~~~~-~~-~~~~V~~l~fsp-----dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~ms--------  187 (432)
                      ..+|+++-. +. |...|.+++|.|     .++.|++++.||.        +++||+..+.++..+.||+|+        
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~--------vrIWd~~~~~~~~~lsgHT~~VTCvrwGG  257 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS--------VRIWDTKLGTCVRTLSGHTASVTCVRWGG  257 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC--------EEEEEccCceEEEEeccCccceEEEEEcC
Confidence            999987654 33 999999999987     5689999999999        555555556666666666543        


Q ss_pred             -------hhhHHhhhccccc--ccccCccccccccceeccCcceeecccchhHHHH---HHHHHHHHhhhC
Q psy9319         188 -------SWVKAAKVNQKTH--RERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT---LQILKKKALEKN  246 (432)
Q Consensus       188 -------s~~~a~~~~~~~h--~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~---l~~L~~ka~~~n  246 (432)
                             |.+..++.+....  ..+.--++..+.+-|..+.||.+|.--|++....   ...++++|.+++
T Consensus       258 ~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY  328 (480)
T KOG0271|consen  258 EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY  328 (480)
T ss_pred             CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence                   4444444432221  1111123334466677777777777666654333   335556665554

>KOG0286|consensus

Probab=99.92  E-value=9.1e-24  Score=192.12  Aligned_cols=194  Identities=16%  Similarity=0.235  Sum_probs=168.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .++.||.|-+++. + .++|.|.     ...+||+++++....+.||.+.|.+++++| +++.+++|+.|++.+|||++.
T Consensus       146 gylScC~f~dD~~-i-lT~SGD~-----TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  146 GYLSCCRFLDDNH-I-LTGSGDM-----TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             ceeEEEEEcCCCc-e-EecCCCc-----eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            5678888877544 4 5555554     456778889999999999999999999999 999999999999999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec---CCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI---QAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~---~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      +.++++|.+|+..|+++.|.|+|.-+++||.|+++++||++..+.+..+.+   ..+|.+++||-.|++|++|..|.+  
T Consensus       219 ~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~--  296 (343)
T KOG0286|consen  219 GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT--  296 (343)
T ss_pred             cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc--
Confidence            999999999999999999999999999999999999999999999998874   456999999999999999999988  


Q ss_pred             EEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         161 KQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       161 vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                            +.+||.-.++.+..+.||.           .|..-.+..|++..   +.+++.|..+|+|.
T Consensus       297 ------c~vWDtlk~e~vg~L~GHe-----------NRvScl~~s~DG~a---v~TgSWDs~lriW~  343 (343)
T KOG0286|consen  297 ------CNVWDTLKGERVGVLAGHE-----------NRVSCLGVSPDGMA---VATGSWDSTLRIWA  343 (343)
T ss_pred             ------eeEeeccccceEEEeeccC-----------CeeEEEEECCCCcE---EEecchhHheeecC
Confidence                  8888888888888888874           23333455677777   89999999999993

>KOG0263|consensus

Probab=99.91  E-value=2.4e-24  Score=218.09  Aligned_cols=222  Identities=16%  Similarity=0.201  Sum_probs=188.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEE--------------------------eecCcceeeEEEccCCcCEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKF--------------------------KEHHKLEEQNILKAHPVTCICI   58 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~--------------------------~d~~~~~~~~~l~~h~~~V~~l   58 (432)
                      .-+.|+.|+++++++ +.+..|..+..|.+.-                          .|.........+.||+++|..+
T Consensus       379 ~~v~ca~fSddssml-A~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSML-ACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CcceeEeecCCcchh-hccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            456889999999965 7778888888887761                          1122234456789999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCc
Q psy9319          59 EFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAA  137 (432)
Q Consensus        59 ~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~  137 (432)
                      .|+|+.++|+++|.|++|++|.+.+..++..+.||..+|+++.|+|.|-|+||+|.|++-++|......++..+. |.+.
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD  537 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD  537 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888886 8999


Q ss_pred             eEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceec
Q psy9319         138 TFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEK  217 (432)
Q Consensus       138 V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~  217 (432)
                      |.|+.|||++.++++||.|.+        +++||+.+|..++.+.||.-           ..+.....|.+++   +.++
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~t--------VRlWDv~~G~~VRiF~GH~~-----------~V~al~~Sp~Gr~---LaSg  595 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRT--------VRLWDVSTGNSVRIFTGHKG-----------PVTALAFSPCGRY---LASG  595 (707)
T ss_pred             cceEEECCcccccccCCCCce--------EEEEEcCCCcEEEEecCCCC-----------ceEEEEEcCCCce---Eeec
Confidence            999999999999999999999        89999999999999999854           3333455677777   8999


Q ss_pred             cCcceeecccchhHHHHHHHHHHHHhhhCCCcc
Q psy9319         218 KKDYRVRADHFNKKKKTLQILKKKALEKNEDEF  250 (432)
Q Consensus       218 ~~D~~lR~~d~~~k~~~l~~L~~ka~~~np~ef  250 (432)
                      ..|..|.+||+.... .+..++......+.-+|
T Consensus       596 ~ed~~I~iWDl~~~~-~v~~l~~Ht~ti~SlsF  627 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGS-LVKQLKGHTGTIYSLSF  627 (707)
T ss_pred             ccCCcEEEEEcCCCc-chhhhhcccCceeEEEE
Confidence            999999999998754 34556555555555555

>KOG0279|consensus

Probab=99.91  E-value=1.3e-23  Score=189.97  Aligned_cols=206  Identities=20%  Similarity=0.177  Sum_probs=175.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +-|..++..+.+..++.+++.|.++-.|.+.--|...|..+..+.||+..|..++.++||++.++++.|+++++||+.+|
T Consensus        16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g   95 (315)
T KOG0279|consen   16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG   95 (315)
T ss_pred             ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC
Confidence            44788888888888889999999999999987788889999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccC--CcEEEEEECCCeE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPK--QYLLAYACDDKYD  159 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspd--g~~l~s~s~d~~I  159 (432)
                      +....|.+|...|.+++|+||.+.+++||.|.+|.+|++..+ |..++.   +...|.|+.|+|+  ..+|+++|.|++ 
T Consensus        96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt-  173 (315)
T KOG0279|consen   96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT-  173 (315)
T ss_pred             cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce-
Confidence            999999999999999999999999999999999999998654 555554   2677999999998  689999999999 


Q ss_pred             EEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHH
Q psy9319         160 RKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKK  233 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~  233 (432)
                             +++||+.+-+....+.||+-           ........|++..   ..++.+|..+-+||.+.++.
T Consensus       174 -------vKvWnl~~~~l~~~~~gh~~-----------~v~t~~vSpDGsl---casGgkdg~~~LwdL~~~k~  226 (315)
T KOG0279|consen  174 -------VKVWNLRNCQLRTTFIGHSG-----------YVNTVTVSPDGSL---CASGGKDGEAMLWDLNEGKN  226 (315)
T ss_pred             -------EEEEccCCcchhhccccccc-----------cEEEEEECCCCCE---EecCCCCceEEEEEccCCce
Confidence                   66666666666666666542           2222333566666   67799999999999998776

>KOG0266|consensus

Probab=99.91  E-value=2.4e-23  Score=212.91  Aligned_cols=203  Identities=21%  Similarity=0.269  Sum_probs=171.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|..++|+|++..+ ++++.|.++++|++.    ..+..+.++.+|...|++++|+|+|+++++|+.|++|+|||+.++
T Consensus       204 ~~v~~~~fs~d~~~l-~s~s~D~tiriwd~~----~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  204 RGVSDVAFSPDGSYL-LSGSDDKTLRIWDLK----DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             cceeeeEECCCCcEE-EEecCCceEEEeecc----CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence            347999999999855 899999888777662    466899999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc--EEEEEe-cCC--ceEEEEEccCCcEEEEEECCCeE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK--KVYDIC-IQA--ATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~--~~~~~~-~~~--~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .+...+.+|...|++++|++++.+|++++.|+.|++||+.++.  ++..+. +..  ++.++.|+|++.++++++.|+. 
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-  357 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-  357 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-
Confidence            9999999999999999999999999999999999999999999  555554 222  6899999999999999999999 


Q ss_pred             EEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         160 RKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                             +++|++..+.+...+.+|...-  .+...      .-..+.+..   ++.+..|..+.+|+...+
T Consensus       358 -------~~~w~l~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~---i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  358 -------LKLWDLRSGKSVGTYTGHSNLV--RCIFS------PTLSTGGKL---IYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             -------EEEEEccCCcceeeecccCCcc--eeEec------ccccCCCCe---EEEEeCCceEEEEeCCcc
Confidence                   8888888888888888887661  11111      111334444   899999999999999873

>KOG0266|consensus

Probab=99.91  E-value=1.7e-23  Score=213.98  Aligned_cols=200  Identities=22%  Similarity=0.307  Sum_probs=168.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC-
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA-   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~-   81 (432)
                      ..|.++.|+|++..+ ++++.|..+..|..     .++.  ....+.+|...|.+++|+|+|.++++|+.|++|+|||+ 
T Consensus       160 ~sv~~~~fs~~g~~l-~~~~~~~~i~~~~~-----~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRAL-AAASSDGLIRIWKL-----EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             CceEEEEEcCCCCeE-EEccCCCcEEEeec-----ccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            567889999999985 88888887766666     3444  67777999999999999999999999999999999999 


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      ..+.++.++.+|...|++++|+|+|+++++|+.|++|++||+++++++..+. |.+.|.+++|+++|.+|++++.|+.  
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~--  311 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT--  311 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc--
Confidence            5668899999999999999999999999999999999999999999999997 8899999999999999999999999  


Q ss_pred             EEeCCceEEeecCCCc--eeeeecCCCchh-hhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         161 KQDCGNLKVFGFLPEP--IKKRKRGGTMSS-WVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       161 vwd~~~i~vwd~~~~~--~~~~~~g~~mss-~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                            +++||+.++.  ++..+.++.-++ ...          ....|.+.+   ++....|..+++||+...
T Consensus       312 ------i~vwd~~~~~~~~~~~~~~~~~~~~~~~----------~~fsp~~~~---ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  312 ------IRVWDLETGSKLCLKLLSGAENSAPVTS----------VQFSPNGKY---LLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             ------EEEEECCCCceeeeecccCCCCCCceeE----------EEECCCCcE---EEEecCCCeEEEEEccCC
Confidence                  7777777776  445555554332 111          122366666   899999999999999763

>KOG0286|consensus

Probab=99.89  E-value=3.1e-22  Score=182.18  Aligned_cols=204  Identities=17%  Similarity=0.170  Sum_probs=159.0

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCc-ceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK-LEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      |..|+|+|.++.+ +++.-|....++++..-|.+. -...+.+.+|++.+.|+.|-+|+ .|+++|.|.++.+||+++|+
T Consensus       100 VMtCA~sPSg~~V-AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~  177 (343)
T KOG0286|consen  100 VMTCAYSPSGNFV-ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQ  177 (343)
T ss_pred             EEEEEECCCCCeE-EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccce
Confidence            5789999999977 666677666666665333222 24456799999999999998855 68899999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          86 CIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .+..|.+|.+.|.+++++| +++.+++|+.|...++||++.+.+++.+. |.+.|.++.|.|+|.-+++|+.|++.    
T Consensus       178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc----  253 (343)
T KOG0286|consen  178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC----  253 (343)
T ss_pred             EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee----
Confidence            9999999999999999999 99999999999999999999999999997 99999999999999999999999995    


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHH
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKK  232 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~  232 (432)
                          ++||++....+..+.......         -....-....+|.   ++.+..||..-+||--+.+
T Consensus       254 ----RlyDlRaD~~~a~ys~~~~~~---------gitSv~FS~SGRl---Lfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  254 ----RLYDLRADQELAVYSHDSIIC---------GITSVAFSKSGRL---LFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ----EEEeecCCcEEeeeccCcccC---------CceeEEEcccccE---EEeeecCCceeEeeccccc
Confidence                455555444444443221100         0000111234455   7788899999999875543

>KOG0277|consensus

Probab=99.89  E-value=1.7e-22  Score=180.58  Aligned_cols=225  Identities=18%  Similarity=0.198  Sum_probs=176.6

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~   82 (432)
                      .++++.++|++.....+++|+.|++.++|+..    ....+++.++.|...|.++.|++ +...++++|-|++|++|+..
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~----~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLT----MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccC----CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence            35678999999999888999999998877743    34568899999999999999999 66778888999999999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEcc-CCcEEEEEECCCe
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHP-KQYLLAYACDDKY  158 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fsp-dg~~l~s~s~d~~  158 (432)
                      -+..+.+|.+|...|....||| .+++++++|.|+++++||++.. +.+. +. |...+.++.|+. +...++||+.|+.
T Consensus       136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCce
Confidence            9999999999999999999999 7889999999999999999864 4444 55 888999999987 6689999999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHHHHHH
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQIL  238 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L  238 (432)
                      |++||+++++       ..+..+.||....-           +....|-...  -+.+.+-|.+.|+||+......+...
T Consensus       215 vr~wDir~~r-------~pl~eL~gh~~AVR-----------kvk~Sph~~~--lLaSasYDmT~riw~~~~~ds~~e~~  274 (311)
T KOG0277|consen  215 VRGWDIRNLR-------TPLFELNGHGLAVR-----------KVKFSPHHAS--LLASASYDMTVRIWDPERQDSAIETV  274 (311)
T ss_pred             EEEEehhhcc-------ccceeecCCceEEE-----------EEecCcchhh--HhhhccccceEEecccccchhhhhhh
Confidence            8888888766       23455556543211           1222232222  24677889999999998766665444


Q ss_pred             HHHHhhhCCCcceeeeeeeee
Q psy9319         239 KKKALEKNEDEFHTHMINARL  259 (432)
Q Consensus       239 ~~ka~~~np~ef~~~m~~~~~  259 (432)
                      .      .--||-++.-=+-.
T Consensus       275 ~------~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  275 D------HHTEFVCGLDWSLF  289 (311)
T ss_pred             h------ccceEEeccccccc
Confidence            2      34567666554444

>KOG0291|consensus

Probab=99.88  E-value=2.4e-21  Score=194.98  Aligned_cols=208  Identities=18%  Similarity=0.193  Sum_probs=170.9

Q ss_pred             CCCCCcccccccC----------CCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE
Q psy9319           1 MEGQNFIPLLGLN----------PRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG   70 (432)
Q Consensus         1 ~~g~n~I~~l~~~----------p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg   70 (432)
                      ||+.++|.++.++          ..|..++..|     .+.+.+-+|+..+...+...+||...++|+++||||+++++|
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~-----~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG  368 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC-----SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATG  368 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcC-----CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEec
Confidence            5677777666554          4455554444     345677788777778888889999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCc--eEEEEEccCCc
Q psy9319          71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAA--TFTVAWHPKQY  148 (432)
Q Consensus        71 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~--V~~l~fspdg~  148 (432)
                      +.||.|+|||..+|-|..+|..|++.|+.+.|+..|+.+++.|-||+|+.||+....+..++..+.+  ..|++.+|.|.
T Consensus       369 ~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe  448 (893)
T KOG0291|consen  369 AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE  448 (893)
T ss_pred             cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999875554  56888999999


Q ss_pred             EEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         149 LLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      +++.|+.|..       .|.+|++.+|+.+-.+.||.-....           ....|.+..   +.+++.|+++|.||.
T Consensus       449 lV~AG~~d~F-------~IfvWS~qTGqllDiLsGHEgPVs~-----------l~f~~~~~~---LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  449 LVCAGAQDSF-------EIFVWSVQTGQLLDILSGHEGPVSG-----------LSFSPDGSL---LASGSWDKTVRIWDI  507 (893)
T ss_pred             EEEeeccceE-------EEEEEEeecCeeeehhcCCCCccee-----------eEEccccCe---EEeccccceEEEEEe
Confidence            9999988865       5899999999999999999632211           111233333   788999999999998


Q ss_pred             hhHHHH
Q psy9319         229 NKKKKT  234 (432)
Q Consensus       229 ~~k~~~  234 (432)
                      -....+
T Consensus       508 f~s~~~  513 (893)
T KOG0291|consen  508 FSSSGT  513 (893)
T ss_pred             eccCce
Confidence            776333

>KOG0285|consensus

Probab=99.88  E-value=5.3e-22  Score=184.83  Aligned_cols=155  Identities=16%  Similarity=0.188  Sum_probs=141.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +-|.|+++.|....| ++++.|+++.+|++     .+|++..++.||-..|..+++|+-..|+++++.|+.|+.||+...
T Consensus       152 gWVr~vavdP~n~wf-~tgs~DrtikIwDl-----atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  152 GWVRSVAVDPGNEWF-ATGSADRTIKIWDL-----ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             ceEEEEeeCCCceeE-EecCCCceeEEEEc-----ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            447899999986655 99999988765554     599999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      +.+..+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+. |..+|.++.+.|....+++||.|++|++||
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD  305 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD  305 (460)
T ss_pred             hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence            9999999999999999999998999999999999999999999999987 999999999999888999999999966666


Q ss_pred             CC
Q psy9319         164 CG  165 (432)
Q Consensus       164 ~~  165 (432)
                      ++
T Consensus       306 l~  307 (460)
T KOG0285|consen  306 LR  307 (460)
T ss_pred             ec
Confidence            53

>KOG0295|consensus

Probab=99.87  E-value=1.8e-22  Score=188.37  Aligned_cols=203  Identities=19%  Similarity=0.239  Sum_probs=176.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.++++.|+..|..+ ++|+.|.++..|++.-    ...+...+.+|...|.++.|-|-|.+++|++.|.+|+.|++.+|
T Consensus       151 ~sv~di~~~a~Gk~l-~tcSsDl~~~LWd~~~----~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg  225 (406)
T KOG0295|consen  151 DSVFDISFDASGKYL-ATCSSDLSAKLWDFDT----FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG  225 (406)
T ss_pred             cceeEEEEecCccEE-EecCCccchhheeHHH----HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc
Confidence            457889999888665 9999998866665541    25778888999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccC---------------Cc
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPK---------------QY  148 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspd---------------g~  148 (432)
                      -++.+|.+|...|..++.+.||.++++++.|.+|++|-+.+++|...+. |..+|.+++|.|.               +.
T Consensus       226 ~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~  305 (406)
T KOG0295|consen  226 YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQ  305 (406)
T ss_pred             eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence            9999999999999999999999999999999999999999999988887 8999999999873               25


Q ss_pred             EEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         149 LLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      ++++++.|++        |++||+.+|.++.++.||.--.-.           ....|.+++   |++...|-++|+||+
T Consensus       306 ~l~s~SrDkt--------Ik~wdv~tg~cL~tL~ghdnwVr~-----------~af~p~Gky---i~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  306 VLGSGSRDKT--------IKIWDVSTGMCLFTLVGHDNWVRG-----------VAFSPGGKY---ILSCADDKTLRVWDL  363 (406)
T ss_pred             EEEeecccce--------EEEEeccCCeEEEEEecccceeee-----------eEEcCCCeE---EEEEecCCcEEEEEe
Confidence            8999999999        999999999999999998532111           222477888   999999999999999


Q ss_pred             hhHHHH
Q psy9319         229 NKKKKT  234 (432)
Q Consensus       229 ~~k~~~  234 (432)
                      +.++..
T Consensus       364 ~~~~cm  369 (406)
T KOG0295|consen  364 KNLQCM  369 (406)
T ss_pred             ccceee
Confidence            987665

>KOG0315|consensus

Probab=99.87  E-value=1.9e-21  Score=173.50  Aligned_cols=146  Identities=23%  Similarity=0.180  Sum_probs=132.4

Q ss_pred             CCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--eEEEEe
Q psy9319          14 PRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT--CIRTFQ   91 (432)
Q Consensus        14 p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~--~~~~~~   91 (432)
                      ++...++++++-|.++     ++|...+|.+..+++...+.|+.+.+.|+++.|++|+. ..|++||++++.  ++.+|.
T Consensus         7 ~d~~viLvsA~YDhTI-----RfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e   80 (311)
T KOG0315|consen    7 TDDPVILVSAGYDHTI-----RFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFE   80 (311)
T ss_pred             CCCceEEEeccCccee-----eeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEe
Confidence            3456777888877755     66777799999999988899999999999999999885 479999999765  589999


Q ss_pred             eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319          92 RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus        92 ~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +|...|+++.|..+|+++++||.||+++|||+++..+...+.+.++|.++..+|+...|++|..+|.|++||++
T Consensus        81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence            99999999999999999999999999999999999888889999999999999999999999999999999974

>KOG0284|consensus

Probab=99.87  E-value=1.7e-22  Score=190.99  Aligned_cols=195  Identities=17%  Similarity=0.268  Sum_probs=162.2

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |+.+.|.|.|..+ ++++..+     .+.+|+..+......++.|..+|.++.|+++|.+++||+.+|.|++|+..- ..
T Consensus        99 V~~v~WtPeGRRL-ltgs~SG-----EFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nn  171 (464)
T KOG0284|consen   99 VNVVRWTPEGRRL-LTGSQSG-----EFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NN  171 (464)
T ss_pred             eeeEEEcCCCcee-Eeecccc-----cEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hh
Confidence            6889999999988 5555544     445555545555566789999999999999999999999999999999874 34


Q ss_pred             EEEEeeCC-CCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          87 IRTFQRLD-WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        87 ~~~~~~h~-~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +..+..|. ..|++++|||....++++|+||+|+|||...++.-..+. |...|.+++|+|.-.+|+++|.|..      
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl------  245 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL------  245 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce------
Confidence            55555555 899999999988999999999999999999887776665 8888999999999999999999998      


Q ss_pred             CceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         165 GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       165 ~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                        |++||.++|.++.++.+|.-.           ......+|.+..   ++++++|..+++.|...
T Consensus       246 --VKlWDprSg~cl~tlh~HKnt-----------Vl~~~f~~n~N~---Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  246 --VKLWDPRSGSCLATLHGHKNT-----------VLAVKFNPNGNW---LLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             --eEeecCCCcchhhhhhhccce-----------EEEEEEcCCCCe---eEEccCCceEEEEehhH
Confidence              999999999999999888532           222445566645   89999999999999984

>KOG0292|consensus

Probab=99.87  E-value=9.3e-22  Score=200.62  Aligned_cols=220  Identities=20%  Similarity=0.225  Sum_probs=175.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.+..++|+|..+.++++      ...+.|++||..-+.++..+..|.++|..++|+|.+.+++||++|-.|++|+..+.
T Consensus        10 sRvKglsFHP~rPwILts------lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTS------LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             ccccceecCCCCCEEEEe------ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            456789999999998666      46667888888889999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .|+.++.+|-..|+.+.|++.-.+|+|+|+|.+|+||+..+++|+..++ |..-|.|..|+|....++++|-|.+|||||
T Consensus        84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD  163 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD  163 (1202)
T ss_pred             eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence            9999999999999999999999999999999999999999999999997 888999999999999999999999988888


Q ss_pred             CCceEEeecCCCceeeeecCCCchh-h----hHHhhh----cccc-cccccCccccccccceeccCcceeecccchhHHH
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSS-W----VKAAKV----NQKT-HRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKK  233 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss-~----~~a~~~----~~~~-h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~  233 (432)
                      +.-++-=....|..-....++.+++ +    +..++.    +.|- ......|.-   .-++++..|..+.+|.++..++
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl---pliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL---PLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc---ceEEecCCcceeeEEEeccccc
Confidence            8766655555553323333333311 1    111111    0000 000111111   2268999999999999987544

>KOG0284|consensus

Probab=99.87  E-value=2.7e-22  Score=189.63  Aligned_cols=195  Identities=23%  Similarity=0.322  Sum_probs=159.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|.+++|+|+++.| ++||.|+++.+|++.     ..+....|.||.-.|.|++|+|.-.+|++||.|..|++||..+|.
T Consensus       182 aIRdlafSpnDskF-~t~SdDg~ikiWdf~-----~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKF-LTCSDDGTIKIWDFR-----MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hhheeccCCCCcee-EEecCCCeEEEEecc-----CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            47899999999988 999999988766665     567788899999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEcc-CCcEEEEEECCCeEEEEe
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHP-KQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fsp-dg~~l~s~s~d~~I~vwd  163 (432)
                      |+.++.+|...|..+.|+|++++|+|+|.|..++++|+++.+.+..+. |...|.++.|+| ...+|.+|+.||.|..| 
T Consensus       256 cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~-  334 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW-  334 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE-
Confidence            999999999999999999999999999999999999999888888887 999999999999 45788999999995444 


Q ss_pred             CCceEEeecCCCceee-eecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         164 CGNLKVFGFLPEPIKK-RKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~-~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                             .+.....+. .-.+|.-..|..           ...|-+.-   +.+++.|..+|.|.-
T Consensus       335 -------~v~~~~p~~~i~~AHd~~iwsl-----------~~hPlGhi---l~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  335 -------VVGLEEPLGEIPPAHDGEIWSL-----------AYHPLGHI---LATGSNDRTVRFWTR  379 (464)
T ss_pred             -------eccccccccCCCcccccceeee-----------ecccccee---EeecCCCcceeeecc
Confidence                   444222222 222333222221           11244433   678899999999943

>KOG0265|consensus

Probab=99.87  E-value=1.6e-21  Score=178.11  Aligned_cols=199  Identities=18%  Similarity=0.114  Sum_probs=166.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|..+.|+|+++.| ++++.|..+-.|++.    ...+....+++|.+.|..+.|.+|++.|++++.|.+|+.||..+|
T Consensus        48 geI~~~~F~P~gs~~-aSgG~Dr~I~LWnv~----gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   48 GEIYTIKFHPDGSCF-ASGGSDRAIVLWNVY----GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             ceEEEEEECCCCCeE-eecCCcceEEEEecc----ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            347899999999877 888888877666654    244667788999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      +++..+.+|...|+++.-+.-| .++.+|+.|+++++||+++..++.++....+++++.|..++..+.+|+-|+.     
T Consensus       123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~-----  197 (338)
T KOG0265|consen  123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND-----  197 (338)
T ss_pred             eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc-----
Confidence            9999999999999999855444 4677889999999999999999999988999999999999999999999998     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                         |++||++.+..+..+.||.-.......           .|.+..   +++..=|-++|+||..+
T Consensus       198 ---ikvWd~r~~d~~~~lsGh~DtIt~lsl-----------s~~gs~---llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  198 ---IKVWDLRKNDGLYTLSGHADTITGLSL-----------SRYGSF---LLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ---eeeeccccCcceEEeecccCceeeEEe-----------ccCCCc---cccccccceEEEEEecc
Confidence               888888888888888888633222111           233333   77778899999998765

>KOG0273|consensus

Probab=99.87  E-value=5.6e-21  Score=183.56  Aligned_cols=200  Identities=21%  Similarity=0.241  Sum_probs=169.4

Q ss_pred             CCCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           2 EGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         2 ~g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      |..+-|.+++|+.+|.++ ++++.|+.+++|+.      +|....+|..|.+||.++.|+..|.+|++++.|+++.+||.
T Consensus       233 ~~nkdVT~L~Wn~~G~~L-atG~~~G~~riw~~------~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLL-ATGSEDGEARIWNK------DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA  305 (524)
T ss_pred             CccCCcceEEecCCCCeE-EEeecCcEEEEEec------CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence            445678999999999987 88888887766654      57889999999999999999999999999999999999998


Q ss_pred             CCCe-----------------------------------------eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEE
Q psy9319          82 AELT-----------------------------------------CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI  120 (432)
Q Consensus        82 ~~~~-----------------------------------------~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~v  120 (432)
                      .+|.                                         ++.++.+|.+.|.++.|+|.|.+|+++|.|++++|
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki  385 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI  385 (524)
T ss_pred             cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence            6543                                         23455789999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEe-cCCceEEEEEccCC---------cEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhh
Q psy9319         121 AHVESGKKVYDIC-IQAATFTVAWHPKQ---------YLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWV  190 (432)
Q Consensus       121 wd~~~~~~~~~~~-~~~~V~~l~fspdg---------~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~  190 (432)
                      |....+.+...+. |...|+.+.|+|+|         ..+++++.|++        +++||+..|.+++.+..|..... 
T Consensus       386 Ws~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst--------V~lwdv~~gv~i~~f~kH~~pVy-  456 (524)
T KOG0273|consen  386 WSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST--------VKLWDVESGVPIHTLMKHQEPVY-  456 (524)
T ss_pred             eecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe--------EEEEEccCCceeEeeccCCCceE-
Confidence            9998888888886 88899999999975         47889999999        99999999999999887764322 


Q ss_pred             HHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       191 ~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                                .....|.+++   +.+++.|..+.+|+...
T Consensus       457 ----------svafS~~g~y---lAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  457 ----------SVAFSPNGRY---LASGSLDGCVHIWSTKT  483 (524)
T ss_pred             ----------EEEecCCCcE---EEecCCCCeeEeccccc
Confidence                      2333567777   88999999999996643

>KOG0295|consensus

Probab=99.87  E-value=4.3e-21  Score=179.24  Aligned_cols=191  Identities=19%  Similarity=0.224  Sum_probs=159.2

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |.++.|-|.+..+ .+|+.|.++..|+     ..+|-++.++.+|...|..++.+.||.++++++.|.+|++|-+.++.|
T Consensus       196 vS~V~f~P~gd~i-lS~srD~tik~We-----~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~  269 (406)
T KOG0295|consen  196 VSSVFFLPLGDHI-LSCSRDNTIKAWE-----CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC  269 (406)
T ss_pred             eeeEEEEecCCee-eecccccceeEEe-----cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh
Confidence            5888899998665 8999998885555     458999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCCEEEEEEeeC---------------CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEE
Q psy9319          87 IRTFQRLDWPVRAISFSHD---------------GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLL  150 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spd---------------g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l  150 (432)
                      ...+..|+-+|.+++|.|.               +.++.+++.|++|++||+.+|.|+.++. |...|..++|+|.|++|
T Consensus       270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi  349 (406)
T KOG0295|consen  270 KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI  349 (406)
T ss_pred             hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE
Confidence            9999999999999999764               2589999999999999999999999986 99999999999999999


Q ss_pred             EEEECCCeEEEEeCCceEEeecCCCceeeeecCCC--chhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         151 AYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT--MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       151 ~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~--mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                      +++..|++        +++||+.++.+.+.+..|.  ..+++.....                .-.++++-|....+|.
T Consensus       350 ~ScaDDkt--------lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~----------------p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  350 LSCADDKT--------LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA----------------PYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEEecCCc--------EEEEEeccceeeeccCCCcceeEEEecCCCC----------------ceEEeccccceeeeee
Confidence            99999999        6666666677766665443  2222211111                1267777777777774

>KOG0285|consensus

Probab=99.86  E-value=3.9e-22  Score=185.70  Aligned_cols=195  Identities=19%  Similarity=0.213  Sum_probs=165.9

Q ss_pred             cceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEE
Q psy9319          41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI  120 (432)
Q Consensus        41 ~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~v  120 (432)
                      ..+..+++.+|.+.|.|+++.|...+|++|+.|++|.|||+.+|+...++.+|...|..+++|+...|+++++.|+.|++
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccc
Q psy9319         121 AHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKT  199 (432)
Q Consensus       121 wd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~  199 (432)
                      ||+...+.+..+. |-+.|++++.+|.-..|++|+.|.+        +++||+++...+..+.||......         
T Consensus       220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst--------~RvWDiRtr~~V~~l~GH~~~V~~---------  282 (460)
T KOG0285|consen  220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST--------IRVWDIRTRASVHVLSGHTNPVAS---------  282 (460)
T ss_pred             EechhhhhHHHhccccceeEEEeccccceeEEecCCcce--------EEEeeecccceEEEecCCCCccee---------
Confidence            9999999888775 8899999999999999999999999        888888888888888888643222         


Q ss_pred             cccccCccccccccceeccCcceeecccchhHHHHHHHH----HHHHhhhCCCcceeeeeee
Q psy9319         200 HRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQIL----KKKALEKNEDEFHTHMINA  257 (432)
Q Consensus       200 h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L----~~ka~~~np~ef~~~m~~~  257 (432)
                        ...+|....   +++++-|.++|+||....+.....-    --+|...+|.||.|+.-..
T Consensus       283 --V~~~~~dpq---vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  283 --VMCQPTDPQ---VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             --EEeecCCCc---eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence              444555555   8999999999999998766542211    1235667899988875433

>KOG0645|consensus

Probab=99.86  E-value=1.2e-20  Score=170.32  Aligned_cols=199  Identities=21%  Similarity=0.287  Sum_probs=155.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE-ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL-KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA--   82 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~--   82 (432)
                      -+..++|+|....++++|+.|.++++|...-  ..+..+...+ .+|...|.+++|+|.|++|++||.|.++.||.-.  
T Consensus        16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~--~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~   93 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSS--GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG   93 (312)
T ss_pred             cEEEEEeccCCceEEEeecCCceEEEEecCC--CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence            4788999998434569999999988887653  2234555555 4799999999999999999999999999999865  


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc---EEEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK---KVYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~---~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ...++.++.||+..|.|++||++|.+||+++.|..|.||.+..+.   +...+. |...|..+.|||...+|+++|.|++
T Consensus        94 efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT  173 (312)
T KOG0645|consen   94 EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT  173 (312)
T ss_pred             ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe
Confidence            357899999999999999999999999999999999999998554   455555 8899999999999999999999999


Q ss_pred             EEEEeCCceEEeecC-C--CceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         159 DRKQDCGNLKVFGFL-P--EPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       159 I~vwd~~~i~vwd~~-~--~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                              |++|.-. .  =.+++++.+|....|..+.           .|.+..   +.+...|.++++|.+
T Consensus       174 --------Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F-----------~~~G~r---l~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  174 --------IKVYRDEDDDDWECVQTLDGHENTVWSLAF-----------DNIGSR---LVSCSDDGTVSIWRL  224 (312)
T ss_pred             --------EEEEeecCCCCeeEEEEecCccceEEEEEe-----------cCCCce---EEEecCCcceEeeee
Confidence                    5555443 2  2467777777543322211           122222   677788888888853

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=1.5e-20  Score=192.54  Aligned_cols=167  Identities=19%  Similarity=0.190  Sum_probs=131.3

Q ss_pred             EEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------eeEEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCe
Q psy9319          47 ILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAEL-------TCIRTFQRLDWPVRAISFSHDG-ALIASGSEDLT  117 (432)
Q Consensus        47 ~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~  117 (432)
                      .+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++       .++..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            5789999999999999 8899999999999999999754       3567888999999999999975 69999999999


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhc
Q psy9319         118 IDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVN  196 (432)
Q Consensus       118 V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~  196 (432)
                      |++||+.++..+..+. |...|.+++|+|+|.+|++++.|+.        |++||+.++..+..+.+|.-.....++   
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~--------IrIwD~rsg~~v~tl~~H~~~~~~~~~---  218 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK--------LNIIDPRDGTIVSSVEAHASAKSQRCL---  218 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE--------EEEEECCCCcEEEEEecCCCCcceEEE---
Confidence            9999999999888876 8889999999999999999999999        666777777777776666421110000   


Q ss_pred             ccccccccCccccccc-cceeccCcceeecccchhH
Q psy9319         197 QKTHRERHQPEDRRKL-GLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       197 ~~~h~er~qp~~r~~~-glLe~~~D~~lR~~d~~~k  231 (432)
                           |.  +....-+ .-.++..|..+++||....
T Consensus       219 -----w~--~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        219 -----WA--KRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             -----Ec--CCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence                 11  1111100 0123456899999998753

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=4e-20  Score=190.75  Aligned_cols=148  Identities=16%  Similarity=0.252  Sum_probs=128.0

Q ss_pred             ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCe--------eEEEEeeCCCCEEEE
Q psy9319          30 KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT-GKYFAVGSKDALVSLWDAAELT--------CIRTFQRLDWPVRAI  100 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~~~~--------~~~~~~~h~~~V~~i  100 (432)
                      ....+.+|+......+..+.+|.++|.+++|+|+ +.+|++|+.|++|+|||+.++.        ++..+.+|...|.++
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV  131 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII  131 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence            3456778887777788899999999999999996 7899999999999999997542        345678899999999


Q ss_pred             EEeeCCCE-EEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceee
Q psy9319         101 SFSHDGAL-IASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       101 ~~spdg~~-l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~  179 (432)
                      +|+|++.. |++++.|++|++||+.+++.+..+.+...|.+++|+|+|.+|++++.|+.        +++||++++..+.
T Consensus       132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~--------IrIwD~Rsg~~i~  203 (568)
T PTZ00420        132 DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH--------MHIIDPRKQEIAS  203 (568)
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCE--------EEEEECCCCcEEE
Confidence            99998875 57899999999999999998887777788999999999999999999999        7777777788777


Q ss_pred             eecCCC
Q psy9319         180 RKRGGT  185 (432)
Q Consensus       180 ~~~g~~  185 (432)
                      .+.+|.
T Consensus       204 tl~gH~  209 (568)
T PTZ00420        204 SFHIHD  209 (568)
T ss_pred             EEeccc
Confidence            777765

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=2e-20  Score=191.70  Aligned_cols=161  Identities=16%  Similarity=0.197  Sum_probs=130.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeec--CcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH--HKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~--~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~I~iwd~   81 (432)
                      ..|.+++|+|.+..++++++.|+++.+|++.-...  ....++..+.+|...|.+++|+|++ .+|++|+.|++|+|||+
T Consensus        76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl  155 (493)
T PTZ00421         76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV  155 (493)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence            45789999994444558999999887777642110  1124577899999999999999975 79999999999999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCc-eEEEEEccCCcEEEEEE----C
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAA-TFTVAWHPKQYLLAYAC----D  155 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~-V~~l~fspdg~~l~s~s----~  155 (432)
                      .++..+..+.+|...|.+++|+|+|.+|++|+.|++|++||++++..+..+. |.+. +..+.|+|++..+++++    .
T Consensus       156 ~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~  235 (493)
T PTZ00421        156 ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ  235 (493)
T ss_pred             CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999888775 5544 45688999888777765    3


Q ss_pred             CCeEEEEeCC
Q psy9319         156 DKYDRKQDCG  165 (432)
Q Consensus       156 d~~I~vwd~~  165 (432)
                      |+.|++||++
T Consensus       236 Dr~VklWDlr  245 (493)
T PTZ00421        236 QRQIMLWDTR  245 (493)
T ss_pred             CCeEEEEeCC
Confidence            6775555554

>KOG0276|consensus

Probab=99.86  E-value=2e-21  Score=191.93  Aligned_cols=158  Identities=18%  Similarity=0.274  Sum_probs=144.0

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~   82 (432)
                      +++|.+++.+|..+.+ .++|+|-.++.|++.    ....+.++++||+..|.+++|+| |.+.++|+|-|++|+||.+.
T Consensus        97 ~DyIR~iavHPt~P~v-LtsSDDm~iKlW~we----~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg  171 (794)
T KOG0276|consen   97 SDYIRSIAVHPTLPYV-LTSSDDMTIKLWDWE----NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG  171 (794)
T ss_pred             ccceeeeeecCCCCeE-EecCCccEEEEeecc----CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC
Confidence            4789999999999877 777888877777654    24588999999999999999999 78999999999999999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      ...+..++.+|...|+|+++-|-  -.+|+||++|.+|+|||.++.+|+.++. |...|..+.|+|.-.++++||.||++
T Consensus       172 s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  172 SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccE
Confidence            99999999999999999999884  4699999999999999999999999997 99999999999999999999999999


Q ss_pred             EEEeCCc
Q psy9319         160 RKQDCGN  166 (432)
Q Consensus       160 ~vwd~~~  166 (432)
                      +||+..+
T Consensus       252 riWhs~T  258 (794)
T KOG0276|consen  252 RIWNSKT  258 (794)
T ss_pred             EEecCcc
Confidence            9998643

>KOG0276|consensus

Probab=99.85  E-value=9.2e-21  Score=187.33  Aligned_cols=196  Identities=20%  Similarity=0.227  Sum_probs=164.8

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Ce
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-LT   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~-~~   85 (432)
                      |.++.|-+..+.+ +++++|.     .|++++..++..+..+.+|...|.|++.+|...+++++|+|-+|++||... ..
T Consensus        58 vRa~kfiaRknWi-v~GsDD~-----~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa  131 (794)
T KOG0276|consen   58 VRAAKFIARKNWI-VTGSDDM-----QIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA  131 (794)
T ss_pred             hhhheeeeccceE-EEecCCc-----eEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence            3455555555555 7777765     556677779999999999999999999999999999999999999999985 56


Q ss_pred             eEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCC--cEEEEEECCCeEEE
Q psy9319          86 CIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQ--YLLAYACDDKYDRK  161 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg--~~l~s~s~d~~I~v  161 (432)
                      +.++|.+|+-.|.+++|.| |.+.++++|-|++|+||.+.+..+..++. |..+|.|+.|-|.|  .+|++|+.|.+   
T Consensus       132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t---  208 (794)
T KOG0276|consen  132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT---  208 (794)
T ss_pred             eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce---
Confidence            7899999999999999999 88999999999999999999998888886 99999999998855  79999999999   


Q ss_pred             EeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         162 QDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       162 wd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                           +++||..+..|++++.||+-.           .......|+-.-   +++++.|.++|+|.-..
T Consensus       209 -----iKvWDyQtk~CV~TLeGHt~N-----------vs~v~fhp~lpi---iisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  209 -----IKVWDYQTKSCVQTLEGHTNN-----------VSFVFFHPELPI---IISGSEDGTVRIWNSKT  258 (794)
T ss_pred             -----EEEeecchHHHHHHhhccccc-----------ceEEEecCCCcE---EEEecCCccEEEecCcc
Confidence                 999999999999999998621           111222343333   89999999999996654

>KOG0273|consensus

Probab=99.85  E-value=1.5e-20  Score=180.56  Aligned_cols=154  Identities=28%  Similarity=0.330  Sum_probs=140.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC---------CEEEEEeCCCe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG---------KYFAVGSKDAL   75 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg---------~~L~sgs~dg~   75 (432)
                      |.|.++.|+|.+.+| ++||.|.+.++|...     ...++..|.+|+..|..+.|+|+|         ..|++++.|++
T Consensus       360 g~V~alk~n~tg~LL-aS~SdD~TlkiWs~~-----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst  433 (524)
T KOG0273|consen  360 GEVNALKWNPTGSLL-ASCSDDGTLKIWSMG-----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST  433 (524)
T ss_pred             CceEEEEECCCCceE-EEecCCCeeEeeecC-----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence            678999999999877 999999887666544     667888999999999999999964         46899999999


Q ss_pred             EEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC
Q psy9319          76 VSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      |++||+..+.++++|..|..+|++++|||+|+++|+|+.||.|.+|++.+++.+..+...+.|..++|+.+|..|..+-.
T Consensus       434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s  513 (524)
T KOG0273|consen  434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS  513 (524)
T ss_pred             EEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             CCeEEEEeC
Q psy9319         156 DKYDRKQDC  164 (432)
Q Consensus       156 d~~I~vwd~  164 (432)
                      |+.+++.|+
T Consensus       514 d~~vcvldl  522 (524)
T KOG0273|consen  514 DGSVCVLDL  522 (524)
T ss_pred             CCCceEEEe
Confidence            999666654

>KOG0319|consensus

Probab=99.84  E-value=1.6e-20  Score=188.90  Aligned_cols=199  Identities=18%  Similarity=0.190  Sum_probs=169.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc-----eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL-----EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLW   79 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~-----~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iw   79 (432)
                      |.|.+++++-.+..+++++|.|.++..|.+.. +.++.     .+..+-..|...|+|++.+|+..++++||.|.+.+||
T Consensus       412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW  490 (775)
T KOG0319|consen  412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW  490 (775)
T ss_pred             cccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence            45677888888888889999999998888764 11111     1122345799999999999999999999999999999


Q ss_pred             eCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          80 DAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        80 d~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ++.......++.+|...|+|+.|+|..+.++|+|.|++|+||.+.+..|+.++. |...|..+.|-.+|..|++++.||-
T Consensus       491 ~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl  570 (775)
T KOG0319|consen  491 DLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL  570 (775)
T ss_pred             cccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc
Confidence            999999999999999999999999999999999999999999999999999997 9999999999999999999999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecc
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRAD  226 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~  226 (432)
                              +++|++.++.|++++.+|.--.|..+...           ...   -++++..|.++-.|
T Consensus       571 --------iKlWnikt~eC~~tlD~H~DrvWaL~~~~-----------~~~---~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  571 --------IKLWNIKTNECEMTLDAHNDRVWALSVSP-----------LLD---MFVTGGGDGRIIFW  616 (775)
T ss_pred             --------EEEEeccchhhhhhhhhccceeEEEeecC-----------ccc---eeEecCCCeEEEEe
Confidence                    99999999999999988875555543322           111   25777888888887

>PTZ00420 coronin; Provisional

Probab=99.84  E-value=1.3e-19  Score=186.99  Aligned_cols=209  Identities=14%  Similarity=0.128  Sum_probs=145.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeec--C-cceeeEEEccCCcCEEEEEEcCCCCE-EEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH--H-KLEEQNILKAHPVTCICIEFDPTGKY-FAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~--~-~~~~~~~l~~h~~~V~~l~~spdg~~-L~sgs~dg~I~iwd   80 (432)
                      ..|.+++|+|+...++++|+.|+++.+|++.-...  . ...++..+.+|...|.+++|+|++.. |++|+.|++|+|||
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD  154 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD  154 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence            46899999998555569999999887776642110  0 01245678899999999999998875 57899999999999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEE-----EEEccCCcEEEEEE
Q psy9319          81 AAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFT-----VAWHPKQYLLAYAC  154 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~-----l~fspdg~~l~s~s  154 (432)
                      +.++..+..+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+. |.+.+.+     ..|++++.+|++++
T Consensus       155 l~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG  233 (568)
T PTZ00420        155 IENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG  233 (568)
T ss_pred             CCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence            99988777775 66789999999999999999999999999999999988776 6655432     34568889999988


Q ss_pred             CCCeEEEEeCCceEEeecCC-CceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         155 DDKYDRKQDCGNLKVFGFLP-EPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       155 ~d~~I~vwd~~~i~vwd~~~-~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      .|+.    ..+.|++||+.. +..+.....+..++ . ....      +. .+.+..   ++.++.|..+|+|++..
T Consensus       234 ~d~~----~~R~VkLWDlr~~~~pl~~~~ld~~~~-~-L~p~------~D-~~tg~l---~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        234 FSKN----NMREMKLWDLKNTTSALVTMSIDNASA-P-LIPH------YD-ESTGLI---YLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             cCCC----CccEEEEEECCCCCCceEEEEecCCcc-c-eEEe------ee-CCCCCE---EEEEECCCeEEEEEccC
Confidence            7741    001145555542 33333221111000 0 0000      00 112222   67889999999998854

>KOG0269|consensus

Probab=99.84  E-value=2.2e-21  Score=195.81  Aligned_cols=204  Identities=17%  Similarity=0.200  Sum_probs=160.2

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      ++.+.|+.....++++|+..+.+..|++...  ...+++..+..|...|.++.|++ ...+|++||.||+|++||++...
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~--~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~  167 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS--IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK  167 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc--ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence            3677888777888899988888777777632  23567778999999999999998 66899999999999999999888


Q ss_pred             eEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCc-EEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          86 CIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGK-KVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~-~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      ...++.+....|+.+.|+| .+.+++++...|.+.+||++... +...+. |.++|.++.|+|++.+|||||.|+.    
T Consensus       168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~----  243 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM----  243 (839)
T ss_pred             ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc----
Confidence            8889999999999999999 78899999999999999998753 444443 9999999999999999999999999    


Q ss_pred             eCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         163 DCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       163 d~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                          |++|++.++.......-++.+          ...+.+..|+..++++..+...|+.+++||...
T Consensus       244 ----vkiWd~t~~~~~~~~tInTia----------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  244 ----VKIWDMTDSRAKPKHTINTIA----------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             ----EEEEeccCCCccceeEEeecc----------eeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence                555555433221111111111          222344457777888888888899999988764

>KOG0292|consensus

Probab=99.84  E-value=3.7e-20  Score=189.09  Aligned_cols=214  Identities=19%  Similarity=0.234  Sum_probs=173.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|..+.|+|..++| +|+.+|     +.|.+|+..+.+++.+|.||-..|..+.|++.-.+|+|+|+|.+|+||+..++
T Consensus        52 GpVRgv~FH~~qplF-VSGGDD-----ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr  125 (1202)
T KOG0292|consen   52 GPVRGVDFHPTQPLF-VSGGDD-----YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR  125 (1202)
T ss_pred             CccceeeecCCCCeE-EecCCc-----cEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence            457889999999988 776665     56677777789999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC--------C-------------------cEEE--EE-ec
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES--------G-------------------KKVY--DI-CI  134 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~--------~-------------------~~~~--~~-~~  134 (432)
                      .++..+.||.-.|.|..|+|....++|+|-|.+|+|||+..        +                   .++.  .+ +|
T Consensus       126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH  205 (1202)
T KOG0292|consen  126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH  205 (1202)
T ss_pred             ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence            99999999999999999999889999999999999999842        1                   0111  11 37


Q ss_pred             CCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC--chhhhHHhhhcccccccccCccccccc
Q psy9319         135 QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT--MSSWVKAAKVNQKTHRERHQPEDRRKL  212 (432)
Q Consensus       135 ~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~--mss~~~a~~~~~~~h~er~qp~~r~~~  212 (432)
                      ..+|..++|+|.-.++++|+.|+.|.+|-.+.-+.|.+++      +.||.  .||.   +.          .|.-.   
T Consensus       206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt------crgH~nnVssv---lf----------hp~q~---  263 (1202)
T KOG0292|consen  206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT------CRGHYNNVSSV---LF----------HPHQD---  263 (1202)
T ss_pred             ccccceEEecCCcceEEecCCcceeeEEEeccccceeehh------hhcccCCcceE---Ee----------cCccc---
Confidence            8889999999999999999999999999999999998876      34453  2221   11          12212   


Q ss_pred             cceeccCcceeecccchhHHHHHHHHHHHHhhhCCCccee
Q psy9319         213 GLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHT  252 (432)
Q Consensus       213 glLe~~~D~~lR~~d~~~k~~~l~~L~~ka~~~np~ef~~  252 (432)
                      -+|+.+.|..||+||..+....      +...+.-|.|++
T Consensus       264 lIlSnsEDksirVwDm~kRt~v------~tfrrendRFW~  297 (1202)
T KOG0292|consen  264 LILSNSEDKSIRVWDMTKRTSV------QTFRRENDRFWI  297 (1202)
T ss_pred             eeEecCCCccEEEEecccccce------eeeeccCCeEEE
Confidence            2899999999999999875544      334455666654

>KOG0282|consensus

Probab=99.84  E-value=5.2e-21  Score=184.44  Aligned_cols=155  Identities=20%  Similarity=0.204  Sum_probs=140.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      -|.++.|.|....|+.+++.|+.+.+|+++  +  .+.+++++.||..+|.+++|+++|..|+|+|.|+.|++||+++|.
T Consensus       216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy--~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~  291 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVY--D--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ  291 (503)
T ss_pred             ccchhhhccceeeEEEecCCCceEEEEEEe--c--CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence            367888999666666999999999888876  2  689999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          86 CIRTFQRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ++..|. ....++|+.|.||+ +.+++|+.|+.|+.||+++++.+..+. |-+.|..+.|-++|..+++++.|++++||+
T Consensus       292 ~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe  370 (503)
T KOG0282|consen  292 VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE  370 (503)
T ss_pred             EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence            999887 45678999999988 789999999999999999999888886 889999999999999999999999988887


Q ss_pred             CC
Q psy9319         164 CG  165 (432)
Q Consensus       164 ~~  165 (432)
                      .+
T Consensus       371 ~~  372 (503)
T KOG0282|consen  371 NR  372 (503)
T ss_pred             cC
Confidence            53

>KOG0283|consensus

Probab=99.84  E-value=2e-20  Score=191.22  Aligned_cols=160  Identities=16%  Similarity=0.169  Sum_probs=140.0

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEE----------------------------eec----------C-----
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKF----------------------------KEH----------H-----   40 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~----------------------------~d~----------~-----   40 (432)
                      .+.|.++.|+++|.++ ++++.|+.+++|.|.-                            -+.          .     
T Consensus       267 ~gaIw~mKFS~DGKyL-AsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s  345 (712)
T KOG0283|consen  267 KGAIWAMKFSHDGKYL-ASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS  345 (712)
T ss_pred             CCcEEEEEeCCCCcee-eecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence            4679999999999977 9999999999999875                            000          0     


Q ss_pred             ------------cceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEee-CCC
Q psy9319          41 ------------KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH-DGA  107 (432)
Q Consensus        41 ------------~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp-dg~  107 (432)
                                  .-++++.+.||.+.|..+.||.++ +|+++|.|.+|+||++....|+.+|. |...|+|++|+| |.+
T Consensus       346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR  423 (712)
T ss_pred             ccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence                        013456678999999999999865 89999999999999999999999987 999999999999 899


Q ss_pred             EEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       108 ~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      |+++||-||.|+||++...+.+.......-|++++|.|||...+.|+.+|.+++|+...
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~  482 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG  482 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence            99999999999999998888777666778899999999999999999999999998754

>KOG0319|consensus

Probab=99.84  E-value=3.1e-20  Score=186.87  Aligned_cols=154  Identities=18%  Similarity=0.310  Sum_probs=143.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .-|++++++|++.++ ++||.|.+.++|++.     .+..+.+|.||...|.|+.|+|..+.++++|.|.+|+||.+.++
T Consensus       464 KdIN~Vaia~ndkLi-AT~SqDktaKiW~le-----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLI-ATGSQDKTAKIWDLE-----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF  537 (775)
T ss_pred             ccccceEecCCCceE-Eecccccceeeeccc-----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence            347999999999987 999999988766654     78899999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .|+.+|.||+..|..+.|-.+|..|++|+.||-+++|++.++.|+.++. |...|++++-+|.+.+++||+.||.     
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-----  612 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-----  612 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-----
Confidence            9999999999999999999999999999999999999999999999997 9999999999999999999999999     


Q ss_pred             CCceEEeec
Q psy9319         164 CGNLKVFGF  172 (432)
Q Consensus       164 ~~~i~vwd~  172 (432)
                         |.+|.=
T Consensus       613 ---i~~wkD  618 (775)
T KOG0319|consen  613 ---IIFWKD  618 (775)
T ss_pred             ---EEEeec
Confidence               666653

>KOG0275|consensus

Probab=99.83  E-value=1.6e-21  Score=179.46  Aligned_cols=165  Identities=20%  Similarity=0.241  Sum_probs=145.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--------eEEEccCCcCEEEEEEcCCCCEEEEEeCCCeE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--------QNILKAHPVTCICIEFDPTGKYFAVGSKDALV   76 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--------~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I   76 (432)
                      .++.|..|+|++..+ +++|-|+-+..|++.     +|+.        ...+.-+..+|.|+.||.|..+|++|+.||.|
T Consensus       214 Sh~EcA~FSPDgqyL-vsgSvDGFiEVWny~-----~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI  287 (508)
T KOG0275|consen  214 SHVECARFSPDGQYL-VSGSVDGFIEVWNYT-----TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI  287 (508)
T ss_pred             cchhheeeCCCCceE-eeccccceeeeehhc-----cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence            467888999999876 888888877666654     5543        23455688999999999999999999999999


Q ss_pred             EEEeCCCCeeEEEEe-eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEE
Q psy9319          77 SLWDAAELTCIRTFQ-RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        77 ~iwd~~~~~~~~~~~-~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s  154 (432)
                      ++|.+.+|.|+..|. .|+..|+|+.||.|+..+++++.|.++++..+.+|+++..+. |.+-|....|+++|.++++++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence            999999999999997 899999999999999999999999999999999999999997 888899999999999999999


Q ss_pred             CCCeEEEEeCCceEEeecCCCceeeeecC
Q psy9319         155 DDKYDRKQDCGNLKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       155 ~d~~I~vwd~~~i~vwd~~~~~~~~~~~g  183 (432)
                      .||+        +++|+..++.|+.++..
T Consensus       368 sDgt--------vkvW~~KtteC~~Tfk~  388 (508)
T KOG0275|consen  368 SDGT--------VKVWHGKTTECLSTFKP  388 (508)
T ss_pred             CCcc--------EEEecCcchhhhhhccC
Confidence            9999        77787777777776653

>KOG0293|consensus

Probab=99.83  E-value=2.7e-20  Score=176.30  Aligned_cols=243  Identities=16%  Similarity=0.167  Sum_probs=187.1

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .|-|..+.|+++|..+ ++++.|.+..+|.+. .|.. .+...++.||..+|..+.||||.++|++++.|..+.+||+.+
T Consensus       224 tdEVWfl~FS~nGkyL-AsaSkD~Taiiw~v~-~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t  300 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKYL-ASASKDSTAIIWIVV-YDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT  300 (519)
T ss_pred             CCcEEEEEEcCCCeeE-eeccCCceEEEEEEe-cCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence            3678899999999977 999999999888875 3333 677899999999999999999999999999999999999999


Q ss_pred             CeeEEEEe-eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRTFQ-RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~~~-~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      |.+.+.+. +|...+.+++|.|||..+++|+.|+++..||+.... +....  ....|.+++.++||.++++.+.|..|+
T Consensus       301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~  379 (519)
T KOG0293|consen  301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR  379 (519)
T ss_pred             chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence            99987775 346789999999999999999999999999986443 33222  334589999999999999999999999


Q ss_pred             EEeC---------------------------------CceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCcc
Q psy9319         161 KQDC---------------------------------GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPE  207 (432)
Q Consensus       161 vwd~---------------------------------~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~  207 (432)
                      +++.                                 ..+.+||+.....+..+.||.-+-+....|.           +
T Consensus       380 l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF-----------g  448 (519)
T KOG0293|consen  380 LYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF-----------G  448 (519)
T ss_pred             eechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc-----------C
Confidence            9874                                 1488999998888888888876555443333           2


Q ss_pred             ccccccceeccCcceeecccchhHHHHHHHHHHHHhhhC-----CCcceeeeeeeeeeccee
Q psy9319         208 DRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKN-----EDEFHTHMINARLVDGEH  264 (432)
Q Consensus       208 ~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka~~~n-----p~ef~~~m~~~~~~~g~~  264 (432)
                      +...--+++++.|..+++|+.... ..+..|...+...|     |..=  .|..+...||..
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p--~m~ASasDDgtI  507 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADP--EMFASASDDGTI  507 (519)
T ss_pred             CCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCH--HHhhccCCCCeE
Confidence            222222789999999999976542 33455555554433     4432  355565555533

>KOG0291|consensus

Probab=99.83  E-value=1.3e-19  Score=182.69  Aligned_cols=155  Identities=25%  Similarity=0.258  Sum_probs=134.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~-   83 (432)
                      +.|.+++++|+|.++ ++++.|+.+     .+||..++-|..++..|+..|+.+.|+..|+.++++|-||+|+.||+.. 
T Consensus       351 ~~i~~l~YSpDgq~i-aTG~eDgKV-----KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLI-ATGAEDGKV-----KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             cceeeEEECCCCcEE-EeccCCCcE-----EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            457899999999877 888888765     5556668999999999999999999999999999999999999998753 


Q ss_pred             -------------------------------------------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEE
Q psy9319          84 -------------------------------------------LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI  120 (432)
Q Consensus        84 -------------------------------------------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~v  120 (432)
                                                                 |+.+-.+.||+++|.+++|+|++..|++||.|.+|++
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence                                                       2333345789999999999999999999999999999


Q ss_pred             EeCCCC-cEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         121 AHVESG-KKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       121 wd~~~~-~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      ||+-.. ..+..+.+.+.|..++|+|+|..|++++.||.|.+||..
T Consensus       505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             EEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence            998654 456777889999999999999999999999996666664

>KOG0316|consensus

Probab=99.83  E-value=7.3e-20  Score=162.21  Aligned_cols=208  Identities=14%  Similarity=0.135  Sum_probs=156.8

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +..|..+.|+-+|+.- .+|..|.+     +++|++-.+.++.++.+|...|..++.+.|...|++|+.|..|.+||+.+
T Consensus        17 qgaV~avryN~dGnY~-ltcGsdrt-----vrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   17 QGAVRAVRYNVDGNYC-LTCGSDRT-----VRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             ccceEEEEEccCCCEE-EEcCCCce-----EEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            4567889999999866 77777765     46777779999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC--cEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG--KKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~--~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      |+.+..|.+|.+.|+.+.|+.+...+++|+.|.++++||.++.  ++++.+. ....|.++..+  +..|++|+.||++|
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR  168 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR  168 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence            9999999999999999999999999999999999999999764  4444443 33444444443  33444455555544


Q ss_pred             EEeCCc--------------------------------eEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccc
Q psy9319         161 KQDCGN--------------------------------LKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPED  208 (432)
Q Consensus       161 vwd~~~--------------------------------i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~  208 (432)
                      .||++.                                +++.|-.+|++++.+.||.--..+.-.+..+.          
T Consensus       169 tydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs----------  238 (307)
T KOG0316|consen  169 TYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS----------  238 (307)
T ss_pred             EEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc----------
Confidence            444321                                77777777888887777764433332222110          


Q ss_pred             cccccceeccCcceeecccchhH
Q psy9319         209 RRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       209 r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                        .-..++++.|..+-+||.-..
T Consensus       239 --dthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  239 --DTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             --ceeEEeccCCceEEEEEeccc
Confidence              112578899999999988653

>KOG0315|consensus

Probab=99.82  E-value=2.4e-19  Score=160.12  Aligned_cols=166  Identities=17%  Similarity=0.181  Sum_probs=131.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|..+.|..+|..+ .+++.|+++++|+++     ...+.+.+ .|..+|+++..+|+..-|++|..+|.|++||+...
T Consensus        84 kNVtaVgF~~dgrWM-yTgseDgt~kIWdlR-----~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWM-YTGSEDGTVKIWDLR-----SLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             CceEEEEEeecCeEE-EecCCCceEEEEecc-----Ccccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            567888999999877 888999988888776     33444444 45578888888887777888888888888877531


Q ss_pred             -------------------------------------------------eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC
Q psy9319          85 -------------------------------------------------TCIRTFQRLDWPVRAISFSHDGALIASGSED  115 (432)
Q Consensus        85 -------------------------------------------------~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d  115 (432)
                                                                       .++..|..|.+.+..+.+|||+++|+++|.|
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence                                                             1334556788899999999999999999999


Q ss_pred             CeEEEEeCCCC-cEEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         116 LTIDIAHVESG-KKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       116 g~V~vwd~~~~-~~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      .+++||+.++. ..-..+ .|...++.++||.||.+|++|+.|+.        .++|++..++.+..+.||.
T Consensus       237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~--------~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT--------ARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc--------eeecccccCceeeecCCcc
Confidence            99999999887 222333 37788999999999999999999999        7888888888888777764

>KOG0645|consensus

Probab=99.82  E-value=4.8e-19  Score=159.95  Aligned_cols=154  Identities=20%  Similarity=0.260  Sum_probs=136.2

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE--   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~--   83 (432)
                      .|..++|+|.+.++ +++|+|.++.+|.=.   -...+++.+|+||...|-|++||++|.+||+++.|.+|-||.+..  
T Consensus        63 sVRsvAwsp~g~~L-a~aSFD~t~~Iw~k~---~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   63 SVRSVAWSPHGRYL-ASASFDATVVIWKKE---DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             eeeeeeecCCCcEE-EEeeccceEEEeecC---CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            46789999999955 999999988666532   345688999999999999999999999999999999999999873  


Q ss_pred             -CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC---CCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          84 -LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVE---SGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        84 -~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~---~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                       ..++..+++|...|..+.|+|...+|+++|.|++|++|.-.   .-.++.++. |...|.+++|+|.|..|++++.|++
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT  218 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc
Confidence             46788999999999999999999999999999999999876   336777776 7779999999999999999999999


Q ss_pred             EEEEe
Q psy9319         159 DRKQD  163 (432)
Q Consensus       159 I~vwd  163 (432)
                      ++||-
T Consensus       219 v~Iw~  223 (312)
T KOG0645|consen  219 VSIWR  223 (312)
T ss_pred             eEeee
Confidence            99887

>KOG0640|consensus

Probab=99.81  E-value=1.3e-19  Score=166.34  Aligned_cols=167  Identities=18%  Similarity=0.292  Sum_probs=136.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|+++.|+|....+ ++++.|.+++.+++.--.  -.+....++ ...+|.++.|+|.|.+|+.|.+..++++||+++.
T Consensus       173 devn~l~FHPre~IL-iS~srD~tvKlFDfsK~s--aKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  173 DEVNDLDFHPRETIL-ISGSRDNTVKLFDFSKTS--AKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY  248 (430)
T ss_pred             CcccceeecchhheE-EeccCCCeEEEEecccHH--HHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence            457899999998866 899999988777765211  112223333 3578999999999999999999999999999998


Q ss_pred             eeEEEEe---eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--c-CCceEEEEEccCCcEEEEEECCCe
Q psy9319          85 TCIRTFQ---RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--I-QAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        85 ~~~~~~~---~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~-~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      +|...-.   +|.+.|+++.+|+.|++.++||.||.|++||--++.|+.++.  | .+.|.+..|..+|+++++++.|..
T Consensus       249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~  328 (430)
T KOG0640|consen  249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST  328 (430)
T ss_pred             eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence            8865443   588999999999999999999999999999999999999986  4 456999999999999999999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecC
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g  183 (432)
                              +++|.+.+|.++..+.|
T Consensus       329 --------vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  329 --------VKLWEISTGRMLKEYTG  345 (430)
T ss_pred             --------eeeeeecCCceEEEEec
Confidence                    66666666666655544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.81  E-value=2.7e-18  Score=187.62  Aligned_cols=178  Identities=16%  Similarity=0.124  Sum_probs=135.3

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEee-CCCEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH-DGALIAS  111 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp-dg~~l~s  111 (432)
                      +.+||..+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.++..+..+ ..|.++.|++ +|.+|++
T Consensus       557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF  635 (793)
T ss_pred             EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence            34677778888889999999999999997 7899999999999999999999888888754 6799999965 7999999


Q ss_pred             EeCCCeEEEEeCCCCc-EEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhh
Q psy9319         112 GSEDLTIDIAHVESGK-KVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSW  189 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~-~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~  189 (432)
                      |+.||.|++||++++. ++..+ .|...|.++.|. ++.+|++++.|+.|++||+..-.  ....+..+..+.||.....
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~--~~~~~~~l~~~~gh~~~i~  712 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI--SGINETPLHSFMGHTNVKN  712 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc--cccCCcceEEEcCCCCCee
Confidence            9999999999998765 34444 488899999997 67899999999996666653210  0001234555666542110


Q ss_pred             hHHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         190 VKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       190 ~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      .           ....|.+..   +..++.|..+++|+..
T Consensus       713 ~-----------v~~s~~~~~---lasgs~D~~v~iw~~~  738 (793)
T PLN00181        713 F-----------VGLSVSDGY---IATGSETNEVFVYHKA  738 (793)
T ss_pred             E-----------EEEcCCCCE---EEEEeCCCEEEEEECC
Confidence            0           111233333   7888999999999864

>KOG0282|consensus

Probab=99.81  E-value=2.2e-20  Score=180.17  Aligned_cols=172  Identities=22%  Similarity=0.304  Sum_probs=148.9

Q ss_pred             cceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeE
Q psy9319          41 KLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE-LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTI  118 (432)
Q Consensus        41 ~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V  118 (432)
                      ..+.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.++.+|.+|..+|.+++|+++|..++|+|.|+.|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            3467889999999999999999 899999999999999999886 89999999999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEEecCCceEEEEEccCC-cEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcc
Q psy9319         119 DIAHVESGKKVYDICIQAATFTVAWHPKQ-YLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQ  197 (432)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~V~~l~fspdg-~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~  197 (432)
                      ++||+++|+++..+.....+.++.|+|++ +.+++|+.|+.        |..||+++|++++.+.-|.-+-..       
T Consensus       283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k--------i~~wDiRs~kvvqeYd~hLg~i~~-------  347 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKK--------IRQWDIRSGKVVQEYDRHLGAILD-------  347 (503)
T ss_pred             eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCc--------EEEEeccchHHHHHHHhhhhheee-------
Confidence            99999999999999988999999999998 88999999999        888888888877766554322221       


Q ss_pred             cccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         198 KTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       198 ~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                          ....+.++.   +++.+.|-.+|+|++...-.+
T Consensus       348 ----i~F~~~g~r---FissSDdks~riWe~~~~v~i  377 (503)
T KOG0282|consen  348 ----ITFVDEGRR---FISSSDDKSVRIWENRIPVPI  377 (503)
T ss_pred             ----eEEccCCce---EeeeccCccEEEEEcCCCccc
Confidence                222356666   899999999999999865433

>KOG0281|consensus

Probab=99.80  E-value=1.1e-19  Score=168.94  Aligned_cols=213  Identities=21%  Similarity=0.234  Sum_probs=161.8

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |.|+.+.  +..+ ++++.|.++.+|     |..+..++..+.||++.|.|+.|.  .+.|++||.|.+|++||..+|.+
T Consensus       200 VYClQYD--D~ki-VSGlrDnTikiW-----D~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  200 VYCLQYD--DEKI-VSGLRDNTIKIW-----DKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             eEEEEec--chhh-hcccccCceEEe-----ccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence            3455443  3333 788888776555     555788999999999999999886  46999999999999999999999


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE----ecCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~----~~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      +.++.+|...|..+.|+.  .+++++|.|.++.+||+.+...+...    +|...|..+.|+  .+++++++.|.+    
T Consensus       270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRT----  341 (499)
T KOG0281|consen  270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT----  341 (499)
T ss_pred             hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCce----
Confidence            999999999999999974  58999999999999999877643322    488899999996  569999999999    


Q ss_pred             eCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHHHHHHHHHH
Q psy9319         163 DCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKA  242 (432)
Q Consensus       163 d~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka  242 (432)
                          |++|++.++.++.++.||.-.    ..+.         |-.++.   +++++.|-+||+||.+.+.. |.-|....
T Consensus       342 ----ikvW~~st~efvRtl~gHkRG----IACl---------QYr~rl---vVSGSSDntIRlwdi~~G~c-LRvLeGHE  400 (499)
T KOG0281|consen  342 ----IKVWSTSTCEFVRTLNGHKRG----IACL---------QYRDRL---VVSGSSDNTIRLWDIECGAC-LRVLEGHE  400 (499)
T ss_pred             ----EEEEeccceeeehhhhccccc----ceeh---------hccCeE---EEecCCCceEEEEeccccHH-HHHHhchH
Confidence                999999999999999888522    1111         223344   78999999999999987543 44444333


Q ss_pred             hhhCCCcceeeeeeee
Q psy9319         243 LEKNEDEFHTHMINAR  258 (432)
Q Consensus       243 ~~~np~ef~~~m~~~~  258 (432)
                      ....--.|-..-|-+-
T Consensus       401 eLvRciRFd~krIVSG  416 (499)
T KOG0281|consen  401 ELVRCIRFDNKRIVSG  416 (499)
T ss_pred             HhhhheeecCceeeec
Confidence            3333333443333333

>KOG0647|consensus

Probab=99.79  E-value=7.3e-18  Score=154.41  Aligned_cols=225  Identities=13%  Similarity=0.085  Sum_probs=162.0

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee-EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ-NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~-~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ..+.|.+++|||....+++++|||+++++|++.-    +|..+ .....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~----~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQN----SGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEec----CCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            3467899999997777778999999999999873    22222 345678999999999999999999999999999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCC--EEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGA--LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~--~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .+++ +..+-.|.++|.++.|-+...  .|+|||.|.+|+.||+++..++.++..+..|+++..-  ...++++..++.|
T Consensus       102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i  178 (347)
T KOG0647|consen  102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHI  178 (347)
T ss_pred             cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcE
Confidence            9984 567778999999999988554  8999999999999999999999999888888887653  4577778888888


Q ss_pred             EEEeCC------------------ceEEeecCCCceeeeecCCC----chhhhHHhhhcccccccccC-----------c
Q psy9319         160 RKQDCG------------------NLKVFGFLPEPIKKRKRGGT----MSSWVKAAKVNQKTHRERHQ-----------P  206 (432)
Q Consensus       160 ~vwd~~------------------~i~vwd~~~~~~~~~~~g~~----mss~~~a~~~~~~~h~er~q-----------p  206 (432)
                      .+|++.                  .|.++.-..+..+..+.|..    +..-.......=++|+....           -
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            888873                  13333333333333333321    11100001111145553111           1


Q ss_pred             cccccccceeccCcceeecccchhHHHH
Q psy9319         207 EDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       207 ~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                      -...+..+.+...|.+...||-+...++
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kL  286 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKL  286 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhh
Confidence            1223445688899999999988775443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.79  E-value=1.4e-17  Score=155.96  Aligned_cols=199  Identities=23%  Similarity=0.319  Sum_probs=156.3

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+.|.++.|+|++..+ ++++.|+.     +.+|+..++.....+.+|...+.++.|+|++..|++++.++.|.+||+.+
T Consensus         9 ~~~i~~~~~~~~~~~l-~~~~~~g~-----i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           9 TGGVTCVAFSPDGKLL-ATGSGDGT-----IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             CCCEEEEEEcCCCCEE-EEeecCcE-----EEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            3568999999998877 55555554     55566667778888899999999999999999999999999999999998


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      +..+..+..|...+.++.|+|++.++++++.|+.|.+||+.++.....+. |...|.+++|+|++.++++++.++.    
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~----  158 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT----  158 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc----
Confidence            88888888999999999999998889888889999999999888888776 7788999999999999998887998    


Q ss_pred             eCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         163 DCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       163 d~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                          +.+||+.++..+..+..+...           .......|.+..   ++....|..+++||...
T Consensus       159 ----i~i~d~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~---l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         159 ----IKLWDLRTGKCVATLTGHTGE-----------VNSVAFSPDGEK---LLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ----EEEEEccccccceeEecCccc-----------cceEEECCCcCE---EEEecCCCcEEEEECCC
Confidence                555555555555555433211           001111233323   56666699999999875

>KOG0281|consensus

Probab=99.79  E-value=8.5e-20  Score=169.60  Aligned_cols=190  Identities=17%  Similarity=0.202  Sum_probs=153.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT-   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~-   85 (432)
                      |.|+.+..  . +++++|.|.++.     +||..+++++.++-+|...|..+.|+.  .+++++|.|.++.+||+.... 
T Consensus       240 VLCLqyd~--r-viisGSSDsTvr-----vWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~  309 (499)
T KOG0281|consen  240 VLCLQYDE--R-VIVSGSSDSTVR-----VWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD  309 (499)
T ss_pred             EEeeeccc--e-EEEecCCCceEE-----EEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH
Confidence            45555532  2 558888888764     555569999999999999999999984  589999999999999998643 


Q ss_pred             --eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          86 --CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        86 --~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                        +.+.+.||...|+.+.|+  .++++++|.|.+|++|++.+++++.++. |..+|.|+.+.  |+++++|+.|.+    
T Consensus       310 it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDnt----  381 (499)
T KOG0281|consen  310 ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT----  381 (499)
T ss_pred             HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCce----
Confidence              345677999999999995  5699999999999999999999999986 88899998884  899999999999    


Q ss_pred             eCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         163 DCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       163 d~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                          |++||+..|.++..+.||.--  ..++         |.  +.   --++++.-|.+|++||++.....
T Consensus       382 ----IRlwdi~~G~cLRvLeGHEeL--vRci---------RF--d~---krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  382 ----IRLWDIECGACLRVLEGHEEL--VRCI---------RF--DN---KRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             ----EEEEeccccHHHHHHhchHHh--hhhe---------ee--cC---ceeeeccccceEEEEecccccCC
Confidence                888999999999988887421  1111         10  11   22788999999999999875543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.79  E-value=1.3e-17  Score=156.13  Aligned_cols=194  Identities=24%  Similarity=0.360  Sum_probs=154.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|.++.|+|++.++ ++++.|+     .+.+|+..+++....+..|...+.+++|+|++.++++++.++.|.+||+.++.
T Consensus        95 ~i~~~~~~~~~~~~-~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  168 (289)
T cd00200          95 YVSSVAFSPDGRIL-SSSSRDK-----TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK  168 (289)
T ss_pred             cEEEEEEcCCCCEE-EEecCCC-----eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence            57888999986655 5555454     45667777788888899999999999999999999998889999999999888


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      .+..+..|...|.++.|+|++..+++++.|+.|.+||+.++..+..+ .+...+.++.|+|++.++++++.++.      
T Consensus       169 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------  242 (289)
T cd00200         169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT------  242 (289)
T ss_pred             cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc------
Confidence            88899999999999999999999999999999999999999888888 58889999999999989988888998      


Q ss_pred             CceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         165 GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       165 ~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                        +.+|++.++..+..+.++...-           ......|.+..   ++....|..+++|+
T Consensus       243 --i~i~~~~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~---l~~~~~d~~i~iw~  289 (289)
T cd00200         243 --IRVWDLRTGECVQTLSGHTNSV-----------TSLAWSPDGKR---LASGSADGTIRIWD  289 (289)
T ss_pred             --EEEEEcCCceeEEEccccCCcE-----------EEEEECCCCCE---EEEecCCCeEEecC
Confidence              6666666566665555443110           01111233333   77788899999985

>KOG0306|consensus

Probab=99.79  E-value=1.3e-18  Score=175.47  Aligned_cols=203  Identities=20%  Similarity=0.252  Sum_probs=172.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-------cCCcCEEEEEEcCCCCEEEEEeCCCeEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-------AHPVTCICIEFDPTGKYFAVGSKDALVS   77 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-------~h~~~V~~l~~spdg~~L~sgs~dg~I~   77 (432)
                      ..|..++.+|++.-+ ++++.|.++..|++.+-....+..-..+.       .-...|.|+.+||||.+|+.+--|.+|.
T Consensus       455 gaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk  533 (888)
T KOG0306|consen  455 GAIWSISLSPDNKGF-VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK  533 (888)
T ss_pred             cceeeeeecCCCCce-EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence            356788899999887 99999999999999887654443322121       2346799999999999999999999999


Q ss_pred             EEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECC
Q psy9319          78 LWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        78 iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      ||-+++.+...++.||.-||.|+..|||+..++|||.|.+|++|.+.-|.|-..+- |...|.++.|-|....++++|.|
T Consensus       534 VyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD  613 (888)
T KOG0306|consen  534 VYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD  613 (888)
T ss_pred             EEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCc
Confidence            99999999999999999999999999999999999999999999999999988775 99999999999999999999999


Q ss_pred             CeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         157 KYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      +.        ++-||-..-..++.+.||..-.|..++           .|.+++   .++.+.|..||+|....
T Consensus       614 ~k--------vKqWDg~kFe~iq~L~~H~~ev~cLav-----------~~~G~~---vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  614 GK--------VKQWDGEKFEEIQKLDGHHSEVWCLAV-----------SPNGSF---VVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ce--------EEeechhhhhhheeeccchheeeeeEE-----------cCCCCe---EEeccCCceeEeeeccC
Confidence            99        777877777778888888665555444           355666   88999999999995543

>KOG0264|consensus

Probab=99.79  E-value=1.8e-18  Score=165.96  Aligned_cols=209  Identities=15%  Similarity=0.139  Sum_probs=160.7

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecC--cceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC--
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH--KLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA--   82 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~--~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~--   82 (432)
                      ..+.|++...-.+++++.|..+..|++...+..  ...+...+.+|...|..++|+| +..+|++++.|+.+.|||++  
T Consensus       181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~  260 (422)
T KOG0264|consen  181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN  260 (422)
T ss_pred             cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence            346788887777899999999999999876553  2345678899999999999999 67889999999999999999  


Q ss_pred             CCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCC-cEEEEEECCCe
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQ-YLLAYACDDKY  158 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg-~~l~s~s~d~~  158 (432)
                      +.++.....+|++.|+|++|+| ++..|||||.|++|++||+++- .++..+. |...|.++.|+|+. ..|++++.|+.
T Consensus       261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r  340 (422)
T KOG0264|consen  261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR  340 (422)
T ss_pred             CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence            5566777889999999999999 7788999999999999999975 4556665 89999999999964 78999999999


Q ss_pred             EEEEeCCceEE---ee-cCCC--ceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         159 DRKQDCGNLKV---FG-FLPE--PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       159 I~vwd~~~i~v---wd-~~~~--~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      +.|||+..+--   ++ ...|  +++..-.||.....+         +.|-+.    ..+-+++...|-++.+|...
T Consensus       341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D---------fsWnp~----ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD---------FSWNPN----EPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEeccccccccChhhhccCCcceeEEecCccccccc---------ccCCCC----CCeEEEEecCCceEEEeecc
Confidence            88888754321   11 1122  234555566533111         112211    23458899999999999654

>KOG0274|consensus

Probab=99.78  E-value=2.9e-18  Score=176.35  Aligned_cols=195  Identities=18%  Similarity=0.209  Sum_probs=161.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.++++.. +..++++|+.|.+++.|+     ..+|.+.+++.+|...|.|+...  +..+++||.|.+|++|++.++
T Consensus       250 g~V~~l~~~~-~~~~lvsgS~D~t~rvWd-----~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~  321 (537)
T KOG0274|consen  250 GGVWGLAFPS-GGDKLVSGSTDKTERVWD-----CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG  321 (537)
T ss_pred             CCceeEEEec-CCCEEEEEecCCcEEeEe-----cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc
Confidence            3456677755 444559999998775554     56999999999999999998765  457888999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .++.++.+|.++|+++..+  +.++++|+.|++|.+||+.+++++..+. |...|.++.+.+. ..+++|+.|++     
T Consensus       322 ~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-----  393 (537)
T KOG0274|consen  322 ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-----  393 (537)
T ss_pred             ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-----
Confidence            9999999999999999987  7899999999999999999999999997 9999999988765 89999999999     


Q ss_pred             CCceEEeecCCC-ceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         164 CGNLKVFGFLPE-PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       164 ~~~i~vwd~~~~-~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                         |++||+.++ .++..+.+|.+........             ...   ++....|.+|++||.+..+..
T Consensus       394 ---IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-------------~~~---Lvs~~aD~~Ik~WD~~~~~~~  446 (537)
T KOG0274|consen  394 ---IKVWDLRTKRKCIHTLQGHTSLVSSLLLR-------------DNF---LVSSSADGTIKLWDAEEGECL  446 (537)
T ss_pred             ---eEeecCCchhhhhhhhcCCcccccccccc-------------cce---eEeccccccEEEeecccCcee
Confidence               777777777 8888888887655322221             112   778888999999988775543

>KOG0310|consensus

Probab=99.78  E-value=7.6e-18  Score=162.93  Aligned_cols=163  Identities=19%  Similarity=0.248  Sum_probs=135.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~   83 (432)
                      -.+....|+|.+..++++|++|..+     .+||..+...+..+.+|+..|.|.+|+| ++.+++|||.||.|++||+++
T Consensus       111 apv~~~~f~~~d~t~l~s~sDd~v~-----k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  111 APVHVTKFSPQDNTMLVSGSDDKVV-----KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             CceeEEEecccCCeEEEecCCCceE-----EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence            3467788999999999999888755     5555567766668999999999999999 567999999999999999997


Q ss_pred             C-eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 L-TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~-~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      . ..+..+. |..+|.++.+-|.|..|++++++ .|++||+.+| +.+.... |...|+|+++..++..|++|+-|+.++
T Consensus       186 ~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK  263 (487)
T KOG0310|consen  186 LTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK  263 (487)
T ss_pred             CCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence            6 5566665 99999999999999999998755 7999999855 4444454 999999999999999999999999988


Q ss_pred             EEeCCceEE---eecCC
Q psy9319         161 KQDCGNLKV---FGFLP  174 (432)
Q Consensus       161 vwd~~~i~v---wd~~~  174 (432)
                      +||+.+.++   |.+..
T Consensus       264 Vfd~t~~Kvv~s~~~~~  280 (487)
T KOG0310|consen  264 VFDTTNYKVVHSWKYPG  280 (487)
T ss_pred             EEEccceEEEEeeeccc
Confidence            888766544   55443

>KOG0318|consensus

Probab=99.77  E-value=1.4e-17  Score=162.26  Aligned_cols=199  Identities=16%  Similarity=0.181  Sum_probs=164.8

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|++|+|-|..++-+++|+.|.++     .+++-+..+...++..|...|.|+.|+|||.++++++.||.|.+||-.+|.
T Consensus       149 ~ins~~~KpsRPfRi~T~sdDn~v-----~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge  223 (603)
T KOG0318|consen  149 RINSVDFKPSRPFRIATGSDDNTV-----AFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE  223 (603)
T ss_pred             eEeeeeccCCCceEEEeccCCCeE-----EEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence            368999999999989999998765     555666778888999999999999999999999999999999999999999


Q ss_pred             eEEEEe---eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCce----EEEEEccCCcEEEEEECCCe
Q psy9319          86 CIRTFQ---RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT----FTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        86 ~~~~~~---~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V----~~l~fspdg~~l~s~s~d~~  158 (432)
                      .+..+.   +|.+.|++++|+||+..++|+|.|.+++|||+.+..++.++.....|    -.+.|-  ...|++.+.+|+
T Consensus       224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~  301 (603)
T KOG0318|consen  224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGT  301 (603)
T ss_pred             EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcE
Confidence            999988   89999999999999999999999999999999999999988744333    345564  567889999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHH
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKK  233 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~  233 (432)
                              +..++...+..+..+.||.-+-..           ....|++..   +++++-|..|--|+......
T Consensus       302 --------in~ln~~d~~~~~~i~GHnK~ITa-----------Ltv~~d~~~---i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  302 --------INYLNPSDPSVLKVISGHNKSITA-----------LTVSPDGKT---IYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             --------EEEecccCCChhheecccccceeE-----------EEEcCCCCE---EEeeccCceEEEEecCCccc
Confidence                    777777777777888888533211           112344444   89999999999998876543

>KOG0274|consensus

Probab=99.77  E-value=8.2e-18  Score=173.04  Aligned_cols=211  Identities=19%  Similarity=0.183  Sum_probs=168.5

Q ss_pred             eeeeeecCCCceeEEEEeecCcceeeEE-EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEE
Q psy9319          20 QSSVLTDISPKQLDFKFKEHHKLEEQNI-LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR   98 (432)
Q Consensus        20 ~~s~s~D~~~~~~~i~~~d~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~   98 (432)
                      +.+++.|.++     .+|+..++..+.. +.||.+.|.++++...+.+|++|+.|.++++||..+|.|.+++.+|.+.|.
T Consensus       221 ~~~~s~~~tl-----~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~  295 (537)
T KOG0274|consen  221 FKSGSDDSTL-----HLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR  295 (537)
T ss_pred             EEecCCCcee-----EEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE
Confidence            3566666554     6677778888888 999999999999988788999999999999999999999999999999999


Q ss_pred             EEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCce
Q psy9319          99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus        99 ~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      ++...  +.++++||.|.+|++|++.++.++..+. |.++|.++..+  +.++++|+.|++        |.+|++.++++
T Consensus       296 ~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~--------v~VW~~~~~~c  363 (537)
T KOG0274|consen  296 CLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT--------VKVWDPRTGKC  363 (537)
T ss_pred             EEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce--------EEEEEhhhcee
Confidence            98764  4578889999999999999999999998 99999999997  899999999999        88888889999


Q ss_pred             eeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHHHHHHHHHHhhhCCCcceeeeeee
Q psy9319         178 KKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMINA  257 (432)
Q Consensus       178 ~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka~~~np~ef~~~m~~~  257 (432)
                      ++.+.||.-......+             +..  .-+++++-|+.|++||+..+.+.+..|.....-.+--.+++.-+-+
T Consensus       364 l~sl~gH~~~V~sl~~-------------~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs  428 (537)
T KOG0274|consen  364 LKSLSGHTGRVYSLIV-------------DSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVS  428 (537)
T ss_pred             eeeecCCcceEEEEEe-------------cCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEe
Confidence            9999998643222111             110  2278999999999999999865555554433333334455555555


Q ss_pred             eeecc
Q psy9319         258 RLVDG  262 (432)
Q Consensus       258 ~~~~g  262 (432)
                      ...+|
T Consensus       429 ~~aD~  433 (537)
T KOG0274|consen  429 SSADG  433 (537)
T ss_pred             ccccc
Confidence            55455

>KOG0277|consensus

Probab=99.77  E-value=3.3e-18  Score=153.34  Aligned_cols=155  Identities=17%  Similarity=0.162  Sum_probs=130.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|.++.|++.....+.++|||++++.     |+..-...+.++.||...|...+||| .+.+++++|.|+++++||++.
T Consensus       105 ~EV~Svdwn~~~r~~~ltsSWD~TiKL-----W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~  179 (311)
T KOG0277|consen  105 REVYSVDWNTVRRRIFLTSSWDGTIKL-----WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS  179 (311)
T ss_pred             hheEEeccccccceeEEeeccCCceEe-----ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC
Confidence            456889999988777788899998754     55556788999999999999999999 689999999999999999985


Q ss_pred             CeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCC-cEEEEEECCCeE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQ-YLLAYACDDKYD  159 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg-~~l~s~s~d~~I  159 (432)
                      ......+..|...+.|+.|+. +.+.++||+.|+.|++||+++- .++..+. |.-.|+.+.|||.. .+|++++.|-++
T Consensus       180 ~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~  259 (311)
T KOG0277|consen  180 PGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTV  259 (311)
T ss_pred             CCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence            444455889999999999998 7789999999999999999874 4555554 88889999999965 789999999995


Q ss_pred             EEEeC
Q psy9319         160 RKQDC  164 (432)
Q Consensus       160 ~vwd~  164 (432)
                      ||||.
T Consensus       260 riw~~  264 (311)
T KOG0277|consen  260 RIWDP  264 (311)
T ss_pred             Eeccc
Confidence            55554

>KOG0313|consensus

Probab=99.77  E-value=4e-18  Score=160.30  Aligned_cols=198  Identities=18%  Similarity=0.152  Sum_probs=151.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEe--------------------ecCcceeeEEEccCCcCEEEEEEcCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFK--------------------EHHKLEEQNILKAHPVTCICIEFDPTGK   65 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~--------------------d~~~~~~~~~l~~h~~~V~~l~~spdg~   65 (432)
                      .|.++..++++..+ +++|+|.++.+|++..-                    ...+..++.++.||..+|.++.|++ ..
T Consensus       195 ~V~sVsv~~sgtr~-~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~  272 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRF-CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT  272 (423)
T ss_pred             ceeEEEecCCCCeE-EeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence            36778888999887 99999999999982210                    1112356778999999999999998 66


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE--E-EE-EecCCceEEE
Q psy9319          66 YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK--V-YD-ICIQAATFTV  141 (432)
Q Consensus        66 ~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~--~-~~-~~~~~~V~~l  141 (432)
                      .++++|.|.+|+.||+.++.+..++. ....+.|++.+|...+|++||.|..+++||.+++..  + .. +.|...|.++
T Consensus       273 v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv  351 (423)
T KOG0313|consen  273 VIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV  351 (423)
T ss_pred             ceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence            89999999999999999999988887 446799999999999999999999999999997642  2 22 3489999999


Q ss_pred             EEccCC-cEEEEEECCCeEEEEeCCceEEeecCCCc-eeeeecCCCchhhhHHhhhcccccccccCccccccccceeccC
Q psy9319         142 AWHPKQ-YLLAYACDDKYDRKQDCGNLKVFGFLPEP-IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKK  219 (432)
Q Consensus       142 ~fspdg-~~l~s~s~d~~I~vwd~~~i~vwd~~~~~-~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~  219 (432)
                      .|+|.. ..|++|+.|++        +++||+++.. .+..+.+|    .++..+.           +-....++++++.
T Consensus       352 kwsp~~~~~~~S~S~D~t--------~klWDvRS~k~plydI~~h----~DKvl~v-----------dW~~~~~IvSGGa  408 (423)
T KOG0313|consen  352 KWSPTNEFQLVSGSYDNT--------VKLWDVRSTKAPLYDIAGH----NDKVLSV-----------DWNEGGLIVSGGA  408 (423)
T ss_pred             ecCCCCceEEEEEecCCe--------EEEEEeccCCCcceeeccC----CceEEEE-----------eccCCceEEeccC
Confidence            999965 67889999999        5555555433 44555555    1111111           1123456899999


Q ss_pred             cceeecccch
Q psy9319         220 DYRVRADHFN  229 (432)
Q Consensus       220 D~~lR~~d~~  229 (432)
                      |-+||+....
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999987543

>KOG0310|consensus

Probab=99.77  E-value=5.2e-18  Score=164.06  Aligned_cols=194  Identities=18%  Similarity=0.162  Sum_probs=147.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      -+.++.|..+|.++ ++|-.     .+.++++|..+...++.+.+|+.+|..+.|+| ++..|++|++|+.+++||+.+.
T Consensus        70 ~v~s~~fR~DG~Ll-aaGD~-----sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLL-AAGDE-----SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             ceeEEEeecCCeEE-EccCC-----cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            35677788888877 55433     34566777556567888999999999999999 5677889999999999999998


Q ss_pred             eeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC-cEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG-KKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~-~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      .....+.+|+..|+|.+|+| .+..++|||.||.|++||+++. ..+..+.|..+|.++.|-|.|..+++++...     
T Consensus       144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~-----  218 (487)
T KOG0310|consen  144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS-----  218 (487)
T ss_pred             EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe-----
Confidence            87668899999999999999 5668999999999999999987 7788889999999999999999999987653     


Q ss_pred             eCCceEEeecCCCce-eeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         163 DCGNLKVFGFLPEPI-KKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       163 d~~~i~vwd~~~~~~-~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                          +++||+.+|.. +.....|     .+++..      -+...++..   +|+++-|..++++|+
T Consensus       219 ----vkVWDl~~G~qll~~~~~H-----~KtVTc------L~l~s~~~r---LlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  219 ----VKVWDLTTGGQLLTSMFNH-----NKTVTC------LRLASDSTR---LLSGSLDRHVKVFDT  267 (487)
T ss_pred             ----EEEEEecCCceehhhhhcc-----cceEEE------EEeecCCce---EeecccccceEEEEc
Confidence                88888885443 3222212     222211      111112223   777888888887763

>KOG0296|consensus

Probab=99.77  E-value=1.9e-17  Score=155.02  Aligned_cols=155  Identities=12%  Similarity=0.071  Sum_probs=132.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..+++++.+|+.+ ++++++-|--.     .+|+..++.....+.+|...|+|+.||.+|.+||+|..+|.|.||...++
T Consensus        65 ~svFavsl~P~~~-l~aTGGgDD~A-----flW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   65 DSVFAVSLHPNNN-LVATGGGDDLA-----FLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             CceEEEEeCCCCc-eEEecCCCceE-----EEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            3578999999555 44776655433     46667788999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .....+...-..+.-+.|+|.+..|+.|+.||.|++|.+.++.....+. |..++++=.|.|+|+.++++..||+|++|+
T Consensus       139 ~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  139 GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence            8877776566778889999999999999999999999999866556564 899999999999999999999999955555


Q ss_pred             CC
Q psy9319         164 CG  165 (432)
Q Consensus       164 ~~  165 (432)
                      +.
T Consensus       219 ~k  220 (399)
T KOG0296|consen  219 PK  220 (399)
T ss_pred             cC
Confidence            53

>KOG0275|consensus

Probab=99.77  E-value=2.7e-19  Score=164.87  Aligned_cols=163  Identities=21%  Similarity=0.350  Sum_probs=140.2

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEE--------EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT--------FQRLDWPVRAISFSHDGALIASGSEDLTIDIA  121 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~--------~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vw  121 (432)
                      |....+.|..|||||++|++||.||.|.+||..+|+....        |--+..+|.|++||.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            3445688999999999999999999999999998875332        23467899999999999999999999999999


Q ss_pred             eCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccc
Q psy9319         122 HVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKT  199 (432)
Q Consensus       122 d~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~  199 (432)
                      -+.+|.|+..+.  |...|+++.|+.|+..+++++.|.+        +++..+.+|++++.+.||+.  +         .
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t--------vRiHGlKSGK~LKEfrGHsS--y---------v  351 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT--------VRIHGLKSGKCLKEFRGHSS--Y---------V  351 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce--------EEEeccccchhHHHhcCccc--c---------c
Confidence            999999999986  8999999999999999999999999        89999999999999999853  2         2


Q ss_pred             cccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         200 HRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       200 h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                      ...+..+++..   +++.+.|.++++|+....+..
T Consensus       352 n~a~ft~dG~~---iisaSsDgtvkvW~~KtteC~  383 (508)
T KOG0275|consen  352 NEATFTDDGHH---IISASSDGTVKVWHGKTTECL  383 (508)
T ss_pred             cceEEcCCCCe---EEEecCCccEEEecCcchhhh
Confidence            22334456666   899999999999998776554

>KOG0646|consensus

Probab=99.76  E-value=1e-17  Score=161.22  Aligned_cols=211  Identities=17%  Similarity=0.138  Sum_probs=166.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA--   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~--   82 (432)
                      ..|.+++.+|.|.+++++.      ...++++|.+.+|..+..+.+|-.+|+|+.|+-||.+|++||.||.|.+|++.  
T Consensus        82 g~v~al~s~n~G~~l~ag~------i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGT------ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             cceeeeecCCCceEEEeec------ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence            3467899999998875552      44678899999999999999999999999999999999999999999999764  


Q ss_pred             -------CCeeEEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEE
Q psy9319          83 -------ELTCIRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA  153 (432)
Q Consensus        83 -------~~~~~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~  153 (432)
                             +-.+.+.|..|.-+|+++...+.  ..+++|+|.|.++++||+..|..+..+..+..+.+++.+|-++.++.|
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence                   24568889999999999988774  458999999999999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEeCCceE---------EeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceee
Q psy9319         154 CDDKYDRKQDCGNLK---------VFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVR  224 (432)
Q Consensus       154 s~d~~I~vwd~~~i~---------vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR  224 (432)
                      +.+|.|.+.++....         ..+. .+..+..+.||.-.+-.-+.         ...-++..   ++++..|.+++
T Consensus       236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~-~~t~~~~~~Gh~~~~~ITcL---------ais~Dgtl---LlSGd~dg~Vc  302 (476)
T KOG0646|consen  236 TEEGKIFQNLLFKLSGQSAGVNQKGRHE-ENTQINVLVGHENESAITCL---------AISTDGTL---LLSGDEDGKVC  302 (476)
T ss_pred             CCcceEEeeehhcCCccccccccccccc-ccceeeeeccccCCcceeEE---------EEecCccE---EEeeCCCCCEE
Confidence            999998776653322         1221 23445556666542111000         00112333   78999999999


Q ss_pred             cccchhHHHH
Q psy9319         225 ADHFNKKKKT  234 (432)
Q Consensus       225 ~~d~~~k~~~  234 (432)
                      +||...++..
T Consensus       303 vWdi~S~Q~i  312 (476)
T KOG0646|consen  303 VWDIYSKQCI  312 (476)
T ss_pred             EEecchHHHH
Confidence            9999886544

>KOG0640|consensus

Probab=99.76  E-value=1.6e-18  Score=159.06  Aligned_cols=203  Identities=20%  Similarity=0.196  Sum_probs=157.1

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEe------------ecCcc-eeeEEEccCCcCEEEEEEcCCCCEEEEEeCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFK------------EHHKL-EEQNILKAHPVTCICIEFDPTGKYFAVGSKD   73 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~------------d~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d   73 (432)
                      +.+.+|+|+|.++ ++++.|.++++.++.-.            +.... ..+++|..|...|+++.|+|-...|++|+.|
T Consensus       115 cR~aafs~DG~lv-ATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD  193 (430)
T KOG0640|consen  115 CRAAAFSPDGSLV-ATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD  193 (430)
T ss_pred             eeeeeeCCCCcEE-EccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence            4677899999877 99999999998887611            11111 3467888999999999999999999999999


Q ss_pred             CeEEEEeCCCCeeE--EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE----ecCCceEEEEEccCC
Q psy9319          74 ALVSLWDAAELTCI--RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQ  147 (432)
Q Consensus        74 g~I~iwd~~~~~~~--~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~----~~~~~V~~l~fspdg  147 (432)
                      ++|++||+.....-  +.......+|.+++|+|.|.+|+.|..-.++++||+.+-+|...-    .|.+.|+++.+++.|
T Consensus       194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~  273 (430)
T KOG0640|consen  194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG  273 (430)
T ss_pred             CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence            99999999753321  112224568999999999999999999999999999999887654    388889999999999


Q ss_pred             cEEEEEECCCeEEEEeCCceEEeecCCCceeeeec-CCCchhhhHHhhhcccccccccCccccccccceeccCcceeecc
Q psy9319         148 YLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR-GGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRAD  226 (432)
Q Consensus       148 ~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~-g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~  226 (432)
                      ++.++++.||.        |++||-.++.|+.++. .|--++...++.          .-.+++   +|+..+|-++.+|
T Consensus       274 ~lYvTaSkDG~--------IklwDGVS~rCv~t~~~AH~gsevcSa~F----------tkn~ky---iLsSG~DS~vkLW  332 (430)
T KOG0640|consen  274 SLYVTASKDGA--------IKLWDGVSNRCVRTIGNAHGGSEVCSAVF----------TKNGKY---ILSSGKDSTVKLW  332 (430)
T ss_pred             cEEEEeccCCc--------EEeeccccHHHHHHHHhhcCCceeeeEEE----------ccCCeE---EeecCCcceeeee
Confidence            99999999999        7888877777766553 332222221111          123344   8999999999999


Q ss_pred             cchhH
Q psy9319         227 HFNKK  231 (432)
Q Consensus       227 d~~~k  231 (432)
                      .....
T Consensus       333 Ei~t~  337 (430)
T KOG0640|consen  333 EISTG  337 (430)
T ss_pred             eecCC
Confidence            76554

>KOG0293|consensus

Probab=99.76  E-value=1.9e-17  Score=157.12  Aligned_cols=205  Identities=12%  Similarity=0.107  Sum_probs=164.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA-HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|..+.|+|++..+ .+|+.|..     +.+||+.+|.+...+.. |...+.+++|.|||..+++|+.|++|..||++ 
T Consensus       270 ~~V~yi~wSPDdryL-laCg~~e~-----~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-  342 (519)
T KOG0293|consen  270 QPVSYIMWSPDDRYL-LACGFDEV-----LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-  342 (519)
T ss_pred             CceEEEEECCCCCeE-EecCchHh-----eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-
Confidence            456788999999987 66666654     67788889988777653 46789999999999999999999999999997 


Q ss_pred             CeeEEEEeeCC-CCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          84 LTCIRTFQRLD-WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        84 ~~~~~~~~~h~-~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      |.......+-. ..|.+++.++||.++++.+.|..|++++.++..+...+....+|++++.|.+|+++++.-.+..|++|
T Consensus       343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW  422 (519)
T KOG0293|consen  343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW  422 (519)
T ss_pred             cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence            44444454433 46999999999999999999999999999888777777788889999999999999988889999999


Q ss_pred             eCC-------------------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccC
Q psy9319         163 DCG-------------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQ  205 (432)
Q Consensus       163 d~~-------------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~q  205 (432)
                      |+.                                     .|++|+..+|.++..+.||++..           .-....
T Consensus       423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v-----------NcVswN  491 (519)
T KOG0293|consen  423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV-----------NCVSWN  491 (519)
T ss_pred             ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee-----------eEEecC
Confidence            973                                     39999999999999999998532           112222


Q ss_pred             ccccccccceeccCcceeecccch
Q psy9319         206 PEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       206 p~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      |....  -+-+++.|.+||+|-..
T Consensus       492 P~~p~--m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  492 PADPE--MFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCCHH--HhhccCCCCeEEEecCC
Confidence            33222  14678999999999543

>KOG0316|consensus

Probab=99.75  E-value=2.6e-17  Score=146.10  Aligned_cols=123  Identities=22%  Similarity=0.281  Sum_probs=117.3

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      +....+..|.++|.++.|+-||++.++++.|.+|++|+...|.++.++.+|...|..++.+.|...|++|+.|..|.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         123 VESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       123 ~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +.+|+.+..+. |.+.|..+.|+.+...+++|+-|..+++||-+
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR  131 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR  131 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence            99999999997 99999999999999999999999999999964

>KOG0973|consensus

Probab=99.75  E-value=1.2e-17  Score=174.97  Aligned_cols=160  Identities=21%  Similarity=0.271  Sum_probs=139.5

Q ss_pred             cccccccCCCCcceeeeee--ecCCCceeEEEEe-------ecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeE
Q psy9319           6 FIPLLGLNPRPSLYQSSVL--TDISPKQLDFKFK-------EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALV   76 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s--~D~~~~~~~i~~~-------d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I   76 (432)
                      .|+.++++|++..+ ++|.  .|+.+.+|.....       +..-.+.+.+...|.+.|+|+.|+|||++||+||+|+.|
T Consensus        15 ~IfSIdv~pdg~~~-aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v   93 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKF-ATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV   93 (942)
T ss_pred             eEEEEEecCCceeE-ecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence            37899999999988 7777  7887777776532       111235677888999999999999999999999999999


Q ss_pred             EEEeCCC------------------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCc
Q psy9319          77 SLWDAAE------------------LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAA  137 (432)
Q Consensus        77 ~iwd~~~------------------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~  137 (432)
                      .||....                  .+++..+.+|.+.|..++|+|++.+|++++.|++|.+|+..+...+..+. |.+.
T Consensus        94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~  173 (942)
T KOG0973|consen   94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL  173 (942)
T ss_pred             EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc
Confidence            9998762                  23678889999999999999999999999999999999999998888886 9999


Q ss_pred             eEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         138 TFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       138 V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      |..+.|+|-|++|++-+.|++|.||.+.+
T Consensus       174 VKGvs~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  174 VKGVSWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             ccceEECCccCeeeeecCCceEEEEEccc
Confidence            99999999999999999999999988755

>KOG0294|consensus

Probab=99.75  E-value=2.9e-17  Score=151.33  Aligned_cols=195  Identities=14%  Similarity=0.171  Sum_probs=149.0

Q ss_pred             eeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCeeEEEEeeCCCC
Q psy9319          19 YQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGK--YFAVGSKDALVSLWDAAELTCIRTFQRLDWP   96 (432)
Q Consensus        19 l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~--~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~   96 (432)
                      ++++++.|-++     .+||......+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+...+.++.++.+|.+.
T Consensus        55 ~~aSGssDetI-----~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~  129 (362)
T KOG0294|consen   55 YVASGSSDETI-----HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ  129 (362)
T ss_pred             eEeccCCCCcE-----EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence            45788777765     4555667888889999999999999999664  8999999999999999999999999999999


Q ss_pred             EEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC-----------
Q psy9319          97 VRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG-----------  165 (432)
Q Consensus        97 V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~-----------  165 (432)
                      |+.++.+|.|++-++.+.|+.+++||+-.|..-..+........+.|+|.|.+++.++.++ |-+|.+.           
T Consensus       130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~  208 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP  208 (362)
T ss_pred             cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc
Confidence            9999999999999999999999999999888766665555555588999988877777654 5566542           


Q ss_pred             ---------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceee
Q psy9319         166 ---------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVR  224 (432)
Q Consensus       166 ---------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR  224 (432)
                                           .|.+||.+++.+...+.+|....-.         -.....|++.+   +.+.+.|..|+
T Consensus       209 ~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~---------i~~~~~~~~~~---lvTaSSDG~I~  276 (362)
T KOG0294|consen  209 KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD---------IASYTNPEHEY---LVTASSDGFIK  276 (362)
T ss_pred             ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheee---------eEEEecCCceE---EEEeccCceEE
Confidence                                 2555666555555555555321100         00111233334   88999999999


Q ss_pred             cccchhH
Q psy9319         225 ADHFNKK  231 (432)
Q Consensus       225 ~~d~~~k  231 (432)
                      +||....
T Consensus       277 vWd~~~~  283 (362)
T KOG0294|consen  277 VWDIDME  283 (362)
T ss_pred             EEEcccc
Confidence            9988763

>KOG0305|consensus

Probab=99.75  E-value=1.7e-17  Score=165.59  Aligned_cols=200  Identities=18%  Similarity=0.237  Sum_probs=164.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+   ...+++++.|+.+..++++.-.    ..+.++.+|...|..+.|++|+.+||+|+.|+.+.|||....
T Consensus       261 ~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~----~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  261 SRVGSLAWN---SSVLSSGSRDGKILNHDVRISQ----HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             ceeEEEecc---CceEEEecCCCcEEEEEEecch----hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence            457788888   3345889999988888887532    222248999999999999999999999999999999999888


Q ss_pred             eeEEEEeeCCCCEEEEEEee-CCCEEEEEe--CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSH-DGALIASGS--EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs--~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      .+...+..|...|..++|+| ...+||+|+  .|++|++||..+|..+..+...+.|.++.|++..+-|+++.....   
T Consensus       334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~---  410 (484)
T KOG0305|consen  334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE---  410 (484)
T ss_pred             cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCC---
Confidence            88999999999999999999 778999886  599999999999999999999999999999999987777654332   


Q ss_pred             EeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         162 QDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       162 wd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                         +.|.+|+..+-..+..+.||..-.+.           --..|++..   ++.+..|-++|+|+.-..
T Consensus       411 ---n~i~lw~~ps~~~~~~l~gH~~RVl~-----------la~SPdg~~---i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  411 ---NQITLWKYPSMKLVAELLGHTSRVLY-----------LALSPDGET---IVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ---CcEEEEeccccceeeeecCCcceeEE-----------EEECCCCCE---EEEecccCcEEeccccCC
Confidence               34888888887788888888653222           233466666   899999999999987764

>KOG0289|consensus

Probab=99.75  E-value=2.7e-17  Score=156.95  Aligned_cols=156  Identities=19%  Similarity=0.214  Sum_probs=134.9

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |.++.++|+.... .+++.|     ..|++|......+...+..|..+|+.+..+|.|.||++++.|++..+.|+.+|.+
T Consensus       264 i~~v~~~~~~~~v-~~aSad-----~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~  337 (506)
T KOG0289|consen  264 ITSVKFHKDLDTV-ITASAD-----EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ  337 (506)
T ss_pred             EEEEEeccchhhe-eecCCc-----ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence            5667778877655 555544     4567777767778888899999999999999999999999999999999999998


Q ss_pred             EEEEeeC--CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          87 IRTFQRL--DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        87 ~~~~~~h--~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      +......  .-.+++.+|+|||-+|.+|..|+.|+|||+.++..+..|+ |.++|..++|+.+|.+|++++.|+.|++||
T Consensus       338 lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  338 LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD  417 (506)
T ss_pred             EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence            7666532  2458999999999999999999999999999999999887 999999999999999999999999999999


Q ss_pred             CCceE
Q psy9319         164 CGNLK  168 (432)
Q Consensus       164 ~~~i~  168 (432)
                      ++..+
T Consensus       418 LRKl~  422 (506)
T KOG0289|consen  418 LRKLK  422 (506)
T ss_pred             ehhhc
Confidence            87654

>KOG0318|consensus

Probab=99.75  E-value=7.1e-17  Score=157.37  Aligned_cols=165  Identities=16%  Similarity=0.234  Sum_probs=143.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..|.+++|++++..+++.+  ++.-+.+.+-+||  +|..+-.+.||...|.+++|-|.- -.+++|++|++|.+|.-..
T Consensus       104 G~I~Di~Wd~ds~RI~avG--EGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP  179 (603)
T KOG0318|consen  104 GPIKDISWDFDSKRIAAVG--EGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP  179 (603)
T ss_pred             cccccceeCCCCcEEEEEe--cCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC
Confidence            4578999999998875443  5666667777777  678889999999999999999954 4589999999999999887


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe----cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC----IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~----~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .+.-.++..|...|+|+.|+|||..+++++.||.|.+||-.+|+.+..+.    |.+.|++++|+||+..+++++.|.+ 
T Consensus       180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-  258 (603)
T KOG0318|consen  180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-  258 (603)
T ss_pred             eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-
Confidence            77788888999999999999999999999999999999999999999885    8999999999999999999999999 


Q ss_pred             EEEeCCceEEeecCCCceeeee
Q psy9319         160 RKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                             +++||+.++.+++++
T Consensus       259 -------~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  259 -------IKIWDVSTNSLVSTW  273 (603)
T ss_pred             -------EEEEEeeccceEEEe
Confidence                   666666666666554

>KOG0643|consensus

Probab=99.75  E-value=1.4e-16  Score=143.80  Aligned_cols=196  Identities=16%  Similarity=0.225  Sum_probs=154.2

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|..+.++.+|.++ .+|+.|.+...|     -..+|+.+-++.||++.|+|++.+.+...+++|+.|.++++||+.+|+
T Consensus        12 plTqiKyN~eGDLl-FscaKD~~~~vw-----~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen   12 PLTQIKYNREGDLL-FSCAKDSTPTVW-----YSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             ccceEEecCCCcEE-EEecCCCCceEE-----EecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            36778899999987 888888877554     445899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEeCC-------CCcEEEEEe-cCCceEEEEEccCCcEEEE
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSED-----LTIDIAHVE-------SGKKVYDIC-IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-----g~V~vwd~~-------~~~~~~~~~-~~~~V~~l~fspdg~~l~s  152 (432)
                      ++.++. ...+|..+.|+++|++++.+..+     +.|.++|++       +..+...+. +.+.+..+.|+|-+.+|++
T Consensus        86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            999887 66789999999999988776543     679999998       345566565 7788999999999999999


Q ss_pred             EECCCeEEEEeCCceEEeecCCCce-eeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPI-KKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~-~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      |..||.        |..||+.+|.. +.+..-|.. .+..          -+..|....   ++++++|-+-.+||...
T Consensus       165 Ghe~G~--------is~~da~~g~~~v~s~~~h~~-~Ind----------~q~s~d~T~---FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  165 GHEDGS--------ISIYDARTGKELVDSDEEHSS-KIND----------LQFSRDRTY---FITGSKDTTAKLVDVRT  221 (327)
T ss_pred             ecCCCc--------EEEEEcccCceeeechhhhcc-cccc----------ccccCCcce---EEecccCccceeeeccc
Confidence            999999        56666666533 222222221 1111          122344444   89999999999999865

>KOG0641|consensus

Probab=99.75  E-value=4.1e-17  Score=143.97  Aligned_cols=204  Identities=19%  Similarity=0.255  Sum_probs=149.6

Q ss_pred             cccccccCCCCcceeeeeeecCCCce-----------------------------------------------eEEEEee
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQ-----------------------------------------------LDFKFKE   38 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~-----------------------------------------------~~i~~~d   38 (432)
                      .|.|.+|+|.|.++ ++++.|.++..                                               ..|++-|
T Consensus        91 siyc~~ws~~geli-atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td  169 (350)
T KOG0641|consen   91 SIYCTAWSPCGELI-ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD  169 (350)
T ss_pred             cEEEEEecCccCeE-EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence            46788888888766 77777766544                                               2233334


Q ss_pred             cCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEee--C-----CCCEEEEEEeeCCCEEEE
Q psy9319          39 HHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR--L-----DWPVRAISFSHDGALIAS  111 (432)
Q Consensus        39 ~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~--h-----~~~V~~i~~spdg~~l~s  111 (432)
                      ...|+..+.+.||++-|.++ ++.+|-++++|+.|.+|++||++-..++.++..  |     .+.|.++++.|.|++|++
T Consensus       170 c~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s  248 (350)
T KOG0641|consen  170 CGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS  248 (350)
T ss_pred             cCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence            45667778888999999877 566789999999999999999998888877642  2     257999999999999999


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhh
Q psy9319         112 GSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWV  190 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~  190 (432)
                      |-.|..+.+||++.+..+..+. |...|.++.|+|...++++|+.|..|++-|+        .. .+.+     ..+++.
T Consensus       249 g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl--------qg-dla~-----el~~~v  314 (350)
T KOG0641|consen  249 GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL--------QG-DLAH-----ELPIMV  314 (350)
T ss_pred             ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec--------cc-chhh-----cCceEE
Confidence            9999999999999999999886 8899999999999999999999999555544        32 1111     111111


Q ss_pred             HHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       191 ~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      .+- ...+.-..|..|.   .+.+++.+.|.+..+|.++
T Consensus       315 v~e-hkdk~i~~rwh~~---d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  315 VAE-HKDKAIQCRWHPQ---DFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEe-ccCceEEEEecCc---cceeeeccCcceEEEeccC
Confidence            100 0111122233332   3458899999999999765

>KOG0306|consensus

Probab=99.74  E-value=1.2e-17  Score=168.49  Aligned_cols=156  Identities=18%  Similarity=0.211  Sum_probs=141.1

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+-|.|+.+||++.++ +.+.-|.++.+     +-..+.+...+|.||.-||.|+..|||+.++++||.|.+|++|-++=
T Consensus       508 ~ddvL~v~~Spdgk~L-aVsLLdnTVkV-----yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  508 EDDVLCVSVSPDGKLL-AVSLLDNTVKV-----YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             cccEEEEEEcCCCcEE-EEEeccCeEEE-----EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence            3668899999999987 66666766644     44458899999999999999999999999999999999999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      |.|-..|.+|...|.++.|.|....+.+++.|+.|+-||-..-.++..+. |...|++++.+|+|.+++++|.|.+|++|
T Consensus       582 GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  582 GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence            99999999999999999999999999999999999999999988888886 99999999999999999999999997777


Q ss_pred             eCC
Q psy9319         163 DCG  165 (432)
Q Consensus       163 d~~  165 (432)
                      ...
T Consensus       662 E~t  664 (888)
T KOG0306|consen  662 ERT  664 (888)
T ss_pred             ecc
Confidence            653

>KOG0302|consensus

Probab=99.74  E-value=1.7e-17  Score=155.93  Aligned_cols=151  Identities=23%  Similarity=0.287  Sum_probs=117.5

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcce---eeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE---EQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~---~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..+.|||...--+.++  |.   ...|++|...++.   -...+.+|+..|-.++||| ....|+|||.||+|+|||++.
T Consensus       215 y~LdWSp~~~g~LlsG--Dc---~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs  289 (440)
T KOG0302|consen  215 YGLDWSPIKTGRLLSG--DC---VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS  289 (440)
T ss_pred             eeeecccccccccccC--cc---ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence            4577888432212332  22   2345566555542   2345778999999999999 557899999999999999998


Q ss_pred             C---eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC---CcEEEEEe-cCCceEEEEEccC-CcEEEEEEC
Q psy9319          84 L---TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES---GKKVYDIC-IQAATFTVAWHPK-QYLLAYACD  155 (432)
Q Consensus        84 ~---~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~---~~~~~~~~-~~~~V~~l~fspd-g~~l~s~s~  155 (432)
                      +   .++.+ ..|.+.|+-|+|+..-.+||+|+.||++.|||+++   ++++..+. |..+|+++.|+|. ...|++++.
T Consensus       290 ~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  290 GPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             CCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence            7   34433 78999999999999888999999999999999974   67888887 9999999999995 467888889


Q ss_pred             CCeEEEEeC
Q psy9319         156 DKYDRKQDC  164 (432)
Q Consensus       156 d~~I~vwd~  164 (432)
                      |..|.+||+
T Consensus       369 D~QitiWDl  377 (440)
T KOG0302|consen  369 DNQITIWDL  377 (440)
T ss_pred             CCcEEEEEe
Confidence            999666665

>KOG0296|consensus

Probab=99.74  E-value=9.6e-17  Score=150.39  Aligned_cols=169  Identities=19%  Similarity=0.291  Sum_probs=147.1

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      ..+.+|..|+.+|.+++.+|+.+++++|+.|..-.||++.+|.....+.+|...|+++.||.||.+||||+.+|.|.||.
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccc
Q psy9319         123 VESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHR  201 (432)
Q Consensus       123 ~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~  201 (432)
                      ..++.....+. .-..+.-+.|||.+.+|+.|+.||.        +.+|.+.++...+.+.||...           +.-
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGs--------vWmw~ip~~~~~kv~~Gh~~~-----------ct~  195 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGS--------VWMWQIPSQALCKVMSGHNSP-----------CTC  195 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCCc--------EEEEECCCcceeeEecCCCCC-----------ccc
Confidence            99999888886 5666888999999999999999999        788888877777778887532           222


Q ss_pred             cccCccccccccceeccCcceeecccchhHHH
Q psy9319         202 ERHQPEDRRKLGLLEKKKDYRVRADHFNKKKK  233 (432)
Q Consensus       202 er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~  233 (432)
                      -+..|.+..   ++++..|.+||+|+....+.
T Consensus       196 G~f~pdGKr---~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  196 GEFIPDGKR---ILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             ccccCCCce---EEEEecCceEEEEecCCCce
Confidence            333466666   89999999999998876543

>KOG0267|consensus

Probab=99.74  E-value=2.3e-18  Score=173.10  Aligned_cols=185  Identities=17%  Similarity=0.198  Sum_probs=152.6

Q ss_pred             ceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCE
Q psy9319          18 LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV   97 (432)
Q Consensus        18 ~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V   97 (432)
                      .+++++.+|..+..|.+.     ..-.+..|.+|.++|-|+.|+++..+|++|+.+|+|++||+..+..++++.+|...+
T Consensus        41 r~~~~Gg~~~k~~L~~i~-----kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~  115 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWAIG-----KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNI  115 (825)
T ss_pred             eeeccCCCceeecccccc-----CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCc
Confidence            344777777777666665     233444689999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319          98 RAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus        98 ~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                      .++.|+|-+.+.++|+.|+.+++||++...|...+. |...|..+.|+|+|+++++++.|..        +++||+..|.
T Consensus       116 ~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t--------vki~d~~agk  187 (825)
T KOG0267|consen  116 TSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT--------VKIWDLTAGK  187 (825)
T ss_pred             ceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce--------eeeecccccc
Confidence            999999999999999999999999999888888886 8888999999999999999999998        8888888888


Q ss_pred             eeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         177 IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       177 ~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      ++..|.+|....           +.....|   ..+-+-.++.|.++|+||..
T Consensus       188 ~~~ef~~~e~~v-----------~sle~hp---~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  188 LSKEFKSHEGKV-----------QSLEFHP---LEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             cccccccccccc-----------cccccCc---hhhhhccCCCCceeeeeccc
Confidence            888777664321           1111222   22335677889999999886

>KOG1407|consensus

Probab=99.74  E-value=5.4e-17  Score=146.06  Aligned_cols=162  Identities=51%  Similarity=0.875  Sum_probs=136.6

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .++.+.|+.++.+++.+.      ..+.+.+...+..+++.++++|.....|+.|+|+|++||+|+.|..+.+||+...-
T Consensus       149 e~ne~~w~~~nd~Fflt~------GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi  222 (313)
T KOG1407|consen  149 EVNEISWNNSNDLFFLTN------GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI  222 (313)
T ss_pred             eeeeeeecCCCCEEEEec------CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence            356677776666665552      33556666667889999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeE-EEEeC
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYD-RKQDC  164 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I-~vwd~  164 (432)
                      |+..+..+..+|+.++||.||++||+||.|..|-|=++.+|..+..+++.++...++|+|...+||.++.|..- +--+.
T Consensus       223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~rea  302 (313)
T KOG1407|consen  223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREA  302 (313)
T ss_pred             hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999877541 11122


Q ss_pred             CceEEeecC
Q psy9319         165 GNLKVFGFL  173 (432)
Q Consensus       165 ~~i~vwd~~  173 (432)
                      +.++++.+.
T Consensus       303 g~vKiFG~~  311 (313)
T KOG1407|consen  303 GTVKIFGLS  311 (313)
T ss_pred             ceeEEecCC
Confidence            345555443

>KOG0265|consensus

Probab=99.73  E-value=4e-17  Score=149.47  Aligned_cols=154  Identities=18%  Similarity=0.181  Sum_probs=135.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|..+.|.++++.+ .+|+.|.++     ..||..+|++.+.+++|...|+++.-+.-| .++.+|+.|++++|||+++
T Consensus        91 gAVM~l~~~~d~s~i-~S~gtDk~v-----~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   91 GAVMELHGMRDGSHI-LSCGTDKTV-----RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             ceeEeeeeccCCCEE-EEecCCceE-----EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            457889999999988 888888866     556667999999999999999999744444 5678899999999999998


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      ..++.++. ..-.++++.|..++..+.+|+-|+.|++||++.+..+..+. |..+|+.+..+|+|.++.+-+-|.++++|
T Consensus       165 k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw  243 (338)
T KOG0265|consen  165 KEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW  243 (338)
T ss_pred             cchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEE
Confidence            88887775 45679999999999999999999999999999999999887 99999999999999999999999998888


Q ss_pred             eCC
Q psy9319         163 DCG  165 (432)
Q Consensus       163 d~~  165 (432)
                      |.+
T Consensus       244 d~r  246 (338)
T KOG0265|consen  244 DVR  246 (338)
T ss_pred             Eec
Confidence            853

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.73  E-value=1.6e-16  Score=173.79  Aligned_cols=153  Identities=16%  Similarity=0.109  Sum_probs=125.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEc-CCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD-PTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~s-pdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..|.+++|+|....++++++.|+.+..     ||..++..+..+..+ ..|.++.|+ ++|.+|++|+.||.|++||+.+
T Consensus       576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~i-----Wd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        576 KRVWSIDYSSADPTLLASGSDDGSVKL-----WSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             CCEEEEEEcCCCCCEEEEEcCCCEEEE-----EECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            457899999854445588888876654     555577778888765 678999995 4799999999999999999987


Q ss_pred             Ce-eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC------cEEEEEe-cCCceEEEEEccCCcEEEEEEC
Q psy9319          84 LT-CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG------KKVYDIC-IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        84 ~~-~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~------~~~~~~~-~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      +. .+..+.+|...|.++.|. ++.+|++++.|++|++||+..+      .++..+. |...+.+++|+|++.+|++|+.
T Consensus       650 ~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        650 PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            65 467788999999999997 6789999999999999999743      4566665 7788999999999999999999


Q ss_pred             CCeEEEEeC
Q psy9319         156 DKYDRKQDC  164 (432)
Q Consensus       156 d~~I~vwd~  164 (432)
                      |+.|.+|+.
T Consensus       729 D~~v~iw~~  737 (793)
T PLN00181        729 TNEVFVYHK  737 (793)
T ss_pred             CCEEEEEEC
Confidence            999666665

>KOG0973|consensus

Probab=99.73  E-value=4.3e-17  Score=170.86  Aligned_cols=265  Identities=17%  Similarity=0.176  Sum_probs=180.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEE------E-------eecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFK------F-------KEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS   71 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~------~-------~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs   71 (432)
                      .+|.|+.|+|+|..+ ++|++|..+.+|...      +       .++...+++..+.+|...|..++|+|++.+|++++
T Consensus        70 ~sv~CVR~S~dG~~l-AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   70 GSVNCVRFSPDGSYL-ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS  148 (942)
T ss_pred             CceeEEEECCCCCeE-eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence            468999999999987 999999998888877      1       13445578899999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-------cCCceEEEEEc
Q psy9319          72 KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-------IQAATFTVAWH  144 (432)
Q Consensus        72 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-------~~~~V~~l~fs  144 (432)
                      .|++|.||+..++.++..+.+|.+.|-.+.|.|-|+|||+-++|++|+||.+.+......+.       ...-+..+.||
T Consensus       149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence            99999999999999999999999999999999999999999999999999987766666664       12337789999


Q ss_pred             cCCcEEEEEEC-CCeEEEEeCCceEEeecCCCceeeeecCCCch----hhhHHhhhcccccccccCccccccc-cceecc
Q psy9319         145 PKQYLLAYACD-DKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMS----SWVKAAKVNQKTHRERHQPEDRRKL-GLLEKK  218 (432)
Q Consensus       145 pdg~~l~s~s~-d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~ms----s~~~a~~~~~~~h~er~qp~~r~~~-glLe~~  218 (432)
                      |||.+|++... .+.     ...+.+.+-.+-..-..+-||...    -+...+........-..+|.  ..+ -+-.++
T Consensus       229 PDG~~las~nA~n~~-----~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~--~~y~i~AvgS  301 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGG-----KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN--CYYCIAAVGS  301 (942)
T ss_pred             CCcCeecchhhccCC-----cceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC--cceEEEEEec
Confidence            99999998642 111     012344433333334455566531    11111111111111222222  122 345678


Q ss_pred             CcceeecccchhHHHHH--HHHHHH---HhhhCCCcceeeeeeeeeecc----eeeeCCCCCCCCCHHHHH
Q psy9319         219 KDYRVRADHFNKKKKTL--QILKKK---ALEKNEDEFHTHMINARLVDG----EHFENPKPEAEDSEEQKL  280 (432)
Q Consensus       219 ~D~~lR~~d~~~k~~~l--~~L~~k---a~~~np~ef~~~m~~~~~~~g----~~~~~~~~~~~~~~~~~~  280 (432)
                      .|..|-+|..-.....+  ..|-.+   .....||+|-.-.++   .||    .|++..+=.+.+++|++.
T Consensus       302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS---~DGtV~~i~Fee~ElG~~ls~ee~~  369 (942)
T KOG0973|consen  302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS---LDGTVALIHFEEKELGVALSEEEIS  369 (942)
T ss_pred             CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe---cCCeEEEEEcchHHhCcccChhhhc
Confidence            99999999774433332  222111   244679998544332   244    222222111257777765

>KOG0264|consensus

Probab=99.73  E-value=3.2e-17  Score=157.50  Aligned_cols=157  Identities=20%  Similarity=0.288  Sum_probs=128.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..|..++|+|.+..++++++.|+...+|+.+.+   +.++.....+|++.|.|++|+| ++..||+||.|++|++||+++
T Consensus       228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~---~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN---TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             cceehhhccccchhhheeecCCCeEEEEEcCCC---CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence            346889999999989899999998888888763   5577788899999999999999 667889999999999999986


Q ss_pred             C-eeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC------------cE--EEEE-ecCCceEEEEEccC
Q psy9319          84 L-TCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG------------KK--VYDI-CIQAATFTVAWHPK  146 (432)
Q Consensus        84 ~-~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~------------~~--~~~~-~~~~~V~~l~fspd  146 (432)
                      . .+++++.+|...|.++.||| ....||+++.|+.+.|||+..-            .+  +... +|...|..+.|+|.
T Consensus       305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN  384 (422)
T ss_pred             cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence            4 46889999999999999999 4568899999999999998531            11  2222 27788999999998


Q ss_pred             CcE-EEEEECCCeEEEEeC
Q psy9319         147 QYL-LAYACDDKYDRKQDC  164 (432)
Q Consensus       147 g~~-l~s~s~d~~I~vwd~  164 (432)
                      ..+ |++.+.|+.+.||..
T Consensus       385 ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  385 EPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             CCeEEEEecCCceEEEeec
Confidence            755 566678888555554

>KOG0308|consensus

Probab=99.72  E-value=6.3e-18  Score=168.22  Aligned_cols=209  Identities=17%  Similarity=0.181  Sum_probs=167.5

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeec-CcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH-HKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~-~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      .|+...+..++.+..++.+++.|+.++.|.+..-.. ........++.|+..|+.++...+|+.|+|+|.|.+|++|+..
T Consensus        24 v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~  103 (735)
T KOG0308|consen   24 VNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH  103 (735)
T ss_pred             ccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence            444457777776666778999999888888764221 1123477889999999999999999999999999999999998


Q ss_pred             CC--eeEEEEeeCCCCEEEEEE-eeCCCEEEEEeCCCeEEEEeCCCCcE--EEEE----------ecCCceEEEEEccCC
Q psy9319          83 EL--TCIRTFQRLDWPVRAISF-SHDGALIASGSEDLTIDIAHVESGKK--VYDI----------CIQAATFTVAWHPKQ  147 (432)
Q Consensus        83 ~~--~~~~~~~~h~~~V~~i~~-spdg~~l~sgs~dg~V~vwd~~~~~~--~~~~----------~~~~~V~~l~fspdg  147 (432)
                      .+  .|..++..|...|.|+++ -++...+|+|+-|+.|.+||+.++..  +..+          ++..+|++++.++.|
T Consensus       104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~  183 (735)
T KOG0308|consen  104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG  183 (735)
T ss_pred             cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence            76  678888999999999999 77888999999999999999998733  2222          255679999999999


Q ss_pred             cEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         148 YLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       148 ~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                      ..+++|+..+.        +++||-.++..+..+.||+--           ....+..++++.   +|+++.|.+||+||
T Consensus       184 t~ivsGgtek~--------lr~wDprt~~kimkLrGHTdN-----------Vr~ll~~dDGt~---~ls~sSDgtIrlWd  241 (735)
T KOG0308|consen  184 TIIVSGGTEKD--------LRLWDPRTCKKIMKLRGHTDN-----------VRVLLVNDDGTR---LLSASSDGTIRLWD  241 (735)
T ss_pred             eEEEecCcccc--------eEEeccccccceeeeeccccc-----------eEEEEEcCCCCe---EeecCCCceEEeee
Confidence            99999999998        788888888888888888542           222333456666   89999999999999


Q ss_pred             chhHHHH
Q psy9319         228 FNKKKKT  234 (432)
Q Consensus       228 ~~~k~~~  234 (432)
                      .......
T Consensus       242 LgqQrCl  248 (735)
T KOG0308|consen  242 LGQQRCL  248 (735)
T ss_pred             cccccee
Confidence            9876554

>KOG0267|consensus

Probab=99.72  E-value=4.5e-18  Score=170.97  Aligned_cols=162  Identities=25%  Similarity=0.361  Sum_probs=144.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|.++.|++...++ ++++.|+++     .+||+..++.+++|.||...+.++.|+|-|.++++|+.|+.+++||+....
T Consensus        72 pIeSl~f~~~E~Ll-aagsasgti-----K~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   72 PIESLTFDTSERLL-AAGSASGTI-----KVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             cceeeecCcchhhh-cccccCCce-----eeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            35677888777666 777777665     566666899999999999999999999999999999999999999999888


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      |.+.+.+|...|.++.|+|+|+++++|+.|.+++|||+..|+....|. |.+.|.++.|+|..-++++||.|+++++||+
T Consensus       146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  146 CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecc
Confidence            999999999999999999999999999999999999999999999997 9999999999999999999999999888888


Q ss_pred             CceEEeecC
Q psy9319         165 GNLKVFGFL  173 (432)
Q Consensus       165 ~~i~vwd~~  173 (432)
                      ..+.+.+-.
T Consensus       226 etfe~I~s~  234 (825)
T KOG0267|consen  226 ETFEVISSG  234 (825)
T ss_pred             ceeEEeecc
Confidence            776665443

>KOG0641|consensus

Probab=99.72  E-value=2.9e-16  Score=138.68  Aligned_cols=203  Identities=19%  Similarity=0.245  Sum_probs=147.3

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEE-EeecCcc-----ee----eEEEccCCcCEEEEEEcCCCCEEEEEeCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFK-FKEHHKL-----EE----QNILKAHPVTCICIEFDPTGKYFAVGSKD   73 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~-~~d~~~~-----~~----~~~l~~h~~~V~~l~~spdg~~L~sgs~d   73 (432)
                      ...|..++|+|.|.++ +.++...+.++.... +-++..+     ++    ...-+.|.+.|.|.+|||+|.+|++|+.|
T Consensus        32 sqairav~fhp~g~ly-avgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLY-AVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             hhheeeEEecCCCceE-EeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            3457889999999988 666766665544332 1122111     11    11224688999999999999999999999


Q ss_pred             CeEEEEeCCCC----------------------------------------------------eeEEEEeeCCCCEEEEE
Q psy9319          74 ALVSLWDAAEL----------------------------------------------------TCIRTFQRLDWPVRAIS  101 (432)
Q Consensus        74 g~I~iwd~~~~----------------------------------------------------~~~~~~~~h~~~V~~i~  101 (432)
                      .+|++..++..                                                    +..+.+.+|++-|.++ 
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence            99988754421                                                    1122334444444433 


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---c-----CCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecC
Q psy9319         102 FSHDGALIASGSEDLTIDIAHVESGKKVYDIC---I-----QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFL  173 (432)
Q Consensus       102 ~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~-----~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~  173 (432)
                      ++=+|-.+++|+.|.+|++||++-..++..+.   |     .+.|.+++..|.|++|++|..|..        ..+||++
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss--------c~lydir  261 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS--------CMLYDIR  261 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc--------eEEEEee
Confidence            12245678899999999999999999988874   2     345899999999999999999988        8889999


Q ss_pred             CCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         174 PEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       174 ~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      .|..++.+..|+..           ..-.|..|...+   +|+++-|..||+-|..-
T Consensus       262 g~r~iq~f~phsad-----------ir~vrfsp~a~y---llt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  262 GGRMIQRFHPHSAD-----------IRCVRFSPGAHY---LLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCceeeeeCCCccc-----------eeEEEeCCCceE---EEEecccceEEEeeccc
Confidence            99999998887532           122566677777   89999999999988764

>KOG1446|consensus

Probab=99.72  E-value=5.1e-16  Score=143.38  Aligned_cols=156  Identities=14%  Similarity=0.097  Sum_probs=132.8

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC--CCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK--DALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~--dg~I~iwd~   81 (432)
                      .+.|.++.|+++|..+++ |+.|-     .++++|..+++++.++..+.-.|..++|......++.++.  |.+|+..++
T Consensus        14 ~~~i~sl~fs~~G~~lit-ss~dD-----sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLIT-SSEDD-----SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             CCceeEEEecCCCCEEEE-ecCCC-----eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            356899999999998844 55554     3577788899999999998888999999877777777766  889999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      .+.+.+..|.||...|.+++.+|-+..+++++.|.+|++||++..+|...+...+. ..++|+|.|-++|++.....|.+
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKL  166 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEE
Confidence            99999999999999999999999889999999999999999999888877753333 34889999999999988879999


Q ss_pred             EeCCc
Q psy9319         162 QDCGN  166 (432)
Q Consensus       162 wd~~~  166 (432)
                      ||++.
T Consensus       167 yD~Rs  171 (311)
T KOG1446|consen  167 YDLRS  171 (311)
T ss_pred             EEecc
Confidence            98753

>KOG0313|consensus

Probab=99.71  E-value=8.1e-17  Score=151.53  Aligned_cols=193  Identities=21%  Similarity=0.318  Sum_probs=152.1

Q ss_pred             eeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------------
Q psy9319          20 QSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA-----------------   82 (432)
Q Consensus        20 ~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~-----------------   82 (432)
                      +++++.|.++..|.+..-+. ..+.+....||...|-+++..++|..+++||.|.+|.||+..                 
T Consensus       162 fvsas~Dqtl~Lw~~~~~~~-~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~  240 (423)
T KOG0313|consen  162 FVSASMDQTLRLWKWNVGEN-KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK  240 (423)
T ss_pred             EEEecCCceEEEEEecCchh-hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence            48889999888887764321 123344455999999999999999999999999999999932                 


Q ss_pred             --------CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE
Q psy9319          83 --------ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        83 --------~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s  154 (432)
                              ++.++.++.+|..+|.++.|++ ...++++|.|.+|+.||+.++.+...+.......++.++|...+|++|+
T Consensus       241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs  319 (423)
T KOG0313|consen  241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS  319 (423)
T ss_pred             hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence                    1346778899999999999998 6789999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCceEEeecCCC---ceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         155 DDKYDRKQDCGNLKVFGFLPE---PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       155 ~d~~I~vwd~~~i~vwd~~~~---~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      .|..        +++||.+++   .+.+++.||.-  |.-+++-         .|..  .+-+++++-|.++++||....
T Consensus       320 sdr~--------irl~DPR~~~gs~v~~s~~gH~n--wVssvkw---------sp~~--~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  320 SDRH--------IRLWDPRTGDGSVVSQSLIGHKN--WVSSVKW---------SPTN--EFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             CCCc--------eeecCCCCCCCceeEEeeecchh--hhhheec---------CCCC--ceEEEEEecCCeEEEEEeccC
Confidence            9999        555555433   34556777753  3333221         2332  344799999999999999876


Q ss_pred             HHHH
Q psy9319         232 KKTL  235 (432)
Q Consensus       232 ~~~l  235 (432)
                      ...|
T Consensus       379 k~pl  382 (423)
T KOG0313|consen  379 KAPL  382 (423)
T ss_pred             CCcc
Confidence            6444

>KOG0278|consensus

Probab=99.71  E-value=7.5e-17  Score=144.30  Aligned_cols=200  Identities=14%  Similarity=0.161  Sum_probs=166.6

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|..|+|+.+...+ .+++.+.-++++++.--    ..+...+.+|++.|..+.|+...+.|+|+++|++|++||..++.
T Consensus       102 ivk~~af~~ds~~l-ltgg~ekllrvfdln~p----~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt  176 (334)
T KOG0278|consen  102 IVKAVAFSQDSNYL-LTGGQEKLLRVFDLNRP----KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT  176 (334)
T ss_pred             eeeeEEecccchhh-hccchHHHhhhhhccCC----CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence            35789999988877 77777776666666532    23455678999999999999988899999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      .++++. ...+|+++.++++|.+|.++ ..+.|.+||..+-..+..+..+..|.+.+++|+..++++|+.|..       
T Consensus       177 ~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~-------  247 (334)
T KOG0278|consen  177 EVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK-------  247 (334)
T ss_pred             EEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE-------
Confidence            999887 66789999999999876554 556799999999999999989999999999999999999999998       


Q ss_pred             ceEEeecCCCceeeee-cCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         166 NLKVFGFLPEPIKKRK-RGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       166 ~i~vwd~~~~~~~~~~-~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                       ++.||..+|..+..+ .||           ....|-.|..|++..   .-+++.|.+||+|-...++..
T Consensus       248 -~~kfDy~TgeEi~~~nkgh-----------~gpVhcVrFSPdGE~---yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  248 -VYKFDYNTGEEIGSYNKGH-----------FGPVHCVRFSPDGEL---YASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             -EEEEeccCCceeeecccCC-----------CCceEEEEECCCCce---eeccCCCceEEEEEecCCCch
Confidence             888889988877764 444           346777888888776   778999999999977665443

>KOG0269|consensus

Probab=99.70  E-value=3.7e-17  Score=165.56  Aligned_cols=155  Identities=19%  Similarity=0.270  Sum_probs=132.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE-   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~-   83 (432)
                      .++++.|++..+.++++|+.|++++.||++.     .....++.+.+..|..+.|+| .+..|+++.+.|.+.+||++. 
T Consensus       135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp  209 (839)
T KOG0269|consen  135 SANKLDFHSTEPNILISGSQDGTVKCWDLRS-----KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP  209 (839)
T ss_pred             ceeeeeeccCCccEEEecCCCceEEEEeeec-----ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence            3688999999999999999999998888874     455666777889999999999 678999999999999999984 


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc--EEEEEecCCceEEEEEccCC-cEEEEEE--CCCe
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK--KVYDICIQAATFTVAWHPKQ-YLLAYAC--DDKY  158 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~--~~~~~~~~~~V~~l~fspdg-~~l~s~s--~d~~  158 (432)
                      ..+...+..|.++|.|+.|+|++.+||||+.|+.|+|||+.++.  ...++....+|.++.|-|.. .+|++++  .|..
T Consensus       210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts  289 (839)
T KOG0269|consen  210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS  289 (839)
T ss_pred             hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce
Confidence            45677888999999999999999999999999999999998764  35555678889999999976 4566664  5677


Q ss_pred             EEEEeCC
Q psy9319         159 DRKQDCG  165 (432)
Q Consensus       159 I~vwd~~  165 (432)
                      |+|||++
T Consensus       290 V~VWDvr  296 (839)
T KOG0269|consen  290 VHVWDVR  296 (839)
T ss_pred             EEEEeec
Confidence            9999985

>KOG1407|consensus

Probab=99.70  E-value=2.9e-16  Score=141.42  Aligned_cols=162  Identities=19%  Similarity=0.254  Sum_probs=129.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL-   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~-   84 (432)
                      .|-.+.|+|..+-++++++.|.+++.|+++     .+++...+....+.+ -+.|+|+|.+++.++.|..|.+.|.++. 
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r-----~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~  139 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIR-----SGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYK  139 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEec-----cCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccc
Confidence            455677888887777999988877666665     778888877655554 5789999999999999988877776531 


Q ss_pred             ----------------------------------------eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q psy9319          85 ----------------------------------------TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVE  124 (432)
Q Consensus        85 ----------------------------------------~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~  124 (432)
                                                              +++.+++.|.....||.|+|+|++||+|+.|-.+.+||+.
T Consensus       140 ~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~  219 (313)
T KOG1407|consen  140 IVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD  219 (313)
T ss_pred             eeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh
Confidence                                                    2345557788889999999999999999999999999999


Q ss_pred             CCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCc-eEEeecC
Q psy9319         125 SGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN-LKVFGFL  173 (432)
Q Consensus       125 ~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~-i~vwd~~  173 (432)
                      .--|+..+. +.-+|..+.|+.+|++||+||.|..|=|-++.+ -++|++.
T Consensus       220 ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  220 ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence            999999887 889999999999999999999999844443322 2344444

>KOG0308|consensus

Probab=99.70  E-value=7.2e-17  Score=160.75  Aligned_cols=171  Identities=14%  Similarity=0.170  Sum_probs=137.0

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCe-
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEF-DPTGKYFAVGSKDALVSLWDAAELT-   85 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~-spdg~~L~sgs~dg~I~iwd~~~~~-   85 (432)
                      +++.....+..+ ++||.|.++..|+....+   .-+..++..|..+|.|++. .++...+|||+-|+.|.+||++++. 
T Consensus        77 NDiiL~~~~~tl-IS~SsDtTVK~W~~~~~~---~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~  152 (735)
T KOG0308|consen   77 NDIILCGNGKTL-ISASSDTTVKVWNAHKDN---TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA  152 (735)
T ss_pred             hhHHhhcCCCce-EEecCCceEEEeecccCc---chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch
Confidence            344444455545 899999888777765321   2578889999999999999 7888999999999999999999773 


Q ss_pred             -eEEEE--------e-eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEE
Q psy9319          86 -CIRTF--------Q-RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        86 -~~~~~--------~-~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s  154 (432)
                       .++++        . ++..+|++++.++.|..|++|+..+.+++||.+++..+..+. |...|..+..++||..++++|
T Consensus       153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s  232 (735)
T KOG0308|consen  153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS  232 (735)
T ss_pred             hhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC
Confidence             23222        2 677899999999999999999999999999999998888776 999999999999999999999


Q ss_pred             CCCeEEEEeCCceEEeecCCCceeeeecCCCchhhh
Q psy9319         155 DDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWV  190 (432)
Q Consensus       155 ~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~  190 (432)
                      .||+        |++||+.-..|+.++..|.-++|.
T Consensus       233 SDgt--------IrlWdLgqQrCl~T~~vH~e~VWa  260 (735)
T KOG0308|consen  233 SDGT--------IRLWDLGQQRCLATYIVHKEGVWA  260 (735)
T ss_pred             CCce--------EEeeeccccceeeeEEeccCceEE
Confidence            9999        555555555566666666555544

>KOG0772|consensus

Probab=99.70  E-value=6.9e-17  Score=157.05  Aligned_cols=209  Identities=20%  Similarity=0.191  Sum_probs=149.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..|.++++.|.|..+ ++++-|-.+..|++.-.|... +..+.|. ..+..|.+++||+.|..|++.+.....+|+|-..
T Consensus       168 k~Vsal~~Dp~GaR~-~sGs~Dy~v~~wDf~gMdas~-~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG  245 (641)
T KOG0772|consen  168 KIVSALAVDPSGARF-VSGSLDYTVKFWDFQGMDASM-RSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG  245 (641)
T ss_pred             eEEEEeeecCCCcee-eeccccceEEEEecccccccc-hhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence            446889999999998 888888877777777555432 2233333 3456889999999999999999899999999875


Q ss_pred             CeeEEEE------------eeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCc-EEEEEe------cCCceEEEEE
Q psy9319          84 LTCIRTF------------QRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGK-KVYDIC------IQAATFTVAW  143 (432)
Q Consensus        84 ~~~~~~~------------~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~~-~~~~~~------~~~~V~~l~f  143 (432)
                      .......            .||...++|.+|+|+. ..++|++.||++++||+.... .+..+.      ..-++.+++|
T Consensus       246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~  325 (641)
T KOG0772|consen  246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW  325 (641)
T ss_pred             ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence            4433222            4788999999999954 578899999999999997653 333343      2235889999


Q ss_pred             ccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC----chhhhHHhhhcccccccccCccccccccceeccC
Q psy9319         144 HPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT----MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKK  219 (432)
Q Consensus       144 spdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~----mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~  219 (432)
                      +|+|.+||+|+.||.|.+|+.+...+   ..  ..+.-..|.    .+|+             ...+++..   +|+.+-
T Consensus       326 nrdg~~iAagc~DGSIQ~W~~~~~~v---~p--~~~vk~AH~~g~~Itsi-------------~FS~dg~~---LlSRg~  384 (641)
T KOG0772|consen  326 NRDGKLIAAGCLDGSIQIWDKGSRTV---RP--VMKVKDAHLPGQDITSI-------------SFSYDGNY---LLSRGF  384 (641)
T ss_pred             CCCcchhhhcccCCceeeeecCCccc---cc--ceEeeeccCCCCceeEE-------------Eeccccch---hhhccC
Confidence            99999999999999988887654222   11  111112222    2221             12345566   899999


Q ss_pred             cceeecccchhHHHHHH
Q psy9319         220 DYRVRADHFNKKKKTLQ  236 (432)
Q Consensus       220 D~~lR~~d~~~k~~~l~  236 (432)
                      |-++++||....++.|.
T Consensus       385 D~tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  385 DDTLKVWDLRQFKKPLN  401 (641)
T ss_pred             CCceeeeeccccccchh
Confidence            99999999988665543

>KOG0772|consensus

Probab=99.70  E-value=8.3e-17  Score=156.52  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=121.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-----cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-----AHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-----~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      +.|..|+|.....+.+|+.|++.++|++.-    ..++..++.     +..-+++.++|+|||.+||+|+.||+|.+|+.
T Consensus       271 lt~g~whP~~k~~FlT~s~DgtlRiWdv~~----~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~  346 (641)
T KOG0772|consen  271 LTCGCWHPDNKEEFLTCSYDGTLRIWDVNN----TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK  346 (641)
T ss_pred             eeccccccCcccceEEecCCCcEEEEecCC----chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence            478899999988889999999998888762    223344443     33457899999999999999999999999997


Q ss_pred             CCCee---EEEEeeCCC--CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-cEEEEEe---cCCceEEEEEccCCcEEEE
Q psy9319          82 AELTC---IRTFQRLDW--PVRAISFSHDGALIASGSEDLTIDIAHVESG-KKVYDIC---IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        82 ~~~~~---~~~~~~h~~--~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~-~~~~~~~---~~~~V~~l~fspdg~~l~s  152 (432)
                      .+...   ...-..|..  .|+||.||+||++|++-+.|+++++||++.. +++....   ...+-+.++|||+..+|++
T Consensus       347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T  426 (641)
T KOG0772|consen  347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT  426 (641)
T ss_pred             CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEe
Confidence            54322   223346776  8999999999999999999999999999875 4444432   4455678999999999999


Q ss_pred             EEC------CCeEEEEeCC
Q psy9319         153 ACD------DKYDRKQDCG  165 (432)
Q Consensus       153 ~s~------d~~I~vwd~~  165 (432)
                      |+.      .+.+.+||..
T Consensus       427 GtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  427 GTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             cccccCCCCCceEEEEecc
Confidence            864      3567787764

>KOG1273|consensus

Probab=99.69  E-value=7.3e-16  Score=142.09  Aligned_cols=152  Identities=16%  Similarity=0.164  Sum_probs=125.0

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      -.||.|++.|..+ +.|..|+.+-+|+     ..+...-..+.+|..+|+|++||+||+.|+++|.|..|.+||+..|.+
T Consensus        26 a~~~~Fs~~G~~l-AvGc~nG~vvI~D-----~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYL-AVGCANGRVVIYD-----FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEEeccCccee-eeeccCCcEEEEE-----ccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence            4789999999987 6666777665554     456677788999999999999999999999999999999999998877


Q ss_pred             EEEEeeCCCCEE-----------------------------------------------EEEEeeCCCEEEEEeCCCeEE
Q psy9319          87 IRTFQRLDWPVR-----------------------------------------------AISFSHDGALIASGSEDLTID  119 (432)
Q Consensus        87 ~~~~~~h~~~V~-----------------------------------------------~i~~spdg~~l~sgs~dg~V~  119 (432)
                      ++.+. ..++|+                                               +..|.+.|.++++|..-|.+.
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            66553 111111                                               122555688999999999999


Q ss_pred             EEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         120 IAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       120 vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      ++|..+.+++..+.  ....|..+.|+..|.+|+..+.|+.||.|++.
T Consensus       179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            99999999999887  33679999999999999999999999999864

>KOG0643|consensus

Probab=99.69  E-value=4.1e-16  Score=140.86  Aligned_cols=189  Identities=16%  Similarity=0.166  Sum_probs=146.6

Q ss_pred             EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        47 ~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                      .++||..+++.+.++.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|++.+-+...+++|+.|.++++||+.+|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46899999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecCCceEEEEEccCCcEEEEEECC-----CeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccc
Q psy9319         127 KKVYDICIQAATFTVAWHPKQYLLAYACDD-----KYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHR  201 (432)
Q Consensus       127 ~~~~~~~~~~~V~~l~fspdg~~l~s~s~d-----~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~  201 (432)
                      +++..+..+.+|..+.|+++|++++.+..+     +.|.++|++.-.- +..+..+...+..+. |          +...
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~-~~~s~ep~~kI~t~~-s----------kit~  152 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS-DIDSEEPYLKIPTPD-S----------KITS  152 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh-hhcccCceEEecCCc-c----------ceee
Confidence            999999999999999999999988877654     3344544432110 111222222222111 1          1122


Q ss_pred             cccCccccccccceeccCcceeecccchhHHHHHHHHHHHHhhhCCCcc
Q psy9319         202 ERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEF  250 (432)
Q Consensus       202 er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka~~~np~ef  250 (432)
                      ....|-+..   |+.++.|..|+.||....++..+.-++....+|.-.|
T Consensus       153 a~Wg~l~~~---ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~  198 (327)
T KOG0643|consen  153 ALWGPLGET---IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF  198 (327)
T ss_pred             eeecccCCE---EEEecCCCcEEEEEcccCceeeechhhhccccccccc
Confidence            222344445   8999999999999999887777766666666664443

>KOG0289|consensus

Probab=99.69  E-value=3.6e-16  Score=149.40  Aligned_cols=198  Identities=17%  Similarity=0.184  Sum_probs=159.6

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |..+...|..+.+ .++..|..     .-++|.+.++.+.++.||...|+.+.|+|+...+++++.|..|+||......+
T Consensus       222 i~ald~~~s~~~i-lTGG~d~~-----av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  222 ITALDIIPSSSKI-LTGGEDKT-----AVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             eeEEeecCCCCcc-eecCCCCc-----eEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            4455556654444 55555543     34567778899999999999999999999999999999999999999988888


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC---CceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ---AATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~---~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ......|..+|+.+..+|.|.||++++.|++..+.|+++|.++....+.   -.+++.+|||||.++.+|..|+.     
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~-----  370 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV-----  370 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-----
Confidence            8888899999999999999999999999999999999999998877653   34889999999999999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHH
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKK  232 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~  232 (432)
                         +++||+.++..+..|.||+...-...              -+.+.+-+.....|..+++||..+-+
T Consensus       371 ---vkiwdlks~~~~a~Fpght~~vk~i~--------------FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  371 ---VKIWDLKSQTNVAKFPGHTGPVKAIS--------------FSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             ---EEEEEcCCccccccCCCCCCceeEEE--------------eccCceEEEEEecCCeEEEEEehhhc
Confidence               88888888888888888753211111              11233346777788889999987744

>KOG1036|consensus

Probab=99.68  E-value=2.2e-15  Score=138.64  Aligned_cols=216  Identities=18%  Similarity=0.047  Sum_probs=153.9

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+.|..+.|+|..+.++++ +||++.+.+++.     ... +...-.|..++.+++|.+ ...+++|+-||.|+.+|+.+
T Consensus        13 ~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~-----~~~-l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVS-SWDGSLRLYDVP-----ANS-LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             hhceeeEEEcCcCCcEEEE-eccCcEEEEecc-----chh-hhhheecCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence            4668999999998888555 599887555553     332 223335789999999987 45788999999999999998


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      +... .+-.|..+|.|+.+++-...+++||.|++|++||.+...+...+.....|.++..+  |..|++|+.+..+.+||
T Consensus        85 ~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   85 GNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYD  161 (323)
T ss_pred             Ccce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEE
Confidence            7654 45569999999999997788999999999999999986666666666788888765  78899999999999999


Q ss_pred             CCceEEee------------------cCCCceeeeecCCC----------chhhhHHhhhcccccccccC------c---
Q psy9319         164 CGNLKVFG------------------FLPEPIKKRKRGGT----------MSSWVKAAKVNQKTHRERHQ------P---  206 (432)
Q Consensus       164 ~~~i~vwd------------------~~~~~~~~~~~g~~----------mss~~~a~~~~~~~h~er~q------p---  206 (432)
                      ++++...-                  -..|-.+.++.|..          +++-..+.    ++|+....      |   
T Consensus       162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF----kCHr~~~~~~~~~yPVNa  237 (323)
T KOG1036|consen  162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF----KCHRLSEKDTEIIYPVNA  237 (323)
T ss_pred             cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE----EeeecccCCceEEEEece
Confidence            97644322                  11122222222221          11222222    34444332      2   


Q ss_pred             --cccccccceeccCcceeecccchhHHHH
Q psy9319         207 --EDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       207 --~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                        -++.+..+.++..|..+-.||...++..
T Consensus       238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             eEeccccceEEecCCCceEEEccCcchhhh
Confidence              2233445789999999999999885544

>KOG0283|consensus

Probab=99.68  E-value=1.8e-16  Score=162.47  Aligned_cols=125  Identities=20%  Similarity=0.254  Sum_probs=108.7

Q ss_pred             eeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------------------------------------
Q psy9319          44 EQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE---------------------------------------   83 (432)
Q Consensus        44 ~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~---------------------------------------   83 (432)
                      ..+.+. +|.+.|+++.||+||+|||+|+.|+.|+||.+..                                       
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344556 8999999999999999999999999999996533                                       


Q ss_pred             ---------------------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEE
Q psy9319          84 ---------------------LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA  142 (432)
Q Consensus        84 ---------------------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~  142 (432)
                                           .++++.|.||.+.|.+++||.+ .+|+++|.|.+|++|++....|+..|.|..-|+|++
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa  416 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA  416 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence                                 0123455789999999999976 489999999999999999999999999999999999


Q ss_pred             Ecc-CCcEEEEEECCCeEEEEeCCceEE
Q psy9319         143 WHP-KQYLLAYACDDKYDRKQDCGNLKV  169 (432)
Q Consensus       143 fsp-dg~~l~s~s~d~~I~vwd~~~i~v  169 (432)
                      |+| |.+++++|+-|+.||||++..-+|
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~V  444 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKV  444 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCee
Confidence            999 779999999999999999865333

>KOG0305|consensus

Probab=99.68  E-value=3.1e-16  Score=156.65  Aligned_cols=155  Identities=19%  Similarity=0.230  Sum_probs=130.3

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA-HPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      .+.|.++.|+|+|..| +.+..++     .+.+||..+.+.+..+.+ |...|.|++|+  +..+.+|+.|+.|..+|++
T Consensus       217 ~~~vtSv~ws~~G~~L-avG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHL-AVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             CCceEEEEECCCCCEE-EEeecCC-----eEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence            4678999999999988 5555454     556677778888999998 99999999998  6789999999999999999


Q ss_pred             CCeeEEE-EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEcc-CCcEEEEEE--CCC
Q psy9319          83 ELTCIRT-FQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHP-KQYLLAYAC--DDK  157 (432)
Q Consensus        83 ~~~~~~~-~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fsp-dg~~l~s~s--~d~  157 (432)
                      ....... +.+|...|..+.|++|+.++|+|+.|+.+.|||..+..++..+. |.+.|.+++|+| ...+||+|+  .|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            8766555 88999999999999999999999999999999997777776665 999999999999 457888874  678


Q ss_pred             eEEEEeCCc
Q psy9319         158 YDRKQDCGN  166 (432)
Q Consensus       158 ~I~vwd~~~  166 (432)
                      +|++||...
T Consensus       369 ~i~fwn~~~  377 (484)
T KOG0305|consen  369 CIKFWNTNT  377 (484)
T ss_pred             EEEEEEcCC
Confidence            855555543

>KOG0300|consensus

Probab=99.68  E-value=6.4e-17  Score=149.00  Aligned_cols=203  Identities=16%  Similarity=0.159  Sum_probs=157.7

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC----
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA----   82 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~----   82 (432)
                      |..++....-+ ++.++|.|.+..+|     .+.++.|+..+.||.+.|+|+.|++.+.+++++|.|++-.||...    
T Consensus       151 iW~Vaa~~tqp-i~gtASADhTA~iW-----s~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~  224 (481)
T KOG0300|consen  151 IWHVAADSTQP-ICGTASADHTARIW-----SLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE  224 (481)
T ss_pred             eeeehhhcCCc-ceeecccccceeEE-----eeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence            33344433333 45777888776554     556999999999999999999999999999999999999999510    


Q ss_pred             --C----------------------------------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          83 --E----------------------------------LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        83 --~----------------------------------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                        .                                  ..++..+.+|.+.|.+..|-..|..++++|.|.+-.+||+++|
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence              0                                  1246778899999999999999999999999999999999999


Q ss_pred             cEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCC-ceeeeecCCCchhhhHHhhhccccccccc
Q psy9319         127 KKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE-PIKKRKRGGTMSSWVKAAKVNQKTHRERH  204 (432)
Q Consensus       127 ~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~-~~~~~~~g~~mss~~~a~~~~~~~h~er~  204 (432)
                      ..+..+. |....+.++-+|..+++++++.|.+        +++||++.. ..+..|.||.-+.-....           
T Consensus       305 e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT--------FRLWDFReaI~sV~VFQGHtdtVTS~vF-----------  365 (481)
T KOG0300|consen  305 EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT--------FRLWDFREAIQSVAVFQGHTDTVTSVVF-----------  365 (481)
T ss_pred             ceeccccCcchhccccccCCcceEEEEeccCce--------eEeccchhhcceeeeecccccceeEEEE-----------
Confidence            9999886 8899999999999999999999999        777777632 235567777633211111           


Q ss_pred             CccccccccceeccCcceeecccchhHHHHHHHH
Q psy9319         205 QPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQIL  238 (432)
Q Consensus       205 qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L  238 (432)
                          .....+++++.|.++.+||.......|..+
T Consensus       366 ----~~dd~vVSgSDDrTvKvWdLrNMRsplATI  395 (481)
T KOG0300|consen  366 ----NTDDRVVSGSDDRTVKVWDLRNMRSPLATI  395 (481)
T ss_pred             ----ecCCceeecCCCceEEEeeeccccCcceee
Confidence                112347899999999999987765554444

>KOG0301|consensus

Probab=99.67  E-value=5.5e-16  Score=155.53  Aligned_cols=192  Identities=18%  Similarity=0.175  Sum_probs=147.1

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      -++....++.  ++++|||.+.+.|.+       +++..++.+|+.+|+++++-|++ .+++||.|.+|++|.-  +.++
T Consensus       105 C~ls~~~~~~--~iSgSWD~TakvW~~-------~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l  172 (745)
T KOG0301|consen  105 CSLSIGEDGT--LISGSWDSTAKVWRI-------GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLL  172 (745)
T ss_pred             eeeecCCcCc--eEecccccceEEecc-------hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchh
Confidence            3444444444  489999999887765       47788899999999999999987 8899999999999986  6789


Q ss_pred             EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319          88 RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus        88 ~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      .+|.+|+..|+.+++-|++. +++|+.||.|++|++ +|.++..+ .|..-|++++..+++..+++++.|++++||+.. 
T Consensus       173 ~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-  249 (745)
T KOG0301|consen  173 KTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-  249 (745)
T ss_pred             hhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-
Confidence            99999999999999998754 789999999999999 67776666 489999999988888999999999996665543 


Q ss_pred             eEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccch----hHHHHHHHH
Q psy9319         167 LKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN----KKKKTLQIL  238 (432)
Q Consensus       167 i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~----~k~~~l~~L  238 (432)
                               .+.+.+.-...|.|...+-               ....+..+..|..+|+|.-.    ..++.++.+
T Consensus       250 ---------e~~q~I~lPttsiWsa~~L---------------~NgDIvvg~SDG~VrVfT~~k~R~As~evl~af  301 (745)
T KOG0301|consen  250 ---------ECVQVITLPTTSIWSAKVL---------------LNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAF  301 (745)
T ss_pred             ---------ceEEEEecCccceEEEEEe---------------eCCCEEEeccCceEEEEEecccccCCHHHHHHH
Confidence                     4444444444444442221               11227788889999988666    344555544

>KOG0302|consensus

Probab=99.67  E-value=9.8e-16  Score=144.20  Aligned_cols=149  Identities=23%  Similarity=0.258  Sum_probs=119.1

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE--   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~--   83 (432)
                      .|..++|||....++++||.|+++++|+++..  ....++.+ +.|.+.|+.+.|+..-.+|++|++||++.|||++.  
T Consensus       259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~--~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG--PKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             chhhhccCCccCceEEeeecCceEEEEEecCC--CccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence            46789999999989999999999999988832  11133433 89999999999999888999999999999999974  


Q ss_pred             -CeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCc-----------------EEEEEec--CCceEEEE
Q psy9319          84 -LTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGK-----------------KVYDICI--QAATFTVA  142 (432)
Q Consensus        84 -~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~-----------------~~~~~~~--~~~V~~l~  142 (432)
                       ++++.+|.-|..+|+++.|+| +...|++++.|..|.+||+..-.                 +...|-|  ...|..+.
T Consensus       336 ~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kevh  415 (440)
T KOG0302|consen  336 SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVH  415 (440)
T ss_pred             CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhhe
Confidence             677899999999999999999 56788889999999999984211                 0111223  34588899


Q ss_pred             EccCC-cEEEEEECCC
Q psy9319         143 WHPKQ-YLLAYACDDK  157 (432)
Q Consensus       143 fspdg-~~l~s~s~d~  157 (432)
                      |++.- -++++.+.||
T Consensus       416 WH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  416 WHRQIPGLLVSTAIDG  431 (440)
T ss_pred             eccCCCCeEEEecccc
Confidence            99854 4677778888

>KOG1273|consensus

Probab=99.67  E-value=5.1e-16  Score=143.12  Aligned_cols=92  Identities=24%  Similarity=0.511  Sum_probs=87.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec
Q psy9319          55 CICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI  134 (432)
Q Consensus        55 V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~  134 (432)
                      ..|+.|++.|.+||+|+.||.|.|||+.+......+.+|..+|.+++||+||+.|+|+|.|..|.+||+..|.++..+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            78999999999999999999999999999988889999999999999999999999999999999999999999999988


Q ss_pred             CCceEEEEEccC
Q psy9319         135 QAATFTVAWHPK  146 (432)
Q Consensus       135 ~~~V~~l~fspd  146 (432)
                      .++|+.+.|+|.
T Consensus       106 ~spv~~~q~hp~  117 (405)
T KOG1273|consen  106 DSPVWGAQWHPR  117 (405)
T ss_pred             cCccceeeeccc
Confidence            888888888874

>KOG0268|consensus

Probab=99.65  E-value=4.7e-16  Score=145.69  Aligned_cols=179  Identities=12%  Similarity=0.100  Sum_probs=135.5

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      |.+||..-..++..+.-....|.++.|+| ....|++|+.|++|.|||++.+.++..+. ....-+.|+|+|.+-.+++|
T Consensus       169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a  247 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAA  247 (433)
T ss_pred             eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeec
Confidence            66788777788888888888999999999 45778888899999999999998877665 33456789999988889999


Q ss_pred             eCCCeEEEEeCCCCc-EEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhh
Q psy9319         113 SEDLTIDIAHVESGK-KVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWV  190 (432)
Q Consensus       113 s~dg~V~vwd~~~~~-~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~  190 (432)
                      +.|..++.+|++.-. ++.... |.+.|.++.|||.|.-+++||.|.+|+||.        ...+..-..+....|.   
T Consensus       248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~--------~~~~~SRdiYhtkRMq---  316 (433)
T KOG0268|consen  248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFP--------VNHGHSRDIYHTKRMQ---  316 (433)
T ss_pred             cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEee--------cCCCcchhhhhHhhhh---
Confidence            999999999998753 444443 888999999999999999999999955554        4433222222222222   


Q ss_pred             HHhhhcccccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       191 ~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                             ...-....-++.+   +++++.|..+|+|..+..++.
T Consensus       317 -------~V~~Vk~S~Dsky---i~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  317 -------HVFCVKYSMDSKY---IISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             -------eeeEEEEeccccE---EEecCCCcceeeeecchhhhc
Confidence                   2222333345566   899999999999988876554

>KOG1332|consensus

Probab=99.65  E-value=1.4e-15  Score=135.83  Aligned_cols=203  Identities=15%  Similarity=0.121  Sum_probs=148.6

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .|.+...+--+..+ ++|+.|++++++.+.-  ....+++..|.||.+||..++|..  -|.+||+++.||.|.||.-.+
T Consensus        13 ~IHda~lDyygkrl-ATcsSD~tVkIf~v~~--n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   13 MIHDAQLDYYGKRL-ATCSSDGTVKIFEVRN--NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             hhhHhhhhhhccee-eeecCCccEEEEEEcC--CCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence            45566666666666 9999999998888762  111267889999999999999965  799999999999999999887


Q ss_pred             Cee--EEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCC--cEEEEE--ecCCceEEEEEccC---C-----
Q psy9319          84 LTC--IRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESG--KKVYDI--CIQAATFTVAWHPK---Q-----  147 (432)
Q Consensus        84 ~~~--~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~--~~~~~~--~~~~~V~~l~fspd---g-----  147 (432)
                      |.-  .+.+..|...|++++|.|.  |-.|+++|.||.|.|.+.++.  -....+  .|.-.|.+++|.|.   |     
T Consensus        90 g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~  169 (299)
T KOG1332|consen   90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQ  169 (299)
T ss_pred             CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccccc
Confidence            643  4566789999999999994  568899999999999988754  222222  48889999999995   4     


Q ss_pred             ------cEEEEEECCCeEEEEeCCceEEeecCCCce--eeeecCCCchhhhHHhhhcccccccccCccccccccceeccC
Q psy9319         148 ------YLLAYACDDKYDRKQDCGNLKVFGFLPEPI--KKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKK  219 (432)
Q Consensus       148 ------~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~--~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~  219 (432)
                            +.|++|+.|..        +++|+...+.-  -+.+.+|+--.-+         -.|-+. .+-....+.+.+.
T Consensus       170 ~~~~~~krlvSgGcDn~--------VkiW~~~~~~w~~e~~l~~H~dwVRD---------VAwaP~-~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  170 GPAAKVKRLVSGGCDNL--------VKIWKFDSDSWKLERTLEGHKDWVRD---------VAWAPS-VGLPKSTIASCSQ  231 (299)
T ss_pred             CcccccceeeccCCccc--------eeeeecCCcchhhhhhhhhcchhhhh---------hhhccc-cCCCceeeEEecC
Confidence                  56999999999        66776665421  2235555432211         112211 1123345788899


Q ss_pred             cceeecccch
Q psy9319         220 DYRVRADHFN  229 (432)
Q Consensus       220 D~~lR~~d~~  229 (432)
                      |..+-+|...
T Consensus       232 Dg~viIwt~~  241 (299)
T KOG1332|consen  232 DGTVIIWTKD  241 (299)
T ss_pred             CCcEEEEEec
Confidence            9999998666

>KOG0294|consensus

Probab=99.64  E-value=2.7e-15  Score=138.37  Aligned_cols=120  Identities=20%  Similarity=0.205  Sum_probs=111.1

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCC--EEEEEeCCCeEEE
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA--LIASGSEDLTIDI  120 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~--~l~sgs~dg~V~v  120 (432)
                      .+...+..|.+++++++.+  |.++++||.|.+|+|||+.....+..+..|.+.|+++.|.+...  .|++|+.||.|.+
T Consensus        34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            4566788999999999986  79999999999999999999888889999999999999999665  8999999999999


Q ss_pred             EeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         121 AHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       121 wd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      |+..+..++..+. |.+.|+.++.+|.|++-++.+.|+.++.||+
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence            9999999999887 8889999999999999999999999999987

>KOG4283|consensus

Probab=99.64  E-value=4.1e-15  Score=136.07  Aligned_cols=222  Identities=19%  Similarity=0.219  Sum_probs=162.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEee--cCcc---eeeE-----EEccCCcCEEEEEEcC-CCCEEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKE--HHKL---EEQN-----ILKAHPVTCICIEFDP-TGKYFAVGSKD   73 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d--~~~~---~~~~-----~l~~h~~~V~~l~~sp-dg~~L~sgs~d   73 (432)
                      ..|+.+.+.|....+..++..|+++..|++.--+  ...+   +.+.     .-.+|.-.|.++.|-| |..++.++|-|
T Consensus        44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD  123 (397)
T KOG4283|consen   44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD  123 (397)
T ss_pred             CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence            4578888888888888999999999888886322  0111   1111     1246888999999999 77789999999


Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeC---CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCC-c
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHD---GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQ-Y  148 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spd---g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg-~  148 (432)
                      .++++||.++.+....|. .++.|++-+|||-   ..++|+|..|-.|++.|+.+|.+...+. |.+.|.++.|+|.. -
T Consensus       124 htlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~  202 (397)
T KOG4283|consen  124 HTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW  202 (397)
T ss_pred             ceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence            999999999988877776 7788999999993   4578888899999999999999999987 99999999999976 4


Q ss_pred             EEEEEECCCeEEEEeCCc----eEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceee
Q psy9319         149 LLAYACDDKYDRKQDCGN----LKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVR  224 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~----i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR  224 (432)
                      .|++|+.||.|++||++.    +.+.|...+.....+....        ....+....-....+++   ++.+..|-.+|
T Consensus       203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~--------ah~gkvngla~tSd~~~---l~~~gtd~r~r  271 (397)
T KOG4283|consen  203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT--------AHYGKVNGLAWTSDARY---LASCGTDDRIR  271 (397)
T ss_pred             EEEecCCCceEEEEEeecccceeEEeecccCccCccccccc--------cccceeeeeeecccchh---hhhccCccceE
Confidence            678899999988888854    4555655432222111000        00001111111123334   67888999999


Q ss_pred             cccchhHHHHHHHH
Q psy9319         225 ADHFNKKKKTLQIL  238 (432)
Q Consensus       225 ~~d~~~k~~~l~~L  238 (432)
                      +|+....+..++..
T Consensus       272 ~wn~~~G~ntl~~~  285 (397)
T KOG4283|consen  272 VWNMESGRNTLREF  285 (397)
T ss_pred             EeecccCccccccc
Confidence            99998888776544

>KOG0639|consensus

Probab=99.63  E-value=4.9e-16  Score=150.67  Aligned_cols=157  Identities=18%  Similarity=0.238  Sum_probs=128.9

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      -.|+|..|.+.|++..+++.+ ...++.+|++..   .+......+..-.-...+++.|||.+.+++++.||.|.|||+.
T Consensus       464 rdnyiRSckL~pdgrtLivGG-eastlsiWDLAa---pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGG-EASTLSIWDLAA---PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             cccceeeeEecCCCceEEecc-ccceeeeeeccC---CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence            468999999999999885554 344454554431   2222233344434557788999999999999999999999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      +...+..|.+|...+.||.+++||..|.||+-|++|+.||++.+..+......+.|.++.++|++.+|++|..++.+.|-
T Consensus       540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevl  619 (705)
T KOG0639|consen  540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVL  619 (705)
T ss_pred             cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEE
Confidence            99999999999999999999999999999999999999999999888877788889999999999999999988874443


Q ss_pred             e
Q psy9319         163 D  163 (432)
Q Consensus       163 d  163 (432)
                      .
T Consensus       620 h  620 (705)
T KOG0639|consen  620 H  620 (705)
T ss_pred             e
Confidence            3

>KOG0300|consensus

Probab=99.62  E-value=6.2e-15  Score=135.99  Aligned_cols=201  Identities=18%  Similarity=0.179  Sum_probs=155.2

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL-   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~-   84 (432)
                      .|.++.|-..+..+ +++|||++.+.|     |+.++..+..|.||....+.++-+|..++++++|.|.+.++||++.. 
T Consensus       274 vV~a~dWL~gg~Q~-vTaSWDRTAnlw-----DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  274 VVSACDWLAGGQQM-VTASWDRTANLW-----DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             ceEehhhhcCccee-eeeeccccceee-----eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc
Confidence            35777888777776 899999987555     55699999999999999999999999999999999999999999843 


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-cEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG-KKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~-~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ..+..|.+|...|+++.|..+. .+++||+|.+|++||+++. .++.++...+++..++.+..+.+|+.-..+..|++||
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence            3478899999999999999865 4889999999999999875 5788899999999999998888999888888877777


Q ss_pred             CCceEEeecCCCceeeeecCCC-chhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGT-MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~-mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ++-.++=.+.-.    .-.||. |-+          +..|...+   ...++++..-|..+-.|..+.
T Consensus       427 lnG~RlaRlPrt----sRqgHrRMV~----------c~AW~eeh---p~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  427 LNGNRLARLPRT----SRQGHRRMVT----------CCAWLEEH---PACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             cCCCccccCCcc----cccccceeee----------eeeccccC---cccccccccccceeeeeEecc
Confidence            665555433310    112332 211          01122221   225688888898888887654

>KOG4283|consensus

Probab=99.62  E-value=4e-15  Score=136.14  Aligned_cols=151  Identities=21%  Similarity=0.156  Sum_probs=121.0

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT---GKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~sgs~dg~I~iwd~~~   83 (432)
                      |..+.|-|.+.-++.++|+|.++     .+||..+.+....++- .+.|++-++||-   ..++|+|..|-.|++.|+.+
T Consensus       104 iss~~WyP~DtGmFtssSFDhtl-----KVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen  104 ISSAIWYPIDTGMFTSSSFDHTL-----KVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             eeeeEEeeecCceeecccccceE-----EEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            45666777766677888888866     5556667777777754 577889999993   45778888889999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCCC-cEEEEE---------------ecCCceEEEEEccC
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVESG-KKVYDI---------------CIQAATFTVAWHPK  146 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~~-~~~~~~---------------~~~~~V~~l~fspd  146 (432)
                      |.+.+++.+|.+.|.++.|||... .|++|+.||.|++||++.. .|...+               .|.+.|..++|+.+
T Consensus       178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd  257 (397)
T KOG4283|consen  178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD  257 (397)
T ss_pred             CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence            999999999999999999999665 5789999999999999743 233222               36778999999999


Q ss_pred             CcEEEEEECCCeEEEEe
Q psy9319         147 QYLLAYACDDKYDRKQD  163 (432)
Q Consensus       147 g~~l~s~s~d~~I~vwd  163 (432)
                      |.++++++.|..+++|+
T Consensus       258 ~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  258 ARYLASCGTDDRIRVWN  274 (397)
T ss_pred             chhhhhccCccceEEee
Confidence            99999999999944444

>KOG1063|consensus

Probab=99.62  E-value=8.5e-15  Score=147.04  Aligned_cols=158  Identities=18%  Similarity=0.194  Sum_probs=133.2

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      -|.+++.+|+++++ +++........-.|.+|+..+...++.|.+|+-.|+.++|||||++|++.|.|.++.+|......
T Consensus       527 Ev~~l~~s~~gnli-ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~  605 (764)
T KOG1063|consen  527 EVYALAISPTGNLI-ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI  605 (764)
T ss_pred             eEEEEEecCCCCEE-eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence            47999999999987 66667777788889999999999999999999999999999999999999999999999864321


Q ss_pred             ----eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC--cEEEE---EecCCceEEEEEccC-----CcEEE
Q psy9319          86 ----CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG--KKVYD---ICIQAATFTVAWHPK-----QYLLA  151 (432)
Q Consensus        86 ----~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~--~~~~~---~~~~~~V~~l~fspd-----g~~l~  151 (432)
                          .......|+.-|++++|+|++.+++|+|.|.+|.+|.....  ..+..   +.+...|+.++|.|-     +..++
T Consensus       606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~va  685 (764)
T KOG1063|consen  606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVA  685 (764)
T ss_pred             chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEE
Confidence                12235689999999999999999999999999999998877  44433   357888999999872     34778


Q ss_pred             EEECCCeEEEEeC
Q psy9319         152 YACDDKYDRKQDC  164 (432)
Q Consensus       152 s~s~d~~I~vwd~  164 (432)
                      .|-..|.|.+|..
T Consensus       686 vGle~GeI~l~~~  698 (764)
T KOG1063|consen  686 VGLEKGEIVLWRR  698 (764)
T ss_pred             EEecccEEEEEec
Confidence            8889999777764

>KOG1274|consensus

Probab=99.62  E-value=1.2e-14  Score=150.19  Aligned_cols=153  Identities=16%  Similarity=0.268  Sum_probs=131.1

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      +.+++++.+|..+ ++++.|-.+     .+-+..+......+.+|.++|.++.|+|.+.+||+.+.||.|++||+.++.+
T Consensus        99 ~r~~~v~g~g~~i-aagsdD~~v-----K~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen   99 IRDLAVSGSGKMI-AAGSDDTAV-----KLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             ceEEEEecCCcEE-EeecCceeE-----EEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence            5788899888877 777777655     4455567788899999999999999999999999999999999999999888


Q ss_pred             EEEEeeC--------CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEEC
Q psy9319          87 IRTFQRL--------DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        87 ~~~~~~h--------~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ..++.+-        ...+..++|+|+|..|+..+.|++|.+|+..++.....+.   +.+.+..+.|+|.|.+||+++.
T Consensus       173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~  252 (933)
T KOG1274|consen  173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL  252 (933)
T ss_pred             hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence            7666532        3457789999998899999999999999999998888775   4445889999999999999999


Q ss_pred             CCeEEEEeCC
Q psy9319         156 DKYDRKQDCG  165 (432)
Q Consensus       156 d~~I~vwd~~  165 (432)
                      +|.|.|||..
T Consensus       253 ~g~I~vWnv~  262 (933)
T KOG1274|consen  253 DGQILVWNVD  262 (933)
T ss_pred             CCcEEEEecc
Confidence            9998888876

>KOG0299|consensus

Probab=99.61  E-value=3.3e-15  Score=143.81  Aligned_cols=207  Identities=15%  Similarity=0.160  Sum_probs=155.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++++|++.++ +++..|.     .+.+|+..+++.++++.+|.+.|.+++|-....-|++++.|.+|++|++...
T Consensus       203 keil~~avS~Dgkyl-atgg~d~-----~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  203 KEILTLAVSSDGKYL-ATGGRDR-----HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             ceeEEEEEcCCCcEE-EecCCCc-----eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            346889999999987 6665554     4577888899999999999999999999988889999999999999999988


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ..+.++.+|...|.++....-++.+..|+.|+++++|++.....+.-..+.+.+.|++|-. ..++++||.+|.      
T Consensus       277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~------  349 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGS------  349 (479)
T ss_pred             HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCce------
Confidence            8899999999999999988888888888899999999995555444445788899999975 467899999999      


Q ss_pred             CceEEeecCCCceeeeec-CCCch---------hhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         165 GNLKVFGFLPEPIKKRKR-GGTMS---------SWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       165 ~~i~vwd~~~~~~~~~~~-g~~ms---------s~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                        |.+|++....++.+.. .|-..         +|..++-.         .|....   +.+++.+..+|+|-....-..
T Consensus       350 --IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~---------i~~sdL---~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  350 --IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV---------IPGSDL---LASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             --EEEeeecccCceeEeeccccccCCccccccccceeeeEe---------cccCce---EEecCCCCceEEEEecCCccc
Confidence              5555555444444322 11111         12211111         122222   577888999999977765444


Q ss_pred             HHHH
Q psy9319         235 LQIL  238 (432)
Q Consensus       235 l~~L  238 (432)
                      +..|
T Consensus       416 i~~l  419 (479)
T KOG0299|consen  416 INLL  419 (479)
T ss_pred             ccee
Confidence            4333

>KOG0278|consensus

Probab=99.61  E-value=1.4e-14  Score=129.88  Aligned_cols=150  Identities=17%  Similarity=0.236  Sum_probs=121.2

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |..+.|.-....++++ +.|+++     ++||..++..+++|.. ..+|+++.++++|.+|.++ ..++|.+||..+...
T Consensus       146 Ir~v~wc~eD~~iLSS-add~tV-----RLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSS-ADDKTV-----RLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL  217 (334)
T ss_pred             ceeEEEeccCceEEee-ccCCce-----EEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccc
Confidence            4445555445555344 666655     5566669999999876 4679999999999877655 466899999998887


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE--ecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI--CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~--~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +..+. ....|.+.+++|+...+++|+.|..++.||..+|..+..+  .|.++|.|+.|+|+|...++||.||+|++|..
T Consensus       218 lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  218 LKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             eeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            77665 5567999999999899999999999999999999998886  49999999999999999999999999666554


Q ss_pred             C
Q psy9319         165 G  165 (432)
Q Consensus       165 ~  165 (432)
                      .
T Consensus       297 ~  297 (334)
T KOG0278|consen  297 T  297 (334)
T ss_pred             c
Confidence            3

>KOG0303|consensus

Probab=99.61  E-value=3.8e-15  Score=140.96  Aligned_cols=120  Identities=20%  Similarity=0.314  Sum_probs=107.1

Q ss_pred             EEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------eeEEEEeeCCCCEEEEEEeeC-CCEEEEEeCCCe
Q psy9319          47 ILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAEL-------TCIRTFQRLDWPVRAISFSHD-GALIASGSEDLT  117 (432)
Q Consensus        47 ~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~i~~spd-g~~l~sgs~dg~  117 (432)
                      .+.||+++|..++|+| +...|||||.|.+|.||.+..+       .++..+.+|...|..++|+|. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4578999999999999 6788999999999999998632       457788999999999999994 568899999999


Q ss_pred             EEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         118 IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       118 V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      |.+|++.+|..+..+.|+.-|++++|+.||.+|++++.|..|||||.+.
T Consensus       156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            9999999999999999999999999999999999999999966666543

>KOG1446|consensus

Probab=99.61  E-value=4.3e-14  Score=130.70  Aligned_cols=167  Identities=19%  Similarity=0.261  Sum_probs=131.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +-|..+..+|-+..+ .+++.|.+++.|+++     ..+++..+..-..+  .++|+|+|-++|+|.....|++||++..
T Consensus       101 ~~V~sL~~sP~~d~F-lS~S~D~tvrLWDlR-----~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  101 KRVNSLSVSPKDDTF-LSSSLDKTVRLWDLR-----VKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             ceEEEEEecCCCCeE-EecccCCeEEeeEec-----CCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            457889999999877 788889888777776     34555555443333  5789999999999998889999999853


Q ss_pred             --eeEEEEe---eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCc---eEEEEEccCCcEEEEEEC
Q psy9319          85 --TCIRTFQ---RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAA---TFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        85 --~~~~~~~---~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~---V~~l~fspdg~~l~s~s~  155 (432)
                        .+..+|.   +.....+.+.|||||++|+.+...+.+.+.|.-+|..+..+. +...   ....+|+|||.++++|+.
T Consensus       173 dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  173 DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence              3334443   335678999999999999999999999999999999888875 2221   257899999999999999


Q ss_pred             CCeEEEEeCCceEEeecCCCceeeeecCCCch
Q psy9319         156 DKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMS  187 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~ms  187 (432)
                      ||+        |.+|++.+|..+..+.|..++
T Consensus       253 dg~--------i~vw~~~tg~~v~~~~~~~~~  276 (311)
T KOG1446|consen  253 DGT--------IHVWNLETGKKVAVLRGPNGG  276 (311)
T ss_pred             CCc--------EEEEEcCCCcEeeEecCCCCC
Confidence            999        777888888888777775443

>KOG0288|consensus

Probab=99.60  E-value=3.5e-15  Score=141.94  Aligned_cols=196  Identities=16%  Similarity=0.192  Sum_probs=154.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|..++|.+++..+ ++++.|..     .++|+....+...+|.||++.|+++.|......+++|+.|.+|++||+....
T Consensus       221 ~it~~d~d~~~~~~-iAas~d~~-----~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~  294 (459)
T KOG0288|consen  221 NITSIDFDSDNKHV-IAASNDKN-----LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY  294 (459)
T ss_pred             CcceeeecCCCceE-EeecCCCc-----eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence            47889999988877 45555554     4566666889999999999999999998876669999999999999999988


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      |..++.. ...+..|..+  +..+++|-.|+.|++||.+++.+....+..+.|.++..+++|..|.+++.|.+       
T Consensus       295 C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt-------  364 (459)
T KOG0288|consen  295 CSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT-------  364 (459)
T ss_pred             eeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc-------
Confidence            8777653 3455666655  45688888999999999999999999998889999999999999999999999       


Q ss_pred             ceEEeecCCCceeeeecCCC---chhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         166 NLKVFGFLPEPIKKRKRGGT---MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       166 ~i~vwd~~~~~~~~~~~g~~---mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                       +.+.|+++..+...+...-   .|.|..++.          .|++.+   ++.++.|..+-+|+....
T Consensus       365 -l~viDlRt~eI~~~~sA~g~k~asDwtrvvf----------Spd~~Y---vaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  365 -LKVIDLRTKEIRQTFSAEGFKCASDWTRVVF----------SPDGSY---VAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             -eeeeecccccEEEEeeccccccccccceeEE----------CCCCce---eeeccCCCcEEEEEccCc
Confidence             5555555555544443221   233443333          488888   899999999999987653

>KOG0646|consensus

Probab=99.59  E-value=3e-14  Score=137.49  Aligned_cols=167  Identities=14%  Similarity=0.127  Sum_probs=136.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEe-e---cCcceeeEEEccCCcCEEEEEEcCCC--CEEEEEeCCCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFK-E---HHKLEEQNILKAHPVTCICIEFDPTG--KYFAVGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~-d---~~~~~~~~~l~~h~~~V~~l~~spdg--~~L~sgs~dg~I~i   78 (432)
                      -.|.|+.|+.++..+ ++++.|+.+..|.+... +   ..+-++.+.+.+|+-+|+++...+.|  ..|+++|.|.++++
T Consensus       124 Q~ITcL~fs~dgs~i-iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~  202 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHI-ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKL  202 (476)
T ss_pred             cceeEEEEeCCCcEE-EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence            357899999999987 89999999999998642 1   12457889999999999999987753  68999999999999


Q ss_pred             EeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc----------------EEEEE-ecCC--ceE
Q psy9319          79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK----------------KVYDI-CIQA--ATF  139 (432)
Q Consensus        79 wd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~----------------~~~~~-~~~~--~V~  139 (432)
                      ||+..|..+.++. ....+.+++.+|-++.++.|+.+|.|.+.++....                .+..+ +|.+  .|+
T Consensus       203 wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  203 WDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             EEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence            9999999888776 66789999999999999999999999998875322                12222 3555  899


Q ss_pred             EEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         140 TVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       140 ~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      |++++-||..|++|+.||.        +.+||+.+.++++++
T Consensus       282 cLais~DgtlLlSGd~dg~--------VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGK--------VCVWDIYSKQCIRTL  315 (476)
T ss_pred             EEEEecCccEEEeeCCCCC--------EEEEecchHHHHHHH
Confidence            9999999999999999999        666666666655543

>KOG0268|consensus

Probab=99.59  E-value=2.4e-15  Score=140.96  Aligned_cols=157  Identities=19%  Similarity=0.209  Sum_probs=127.4

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      |.+.|.++.|+|....++++|..|+++-.+|.+     .+.++..+.- .-.-+.++|+|.+-.+++|+.|..++.||++
T Consensus       186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R-----~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  186 GADSISSVKFNPVETSILASCASDRSIVLYDLR-----QASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             CCCceeEEecCCCcchheeeeccCCceEEEecc-----cCCccceeee-eccccceecCccccceeeccccccceehhhh
Confidence            567789999999998888999889877555544     5555543322 1233578999988889999999999999998


Q ss_pred             CC-eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE--ecCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          83 EL-TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI--CIQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        83 ~~-~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~--~~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .. .++..+.+|.+.|.+++|||.|+-+++||.|.+|+||....+..-..+  .--..|.++.||.|..++++||.|+. 
T Consensus       260 ~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n-  338 (433)
T KOG0268|consen  260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN-  338 (433)
T ss_pred             hhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc-
Confidence            53 457788899999999999999999999999999999999877654433  24567999999999999999999999 


Q ss_pred             EEEeCCceEEeecC
Q psy9319         160 RKQDCGNLKVFGFL  173 (432)
Q Consensus       160 ~vwd~~~i~vwd~~  173 (432)
                             |++|...
T Consensus       339 -------vRlWka~  345 (433)
T KOG0268|consen  339 -------VRLWKAK  345 (433)
T ss_pred             -------eeeeecc
Confidence                   6666543

>KOG4328|consensus

Probab=99.59  E-value=9.1e-15  Score=140.74  Aligned_cols=172  Identities=13%  Similarity=0.097  Sum_probs=127.9

Q ss_pred             CcccccccCCCCc-ceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPS-LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~-~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~   82 (432)
                      ..|++++|+|..+ .++++|..-+.+..|++.. ......-+..+..|+++|.++.|+| +...+++.|.||+|++-|+.
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~-~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~  265 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGT-QEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE  265 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCC-CCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence            4579999999987 5656665445444444420 1122344677889999999999999 66889999999999999886


Q ss_pred             CCee---------------------------------EEE------------EeeCCCCEEEEEEee-CCCEEEEEeCCC
Q psy9319          83 ELTC---------------------------------IRT------------FQRLDWPVRAISFSH-DGALIASGSEDL  116 (432)
Q Consensus        83 ~~~~---------------------------------~~~------------~~~h~~~V~~i~~sp-dg~~l~sgs~dg  116 (432)
                      .+..                                 ...            +.-|...|.+++++| ...+|+|+|.|+
T Consensus       266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~  345 (498)
T KOG4328|consen  266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ  345 (498)
T ss_pred             chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence            4210                                 000            112455799999999 566899999999


Q ss_pred             eEEEEeCCCCc-----EEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCce
Q psy9319         117 TIDIAHVESGK-----KVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       117 ~V~vwd~~~~~-----~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      +++|||++.-.     .+..+.|...|.++.|||+|-.|+|.+.|..|+|||...+.-|+...+.+
T Consensus       346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            99999998532     25566799999999999988779999999999999886666666555443

>KOG0301|consensus

Probab=99.58  E-value=2.6e-14  Score=143.63  Aligned_cols=146  Identities=17%  Similarity=0.114  Sum_probs=125.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|.++..-|.. .+ +++|.|.+++.|.       .++.+.++.||+..|..+++-|++ .|+|++.||.|++|++ +|.
T Consensus       142 sVWAv~~l~e~-~~-vTgsaDKtIklWk-------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge  210 (745)
T KOG0301|consen  142 SVWAVASLPEN-TY-VTGSADKTIKLWK-------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGE  210 (745)
T ss_pred             heeeeeecCCC-cE-EeccCcceeeecc-------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCc
Confidence            35677777777 34 8888998776554       468999999999999999998875 4789999999999999 688


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCC-ceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQA-ATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~-~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ++..+.+|++.|++++..+++..+++++.|+++++|+..  .+.+.+.++. .|+++.+-++|. +++|+.||.||||..
T Consensus       211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence            999999999999999988888899999999999999975  8889998777 799999988887 566888999877765


Q ss_pred             C
Q psy9319         165 G  165 (432)
Q Consensus       165 ~  165 (432)
                      .
T Consensus       288 ~  288 (745)
T KOG0301|consen  288 D  288 (745)
T ss_pred             c
Confidence            4

>KOG1539|consensus

Probab=99.58  E-value=5.1e-14  Score=144.08  Aligned_cols=154  Identities=15%  Similarity=0.153  Sum_probs=128.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE---ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL---KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l---~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ..+.+++.++.|+..++. +     ..+.|.+++..+|-....+   ..|.++|+.++...-++.+++++.+|.+.+||.
T Consensus       449 ~~~~av~vs~CGNF~~IG-~-----S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f  522 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIG-Y-----SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF  522 (910)
T ss_pred             cceEEEEEeccCceEEEe-c-----cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence            445778888888765443 2     3345677777788888888   589999999999988899999999999999998


Q ss_pred             CCCee-----------------------------------------EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEE
Q psy9319          82 AELTC-----------------------------------------IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI  120 (432)
Q Consensus        82 ~~~~~-----------------------------------------~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~v  120 (432)
                      .....                                         +..|.+|.+.|++++|||||++|++++.|++|++
T Consensus       523 ~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  523 KKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             CCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence            75321                                         1223579999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC-CeEEEEeC
Q psy9319         121 AHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD-KYDRKQDC  164 (432)
Q Consensus       121 wd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d-~~I~vwd~  164 (432)
                      ||+.++.++-.+....++.++.|+|+|.+|||+..| ..|++|.-
T Consensus       603 wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  603 WDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            999999999999999999999999999999999988 45666643

>KOG0303|consensus

Probab=99.57  E-value=1.7e-14  Score=136.68  Aligned_cols=159  Identities=15%  Similarity=0.142  Sum_probs=129.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEe--ecCcceeeEEEccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFK--EHHKLEEQNILKAHPVTCICIEFDPT-GKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~--d~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~   82 (432)
                      .|..++|+|.....++|||.|.++.+|.|---  ....-+++..|.||...|.-++|+|. .+.|+|++.|.+|.+||+.
T Consensus        83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~  162 (472)
T KOG0303|consen   83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG  162 (472)
T ss_pred             cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence            35778999999888899999999888887521  11122567889999999999999994 5788999999999999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCc-eEEEEEccCCcEEEEEE---CCC
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAA-TFTVAWHPKQYLLAYAC---DDK  157 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~-V~~l~fspdg~~l~s~s---~d~  157 (432)
                      +|..+.++. |...|++++|+.||.+|++++.|..|+|||.++++.+..-. |.+. -..+.|-.+|.++.||.   .+.
T Consensus       163 tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seR  241 (472)
T KOG0303|consen  163 TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSER  241 (472)
T ss_pred             CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccc
Confidence            999988887 99999999999999999999999999999999999988763 4443 55677888888555553   344


Q ss_pred             eEEEEeCC
Q psy9319         158 YDRKQDCG  165 (432)
Q Consensus       158 ~I~vwd~~  165 (432)
                      .+-+||..
T Consensus       242 q~aLwdp~  249 (472)
T KOG0303|consen  242 QIALWDPN  249 (472)
T ss_pred             ceeccCcc
Confidence            55566553

>KOG0647|consensus

Probab=99.57  E-value=2.2e-14  Score=131.77  Aligned_cols=116  Identities=24%  Similarity=0.308  Sum_probs=99.4

Q ss_pred             cCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CeeE-EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          50 AHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE-LTCI-RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        50 ~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                      .....|.+++||| ...++++||.|++|++|++.. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3567899999999 567777999999999999975 3332 344568999999999999999999999999999999999


Q ss_pred             cEEEEEecCCceEEEEEccCCc--EEEEEECCCeEEEEeCC
Q psy9319         127 KKVYDICIQAATFTVAWHPKQY--LLAYACDDKYDRKQDCG  165 (432)
Q Consensus       127 ~~~~~~~~~~~V~~l~fspdg~--~l~s~s~d~~I~vwd~~  165 (432)
                      +....-.|.++|.++.|-+...  .|+|||.|.+|++||.+
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R  145 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR  145 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence            7776667999999999988665  89999999997777765

>KOG0642|consensus

Probab=99.57  E-value=1.6e-14  Score=142.26  Aligned_cols=209  Identities=17%  Similarity=0.159  Sum_probs=156.2

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEE---eecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKF---KEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~---~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ..||..++|+|..+.+ ++|+.|+.+..|.+.-   -.....+++.++.+|.++|.|++.++++..+++|+-||+|+.|+
T Consensus       294 ~d~ir~l~~~~sep~l-it~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVL-ITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             hhhhhhhhcCCCCCeE-EEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            4788999999988877 8999999999998832   11223467899999999999999999999999999999999995


Q ss_pred             CCC----------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE---------------------
Q psy9319          81 AAE----------LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV---------------------  129 (432)
Q Consensus        81 ~~~----------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~---------------------  129 (432)
                      +..          ......+.||++.|+.+++|+....|++++.||+|+.|+.....+.                     
T Consensus       373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~  452 (577)
T KOG0642|consen  373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP  452 (577)
T ss_pred             cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence            531          1235678899999999999998888999999999999987543320                     


Q ss_pred             -----------------------EEEe--------cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCcee
Q psy9319         130 -----------------------YDIC--------IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIK  178 (432)
Q Consensus       130 -----------------------~~~~--------~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~  178 (432)
                                             ..+.        ....+..+.++|++.+.+++..|+.        |+++|..+|.++
T Consensus       453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~--------Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS--------IRFFDNKTGKIL  524 (577)
T ss_pred             HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc--------eecccccccccc
Confidence                                   0000        0012445677777777787888877        777777777777


Q ss_pred             eeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHHH
Q psy9319         179 KRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTL  235 (432)
Q Consensus       179 ~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l  235 (432)
                      .....|..+.-..++.           |.+.+   ++.++.|..+|+|....|...+
T Consensus       525 ~s~~a~~~svtslai~-----------~ng~~---l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLAID-----------PNGPY---LMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             hheeeccceecceeec-----------CCCce---EEeecCCceeehhhccchheee
Confidence            7666665444333332           33334   8999999999999776655543

>KOG0270|consensus

Probab=99.57  E-value=2.2e-14  Score=137.74  Aligned_cols=195  Identities=16%  Similarity=0.140  Sum_probs=143.4

Q ss_pred             cceeeeeeecCCCceeEEEEeecCccee----------------eEEEccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q psy9319          17 SLYQSSVLTDISPKQLDFKFKEHHKLEE----------------QNILKAHPVTCICIEFDPT-GKYFAVGSKDALVSLW   79 (432)
Q Consensus        17 ~~l~~s~s~D~~~~~~~i~~~d~~~~~~----------------~~~l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iw   79 (432)
                      ..+++.|..|..+.+|++-+-|......                -..-.+|+..|.+++|+.. .+.|||||.|.+|.+|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            3466888999999999988765432111                0112379999999999884 4689999999999999


Q ss_pred             eCCCCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC-cEEEEEecCCceEEEEEccCC-cEEEEEECC
Q psy9319          80 DAAELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG-KKVYDICIQAATFTVAWHPKQ-YLLAYACDD  156 (432)
Q Consensus        80 d~~~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~-~~~~~~~~~~~V~~l~fspdg-~~l~s~s~d  156 (432)
                      |+.+|++..++..|...|.++.|+| .+.+|++||.|++|.+.|++.. ..-..+...+.|..++|+|.. ..++++..|
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd  351 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD  351 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence            9999999999999999999999999 6789999999999999999853 333445678899999999976 456667788


Q ss_pred             CeEEEEeCCceEEeecCCCceeeeecCCC--chhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHH
Q psy9319         157 KYDRKQDCGNLKVFGFLPEPIKKRKRGGT--MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKK  233 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~~~~~~~g~~--mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~  233 (432)
                      |+++-+|++..       |.++.++..|.  .|++......               ..-+.+.+.|.++.+|++.-...
T Consensus       352 G~v~~~D~R~~-------~~~vwt~~AHd~~ISgl~~n~~~---------------p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  352 GTVYYFDIRNP-------GKPVWTLKAHDDEISGLSVNIQT---------------PGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             ceEEeeecCCC-------CCceeEEEeccCCcceEEecCCC---------------CcceeeccccceEEEEeecCCCC
Confidence            99555555432       35555555554  3333221111               11145578899999998875444

>KOG0270|consensus

Probab=99.57  E-value=4.9e-14  Score=135.34  Aligned_cols=154  Identities=18%  Similarity=0.161  Sum_probs=126.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      |-++.|+-.-..+++|+|.|.++     .+||+.++++..++..|++.|.++.|+| .+.+|++||.|++|.+.|.+...
T Consensus       246 vl~Ls~n~~~~nVLaSgsaD~TV-----~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~  320 (463)
T KOG0270|consen  246 VLALSWNRNFRNVLASGSADKTV-----KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS  320 (463)
T ss_pred             HHHHHhccccceeEEecCCCceE-----EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence            45777887777788999999876     5566679999999999999999999999 67899999999999999998433


Q ss_pred             eEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCC-cEEEEEECCCeEEE
Q psy9319          86 CIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQ-YLLAYACDDKYDRK  161 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg-~~l~s~s~d~~I~v  161 (432)
                      +....-...+.|-.++|.| ....++++..||+|+-+|+++. +++.++. |.++|.++++++.- .++++++.|+.   
T Consensus       321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~---  397 (463)
T KOG0270|consen  321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV---  397 (463)
T ss_pred             ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce---
Confidence            3222223567899999999 4456777889999999999975 8888887 99999999998754 67889999999   


Q ss_pred             EeCCceEEeecC
Q psy9319         162 QDCGNLKVFGFL  173 (432)
Q Consensus       162 wd~~~i~vwd~~  173 (432)
                           +++|++.
T Consensus       398 -----Vklw~~~  404 (463)
T KOG0270|consen  398 -----VKLWKFD  404 (463)
T ss_pred             -----EEEEeec
Confidence                 6666655

>KOG0288|consensus

Probab=99.56  E-value=3.4e-14  Score=135.23  Aligned_cols=190  Identities=18%  Similarity=0.156  Sum_probs=143.0

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |.++.|..+... +++++.|.+++.|++.     ...|..++-. ...+..++.+  +..++||..|+.|++||+.++.+
T Consensus       264 Vt~ak~~~~~~~-vVsgs~DRtiK~WDl~-----k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~  334 (459)
T KOG0288|consen  264 VTAAKFKLSHSR-VVSGSADRTIKLWDLQ-----KAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK  334 (459)
T ss_pred             eeeehhhccccc-eeeccccchhhhhhhh-----hhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCce
Confidence            455666655555 5899999999888776     4555554432 2334555554  56789999999999999999999


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-----IQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-----~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      ......+. .|+++..+++|..+.+++.|.++.+.|+++......+.     ..+.++.+.|||++.|+++||.||.   
T Consensus       335 ~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs---  410 (459)
T KOG0288|consen  335 TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS---  410 (459)
T ss_pred             eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc---
Confidence            88887664 99999999999999999999999999999988777764     3345888999999999999999999   


Q ss_pred             EeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecc
Q psy9319         162 QDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRAD  226 (432)
Q Consensus       162 wd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~  226 (432)
                           +++|++.+|++.+.+......+   ++..      ....|.+   .|+|...++...++|
T Consensus       411 -----v~iW~v~tgKlE~~l~~s~s~~---aI~s------~~W~~sG---~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  411 -----VYIWSVFTGKLEKVLSLSTSNA---AITS------LSWNPSG---SGLLSADKQKAVTLW  458 (459)
T ss_pred             -----EEEEEccCceEEEEeccCCCCc---ceEE------EEEcCCC---chhhcccCCcceEec
Confidence                 8888888888877665443221   1100      1112333   448888888888888

>KOG0299|consensus

Probab=99.56  E-value=9.2e-15  Score=140.79  Aligned_cols=204  Identities=17%  Similarity=0.204  Sum_probs=153.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEe-------ecC-----cceeeEEE-ccCCcCEEEEEEcCCCCEEEEEeC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFK-------EHH-----KLEEQNIL-KAHPVTCICIEFDPTGKYFAVGSK   72 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~-------d~~-----~~~~~~~l-~~h~~~V~~l~~spdg~~L~sgs~   72 (432)
                      .|.++.++|++... .+++.|+++-.|++...       ...     .+.+...- ++|...+.+++.||||++|++|+.
T Consensus       144 s~~~vals~d~~~~-fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~  222 (479)
T KOG0299|consen  144 SVTSVALSPDDKRV-FSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR  222 (479)
T ss_pred             cceEEEeeccccce-eecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence            35788899998876 78888888877776532       110     01111111 378899999999999999999999


Q ss_pred             CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-ecCCceEEEEEccCCcEEE
Q psy9319          73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLA  151 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~~~~~V~~l~fspdg~~l~  151 (432)
                      |..|.|||..+...+..+.+|.+.|.+++|-....-++++|.|++|++|++.....+.++ .|+..|..+.-..-++.+-
T Consensus       223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vt  302 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVT  302 (479)
T ss_pred             CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEE
Confidence            999999999999999999999999999999988888999999999999999877666655 5999999998887788888


Q ss_pred             EEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         152 YACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       152 s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      +|+.|++        +++|++.. ...-.+.|+ -+|+..+.-.              ....+++++.+..|-+|+.-+|
T Consensus       303 VGgrDrT--------~rlwKi~e-esqlifrg~-~~sidcv~~I--------------n~~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  303 VGGRDRT--------VRLWKIPE-ESQLIFRGG-EGSIDCVAFI--------------NDEHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             eccccce--------eEEEeccc-cceeeeeCC-CCCeeeEEEe--------------cccceeeccCCceEEEeeeccc
Confidence            8889999        55555532 222223333 2233322211              1223788999999999988776


Q ss_pred             HHH
Q psy9319         232 KKT  234 (432)
Q Consensus       232 ~~~  234 (432)
                      +..
T Consensus       359 kpl  361 (479)
T KOG0299|consen  359 KPL  361 (479)
T ss_pred             Cce
Confidence            554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=3.8e-13  Score=121.87  Aligned_cols=164  Identities=23%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             ccccCCCCcceeeeeee--cCCC--ceeEEEEeec-CcceeeEEEcc-CCcCEEEEEEcCCCCEEEEE--eCCCeEEEEe
Q psy9319           9 LLGLNPRPSLYQSSVLT--DISP--KQLDFKFKEH-HKLEEQNILKA-HPVTCICIEFDPTGKYFAVG--SKDALVSLWD   80 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~--D~~~--~~~~i~~~d~-~~~~~~~~l~~-h~~~V~~l~~spdg~~L~sg--s~dg~I~iwd   80 (432)
                      .+.|+|+|..+++....  |.+-  ..+...++-. .....+..+.- ..++|.+++|+|+|..|+..  ..+..|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            46799999888666552  2221  1222333322 12234444433 34679999999999887554  4567999999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          81 AAELTCIRTFQRLDWPVRAISFSHDGALIASGSE---DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~---dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      +. +..+..+.  ...+..+.|||+|++|++|+.   .|.|.+||+.+.+.+....+.. +..++|+|+|+++++++...
T Consensus        90 ~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   90 VK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             Cc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEecc
Confidence            97 66666663  567889999999999999874   3679999999888888776554 67999999999999988643


Q ss_pred             eEEEEeCCceEEeecCCCceee
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~  179 (432)
                      ..++-  +.+++|++. |..+.
T Consensus       166 r~~~d--ng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  166 RLRVD--NGFKIWSFQ-GRLLY  184 (194)
T ss_pred             ceecc--ccEEEEEec-CeEeE
Confidence            32211  237788875 44443

>KOG2096|consensus

Probab=99.54  E-value=8.4e-14  Score=128.76  Aligned_cols=163  Identities=19%  Similarity=0.228  Sum_probs=116.0

Q ss_pred             eEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------------------------------------eEE
Q psy9319          45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT------------------------------------CIR   88 (432)
Q Consensus        45 ~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~------------------------------------~~~   88 (432)
                      +.+|++|.+.|++++||.||++|++++.|++|+||++....                                    .+.
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            34678999999999999999999999999999999886310                                    011


Q ss_pred             EEe-----------------------eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEc
Q psy9319          89 TFQ-----------------------RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWH  144 (432)
Q Consensus        89 ~~~-----------------------~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fs  144 (432)
                      .+.                       .|.-.+.++-....+.+|++++.|..|++|++. |+.+..+. ....-+..+.|
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            110                       112234444444567899999999999999998 88888886 55556778999


Q ss_pred             cCCcEEEEEECCCeEEEEeCCceEEeecC---CCc-----eeeeecCCCchhhhHHhhhcccccccccCcccccccccee
Q psy9319         145 PKQYLLAYACDDKYDRKQDCGNLKVFGFL---PEP-----IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLE  216 (432)
Q Consensus       145 pdg~~l~s~s~d~~I~vwd~~~i~vwd~~---~~~-----~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe  216 (432)
                      |+|+++++++-.-.        +++|.+-   .|.     .+..+.||.....           ..-..|.++.   +++
T Consensus       238 P~GRFia~~gFTpD--------VkVwE~~f~kdG~fqev~rvf~LkGH~saV~-----------~~aFsn~S~r---~vt  295 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPD--------VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL-----------AAAFSNSSTR---AVT  295 (420)
T ss_pred             CCCcEEEEecCCCC--------ceEEEEEeccCcchhhhhhhheeccchhhee-----------eeeeCCCcce---eEE
Confidence            99999999988777        5555432   221     2334556543222           2223355555   889


Q ss_pred             ccCcceeecccchh
Q psy9319         217 KKKDYRVRADHFNK  230 (432)
Q Consensus       217 ~~~D~~lR~~d~~~  230 (432)
                      .++|..+|+||.+-
T Consensus       296 vSkDG~wriwdtdV  309 (420)
T KOG2096|consen  296 VSKDGKWRIWDTDV  309 (420)
T ss_pred             EecCCcEEEeeccc
Confidence            99999999998663

>KOG2445|consensus

Probab=99.54  E-value=3.3e-13  Score=124.37  Aligned_cols=118  Identities=18%  Similarity=0.180  Sum_probs=98.9

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd~   81 (432)
                      .+.|.++.|++-|..+ ++|+.|.++.+|+.. -+..+..+......|.+.|..+.|.+  -|+.+|++|.|+++.||.-
T Consensus        13 ~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~-~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   13 KDLIHDVSFDFYGRRM-ATCSSDQTVKIWDST-SDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             cceeeeeeecccCcee-eeccCCCcEEEEecc-CCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            4568999999999988 999999999988873 34556677888899999999999965  5899999999999999964


Q ss_pred             C---------CCeeEEEEeeCCCCEEEEEEee--CCCEEEEEeCCCeEEEEeC
Q psy9319          82 A---------ELTCIRTFQRLDWPVRAISFSH--DGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        82 ~---------~~~~~~~~~~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd~  123 (432)
                      .         ......++....+.|+++.|.|  -|-.||+++.||.|+||+.
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence            2         1233566777788999999999  5778999999999999875

>KOG1009|consensus

Probab=99.54  E-value=4.2e-14  Score=134.45  Aligned_cols=160  Identities=17%  Similarity=0.202  Sum_probs=135.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcc----eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL----EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~----~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      .+..+.|.++....+++|..|..+++|-+..-....+    ..+.+|..|...|+++.|+|+|.+|+||+++|.|.+|-.
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~   94 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQ   94 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEe
Confidence            3556677777764669999999999999886544432    346678899999999999999999999999999999965


Q ss_pred             C--------C--------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEc
Q psy9319          82 A--------E--------LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWH  144 (432)
Q Consensus        82 ~--------~--------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fs  144 (432)
                      .        +        ......+.+|...|..++|+|++.++++++.|.++++||+..|..+..+. |..-|..++|+
T Consensus        95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawD  174 (434)
T KOG1009|consen   95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWD  174 (434)
T ss_pred             cCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecc
Confidence            5        2        23345667899999999999999999999999999999999999998886 88889999999


Q ss_pred             cCCcEEEEEECCCeEEEEeCC
Q psy9319         145 PKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       145 pdg~~l~s~s~d~~I~vwd~~  165 (432)
                      |-+.++++-+.|...+++.+.
T Consensus       175 pl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  175 PLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             hhhhhhhhhccCcccceeeee
Confidence            999999999999876666553

>KOG2048|consensus

Probab=99.53  E-value=4.3e-13  Score=134.70  Aligned_cols=205  Identities=10%  Similarity=0.071  Sum_probs=147.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC-cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP-VTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..|.+++++-+.+.+ +.+-.|+.+.+|++.    .+.-+...+.++. +.|.+++|++.+ .|+|.+.+|+|.-||+.+
T Consensus        26 s~I~slA~s~kS~~l-AvsRt~g~IEiwN~~----~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQL-AVSRTDGNIEIWNLS----NNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             cceEEEEEeccCCce-eeeccCCcEEEEccC----CCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEeccc
Confidence            456788888877776 555566666666654    2345666777765 679999999654 677888899999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      ++....+....+.|++++.+|.+..++.||.||.+..++...+.......   ..+.|.+++|+|++..+++|+.||.  
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~--  177 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV--  177 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce--
Confidence            99999999899999999999999999999999988888887776655442   5678999999999999999999999  


Q ss_pred             EEeCCceEEeecCCCceeeeecCCCchhhh-HHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         161 KQDCGNLKVFGFLPEPIKKRKRGGTMSSWV-KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       161 vwd~~~i~vwd~~~~~~~~~~~g~~mss~~-~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                            |++||..++..+....-..|.--. ..+..|.....        ....+..+..-..+..||....
T Consensus       178 ------Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--------rd~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  178 ------IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--------RDSTIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             ------EEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--------ecCcEEEecCCceEEEEcccCc
Confidence                  555555555544422222221111 11111111111        1123677777889999988764

>KOG1445|consensus

Probab=99.53  E-value=2e-14  Score=142.87  Aligned_cols=154  Identities=19%  Similarity=0.238  Sum_probs=127.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecC--cceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH--KLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~--~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~   81 (432)
                      ..|.++.|+|.+..-++.+..|+.+++|.+..-+..  ...+...|.+|...|+++.|+| -...|++++.|.+|.+||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            347899999998887788889999988888754432  3456778999999999999999 5678999999999999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE-EEEEe--cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK-VYDIC--IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~-~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .++.....+.+|++.|.+++|||||+.+++.+.||+|++|..+++.. +..-.  ....--.+.|..+|+++++.+-|..
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            99999999999999999999999999999999999999999988753 32221  1222346889999999888877654

>KOG2096|consensus

Probab=99.53  E-value=7.7e-14  Score=129.00  Aligned_cols=159  Identities=18%  Similarity=0.199  Sum_probs=121.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeec-------------------------------CcceeeEEEc----
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH-------------------------------HKLEEQNILK----   49 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~-------------------------------~~~~~~~~l~----   49 (432)
                      ..|.+++|+.+|..+ ++++.|+++++|++.-+..                               ..|..++.+.    
T Consensus        87 ~~vt~~~FsSdGK~l-at~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~  165 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKL-ATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK  165 (420)
T ss_pred             CceeeeEEcCCCcee-EEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence            457899999999987 9999999999998762211                               1111112111    


Q ss_pred             -------------------cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEE
Q psy9319          50 -------------------AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA  110 (432)
Q Consensus        50 -------------------~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~  110 (432)
                                         -|.-.+..+-....+.+|++++.|..|.||++. |+.+..+......-+..+.||+|++++
T Consensus       166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia  244 (420)
T KOG2096|consen  166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIA  244 (420)
T ss_pred             ccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEE
Confidence                               122334444444566789999999999999998 888888887777788899999999999


Q ss_pred             EEeCCCeEEEEeCC---CCc-----EEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         111 SGSEDLTIDIAHVE---SGK-----KVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       111 sgs~dg~V~vwd~~---~~~-----~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +++...-|++|.+-   .|.     .+..+ +|.+.|..++|+|+...+++.|.||.+++||+.
T Consensus       245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            99998899999863   232     12233 389999999999999999999999998888875

>KOG0639|consensus

Probab=99.52  E-value=2.3e-14  Score=139.20  Aligned_cols=157  Identities=15%  Similarity=0.203  Sum_probs=131.0

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      .+++++|+..+. .+|..|+.     |.+||+.+...++.|+||+..+.||.+++||..|-+|+-|.+|+.||++.+..+
T Consensus       513 yALa~spDakvc-FsccsdGn-----I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  513 YALAISPDAKVC-FSCCSDGN-----IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             hhhhcCCcccee-eeeccCCc-----EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence            678999999877 55655654     455666688899999999999999999999999999999999999999988765


Q ss_pred             EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCce
Q psy9319          88 RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNL  167 (432)
Q Consensus        88 ~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i  167 (432)
                      .... ..+.|.++..+|.+.+++.|-.++.|.|......+.-....|.+.|.++.|.+.|+++++.+.|+.        +
T Consensus       587 qqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl--------L  657 (705)
T KOG0639|consen  587 QQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL--------L  657 (705)
T ss_pred             hhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh--------h
Confidence            4432 457899999999999999999999999988755544444448899999999999999999999998        7


Q ss_pred             EEeecCCCceee
Q psy9319         168 KVFGFLPEPIKK  179 (432)
Q Consensus       168 ~vwd~~~~~~~~  179 (432)
                      ..|.+.-|..+.
T Consensus       658 nawrtPyGasiF  669 (705)
T KOG0639|consen  658 NAWRTPYGASIF  669 (705)
T ss_pred             hhccCcccccee
Confidence            778777665544

>KOG1274|consensus

Probab=99.51  E-value=3.3e-13  Score=139.64  Aligned_cols=202  Identities=20%  Similarity=0.238  Sum_probs=153.6

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEe------------------------------------ecCcceeeEEEccC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFK------------------------------------EHHKLEEQNILKAH   51 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~------------------------------------d~~~~~~~~~l~~h   51 (432)
                      ..+.|.|+|.. +++|..|+.++.|+...-                                    ...++..-..|.-.
T Consensus        17 t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf   95 (933)
T KOG1274|consen   17 TLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARF   95 (933)
T ss_pred             EEEEEcCCCCE-EEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeee
Confidence            56778888884 488888888877765422                                    00011111111223


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD  131 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~  131 (432)
                      +-++.+++|+.+|.+++.||.|-.|++.++........+.+|.++|.++.|+|.+.+||+.+.||.|.+||+.++.+...
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             Ee---------cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhccccccc
Q psy9319         132 IC---------IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRE  202 (432)
Q Consensus       132 ~~---------~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~e  202 (432)
                      +.         ....+..++|+|+|..++..+.|+.        |++|+..+......+.+...+|-- ..        .
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~--------Vkvy~r~~we~~f~Lr~~~~ss~~-~~--------~  238 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT--------VKVYSRKGWELQFKLRDKLSSSKF-SD--------L  238 (933)
T ss_pred             cccCCccccccccceeeeeeecCCCCeEEeeccCCe--------EEEEccCCceeheeecccccccce-EE--------E
Confidence            53         1334667999999888888888998        777777777777777666555531 11        1


Q ss_pred             ccCccccccccceeccCcceeecccchh
Q psy9319         203 RHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       203 r~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ...|.+.+   |-....|..|-+||...
T Consensus       239 ~wsPnG~Y---iAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  239 QWSPNGKY---IAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEcCCCcE---EeeeccCCcEEEEeccc
Confidence            22466666   77778899999999876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.50  E-value=3.2e-12  Score=122.43  Aligned_cols=163  Identities=13%  Similarity=0.101  Sum_probs=117.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-SKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s~dg~I~iwd~~~~   84 (432)
                      .+..+.++|++..++ +++.+..    .+.+|+..++.....+... ..+.+++|+|+|.+|+++ ..++.|.+||+.++
T Consensus       116 ~~~~~~~~~dg~~l~-~~~~~~~----~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       116 EPEGMAVSPDGKIVV-NTSETTN----MAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             CcceEEECCCCCEEE-EEecCCC----eEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence            346788999998774 4443322    2344677677665554332 345789999999988554 56899999999998


Q ss_pred             eeEEEEeeCC-------CCEEEEEEeeCCCEEEEE-eCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE-C
Q psy9319          85 TCIRTFQRLD-------WPVRAISFSHDGALIASG-SEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC-D  155 (432)
Q Consensus        85 ~~~~~~~~h~-------~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~  155 (432)
                      ..+..+..+.       .....++|+|++.+++.+ +.++.+.+||+.+++.+..+.+...+.+++|+|+|.+|++++ .
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  269 (300)
T TIGR03866       190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV  269 (300)
T ss_pred             eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC
Confidence            8776664321       123468899999986554 456789999999988877666667899999999999998864 5


Q ss_pred             CCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         156 DKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      ++.        |.+||+.++.++..+.
T Consensus       270 ~~~--------i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       270 SND--------VSVIDVAALKVIKSIK  288 (300)
T ss_pred             CCe--------EEEEECCCCcEEEEEE
Confidence            788        7777777777666554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.48  E-value=4.8e-12  Score=121.23  Aligned_cols=160  Identities=13%  Similarity=0.121  Sum_probs=118.6

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-SKDALVSLWDAAELT   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s~dg~I~iwd~~~~~   85 (432)
                      +..+.|+|++..+++++..|.     .+.+||..+++....+..+.. +..++|+|+|+.++++ +.++.|.+||+.++.
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~-----~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSD-----TIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCceEECCCCCEEEEEECCCC-----eEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            567889999987656655444     456677778877777766544 4678999999877554 568999999999887


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC-eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE-CCCeEEEEe
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDL-TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC-DDKYDRKQD  163 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg-~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd  163 (432)
                      .+..+. +...+.+++|+|+|.++++++.++ .+.+||..++..+..+.....+.+++|+|+|.+|++++ .++.     
T Consensus       107 ~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-----  180 (300)
T TIGR03866       107 VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-----  180 (300)
T ss_pred             EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-----
Confidence            777665 334578899999999999888764 57788999888776665555667899999999886554 5888     


Q ss_pred             CCceEEeecCCCceeeee
Q psy9319         164 CGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~  181 (432)
                         +.+||+.++..+..+
T Consensus       181 ---v~i~d~~~~~~~~~~  195 (300)
T TIGR03866       181 ---VSVIDVATRKVIKKI  195 (300)
T ss_pred             ---EEEEEcCcceeeeee
Confidence               556666655554443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307|consensus

Probab=99.47  E-value=4.2e-14  Score=149.28  Aligned_cols=205  Identities=19%  Similarity=0.175  Sum_probs=140.0

Q ss_pred             cccccCCCCcc---eeeeeeecCCCceeEEEEe-ecCcceeeEEEccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q psy9319           8 PLLGLNPRPSL---YQSSVLTDISPKQLDFKFK-EHHKLEEQNILKAHPVTCICIEFDPT-GKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         8 ~~l~~~p~~~~---l~~s~s~D~~~~~~~i~~~-d~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~   82 (432)
                      +.++|.+.+..   +++++..|+.+..|+..-. .......+.++..|.+.|..+.|++. +++||+|+.||.|.|||+.
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            66777776665   4577777776655554321 01112345677889999999999995 5699999999999999998


Q ss_pred             CCeeEEEEe--eCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEecCC---ceEEEEEccCC-cEEEEEEC
Q psy9319          83 ELTCIRTFQ--RLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDICIQA---ATFTVAWHPKQ-YLLAYACD  155 (432)
Q Consensus        83 ~~~~~~~~~--~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~---~V~~l~fspdg-~~l~s~s~  155 (432)
                      ....-.++.  .....|.+++|+. ....|++++.+|.+.|||++..+.+-.+....   .+..++|||+. ..|++++.
T Consensus       148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence            754433332  2456899999998 56688999999999999999998887776333   37889999986 56666766


Q ss_pred             CCeEEEEeCCceEEeecCC-CceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         156 DKYDRKQDCGNLKVFGFLP-EPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~-~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      |..     ...|.+||++- ...++.+.+|.+..+...-+.          -+.+.   +|+..+|-.+-+|+-+.
T Consensus       228 dd~-----~PviqlWDlR~assP~k~~~~H~~GilslsWc~----------~D~~l---llSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  228 DDS-----APVIQLWDLRFASSPLKILEGHQRGILSLSWCP----------QDPRL---LLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             CCC-----CceeEeecccccCCchhhhcccccceeeeccCC----------CCchh---hhcccCCCCeeEecCCC
Confidence            654     24477787662 345666677775543332222          11122   56666666666666555

>KOG2110|consensus

Probab=99.46  E-value=1.6e-12  Score=122.51  Aligned_cols=136  Identities=20%  Similarity=0.334  Sum_probs=113.9

Q ss_pred             EEEEeecCcceeeEEEcc---CCcCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCC
Q psy9319          33 DFKFKEHHKLEEQNILKA---HPVTCICIEFDPTGKYFAVG--SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA  107 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~---h~~~V~~l~~spdg~~L~sg--s~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~  107 (432)
                      .|+++|..+.+.++++..   +...+.++++++.+.+|+.-  ...|.|.|||+.+-+.+..+..|.+.+-+++|+|+|.
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~  186 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT  186 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC
Confidence            477888889999888764   44556666666667788753  3368999999999999999999999999999999999


Q ss_pred             EEEEEeCCCe-EEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceE
Q psy9319         108 LIASGSEDLT-IDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLK  168 (432)
Q Consensus       108 ~l~sgs~dg~-V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~  168 (432)
                      +|||+|..|+ |+|+.+.+|+.+..+.   ....|.+++|+|++.+|++.|..++|++|-+....
T Consensus       187 llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  187 LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            9999999886 7899999999999996   44568999999999999999999997776665444

>KOG1408|consensus

Probab=99.46  E-value=1.2e-12  Score=132.10  Aligned_cols=198  Identities=19%  Similarity=0.266  Sum_probs=156.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC---CCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP---TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp---dg~~L~sgs~dg~I~iwd~   81 (432)
                      +-+.+++++|++..+ +++     .+.++++++++........+.+|...|.|+.||-   ..++|++++.|..|.|||+
T Consensus       460 ~G~R~~~vSp~gqhL-AsG-----Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHL-ASG-----DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV  533 (1080)
T ss_pred             cceEEEEECCCccee-ccc-----CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence            457899999999988 544     3567888898888889999999999999999986   3478999999999999997


Q ss_pred             CC-CeeEEEEeeCCC-------------------------------------------------CEEEEEEeeCCCEEEE
Q psy9319          82 AE-LTCIRTFQRLDW-------------------------------------------------PVRAISFSHDGALIAS  111 (432)
Q Consensus        82 ~~-~~~~~~~~~h~~-------------------------------------------------~V~~i~~spdg~~l~s  111 (432)
                      .. ..++.++.+|..                                                 .++.+++.|...++++
T Consensus       534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence            52 222333333322                                                 4566777777889999


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEe----cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCch
Q psy9319         112 GSEDLTIDIAHVESGKKVYDIC----IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMS  187 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~----~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~ms  187 (432)
                      ++.|..|+|||+.+|+....+.    +.+....+..+|.|.+|++++.|.+        +.++|+.+|+++....||.-.
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt--------l~~~Df~sgEcvA~m~GHsE~  685 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT--------LCFVDFVSGECVAQMTGHSEA  685 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc--------eEEEEeccchhhhhhcCcchh
Confidence            9999999999999999999985    5567888999999999999999999        899999999999999888632


Q ss_pred             hhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         188 SWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       188 s~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      .-           .....++-+.   +++.+.|..|=+|....
T Consensus       686 VT-----------G~kF~nDCkH---lISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  686 VT-----------GVKFLNDCKH---LISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ee-----------eeeecccchh---heeecCCceEEEEECch
Confidence            11           1112233334   78888899999997664

>KOG0321|consensus

Probab=99.46  E-value=3.8e-13  Score=134.27  Aligned_cols=215  Identities=18%  Similarity=0.160  Sum_probs=147.7

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEE--EccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNI--LKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~--l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd   80 (432)
                      .|.|+.+.|-| +...+++++.|.+++.|++.     ...+...  +.||.+.|.+++|.| +...|++|+.||.|.|||
T Consensus       100 ~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk-----~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen  100 KNAIFDLKWAP-GESLLVSASGDSTIRPWDVK-----TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cceeEeeccCC-CceeEEEccCCceeeeeeec-----cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            47889999999 55556888888888766665     5555544  889999999999999 567889999999999999


Q ss_pred             CCCCe---------------------------eEEEEeeCCCCEEE---EEEeeCCCEEEEEeC-CCeEEEEeCCCCcEE
Q psy9319          81 AAELT---------------------------CIRTFQRLDWPVRA---ISFSHDGALIASGSE-DLTIDIAHVESGKKV  129 (432)
Q Consensus        81 ~~~~~---------------------------~~~~~~~h~~~V~~---i~~spdg~~l~sgs~-dg~V~vwd~~~~~~~  129 (432)
                      +....                           .+.....+...|.+   +.+..|...||+++. |+.|+|||++...+.
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            86211                           01111234445555   666778889999886 999999999876544


Q ss_pred             EEE------e---c---CCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcc
Q psy9319         130 YDI------C---I---QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQ  197 (432)
Q Consensus       130 ~~~------~---~---~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~  197 (432)
                      ...      .   +   ...+.++..+..|.+|++.+.|+.|.+|++....      -..+..+.|+..+++.+....  
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s------~sP~~~~sg~~~~sf~vks~l--  325 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS------ISPVAEFSGKLNSSFYVKSEL--  325 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC------cCchhhccCcccceeeeeeec--
Confidence            332      1   2   2347778888889999999999995555543321      123444555555555433322  


Q ss_pred             cccccccCccccccccceeccCcceeecccchhHHHHHHHHHHHH
Q psy9319         198 KTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKA  242 (432)
Q Consensus       198 ~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L~~ka  242 (432)
                             .|++-.   ++++..|-..-+|.....+.....|....
T Consensus       326 -------Spd~~~---l~SgSsd~~ayiw~vs~~e~~~~~l~Ght  360 (720)
T KOG0321|consen  326 -------SPDDCS---LLSGSSDEQAYIWVVSSPEAPPALLLGHT  360 (720)
T ss_pred             -------CCCCce---EeccCCCcceeeeeecCccCChhhhhCcc
Confidence                   244444   77788887777787777666665554443

>KOG1332|consensus

Probab=99.45  E-value=4.1e-13  Score=120.21  Aligned_cols=231  Identities=21%  Similarity=0.182  Sum_probs=150.8

Q ss_pred             EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---eeEEEEeeCCCCEEEEEEee--CCCEEEEEeCCCeEEEEe
Q psy9319          48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL---TCIRTFQRLDWPVRAISFSH--DGALIASGSEDLTIDIAH  122 (432)
Q Consensus        48 l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd  122 (432)
                      -..|...|..+...--|..|++++.|++|+||...+.   ..+.++.+|.++|+.++|..  -|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3568888888877778999999999999999998753   46789999999999999975  899999999999999999


Q ss_pred             CCCCcEEE--EEe-cCCceEEEEEccC--CcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcc
Q psy9319         123 VESGKKVY--DIC-IQAATFTVAWHPK--QYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQ  197 (432)
Q Consensus       123 ~~~~~~~~--~~~-~~~~V~~l~fspd--g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~  197 (432)
                      -.+|.-..  ... |.+.|++++|.|.  |-.|++++.||.|+|.+...--.|+...-.. ..-.|-..-||..+.... 
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~-aH~~GvnsVswapa~~~g-  164 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF-AHEIGVNSVSWAPASAPG-  164 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh-ccccccceeeecCcCCCc-
Confidence            88874322  222 8899999999996  4789999999997776654433444321100 001121223333322110 


Q ss_pred             cccccccCccccccccceeccCcceeecccchhHHHHHHH-HHHHH---hhh--CCCc-ceeeeeeeeeecceeeeCCCC
Q psy9319         198 KTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQI-LKKKA---LEK--NEDE-FHTHMINARLVDGEHFENPKP  270 (432)
Q Consensus       198 ~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~-L~~ka---~~~--np~e-f~~~m~~~~~~~g~~~~~~~~  270 (432)
                         ....++......-+.++.-|+.+.+|++....=.+.. |+...   ++.  -|.- |--.-+.+..+||..+.=...
T Consensus       165 ---~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  165 ---SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ---cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence               0001111111234789999999999999985323322 32221   111  2433 555556677788877664333


Q ss_pred             CCCCCHHHHHHhhh
Q psy9319         271 EAEDSEEQKLLMDT  284 (432)
Q Consensus       271 ~~~~~~~~~~~~~t  284 (432)
                      + ++.+-+.+||++
T Consensus       242 ~-e~e~wk~tll~~  254 (299)
T KOG1332|consen  242 E-EYEPWKKTLLEE  254 (299)
T ss_pred             C-ccCccccccccc
Confidence            4 455555655554

>KOG2394|consensus

Probab=99.41  E-value=1.1e-12  Score=128.74  Aligned_cols=95  Identities=22%  Similarity=0.292  Sum_probs=86.3

Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEE
Q psy9319          51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY  130 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~  130 (432)
                      ..+.|..++|||||++||+.|.||.++|||..+...+..+..--+...|++|||||+||++|+.|.-|.||.+...+.+.
T Consensus       289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence            45688899999999999999999999999999888777777677889999999999999999999999999999998887


Q ss_pred             EEe-cCCceEEEEEcc
Q psy9319         131 DIC-IQAATFTVAWHP  145 (432)
Q Consensus       131 ~~~-~~~~V~~l~fsp  145 (432)
                      .-. |.+.|..++|+|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            765 999999999984

>KOG1034|consensus

Probab=99.40  E-value=4.8e-12  Score=117.69  Aligned_cols=115  Identities=13%  Similarity=0.170  Sum_probs=104.1

Q ss_pred             CCcCEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCC
Q psy9319          51 HPVTCICIEFDPT----GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        51 h~~~V~~l~~spd----g~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~  125 (432)
                      |......++|+-+    ..++|+|+.-|.|+|.|+.++++...+.+|.+.|+.+.+.| ..++++++|.|.+|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            6677788888763    35788999999999999999999999999999999999999 567999999999999999999


Q ss_pred             CcEEEEEe----cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         126 GKKVYDIC----IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       126 ~~~~~~~~----~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      ..|+..++    |...|.++.|+++|.+|++++.|.+|.+|+++
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            99999985    88899999999999999999999997777765

>KOG2055|consensus

Probab=99.39  E-value=5.1e-12  Score=122.10  Aligned_cols=161  Identities=11%  Similarity=0.118  Sum_probs=133.4

Q ss_pred             CCCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEe
Q psy9319           2 EGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWD   80 (432)
Q Consensus         2 ~g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd   80 (432)
                      |.-..|.++.|+|...++ .+|..|++++++.|   |-.....++.+.--..+|.+.+|.|+|. .+++++....++.||
T Consensus       211 ps~~~I~sv~FHp~~pll-lvaG~d~~lrifqv---DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLL-LVAGLDGTLRIFQV---DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             cCcCCceEEEecCCCceE-EEecCCCcEEEEEe---cCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            444568999999998877 77778888876665   3445567778877789999999999998 888999999999999


Q ss_pred             CCCCee--EEEEeeCC-CCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          81 AAELTC--IRTFQRLD-WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        81 ~~~~~~--~~~~~~h~-~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      +.+.+.  +....++. ..+..+.+||++++|+..+..|.|.+....+++.+..+...+.|..++|+.+|+.|++++.+|
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG  366 (514)
T ss_pred             ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc
Confidence            987764  33334444 357788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCc
Q psy9319         158 YDRKQDCGN  166 (432)
Q Consensus       158 ~I~vwd~~~  166 (432)
                      .|.+||++.
T Consensus       367 eV~v~nl~~  375 (514)
T KOG2055|consen  367 EVYVWNLRQ  375 (514)
T ss_pred             eEEEEecCC
Confidence            955555543

>KOG1007|consensus

Probab=99.39  E-value=4.2e-12  Score=116.27  Aligned_cols=201  Identities=20%  Similarity=0.222  Sum_probs=139.5

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCce--eEEEEeecC---------cceeeEEEc-cCCcCEEEEEEcCCCCEEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQ--LDFKFKEHH---------KLEEQNILK-AHPVTCICIEFDPTGKYFAVGS   71 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~--~~i~~~d~~---------~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs   71 (432)
                      .+-|..++.+|....++++|-.|.+...  ....+|..+         +.+++..|. .+-+.|.|+.|.|++..|++-.
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~  142 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD  142 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence            3567888999999999899887654432  234455433         234555555 4567899999999999998876


Q ss_pred             CCCeEEEEeCCCCee-EEEEe-----eCCCCEEEEEEee--CCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEE
Q psy9319          72 KDALVSLWDAAELTC-IRTFQ-----RLDWPVRAISFSH--DGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTV  141 (432)
Q Consensus        72 ~dg~I~iwd~~~~~~-~~~~~-----~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l  141 (432)
                       |..|.+|++..+.. +..+.     +|....++-+|||  +|+.+++. .|+++..||+++..+...+.  |...|..+
T Consensus       143 -dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdl  220 (370)
T KOG1007|consen  143 -DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDL  220 (370)
T ss_pred             -cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeec
Confidence             88999999987655 33222     3455678889999  77777665 57899999999998888885  88889999


Q ss_pred             EEccCC-cEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCc
Q psy9319         142 AWHPKQ-YLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKD  220 (432)
Q Consensus       142 ~fspdg-~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D  220 (432)
                      .|+|+- .+|++|+.||.|+|||.+..       ...++.+.+|+--.|.           .|..|....  -+|+++.|
T Consensus       221 DfNpnkq~~lvt~gDdgyvriWD~R~t-------k~pv~el~~HsHWvW~-----------VRfn~~hdq--LiLs~~SD  280 (370)
T KOG1007|consen  221 DFNPNKQHILVTCGDDGYVRIWDTRKT-------KFPVQELPGHSHWVWA-----------VRFNPEHDQ--LILSGGSD  280 (370)
T ss_pred             cCCCCceEEEEEcCCCccEEEEeccCC-------CccccccCCCceEEEE-----------EEecCccce--EEEecCCC
Confidence            999975 67889999999666665542       2345556666533332           122222211  25666666


Q ss_pred             ceeecc
Q psy9319         221 YRVRAD  226 (432)
Q Consensus       221 ~~lR~~  226 (432)
                      -.+-+|
T Consensus       281 s~V~Ls  286 (370)
T KOG1007|consen  281 SAVNLS  286 (370)
T ss_pred             ceeEEE
Confidence            666665

>KOG2919|consensus

Probab=99.39  E-value=3.9e-12  Score=118.11  Aligned_cols=151  Identities=18%  Similarity=0.171  Sum_probs=114.6

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeec-Cccee--eEEEc-----cCCcCEEEEEEcC-CCCEEEEEeCCCeEEE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH-HKLEE--QNILK-----AHPVTCICIEFDP-TGKYFAVGSKDALVSL   78 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~-~~~~~--~~~l~-----~h~~~V~~l~~sp-dg~~L~sgs~dg~I~i   78 (432)
                      .++.|+|+|..+++.  ..+     .|+++|. .+|..  +....     +..+-+.|++||| +...++.|+....+-|
T Consensus       162 hsL~Fs~DGeqlfaG--ykr-----cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~gi  234 (406)
T KOG2919|consen  162 HSLQFSPDGEQLFAG--YKR-----CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGI  234 (406)
T ss_pred             eeEEecCCCCeEeec--ccc-----eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeee
Confidence            689999999988544  233     4455554 34432  22222     3367899999999 5568999999999999


Q ss_pred             EeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEeCCC-CcEEEEEe-cCC---ceEEEEEccCCcEEEE
Q psy9319          79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE-DLTIDIAHVES-GKKVYDIC-IQA---ATFTVAWHPKQYLLAY  152 (432)
Q Consensus        79 wd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-dg~V~vwd~~~-~~~~~~~~-~~~---~V~~l~fspdg~~l~s  152 (432)
                      |.-..+.++..+.+|.+.|+.+.|.++|+.|++|+. |..|.+||++. ..++..+. |..   .-.-+...|+|.+|++
T Consensus       235 y~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las  314 (406)
T KOG2919|consen  235 YNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS  314 (406)
T ss_pred             EecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec
Confidence            999999999999999999999999999999999984 77899999985 44555553 332   2223556789999999


Q ss_pred             EECCCeEEEEeCC
Q psy9319         153 ACDDKYDRKQDCG  165 (432)
Q Consensus       153 ~s~d~~I~vwd~~  165 (432)
                      |+.||.|++||+.
T Consensus       315 G~tdG~V~vwdlk  327 (406)
T KOG2919|consen  315 GDTDGSVRVWDLK  327 (406)
T ss_pred             cCCCccEEEEecC
Confidence            9999997666664

>KOG1007|consensus

Probab=99.38  E-value=2.7e-12  Score=117.51  Aligned_cols=151  Identities=14%  Similarity=0.183  Sum_probs=114.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCccee-eEEEc-----cCCcCEEEEEEcC--CCCEEEEEeCCCeEE
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE-QNILK-----AHPVTCICIEFDP--TGKYFAVGSKDALVS   77 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~-~~~l~-----~h~~~V~~l~~sp--dg~~L~sgs~dg~I~   77 (432)
                      -|.|+.|.|++..+ ++ ..|     -.|.+|+...+.. +..+.     +|....++-+|||  +|+.+++.+ |+++.
T Consensus       125 ~i~cvew~Pns~kl-as-m~d-----n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~  196 (370)
T KOG1007|consen  125 KINCVEWEPNSDKL-AS-MDD-----NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ  196 (370)
T ss_pred             ceeeEEEcCCCCee-EE-ecc-----CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence            56899999988766 33 223     3556666655544 33332     3566788899999  788887765 88999


Q ss_pred             EEeCCCCeeEEEEe-eCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCC-cEEEE
Q psy9319          78 LWDAAELTCIRTFQ-RLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQ-YLLAY  152 (432)
Q Consensus        78 iwd~~~~~~~~~~~-~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg-~~l~s  152 (432)
                      .||+++..+...+. .|...|+.+.|+|+- .+|++|++||.|++||.+.. .++..+. |...|+++.|+|.. .+|++
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence            99999887766664 688889999999954 57889999999999999864 4566665 88899999999954 67888


Q ss_pred             EECCCeEEEEeC
Q psy9319         153 ACDDKYDRKQDC  164 (432)
Q Consensus       153 ~s~d~~I~vwd~  164 (432)
                      ||.|..|.+|..
T Consensus       277 ~~SDs~V~Lsca  288 (370)
T KOG1007|consen  277 GGSDSAVNLSCA  288 (370)
T ss_pred             cCCCceeEEEec
Confidence            999998555544

>KOG1538|consensus

Probab=99.38  E-value=1.4e-12  Score=130.57  Aligned_cols=152  Identities=18%  Similarity=0.191  Sum_probs=124.2

Q ss_pred             CCCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           2 EGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         2 ~g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      |+..||..++|-|+|+.++.++.       -.+.++|+..|..++++++|...|+|++|+.||..++||+.|..|.+|..
T Consensus        10 ~~~hci~d~afkPDGsqL~lAAg-------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~   82 (1081)
T KOG1538|consen   10 KAEHCINDIAFKPDGTQLILAAG-------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS   82 (1081)
T ss_pred             ccccchheeEECCCCceEEEecC-------CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecc
Confidence            57789999999999999866632       25678899999999999999999999999999999999999999999997


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      .-.. +..+ .|...|.|+.|+|-...|+|++-+ ..-+|...... +........|.+++|..||.+++.|..+|+|.+
T Consensus        83 klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen   83 KLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISI  158 (1081)
T ss_pred             cccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEe
Confidence            5322 2233 499999999999988899998854 25678764332 222335566889999999999999999999888


Q ss_pred             EeC
Q psy9319         162 QDC  164 (432)
Q Consensus       162 wd~  164 (432)
                      -+.
T Consensus       159 RNk  161 (1081)
T KOG1538|consen  159 RNK  161 (1081)
T ss_pred             ecC
Confidence            754

>KOG4378|consensus

Probab=99.38  E-value=3.7e-12  Score=123.90  Aligned_cols=142  Identities=20%  Similarity=0.208  Sum_probs=108.6

Q ss_pred             ceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCC-CC
Q psy9319          18 LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD-WP   96 (432)
Q Consensus        18 ~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~   96 (432)
                      ++++++...+.+++|+++     ...+.+.+.+|...|+++.++....+||+++..|.|.|..+.++.....|.... ..
T Consensus        92 ~y~~sgG~~~~Vkiwdl~-----~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLR-----AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             eeeeccCcCceeeehhhH-----HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence            566777766666665554     556677899999999999999999999999999999999999988877777443 45


Q ss_pred             EEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccC-CcEEEEEECCCeEEEEeC
Q psy9319          97 VRAISFSHDGA-LIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPK-QYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        97 V~~i~~spdg~-~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspd-g~~l~s~s~d~~I~vwd~  164 (432)
                      |+-+.|+|..+ +|.+++.+|.|.+||+....+...+.  |..+...++|+|. ..+|++.+.|..|.+||.
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence            67899999665 56678899999999998766665543  6666666667663 355666666666666664

>KOG1034|consensus

Probab=99.38  E-value=1.7e-12  Score=120.72  Aligned_cols=134  Identities=19%  Similarity=0.168  Sum_probs=109.4

Q ss_pred             ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeEEEEe---eCCCCEEEEEEeeC
Q psy9319          30 KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT-GKYFAVGSKDALVSLWDAAELTCIRTFQ---RLDWPVRAISFSHD  105 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~i~~spd  105 (432)
                      ..+.|++.|+.++++...+.+|.+.|+.+.|+|+ .++++++|.|.+|++|++.+..|+..|-   +|...|.++.|+++
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            4578889999999999999999999999999995 5889999999999999999999988875   68999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcEE-------------------------EEE--e--cCCceEEEEEccCCcEEEEEECC
Q psy9319         106 GALIASGSEDLTIDIAHVESGKKV-------------------------YDI--C--IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       106 g~~l~sgs~dg~V~vwd~~~~~~~-------------------------~~~--~--~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      |.+|++++.|.++++|++...+..                         ..+  .  |...|-|+.|-  |.++++-|.+
T Consensus       193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce  270 (385)
T KOG1034|consen  193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE  270 (385)
T ss_pred             CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence            999999999999999999732110                         000  0  33344445554  6788888888


Q ss_pred             CeEEEEeCC
Q psy9319         157 KYDRKQDCG  165 (432)
Q Consensus       157 ~~I~vwd~~  165 (432)
                      +.|..|-.+
T Consensus       271 naI~~w~pg  279 (385)
T KOG1034|consen  271 NAIVCWKPG  279 (385)
T ss_pred             ceEEEEecc
Confidence            886666654

>KOG1408|consensus

Probab=99.37  E-value=3.6e-12  Score=128.66  Aligned_cols=155  Identities=17%  Similarity=0.156  Sum_probs=122.0

Q ss_pred             ccccccCC-C-CcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEE------------------------
Q psy9319           7 IPLLGLNP-R-PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEF------------------------   60 (432)
Q Consensus         7 I~~l~~~p-~-~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~------------------------   60 (432)
                      |.|+.++- . +..++++++.|+-+.++++..    +..+++++.+|+..|+++.|                        
T Consensus       504 ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q  579 (1080)
T KOG1408|consen  504 ILCLEYSFPVLTNKLLASASRDRLIHVYDVKR----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ  579 (1080)
T ss_pred             eEEEeecCchhhhHhhhhccCCceEEEEeccc----ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc
Confidence            56677653 2 334568888888777766642    33445555555555555544                        


Q ss_pred             -------------------------cCCCCEEEEEeCCCeEEEEeCCCCeeEEEEee---CCCCEEEEEEeeCCCEEEEE
Q psy9319          61 -------------------------DPTGKYFAVGSKDALVSLWDAAELTCIRTFQR---LDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        61 -------------------------spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~i~~spdg~~l~sg  112 (432)
                                               .|...++++++.|..|+|||+.+|+....|.+   |++...-+...|.|.|+++.
T Consensus       580 k~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atS  659 (1080)
T KOG1408|consen  580 KASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATS  659 (1080)
T ss_pred             cccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEe
Confidence                                     44445777888889999999999999999975   66778889999999999999


Q ss_pred             eCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         113 SEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       113 s~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +.|.++.++|+.+|+|+.... |...|+.+.|.+|.++|++.+.||.|.||-+.
T Consensus       660 csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  660 CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            999999999999999998875 88889999999999999999999996666553

>KOG2055|consensus

Probab=99.37  E-value=8.9e-12  Score=120.44  Aligned_cols=154  Identities=10%  Similarity=0.056  Sum_probs=125.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEEccCC-cCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILKAHP-VTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~~h~-~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      .|+++.|.|+|...+++++     +---++.||..+.+.  +..+.|+. ..+..+..||++++|+..+..|.|.|....
T Consensus       259 Pi~~a~f~p~G~~~i~~s~-----rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  259 PIQKAEFAPNGHSVIFTSG-----RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             ccceeeecCCCceEEEecc-----cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence            4688899999984434433     233456677766644  33444554 356778889999999999999999999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceE--EEEEccCCcEEEEEECCCeEE
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATF--TVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~--~l~fspdg~~l~s~s~d~~I~  160 (432)
                      ++..+.++. -.+.|..++|+.||..|+.++.+|.|++||++...++..+...+.|.  +++.+++|.+||+||..|.|.
T Consensus       334 T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN  412 (514)
T KOG2055|consen  334 TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN  412 (514)
T ss_pred             hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence            999998887 67889999999999999999999999999999999999998666654  577779999999999999988


Q ss_pred             EEeCC
Q psy9319         161 KQDCG  165 (432)
Q Consensus       161 vwd~~  165 (432)
                      |||..
T Consensus       413 IYd~~  417 (514)
T KOG2055|consen  413 IYDGN  417 (514)
T ss_pred             Eeccc
Confidence            88854

>KOG2048|consensus

Probab=99.36  E-value=2e-11  Score=122.95  Aligned_cols=153  Identities=20%  Similarity=0.179  Sum_probs=120.4

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ...|..++|.+.+.++ ++ ..+     +.|..||+.++++...+....+.|++++.+|.+..++.|+.||.+..++...
T Consensus        69 drsIE~L~W~e~~RLF-S~-g~s-----g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p  141 (691)
T KOG2048|consen   69 DRSIESLAWAEGGRLF-SS-GLS-----GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP  141 (691)
T ss_pred             CCceeeEEEccCCeEE-ee-cCC-----ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence            3567889999777765 33 233     4556677779999999999999999999999999999999999888888877


Q ss_pred             CeeEE--EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---------cCCceEEEEEccCCcEEEE
Q psy9319          84 LTCIR--TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC---------IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        84 ~~~~~--~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---------~~~~V~~l~fspdg~~l~s  152 (432)
                      +....  .|....+.|.+++|+|++..|++||.||.|++||..++..+....         ...-|+++.|-.+ ..|++
T Consensus       142 ~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~s  220 (691)
T KOG2048|consen  142 DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIAS  220 (691)
T ss_pred             ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEE
Confidence            66533  333456899999999999999999999999999999998887332         1223777777755 46888


Q ss_pred             EECCCeEEEEeC
Q psy9319         153 ACDDKYDRKQDC  164 (432)
Q Consensus       153 ~s~d~~I~vwd~  164 (432)
                      |...|+|.+||.
T Consensus       221 gDS~G~V~FWd~  232 (691)
T KOG2048|consen  221 GDSAGTVTFWDS  232 (691)
T ss_pred             ecCCceEEEEcc
Confidence            999999666654

>KOG2919|consensus

Probab=99.36  E-value=4.6e-12  Score=117.60  Aligned_cols=192  Identities=15%  Similarity=0.141  Sum_probs=129.6

Q ss_pred             CCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc--CCc---CEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCee
Q psy9319          13 NPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA--HPV---TCICIEFDPTGKYFAVGSKDALVSLWDA-AELTC   86 (432)
Q Consensus        13 ~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~--h~~---~V~~l~~spdg~~L~sgs~dg~I~iwd~-~~~~~   86 (432)
                      .|+.+++ ++.+     +.-.|.+||..+|+.-..+.+  |..   ...|++|+|||..|++|. ...|++||+ +.|.-
T Consensus       120 qP~t~l~-a~ss-----r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~  192 (406)
T KOG2919|consen  120 QPSTNLF-AVSS-----RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRD  192 (406)
T ss_pred             CCcccee-eecc-----ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCC
Confidence            3556655 3333     445667777788888777765  322   345999999999998775 668999999 44432


Q ss_pred             E---EEE----eeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEEC-C
Q psy9319          87 I---RTF----QRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACD-D  156 (432)
Q Consensus        87 ~---~~~----~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~-d  156 (432)
                      .   .++    .+..+.+.+++|+| +...++.|+-...+-|+.-..+.++..+. |.+.|+.+.|+++|+.|++|.. |
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~  272 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD  272 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCC
Confidence            1   122    12367899999999 66689999998899999888888888876 9999999999999999999875 5


Q ss_pred             CeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhh-hcccccccccCccccccccceeccCcceeecccchh
Q psy9319         157 KYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAK-VNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~-~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ..|-.||++..+       ..+-.+..|        +. .+||..-.. .|.+..   +.++..|..+|+||...
T Consensus       273 dkIl~WDiR~~~-------~pv~~L~rh--------v~~TNQRI~FDl-d~~~~~---LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  273 DKILCWDIRYSR-------DPVYALERH--------VGDTNQRILFDL-DPKGEI---LASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CeEEEEeehhcc-------chhhhhhhh--------ccCccceEEEec-CCCCce---eeccCCCccEEEEecCC
Confidence            554444443322       222222222        11 122222111 233333   56777999999999876

>KOG1523|consensus

Probab=99.35  E-value=2.1e-11  Score=113.21  Aligned_cols=217  Identities=17%  Similarity=0.170  Sum_probs=150.7

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCc-ceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC-
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK-LEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA-   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~-   81 (432)
                      ...|.|.+|+++...++++. ...   .-.|+-+.-.. .+..+++..|...|++++|+|.++.|++++.|..-++|.. 
T Consensus        10 ~~pitchAwn~drt~iAv~~-~~~---evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSP-NNH---EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             cCceeeeeecCCCceEEecc-CCc---eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            35689999999999885553 222   22222223333 5788999999999999999999999999999999999998 


Q ss_pred             CC--CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE-----EecCCceEEEEEccCCcEEEEEE
Q psy9319          82 AE--LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD-----ICIQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        82 ~~--~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~-----~~~~~~V~~l~fspdg~~l~s~s  154 (432)
                      ..  .++...+..+...++++.|+|.++.|++||....|.||=++.......     .++.+.|.++.|+|++-+|++||
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            33  345566667889999999999999999999999999998876555422     23677899999999999999999


Q ss_pred             CCCeEEEEeCCceEEeecCCCceeeeec------CCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         155 DDKYDRKQDCGNLKVFGFLPEPIKKRKR------GGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       155 ~d~~I~vwd~~~i~vwd~~~~~~~~~~~------g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      .|+..||+..   +|=++++.+ -..-+      |..|+-+.   ....-.|.....|.+..   +-=...|-.+-+-|.
T Consensus       166 ~D~k~rVfSa---yIK~Vdekp-ap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~---lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  166 TDGKCRVFSA---YIKGVDEKP-APTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNR---LAWVGHDSTVSFVDA  235 (361)
T ss_pred             cCcceeEEEE---eeeccccCC-CCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCE---eeEecCCCceEEeec
Confidence            9999888873   333443322 11222      22355443   12223444444444433   333344666666666


Q ss_pred             hhHHHH
Q psy9319         229 NKKKKT  234 (432)
Q Consensus       229 ~~k~~~  234 (432)
                      ....+.
T Consensus       236 ~~p~~~  241 (361)
T KOG1523|consen  236 AGPSER  241 (361)
T ss_pred             CCCchh
Confidence            655443

>KOG0771|consensus

Probab=99.35  E-value=4.3e-12  Score=121.58  Aligned_cols=147  Identities=18%  Similarity=0.194  Sum_probs=120.5

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      .+++|+++++.+ +++..|+.     +++|+.++...+.....|.+.|.++.|||||.+|++.+.| ..+||+..+|.++
T Consensus       148 k~vaf~~~gs~l-atgg~dg~-----lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKL-ATGGTDGT-----LRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEe-eeccccce-----EEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence            567889998887 66666665     4666656777888888899999999999999999999999 9999999876221


Q ss_pred             EEEe-----------------------------e------------C-------------CCCEEEEEEeeCCCEEEEEe
Q psy9319          88 RTFQ-----------------------------R------------L-------------DWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        88 ~~~~-----------------------------~------------h-------------~~~V~~i~~spdg~~l~sgs  113 (432)
                      ....                             .            +             ...|+++++|++|++++.|+
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            1110                             0            0             12689999999999999999


Q ss_pred             CCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319         114 EDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      .||.|.|++..+.+.+...+  |...|+.+.|+|+.+++++.+.+..+.+
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            99999999999999888876  8889999999999999999888887444

>KOG1310|consensus

Probab=99.34  E-value=2.7e-12  Score=126.21  Aligned_cols=127  Identities=21%  Similarity=0.328  Sum_probs=106.8

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe-eCCCCEEEEEEee--CCCEEEEEeCCCeEE
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSH--DGALIASGSEDLTID  119 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~i~~sp--dg~~l~sgs~dg~V~  119 (432)
                      .+...|.||++.|.|+.|+.+|.+|++||+|-.+.|||....+.++.+. +|...|.++.|-|  ..+.+++|+.|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            4556789999999999999999999999999999999998888877774 8999999999999  566889999999999


Q ss_pred             EEeCCCCc----------EEEEE-ecCCceEEEEEccCC-cEEEEEECCCeEEEEeCCceEE
Q psy9319         120 IAHVESGK----------KVYDI-CIQAATFTVAWHPKQ-YLLAYACDDKYDRKQDCGNLKV  169 (432)
Q Consensus       120 vwd~~~~~----------~~~~~-~~~~~V~~l~fspdg-~~l~s~s~d~~I~vwd~~~i~v  169 (432)
                      ++|+...+          ....+ .|...|..++-.|++ +.+.+++.||+|+-+|++.-.+
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~  182 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV  182 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence            99997421          12222 277888999999988 7889999999988888765433

>KOG0649|consensus

Probab=99.34  E-value=2.5e-11  Score=108.84  Aligned_cols=203  Identities=14%  Similarity=0.073  Sum_probs=145.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecC----cc-eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH----KL-EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLW   79 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~----~~-~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iw   79 (432)
                      |-|+.-+++|.+..+ +++..++.+-...+.-.+..    .+ ..+...++|.++|+.++|.  ..+|++|+ ||.|+=|
T Consensus        11 ~tvf~qa~sp~~~~l-~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYL-FAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCcceEE-EEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            446677899998876 77777776655555432221    12 2345568999999999998  45677776 5999988


Q ss_pred             eCCCCee------EE--EEeeC-----CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEcc
Q psy9319          80 DAAELTC------IR--TFQRL-----DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHP  145 (432)
Q Consensus        80 d~~~~~~------~~--~~~~h-----~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fsp  145 (432)
                      -.+....      +-  ...-|     -..|+++...|..+-+++++.|+.++.||+++|+....+. |..-|.+++--.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            6542111      00  00112     2368899999977777888899999999999999999987 888899988855


Q ss_pred             CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceee-
Q psy9319         146 KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVR-  224 (432)
Q Consensus       146 dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR-  224 (432)
                      ....+++|+.||+        +++||..++++++.+..              ..|..+..|....+.|-|..+.||.+. 
T Consensus       167 ~~~qilsG~EDGt--------vRvWd~kt~k~v~~ie~--------------yk~~~~lRp~~g~wigala~~edWlvCG  224 (325)
T KOG0649|consen  167 ANGQILSGAEDGT--------VRVWDTKTQKHVSMIEP--------------YKNPNLLRPDWGKWIGALAVNEDWLVCG  224 (325)
T ss_pred             cCcceeecCCCcc--------EEEEeccccceeEEecc--------------ccChhhcCcccCceeEEEeccCceEEec
Confidence            5567899999999        77777888777765532              455566678888888888888887654 


Q ss_pred             ------cccchhHHH
Q psy9319         225 ------ADHFNKKKK  233 (432)
Q Consensus       225 ------~~d~~~k~~  233 (432)
                            +|.....+.
T Consensus       225 gGp~lslwhLrsse~  239 (325)
T KOG0649|consen  225 GGPKLSLWHLRSSES  239 (325)
T ss_pred             CCCceeEEeccCCCc
Confidence                  565554443

>KOG4328|consensus

Probab=99.34  E-value=1.4e-11  Score=119.08  Aligned_cols=175  Identities=17%  Similarity=0.191  Sum_probs=126.8

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEE---------------------------------------EEeecCccee-e
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDF---------------------------------------KFKEHHKLEE-Q   45 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i---------------------------------------~~~d~~~~~~-~   45 (432)
                      .|.++.|+|...--+.+.|.|++++..++                                       .+||..++.. .
T Consensus       236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~  315 (498)
T KOG4328|consen  236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY  315 (498)
T ss_pred             cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence            36777777766555566677777665443                                       2344433322 4


Q ss_pred             EEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC--e--eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEE
Q psy9319          46 NILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAEL--T--CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI  120 (432)
Q Consensus        46 ~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~--~--~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~v  120 (432)
                      ..+.-|...|.+++++| ...+|++||.|++++|||++..  +  ++.....|...|.+..|||++..|+|.+.|..|+|
T Consensus       316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence            44566888999999999 5678999999999999999742  1  22334469999999999998777999999999999


Q ss_pred             EeCC----CCcEEEEEecCCc------eEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchh
Q psy9319         121 AHVE----SGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSS  188 (432)
Q Consensus       121 wd~~----~~~~~~~~~~~~~------V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss  188 (432)
                      ||..    .-.+...+.|...      .....|+|+..++++|-.-..        |-++|-..++.+..+.+...++
T Consensus       396 ~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~--------IDv~~~~~~q~v~el~~P~~~t  465 (498)
T KOG4328|consen  396 FDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP--------IDVFDGNGGQMVCELHDPESST  465 (498)
T ss_pred             eecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc--------eeEEcCCCCEEeeeccCccccc
Confidence            9983    3445555554332      445789999999999987776        7888888777777776665444

>KOG0290|consensus

Probab=99.32  E-value=1.9e-11  Score=112.03  Aligned_cols=158  Identities=19%  Similarity=0.138  Sum_probs=121.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .+.++.|+--...++.++|-|.+..+|++...  ..+.....|-+|...|..++|...| ..|++.+.||+|++||++..
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~--~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l  229 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL  229 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeec--cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence            35677788777778899999998877777632  1233455677999999999999865 67899999999999999865


Q ss_pred             eeEEEEee---CCCCEEEEEEee-CCCEEEEEeCC-CeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCC-cEEEEEECC
Q psy9319          85 TCIRTFQR---LDWPVRAISFSH-DGALIASGSED-LTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQ-YLLAYACDD  156 (432)
Q Consensus        85 ~~~~~~~~---h~~~V~~i~~sp-dg~~l~sgs~d-g~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg-~~l~s~s~d  156 (432)
                      .....+..   ...+...++|++ |.+++|+-..| ..|.|.|++.. .++..+. |.+.|..++|.|.. .+|++++.|
T Consensus       230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence            54333332   134677889998 77888887654 57999999864 5666675 99999999999965 789999999


Q ss_pred             CeEEEEeCC
Q psy9319         157 KYDRKQDCG  165 (432)
Q Consensus       157 ~~I~vwd~~  165 (432)
                      ..+-+||+.
T Consensus       310 ~qaliWDl~  318 (364)
T KOG0290|consen  310 CQALIWDLQ  318 (364)
T ss_pred             ceEEEEecc
Confidence            985555553

>KOG1445|consensus

Probab=99.32  E-value=2.5e-12  Score=128.15  Aligned_cols=114  Identities=20%  Similarity=0.316  Sum_probs=101.1

Q ss_pred             CcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------eeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEe
Q psy9319          52 PVTCICIEFDP-TGKYFAVGSKDALVSLWDAAEL-------TCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAH  122 (432)
Q Consensus        52 ~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd  122 (432)
                      ...|+.+.|.| |...|+.+++||.|+||.+..+       .+...+..|...|+++.|+| -...|++++.|.+|.+||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            35699999999 8889999999999999998643       34567788999999999999 566899999999999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         123 VESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       123 ~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +.++.....+. |.+.|..++|||+|+.+++.+.||+|++|..+
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence            99998777665 99999999999999999999999998888763

>KOG2394|consensus

Probab=99.31  E-value=1.3e-11  Score=121.39  Aligned_cols=126  Identities=18%  Similarity=0.314  Sum_probs=100.7

Q ss_pred             CcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC--------------Ce--------------eEEEEeeCCCCEEEEEE
Q psy9319          52 PVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE--------------LT--------------CIRTFQRLDWPVRAISF  102 (432)
Q Consensus        52 ~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~--------------~~--------------~~~~~~~h~~~V~~i~~  102 (432)
                      ...|+|+.|-| +...++.+..+|.+++||...              +.              ++..+.--.+.|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            36799999999 456777788899999997531              10              11111222457889999


Q ss_pred             eeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         103 SHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       103 spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      ||||++||+.|.||.++|+|+.+.+.+..+. .-+...|++|||||++|++|+.|.-        +.||.+..+.++..-
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL--------VtVwSf~erRVVARG  370 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL--------VTVWSFEERRVVARG  370 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcce--------EEEEEeccceEEEec
Confidence            9999999999999999999999888777665 6778999999999999999999998        778888877777777


Q ss_pred             cCCC
Q psy9319         182 RGGT  185 (432)
Q Consensus       182 ~g~~  185 (432)
                      .||.
T Consensus       371 qGHk  374 (636)
T KOG2394|consen  371 QGHK  374 (636)
T ss_pred             cccc
Confidence            7764

>KOG2110|consensus

Probab=99.30  E-value=3e-10  Score=107.44  Aligned_cols=96  Identities=23%  Similarity=0.352  Sum_probs=87.3

Q ss_pred             CceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCeeEEEEeeCC--CCEEEEEEeeC
Q psy9319          29 PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDAL-VSLWDAAELTCIRTFQRLD--WPVRAISFSHD  105 (432)
Q Consensus        29 ~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~-I~iwd~~~~~~~~~~~~h~--~~V~~i~~spd  105 (432)
                      ...+++.+||..+.+.+..+..|.+++.|++|+|+|.+||++|..|+ |+||.+.+|+.+..|.-..  ..|.+++|+|+
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            34789999999999999999999999999999999999999999997 6799999999999987543  35889999999


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q psy9319         106 GALIASGSEDLTIDIAHVE  124 (432)
Q Consensus       106 g~~l~sgs~dg~V~vwd~~  124 (432)
                      +.+|++.|..++|.++-+.
T Consensus       230 s~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  230 SQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CCeEEEecCCCeEEEEEec
Confidence            9999999999999999774

>KOG1240|consensus

Probab=99.29  E-value=8.6e-11  Score=125.11  Aligned_cols=247  Identities=11%  Similarity=0.002  Sum_probs=159.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeec--CcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH--HKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~--~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+..++.++.+.-++++||.|++++.|+.+-...  .+.....++.--...+.++...+.|..+|.|+.||.|.+.+++.
T Consensus      1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            3445666666644559999999999999874322  23344555555568899999999999999999999999999875


Q ss_pred             --Ce-----eEEEEeeC-CCCEEE-EEEee-CCC-EEEEEeCCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcE
Q psy9319          84 --LT-----CIRTFQRL-DWPVRA-ISFSH-DGA-LIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYL  149 (432)
Q Consensus        84 --~~-----~~~~~~~h-~~~V~~-i~~sp-dg~-~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~  149 (432)
                        ..     +......+ .+.+.+ -+|.. .+. .++.+...+.|..||+++......+.   ..+.|++++.+|.+.+
T Consensus      1130 ~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W 1209 (1431)
T KOG1240|consen 1130 YNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW 1209 (1431)
T ss_pred             cccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceE
Confidence              21     11111222 233333 34443 344 67778888999999999887766664   5677999999999999


Q ss_pred             EEEEECCCeEEEEeCC----------------------------------------ceEEeecCCCceeeeecCC-Cchh
Q psy9319         150 LAYACDDKYDRKQDCG----------------------------------------NLKVFGFLPEPIKKRKRGG-TMSS  188 (432)
Q Consensus       150 l~s~s~d~~I~vwd~~----------------------------------------~i~vwd~~~~~~~~~~~g~-~mss  188 (432)
                      +++|+..|.+-+||++                                        .+.+|++.+|.+...++.. ....
T Consensus      1210 lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1210 LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI 1289 (1431)
T ss_pred             EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcc
Confidence            9999999999999974                                        2566777777666666655 3333


Q ss_pred             hhHHhhhc-----ccccccccCccccccccceeccCcceeecccchhHHHHH-HHHHHHHhhhCCCcceee
Q psy9319         189 WVKAAKVN-----QKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTL-QILKKKALEKNEDEFHTH  253 (432)
Q Consensus       189 ~~~a~~~~-----~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l-~~L~~ka~~~np~ef~~~  253 (432)
                      +..+..+.     ...+.-..-+.... .-++.+..|..||.||+-..+.-- ..-...+...+++++|..
T Consensus      1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~ 1359 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDL 1359 (1431)
T ss_pred             hhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccccccccCccccccccchhccc
Confidence            33333321     00010011011111 124788899999999998755431 111112244456666543

>KOG0649|consensus

Probab=99.28  E-value=4.4e-10  Score=100.90  Aligned_cols=149  Identities=12%  Similarity=0.079  Sum_probs=114.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|+++.+.|..+.++.++ .|     ..++.||+.+|+....+.||+..|.|+.--.....+++|+.||+++|||..+++
T Consensus       116 eINam~ldP~enSi~~Ag-GD-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k  189 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAG-GD-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK  189 (325)
T ss_pred             ccceeEeccCCCcEEEec-CC-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc
Confidence            467788888776665554 33     466778888999999999999999999874545578999999999999999999


Q ss_pred             eEEEEeeC----------CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC
Q psy9319          86 CIRTFQRL----------DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        86 ~~~~~~~h----------~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ++..+...          ...|.+++.+  ..++++| ....+.+|.+++.++...++.++.|..+.|..  ..+++++.
T Consensus       190 ~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~  264 (325)
T KOG0649|consen  190 HVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGE  264 (325)
T ss_pred             eeEEeccccChhhcCcccCceeEEEecc--CceEEec-CCCceeEEeccCCCceEEEecccceeEeeeec--ceEEEecc
Confidence            98877432          1235555554  4466554 45679999999999999999999999999974  45777777


Q ss_pred             CCeEEEEeCC
Q psy9319         156 DKYDRKQDCG  165 (432)
Q Consensus       156 d~~I~vwd~~  165 (432)
                      .+.+.-|.++
T Consensus       265 g~~v~~~~l~  274 (325)
T KOG0649|consen  265 GNHVQSYTLN  274 (325)
T ss_pred             ccceeeeeec
Confidence            7775555543

>KOG1063|consensus

Probab=99.28  E-value=1.2e-11  Score=124.71  Aligned_cols=120  Identities=23%  Similarity=0.362  Sum_probs=101.9

Q ss_pred             eEEEccCCcCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEE
Q psy9319          45 QNILKAHPVTCICIEFDPTGKYFAVGSKDA-----LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTID  119 (432)
Q Consensus        45 ~~~l~~h~~~V~~l~~spdg~~L~sgs~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~  119 (432)
                      ++.+.||...|+|++.||+|+++||++...     .|++|+..+...+..+.+|.-.|+.++|||||++|++.|.|.++.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            445679999999999999999999997654     599999999988889999999999999999999999999999999


Q ss_pred             EEeCCCCcEE----EEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         120 IAHVESGKKV----YDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       120 vwd~~~~~~~----~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +|........    ... .|..-|+++.|+|++.+++|+|.|..|.+|..
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            9987543211    112 37788999999999999999999999444443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.28  E-value=3.6e-10  Score=110.93  Aligned_cols=154  Identities=28%  Similarity=0.358  Sum_probs=122.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~   83 (432)
                      ..|..+.++|++..+ ++++.    ....+.+|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...
T Consensus       156 ~~v~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         156 ESVTSLAFSPDGKLL-ASGSS----LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             ccEEEEEECCCCCEE-EecCC----CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            346788999999855 44432    234556666667788889999999999999999998 556669999999999988


Q ss_pred             CeeEE-EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE-EEEE-ecCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIR-TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK-VYDI-CIQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~-~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~-~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      +.... .+.+|...+ ...|+|++.++++++.|+.+++|++..... +..+ .|...|.++.|+|++..+++++.|+.+.
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~  309 (466)
T COG2319         231 GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR  309 (466)
T ss_pred             CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEE
Confidence            87777 688888775 448999998899999999999999987665 4444 4778899999999888888888887744


Q ss_pred             EEeC
Q psy9319         161 KQDC  164 (432)
Q Consensus       161 vwd~  164 (432)
                      +||.
T Consensus       310 ~~~~  313 (466)
T COG2319         310 LWDL  313 (466)
T ss_pred             EEEc
Confidence            4444

>KOG1036|consensus

Probab=99.27  E-value=7.9e-11  Score=108.88  Aligned_cols=112  Identities=15%  Similarity=0.125  Sum_probs=100.3

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD  131 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~  131 (432)
                      ...|+++.|+|.+..|++++.||++++||+........+. |..++.+++|.++ ..+++|+.||.|+.+|+.+++....
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceee
Confidence            5679999999999999999999999999999776555555 9999999999974 5689999999999999999998887


Q ss_pred             EecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         132 ICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       132 ~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      -.|..+|.++.+++-...+++||.|++|.+||.+
T Consensus        91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             ccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            7899999999999988899999999998888876

>KOG0321|consensus

Probab=99.27  E-value=2.4e-11  Score=121.51  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=109.5

Q ss_pred             CCCcceeeeeeecCCCceeEEEEeecC-cceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEE--E
Q psy9319          14 PRPSLYQSSVLTDISPKQLDFKFKEHH-KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT--F   90 (432)
Q Consensus        14 p~~~~l~~s~s~D~~~~~~~i~~~d~~-~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~--~   90 (432)
                      |+...+++-+-.|+.+..++..-.... ....+.-...|...|..+.|-|....|++++.|.++++||+.++.++..  +
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~  140 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN  140 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee
Confidence            344455566666666655555432222 1122345567999999999999778899999999999999999888766  8


Q ss_pred             eeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCc--------------------EEEE----E----ecCCceEE-
Q psy9319          91 QRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGK--------------------KVYD----I----CIQAATFT-  140 (432)
Q Consensus        91 ~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~--------------------~~~~----~----~~~~~V~~-  140 (432)
                      .+|.+.|.+++|.| +...|++|+.||.|.|||++-..                    +...    +    .+...|.+ 
T Consensus       141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss  220 (720)
T KOG0321|consen  141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS  220 (720)
T ss_pred             cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence            89999999999999 66689999999999999986321                    0000    0    12233444 


Q ss_pred             --EEEccCCcEEEEEEC-CCeEEEEeCCc
Q psy9319         141 --VAWHPKQYLLAYACD-DKYDRKQDCGN  166 (432)
Q Consensus       141 --l~fspdg~~l~s~s~-d~~I~vwd~~~  166 (432)
                        +.+..|...||++|. |+.|+|||++.
T Consensus       221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  221 VTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             eEEEEEeccceeeeccCCCcceEEEeecc
Confidence              555578889999887 99966666543

>KOG2106|consensus

Probab=99.26  E-value=1.9e-10  Score=112.39  Aligned_cols=147  Identities=18%  Similarity=0.187  Sum_probs=117.7

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      ..++.+|+.+++ ++|+.|..+..|+       ..+++.+.. -..++.|+.|+|.| .++.|+..|...+.|..+...+
T Consensus       372 wgla~hps~~q~-~T~gqdk~v~lW~-------~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv  441 (626)
T KOG2106|consen  372 WGLATHPSKNQL-LTCGQDKHVRLWN-------DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV  441 (626)
T ss_pred             eeEEcCCChhhe-eeccCcceEEEcc-------CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeE
Confidence            567889999888 8888888765554       234443332 24678899999999 9999999999999999986655


Q ss_pred             EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-cEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          88 RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG-KKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        88 ~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~-~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ..-.. ..++++++|+|+|.+||.|+.|+.|++|-+..+ .......  +.++|..+.||+|++++.+.+.|-.|-+|..
T Consensus       442 ~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  442 TIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             EEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            44444 889999999999999999999999999998654 3333332  5688999999999999999999999888854


Q ss_pred             C
Q psy9319         165 G  165 (432)
Q Consensus       165 ~  165 (432)
                      +
T Consensus       521 ~  521 (626)
T KOG2106|consen  521 S  521 (626)
T ss_pred             c
Confidence            3

>KOG0322|consensus

Probab=99.26  E-value=1.9e-11  Score=110.68  Aligned_cols=147  Identities=12%  Similarity=0.087  Sum_probs=109.6

Q ss_pred             ceeeeeeecCCCceeEEEEeec-----CcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CeeE--E
Q psy9319          18 LYQSSVLTDISPKQLDFKFKEH-----HKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE--LTCI--R   88 (432)
Q Consensus        18 ~l~~s~s~D~~~~~~~i~~~d~-----~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~--~~~~--~   88 (432)
                      .+++++-.++.+-.|++..-+.     ...+.......|..+|.++.+.+.-..=++|+.+..+..|.+..  +.+.  .
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            3445555555555555442110     01144455667999999999988555557788888888898763  3321  1


Q ss_pred             EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          89 TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        89 ~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ...-....|..+..-||++.+||++.|+.|+||..++..++..+. |.+.|.+++|+|+..++|++|.|++|.+|++
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            122233568889999999999999999999999999999999998 8999999999999999999999999776664

>KOG2445|consensus

Probab=99.25  E-value=1.9e-10  Score=106.38  Aligned_cols=126  Identities=23%  Similarity=0.343  Sum_probs=102.3

Q ss_pred             ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCeeEEEEeeCCCCEEEEEEee--CCCEEEEEeCCCeEEEEe
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA----ELTCIRTFQRLDWPVRAISFSH--DGALIASGSEDLTIDIAH  122 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~----~~~~~~~~~~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd  122 (432)
                      .+|..-|.|+.|.+.|+.+++|+.|++|.|||..    +..+......|.+.|..+.|.+  -|+.+|++|.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            4788899999999999999999999999999964    3456778889999999999976  689999999999999997


Q ss_pred             CCC------CcE---EEEEe-cCCceEEEEEcc--CCcEEEEEECCCeEEEEeCC---ceEEeecCC
Q psy9319         123 VES------GKK---VYDIC-IQAATFTVAWHP--KQYLLAYACDDKYDRKQDCG---NLKVFGFLP  174 (432)
Q Consensus       123 ~~~------~~~---~~~~~-~~~~V~~l~fsp--dg~~l~s~s~d~~I~vwd~~---~i~vwd~~~  174 (432)
                      -..      +..   ..++. ..+.|+++.|.|  -|-.|++++.||.+|||+..   ++.-|.+..
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~  156 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH  156 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence            521      111   12222 667899999999  46789999999999999874   455676543

>KOG4378|consensus

Probab=99.24  E-value=9.3e-11  Score=114.32  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=124.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC-cCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP-VTCICIEFDPTGK-YFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~-~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~   83 (432)
                      -|.++.++-.+..+ ++++..     ++|.+..+.++.....+.... ..|.-+.|||..+ +|.+++++|.|.+||+..
T Consensus       123 tvt~v~YN~~Deyi-Asvs~g-----Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g  196 (673)
T KOG4378|consen  123 TVTYVDYNNTDEYI-ASVSDG-----GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG  196 (673)
T ss_pred             eeEEEEecCCccee-EEeccC-----CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence            35677777777765 555433     466666766777766676553 4456899999765 467889999999999998


Q ss_pred             CeeEEEE-eeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          84 LTCIRTF-QRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        84 ~~~~~~~-~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      ..+++.+ ..|..+...|+|+| +..+|++.+.|..|.+||+.+......+....+...++|+++|.+|+.|...|.|..
T Consensus       197 ~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~  276 (673)
T KOG4378|consen  197 MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIA  276 (673)
T ss_pred             CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEE
Confidence            7776655 46999999999999 556788999999999999998888888888999999999999999999999999999


Q ss_pred             EeCC
Q psy9319         162 QDCG  165 (432)
Q Consensus       162 wd~~  165 (432)
                      ||++
T Consensus       277 YD~R  280 (673)
T KOG4378|consen  277 YDMR  280 (673)
T ss_pred             Eecc
Confidence            9985

>KOG0642|consensus

Probab=99.24  E-value=2.7e-11  Score=119.81  Aligned_cols=121  Identities=20%  Similarity=0.226  Sum_probs=103.1

Q ss_pred             EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--------CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCe
Q psy9319          46 NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA--------ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT  117 (432)
Q Consensus        46 ~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~--------~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~  117 (432)
                      .++..|...|..++|.|....|++|+.||+|.+|++.        .-.++.+|.+|.++|.|+++++.+..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            3777899999999999999999999999999999993        13568899999999999999999999999999999


Q ss_pred             EEEEeCCC------Cc---E-EEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         118 IDIAHVES------GK---K-VYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       118 V~vwd~~~------~~---~-~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      |+.|++..      ..   . ...+ +|...|+.+++|+....|++++.||+++.|+...
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            99996532      11   1 1122 4888999999999999999999999988887644

>KOG2106|consensus

Probab=99.24  E-value=1.7e-10  Score=112.83  Aligned_cols=200  Identities=13%  Similarity=0.099  Sum_probs=140.1

Q ss_pred             CcccccccCCCCcceeeeeee---cCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-C-CCEEEEE--eCCCeEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLT---DISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-T-GKYFAVG--SKDALVS   77 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~---D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-d-g~~L~sg--s~dg~I~   77 (432)
                      ..|.|++++|+.-.+ +++-.   |+.-..-.+++||..+...++.+......|+|++||+ + |.+|...  +.+..+.
T Consensus       105 ddikc~~vHPdri~v-atGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lS  183 (626)
T KOG2106|consen  105 DDIKCMAVHPDRIRV-ATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLS  183 (626)
T ss_pred             CceEEEeecCCceee-ccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccc
Confidence            457999999988665 43332   2344556788999888999999988888999999999 3 4555443  3445688


Q ss_pred             EEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCcEEEE
Q psy9319          78 LWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-----IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        78 iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-----~~~~V~~l~fspdg~~l~s  152 (432)
                      +||...+............|....|+|.+.-++..+.-+-+.+|+++.+.......     ....|.|++|.++|. +++
T Consensus       184 VWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT  262 (626)
T KOG2106|consen  184 VWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT  262 (626)
T ss_pred             hhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe
Confidence            99998777666666667789999999955544445556789999999887766543     346699999999987 678


Q ss_pred             EECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      |..+|.        |.+|+..+....+....|.-+.+..+.            .   ....+|++.+|..|-+||-+
T Consensus       263 gDS~G~--------i~Iw~~~~~~~~k~~~aH~ggv~~L~~------------l---r~GtllSGgKDRki~~Wd~~  316 (626)
T KOG2106|consen  263 GDSGGN--------ILIWSKGTNRISKQVHAHDGGVFSLCM------------L---RDGTLLSGGKDRKIILWDDN  316 (626)
T ss_pred             ecCCce--------EEEEeCCCceEEeEeeecCCceEEEEE------------e---cCccEeecCccceEEecccc
Confidence            999999        555554444444443344322222111            1   11237889999999999843

>KOG1188|consensus

Probab=99.24  E-value=6.5e-11  Score=110.78  Aligned_cols=135  Identities=17%  Similarity=0.216  Sum_probs=107.0

Q ss_pred             ceeEEEEeecCcceeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCeeEE--EEeeCC-CCEEEEEEee
Q psy9319          30 KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSLWDAAELTCIR--TFQRLD-WPVRAISFSH  104 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd~~~~~~~~--~~~~h~-~~V~~i~~sp  104 (432)
                      ....++++|..+++.+..+.+|...++.++|..  .+..+.+|+.||+|++||+++.....  .+..+. .+..|++..-
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc  127 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC  127 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence            345677888889999999999999999999977  46789999999999999999755433  334454 4566777666


Q ss_pred             CCCEEEEEe----CCCeEEEEeCCCCcE-EEEEe--cCCceEEEEEccC-CcEEEEEECCCeEEEEeC
Q psy9319         105 DGALIASGS----EDLTIDIAHVESGKK-VYDIC--IQAATFTVAWHPK-QYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       105 dg~~l~sgs----~dg~V~vwd~~~~~~-~~~~~--~~~~V~~l~fspd-g~~l~s~s~d~~I~vwd~  164 (432)
                      .++.+++|.    .+-.|.+||++..+. +..+.  |...|+++.|+|. .+.|++||.||.|.+||+
T Consensus       128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            778888875    356799999998766 55553  8899999999995 589999999999666665

>KOG0307|consensus

Probab=99.23  E-value=1.4e-11  Score=130.55  Aligned_cols=166  Identities=16%  Similarity=0.185  Sum_probs=126.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE--ccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL--KAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l--~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~   81 (432)
                      ..|..+.|+|....++++|..|+.+-+||+.     ......++  ....+.|.|++|+. ..+.|++++.+|.+.|||+
T Consensus       117 G~V~gLDfN~~q~nlLASGa~~geI~iWDln-----n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl  191 (1049)
T KOG0307|consen  117 GPVLGLDFNPFQGNLLASGADDGEILIWDLN-----KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL  191 (1049)
T ss_pred             CceeeeeccccCCceeeccCCCCcEEEeccC-----CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence            3467799999998777999988877666665     32222222  12457799999998 4678899999999999999


Q ss_pred             CCCeeEEEEeeCCC--CEEEEEEeeCC-CEEEEEeCC---CeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCC-cEEEE
Q psy9319          82 AELTCIRTFQRLDW--PVRAISFSHDG-ALIASGSED---LTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQ-YLLAY  152 (432)
Q Consensus        82 ~~~~~~~~~~~h~~--~V~~i~~spdg-~~l~sgs~d---g~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg-~~l~s  152 (432)
                      +..+.+..+..|.+  .+..++|+|+. ..|++++.|   -.|.+||++.- .++..+. |..+|.++.|++.+ .+|++
T Consensus       192 r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS  271 (1049)
T KOG0307|consen  192 RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS  271 (1049)
T ss_pred             cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc
Confidence            98877777776654  47889999965 456666654   47999999854 4556664 89999999999966 89999


Q ss_pred             EECCCeEEEEeCCceEEeecCCCceeeeecC
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g  183 (432)
                      ++.|+.        +.+|+..+|+++..+..
T Consensus       272 sgkD~~--------ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  272 SGKDNR--------IICWNPNTGEVLGELPA  294 (1049)
T ss_pred             ccCCCC--------eeEecCCCceEeeecCC
Confidence            999999        77777777777666543

>KOG1009|consensus

Probab=99.22  E-value=7.5e-11  Score=112.56  Aligned_cols=126  Identities=15%  Similarity=0.279  Sum_probs=101.4

Q ss_pred             CcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCe---------eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q psy9319          52 PVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELT---------CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIA  121 (432)
Q Consensus        52 ~~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~---------~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vw  121 (432)
                      ..+|..+.|.+++. .|++|+.|..|+||-+..+.         ....+..|...|+++.|+|+|.+||+|+++|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            36789999998665 99999999999999876321         245667899999999999999999999999999999


Q ss_pred             eCC--------C-----Cc---EEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCC
Q psy9319         122 HVE--------S-----GK---KVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGG  184 (432)
Q Consensus       122 d~~--------~-----~~---~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~  184 (432)
                      -..        +     .+   ....+ .|...|+.++|+|++.++++++.|..        +.+||+..|...+.+.+|
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns--------~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS--------VRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce--------EEEEEeccceeEeecccc
Confidence            765        2     11   11112 27788999999999999999999999        777777777777777666


Q ss_pred             C
Q psy9319         185 T  185 (432)
Q Consensus       185 ~  185 (432)
                      .
T Consensus       165 ~  165 (434)
T KOG1009|consen  165 E  165 (434)
T ss_pred             c
Confidence            4

>KOG1310|consensus

Probab=99.22  E-value=1.6e-11  Score=120.85  Aligned_cols=156  Identities=19%  Similarity=0.206  Sum_probs=122.2

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE-ccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL-KAHPVTCICIEFDP--TGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l-~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd   80 (432)
                      ..||+|++|+.+|.++ +++|+|..+.+|     |....++++.+ +||...|.|+.|-|  +.+.+++|+.|..|++||
T Consensus        50 ~GCVN~LeWn~dG~lL-~SGSDD~r~ivW-----d~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   50 TGCVNCLEWNADGELL-ASGSDDTRLIVW-----DPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             cceecceeecCCCCEE-eecCCcceEEee-----cchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            3789999999999977 999998776555     44456676665 58999999999999  567899999999999999


Q ss_pred             CCC----------CeeEEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCc-------EEEEEe----cCCce
Q psy9319          81 AAE----------LTCIRTFQRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGK-------KVYDIC----IQAAT  138 (432)
Q Consensus        81 ~~~----------~~~~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~~-------~~~~~~----~~~~V  138 (432)
                      +..          ......+..|...|..++..|++ ..+.+++.||+++-+|++...       +...+.    .--..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            984          22345667899999999999987 789999999999999997532       111111    12345


Q ss_pred             EEEEEccCC-cEEEEEECCCeEEEEeCC
Q psy9319         139 FTVAWHPKQ-YLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       139 ~~l~fspdg-~~l~s~s~d~~I~vwd~~  165 (432)
                      .++..+|.. .+|++|+.|-..++||.+
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhh
Confidence            788999954 688999999998888843

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=2.4e-10  Score=116.56  Aligned_cols=161  Identities=12%  Similarity=0.048  Sum_probs=110.7

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC-
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS-KDALVSLWDAAEL-   84 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs-~dg~I~iwd~~~~-   84 (432)
                      .....|+|++..++.+.+.++..   +|.++|..++. ...+..+...+.+++|+|||+.|+.++ .++.+.||++... 
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~---~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVL---NIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcE---EEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            35688999999886665556554   45556665554 456777777888999999999877655 5678888876432 


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      .....+ .+.+  .++.|+|||++|++++.++ +.+||+.++........ ....++.|+|+|.+|++++.++.      
T Consensus       326 ~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~------  394 (429)
T PRK01742        326 GGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL------  394 (429)
T ss_pred             CCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC------
Confidence            222233 3443  4678999999999888765 56699998876543322 23467889999999999999888      


Q ss_pred             CceEEeec--CCCceeeeecCC
Q psy9319         165 GNLKVFGF--LPEPIKKRKRGG  184 (432)
Q Consensus       165 ~~i~vwd~--~~~~~~~~~~g~  184 (432)
                        ..+|.+  .+|..+..+.++
T Consensus       395 --~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        395 --GKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             --ceEEEEEECCCCceEEccCC
Confidence              444433  245566655544

>KOG0290|consensus

Probab=99.22  E-value=1.4e-10  Score=106.53  Aligned_cols=164  Identities=13%  Similarity=0.135  Sum_probs=122.7

Q ss_pred             cCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee---EEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCC
Q psy9319          50 AHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELTC---IRTFQRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVE  124 (432)
Q Consensus        50 ~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~  124 (432)
                      .+..+++++.|+. +.++|.++|-|.++.|||+.++..   -..+..|...|+.++|...+ ..+|+.+.||.|++||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3568999999998 789999999999999999998633   56677899999999999854 488999999999999999


Q ss_pred             CCcEEEEE---ec-CCceEEEEEccC-CcEEEEEECCCeEEEEeCCceEEeecC-CCceeeeecCCCchhhhHHhhhccc
Q psy9319         125 SGKKVYDI---CI-QAATFTVAWHPK-QYLLAYACDDKYDRKQDCGNLKVFGFL-PEPIKKRKRGGTMSSWVKAAKVNQK  198 (432)
Q Consensus       125 ~~~~~~~~---~~-~~~V~~l~fspd-g~~l~s~s~d~~I~vwd~~~i~vwd~~-~~~~~~~~~g~~mss~~~a~~~~~~  198 (432)
                      .-..-..+   .. ..+...++|++. -+++|+-..|+.       .|.+.|++ .+..+..+.+|..+.-..       
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~-------~V~iLDiR~P~tpva~L~~H~a~VNgI-------  293 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN-------KVVILDIRVPCTPVARLRNHQASVNGI-------  293 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc-------eEEEEEecCCCcceehhhcCcccccce-------
Confidence            86654443   22 456788999984 477777666553       47777777 345677788876543211       


Q ss_pred             ccccccCccccccccceeccCcceeecccchhHHH
Q psy9319         199 THRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKK  233 (432)
Q Consensus       199 ~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~  233 (432)
                        .|.  |.+.  .-+++++.|++.-+||.+..-.
T Consensus       294 --aWa--PhS~--~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  294 --AWA--PHSS--SHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             --Eec--CCCC--ceeeecCCcceEEEEecccccc
Confidence              122  2222  2379999999999999987543

>KOG0650|consensus

Probab=99.21  E-value=2.6e-11  Score=120.46  Aligned_cols=151  Identities=21%  Similarity=0.249  Sum_probs=123.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~-   83 (432)
                      ..|+++.|+|....++++       ..-.++++|......+..+......|..++.+|.|..|+.|+.|+.++.||+.- 
T Consensus       567 G~vq~v~FHPs~p~lfVa-------Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVA-------TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             CceeEEEecCCCceEEEE-------eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence            457899999999888666       334567778777777888877888999999999999999999999999999984 


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe------CCCCcE---EEEEe-cC----CceEEEEEccCCcE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH------VESGKK---VYDIC-IQ----AATFTVAWHPKQYL  149 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd------~~~~~~---~~~~~-~~----~~V~~l~fspdg~~  149 (432)
                      .++..++.-|...|++++|++.-.++++|+.||++.|+-      +.....   +..+. |.    ..|..+.|||...+
T Consensus       640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW  719 (733)
T ss_pred             cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence            356778888999999999999999999999999999884      222222   22332 33    44889999999999


Q ss_pred             EEEEECCCeEEEE
Q psy9319         150 LAYACDDKYDRKQ  162 (432)
Q Consensus       150 l~s~s~d~~I~vw  162 (432)
                      |++++.||+|++|
T Consensus       720 LfsAGAd~tirlf  732 (733)
T KOG0650|consen  720 LFSAGADGTIRLF  732 (733)
T ss_pred             EEecCCCceEEee
Confidence            9999999996666

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.21  E-value=7.1e-10  Score=108.84  Aligned_cols=147  Identities=28%  Similarity=0.368  Sum_probs=116.5

Q ss_pred             CCCCcceeeeeee-cCCCceeEEEEeecCc-ceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCeeEEE
Q psy9319          13 NPRPSLYQSSVLT-DISPKQLDFKFKEHHK-LEEQNILKAHPVTCICIEFDPTGKYFAVGSK-DALVSLWDAAELTCIRT   89 (432)
Q Consensus        13 ~p~~~~l~~s~s~-D~~~~~~~i~~~d~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~iwd~~~~~~~~~   89 (432)
                      ++++..++..++. |+.     +.+|+... ......+.+|...|.+++|+|++..+++++. |+.+++|++..+..+..
T Consensus       119 ~~~~~~~~~~~~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (466)
T COG2319         119 SPDGNSILLASSSLDGT-----VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST  193 (466)
T ss_pred             CCCcceEEeccCCCCcc-----EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence            5666633233333 554     45555555 6788889999999999999999998888885 99999999998888899


Q ss_pred             EeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCcEEE-EEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319          90 FQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVESGKKVY-DIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus        90 ~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~~~~~~-~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +.+|...|.+++|+|++. .+++++.|+.|.+||...+..+. .+. |...+ ...|+|++.++++++.|+.+++|++.
T Consensus       194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            999999999999999998 55565899999999998887777 344 55554 33899999889999999996666554

>KOG1272|consensus

Probab=99.21  E-value=2.2e-11  Score=117.90  Aligned_cols=149  Identities=13%  Similarity=0.150  Sum_probs=124.1

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |..+.|-|.+-++ ++++..     +-+.+.|+++|+.+..+....+.+..++-+|-...+-.|...|+|.+|......+
T Consensus       212 v~rLeFLPyHfLL-~~~~~~-----G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  212 VARLEFLPYHFLL-VAASEA-----GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hhhhcccchhhee-eecccC-----CceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            4677888888665 555433     3456678889999999998899999999999888999999999999999999888


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      +..+.+|.++|.++++.++|.|++|.+.|..|+|||++.-..+.++..+.+...++||..|. || ++....        
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA-~~~G~~--------  355 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LA-LSYGDH--------  355 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccc-ee-eecCCe--------
Confidence            88888999999999999999999999999999999999988777776677788899987663 33 334444        


Q ss_pred             eEEee
Q psy9319         167 LKVFG  171 (432)
Q Consensus       167 i~vwd  171 (432)
                      +.+|.
T Consensus       356 v~iw~  360 (545)
T KOG1272|consen  356 VQIWK  360 (545)
T ss_pred             eeeeh
Confidence            66774

>KOG0644|consensus

Probab=99.21  E-value=3.3e-12  Score=130.92  Aligned_cols=148  Identities=14%  Similarity=0.119  Sum_probs=114.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      |.|.|..|...|..+ +++++|.-+     .+|...++.++..+.||.+.|+.++.+.+..+++++|.|..|++|.+..+
T Consensus       191 naVyca~fDrtg~~I-itgsdd~lv-----KiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  191 NAVYCAIFDRTGRYI-ITGSDDRLV-----KIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             hheeeeeeccccceE-eecCcccee-----eeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            567888888888766 888888755     55566789999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEE-----EEecCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY-----DICIQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~-----~~~~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .++..+.+|++.|++++|+|-.    +.+.||++++||.+-...+.     .+....-+.++.|..++..++|++.|+.-
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea  340 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA  340 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence            9999999999999999999954    67889999999987111111     01122334555555556666666666554


Q ss_pred             EEE
Q psy9319         160 RKQ  162 (432)
Q Consensus       160 ~vw  162 (432)
                      +.|
T Consensus       341 ~n~  343 (1113)
T KOG0644|consen  341 RNH  343 (1113)
T ss_pred             ccc
Confidence            444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.20  E-value=4.1e-10  Score=102.05  Aligned_cols=117  Identities=15%  Similarity=0.255  Sum_probs=88.2

Q ss_pred             CcccccccCCCCcceeee-eeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC---CeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSS-VLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD---ALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s-~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d---g~I~iwd   80 (432)
                      ..|.+++|+|++..+++. +..+.     .+.+||.. ++.+..+.  ...+..+.|||+|++|++|+.+   |.|.+||
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~-----~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPA-----KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCc-----ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence            358999999999987444 32333     45556653 56666654  5678899999999999988643   6799999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC------CCeEEEEeCCCCcEEEEE
Q psy9319          81 AAELTCIRTFQRLDWPVRAISFSHDGALIASGSE------DLTIDIAHVESGKKVYDI  132 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~------dg~V~vwd~~~~~~~~~~  132 (432)
                      ..+.+.+..+. |. .++.++|||||++|++++.      |+.++||++ +|..+...
T Consensus       132 ~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  132 VRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             CCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            99888877665 43 4789999999999998864      678999998 46655543

>KOG1539|consensus

Probab=99.20  E-value=4.6e-10  Score=115.56  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=114.5

Q ss_pred             eeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCC-EE
Q psy9319          31 QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA-LI  109 (432)
Q Consensus        31 ~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~-~l  109 (432)
                      .+.+.+|++.+++.+++++++...|+++.-+|--..++.|..+|+|.|+++..++.+.+|....+.|++++|.-||. .+
T Consensus       181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~l  260 (910)
T KOG1539|consen  181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLL  260 (910)
T ss_pred             CCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeE
Confidence            34556677779999999999999999999999888999999999999999999999999984459999999999998 46


Q ss_pred             EEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319         110 ASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus       110 ~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      ++|+..|.+.+||++....+..+.  |.+.|..+.|-|....+++++.|..++
T Consensus       261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk  313 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK  313 (910)
T ss_pred             EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence            677778999999999888777665  788999999999999999999998833

>KOG0771|consensus

Probab=99.18  E-value=1.1e-10  Score=111.92  Aligned_cols=116  Identities=20%  Similarity=0.261  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE---
Q psy9319          56 ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI---  132 (432)
Q Consensus        56 ~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~---  132 (432)
                      .+++|+++|..+++|+.||+++||+......+.....|...|.++.|||||.+|++.+.| ...||+..+|.++...   
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            588999999999999999999999987777777778899999999999999999999999 8999999887221110   


Q ss_pred             -------------------------------------e--c-------------CCceEEEEEccCCcEEEEEECCCeEE
Q psy9319         133 -------------------------------------C--I-------------QAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus       133 -------------------------------------~--~-------------~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                                                           .  +             ...|.+++.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                                 0  0             22578899999999999999999977


Q ss_pred             EEeCCceEEeec
Q psy9319         161 KQDCGNLKVFGF  172 (432)
Q Consensus       161 vwd~~~i~vwd~  172 (432)
                      |++...++...+
T Consensus       307 i~~~~~lq~~~~  318 (398)
T KOG0771|consen  307 IYDAKSLQRLQY  318 (398)
T ss_pred             EEEeceeeeeEe
Confidence            777766555443

>KOG1188|consensus

Probab=99.18  E-value=2.6e-10  Score=106.76  Aligned_cols=152  Identities=16%  Similarity=0.239  Sum_probs=114.8

Q ss_pred             CcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC-cCEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCee-EEE
Q psy9319          16 PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP-VTCICIEFDPTGKYFAVGSK----DALVSLWDAAELTC-IRT   89 (432)
Q Consensus        16 ~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~sgs~----dg~I~iwd~~~~~~-~~~   89 (432)
                      ....+.+|+.|++++.|+++...   ........+|. .+..|++.+..++.+++|+.    +-.|.+||++..+. +..
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~---e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~  159 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQA---ESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ  159 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecch---hhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence            44456889999999999988542   23344455565 56778887777888888753    56799999997655 443


Q ss_pred             E-eeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCc----EEEEEecCCceEEEEEccCC-cEEEEEECCCeEEEE
Q psy9319          90 F-QRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGK----KVYDICIQAATFTVAWHPKQ-YLLAYACDDKYDRKQ  162 (432)
Q Consensus        90 ~-~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~----~~~~~~~~~~V~~l~fspdg-~~l~s~s~d~~I~vw  162 (432)
                      + ..|...|+++.|+| +.++|+|||.||-|.++|+....    .+..+.+.+.|.++.|+.++ +.|.+-+...+    
T Consensus       160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et----  235 (376)
T KOG1188|consen  160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET----  235 (376)
T ss_pred             hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc----
Confidence            3 46999999999999 77899999999999999997543    34455688889999999877 45666777777    


Q ss_pred             eCCceEEeecCCCcee
Q psy9319         163 DCGNLKVFGFLPEPIK  178 (432)
Q Consensus       163 d~~~i~vwd~~~~~~~  178 (432)
                          +.+|++..+...
T Consensus       236 ----f~~~ele~~~~~  247 (376)
T KOG1188|consen  236 ----FAIYELEDGSEE  247 (376)
T ss_pred             ----eeEEEccCCChh
Confidence                788888776543

>KOG1272|consensus

Probab=99.16  E-value=2.2e-11  Score=117.82  Aligned_cols=133  Identities=16%  Similarity=0.143  Sum_probs=116.7

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs  113 (432)
                      ++++|- .|..++++..| ..|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-...+-+|.
T Consensus       193 ~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh  270 (545)
T KOG1272|consen  193 VYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH  270 (545)
T ss_pred             EEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence            345553 67888888887 5688999999888899999999999999999999999988888999999999888999999


Q ss_pred             CCCeEEEEeCCCCcEEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceE
Q psy9319         114 EDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLK  168 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~  168 (432)
                      .+|+|.+|...+.+++..+ +|.++|.+++++|+|.+++|++.|..+.|||++..+
T Consensus       271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            9999999999988887655 599999999999999999999999997777776544

>KOG2111|consensus

Probab=99.16  E-value=1.2e-09  Score=101.52  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=97.8

Q ss_pred             EEEEeecC-cceeeEEEccCCcCEEEEEEcC--CCCEEEE-EeCCCeEEEEeCCCCee--EEEEeeCCCCEEEEEEeeCC
Q psy9319          33 DFKFKEHH-KLEEQNILKAHPVTCICIEFDP--TGKYFAV-GSKDALVSLWDAAELTC--IRTFQRLDWPVRAISFSHDG  106 (432)
Q Consensus        33 ~i~~~d~~-~~~~~~~l~~h~~~V~~l~~sp--dg~~L~s-gs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~i~~spdg  106 (432)
                      .|.+|... +.+.++.+..-..|=--++.+|  +..+||. |-.-|.|+|-|+..-..  ...+..|.+.|.|++.+-+|
T Consensus       114 ~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G  193 (346)
T KOG2111|consen  114 KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG  193 (346)
T ss_pred             eEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc
Confidence            44555544 4455665554322211233445  3344443 45568999999975443  47788999999999999999


Q ss_pred             CEEEEEeCCCe-EEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         107 ALIASGSEDLT-IDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       107 ~~l~sgs~dg~-V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ..+||+|..|+ |+|||..+|+.+..+.   ....|++++|||++.+|+++|.-|+++|+.
T Consensus       194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            99999999887 7899999999999986   556799999999999999999999944443

>KOG0644|consensus

Probab=99.15  E-value=1.4e-11  Score=126.42  Aligned_cols=119  Identities=25%  Similarity=0.423  Sum_probs=110.4

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      +.+..|.||...|+|+.|...|.++++|++|..|+||...++.++....||.+.|+.++.+....+++++|.|..|++|-
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            33455779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         123 VESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       123 ~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +.++.++..+. |.+.|++++|+|-.    +++.||++++||.+
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            99999998886 99999999999954    67899999999987

>KOG4227|consensus

Probab=99.14  E-value=2.6e-10  Score=108.36  Aligned_cols=121  Identities=16%  Similarity=0.228  Sum_probs=106.2

Q ss_pred             eEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC------CCeeEEEEe-eCCCCEEEEEEeeCCCEEEEEeCCCe
Q psy9319          45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA------ELTCIRTFQ-RLDWPVRAISFSHDGALIASGSEDLT  117 (432)
Q Consensus        45 ~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~------~~~~~~~~~-~h~~~V~~i~~spdg~~l~sgs~dg~  117 (432)
                      ...+.+|.+.|.++.||.++++|++|+.|..+++|++.      +.+++.... .|...|.|++|.....++++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            34567899999999999999999999999999999975      334555544 35588999999999999999999999


Q ss_pred             EEEEeCCCCcEEEEEecCC---ceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         118 IDIAHVESGKKVYDICIQA---ATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       118 V~vwd~~~~~~~~~~~~~~---~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      |...|+.+.+.+..+.+..   .|+.+..+|..+.+++.+.++.|.+||.+
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            9999999999999887544   89999999999999999999999999974

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=4.6e-09  Score=107.28  Aligned_cols=164  Identities=12%  Similarity=0.023  Sum_probs=109.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCC--eEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDA--LVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg--~I~iwd~   81 (432)
                      +.+....|+|++..++. ++.+.  ....+.+|+..++... .+..+.+...+++|+|||+.|+ +.+.+|  .|++||+
T Consensus       204 ~~v~~p~wSpDg~~la~-~s~~~--~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        204 EPILSPAWSPDGKKLAY-VSFER--GRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             CccccccCCCCCCEEEE-EecCC--CCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            45677889999987743 33332  2345777887776543 3444455566889999998775 445555  5999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-CC--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSE-DL--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-dg--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .++.. ..+..+......++|+|||+.|+.++. +|  .|+++|+.++..............++|+|+|..|+..+.++.
T Consensus       280 ~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~  358 (433)
T PRK04922        280 GSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG  358 (433)
T ss_pred             CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC
Confidence            88764 445556556678899999999887764 34  477778877764433323344557899999999988765431


Q ss_pred             EEEEeCCceEEeecCCCcee
Q psy9319         159 DRKQDCGNLKVFGFLPEPIK  178 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~  178 (432)
                           ...|.+|++.++...
T Consensus       359 -----~~~I~v~d~~~g~~~  373 (433)
T PRK04922        359 -----QYRIAVMDLSTGSVR  373 (433)
T ss_pred             -----ceeEEEEECCCCCeE
Confidence                 012666777666543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=5e-09  Score=107.09  Aligned_cols=147  Identities=13%  Similarity=0.114  Sum_probs=105.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCe--EEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDAL--VSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~--I~iwd~   81 (432)
                      ..+....|+|++..++. .+...  ....+.+||..++.. ..+..+.+.+.+.+|||||+.|+ +.+.++.  |.+||+
T Consensus       202 ~~v~~p~wSpDG~~lay-~s~~~--g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        202 SLVLTPRFSPNRQEITY-MSYAN--GRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             CCeEeeEECCCCCEEEE-EEecC--CCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            45677889999987733 33322  125778888877755 35566677788999999998775 5555554  777898


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-C--CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSE-D--LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-d--g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      .++.. ..+..+.....+..|+|||+.|+.++. +  ..|++||+.++...........+..+.|+|+|..|+..+.+
T Consensus       278 ~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~  354 (435)
T PRK05137        278 RSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQG  354 (435)
T ss_pred             CCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence            87764 456666666778999999999887764 3  36889998776654433345567778999999999887654

>KOG4227|consensus

Probab=99.12  E-value=5e-10  Score=106.43  Aligned_cols=161  Identities=11%  Similarity=0.093  Sum_probs=125.1

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeec-CcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH-HKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~-~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ..||+++.|+.++..+ +++.+|..+..|.+...-+ .+.+++.... .|...|.|++|.....++++|..+++|.+-|+
T Consensus        56 ~GCiNAlqFS~N~~~L-~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi  134 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFL-ASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI  134 (609)
T ss_pred             ccccceeeeccCCeEE-eecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence            4799999999997655 9999998877776542111 1234555443 35588999999999999999999999999999


Q ss_pred             CCCeeEEEEee--CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc-EEEEE---ecCCceEEEEEccCC-cEEEEEE
Q psy9319          82 AELTCIRTFQR--LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK-KVYDI---CIQAATFTVAWHPKQ-YLLAYAC  154 (432)
Q Consensus        82 ~~~~~~~~~~~--h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~-~~~~~---~~~~~V~~l~fspdg-~~l~s~s  154 (432)
                      .+.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||.+..+ +...+   ..+....++.|+|.. .+|++.+
T Consensus       135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~  214 (609)
T KOG4227|consen  135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS  214 (609)
T ss_pred             ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence            99887777652  23589999999988999999999999999998654 22222   256668889999965 6777888


Q ss_pred             CCCeEEEEeCC
Q psy9319         155 DDKYDRKQDCG  165 (432)
Q Consensus       155 ~d~~I~vwd~~  165 (432)
                      ..+-+.+||.+
T Consensus       215 ~~~G~~~~D~R  225 (609)
T KOG4227|consen  215 ETGGPNVFDRR  225 (609)
T ss_pred             ccCCCCceeec
Confidence            88888888864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=5.8e-09  Score=106.32  Aligned_cols=165  Identities=12%  Similarity=0.030  Sum_probs=111.1

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-A--LVSLWDAAE   83 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-g--~I~iwd~~~   83 (432)
                      +....|+|++..++.+.+.++.   +++.+||..++... .+..+...+....|+|||+.|+.++.+ +  .|.++|+.+
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~---~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGS---LNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCC---cEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence            4567899999988665444433   45777888776554 444455667889999999998877754 3  455557776


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      +.. ..+..+...+.+..|+|||++|+..+.+   ..|.+||+.++... .+..........|+|||..|++++.++...
T Consensus       321 g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~  398 (429)
T PRK03629        321 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGS  398 (429)
T ss_pred             CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCce
Confidence            644 3444444556788999999999876643   45889999888644 333333345788999999999998876521


Q ss_pred             EEeCCceEEeecCCCceeeeecC
Q psy9319         161 KQDCGNLKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       161 vwd~~~i~vwd~~~~~~~~~~~g  183 (432)
                           .+.++++. |.....+.+
T Consensus       399 -----~l~~~~~~-G~~~~~l~~  415 (429)
T PRK03629        399 -----VLNLVSTD-GRFKARLPA  415 (429)
T ss_pred             -----EEEEEECC-CCCeEECcc
Confidence                 14555654 343444433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=5.8e-09  Score=106.31  Aligned_cols=163  Identities=9%  Similarity=-0.005  Sum_probs=107.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-eCCC--eEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-SKDA--LVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s~dg--~I~iwd~   81 (432)
                      ..+....|+|++..++.+ +....  .-.+.+++..+++.. .+....+.+.+++|||||+.|+.. +.+|  .|.+||+
T Consensus       199 ~~~~~p~wSPDG~~la~~-s~~~g--~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYV-TFESG--RSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             CceeeeEEcCCCCEEEEE-EecCC--CcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            356788999999887443 33211  235667777766433 222333345578999999988765 4444  5889999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-C--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSED-L--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-g--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .++... .+..+...+....|+|||+.|+.++.+ +  .|+++|+.++...........+....|+|||.+|+..+.++.
T Consensus       275 ~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g  353 (429)
T PRK03629        275 ASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG  353 (429)
T ss_pred             CCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCC
Confidence            887654 444455567889999999998877754 3  466668777755433334445667899999999988765432


Q ss_pred             EEEEeCCceEEeecCCCce
Q psy9319         159 DRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~  177 (432)
                           ...+.+||+.++..
T Consensus       354 -----~~~I~~~dl~~g~~  367 (429)
T PRK03629        354 -----QQHIAKQDLATGGV  367 (429)
T ss_pred             -----CceEEEEECCCCCe
Confidence                 12366677776654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=3.2e-09  Score=108.25  Aligned_cols=127  Identities=15%  Similarity=0.137  Sum_probs=92.3

Q ss_pred             ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCC
Q psy9319          30 KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD---ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG  106 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg  106 (432)
                      ..+.+.+||.. +.....+..|...+.+++|||||+.|+.++.+   ..|++||+.++.... +....+...+++|+|||
T Consensus       182 ~~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG  259 (429)
T PRK01742        182 QPYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDG  259 (429)
T ss_pred             ceEEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCC
Confidence            35788888875 44466788888899999999999999887654   369999998875422 22222334578999999


Q ss_pred             CEEEEEe-CCCe--EEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE-CCCe
Q psy9319         107 ALIASGS-EDLT--IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC-DDKY  158 (432)
Q Consensus       107 ~~l~sgs-~dg~--V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~  158 (432)
                      +.|+.++ .+|.  |++||+.++.......+...+.++.|+|||..|++++ .++.
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~  315 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS  315 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC
Confidence            9888765 5775  4555777776544444666688899999999877665 4566

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=4.5e-09  Score=107.09  Aligned_cols=163  Identities=15%  Similarity=0.072  Sum_probs=105.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEE--eC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLW--DA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iw--d~   81 (432)
                      ..+....|+|++..++.+ +.+.  ....+.+||..+++.. .+....+.+.+.+|||||+.|+ +.+.++...||  |+
T Consensus       196 ~~v~~p~wSPDG~~la~~-s~~~--~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        196 EPIISPAWSPDGTKLAYV-SFES--KKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             CCcccceEcCCCCEEEEE-EccC--CCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            345678899999877443 3321  2246788888777654 3444445667899999998886 45677775655  45


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-CCeEEEE--eCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSE-DLTIDIA--HVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-dg~V~vw--d~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .++. ...+..+.+.+.+..|+|||+.|+..+. ++...+|  ++.++...............+|+|+|++|+.++.++.
T Consensus       272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g  350 (427)
T PRK02889        272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG  350 (427)
T ss_pred             CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence            4443 4555556666678899999998887664 3444555  5555543332223333456899999999988776542


Q ss_pred             EEEEeCCceEEeecCCCce
Q psy9319         159 DRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~  177 (432)
                      -     ..|.+|++.++..
T Consensus       351 ~-----~~I~v~d~~~g~~  364 (427)
T PRK02889        351 A-----FKLYVQDLATGQV  364 (427)
T ss_pred             c-----EEEEEEECCCCCe
Confidence            0     1266777766654

>KOG1523|consensus

Probab=99.08  E-value=5.2e-10  Score=104.03  Aligned_cols=156  Identities=16%  Similarity=0.193  Sum_probs=122.2

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|..+.|+|..+.+ ++|+.|+.-..|...  +-.+.++...|.-+...++|+.|+|.++.|++||.-..|.||-++...
T Consensus        57 ~vtgvdWap~snrI-vtcs~drnayVw~~~--~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN  133 (361)
T KOG1523|consen   57 IVTGVDWAPKSNRI-VTCSHDRNAYVWTQP--SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN  133 (361)
T ss_pred             ceeEEeecCCCCce-eEccCCCCccccccC--CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc
Confidence            46789999999888 999999887766653  223446777888899999999999999999999999999998776322


Q ss_pred             ----eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC-----C-------------CcEEEEE-ecCCceEEEE
Q psy9319          86 ----CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVE-----S-------------GKKVYDI-CIQAATFTVA  142 (432)
Q Consensus        86 ----~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~-----~-------------~~~~~~~-~~~~~V~~l~  142 (432)
                          .-+.-..+.+.|.+++|+|++-+|++||.|+.++|+..-     .             |+.+..+ ...+.|..+.
T Consensus       134 dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~  213 (361)
T KOG1523|consen  134 DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL  213 (361)
T ss_pred             ceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence                122334567889999999999999999999999998641     1             2223333 3567799999


Q ss_pred             EccCCcEEEEEECCCeEEEEeC
Q psy9319         143 WHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       143 fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      |+|+|..|+..+.|.++.+-|.
T Consensus       214 fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  214 FSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             eCCCCCEeeEecCCCceEEeec
Confidence            9999999999999999655553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.07  E-value=6.9e-09  Score=101.95  Aligned_cols=153  Identities=10%  Similarity=0.006  Sum_probs=100.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecC-cce--eeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH-KLE--EQNILKAHPVTCICIEFDPTGKYFAVGSK-DALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~-~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~iwd   80 (432)
                      +....+.++|++..+++++..+..+.     .|+.. ++.  ...... ..+....++|+|+|++|++++. ++.|.+|+
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~-----~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~  108 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVL-----SYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSP  108 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEE-----EEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence            34567889999988766654444443     33332 232  222222 2335678999999998887764 78999999


Q ss_pred             CCC-Ce---eEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEE-------EEecCCceEEEEEccCCc
Q psy9319          81 AAE-LT---CIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVY-------DICIQAATFTVAWHPKQY  148 (432)
Q Consensus        81 ~~~-~~---~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~-------~~~~~~~V~~l~fspdg~  148 (432)
                      +.+ +.   .+..+. +.....+++++|+|+++++++ .++.|.+||+.+...+.       ..........++|+|+|+
T Consensus       109 ~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~  187 (330)
T PRK11028        109 LDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ  187 (330)
T ss_pred             ECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC
Confidence            863 32   222232 334567889999999886655 67999999997633221       122344567899999999


Q ss_pred             EEEEEEC-CCeEEEEeC
Q psy9319         149 LLAYACD-DKYDRKQDC  164 (432)
Q Consensus       149 ~l~s~s~-d~~I~vwd~  164 (432)
                      +++++.. ++.|.+|++
T Consensus       188 ~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        188 YAYCVNELNSSVDVWQL  204 (330)
T ss_pred             EEEEEecCCCEEEEEEE
Confidence            9988876 788555544

>KOG1963|consensus

Probab=99.05  E-value=4.2e-09  Score=109.31  Aligned_cols=115  Identities=21%  Similarity=0.371  Sum_probs=99.8

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE----LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~----~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~  125 (432)
                      .|...++|.++||+++++++|..||.|.+|.-..    ....+.+.-|...|.+++|+++|.+|++|+..|.+-+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777799999999999999999999999996432    123567788999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         126 GKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       126 ~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +.....-...++|..+.++||+...+....|+.|.+...
T Consensus       283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            984443448899999999999999999999999777654

>KOG2139|consensus

Probab=99.05  E-value=4.2e-09  Score=99.53  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=105.8

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecC-------cce--eeEEEccCCcCEEEEEEcCCCCEEEEEeC-
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH-------KLE--EQNILKAHPVTCICIEFDPTGKYFAVGSK-   72 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~-------~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~-   72 (432)
                      .+..|.|++|.|.+..-++.+.. ..+-+|....--..       +..  .+....|| .+|++++|++||..+++++. 
T Consensus       139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            34567899999976544333222 12223332210000       001  12233455 78999999999999988875 


Q ss_pred             CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC-CCCcEEEEEecCCceEEEEEccCCcEEE
Q psy9319          73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV-ESGKKVYDICIQAATFTVAWHPKQYLLA  151 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~-~~~~~~~~~~~~~~V~~l~fspdg~~l~  151 (432)
                      |..|.|||.+++..+-...-..+.++-+.|||||.+|..+..|+..++|.. ++..+..-....+.|...+|+|+|++|+
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence            568999999998876555445677899999999999999999999999954 4445555555667899999999998877


Q ss_pred             EEECCC
Q psy9319         152 YACDDK  157 (432)
Q Consensus       152 s~s~d~  157 (432)
                      .++...
T Consensus       297 f~~sgs  302 (445)
T KOG2139|consen  297 FACSGS  302 (445)
T ss_pred             EEEcCC
Confidence            766543

>KOG0974|consensus

Probab=99.05  E-value=1.2e-09  Score=115.02  Aligned_cols=115  Identities=21%  Similarity=0.148  Sum_probs=100.1

Q ss_pred             EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEE-EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q psy9319          47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIR-TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        47 ~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~  125 (432)
                      .+.||.+.+.++.|+-||+++++.|+|.++++|++.+++... +..+|+..|+.+.|.|.  .++|++.|.++++|+.. 
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-  246 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-  246 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-
Confidence            689999999999999999999999999999999999887655 66789999999999998  89999999999999764 


Q ss_pred             CcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         126 GKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       126 ~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +..+..+.  ....+..++.+++...++|++.|+.+++||+
T Consensus       247 ~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  247 GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            44444554  3456999999999999999999999666654

>KOG2111|consensus

Probab=99.05  E-value=1.9e-08  Score=93.70  Aligned_cols=96  Identities=19%  Similarity=0.322  Sum_probs=82.2

Q ss_pred             ceeEEEEeecCccee--eEEEccCCcCEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCeeEEEEeeC--CCCEEEEEEee
Q psy9319          30 KQLDFKFKEHHKLEE--QNILKAHPVTCICIEFDPTGKYFAVGSKDAL-VSLWDAAELTCIRTFQRL--DWPVRAISFSH  104 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~-I~iwd~~~~~~~~~~~~h--~~~V~~i~~sp  104 (432)
                      +.+.+++-|....+.  ...+.+|...|.|++.+.+|..+|++|..|+ |+|||..+|..+..+...  ...|++++|||
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp  236 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP  236 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence            346666666554443  4788999999999999999999999999997 789999999999988743  35699999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q psy9319         105 DGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus       105 dg~~l~sgs~dg~V~vwd~~~  125 (432)
                      ++.+||.+|+-|+|.|+.++.
T Consensus       237 ~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  237 NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CccEEEEEcCCCeEEEEEeec
Confidence            999999999999999998865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.04  E-value=8e-09  Score=101.53  Aligned_cols=153  Identities=10%  Similarity=0.067  Sum_probs=100.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCc-ceee------EEEccCCcCEEEEEEcCCCCEEEEEeC-CCeE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK-LEEQ------NILKAHPVTCICIEFDPTGKYFAVGSK-DALV   76 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~-~~~~------~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I   76 (432)
                      .....+.++|++..+++++..+..+..|++     .+ +...      ..+... .....++|+|+|+++++++. +++|
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~-----~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v  199 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTL-----SDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSV  199 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEE-----CCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEE
Confidence            344667899999888777766665555544     33 2211      112222 33567899999999988876 8999


Q ss_pred             EEEeCCC--Ce--eEEEEeeC------CCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCc-EE---EEEecCCceEEE
Q psy9319          77 SLWDAAE--LT--CIRTFQRL------DWPVRAISFSHDGALIASGS-EDLTIDIAHVESGK-KV---YDICIQAATFTV  141 (432)
Q Consensus        77 ~iwd~~~--~~--~~~~~~~h------~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~-~~---~~~~~~~~V~~l  141 (432)
                      .+|++..  +.  .+..+..+      ......+.++|++++++++. .++.|.+|++.... .+   ..+........+
T Consensus       200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~  279 (330)
T PRK11028        200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF  279 (330)
T ss_pred             EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce
Confidence            9999973  32  23333321      12234688999999999886 47899999986543 22   222223345679


Q ss_pred             EEccCCcEEEEEEC-CCeEEEEe
Q psy9319         142 AWHPKQYLLAYACD-DKYDRKQD  163 (432)
Q Consensus       142 ~fspdg~~l~s~s~-d~~I~vwd  163 (432)
                      .|+|+|++|++++. +++|.+|+
T Consensus       280 ~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        280 NIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EECCCCCEEEEEEccCCcEEEEE
Confidence            99999999998775 77744443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.4e-08  Score=103.76  Aligned_cols=143  Identities=14%  Similarity=0.060  Sum_probs=102.1

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-DAL--VSLWDAAEL   84 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~--I~iwd~~~~   84 (432)
                      ....|+|++..++.+.+.++.   .++.+|+..++.. ..+..+......++|+|||+.|+.++. +|.  |.++|+.++
T Consensus       251 ~~~~~SpDG~~l~~~~s~~g~---~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        251 GAPSFSPDGRRLALTLSRDGN---PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             cCceECCCCCEEEEEEeCCCC---ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            467899999988666665553   4677888877654 456666666678899999998887764 344  777777766


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC---eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDL---TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg---~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      ... .+..+......++|||||++|+..+.++   .|.+||+.++... .+.+......+.|+|||++++..+.+
T Consensus       327 ~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        327 SAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEec
Confidence            543 3333334455789999999998765432   6999999888765 44444455678999999988877664

>KOG2139|consensus

Probab=99.03  E-value=7e-09  Score=98.04  Aligned_cols=150  Identities=17%  Similarity=0.220  Sum_probs=109.3

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC-CcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH-PVTCICIEFDPT-GKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h-~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~~   83 (432)
                      ++.-++|+|.-.-+ +.+..|..     +++++... .+...++.. ...|+|++|-|. ++-|+.|+.. -|+||....
T Consensus       100 dlr~~aWhqH~~~f-ava~nddv-----Vriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~  171 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAF-AVATNDDV-----VRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSR  171 (445)
T ss_pred             ceeeEeechhhhhh-hhhccCcE-----EEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCc
Confidence            35677888855444 44444544     45555434 555555543 467999999994 4667777755 589997652


Q ss_pred             ----Ce--------e--EEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCC
Q psy9319          84 ----LT--------C--IRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQ  147 (432)
Q Consensus        84 ----~~--------~--~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg  147 (432)
                          +.        +  +....+| .+|+++.|.+||..+++++ .|..|.|||..++..+.... ..+.+.-+.|||||
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC
Confidence                11        1  1122334 6899999999999999998 57889999999999887774 67778899999999


Q ss_pred             cEEEEEECCCeEEEEeC
Q psy9319         148 YLLAYACDDKYDRKQDC  164 (432)
Q Consensus       148 ~~l~s~s~d~~I~vwd~  164 (432)
                      .+|++++-|+.-++|..
T Consensus       251 d~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CEEEEecccceeeeehh
Confidence            99999999999888854

>KOG1524|consensus

Probab=99.03  E-value=1.9e-09  Score=106.23  Aligned_cols=132  Identities=18%  Similarity=0.180  Sum_probs=96.1

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |.+..|+|+|.-+ .++..|+.     |.+|. .+|..-.++-....+|.|++|.|+.+.++.+. .+.+.|=.+.....
T Consensus       107 ~~~gRW~~dGtgL-lt~GEDG~-----iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k  178 (737)
T KOG1524|consen  107 ISSGRWSPDGAGL-LTAGEDGV-----IKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK  178 (737)
T ss_pred             hhhcccCCCCcee-eeecCCce-----EEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccc
Confidence            5677899999988 55555554     45554 34555556666678999999999876655543 34566767766666


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccC
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPK  146 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspd  146 (432)
                      +..+..|.+-|.+++|+|.+.++++|+.|...++||.........-.|..+|++++|.|+
T Consensus       179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc
Confidence            778899999999999999999999999999999999754333222335555666666665

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.9e-08  Score=102.72  Aligned_cols=139  Identities=16%  Similarity=0.066  Sum_probs=102.1

Q ss_pred             eeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCC
Q psy9319          31 QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK---DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA  107 (432)
Q Consensus        31 ~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~  107 (432)
                      ...+.++|. .+.....+..|...+.+.+|||||+.|+..+.   +..|.+||+.++.. ..+..+.+.+.+.+|||||+
T Consensus       181 ~~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        181 IKRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             ceEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC
Confidence            456677776 45566677888889999999999999887764   46899999988765 34555667788999999999


Q ss_pred             EEE-EEeCCC--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC-CCeEEEEeCCceEEeecCCCce
Q psy9319         108 LIA-SGSEDL--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD-DKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       108 ~l~-sgs~dg--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      .|+ +.+.++  .|++||+.++.......+........|+|||..|++++. ++.      ..|.++++.++..
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~------~~Iy~~d~~g~~~  326 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGS------PQLYVMNADGSNP  326 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCC------CeEEEEECCCCCe
Confidence            776 445454  488889988876544345555677999999998887764 332      2366667665544

>KOG1524|consensus

Probab=99.02  E-value=2.7e-09  Score=105.23  Aligned_cols=137  Identities=12%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.|++|.|+.+.++.+ .      ...+.+........+-...+|.+-|.|+.|+|...++++|+.|-..+|||.. |
T Consensus       146 ~~v~c~~W~p~S~~vl~c-~------g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G  217 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFC-Q------GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-G  217 (737)
T ss_pred             ceeEEEEECCCCCceEEe-c------CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-C
Confidence            457899999988877433 2      2234444444445566778999999999999999999999999999999986 6


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      ..+..-..|+-+|++++|.|+ ..++.+|.+ ++++          .-...+.|..++|||||..+++|+..|.+.+
T Consensus       218 ~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  218 ANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cccccCChhccceeeeeeccc-cceeeeeee-eeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            667777789999999999999 666666643 3331          1125677999999999999999999888654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=2e-08  Score=102.24  Aligned_cols=165  Identities=15%  Similarity=0.118  Sum_probs=104.7

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCc---ceeeEEEccCCcCEEEEEEcCCCCEEEEEe-CCCeEEEE--eC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK---LEEQNILKAHPVTCICIEFDPTGKYFAVGS-KDALVSLW--DA   81 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~sgs-~dg~I~iw--d~   81 (432)
                      ....|+|+|..++.+...++...++. ..|+...   +.......++.+.....+|||||+.|+..+ .+|...||  ++
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~-~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFI-QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeE-EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            34679999988866554444433332 2345443   233333333334456789999999887765 35644444  55


Q ss_pred             CC-CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          82 AE-LTCIRTFQRLDWPVRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        82 ~~-~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      .. +.....+..+...+....|||||+.|+..+.+   ..|.+||+.+++..........+....|+|||+.|+..+.++
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC
Confidence            42 23344555555677889999999998877643   469999999887654443445677899999999887655432


Q ss_pred             eEEEEeCCceEEeecCCCcee
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIK  178 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~  178 (432)
                      .     ...+.++++.++...
T Consensus       393 g-----~~~L~~vdl~~g~~~  408 (428)
T PRK01029        393 N-----ESELYLISLITKKTR  408 (428)
T ss_pred             C-----CceEEEEECCCCCEE
Confidence            1     123667777766543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.9e-08  Score=102.54  Aligned_cols=146  Identities=12%  Similarity=0.053  Sum_probs=99.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEEE--eCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-DALVSLW--DAAE   83 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~iw--d~~~   83 (432)
                      +....|+|++..++.+.+.++...+|   .+|...+ ....+..+.+......|+|||+.|+..+. ++...||  ++.+
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy---~~d~~~~-~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIY---TVNADGS-GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEE---EEECCCC-CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            45778999999886676667655444   4444443 35566666666778899999998876664 4555555  4444


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC---eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDL---TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg---~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      +.. ..+..+.......+|||||++|+..+.++   .|.+||+.++.... +........+.|+|||..|+.++.++.
T Consensus       318 g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g  393 (427)
T PRK02889        318 GAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGG  393 (427)
T ss_pred             Cce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCC
Confidence            443 22222333445688999999998877554   69999998887543 333334567899999999988876553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.98  E-value=4.2e-08  Score=99.44  Aligned_cols=147  Identities=17%  Similarity=0.127  Sum_probs=103.1

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEE-EeCCC--eEEEEeCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAV-GSKDA--LVSLWDAA   82 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s-gs~dg--~I~iwd~~   82 (432)
                      .+....|+|++..++.+...++   ...+.+|+..++... .+..+.+.+.+++|+|||+.|+. .+.++  .|++||+.
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~---~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESG---KPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCC---CcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            3566789999998754433322   246778888777543 33445566778999999987764 44444  58889998


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ++.. ..+..+........|+|||+.|+.++..   ..|+++|+.++...........+..+.|+|+|.+++.++.++
T Consensus       267 ~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       267 GKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             CCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence            7654 3444455556678999999988876643   368888988776544333555677889999999999888765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0650|consensus

Probab=98.98  E-value=2.7e-09  Score=106.41  Aligned_cols=206  Identities=18%  Similarity=0.189  Sum_probs=145.2

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+.|..+.|+..|..|.+.+ .+....  .+.+.+++....+..|.--.+.|.++.|+|...+|+.++ ...|+|||+..
T Consensus       521 ~k~i~~vtWHrkGDYlatV~-~~~~~~--~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k  596 (733)
T KOG0650|consen  521 PKSIRQVTWHRKGDYLATVM-PDSGNK--SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK  596 (733)
T ss_pred             CCccceeeeecCCceEEEec-cCCCcc--eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH
Confidence            46678899999999884444 433322  233445555555556655667899999999988888877 45899999998


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      +..+..+......|.+++.+|.|.-|+.|+.|+.++.+|+.-+ ++...+. |...|++++||+.-.++++|+.||++.|
T Consensus       597 qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V  676 (733)
T KOG0650|consen  597 QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV  676 (733)
T ss_pred             HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence            7777777667778999999999999999999999999999755 4455555 8888999999999999999999999777


Q ss_pred             EeCCceEEe-ecCCCc---eeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecc
Q psy9319         162 QDCGNLKVF-GFLPEP---IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRAD  226 (432)
Q Consensus       162 wd~~~i~vw-d~~~~~---~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~  226 (432)
                      +.-   .|| |+-..+   .++.+.||..-.   -++.  -...|  .|.   ..-+++.+.|.+||+|
T Consensus       677 fhg---~VY~Dl~qnpliVPlK~L~gH~~~~---~~gV--Ld~~w--HP~---qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  677 FHG---MVYNDLLQNPLIVPLKRLRGHEKTN---DLGV--LDTIW--HPR---QPWLFSAGADGTIRLF  732 (733)
T ss_pred             Eee---eeehhhhcCCceEeeeeccCceeec---ccce--Eeecc--cCC---CceEEecCCCceEEee
Confidence            653   222 222222   345666764320   0110  00001  122   1237899999999987

>KOG3881|consensus

Probab=98.97  E-value=1.4e-08  Score=96.79  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=115.7

Q ss_pred             ccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC---------CcCEEEEEEcCC--CCEEEEEeCCCeEEEE
Q psy9319          11 GLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH---------PVTCICIEFDPT--GKYFAVGSKDALVSLW   79 (432)
Q Consensus        11 ~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h---------~~~V~~l~~spd--g~~L~sgs~dg~I~iw   79 (432)
                      .-+|....+++++..-   ++-.+.+||....+++..-+.-         .-.++++.|-|.  ...|++++.-+.|++|
T Consensus       155 r~~~~~p~Iva~GGke---~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~Y  231 (412)
T KOG3881|consen  155 RQTDTDPYIVATGGKE---NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLY  231 (412)
T ss_pred             ccCCCCCceEecCchh---cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEe
Confidence            3445555565655443   2345667776665443332211         124567888776  7889999999999999


Q ss_pred             eCCCCe-eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE-Ee-cCCceEEEEEccCCcEEEEEECC
Q psy9319          80 DAAELT-CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD-IC-IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        80 d~~~~~-~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~-~~-~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      |+..+. ++..|.-.+.+++++...|+|+++++|..-+.+..+|++++..+.. +. ..+.|+++..+|.+.+++++|-|
T Consensus       232 Dt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  232 DTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             cCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence            998754 5777877788999999999999999999999999999999988776 43 78889999999999999999999


Q ss_pred             CeEEEEeC
Q psy9319         157 KYDRKQDC  164 (432)
Q Consensus       157 ~~I~vwd~  164 (432)
                      +.+||+|+
T Consensus       312 RyvRIhD~  319 (412)
T KOG3881|consen  312 RYVRIHDI  319 (412)
T ss_pred             eeEEEeec
Confidence            99555544

>KOG1587|consensus

Probab=98.94  E-value=5.4e-09  Score=107.66  Aligned_cols=161  Identities=16%  Similarity=0.074  Sum_probs=110.6

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee-EEEccCCcCEEEEEEcCCC--CEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ-NILKAHPVTCICIEFDPTG--KYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~-~~l~~h~~~V~~l~~spdg--~~L~sgs~dg~I~iwd   80 (432)
                      +..|.++.|+|....++++|+.++.+-.|+++-........+ .....|..+|+.+.|-.+-  .-|+++|.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            345789999999999989988777766666552211001111 2234688999999997643  4489999999999998


Q ss_pred             CCCC---------------------------------------------ee------------------EEEEeeCCCCE
Q psy9319          81 AAEL---------------------------------------------TC------------------IRTFQRLDWPV   97 (432)
Q Consensus        81 ~~~~---------------------------------------------~~------------------~~~~~~h~~~V   97 (432)
                      ++.-                                             ..                  ...+..|.++|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            7520                                             00                  01122466789


Q ss_pred             EEEEEeeCCCEEEEEeCCCeEEEEeCC-CCcEEEEEe-cCCceEEEEEccCC-cEEEEEECCCeEEEEeC
Q psy9319          98 RAISFSHDGALIASGSEDLTIDIAHVE-SGKKVYDIC-IQAATFTVAWHPKQ-YLLAYACDDKYDRKQDC  164 (432)
Q Consensus        98 ~~i~~spdg~~l~sgs~dg~V~vwd~~-~~~~~~~~~-~~~~V~~l~fspdg-~~l~s~s~d~~I~vwd~  164 (432)
                      +++.++|=+..++..+.|.+|++|... ...++..+. +...|.+++|||.. ..++++..||.|.+||+
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence            999999966655555559999999987 555555554 56669999999976 56667777998444443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=1e-07  Score=97.26  Aligned_cols=162  Identities=11%  Similarity=-0.004  Sum_probs=107.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEE-EeCCC--eEEEEeCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAV-GSKDA--LVSLWDAA   82 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s-gs~dg--~I~iwd~~   82 (432)
                      .+....|+|++..++.+ +.+.  ....+.+++..++.... +....+.+.+.+|||||+.|+. .+.++  .|.+||+.
T Consensus       200 ~~~~p~wSpDG~~la~~-s~~~--~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        200 PILSPRWSPDGKRIAYV-SFEQ--KRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             ceeeeeECCCCCEEEEE-EcCC--CCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            45667899999887444 3322  23467777877775433 3333455667899999998864 44444  68888998


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-C--CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSE-D--LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-d--g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      ++.. ..+..+........|+|||+.|+..+. +  ..|+++|+.+++...............|+|+|..|+..+.++. 
T Consensus       276 ~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-  353 (430)
T PRK00178        276 SRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-  353 (430)
T ss_pred             CCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-
Confidence            7764 345556666777899999998877664 2  3688889888875433322233445789999999988775432 


Q ss_pred             EEEeCCceEEeecCCCce
Q psy9319         160 RKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~  177 (432)
                       .   ..+.+||+.++..
T Consensus       354 -~---~~l~~~dl~tg~~  367 (430)
T PRK00178        354 -N---FHVAAQDLQRGSV  367 (430)
T ss_pred             -c---eEEEEEECCCCCE
Confidence             0   1266677776654

>KOG0280|consensus

Probab=98.90  E-value=6.5e-09  Score=95.82  Aligned_cols=145  Identities=21%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             ccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCee
Q psy9319           9 LLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA-ELTC   86 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~-~~~~   86 (432)
                      ++.|++.+..+ ++...++++..  +.. .....+.++..++|.-.++...|+. +.+++++|++|+.+..||++ .+..
T Consensus       126 slD~~~~~~~i-~vs~s~G~~~~--v~~-t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  126 SLDISTSGTKI-FVSDSRGSISG--VYE-TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF  201 (339)
T ss_pred             EEEeeccCceE-EEEcCCCcEEE--Eec-ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence            45566666655 33333333331  111 1122345567889999999999987 56899999999999999998 4444


Q ss_pred             EEE-EeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCC-CCcEEEEEecCCceEEEEEccCC--cEEEEEECCC
Q psy9319          87 IRT-FQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVE-SGKKVYDICIQAATFTVAWHPKQ--YLLAYACDDK  157 (432)
Q Consensus        87 ~~~-~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~-~~~~~~~~~~~~~V~~l~fspdg--~~l~s~s~d~  157 (432)
                      +.. ..-|...|.+|.-+| .+.+|+||+-|-.|++||.+ -++++..-...+.|+.+.++|.-  ..|+++..+|
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC
Confidence            433 456889999998887 78899999999999999999 47888777788999999999953  4566666776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=1.2e-07  Score=97.08  Aligned_cols=163  Identities=15%  Similarity=0.053  Sum_probs=105.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEE-EeCCCe--EEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAV-GSKDAL--VSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s-gs~dg~--I~iwd~   81 (432)
                      ..+....|+|++..++.+...++.   ..+.++|..+++.. .+....+.....+|||||+.|+. .+.++.  |.++|+
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~---~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRK---AEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCC---cEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            345678999999987444333332   45677777766543 23333334457899999998765 455664  778898


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-C--CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSE-D--LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-d--g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .++.. ..+..+.......+|+|||+.|+..+. +  ..|+++|+.+++..............+|+|||.+|+..+.++.
T Consensus       294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            87654 445555566778999999998877664 3  3577788888775443223333445799999999888765431


Q ss_pred             EEEEeCCceEEeecCCCce
Q psy9319         159 DRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~  177 (432)
                           ...|.++|+.++..
T Consensus       373 -----~~~I~~~dl~~g~~  386 (448)
T PRK04792        373 -----KFNIARQDLETGAM  386 (448)
T ss_pred             -----ceEEEEEECCCCCe
Confidence                 01244566666543

>KOG1587|consensus

Probab=98.89  E-value=7.7e-09  Score=106.56  Aligned_cols=155  Identities=15%  Similarity=0.068  Sum_probs=111.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcc-----eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL-----EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~-----~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      +.+++|.|.....++.|+.+|.+....-.  +....     +.+..+..|.++|+++.++|=+..++..+.|-+|+||..
T Consensus       350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~--g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~  427 (555)
T KOG1587|consen  350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRK--GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE  427 (555)
T ss_pred             eeeEeeccCCCceEEEEcCCcEEEEEecc--CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccc
Confidence            46778888777766777777765433222  22111     234466678999999999996654444444999999998


Q ss_pred             C-CCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCc--EEEEEe-cCCceEEEEEccCCcEEEEEECC
Q psy9319          82 A-ELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGK--KVYDIC-IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        82 ~-~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~--~~~~~~-~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      . ...++..+..+...|++++||| ....|+++..||.+.+||+....  ++.... .......+.|++.|.+|++|...
T Consensus       428 ~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~  507 (555)
T KOG1587|consen  428 DVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN  507 (555)
T ss_pred             cCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC
Confidence            7 5666777777888899999999 55688889999999999997543  333333 34445668888889999999999


Q ss_pred             CeEEEEe
Q psy9319         157 KYDRKQD  163 (432)
Q Consensus       157 ~~I~vwd  163 (432)
                      |++.+|+
T Consensus       508 G~~~~~~  514 (555)
T KOG1587|consen  508 GTTHILK  514 (555)
T ss_pred             CcEEEEE
Confidence            9933333

>KOG2321|consensus

Probab=98.87  E-value=2.5e-08  Score=99.22  Aligned_cols=130  Identities=16%  Similarity=0.212  Sum_probs=102.7

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe------eCCC-----CEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ------RLDW-----PVRAIS  101 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~------~h~~-----~V~~i~  101 (432)
                      +++-.++..|..+..+....+.++++..++...+|++|+.+|.|..||.++...+.++.      .|.+     .|+++.
T Consensus       156 evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~  235 (703)
T KOG2321|consen  156 EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK  235 (703)
T ss_pred             ceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEE
Confidence            45556778899999998888999999999988899999999999999998766555443      2333     499999


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC--CceEEEEEccC--CcEEEEEECCCeEEEEe
Q psy9319         102 FSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ--AATFTVAWHPK--QYLLAYACDDKYDRKQD  163 (432)
Q Consensus       102 ~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~--~~V~~l~fspd--g~~l~s~s~d~~I~vwd  163 (432)
                      |+.+|-.+++|+.+|.|.|||+++.+++..-.|.  .+|..+.|.+.  +..+++. ....++|||
T Consensus       236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd  300 (703)
T KOG2321|consen  236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWD  300 (703)
T ss_pred             ecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcc
Confidence            9999999999999999999999999988877654  56888999775  3445543 344534443

>KOG1517|consensus

Probab=98.86  E-value=1.3e-08  Score=107.44  Aligned_cols=155  Identities=19%  Similarity=0.190  Sum_probs=117.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcC--EEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVT--CICIEFDPTGK-YFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~--V~~l~~spdg~-~L~sgs~dg~I~iwd~   81 (432)
                      ++|..+.-+..+..++++|..|++++.+|.+.-...  ..+.....|+..  |..+.+.+.|- .|++|+.+|.|++||+
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence            456666666555455688999999988888864432  567788889877  99999988664 5999999999999999


Q ss_pred             CCCee--EEEEeeCC--C-CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCc
Q psy9319          82 AELTC--IRTFQRLD--W-PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--------IQAATFTVAWHPKQY  148 (432)
Q Consensus        82 ~~~~~--~~~~~~h~--~-~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--------~~~~V~~l~fspdg~  148 (432)
                      +....  ..++..|-  + ..+++..+++...+|+|+. +.|.||++. |+.+..+.        ..+.+.|++|||..-
T Consensus      1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred             ccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH
Confidence            86422  22333332  3 5999999999999999998 999999985 33333332        335579999999999


Q ss_pred             EEEEEECCCeEEEEe
Q psy9319         149 LLAYACDDKYDRKQD  163 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd  163 (432)
                      ++|+|+.|.+|.||.
T Consensus      1365 llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYS 1379 (1387)
T ss_pred             hhhhccCCceEEEee
Confidence            999999999955443

>KOG2315|consensus

Probab=98.86  E-value=1.4e-07  Score=93.92  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             cccCCCCcceeeeeeecCCC------ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEE--EeCCCeEEEEeC
Q psy9319          10 LGLNPRPSLYQSSVLTDISP------KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAV--GSKDALVSLWDA   81 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D~~~------~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s--gs~dg~I~iwd~   81 (432)
                      +.|++.+.-+++-++.|..-      ..-.+++.+.....+...+ ...++|.++.|+|+|+-++.  |-.-..+.|||+
T Consensus       223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl  301 (566)
T KOG2315|consen  223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL  301 (566)
T ss_pred             EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence            45777665554544444321      1234455554422333333 33699999999999976654  556678999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      + +.++..|  .+++-+++-|+|.|++|+.++.+   |.+-|||+.+.+++..+.... -+-+.|+|||.+++|++..-+
T Consensus       302 r-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPR  377 (566)
T KOG2315|consen  302 R-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPR  377 (566)
T ss_pred             C-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEecccc
Confidence            7 5555544  56788899999999999988865   789999999988887775333 345899999999999988755


Q ss_pred             EEEEeCCceEEeecCC
Q psy9319         159 DRKQDCGNLKVFGFLP  174 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~  174 (432)
                      ++|=+  .+++|+...
T Consensus       378 lrvdN--g~KiwhytG  391 (566)
T KOG2315|consen  378 LRVDN--GIKIWHYTG  391 (566)
T ss_pred             EEecC--CeEEEEecC
Confidence            55433  378888653

>KOG1538|consensus

Probab=98.85  E-value=3.9e-09  Score=106.35  Aligned_cols=107  Identities=18%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                      .|..++|-|||+.|+.+. +..+.+||.+.|..+.++.+|...|++++|+.||..+++|+.|..|.+|... -+.+..+.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec
Confidence            788999999999888776 4479999999999999999999999999999999999999999999999853 23344566


Q ss_pred             cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         134 IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       134 ~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      |...|.|+.|+|-...|++++-.. .-+|.
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLsd-FglWS  120 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLSD-FGLWS  120 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchhh-ccccC
Confidence            999999999999988888887543 23444

>KOG3881|consensus

Probab=98.85  E-value=5.3e-08  Score=93.00  Aligned_cols=188  Identities=13%  Similarity=0.064  Sum_probs=128.7

Q ss_pred             eeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC-CCEEEEEeCC--CeEEEEeCCCCeeEEEEeeC---
Q psy9319          20 QSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT-GKYFAVGSKD--ALVSLWDAAELTCIRTFQRL---   93 (432)
Q Consensus        20 ~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~sgs~d--g~I~iwd~~~~~~~~~~~~h---   93 (432)
                      +++|..++.+..|.+...|.... .+..+..+ .++..+.-+|. ..++++|+..  ..+.|||+...+.+.+-..-   
T Consensus       118 Litc~~sG~l~~~~~k~~d~hss-~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD  195 (412)
T KOG3881|consen  118 LITCVSSGNLQVRHDKSGDLHSS-KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND  195 (412)
T ss_pred             EEEEecCCcEEEEeccCCccccc-cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence            35665555555555443333222 22333333 45666777774 4566678888  78999999977544333211   


Q ss_pred             ------CCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          94 ------DWPVRAISFSHD--GALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        94 ------~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                            .-.++++.|-|.  ...|++++.-+.|++||.+.+ .++..+. ...+++++...|+|+++++|..-+.     
T Consensus       196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-----  270 (412)
T KOG3881|consen  196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-----  270 (412)
T ss_pred             cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-----
Confidence                  124667888886  789999999999999999876 5677776 6788999999999999999998888     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                         +..+|++.+..+....++...|.+...++          |..+.   +.+.+-|.-+|+.|...
T Consensus       271 ---l~~FD~r~~kl~g~~~kg~tGsirsih~h----------p~~~~---las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  271 ---LAKFDLRGGKLLGCGLKGITGSIRSIHCH----------PTHPV---LASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ---hheecccCceeeccccCCccCCcceEEEc----------CCCce---EEeeccceeEEEeeccc
Confidence               77777777776655444444444433322          33344   77888899999999877

>KOG0974|consensus

Probab=98.84  E-value=3.3e-08  Score=104.50  Aligned_cols=103  Identities=20%  Similarity=0.179  Sum_probs=88.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEE--EEecCC
Q psy9319          59 EFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY--DICIQA  136 (432)
Q Consensus        59 ~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~--~~~~~~  136 (432)
                      -++++.-++++|+--+.|.+|+...-.....+.+|.+.|.++.|+.||.++++.|.|.++++|++.+++.+.  -+.|..
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            346777889999999999999987433334688999999999999999999999999999999999987665  456999


Q ss_pred             ceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         137 ATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       137 ~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .|+.++|+|.  .+++++.|-+.++|+
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~  244 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWG  244 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEe
Confidence            9999999998  899999999966653

>KOG1963|consensus

Probab=98.83  E-value=5.1e-08  Score=101.44  Aligned_cols=156  Identities=19%  Similarity=0.166  Sum_probs=119.0

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      +.+.++||++..+ +++..|+.+..|.=.- ..........+.-|...|.+++|+++|.+|+||+..+.+.+|.+.++. 
T Consensus       208 ~t~~~~spn~~~~-Aa~d~dGrI~vw~d~~-~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-  284 (792)
T KOG1963|consen  208 ITCVALSPNERYL-AAGDSDGRILVWRDFG-SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-  284 (792)
T ss_pred             ceeEEeccccceE-EEeccCCcEEEEeccc-cccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-
Confidence            5789999999876 6666666544432110 011123455678899999999999999999999999999999999987 


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe------------cCCceEEEEEccCCcEEEEEE
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC------------IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~------------~~~~V~~l~fspdg~~l~s~s  154 (432)
                      ..-+.--.++|..+.+|||+.+.+....|+.|.+....+.....++.            ..+-...++++|..+.++..+
T Consensus       285 kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~  364 (792)
T KOG1963|consen  285 KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG  364 (792)
T ss_pred             cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence            44455567899999999999999999999999988775544433332            123356789999777888889


Q ss_pred             CCCeEEEEeCC
Q psy9319         155 DDKYDRKQDCG  165 (432)
Q Consensus       155 ~d~~I~vwd~~  165 (432)
                      ..|.|.+||+-
T Consensus       365 ~~g~vQ~ydl~  375 (792)
T KOG1963|consen  365 HPGHVQFYDLY  375 (792)
T ss_pred             CCceEEEEecc
Confidence            99999999973

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=2.7e-07  Score=94.11  Aligned_cols=140  Identities=14%  Similarity=0.052  Sum_probs=97.2

Q ss_pred             ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCC
Q psy9319          30 KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD---ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG  106 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg  106 (432)
                      ..+.+.++|... .....+..+...+.+.+|||||+.|+..+.+   ..|.+||+.++... .+....+.+...+|||||
T Consensus       177 ~~~~l~~~d~~g-~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG  254 (430)
T PRK00178        177 TRYTLQRSDYDG-ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDG  254 (430)
T ss_pred             cceEEEEECCCC-CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCC
Confidence            355677777654 4455666777889999999999998876644   36899999887653 333344456678999999


Q ss_pred             CEEEE-EeCCC--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC-CCeEEEEeCCceEEeecCCCce
Q psy9319         107 ALIAS-GSEDL--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD-DKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       107 ~~l~s-gs~dg--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      +.|+. .+.+|  .|++||+.++.......+........|+|||..|+..+. ++.      ..+.++++.++..
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~------~~iy~~d~~~g~~  323 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK------PQIYKVNVNGGRA  323 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCC------ceEEEEECCCCCE
Confidence            98874 44444  688999998876543335555667899999998877664 333      2355666666654

>KOG1517|consensus

Probab=98.81  E-value=7.9e-08  Score=101.65  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=108.7

Q ss_pred             cccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC-CcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe--
Q psy9319          10 LGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH-PVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELT--   85 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h-~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~--   85 (432)
                      ++|.+....++++|      ..-.|++||...-..+..+... ...|+++.-+. .|+.+++|..||+|++||.+...  
T Consensus      1171 ~dWqQ~~G~Ll~tG------d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTG------DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred             eehhhhCCeEEecC------CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence            45666666665664      3457888888777777766543 34566665443 57999999999999999987432  


Q ss_pred             -eEEEEeeCCCC--EEEEEEeeCCCE-EEEEeCCCeEEEEeCCCCcEEEEE---ec---CCceEEEEEccCCcEEEEEEC
Q psy9319          86 -CIRTFQRLDWP--VRAISFSHDGAL-IASGSEDLTIDIAHVESGKKVYDI---CI---QAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        86 -~~~~~~~h~~~--V~~i~~spdg~~-l~sgs~dg~V~vwd~~~~~~~~~~---~~---~~~V~~l~fspdg~~l~s~s~  155 (432)
                       .+.....|...  |..+.+.+.|-- |++||.||.|.+||++.......+   .+   ++..+++..|++..++|+|+.
T Consensus      1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence             46677788877  999999986654 999999999999999985322222   12   335999999999999999988


Q ss_pred             CCeEEEEeC
Q psy9319         156 DKYDRKQDC  164 (432)
Q Consensus       156 d~~I~vwd~  164 (432)
                       +.|.||++
T Consensus      1325 -q~ikIy~~ 1332 (1387)
T KOG1517|consen 1325 -QLIKIYSL 1332 (1387)
T ss_pred             -ceEEEEec
Confidence             78555544

>KOG0322|consensus

Probab=98.78  E-value=1.2e-08  Score=92.77  Aligned_cols=72  Identities=22%  Similarity=0.302  Sum_probs=68.3

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                      .-.|..+..-||++.+|+++.|+.|+||...+..++..+.-|...|++++|+|+..++|.+|.|+.|.+|++
T Consensus       251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            356788899999999999999999999999999999999999999999999999999999999999999986

>KOG2321|consensus

Probab=98.77  E-value=4e-08  Score=97.84  Aligned_cols=153  Identities=14%  Similarity=0.173  Sum_probs=116.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE------ccCCcC-----EEEEEEcCCCCEEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL------KAHPVT-----CICIEFDPTGKYFAVGSKD   73 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l------~~h~~~-----V~~l~~spdg~~L~sgs~d   73 (432)
                      .++++|.++|-+.++ ++|..|+.+     .+||..+...+.++      ..|.+.     |+++.|+.+|-.+++|+.+
T Consensus       176 ~~lN~v~in~~hgLl-a~Gt~~g~V-----EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~  249 (703)
T KOG2321|consen  176 GELNVVSINEEHGLL-ACGTEDGVV-----EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST  249 (703)
T ss_pred             ccceeeeecCccceE-EecccCceE-----EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC
Confidence            467888899988876 666666655     45555444444333      334444     9999999999999999999


Q ss_pred             CeEEEEeCCCCeeEEEEe-eCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEE
Q psy9319          74 ALVSLWDAAELTCIRTFQ-RLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLL  150 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~-~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l  150 (432)
                      |.|.|||+++..++..-. +...+|..+.|.+.  +..++|+ ....++|||-.+|+....+.....+..+|+-|++-++
T Consensus       250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~  328 (703)
T KOG2321|consen  250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMF  328 (703)
T ss_pred             CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceE
Confidence            999999999888765443 23457999999884  4455544 4568999999999999999888889999999999999


Q ss_pred             EEEECCCeEEEEeC
Q psy9319         151 AYACDDKYDRKQDC  164 (432)
Q Consensus       151 ~s~s~d~~I~vwd~  164 (432)
                      +++-.++.+..|-+
T Consensus       329 f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  329 FTANESSKMHTYYI  342 (703)
T ss_pred             EEecCCCcceeEEc
Confidence            99988877655543

>KOG4547|consensus

Probab=98.77  E-value=2.7e-07  Score=92.44  Aligned_cols=156  Identities=14%  Similarity=0.068  Sum_probs=119.6

Q ss_pred             CCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc---CCcCEEEEEEc--------------------CCCCEEEEEe
Q psy9319          15 RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA---HPVTCICIEFD--------------------PTGKYFAVGS   71 (432)
Q Consensus        15 ~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~---h~~~V~~l~~s--------------------pdg~~L~sgs   71 (432)
                      .+..+++....|+     -+++|+...++...-+..   -++..++..|.                    .+...++-|.
T Consensus         3 ~~~~~~A~~~~~g-----~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDG-----RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCC-----eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            3333445544444     456666667666554432   23445555552                    1334677888


Q ss_pred             CCCeEEEEeCCCCeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCc
Q psy9319          72 KDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQY  148 (432)
Q Consensus        72 ~dg~I~iwd~~~~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~  148 (432)
                      ..|.|.+|+...|+....+.  +|.+.|.++.++.+-..|.+++.|+.+..|+...+..+.... ....+.+++.+|||.
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            89999999999998877776  589999999999999999999999999999999998888776 566689999999999


Q ss_pred             EEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         149 LLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      .+++++..          |++||+.+++.+..|.||.
T Consensus       158 ~l~~as~~----------ik~~~~~~kevv~~ftgh~  184 (541)
T KOG4547|consen  158 ILLTASRQ----------IKVLDIETKEVVITFTGHG  184 (541)
T ss_pred             EEEeccce----------EEEEEccCceEEEEecCCC
Confidence            99998754          8888888888888888875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=6e-07  Score=91.44  Aligned_cols=163  Identities=15%  Similarity=0.053  Sum_probs=97.4

Q ss_pred             cccccCCCCcceee--eeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-----CCeEEEEe
Q psy9319           8 PLLGLNPRPSLYQS--SVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-----DALVSLWD   80 (432)
Q Consensus         8 ~~l~~~p~~~~l~~--s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-----dg~I~iwd   80 (432)
                      ..=.|+|++..+..  ....++   ...|.+.+..++... .+....+.....+|||||+.|+..+.     +..+.+|+
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g---~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLG---VPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             ccceEccCCCceEEEEEEccCC---CceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence            34469999876422  222222   245666676666443 33334455567899999998876553     22344577


Q ss_pred             CCCC---eeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCe--EEEEeCCC-CcEEEEEe-cCCceEEEEEccCCcEEEE
Q psy9319          81 AAEL---TCIRTFQRLDWPVRAISFSHDGALIASGS-EDLT--IDIAHVES-GKKVYDIC-IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        81 ~~~~---~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~--V~vwd~~~-~~~~~~~~-~~~~V~~l~fspdg~~l~s  152 (432)
                      +..+   .......++.+.....+|||||+.|+..+ .+|.  |+++++.. +.....+. ....+....|+|||+.|+.
T Consensus       264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf  343 (428)
T PRK01029        264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAF  343 (428)
T ss_pred             cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEE
Confidence            7653   32222222234456789999999888766 3554  55555542 23333343 4456778999999998887


Q ss_pred             EECCCeEEEEeCCceEEeecCCCceee
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~~~  179 (432)
                      .+.++.     ...|.+||+.++....
T Consensus       344 ~~~~~g-----~~~I~v~dl~~g~~~~  365 (428)
T PRK01029        344 CSVIKG-----VRQICVYDLATGRDYQ  365 (428)
T ss_pred             EEcCCC-----CcEEEEEECCCCCeEE
Confidence            765421     1237778887776543

>KOG1064|consensus

Probab=98.73  E-value=4.7e-08  Score=108.01  Aligned_cols=152  Identities=16%  Similarity=0.204  Sum_probs=119.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|.++.-+|....+ .+++.|++++.|...     .++.+.++. +....|+.+.|+.+|+.+..+..||.+.+|.+. 
T Consensus      2209 ~~v~r~~sHp~~~~Y-ltgs~dgsv~~~~w~-----~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYY-LTGSQDGSVRMFEWG-----HGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             CceeeecCCCCCceE-EecCCCceEEEEecc-----CCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            345667778888877 888888887666543     555555554 334789999999999999999999999999987 


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEe---CCCeEEEEeCCCC--cEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGS---EDLTIDIAHVESG--KKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs---~dg~V~vwd~~~~--~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ..+......|....+.+.|-.  ..+++++   .++.+++||..-.  ..+....|.+.++++++.|....|++||.+|.
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence            566777788988888888865  5666654   5689999997533  22222559999999999999999999999999


Q ss_pred             EEEEeCC
Q psy9319         159 DRKQDCG  165 (432)
Q Consensus       159 I~vwd~~  165 (432)
                      |++||++
T Consensus      2360 v~l~D~r 2366 (2439)
T KOG1064|consen 2360 VCLFDIR 2366 (2439)
T ss_pred             EEEeehH
Confidence            9999974

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.73  E-value=4.2e-07  Score=92.15  Aligned_cols=146  Identities=18%  Similarity=0.137  Sum_probs=102.6

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-A--LVSLWDAAE   83 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-g--~I~iwd~~~   83 (432)
                      +..+.|+|++..++.+.+.++.   ..+.+++..++.. ..+..+.......+|+|||+.|+.++.. +  .|.++|+.+
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~---~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGN---PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCC---ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            4567899999877666554443   4566777766543 4455555556678999999988776643 3  588888877


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC---eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDL---TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg---~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      +.. ..+..+...+..+.|+|+|.+++.++.++   .|.+||+.++... .+..........|+|+|..|+.++.++.
T Consensus       312 ~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       312 GEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             CCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCC
Confidence            654 34444556778899999999999888765   7999999886543 3333333456789999998888876653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0309|consensus

Probab=98.69  E-value=4.1e-08  Score=100.25  Aligned_cols=211  Identities=15%  Similarity=0.114  Sum_probs=147.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .|..+.|+|...-++++|+.|..+..|+.+-    ...++.....-....+.+.|+- ++..+|+ +....|.+||++.|
T Consensus       116 aitd~n~~~q~pdVlatcsvdt~vh~wd~rS----p~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~g  190 (1081)
T KOG0309|consen  116 AITDINFNPQHPDVLATCSVDTYVHAWDMRS----PHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKG  190 (1081)
T ss_pred             ceeccccCCCCCcceeeccccccceeeeccC----CCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCC
Confidence            3577889999999999999999998888762    2345555555445567899987 5555554 55668999999865


Q ss_pred             -eeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcE--EEEEecCCceEEEEEccCC--cEEEEEECCCe
Q psy9319          85 -TCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKK--VYDICIQAATFTVAWHPKQ--YLLAYACDDKY  158 (432)
Q Consensus        85 -~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~--~~~~~~~~~V~~l~fspdg--~~l~s~s~d~~  158 (432)
                       .++..+.+|...|+.++|.. -...+.+++.||+|++||......  -..++...+|+.-.|-|=|  .++.-.-.+..
T Consensus       191 s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~  270 (1081)
T KOG0309|consen  191 STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM  270 (1081)
T ss_pred             CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee
Confidence             56788899999999999876 445678899999999999875433  3444567778888888844  33333333334


Q ss_pred             EEEEeCCc-eEEeecCCC-ceeeeecCCCchhhhHHhhhcccccccccCcc-----ccccccceeccCcceeecccchh
Q psy9319         159 DRKQDCGN-LKVFGFLPE-PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPE-----DRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       159 I~vwd~~~-i~vwd~~~~-~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~-----~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      +.+++-.+ ...|+..++ ..+..+.||.-....         ..||.+-+     ....+.+++.++|..+|+|....
T Consensus       271 v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e---------FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  271 VPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE---------FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eeeccccchhhhhccccCCcceeeecCcchHHHH---------HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            44444332 345665543 578889999754432         23444433     34457799999999999997664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=9.5e-07  Score=90.56  Aligned_cols=139  Identities=16%  Similarity=0.154  Sum_probs=94.6

Q ss_pred             eeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCC
Q psy9319          31 QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD---ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA  107 (432)
Q Consensus        31 ~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~  107 (432)
                      .+.+.++|... .....+..+...+.+.+|||||+.|+..+.+   ..|.+||+.++... .+....+......|||||+
T Consensus       197 ~~~l~i~d~dG-~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        197 PYQLMIADYDG-YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGK  274 (448)
T ss_pred             ceEEEEEeCCC-CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCC
Confidence            45666666543 3345666677889999999999998876543   25889999887643 2332333455789999999


Q ss_pred             EEEE-EeCCC--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC-CCeEEEEeCCceEEeecCCCce
Q psy9319         108 LIAS-GSEDL--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD-DKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       108 ~l~s-gs~dg--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      .|+. .+.++  .|+++|+.+++......+.......+|+|||..|+..+. ++.      ..+.++++.++..
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~------~~Iy~~dl~~g~~  342 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGK------PQIYRVNLASGKV  342 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCC------ceEEEEECCCCCE
Confidence            8875 45555  488889988875443335555677999999998877664 333      2355566666654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.67  E-value=3.4e-06  Score=84.08  Aligned_cols=132  Identities=18%  Similarity=0.162  Sum_probs=95.4

Q ss_pred             eEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEE
Q psy9319          32 LDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIAS  111 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s  111 (432)
                      ..+.+.|..+.+.+..+.........+.|+|||+++++++.||.|.++|+.+++.+.++... ....++++|+||+++++
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v   94 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYV   94 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEE
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEE
Confidence            35677788889999999876555556789999999999999999999999999999888754 45788999999999987


Q ss_pred             Ee-CCCeEEEEeCCCCcEEEEEec--------CCceEEEEEccCCcEEEEEECC-CeEEEEeC
Q psy9319         112 GS-EDLTIDIAHVESGKKVYDICI--------QAATFTVAWHPKQYLLAYACDD-KYDRKQDC  164 (432)
Q Consensus       112 gs-~dg~V~vwd~~~~~~~~~~~~--------~~~V~~l~fspdg~~l~s~s~d-~~I~vwd~  164 (432)
                      ++ ..+.+.++|..+.+.+..+..        ...+..+..+|....++.+-.| +.|.+.|.
T Consensus        95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            76 689999999999999988752        2346778888888756555544 66555553

...

>KOG0280|consensus

Probab=98.67  E-value=2.8e-07  Score=85.25  Aligned_cols=113  Identities=15%  Similarity=0.250  Sum_probs=91.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--EEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCC-CCcEEE
Q psy9319          55 CICIEFDPTGKYFAVGSKDALVSLWDAAELTC--IRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVE-SGKKVY  130 (432)
Q Consensus        55 V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~-~~~~~~  130 (432)
                      ..++.|++.|..++++-.+|.+.+-+......  ++.+.+|...++...|+. +.+++++|+.|+.+..||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45778899888899999999998666554433  447889999999999987 66799999999999999999 445554


Q ss_pred             EE--ecCCceEEEEEcc-CCcEEEEEECCCeEEEEeCCce
Q psy9319         131 DI--CIQAATFTVAWHP-KQYLLAYACDDKYDRKQDCGNL  167 (432)
Q Consensus       131 ~~--~~~~~V~~l~fsp-dg~~l~s~s~d~~I~vwd~~~i  167 (432)
                      .-  .|...|.++.-+| .+.++++|+.|..|++||.+++
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence            42  2888999988876 5789999999999888888754

>KOG4497|consensus

Probab=98.66  E-value=5e-07  Score=84.73  Aligned_cols=150  Identities=16%  Similarity=0.120  Sum_probs=99.2

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCee
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKY-FAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~-L~sgs~dg~I~iwd~~~~~~   86 (432)
                      .-+.|..+...+++....|..+     .+|+.....-...+.....++.+++|||||+. |.+..-|-.|.+|.+.+...
T Consensus        52 ~yieW~ads~~ilC~~yk~~~v-----qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   52 VYIEWKADSCHILCVAYKDPKV-----QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             hheeeeccceeeeeeeeccceE-----EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            3445555555555555555444     45554445556667777888999999999955 55666788999999998765


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeC-C-----------------------------------CeEEEEeCCCCcEEE
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSE-D-----------------------------------LTIDIAHVESGKKVY  130 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~-d-----------------------------------g~V~vwd~~~~~~~~  130 (432)
                      ...-. ....+..++|+|||++.+.++. |                                   +.+.+||---.-.+.
T Consensus       127 ~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  127 YLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             EEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence            43322 2335678889999988776553 2                                   123344422112222


Q ss_pred             EEecCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         131 DICIQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       131 ~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .+...-++..++|+|.+.+|+.|+.|+.+|+-+
T Consensus       206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             eeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence            233445688999999999999999999976654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.65  E-value=1e-07  Score=62.27  Aligned_cols=39  Identities=26%  Similarity=0.584  Sum_probs=37.0

Q ss_pred             ceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319          42 LEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus        42 ~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ++++.++.+|.++|++++|+|++.+|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497|consensus

Probab=98.61  E-value=2.5e-07  Score=86.76  Aligned_cols=141  Identities=16%  Similarity=0.203  Sum_probs=105.9

Q ss_pred             ccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCeeE
Q psy9319           9 LLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAV-GSKDALVSLWDAAELTCI   87 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s-gs~dg~I~iwd~~~~~~~   87 (432)
                      .+.|+|+|+.+ ++++.      ..+-+-|..+.+..+.+.- -..|..+.|+.|..++++ ...++.|.+|++....-.
T Consensus        13 ~c~fSp~g~yi-As~~~------yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   13 FCSFSPCGNYI-ASLSR------YRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             ceeECCCCCee-eeeee------eEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            57899999977 66533      2333446555555443332 355778899998877665 467889999999887777


Q ss_pred             EEEeeCCCCEEEEEEeeCCCEE-EEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          88 RTFQRLDWPVRAISFSHDGALI-ASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        88 ~~~~~h~~~V~~i~~spdg~~l-~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ..+.....++.+++|||||+.| .+...+-.|.+|.+.+..+...-.....+..++|+|||++.+.++.-.
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD  155 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD  155 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence            7888888899999999999655 456679999999998887765444556678899999999998887643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=6.6e-06  Score=83.49  Aligned_cols=164  Identities=10%  Similarity=0.004  Sum_probs=103.7

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-eCC--CeEEEEeCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-SKD--ALVSLWDAAE   83 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s~d--g~I~iwd~~~   83 (432)
                      +..-.|+|++..+++..+.+.  ...++.++|..+++..... ...+.+.+..|||||+.|+.. +.+  ..|.++|+.+
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            456789999985334334442  1237777888777654443 345667778899999877643 333  4688889887


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      +.. ..+..+........|+|||+.|+..+..   ..|.++|+.++........ +. ....|+|+|..|+..+....- 
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-~~~~~SPDG~~Ia~~~~~~~~-  342 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-NNSSVSTYKNYIVYSSRETNN-  342 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC-cCceECCCCCEEEEEEcCCCc-
Confidence            764 4455444434567899999988877642   2688889988776443322 21 235899999998887754310 


Q ss_pred             EE--eCCceEEeecCCCce
Q psy9319         161 KQ--DCGNLKVFGFLPEPI  177 (432)
Q Consensus       161 vw--d~~~i~vwd~~~~~~  177 (432)
                      -+  ....|.+.++.++..
T Consensus       343 ~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             ccCCCCcEEEEEECCCCCe
Confidence            00  012366677776654

>KOG4547|consensus

Probab=98.57  E-value=1.5e-06  Score=87.24  Aligned_cols=131  Identities=15%  Similarity=0.020  Sum_probs=110.5

Q ss_pred             ceeEEEEeecCcceeeEEEc--cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCC
Q psy9319          30 KQLDFKFKEHHKLEEQNILK--AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA  107 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~  107 (432)
                      ..+.|.+++...|+....+.  .|.++|.++.++.+-..|.|++.|+.+..|+...+..+..+.+....+.+++.+|||.
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            44566777777888777776  5889999999999989999999999999999999999999998888999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccC-----CcEEEEE-ECCCeEEEE
Q psy9319         108 LIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPK-----QYLLAYA-CDDKYDRKQ  162 (432)
Q Consensus       108 ~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspd-----g~~l~s~-s~d~~I~vw  162 (432)
                      .+++++  +.|.+||+.+++.+..++ |.++|+++.|.-+     |.+++++ ..+..|.+|
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            998886  579999999999999997 8999999999876     6666654 334444444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=2.5e-07  Score=60.47  Aligned_cols=39  Identities=38%  Similarity=0.606  Sum_probs=37.0

Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      |+++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.57  E-value=1.4e-06  Score=86.72  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccC
Q psy9319          67 FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPK  146 (432)
Q Consensus        67 L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspd  146 (432)
                      +++-..++.|.+.|..+.+.+..+.........+.|+|||+++++++.||.|.++|+.+++.+..+........+++|||
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence            34566789999999999999999986554445578999999999999999999999999999999998888899999999


Q ss_pred             CcEEEEEE-CCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         147 QYLLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       147 g~~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      |+++++++ ..+.        +.++|..+.+.++.+.
T Consensus        89 G~~~~v~n~~~~~--------v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   89 GKYVYVANYEPGT--------VSVIDAETLEPVKTIP  117 (369)
T ss_dssp             TTEEEEEEEETTE--------EEEEETTT--EEEEEE
T ss_pred             CCEEEEEecCCCc--------eeEeccccccceeecc
Confidence            99998775 5677        5555555555554443

...

>KOG1409|consensus

Probab=98.55  E-value=8.5e-07  Score=83.69  Aligned_cols=86  Identities=20%  Similarity=0.327  Sum_probs=74.3

Q ss_pred             cCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCe
Q psy9319          39 HHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT-CIRTFQRLDWPVRAISFSHDGALIASGSEDLT  117 (432)
Q Consensus        39 ~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~  117 (432)
                      ......+.++.+|.+.+++++|.|....|++|..|..|.+||+-... ....+.+|...|..+..-+--+.+.+++.||.
T Consensus       184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~  263 (404)
T KOG1409|consen  184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG  263 (404)
T ss_pred             ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence            34556788899999999999999999999999999999999997433 24567789999999888888888999999999


Q ss_pred             EEEEeCC
Q psy9319         118 IDIAHVE  124 (432)
Q Consensus       118 V~vwd~~  124 (432)
                      |.+||+.
T Consensus       264 i~~w~mn  270 (404)
T KOG1409|consen  264 IVVWNMN  270 (404)
T ss_pred             EEEEecc
Confidence            9999983

>KOG3914|consensus

Probab=98.53  E-value=6.7e-07  Score=85.91  Aligned_cols=160  Identities=13%  Similarity=0.140  Sum_probs=100.6

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEE---EeCCCeEEEEeCCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAV---GSKDALVSLWDAAEL   84 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s---gs~dg~I~iwd~~~~   84 (432)
                      .....+|.+.+++++.+.+ ....+++..- ....++....... ...+++.|..+......   +++...+.+|....+
T Consensus        66 ~~~~~s~~~~llAv~~~~K-~~~~f~~~~~-~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSK-QRAVFDYREN-PKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccCCCceEEEEEeCCC-ceEEEEEecC-CCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            3444566666664443222 2222332211 1123343333332 22344455444444333   344455666666554


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      .+ ..+-||-..+..++|+||+++|+++..|..|++-.......+..+.  |..-|..++.-++ ..|++||.|++    
T Consensus       143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t----  216 (390)
T KOG3914|consen  143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT----  216 (390)
T ss_pred             Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc----
Confidence            44 3455899999999999999999999999999998877666666554  8888999998765 55899999999    


Q ss_pred             eCCceEEeecCCCceeee
Q psy9319         163 DCGNLKVFGFLPEPIKKR  180 (432)
Q Consensus       163 d~~~i~vwd~~~~~~~~~  180 (432)
                          +++||+.+|..+..
T Consensus       217 ----lr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  217 ----LRLWDITSGKLLDT  230 (390)
T ss_pred             ----EEEEecccCCcccc
Confidence                77777777776643

>KOG3914|consensus

Probab=98.51  E-value=2.4e-07  Score=88.98  Aligned_cols=105  Identities=17%  Similarity=0.200  Sum_probs=82.5

Q ss_pred             CCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEE-eeCCCCEEEEEEeeC
Q psy9319          27 ISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF-QRLDWPVRAISFSHD  105 (432)
Q Consensus        27 ~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~i~~spd  105 (432)
                      ..-....+.+|....+ +...+-||-..++.++|+||+++|+++..|..|++-....-..+..| .||...|..++.-++
T Consensus       127 kagD~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~  205 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN  205 (390)
T ss_pred             ecCCceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence            3334455666665553 44456699999999999999999999999999998776644444444 479999999998865


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319         106 GALIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus       106 g~~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                       ..|++||+|++|++||+.+|+++..+.
T Consensus       206 -~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  206 -YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             -ceeeecCCCCcEEEEecccCCcccccc
Confidence             458999999999999999999987664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.48  E-value=7.7e-06  Score=80.26  Aligned_cols=123  Identities=14%  Similarity=0.212  Sum_probs=100.7

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGSKDA-LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK  128 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~  128 (432)
                      +|.+.|.-..+..++.-++.|..|| .+-|+|..++. +..+...-+.|.++..+|+|++++.+.....+++.|+.+|..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            6777898888988888999999999 89999999765 456667778999999999999999999999999999999986


Q ss_pred             EEEEe-cCCceEEEEEccCCcEEEEEECCCe----EEEEeCCceEEeecC
Q psy9319         129 VYDIC-IQAATFTVAWHPKQYLLAYACDDKY----DRKQDCGNLKVFGFL  173 (432)
Q Consensus       129 ~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~----I~vwd~~~i~vwd~~  173 (432)
                      ...-. ..+-|..+.|||+++++|.+-.+|.    |+++|+..-+++++.
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            54433 5666999999999999999988765    555555544555444

>KOG2695|consensus

Probab=98.47  E-value=5.7e-07  Score=84.87  Aligned_cols=127  Identities=10%  Similarity=0.068  Sum_probs=98.7

Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCC
Q psy9319          51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-----LTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVE  124 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~-----~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~  124 (432)
                      -.+.|.++.|...+.++..|+..|.|..+|++.     +.+.+.+. |.+.|+++..-. ++++|.+.+.+|.|.+||++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            346788889988899999999999999999985     45566666 899999988766 78899999999999999998


Q ss_pred             CCcE---EEEEecCCceEE-----EEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchh
Q psy9319         125 SGKK---VYDICIQAATFT-----VAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSS  188 (432)
Q Consensus       125 ~~~~---~~~~~~~~~V~~-----l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss  188 (432)
                      .-++   +..+.  +.|..     +..++....+++++.|..        .++|.+.+|.++.++....|.+
T Consensus       330 ~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcy--------tRiWsl~~ghLl~tipf~~s~~  391 (425)
T KOG2695|consen  330 ATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCY--------TRIWSLDSGHLLCTIPFPYSAS  391 (425)
T ss_pred             hhhcccceeeee--cccccccccccccccccceEEEccCeeE--------EEEEecccCceeeccCCCCccc
Confidence            7766   55543  33332     334556678888999988        7788888888888776655443

>KOG1240|consensus

Probab=98.42  E-value=3.3e-06  Score=91.01  Aligned_cols=125  Identities=18%  Similarity=0.201  Sum_probs=92.6

Q ss_pred             cceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-------CeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          41 KLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE-------LTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        41 ~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      .|..+..|..|...|..++.++ ++.+|++||.||+|++||...       ..+..++..-.+.+.++.+.+.+..+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            5788899999999999999887 559999999999999999863       22344555456789999999999999999


Q ss_pred             eCCCeEEEEeCCCC--cE-----EEEEe--cCCceE-EEEEcc-CC-cEEEEEECCCeEEEEeCC
Q psy9319         113 SEDLTIDIAHVESG--KK-----VYDIC--IQAATF-TVAWHP-KQ-YLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       113 s~dg~V~vwd~~~~--~~-----~~~~~--~~~~V~-~l~fsp-dg-~~l~s~s~d~~I~vwd~~  165 (432)
                      +.||.|.+.++...  ..     .....  ..+.+. .-+|.. .+ ..++.+..-+.|..||++
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence            99999999998752  11     11111  223333 334433 23 377888888889999975

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=8.8e-06  Score=82.57  Aligned_cols=142  Identities=8%  Similarity=-0.051  Sum_probs=94.0

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-A--LVSLWDAAEL   84 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-g--~I~iwd~~~~   84 (432)
                      ....|+|++..++.+.+.++.   .++.+++..++. ...+..+.+......|+|||+.|+..+.. +  .|.+.|+.++
T Consensus       236 ~~~~~SPDG~~la~~~~~~g~---~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        236 VVSDVSKDGSKLLLTMAPKGQ---PDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             EeeEECCCCCEEEEEEccCCC---cEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            345699999888666655443   466666766665 44455554434566899999988776643 2  6888888877


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---------CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSED---------LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---------g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ....... ...  ....|||||+.|+..+..         ..|.+.|+.++... .+..........|+|||..|+..+.
T Consensus       312 ~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        312 SVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEc
Confidence            6533222 111  235899999988876643         36888899888653 3433333446899999998887765


Q ss_pred             CC
Q psy9319         156 DK  157 (432)
Q Consensus       156 d~  157 (432)
                      ++
T Consensus       388 ~~  389 (419)
T PRK04043        388 LG  389 (419)
T ss_pred             cC
Confidence            43

>KOG2315|consensus

Probab=98.39  E-value=1.5e-06  Score=86.75  Aligned_cols=134  Identities=14%  Similarity=0.215  Sum_probs=95.3

Q ss_pred             CCCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC---CCeEEE
Q psy9319           2 EGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK---DALVSL   78 (432)
Q Consensus         2 ~g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~---dg~I~i   78 (432)
                      ++...|.++.|+|++.-+.+....    -.-.+.++|. .+..+  +.-..++-+++-|+|.|++|+.++-   .|.|-|
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGf----MPAkvtifnl-r~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGF----MPAKVTIFNL-RGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEV  340 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEec----ccceEEEEcC-CCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEE
Confidence            455678999999999887443221    1123344443 23343  3445677889999999999887664   478999


Q ss_pred             EeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC------CCeEEEEeCCCCcEEEEEecCCceEEEEEcc
Q psy9319          79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE------DLTIDIAHVESGKKVYDICIQAATFTVAWHP  145 (432)
Q Consensus        79 wd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~------dg~V~vwd~~~~~~~~~~~~~~~V~~l~fsp  145 (432)
                      ||+.+.+++..+....  -+-+.|+|||.+|+|++.      |+.++||+. +|..+......+..+.+.|-|
T Consensus       341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeee
Confidence            9999988888776543  355789999999998875      577999997 666665554444677788876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.35  E-value=2e-05  Score=88.55  Aligned_cols=113  Identities=12%  Similarity=0.010  Sum_probs=80.3

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeEEEEee-------------C--------CCCEEEEEEeeCCCEEEE
Q psy9319          54 TCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQR-------------L--------DWPVRAISFSHDGALIAS  111 (432)
Q Consensus        54 ~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~~~~~~~~-------------h--------~~~V~~i~~spdg~~l~s  111 (432)
                      ....++|+|+|. ++++.+.++.|++||+.++.......+             +        -....+++++|+|.++++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA  820 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA  820 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence            345799999988 445666678999999987653211100             0        012458899999998888


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEecC--------------CceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         112 GSEDLTIDIAHVESGKKVYDICIQ--------------AATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~~~--------------~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      -+.++.|++||..++.........              .....++++++|.++++-+.++.|++||+..
T Consensus       821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            889999999999887655433211              2467899999999888888888866666543

>KOG4532|consensus

Probab=98.34  E-value=3e-05  Score=71.18  Aligned_cols=111  Identities=14%  Similarity=-0.066  Sum_probs=82.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eE-E-EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE-E
Q psy9319          55 CICIEFDPTGKYFAVGSKDALVSLWDAAELT-CI-R-TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV-Y  130 (432)
Q Consensus        55 V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~-~~-~-~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~-~  130 (432)
                      +.++++++|++++++.++...|..|.+.... .+ . .....+..-.+.+|+.....+|++..||++.|||++..... .
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            7889999999999999999999999887432 22 2 22334455678899998899999999999999999875432 2


Q ss_pred             EE-----ecCCceEEEEEccCC--cEEEEEECCCeEEEEeCC
Q psy9319         131 DI-----CIQAATFTVAWHPKQ--YLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       131 ~~-----~~~~~V~~l~fspdg--~~l~s~s~d~~I~vwd~~  165 (432)
                      ..     .|.+.+..+.|+|.|  .+|+.+-.-+.+.+.|++
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            22     278889999999876  455555555664444443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.33  E-value=6.5e-05  Score=74.38  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=93.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEEc-cCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILK-AHPVTCICIEFDPTGKYFAVGS-KDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~-~h~~~V~~l~~spdg~~L~sgs-~dg~I~iwd   80 (432)
                      .+..++.++|++..++++..  +.-.++.+.+ +...+..  ...+. ........++|+|+|++++..+ .+++|.+++
T Consensus       144 ~h~H~v~~~pdg~~v~v~dl--G~D~v~~~~~-~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDL--GADRVYVYDI-DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEET--TTTEEEEEEE--TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccceeEEECCCCCEEEEEec--CCCEEEEEEE-eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence            45578899999988755532  2233333332 3233222  22332 2334568999999999886654 467899998


Q ss_pred             CC--CCee--EEEEeeC------CCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCC--CCcE--EEEEec-CCceEEEEEc
Q psy9319          81 AA--ELTC--IRTFQRL------DWPVRAISFSHDGALIASGS-EDLTIDIAHVE--SGKK--VYDICI-QAATFTVAWH  144 (432)
Q Consensus        81 ~~--~~~~--~~~~~~h------~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~--~~~~--~~~~~~-~~~V~~l~fs  144 (432)
                      +.  .+..  +..+...      ......+.++|||++|+++. ..++|.+|++.  +|..  +..+.. ....+.++++
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence            87  4432  2222211      12588999999999988776 56789999983  3443  233333 4458999999


Q ss_pred             cCCcEEEEEECC-CeEE
Q psy9319         145 PKQYLLAYACDD-KYDR  160 (432)
Q Consensus       145 pdg~~l~s~s~d-~~I~  160 (432)
                      |+|++|+++..+ +.|.
T Consensus       301 ~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  301 PDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             TTSSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCCeEE
Confidence            999999988754 5533

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.32  E-value=9.6e-05  Score=73.18  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             cccccCCCCcceeeeeeec-CCCceeEEEEeec-CcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC-
Q psy9319           8 PLLGLNPRPSLYQSSVLTD-ISPKQLDFKFKEH-HKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-DALVSLWDAAE-   83 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D-~~~~~~~i~~~d~-~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~iwd~~~-   83 (432)
                      .++.++|++..+.++.... ....+..+.+.+. .....+............++++|++++|+++.. +|+|.++++.. 
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~  119 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD  119 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence            6788899998875554321 1222222222211 123344444434445568999999999988875 88999999986 


Q ss_pred             CeeEEE--Eee-----------CCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCc--EE--EEE--ecCCceEEEEE
Q psy9319          84 LTCIRT--FQR-----------LDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGK--KV--YDI--CIQAATFTVAW  143 (432)
Q Consensus        84 ~~~~~~--~~~-----------h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~--~~--~~~--~~~~~V~~l~f  143 (432)
                      |.....  ...           .....+++.|+|+|+++++.. ....|.+|++....  ..  ..+  ......+.++|
T Consensus       120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f  199 (345)
T PF10282_consen  120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF  199 (345)
T ss_dssp             SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred             cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence            443222  111           124578999999999888775 45689999997655  32  222  35667899999


Q ss_pred             ccCCcEEEEEEC-CCeEEEEe
Q psy9319         144 HPKQYLLAYACD-DKYDRKQD  163 (432)
Q Consensus       144 spdg~~l~s~s~-d~~I~vwd  163 (432)
                      +|+|+++++... ++.|.+++
T Consensus       200 ~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  200 SPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEE
T ss_pred             cCCcCEEEEecCCCCcEEEEe
Confidence            999998877654 56644443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190|consensus

Probab=98.28  E-value=1.8e-06  Score=85.90  Aligned_cols=149  Identities=20%  Similarity=0.119  Sum_probs=104.5

Q ss_pred             CCcceeeeeeecCCCceeEEEEe--ecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEee
Q psy9319          15 RPSLYQSSVLTDISPKQLDFKFK--EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR   92 (432)
Q Consensus        15 ~~~~l~~s~s~D~~~~~~~i~~~--d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~   92 (432)
                      +.+.+ ++++.|.+++.|.++--  ...+..+..+++.|..+|.++.|-.+-++++++  ||-|.+||.--|..+..+..
T Consensus       746 NENSF-iSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d  822 (1034)
T KOG4190|consen  746 NENSF-ISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED  822 (1034)
T ss_pred             cccce-eeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence            33434 78899999999988732  122345788999999999999998887777654  88999999887776553321


Q ss_pred             --CCCCEEEEEEee--CCCEEEEE-eCCCeEEEEeCCCCcEEEEEe------cCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          93 --LDWPVRAISFSH--DGALIASG-SEDLTIDIAHVESGKKVYDIC------IQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        93 --h~~~V~~i~~sp--dg~~l~sg-s~dg~V~vwd~~~~~~~~~~~------~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                        ..+.+..+.--|  +...+..| +...+|+++|.+++.-...+.      ..+.+.+++..|.|+.++.+-.+|+|.+
T Consensus       823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~  902 (1034)
T KOG4190|consen  823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI  902 (1034)
T ss_pred             CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence              122222222222  44444444 678899999999987665553      2245889999999999999999999544


Q ss_pred             EeCCc
Q psy9319         162 QDCGN  166 (432)
Q Consensus       162 wd~~~  166 (432)
                      .|.++
T Consensus       903 LDaR~  907 (1034)
T KOG4190|consen  903 LDARN  907 (1034)
T ss_pred             EecCC
Confidence            44443

>KOG1912|consensus

Probab=98.28  E-value=1.6e-05  Score=82.31  Aligned_cols=149  Identities=9%  Similarity=0.075  Sum_probs=114.4

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC------CC------EEEEEeCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT------GK------YFAVGSKDA   74 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd------g~------~L~sgs~dg   74 (432)
                      -.++.|+|.|-+  +.++.      -.+.+-|..+.+.++++.-|...|+.+.|.|-      +.      .||++.-.|
T Consensus        18 ~~A~Dw~~~GLi--Aygsh------slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   18 RNAADWSPSGLI--AYGSH------SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             ccccccCccceE--EEecC------ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            478889998843  33321      24556688888999999999999999999872      11      466777789


Q ss_pred             eEEEEeCCCCeeEEEEeeCCCCEEEEEEee---CC-CEEEEEeCCCeEEEEeCCCCcEEEEEecCCc-eEEEEEcc-CCc
Q psy9319          75 LVSLWDAAELTCIRTFQRLDWPVRAISFSH---DG-ALIASGSEDLTIDIAHVESGKKVYDICIQAA-TFTVAWHP-KQY  148 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp---dg-~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~-V~~l~fsp-dg~  148 (432)
                      .|.+||...+..+..+..|..++..++|-|   +. ..|+.-....+|.+|+..+|+.+........ ..|+.++| |.+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            999999999988888998999999999987   34 4666667788999999999999988874444 55688888 666


Q ss_pred             EEEEEECCCeEEEEe
Q psy9319         149 LLAYACDDKYDRKQD  163 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd  163 (432)
                      ++...+..|.+-+.+
T Consensus       170 h~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  170 HFCVLGSKGFVLSCK  184 (1062)
T ss_pred             eEEEEccCceEEEEe
Confidence            776666777754443

>KOG2314|consensus

Probab=98.27  E-value=6.5e-06  Score=82.16  Aligned_cols=166  Identities=13%  Similarity=0.142  Sum_probs=114.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-----------CCeEEEEeC
Q psy9319          55 CICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE-----------DLTIDIAHV  123 (432)
Q Consensus        55 V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-----------dg~V~vwd~  123 (432)
                      -+-+.|||.|.+|++-...| |.+|--.+...++.|. |. .|.-+.|||..+||+|-|.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            46789999999999998776 7899887777777776 64 5889999999999998653           157999999


Q ss_pred             CCCcEEEEEec---CCce-EEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccc
Q psy9319         124 ESGKKVYDICI---QAAT-FTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKT  199 (432)
Q Consensus       124 ~~~~~~~~~~~---~~~V-~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~  199 (432)
                      .+|.....+..   +..+ .-+.||.|++++|.-.. .+|.||+...+.++|..+-. +..+.+.+.|.-.+.+..    
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-i~gIr~FswsP~~~llAY----  363 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK-ISGIRDFSWSPTSNLLAY----  363 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC-CccccCcccCCCcceEEE----
Confidence            99998887752   2222 33789999999997765 56899999888777765422 222223222222221111    


Q ss_pred             ccccc-CccccccccceeccCcceeecccchhH
Q psy9319         200 HRERH-QPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       200 h~er~-qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                        |.+ .......+++++.-.-..||..+.+..
T Consensus       364 --wtpe~~~~parvtL~evPs~~~iRt~nlfnV  394 (698)
T KOG2314|consen  364 --WTPETNNIPARVTLMEVPSKREIRTKNLFNV  394 (698)
T ss_pred             --EcccccCCcceEEEEecCccceeeeccceee
Confidence              211 123345577888888888887766553

>KOG1334|consensus

Probab=98.27  E-value=1.2e-06  Score=86.02  Aligned_cols=157  Identities=16%  Similarity=0.177  Sum_probs=120.4

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE-ccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL-KAHPVTCICIEFDP--TGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l-~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd   80 (432)
                      ..||+.+.|+..|..+ +++++|..+-.|++     ..+.....+ .||...|....|-|  +...+++++.||.|++=.
T Consensus       142 ~GcVntV~FN~~Gd~l-~SgSDD~~vv~WdW-----~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  142 KGCVNTVHFNQRGDVL-ASGSDDLQVVVWDW-----VSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             CCccceeeecccCcee-eccCccceEEeehh-----hccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            4688999999999877 88888877655544     455555544 57888888888888  457899999999999877


Q ss_pred             CCC-Cee--EEEEeeCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEeCCCCcEEEEEe----cCC---ceEEEEEccCC-c
Q psy9319          81 AAE-LTC--IRTFQRLDWPVRAISFSHD-GALIASGSEDLTIDIAHVESGKKVYDIC----IQA---ATFTVAWHPKQ-Y  148 (432)
Q Consensus        81 ~~~-~~~--~~~~~~h~~~V~~i~~spd-g~~l~sgs~dg~V~vwd~~~~~~~~~~~----~~~---~V~~l~fspdg-~  148 (432)
                      +.. +.+  ...+..|.++|+-++.-|+ ...|.+++.|+.|.-+|++++.+...+.    ...   ..++++.+|-. .
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            653 333  3455679999999999994 5578899999999999999876544432    222   45678888855 5


Q ss_pred             EEEEEECCCeEEEEeCCc
Q psy9319         149 LLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~  166 (432)
                      .+++|+.|..+++||.+.
T Consensus       296 ~faVgG~dqf~RvYD~R~  313 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRR  313 (559)
T ss_pred             ccccCChhhhhhhhcccc
Confidence            899999999999999754

>KOG1354|consensus

Probab=98.24  E-value=4.2e-06  Score=79.12  Aligned_cols=153  Identities=18%  Similarity=0.230  Sum_probs=102.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC-----CcCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH-----PVTCICIEFDP-TGKYFAVGSKDALVSLW   79 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h-----~~~V~~l~~sp-dg~~L~sgs~dg~I~iw   79 (432)
                      +|+++.++.+...+++  ++|..++.|.+.+-|-  .-.+.-++.+     +.-|++..|+| ....|+-++..|+|++-
T Consensus       166 hiNSIS~NsD~Et~lS--ADdLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  166 HINSISVNSDKETFLS--ADDLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             EeeeeeecCccceEee--ccceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            4678888888877633  3677777776654331  1112223333     35688999999 45778888889999999


Q ss_pred             eCCCCeeE----EE------------EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC-CCCcEEEEEe-c-------
Q psy9319          80 DAAELTCI----RT------------FQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV-ESGKKVYDIC-I-------  134 (432)
Q Consensus        80 d~~~~~~~----~~------------~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~-~~~~~~~~~~-~-------  134 (432)
                      |++.....    ..            |.+-...|..+.|+++|+|+++-+- -+|++||+ ....++.+++ |       
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence            99842211    01            1112247889999999999987643 58999999 3455555553 2       


Q ss_pred             -----CCce---EEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         135 -----QAAT---FTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       135 -----~~~V---~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                           ...|   ..++|+.++.+++||+.....++++
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence                 1223   3589999999999999999855555

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.23  E-value=7.4e-05  Score=69.44  Aligned_cols=117  Identities=14%  Similarity=0.165  Sum_probs=80.0

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee----------------E-----------------------------
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC----------------I-----------------------------   87 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~----------------~-----------------------------   87 (432)
                      -.-.-++||||+.+||.+...|+|++||+....+                +                             
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            3456899999999999999999999999862100                0                             


Q ss_pred             --------------EEEe---eCCCCEEEEEEeeCCCEEEEEeCC----C-------eEEEEeCCCCcEEE---------
Q psy9319          88 --------------RTFQ---RLDWPVRAISFSHDGALIASGSED----L-------TIDIAHVESGKKVY---------  130 (432)
Q Consensus        88 --------------~~~~---~h~~~V~~i~~spdg~~l~sgs~d----g-------~V~vwd~~~~~~~~---------  130 (432)
                                    ++|.   .+...|.++.++|..++|+.|+..    +       -+..|-+-++.+-.         
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence                          0000   023478889999988877766531    1       25666553322100         


Q ss_pred             -----------E------E----ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEE
Q psy9319         131 -----------D------I----CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKV  169 (432)
Q Consensus       131 -----------~------~----~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~v  169 (432)
                                 .      +    .....|..+..||||..||+...+|.|.+|+++.+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence                       0      0    1245688999999999999999999988888876554

>KOG4714|consensus

Probab=98.22  E-value=2.5e-06  Score=77.79  Aligned_cols=73  Identities=16%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             cCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee-EEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCC
Q psy9319          53 VTCICIEFDP-TGKYFAVGSKDALVSLWDAAELTC-IRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        53 ~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~  125 (432)
                      ..|++++-+| ....+++|+.||.+.+||.+.... +..+..|..+++.+-|+| ++..|++++.||.++.||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3489999999 456778899999999999987643 455678999999999999 788999999999999999753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.22  E-value=3.6e-05  Score=75.70  Aligned_cols=121  Identities=13%  Similarity=0.096  Sum_probs=98.1

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs  113 (432)
                      +-+++..++ .+..+...-+.|.++..+|+|++++.+.....|.+.|+.+|.....=....+-|+.+.|||+++++|-+-
T Consensus       384 l~iyd~~~~-e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf  462 (668)
T COG4946         384 LGIYDKDGG-EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF  462 (668)
T ss_pred             EEEEecCCc-eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence            334555444 4455666778999999999999999999999999999999987655555678899999999999999876


Q ss_pred             CCC----eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC
Q psy9319         114 EDL----TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus       114 ~dg----~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      -+|    .|+++|+.+++.....+..+.=.+.+|+|+|++|..-+.
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            554    699999999988777666666678899999999887664

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.21  E-value=5.3e-05  Score=76.76  Aligned_cols=74  Identities=20%  Similarity=0.382  Sum_probs=63.7

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~  125 (432)
                      .....|.|++++|+...|+.|+.||+|.+||...+..  .+....-.++.++|+|+|..+++|+.-|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            3567899999999999999999999999999986643  3334556788999999999999999999999999853

>KOG1409|consensus

Probab=98.21  E-value=1.9e-05  Score=74.78  Aligned_cols=157  Identities=12%  Similarity=0.046  Sum_probs=108.4

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC------
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA------   81 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~------   81 (432)
                      .++.+++....+ ..+...+++..+.+.. |.......+....|...|..+-|+-...++++.+.|..+.--..      
T Consensus        72 ~~~~y~~e~~~L-~vg~~ngtvtefs~se-dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   72 SAMEYVSESRRL-YVGQDNGTVTEFALSE-DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             eEeeeeccceEE-EEEEecceEEEEEhhh-hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc
Confidence            444444444443 3444444443333321 22334455666788888888888877777777776643221100      


Q ss_pred             -----------------------------------CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          82 -----------------------------------AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        82 -----------------------------------~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                                                         ..-..+.++.+|.+.+.+++|.|....|.+|..|..+.+||+-..
T Consensus       150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence                                               112345677889999999999999999999999999999998655


Q ss_pred             cEE--EEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         127 KKV--YDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       127 ~~~--~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      ..+  ....|...|..+...+....+++++.||.|-+||.+.
T Consensus       230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            443  3345888899999888889999999999988888754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.0002  Score=68.53  Aligned_cols=159  Identities=12%  Similarity=0.055  Sum_probs=103.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee--EEEccCCcCEEEEEEcCCCCEEEEEeCC-CeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ--NILKAHPVTCICIEFDPTGKYFAVGSKD-ALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~--~~l~~h~~~V~~l~~spdg~~L~sgs~d-g~I~iwd~   81 (432)
                      ...+.++|+|+...+.+....+..-.+-. .-||..+|...  .....-..+-+.++++++|+++++++.. |.|.++-+
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaa-y~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAA-YRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEE-EEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            34477899999977755544433222222 23454445432  2222222333788999999999888764 78999988


Q ss_pred             CC-Cee--EEEEeeCCCC----------EEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEEE----EecCCceEEEEE
Q psy9319          82 AE-LTC--IRTFQRLDWP----------VRAISFSHDGALIASGS-EDLTIDIAHVESGKKVYD----ICIQAATFTVAW  143 (432)
Q Consensus        82 ~~-~~~--~~~~~~h~~~----------V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~~----~~~~~~V~~l~f  143 (432)
                      .. |..  ...+..|.+.          +.+..++|++++|++++ .--.|.+|++..|.....    +......+.|.|
T Consensus       119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F  198 (346)
T COG2706         119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF  198 (346)
T ss_pred             ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE
Confidence            64 433  2223346555          88999999999999887 334799999987765332    235667899999


Q ss_pred             ccCCcEEEEEE-CCCeEEEEeC
Q psy9319         144 HPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       144 spdg~~l~s~s-~d~~I~vwd~  164 (432)
                      +|++++.++.+ -+++|-+|..
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y  220 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEY  220 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEE
Confidence            99999887765 4677444443

>KOG1334|consensus

Probab=98.19  E-value=3.4e-06  Score=82.95  Aligned_cols=120  Identities=19%  Similarity=0.177  Sum_probs=97.6

Q ss_pred             eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe-eCCCCEEEEEEee--CCCEEEEEeCCCeEEE
Q psy9319          44 EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSH--DGALIASGSEDLTIDI  120 (432)
Q Consensus        44 ~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~i~~sp--dg~~l~sgs~dg~V~v  120 (432)
                      ....|.+|.+.|..+.|+..|..|++||.|..|.+||...+.....|. +|...|....|-|  +.+.+++++.||.|++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            345678899999999999999999999999999999999888776664 7888899999988  4568999999999998


Q ss_pred             EeCCC-CcEEEEE---ecCCceEEEEEccCC-cEEEEEECCCeEEEEe
Q psy9319         121 AHVES-GKKVYDI---CIQAATFTVAWHPKQ-YLLAYACDDKYDRKQD  163 (432)
Q Consensus       121 wd~~~-~~~~~~~---~~~~~V~~l~fspdg-~~l~s~s~d~~I~vwd  163 (432)
                      =.+.. +.+..+.   .|.++|..++.-|+. .-|.+++.|+.+.-+|
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~D  261 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHID  261 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeee
Confidence            77653 3333222   399999999999976 5688899999844333

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.13  E-value=0.00013  Score=74.04  Aligned_cols=108  Identities=16%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             EEEEEcC-CCCEEEEE----eCCCe----EEEEeCCCCee--EE-EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          56 ICIEFDP-TGKYFAVG----SKDAL----VSLWDAAELTC--IR-TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        56 ~~l~~sp-dg~~L~sg----s~dg~----I~iwd~~~~~~--~~-~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                      .++.||- ++..+.+.    +.+|.    -++|+....+.  +. +-......|.+++++|+...++.|+.||+|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            5777877 44555443    33443    34566543321  11 11247789999999999999999999999999998


Q ss_pred             CCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         124 ESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       124 ~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ..+..... ...-.+..++|||+|.++++|+..|.+.+||+
T Consensus       289 ~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  289 TRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             CCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            77744332 34555788999999999999999999666664

>KOG1064|consensus

Probab=98.12  E-value=3.1e-06  Score=94.18  Aligned_cols=142  Identities=11%  Similarity=0.094  Sum_probs=102.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE---eCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG---SKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg---s~dg~I~iwd~   81 (432)
                      .-|+.+.|+-.|+.+ ..+-.|+     ++.+|... .+.....+.|......++|-.  ..++++   +.++.+.+||.
T Consensus      2252 s~vtr~~f~~qGnk~-~i~d~dg-----~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKF-GIVDGDG-----DLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred             chhhhhhhcccCCce-eeeccCC-----ceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhc
Confidence            345667777777766 3333344     44555443 466667778888888888864  556665   44678999997


Q ss_pred             CC---CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          82 AE---LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        82 ~~---~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .-   ..+++  ..|.+.++++++-|..++|++|+.+|.|++||++..+..+.+..        ++ ...++++|+..|.
T Consensus      2323 l~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2323 LLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred             ccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccc
Confidence            52   22344  78999999999999999999999999999999987776554432        55 5678999999999


Q ss_pred             EEEEeCCc
Q psy9319         159 DRKQDCGN  166 (432)
Q Consensus       159 I~vwd~~~  166 (432)
                      |+||++..
T Consensus      2392 ikIw~~s~ 2399 (2439)
T KOG1064|consen 2392 IKIWRLSE 2399 (2439)
T ss_pred             eEEEEccc
Confidence            55444433

>KOG2041|consensus

Probab=98.12  E-value=3.7e-06  Score=85.98  Aligned_cols=157  Identities=13%  Similarity=0.122  Sum_probs=113.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEe----------ecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeE
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFK----------EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALV   76 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~----------d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I   76 (432)
                      .+|+.|+-....+ +.+..|+-.....+-.-          ..++...-+++.||.+.|.-+.|+.+.+.|.++..+|.|
T Consensus        17 L~c~~WNke~gyI-AcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   17 LHCAEWNKESGYI-ACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             EEEEEEcccCCeE-EeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            3889999887766 66667766554433211          112223346789999999999999999999999999999


Q ss_pred             EEEeCCCCeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE
Q psy9319          77 SLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        77 ~iwd~~~~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s  154 (432)
                      .+|-+..|.....+.  ...+.|.+++|+.||..++..-.||.|.+=.+........--.......+.|++|...++.+-
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~  175 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKK  175 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhh
Confidence            999998877644333  245679999999999999999999999887765443221111222345688999888777777


Q ss_pred             CCCeEEEEeC
Q psy9319         155 DDKYDRKQDC  164 (432)
Q Consensus       155 ~d~~I~vwd~  164 (432)
                      .+|.+.+||.
T Consensus       176 ange~hlydn  185 (1189)
T KOG2041|consen  176 ANGETHLYDN  185 (1189)
T ss_pred             cCCcEEEecc
Confidence            7777777774

>KOG2695|consensus

Probab=98.12  E-value=9.9e-06  Score=76.69  Aligned_cols=131  Identities=11%  Similarity=0.085  Sum_probs=95.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..|.++.|...++++ ..+...+.+-..|++.-+-.++.+.+.+ -|...|+|+..-. ++.+|++.+.+|.|.+||.+.
T Consensus       253 sDVfAlQf~~s~nLv-~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLV-FNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             hhHHHHHhcccCCee-EecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            456778888878777 4444555555555554333334455554 4778899988766 788999999999999999986


Q ss_pred             Cee---EEEEeeCCCCEEEE--EEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCc
Q psy9319          84 LTC---IRTFQRLDWPVRAI--SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAA  137 (432)
Q Consensus        84 ~~~---~~~~~~h~~~V~~i--~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~  137 (432)
                      -++   +.++.+|...-.-+  ...+....+++++.|...+||.+.+|..+.+++.+..
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            666   88999986543333  3455667888899999999999999999998874433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.04  E-value=0.00053  Score=64.31  Aligned_cols=147  Identities=16%  Similarity=0.065  Sum_probs=96.5

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCce--eEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQ--LDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~--~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iwd   80 (432)
                      .+..+.+.++|++.+++...........  ..+..++.. ++......+ -...+.++|+|+++.|+ +-+..+.|..++
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecccccceeEEEe
Confidence            4556889999999977443333322222  556666655 444333333 45578999999998775 567778899998


Q ss_pred             CCCC-e-e--EEEE---eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC-CceEEEEEc-cCCcEEE
Q psy9319          81 AAEL-T-C--IRTF---QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ-AATFTVAWH-PKQYLLA  151 (432)
Q Consensus        81 ~~~~-~-~--~~~~---~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~-~~V~~l~fs-pdg~~l~  151 (432)
                      +... . .  ...+   ....+..-.+++.++|+++++....+.|.++|.. |+.+..+..+ ..+++++|. |+...|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence            8532 1 1  1222   2222347889999999988887789999999987 8888888744 679999994 6655555


Q ss_pred             EE
Q psy9319         152 YA  153 (432)
Q Consensus       152 s~  153 (432)
                      ..
T Consensus       242 vT  243 (246)
T PF08450_consen  242 VT  243 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066|consensus

Probab=98.02  E-value=8.8e-05  Score=77.32  Aligned_cols=108  Identities=19%  Similarity=0.248  Sum_probs=79.9

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeC-----CCEEEEEeCCCeEEEEeCC---CCcEEEEE
Q psy9319          61 DPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD-----GALIASGSEDLTIDIAHVE---SGKKVYDI  132 (432)
Q Consensus        61 spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spd-----g~~l~sgs~dg~V~vwd~~---~~~~~~~~  132 (432)
                      ..+|.+++|||.||+|.|..+.+....+++. ...++.+++++|+     .+.+++|+.-| +.++.-.   ....+..-
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            4479999999999999999998888777665 5578999999997     56788888888 6665421   12222222


Q ss_pred             ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         133 CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       133 ~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      ...++|.++.|.  |+++|.++.+|         +++||+.+++.+..+
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~G---------v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDG---------VKVYDTPTRQRLTNI  195 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCC---------cEEEeccccceeecc
Confidence            377889999996  89999999888         456665555544433

>KOG4714|consensus

Probab=98.00  E-value=9.9e-06  Score=73.99  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             eEEEEeCCCCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEE--ecCCceEEEEEcc-CCcEE
Q psy9319          75 LVSLWDAAELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDI--CIQAATFTVAWHP-KQYLL  150 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~--~~~~~V~~l~fsp-dg~~l  150 (432)
                      ..+.|++........-......|.+++-+| +...+++|+.||.+-+||.++......+  .|..+++.+-|+| ++..|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            455666653222111111223499999999 5567788889999999999987544333  3899999999999 56899


Q ss_pred             EEEECCCeEEEEeCC
Q psy9319         151 AYACDDKYDRKQDCG  165 (432)
Q Consensus       151 ~s~s~d~~I~vwd~~  165 (432)
                      ++++.||.+.-||..
T Consensus       240 ft~sedGslw~wdas  254 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAS  254 (319)
T ss_pred             eEecCCCcEEEEcCC
Confidence            999999995555543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.00  E-value=0.00083  Score=64.17  Aligned_cols=160  Identities=11%  Similarity=0.077  Sum_probs=111.4

Q ss_pred             ccccCCCCcceeeeeeecCCCceeEEEEeecC-cceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------------
Q psy9319           9 LLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH-KLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------------   71 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~-~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------------   71 (432)
                      ...|+|++.+++++ -.|.....+.|-+||.. +...+..+..|.-.-..+.+.|||..|+.+.                
T Consensus        55 Hg~fs~dG~~LytT-End~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   55 HGVFSPDGRLLYTT-ENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CEEEcCCCCEEEEe-ccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence            45789999988444 56666777889999988 6777888888887777889999998777653                


Q ss_pred             --CCCeEEEEeCCCCeeEEE--E--eeCCCCEEEEEEeeCCCEEEEEeCCC-------eEEEEeCCCCcEEEEEe-----
Q psy9319          72 --KDALVSLWDAAELTCIRT--F--QRLDWPVRAISFSHDGALIASGSEDL-------TIDIAHVESGKKVYDIC-----  133 (432)
Q Consensus        72 --~dg~I~iwd~~~~~~~~~--~--~~h~~~V~~i~~spdg~~l~sgs~dg-------~V~vwd~~~~~~~~~~~-----  133 (432)
                        .+.++.+.|..+|..+..  +  ..|...|+.+++.++|..++.+-..|       -|.+++.  +..+..+.     
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~  211 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQ  211 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHH
Confidence              234577778888887766  4  23777899999999987666543332       2444443  33232221     


Q ss_pred             ---cCCceEEEEEccCCcEEEEEE-CCCeEEEEeCCceEEeecCCCceee
Q psy9319         134 ---IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       134 ---~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~  179 (432)
                         ..+-+-+|+++++|.+++++| ..+.        +.+||..+|.++.
T Consensus       212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~--------~~~~d~~tg~~~~  253 (305)
T PF07433_consen  212 WRRLNGYIGSIAADRDGRLIAVTSPRGGR--------VAVWDAATGRLLG  253 (305)
T ss_pred             HHhhCCceEEEEEeCCCCEEEEECCCCCE--------EEEEECCCCCEee
Confidence               345688999999998776555 5566        5566666665544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.99  E-value=0.00046  Score=77.78  Aligned_cols=109  Identities=14%  Similarity=0.044  Sum_probs=74.3

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeC---------------CCCEEEEEEeeCCCEEE-EEeCCCe
Q psy9319          55 CICIEFDP-TGKYFAVGSKDALVSLWDAAELTCIRTFQRL---------------DWPVRAISFSHDGALIA-SGSEDLT  117 (432)
Q Consensus        55 V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h---------------~~~V~~i~~spdg~~l~-sgs~dg~  117 (432)
                      ...++|+| ++.++++.+.++.|++||..++... .+.+.               -...+.++|+|++..|+ +-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            35789999 5667777788899999999876542 22211               12356799999998555 4456799


Q ss_pred             EEEEeCCCCcEEEEEe--------------c--------CCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         118 IDIAHVESGKKVYDIC--------------I--------QAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       118 V~vwd~~~~~~~~~~~--------------~--------~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      |++||+.++.......              .        ......++|+|+|.++++-+.++.|++||.
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~  832 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDP  832 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEEC
Confidence            9999998765321110              0        012457889999998888888888544444

>KOG2314|consensus

Probab=97.98  E-value=3.6e-05  Score=76.99  Aligned_cols=138  Identities=20%  Similarity=0.285  Sum_probs=97.9

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-----------CeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-----------ALV   76 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-----------g~I   76 (432)
                      .-+.|||.|..+ ++      .+.--|.+|--.+...++.+ .|. .|.-+.|||+.++|++-|..           ..+
T Consensus       214 tyv~wSP~GTYL-~t------~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  214 TYVRWSPKGTYL-VT------FHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             eeEEecCCceEE-EE------EeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence            356799999877 55      35556677755555555444 343 47889999999999986532           479


Q ss_pred             EEEeCCCCeeEEEEee--CCCCEE-EEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEE
Q psy9319          77 SLWDAAELTCIRTFQR--LDWPVR-AISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        77 ~iwd~~~~~~~~~~~~--h~~~V~-~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s  152 (432)
                      +|||+.+|.....|..  ....++ -+.||.|+.++|....+ +|.|++..+-..+..-. ...+|....|+|.+.+||.
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            9999999998877765  222333 35899999999987764 68999876643333222 4567889999999988886


Q ss_pred             EEC
Q psy9319         153 ACD  155 (432)
Q Consensus       153 ~s~  155 (432)
                      -+.
T Consensus       364 wtp  366 (698)
T KOG2314|consen  364 WTP  366 (698)
T ss_pred             Ecc
Confidence            543

>KOG0309|consensus

Probab=97.96  E-value=5e-05  Score=78.27  Aligned_cols=162  Identities=13%  Similarity=0.141  Sum_probs=106.6

Q ss_pred             CEEEEEEcCCC---CEEEEEeCCCeEEEEeCCC---CeeEEEEeeCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEeCCCC
Q psy9319          54 TCICIEFDPTG---KYFAVGSKDALVSLWDAAE---LTCIRTFQRLDWPVRAISFSHD-GALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        54 ~V~~l~~spdg---~~L~sgs~dg~I~iwd~~~---~~~~~~~~~h~~~V~~i~~spd-g~~l~sgs~dg~V~vwd~~~~  126 (432)
                      .|-.+.|+|..   .++++.+ ...-.+|++..   ......+.+|...|+.+.|.|+ ...+++++.|..|..||+++.
T Consensus        69 ~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            36678888854   3455544 44556898763   2335567799999999999994 458899999999999999986


Q ss_pred             c-EEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCC-ceeeeecCCCchhhhHHhhhcccccccc
Q psy9319         127 K-KVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE-PIKKRKRGGTMSSWVKAAKVNQKTHRER  203 (432)
Q Consensus       127 ~-~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~-~~~~~~~g~~mss~~~a~~~~~~~h~er  203 (432)
                      . ++..+. .......+.|+-....+.+.+....        +.+||++.| ..+..+.+|..+.-.....+  .     
T Consensus       148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~--------i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr--~-----  212 (1081)
T KOG0309|consen  148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND--------IFVWDLRKGSTPLCSLKGHVSSVNSIDFNR--F-----  212 (1081)
T ss_pred             CcceeeeecccccCceeeecccCcchhhhccCCc--------eEEEeccCCCcceEEecccceeeehHHHhh--h-----
Confidence            4 444443 4445667899875444444455555        677777644 56677777543322222211  1     


Q ss_pred             cCccccccccceeccCcceeecccchhHHHHHHH
Q psy9319         204 HQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQI  237 (432)
Q Consensus       204 ~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~  237 (432)
                            ...-++....|.++..|||.+.....+.
T Consensus       213 ------~~s~~~s~~~d~tvkfw~y~kSt~e~~~  240 (1081)
T KOG0309|consen  213 ------KYSEIMSSSNDGTVKFWDYSKSTTESKR  240 (1081)
T ss_pred             ------hhhhhcccCCCCceeeecccccccccce
Confidence                  1123677888999999999986555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.93  E-value=0.00033  Score=72.79  Aligned_cols=132  Identities=13%  Similarity=0.080  Sum_probs=88.6

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------------------------------------C
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------------------------------------K   72 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------------------------------------~   72 (432)
                      .+.+.|..+.+...++.-.. ....++++|+|.++++.+                                        .
T Consensus       216 ~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~  294 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG  294 (635)
T ss_pred             EEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC
Confidence            34455666665555443322 334567777777776664                                        1


Q ss_pred             CCeEEEEeCCC----CeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcE------------EEEEecC
Q psy9319          73 DALVSLWDAAE----LTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKK------------VYDICIQ  135 (432)
Q Consensus        73 dg~I~iwd~~~----~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~------------~~~~~~~  135 (432)
                      ++.|.+.|..+    +..+..+..-....+.+++||||+++++++ .+++|.|.|+.+...            +......
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            24577777776    323333333455678999999999988776 589999999987542            3444445


Q ss_pred             CceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         136 AATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       136 ~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      ......+|+++|....|...|..|..|++.
T Consensus       375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             CCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            556678999999988888899997777764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.92  E-value=9.4e-05  Score=74.92  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-A--LVSLWDAAEL   84 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-g--~I~iwd~~~~   84 (432)
                      ..-.|+|++..++.+...|+..   ++++.|..... ...+....+.-+.-.|+|||+.++..++. |  .|.+++.+.+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~---~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSP---DIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCc---cEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            3456999999998888888666   45555665555 33455555555577899999999877654 3  4777777765


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-Ce--EEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSED-LT--IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-g~--V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      .. ..+....+.-....|||||.+|+..+.. |.  |.+.|+.++..+..+..........|.|+|..++..+..+
T Consensus       317 ~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         317 QV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             ce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            54 4444344433478899999999987743 43  7777777776666666666667788899998877765443

>KOG2041|consensus

Probab=97.90  E-value=4.8e-05  Score=78.10  Aligned_cols=119  Identities=13%  Similarity=0.240  Sum_probs=92.6

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---------------eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCe
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELT---------------CIRTFQRLDWPVRAISFSHDGALIASGSEDLT  117 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~---------------~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~  117 (432)
                      ....|++|+....++++|+.||.+++.-+.+..               .-+++.||.+.|.-+.|+...+.|-|...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            456899999999999999999999999765321               13466799999999999999999999999999


Q ss_pred             EEEEeCCCCcEEEEE---ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEee
Q psy9319         118 IDIAHVESGKKVYDI---CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFG  171 (432)
Q Consensus       118 V~vwd~~~~~~~~~~---~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd  171 (432)
                      |.+|-+-.|.-...+   ...+.|.+++|..+|..++..-.||.|.+=.+.--++|.
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg  151 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG  151 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc
Confidence            999999877543322   256778999999999887777777776554443334443

>KOG1354|consensus

Probab=97.90  E-value=3.8e-05  Score=72.78  Aligned_cols=120  Identities=15%  Similarity=0.240  Sum_probs=85.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEe---ecC--------cceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFK---EHH--------KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA   74 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~---d~~--------~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg   74 (432)
                      .|.+..|+|..+.+++..+.-++++..+.+.-   |..        .+....-+.+--..|..+.|+++|+++++-. --
T Consensus       215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yl  293 (433)
T KOG1354|consen  215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YL  293 (433)
T ss_pred             HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cc
Confidence            35778899999888888888888888877721   111        1111111222335788999999999998765 35


Q ss_pred             eEEEEeCC-CCeeEEEEeeCCC---------------CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          75 LVSLWDAA-ELTCIRTFQRLDW---------------PVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        75 ~I~iwd~~-~~~~~~~~~~h~~---------------~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                      +|.+||+. ...++.++.-|..               .-..++|+-++.+++|||..+.++++++..|
T Consensus       294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            89999994 4556666665531               2346889999999999999999999996544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.87  E-value=0.00041  Score=69.04  Aligned_cols=143  Identities=17%  Similarity=0.072  Sum_probs=93.8

Q ss_pred             ccccCCCCcceeeeeeecCCC-----ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE--eCCCeEEEEeC
Q psy9319           9 LLGLNPRPSLYQSSVLTDISP-----KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG--SKDALVSLWDA   81 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~-----~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg--s~dg~I~iwd~   81 (432)
                      .+.|++.+..+++-...+...     ..-++++.+.. ...+....+-.++|..++|+|.++.+++.  -.+..+.++|+
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence            356777777664443333211     11344554443 23333333557899999999988776554  46788999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ... ..  +......-..+.|||.+++++.++.|   |.+-+||..+.-.+..-.......-+.|+|||.++.+...
T Consensus       306 r~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~t  379 (561)
T COG5354         306 RGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTT  379 (561)
T ss_pred             ccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCC
Confidence            854 33  33345556778899999999998866   6799999866544442223444566889999999887754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.00047  Score=69.86  Aligned_cols=146  Identities=15%  Similarity=0.117  Sum_probs=93.3

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-eCCCe--EEEEeCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-SKDAL--VSLWDAAE   83 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s~dg~--I~iwd~~~   83 (432)
                      +..-.|+|++..+... +....-. +.+.+++..++.....+. ..+.-...+|||||+.|+.+ ..||.  |.+.|+.+
T Consensus       195 ~~~p~ws~~~~~~~y~-~f~~~~~-~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         195 ILTPAWSPDGKKLAYV-SFELGGC-PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             eeccccCcCCCceEEE-EEecCCC-ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            3445677887766322 2222111 567777877776655544 22333467899999887654 45554  66678876


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-C--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSED-L--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-g--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      +. ...+....+.-..-.|+|||++|+..+.. |  .|.+.|+..+.........+.-....|+|||.+++..+..
T Consensus       272 ~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         272 KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence            65 33455444444577899999999887643 3  5778888777653333333333378999999999988753

>KOG1645|consensus

Probab=97.87  E-value=7.1e-05  Score=72.34  Aligned_cols=93  Identities=12%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeC-CCEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD-GALIAS  111 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spd-g~~l~s  111 (432)
                      +.+.+..+.+....+.+|...|..++|||..+ ++..++.+..|.|.|+.+..++..+..+ ..+++++|.-| ..+|+.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            55556666777777888999999999999765 7889999999999999999888888877 78999999985 457888


Q ss_pred             EeCCCeEEEEeCCCCc
Q psy9319         112 GSEDLTIDIAHVESGK  127 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~  127 (432)
                      |..+|.|.|||++..+
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8899999999998754

>KOG4190|consensus

Probab=97.85  E-value=2e-05  Score=78.61  Aligned_cols=120  Identities=21%  Similarity=0.182  Sum_probs=86.6

Q ss_pred             eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-------CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC
Q psy9319          44 EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA-------ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDL  116 (432)
Q Consensus        44 ~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~-------~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg  116 (432)
                      .++.+.||...|..++--.+.+-+++++.|.+|++|.+.       +..|..++..|..+|.++.|-.+-++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            356788999999888766667789999999999999886       344677888999999999999988887755  78


Q ss_pred             eEEEEeCCCCcEEEEEe---cCCceEEEEEcc--CCcEEEEE-ECCCeEEEEeCC
Q psy9319         117 TIDIAHVESGKKVYDIC---IQAATFTVAWHP--KQYLLAYA-CDDKYDRKQDCG  165 (432)
Q Consensus       117 ~V~vwd~~~~~~~~~~~---~~~~V~~l~fsp--dg~~l~s~-s~d~~I~vwd~~  165 (432)
                      .|.+||.--|..+....   ..+.+..+..-|  +..+++.| +...+|.++|.+
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR  859 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR  859 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc
Confidence            89999988887766442   222233333333  34444444 667775555543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.83  E-value=0.0015  Score=64.39  Aligned_cols=105  Identities=10%  Similarity=0.037  Sum_probs=83.2

Q ss_pred             eEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCeeEEEEeeCC-------
Q psy9319          32 LDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK----------DALVSLWDAAELTCIRTFQRLD-------   94 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~----------dg~I~iwd~~~~~~~~~~~~h~-------   94 (432)
                      ..+.+.|..+++.+.++.....+-. + +||||+.|+.++.          +..|.+||+.+++.+..+.-..       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            6788889999999888886555543 4 8999998877655          6799999999999988776321       


Q ss_pred             CCEEEEEEeeCCCEEEEEe-C-CCeEEEEeCCCCcEEEEEecCCce
Q psy9319          95 WPVRAISFSHDGALIASGS-E-DLTIDIAHVESGKKVYDICIQAAT  138 (432)
Q Consensus        95 ~~V~~i~~spdg~~l~sgs-~-dg~V~vwd~~~~~~~~~~~~~~~V  138 (432)
                      .....+++||||++|+... . +..|.+.|+.+++.+..+..+...
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~  150 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY  150 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc
Confidence            2344789999999998776 3 789999999999999988754433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532|consensus

Probab=97.82  E-value=0.00065  Score=62.64  Aligned_cols=146  Identities=14%  Similarity=0.078  Sum_probs=91.2

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEE-EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNI-LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      ++.+.++|++.++ ++..+...+  +-+.+ |-+....+.+ ...-+..-.+..|+.....+|+++.||++.|||++...
T Consensus       161 ~ns~~~snd~~~~-~~Vgds~~V--f~y~i-d~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  161 QNSLHYSNDPSWG-SSVGDSRRV--FRYAI-DDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eeeeEEcCCCceE-EEecCCCcc--eEEEe-CCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            5778888988876 333332222  22222 2222223332 22333445688899999999999999999999998643


Q ss_pred             eEEE-----EeeCCCCEEEEEEeeCCC--EEEEEeCCCeEEEEeCCCCcEEEEEe--------cC-CceEEEEEccCCcE
Q psy9319          86 CIRT-----FQRLDWPVRAISFSHDGA--LIASGSEDLTIDIAHVESGKKVYDIC--------IQ-AATFTVAWHPKQYL  149 (432)
Q Consensus        86 ~~~~-----~~~h~~~V~~i~~spdg~--~l~sgs~dg~V~vwd~~~~~~~~~~~--------~~-~~V~~l~fspdg~~  149 (432)
                      ..+.     -..|.+.++.+.|+|-|.  +|...-.-+.+.+.|++++.....+.        |. ..|....|+.++.-
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence            3222     234889999999998554  45555566789999999987666553        11 22555666665544


Q ss_pred             EEEEECC
Q psy9319         150 LAYACDD  156 (432)
Q Consensus       150 l~s~s~d  156 (432)
                      +.+.+.+
T Consensus       317 ~~v~~e~  323 (344)
T KOG4532|consen  317 NDVKNEL  323 (344)
T ss_pred             cccccch
Confidence            4444433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.81  E-value=0.0007  Score=66.63  Aligned_cols=90  Identities=13%  Similarity=0.122  Sum_probs=70.0

Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC----------CCeEEEEeCCCCcEEEEEecCCc------
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE----------DLTIDIAHVESGKKVYDICIQAA------  137 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~----------dg~V~vwd~~~~~~~~~~~~~~~------  137 (432)
                      ++|.+.|..+++.+.++.....+- .+ +||||+.|+.++.          +..|.+||..+.+.+..+..+..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            799999999999888887554443 35 9999998887766          68999999999999998874333      


Q ss_pred             --eEEEEEccCCcEEEEEE-C-CCeEEEEeCC
Q psy9319         138 --TFTVAWHPKQYLLAYAC-D-DKYDRKQDCG  165 (432)
Q Consensus       138 --V~~l~fspdg~~l~s~s-~-d~~I~vwd~~  165 (432)
                        ...++++|||++|++.. . +..|.++|+.
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~  136 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE  136 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence              23789999999998776 3 5675555553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1832|consensus

Probab=97.75  E-value=2.5e-05  Score=81.84  Aligned_cols=130  Identities=12%  Similarity=0.113  Sum_probs=98.7

Q ss_pred             ceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC--eEE
Q psy9319          42 LEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDL--TID  119 (432)
Q Consensus        42 ~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg--~V~  119 (432)
                      .+...++..|+...+|++|+.+.++|+.|+..|.|++|++.+|......++|..+|+.+.-+.||..+++.+...  -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            345667788999999999999999999999999999999999999999999999999999888999887766432  467


Q ss_pred             EEeCCC-CcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         120 IAHVES-GKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       120 vwd~~~-~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      +|++.+ +...+++   ..-.++.|+.....-+.|+....        ..+||+.++..+.++.
T Consensus      1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~--------a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADD--------ALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             HhccccccCccccc---cccceeehhhhHHHHHhcccccc--------eEEEecccCcHHHHhc
Confidence            899754 3333333   23456788776544444444333        6778888877766643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.68  E-value=0.0047  Score=59.08  Aligned_cols=149  Identities=12%  Similarity=0.002  Sum_probs=106.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCE--EEEEEcCCCCEEEEEe-----CCCeEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTC--ICIEFDPTGKYFAVGS-----KDALVS   77 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V--~~l~~spdg~~L~sgs-----~dg~I~   77 (432)
                      .-...++.+|.....++.+-..++    -..++|..+++....+....+..  -.-+|||||++|++.=     ..|.|-
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~----~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGT----FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCc----EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence            444677889977665444433222    24567888888887776543332  1457999999998863     347899


Q ss_pred             EEeCC-CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC------------------CeEEEEeCCCCcEEEEEe-----
Q psy9319          78 LWDAA-ELTCIRTFQRLDWPVRAISFSHDGALIASGSED------------------LTIDIAHVESGKKVYDIC-----  133 (432)
Q Consensus        78 iwd~~-~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d------------------g~V~vwd~~~~~~~~~~~-----  133 (432)
                      |||.. +...+..|..|.-....+.+.|||..|+.+...                  .++...|..+|+.+....     
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            99998 677788898888888899999999877765321                  246667888888777632     


Q ss_pred             cCCceEEEEEccCCcEEEEEECCC
Q psy9319         134 IQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       134 ~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      |.-.|..++++++|..++..-..+
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg  184 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQG  184 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCC
Confidence            556799999999988766554443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.63  E-value=0.0013  Score=72.88  Aligned_cols=154  Identities=12%  Similarity=0.088  Sum_probs=102.4

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK---DALVSLWDAAE   83 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~---dg~I~iwd~~~   83 (432)
                      -..+.|..||.+++++...........+++|+-. |....+-+.-.+--.+++|.|.|++||+...   ...|.+|.-+ 
T Consensus       212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-  289 (928)
T PF04762_consen  212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-  289 (928)
T ss_pred             ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-
Confidence            3567899999988555442222236788999854 7666666555555668999999999998754   3456677644 


Q ss_pred             CeeEEEEe----eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE--EEEEe--cCCceEEEEEccCC-cEEEEEE
Q psy9319          84 LTCIRTFQ----RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK--VYDIC--IQAATFTVAWHPKQ-YLLAYAC  154 (432)
Q Consensus        84 ~~~~~~~~----~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~--~~~~~--~~~~V~~l~fspdg-~~l~s~s  154 (432)
                      |-....|.    .....|..+.|++|+..||....|. |.+|-..+..-  ...+.  ....+..+.|+|.. ..|...+
T Consensus       290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t  368 (928)
T PF04762_consen  290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT  368 (928)
T ss_pred             CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence            33322332    3456799999999999999987665 99998866531  22222  33445569999954 4566666


Q ss_pred             CCCeEEEEe
Q psy9319         155 DDKYDRKQD  163 (432)
Q Consensus       155 ~d~~I~vwd  163 (432)
                      .++.+..++
T Consensus       369 ~~g~~~~~~  377 (928)
T PF04762_consen  369 SNGQYEIYD  377 (928)
T ss_pred             cCCcEEEEE
Confidence            656655444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.63  E-value=0.0021  Score=59.50  Aligned_cols=138  Identities=14%  Similarity=0.056  Sum_probs=87.4

Q ss_pred             EEEEeecCcceeeEEEccC--CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA  110 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~  110 (432)
                      .+..+|..+|+.+....--  .....+. ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..++
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccc
Confidence            4566777788887776431  1222222 233566777888999999999999998877764 22222211 23455677


Q ss_pred             EEeCCCeEEEEeCCCCcEEEEE-ecC----CceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         111 SGSEDLTIDIAHVESGKKVYDI-CIQ----AATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       111 sgs~dg~V~vwd~~~~~~~~~~-~~~----~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      .++.++.|..+|..+|+.+... ...    ..........++..++++..++.        +..+|+.+|..+-..
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK--------LVALDPKTGKLLWKY  148 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE--------EEEEETTTTEEEEEE
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc--------EEEEecCCCcEEEEe
Confidence            7778889999999999999884 322    11222333334788888888888        455555555544433

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.62  E-value=0.0094  Score=55.83  Aligned_cols=143  Identities=14%  Similarity=0.028  Sum_probs=87.6

Q ss_pred             cccCC-CCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319          10 LGLNP-RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD-PTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus        10 l~~~p-~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~s-pdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      ..|.+ ++.++ .+-     +....|..++..++.... +....  ...+++. ++|.+++ +... .+.++|+.++...
T Consensus         5 p~~d~~~g~l~-~~D-----~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~   73 (246)
T PF08450_consen    5 PVWDPRDGRLY-WVD-----IPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVT   73 (246)
T ss_dssp             EEEETTTTEEE-EEE-----TTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEE
T ss_pred             eEEECCCCEEE-EEE-----cCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEE
Confidence            45676 55554 332     233456667766664432 22222  5666777 6665544 4444 4566699888654


Q ss_pred             EEEee-----CCCCEEEEEEeeCCCEEEEEeCC--------CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEE-
Q psy9319          88 RTFQR-----LDWPVRAISFSHDGALIASGSED--------LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA-  153 (432)
Q Consensus        88 ~~~~~-----h~~~V~~i~~spdg~~l~sgs~d--------g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~-  153 (432)
                      ..+..     .....+.+++.|+|++.++....        |.|..++.. ++.......-.....++|+|+++.|+.+ 
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred             EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecc
Confidence            43332     23468899999999977776644        568888887 6655555555667899999999877654 


Q ss_pred             ECCCeEEEEeC
Q psy9319         154 CDDKYDRKQDC  164 (432)
Q Consensus       154 s~d~~I~vwd~  164 (432)
                      +..+.|..+++
T Consensus       153 s~~~~i~~~~~  163 (246)
T PF08450_consen  153 SFNGRIWRFDL  163 (246)
T ss_dssp             TTTTEEEEEEE
T ss_pred             cccceeEEEec
Confidence            56666555554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066|consensus

Probab=97.59  E-value=0.00097  Score=69.79  Aligned_cols=135  Identities=15%  Similarity=0.134  Sum_probs=90.6

Q ss_pred             CcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCC--CeeEE
Q psy9319          16 PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT-----GKYFAVGSKDALVSLWDAAE--LTCIR   88 (432)
Q Consensus        16 ~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd-----g~~L~sgs~dg~I~iwd~~~--~~~~~   88 (432)
                      |. ++++||.|+.+.+..+.     +.....++.- ..++.+++++|+     .+.+++|+.-| +.++.-.-  .....
T Consensus        83 Ge-y~asCS~DGkv~I~sl~-----~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v  154 (846)
T KOG2066|consen   83 GE-YVASCSDDGKVVIGSLF-----TDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV  154 (846)
T ss_pred             Cc-eEEEecCCCcEEEeecc-----CCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence            44 45999999987554432     3444444433 467899999997     56789999888 77775431  11112


Q ss_pred             EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC-Cc------eEEEEEccCCcEEEEEECCCeEEE
Q psy9319          89 TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ-AA------TFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        89 ~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~-~~------V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      .+....|+|.++.|.  |+++|-++++| |+|||+.+++.+..+..+ ..      ...+.|.++.++++  |...+|+|
T Consensus       155 ~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i  229 (846)
T KOG2066|consen  155 VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKI  229 (846)
T ss_pred             eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEE
Confidence            455677899999994  78999998887 899999999888777522 11      34578887655443  34445444


Q ss_pred             Ee
Q psy9319         162 QD  163 (432)
Q Consensus       162 wd  163 (432)
                      ..
T Consensus       230 ~~  231 (846)
T KOG2066|consen  230 CS  231 (846)
T ss_pred             EE
Confidence            43

>KOG4640|consensus

Probab=97.58  E-value=0.00033  Score=71.45  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=79.7

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEE-EEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR-AISFSHDGALIASGSEDLTIDIAHVESGKKVYD  131 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~  131 (432)
                      ..+.-+.|+|.-.++|.+..+|.|.+.-++ .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|+.+|..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            457788999998999999999999999988 677788876766776 999999999999999999999999999998887


Q ss_pred             --EecCCceEEEEEcc
Q psy9319         132 --ICIQAATFTVAWHP  145 (432)
Q Consensus       132 --~~~~~~V~~l~fsp  145 (432)
                        +.....|.++-|+|
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence              34667788888874

>KOG1275|consensus

Probab=97.57  E-value=0.00036  Score=73.78  Aligned_cols=129  Identities=12%  Similarity=0.096  Sum_probs=96.9

Q ss_pred             eEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCeeEEEEeeCCCCEEEEEE
Q psy9319          32 LDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD---------ALVSLWDAAELTCIRTFQRLDWPVRAISF  102 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d---------g~I~iwd~~~~~~~~~~~~h~~~V~~i~~  102 (432)
                      +.+.+-|..+.+.++++..|++.|.++  +-.|+.|++++..         .-|.|||++....+.-+.-+.++ .-+.|
T Consensus       197 G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf  273 (1118)
T KOG1275|consen  197 GTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRF  273 (1118)
T ss_pred             ceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhh
Confidence            566777888999999999999999776  4558899988754         45899999987766555544443 45678


Q ss_pred             eeC-CCEEEEEeCCCeEEEEeCCC-CcE---EEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         103 SHD-GALIASGSEDLTIDIAHVES-GKK---VYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       103 spd-g~~l~sgs~dg~V~vwd~~~-~~~---~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .|. ...++.+|..|.+.+-|..+ +.+   +..+ ...+.+..++++++|..++.|..+|.|.+|-
T Consensus       274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            883 45788888899999988432 122   2222 2455599999999999999999999988875

>smart00320 WD40 WD40 repeats

Probab=97.56  E-value=0.00026  Score=43.94  Aligned_cols=38  Identities=39%  Similarity=0.719  Sum_probs=34.1

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      .+...+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.54  E-value=0.00044  Score=64.92  Aligned_cols=152  Identities=17%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC-----cCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP-----VTCICIEFDPT-GKYFAVGSKDALVSLW   79 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~-----~~V~~l~~spd-g~~L~sgs~dg~I~iw   79 (432)
                      +|+++.++.+...+++  ++|..++.|.+.+-|.  .-.+..++.|.     .-|++..|+|. ...+..++..|.|.+-
T Consensus       174 hiNSiS~NsD~et~lS--aDdLrINLWnl~i~D~--sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         174 HINSISFNSDKETLLS--ADDLRINLWNLEIIDG--SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             EeeeeeecCchheeee--ccceeeeeccccccCC--ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            3577778777766533  3566666665554321  12233344443     46888999994 4566777789999999


Q ss_pred             eCCCCeeE----------------EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CcEEEEEe-c-------
Q psy9319          80 DAAELTCI----------------RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES-GKKVYDIC-I-------  134 (432)
Q Consensus        80 d~~~~~~~----------------~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~-~~~~~~~~-~-------  134 (432)
                      |++.....                .-|.+-...|..+.|+|+|+++++-+. -+|++||+.. ..++.+++ |       
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l  328 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDEL  328 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHH
Confidence            99732110                011122357888999999999987654 4799999975 45666663 1       


Q ss_pred             -----CCceE---EEEEccCCcEEEEEECCCeEEEE
Q psy9319         135 -----QAATF---TVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus       135 -----~~~V~---~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                           ...|.   .+.||.|...+++|+....--+|
T Consensus       329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         329 NDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                 22333   47889899999999988774443

>KOG3617|consensus

Probab=97.52  E-value=0.00066  Score=71.27  Aligned_cols=113  Identities=12%  Similarity=0.201  Sum_probs=83.0

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      ....|+|..++++++...-.  +.+.+.++ ..+|.+.....- .-.+++++|+|..-.|++|-.-|.+.+|...+....
T Consensus        19 ti~SWHPsePlfAVA~fS~e--r~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPE--RGGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCceeEEEEecCC--CCceEEEE-ecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            45679999998854432222  23344433 235555433221 223567999998888999999999999998876665


Q ss_pred             EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q psy9319          88 RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVE  124 (432)
Q Consensus        88 ~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~  124 (432)
                      .....|..+|..+.|||+|..+.|+..-|.|.+|...
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5556799999999999999999999999999999765

>KOG1645|consensus

Probab=97.52  E-value=0.00051  Score=66.53  Aligned_cols=90  Identities=13%  Similarity=0.140  Sum_probs=72.0

Q ss_pred             EEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCC-cEEEEE
Q psy9319          76 VSLWDAAELTCIRTFQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQ-YLLAYA  153 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg-~~l~s~  153 (432)
                      |++.+..+.+....+.+|...|.+++|||... ++..++.+..|.|.|+++..++..+.....+++++|+-+. ++|+.|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            55666555555556667788999999999766 7888999999999999999999888877999999999876 566677


Q ss_pred             ECCCeEEEEeCC
Q psy9319         154 CDDKYDRKQDCG  165 (432)
Q Consensus       154 s~d~~I~vwd~~  165 (432)
                      -..|.|.|||++
T Consensus       255 l~nG~VlvyD~R  266 (463)
T KOG1645|consen  255 LQNGMVLVYDMR  266 (463)
T ss_pred             ccCceEEEEEcc
Confidence            788885555553

>KOG1912|consensus

Probab=97.47  E-value=0.00047  Score=71.76  Aligned_cols=109  Identities=18%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCC------------CEEEEEeCCCeEEEE
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG------------ALIASGSEDLTIDIA  121 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg------------~~l~sgs~dg~V~vw  121 (432)
                      .-.++.|+|.| +||.|+ ...|.+.|..+.+.++.+.-|...|+.+.|.|-.            -.||++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            35678899977 667666 4579999999999999999999999999998721            256677778999999


Q ss_pred             eCCCCcEEEEEe-cCCceEEEEEcc---CC-cEEEEEECCCeEEEEeC
Q psy9319         122 HVESGKKVYDIC-IQAATFTVAWHP---KQ-YLLAYACDDKYDRKQDC  164 (432)
Q Consensus       122 d~~~~~~~~~~~-~~~~V~~l~fsp---dg-~~l~s~s~d~~I~vwd~  164 (432)
                      |+..+..+..+. +..++..++|-|   +. .+|+.-....+|.+|+.
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt  142 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT  142 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence            999988887776 667788888876   34 45666667778777754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.47  E-value=0.005  Score=68.43  Aligned_cols=151  Identities=18%  Similarity=0.228  Sum_probs=96.8

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEE--E--ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNI--L--KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~--l--~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+++|.|.|++++++- .  .....+|.++.- +|-....  +  ......|..+.|++|+..||....|. |.+|-..+
T Consensus       260 ~~l~WrPsG~lIA~~q-~--~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQ-R--LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             CCccCCCCCCEEEEEE-E--cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence            6889999999874443 2  233467777653 3332222  2  23456799999999999999977664 99999887


Q ss_pred             CeeE--EEEe-eCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeC----CC----------------CcEE----------
Q psy9319          84 LTCI--RTFQ-RLDWPVRAISFSH-DGALIASGSEDLTIDIAHV----ES----------------GKKV----------  129 (432)
Q Consensus        84 ~~~~--~~~~-~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~----~~----------------~~~~----------  129 (432)
                      ....  +.+. .....+..+.|+| +...|..++.+|.+..+++    ..                |..+          
T Consensus       335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V  414 (928)
T PF04762_consen  335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV  414 (928)
T ss_pred             CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence            5432  2222 1223345588998 4555666666555544332    11                1111          


Q ss_pred             ------EEEecCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         130 ------YDICIQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       130 ------~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                            ..+....+|.+++|++++..+++-..||.|.+|.
T Consensus       415 PPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  415 PPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                  2223567799999999988888889999966665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.47  E-value=0.0078  Score=57.86  Aligned_cols=172  Identities=10%  Similarity=0.079  Sum_probs=103.6

Q ss_pred             ccCCcCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCC--CeeEE--EEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEE
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVGSKD---ALVSLWDAAE--LTCIR--TFQRLDWPVRAISFSHDGALIASGS-EDLTIDI  120 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sgs~d---g~I~iwd~~~--~~~~~--~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~v  120 (432)
                      -.+.+.++-++|+|+++.|+++..+   |.|.-|.++.  |....  .......+...++++++|+++++++ ..|.|.+
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence            3456778999999999999888655   6677666653  54321  1112223447899999999999887 5689999


Q ss_pred             EeCCC-CcE---EEEEecCCc----------eEEEEEccCCcEEEEEECC-CeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         121 AHVES-GKK---VYDICIQAA----------TFTVAWHPKQYLLAYACDD-KYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       121 wd~~~-~~~---~~~~~~~~~----------V~~l~fspdg~~l~s~s~d-~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      +-+.. |..   +..+.|.+.          +....|.|++++|+++.-. ..        |.+|++..|.+...-....
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr--------i~~y~~~dg~L~~~~~~~v  187 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR--------IFLYDLDDGKLTPADPAEV  187 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce--------EEEEEcccCcccccccccc
Confidence            98865 433   233345544          7889999999999887532 23        6777777665433211110


Q ss_pred             chhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHHHHHH
Q psy9319         186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQIL  238 (432)
Q Consensus       186 mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~L  238 (432)
                           ...  ....|... .|.++..+-+.  .-+-++-+|.|+.....+..|
T Consensus       188 -----~~G--~GPRHi~F-Hpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~l  230 (346)
T COG2706         188 -----KPG--AGPRHIVF-HPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEEL  230 (346)
T ss_pred             -----CCC--CCcceEEE-cCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEe
Confidence                 000  00112211 23433333233  335678888888864443333

>smart00320 WD40 WD40 repeats

Probab=97.42  E-value=0.00053  Score=42.43  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=34.6

Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      +.+...+..|...|.++.|+|.+..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355677778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.37  E-value=0.0096  Score=59.56  Aligned_cols=161  Identities=14%  Similarity=0.116  Sum_probs=95.2

Q ss_pred             ccccccCCCCcce-eeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe-----------CCC
Q psy9319           7 IPLLGLNPRPSLY-QSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS-----------KDA   74 (432)
Q Consensus         7 I~~l~~~p~~~~l-~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs-----------~dg   74 (432)
                      |....|+|.++.- ++.-.....-....+++|.+..+..+.+-.-....-..+.|.+.|.+|+.-.           ...
T Consensus       176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges  255 (561)
T COG5354         176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES  255 (561)
T ss_pred             eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence            4455566653211 1332233333344455555554444333222222224678888888765321           124


Q ss_pred             eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe--CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEE
Q psy9319          75 LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS--EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs--~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s  152 (432)
                      .++|+++....+. ......++|..++|+|.++.+++.+  ..-.+.++|++..  +......+.=..+.|+|.++++++
T Consensus       256 nLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~  332 (561)
T COG5354         256 NLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF  332 (561)
T ss_pred             eEEEEeecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence            6888888743332 2225678999999999888776655  5778999999766  333334555567899999999999


Q ss_pred             EECCCeEEEEeCCceEEeecCCC
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPE  175 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~  175 (432)
                      ++-|..     .+++-+||....
T Consensus       333 agF~nl-----~gni~i~~~~~r  350 (561)
T COG5354         333 AGFDNL-----QGNIEIFDPAGR  350 (561)
T ss_pred             ecCCcc-----ccceEEeccCCc
Confidence            877643     233556665543

>KOG3621|consensus

Probab=97.37  E-value=0.00063  Score=70.27  Aligned_cols=115  Identities=14%  Similarity=0.101  Sum_probs=86.8

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEE-EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEE
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIR-TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY  130 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~  130 (432)
                      ...|.--+++..+.+++.|+.-|.+++|+-.++.... ...+..+.+..+..|++..++|.|+..|.|.++-+..+.+-.
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3445555567788999999999999999988665432 222345566777889988899999999999999887643211


Q ss_pred             --EE-----ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         131 --DI-----CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       131 --~~-----~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                        .+     .|...|++++|++++..+++|...|.|....+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              11     1577899999999999999999999977765543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.0088  Score=58.00  Aligned_cols=149  Identities=13%  Similarity=0.054  Sum_probs=98.3

Q ss_pred             CcccccccCCCCcceeeeee-----ecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVL-----TDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-DALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s-----~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~i   78 (432)
                      |..+.+.+.|+|.+.+.+..     .+..-....++..+. .+..+..+..|-..-+.++||||++.|+.+.. .+.|.-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            44578888999988865555     222233444444454 56667777776667789999999987777654 477887


Q ss_pred             EeCCC--Ce----e-EEEEeeCCCCEEEEEEeeCCCEEEEEeCCC-eEEEEeCCCCcEEEEEecC-CceEEEEEc-cCCc
Q psy9319          79 WDAAE--LT----C-IRTFQRLDWPVRAISFSHDGALIASGSEDL-TIDIAHVESGKKVYDICIQ-AATFTVAWH-PKQY  148 (432)
Q Consensus        79 wd~~~--~~----~-~~~~~~h~~~V~~i~~spdg~~l~sgs~dg-~V~vwd~~~~~~~~~~~~~-~~V~~l~fs-pdg~  148 (432)
                      |++..  +.    . ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+.+..+..+ ..+.+++|- |+.+
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~  268 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN  268 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence            77652  11    1 112222345566777888898886555554 89999998 9999888855 778888885 3445


Q ss_pred             EEEEEEC
Q psy9319         149 LLAYACD  155 (432)
Q Consensus       149 ~l~s~s~  155 (432)
                      .|+..+.
T Consensus       269 ~L~iTs~  275 (307)
T COG3386         269 TLYITSA  275 (307)
T ss_pred             EEEEEec
Confidence            4444443

>KOG1275|consensus

Probab=97.21  E-value=0.0015  Score=69.22  Aligned_cols=124  Identities=14%  Similarity=0.144  Sum_probs=89.8

Q ss_pred             EeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-
Q psy9319          36 FKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE-  114 (432)
Q Consensus        36 ~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-  114 (432)
                      ..|..+.+..+...-..+.|+-++  .+++++.+|...|+|.+-|..+.+.++++..|++.|.++..  .|+.|++|+. 
T Consensus       161 ~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S  236 (1118)
T KOG1275|consen  161 HIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYS  236 (1118)
T ss_pred             eeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecc
Confidence            345555555555444344455443  46889999999999999999999999999999999987655  7889998875 


Q ss_pred             --------CCeEEEEeCCCCcEEEEEecCCceEEEEEccCC-cEEEEEECCCeEEEEe
Q psy9319         115 --------DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQ-YLLAYACDDKYDRKQD  163 (432)
Q Consensus       115 --------dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg-~~l~s~s~d~~I~vwd  163 (432)
                              |..|+|||++.-..+.-+.......-+.|+|.- ..+++++..|...+.|
T Consensus       237 ~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  237 MRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             cccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecc
Confidence                    456899999987776666544444556777753 4566667777766655

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.17  E-value=0.047  Score=44.19  Aligned_cols=98  Identities=11%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEE
Q psy9319          55 CICIEFDP---TG-KYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY  130 (432)
Q Consensus        55 V~~l~~sp---dg-~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~  130 (432)
                      |++++++.   || ..|+.||.|..|++|+-.  ..+..+.. ...|.++.-... ..++.+..+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            56666655   33 679999999999999965  45666663 356777765554 56899999999999975  45566


Q ss_pred             EEecCCceEEEEEcc-C--C-cEEEEEECCCe
Q psy9319         131 DICIQAATFTVAWHP-K--Q-YLLAYACDDKY  158 (432)
Q Consensus       131 ~~~~~~~V~~l~fsp-d--g-~~l~s~s~d~~  158 (432)
                      .+.....+.++++.. +  | ..|++|-.+|.
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGk  107 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGK  107 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence            666566677765543 3  3 46888877776

>KOG1008|consensus

Probab=97.14  E-value=8.5e-05  Score=75.67  Aligned_cols=156  Identities=17%  Similarity=0.079  Sum_probs=96.8

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcc----eeeEEEcc-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL----EEQNILKA-HPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~----~~~~~l~~-h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ...+++|++-+...++++ .|..-....+.+||..++    +.-..+.+ -.....+++|-.+.+++++|.....+.++|
T Consensus       104 ~Ct~lAwneLDtn~LAag-ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifd  182 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAG-LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFD  182 (783)
T ss_pred             cccccccccccHHHHHhh-hhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhh
Confidence            347888988766554554 444434444555555444    11111222 334556888888889999999999999999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEe-CCCC-cEEEEEec-----CCceEEEEEccCCc-EEE
Q psy9319          81 AAELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAH-VESG-KKVYDICI-----QAATFTVAWHPKQY-LLA  151 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd-~~~~-~~~~~~~~-----~~~V~~l~fspdg~-~l~  151 (432)
                      ++.. +.....-.+..|..+.++| .+.++++-+ ||.|.+|| ...- .++..+.+     ...+..++|+|... .++
T Consensus       183 lRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla  260 (783)
T KOG1008|consen  183 LRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA  260 (783)
T ss_pred             hhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence            9832 2222222445677788888 788887766 99999999 3332 22222322     23488999999542 344


Q ss_pred             EEE-CCCeEEEEeC
Q psy9319         152 YAC-DDKYDRKQDC  164 (432)
Q Consensus       152 s~s-~d~~I~vwd~  164 (432)
                      +.+ ..++|+.+|+
T Consensus       261 ~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  261 VLSRDSITIRLYDI  274 (783)
T ss_pred             hhccCcceEEEecc
Confidence            444 4466777765

>KOG0882|consensus

Probab=97.10  E-value=0.0036  Score=61.67  Aligned_cols=161  Identities=14%  Similarity=0.078  Sum_probs=107.8

Q ss_pred             cccccCCCCcceeeeeee-cCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC-C-CEE-EEEeCCCeEEEEeCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLT-DISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT-G-KYF-AVGSKDALVSLWDAAE   83 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~-D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd-g-~~L-~sgs~dg~I~iwd~~~   83 (432)
                      ..++.+.++-++ ++.+. |.+++.+++--.|..++..+.-+.+   .+ ++..+|. . ..| ++.-.++.|.++|-..
T Consensus        57 ~sl~~S~dg~L~-~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg---~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~  131 (558)
T KOG0882|consen   57 LSLAVSYDGWLF-RSVEDPDHSVKVFDVENFDMINMIKLVDLPG---FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFG  131 (558)
T ss_pred             HhhhccccceeE-eeccCcccceeEEEeeccchhhhcccccCCC---ce-EEecCCCCeeeeEEeecccCCCcEEECCcC
Confidence            455666777665 55444 8888888887666655544444433   22 2223332 1 123 3445678999999775


Q ss_pred             Cee-EEEE-eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC------CcEEEEE----------ecCCceEEEEEcc
Q psy9319          84 LTC-IRTF-QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES------GKKVYDI----------CIQAATFTVAWHP  145 (432)
Q Consensus        84 ~~~-~~~~-~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~------~~~~~~~----------~~~~~V~~l~fsp  145 (432)
                      ..+ ...+ .-|..+|.++.++|-+..+++....|.|.-|....      +.....+          .......++.|+|
T Consensus       132 d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp  211 (558)
T KOG0882|consen  132 DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP  211 (558)
T ss_pred             CcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc
Confidence            443 2333 34889999999999999999999999999998763      1111111          1345578899999


Q ss_pred             CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         146 KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       146 dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      +|..+.+-+.|..        |+++.+.+|.+++.+
T Consensus       212 ~g~qistl~~Drk--------VR~F~~KtGklvqei  239 (558)
T KOG0882|consen  212 DGAQISTLNPDRK--------VRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccCcccccCcccE--------EEEEEeccchhhhhh
Confidence            9999999999988        777777777665543

>KOG1008|consensus

Probab=97.08  E-value=0.0001  Score=75.13  Aligned_cols=153  Identities=11%  Similarity=0.117  Sum_probs=99.0

Q ss_pred             ccccccCCCCc-ceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEe----CCCeEEEEe
Q psy9319           7 IPLLGLNPRPS-LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGS----KDALVSLWD   80 (432)
Q Consensus         7 I~~l~~~p~~~-~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs----~dg~I~iwd   80 (432)
                      +.|++++-+.. -+++.|+.++.+....++-  ... ...-...+|..+.++++|++ |.+.||+|-    .|..+.|||
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~--~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRH--PHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCC--ccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            45555544333 4457777776665554441  111 12334567889999999999 778888873    356899999


Q ss_pred             CCCC--ee--EEEEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEcc-CCcEEEEEE
Q psy9319          81 AAEL--TC--IRTFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP-KQYLLAYAC  154 (432)
Q Consensus        81 ~~~~--~~--~~~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fsp-dg~~l~s~s  154 (432)
                      +.++  .+  ...|.+ ......+++|-.+.+++.+|.....+.++|++........-....|..+..+| .+.++++..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence            9876  22  112222 33456688888888899999999999999997432211111233456677777 677777655


Q ss_pred             CCCeEEEEe
Q psy9319         155 DDKYDRKQD  163 (432)
Q Consensus       155 ~d~~I~vwd  163 (432)
                       ||.|.+||
T Consensus       216 -dg~iAiwD  223 (783)
T KOG1008|consen  216 -DGDIAIWD  223 (783)
T ss_pred             -cCceeecc
Confidence             89988888

>KOG1832|consensus

Probab=97.03  E-value=0.00022  Score=75.08  Aligned_cols=142  Identities=15%  Similarity=0.142  Sum_probs=99.4

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC--eEEEEeCC-CC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA--LVSLWDAA-EL   84 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg--~I~iwd~~-~~   84 (432)
                      .|++|+.....+ +.|+..     +.+.++++.+|.......+|..+|+-+.-+-||..+++.+.-.  -..+|++. ++
T Consensus      1105 Tc~afs~~~~hL-~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHL-AVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred             eeEEeecCCceE-Eeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence            577888777766 555444     4566677789999999999999999999888998876655443  46799986 45


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-e----cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-C----IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~----~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      ...++|.    .-.++.|+.....-+.|+......+||+.++..+.++ .    ....-.+..|+|+..+++   .||. 
T Consensus      1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv- 1250 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV- 1250 (1516)
T ss_pred             Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCce-
Confidence            5566665    3456788875544455555556899999999877663 1    222236688999888765   4654 


Q ss_pred             EEEeC
Q psy9319         160 RKQDC  164 (432)
Q Consensus       160 ~vwd~  164 (432)
                       +||+
T Consensus      1251 -LWDv 1254 (1516)
T KOG1832|consen 1251 -LWDV 1254 (1516)
T ss_pred             -eeee
Confidence             4554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.02  E-value=0.018  Score=60.90  Aligned_cols=142  Identities=13%  Similarity=0.118  Sum_probs=82.2

Q ss_pred             cccccccCCCCcceeeeee-----ecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-------
Q psy9319           6 FIPLLGLNPRPSLYQSSVL-----TDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-------   73 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s-----~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-------   73 (432)
                      .+...+++|++..+++...     .|....+|   +.+. .+.......+.  ..++..|+|||..|++.+..       
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lw---v~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLW---VGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEE---EEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            5677889999988754432     12222333   3332 22232223332  37889999999888776533       


Q ss_pred             -----CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEE---EeCCCCcE-E---EEEe--cCCceE
Q psy9319          74 -----ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI---AHVESGKK-V---YDIC--IQAATF  139 (432)
Q Consensus        74 -----g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~v---wd~~~~~~-~---~~~~--~~~~V~  139 (432)
                           +.+.+.++..+....   ...+.|..+.|||||..++... ++.|++   -....|.. +   ..+.  ....+.
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV  500 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence                 223333443332221   2346799999999999988776 467777   44344541 1   1122  233468


Q ss_pred             EEEEccCCcEEEEEECCCe
Q psy9319         140 TVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       140 ~l~fspdg~~l~s~s~d~~  158 (432)
                      ++.|.+++.++ ++..++.
T Consensus       501 ~l~W~~~~~L~-V~~~~~~  518 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPE  518 (591)
T ss_pred             cceEecCCEEE-EEecCCC
Confidence            89999998865 4444443

>KOG2114|consensus

Probab=97.01  E-value=0.049  Score=57.90  Aligned_cols=147  Identities=12%  Similarity=0.071  Sum_probs=96.0

Q ss_pred             ceeeeeeecCCCceeEEEEeecCcc------eee--EEEcc-----CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--
Q psy9319          18 LYQSSVLTDISPKQLDFKFKEHHKL------EEQ--NILKA-----HPVTCICIEFDPTGKYFAVGSKDALVSLWDAA--   82 (432)
Q Consensus        18 ~l~~s~s~D~~~~~~~i~~~d~~~~------~~~--~~l~~-----h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~--   82 (432)
                      .++++..-|...+.--+.+|+....      .++  +.+.+     ...++++++.|.+-..+|+|-.+|.|..+.-+  
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            3456666666654446777765422      233  12222     35678999999999999999999999988533  


Q ss_pred             --CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE-EEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          83 --ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK-VYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        83 --~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~-~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                        .|...........+|+.+.+..++..++.+..-..|.+|.+....+ ...+. ++.++.|..|++....+++++. ..
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~  236 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EF  236 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ce
Confidence              1222222333467899999999988755555566799999874442 33343 6777889999876664555554 45


Q ss_pred             EEEEeCC
Q psy9319         159 DRKQDCG  165 (432)
Q Consensus       159 I~vwd~~  165 (432)
                      +.+||..
T Consensus       237 l~fY~sd  243 (933)
T KOG2114|consen  237 LYFYDSD  243 (933)
T ss_pred             EEEEcCC
Confidence            6666653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.00  E-value=0.016  Score=59.19  Aligned_cols=132  Identities=17%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      ...+.++|++..+++.  .|+   .+.+  +.........     .+....++|++.+. +|+-...++|.|+.--....
T Consensus        35 p~~ls~npngr~v~V~--g~g---eY~i--yt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVC--GDG---EYEI--YTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             -SEEEE-TTSSEEEEE--ETT---EEEE--EETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T
T ss_pred             CeeEEECCCCCEEEEE--cCC---EEEE--EEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc
Confidence            4788899999877552  232   2233  3322222221     23345678988554 66666688899963222222


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ...+.. ...+..+-.   |.+|+..+.+ .|.+||+.++..+..+.... |..+.|+++|.+++..+.+.
T Consensus       102 ~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~  166 (443)
T PF04053_consen  102 VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDS  166 (443)
T ss_dssp             T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-S
T ss_pred             ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCe
Confidence            223321 122333322   7777766555 89999999999999997554 89999999999999988664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0882|consensus

Probab=97.00  E-value=0.0067  Score=59.82  Aligned_cols=126  Identities=18%  Similarity=0.185  Sum_probs=94.7

Q ss_pred             EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CeeEE---------EEeeCCCCEEEEEEeeCCCEEEE
Q psy9319          47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE------LTCIR---------TFQRLDWPVRAISFSHDGALIAS  111 (432)
Q Consensus        47 ~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~------~~~~~---------~~~~h~~~V~~i~~spdg~~l~s  111 (432)
                      .-.-|..+|.++.++|-+..++|+...|.|.-|....      .....         .+........++.|+|+|..+.+
T Consensus       139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist  218 (558)
T KOG0882|consen  139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST  218 (558)
T ss_pred             ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence            3345999999999999999999999999999998772      11111         11223456789999999999999


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEe---------------------------------cC-CceEEEEEccCCcEEEEEECCC
Q psy9319         112 GSEDLTIDIAHVESGKKVYDIC---------------------------------IQ-AATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~---------------------------------~~-~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      -+.|..|+++++.+|..+..+.                                 +. ..-..++|+..|++|+.|+-=|
T Consensus       219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g  298 (558)
T KOG0882|consen  219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG  298 (558)
T ss_pred             cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence            9999999999998886554331                                 11 1124577888899999988776


Q ss_pred             eEEEEeCCceEEeecCCCceeeee
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                               |++.++.++.+.+.+
T Consensus       299 ---------ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  299 ---------IKVINLDTNTVVRIL  313 (558)
T ss_pred             ---------EEEEEeecCeEEEEe
Confidence                     788888887776654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.98  E-value=0.033  Score=55.66  Aligned_cols=126  Identities=10%  Similarity=-0.005  Sum_probs=78.7

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      .+..+|..+|+.+............+.  .++..++.++.++.+..+|..+|+.+-..... +.+.+.-.. .+..++.+
T Consensus        76 ~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~  151 (377)
T TIGR03300        76 TVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVR  151 (377)
T ss_pred             eEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEE
Confidence            456667778877766554432222222  24677888889999999999999887655422 222221111 34567778


Q ss_pred             eCCCeEEEEeCCCCcEEEEEecCCceEE------EEEccCCcEEEEEECCCeEEEEeC
Q psy9319         113 SEDLTIDIAHVESGKKVYDICIQAATFT------VAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       113 s~dg~V~vwd~~~~~~~~~~~~~~~V~~------l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +.++.|..||..+|+.+..+....+...      .... + ..++.++.++.+..+|+
T Consensus       152 ~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       152 TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDL  207 (377)
T ss_pred             CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEc
Confidence            8899999999999998887754333211      1121 2 35677777888444443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.97  E-value=0.081  Score=48.75  Aligned_cols=134  Identities=10%  Similarity=0.049  Sum_probs=84.3

Q ss_pred             EEEEeecCcceeeEEE-ccCC---cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCC----------EE
Q psy9319          33 DFKFKEHHKLEEQNIL-KAHP---VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWP----------VR   98 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l-~~h~---~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~----------V~   98 (432)
                      .+..+|..+|+.+... ....   ..........++..++.+..++.|..+|+.+|..+-........          +.
T Consensus        87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen   87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN  166 (238)
T ss_dssp             EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred             eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence            5667788888888773 3221   11122223334788888888999999999999998777654322          11


Q ss_pred             EEEEeeCCCEEEEEeCCCe-EEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCce
Q psy9319          99 AISFSHDGALIASGSEDLT-IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus        99 ~i~~spdg~~l~sgs~dg~-V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      +-....++ .++.++.++. +.+ |+.+++.+.... ...+..+ ..+++..|++++.++.        +..||+.+|+.
T Consensus       167 ~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~--------l~~~d~~tG~~  234 (238)
T PF13360_consen  167 GSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGR--------LYALDLKTGKV  234 (238)
T ss_dssp             EEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTE--------EEEEETTTTEE
T ss_pred             cceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCE--------EEEEECCCCCE
Confidence            22222244 7777777775 555 999999775443 3333332 3456777887778888        67777777665


Q ss_pred             e
Q psy9319         178 K  178 (432)
Q Consensus       178 ~  178 (432)
                      +
T Consensus       235 ~  235 (238)
T PF13360_consen  235 V  235 (238)
T ss_dssp             E
T ss_pred             E
Confidence            4

...

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.93  E-value=0.029  Score=45.36  Aligned_cols=77  Identities=18%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             EEEEEEee-CC---CEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeec
Q psy9319          97 VRAISFSH-DG---ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGF  172 (432)
Q Consensus        97 V~~i~~sp-dg---~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~  172 (432)
                      |++++++. ++   ..|+.||.|..|++|+  ....+..+.....|.+++-... ..++.+..+|+|-+|+- ..++|.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~-~~RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR-SQRLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC-cceeeee
Confidence            66777766 33   5899999999999997  4578888888888998887765 56888999999999986 4688988


Q ss_pred             CCCce
Q psy9319         173 LPEPI  177 (432)
Q Consensus       173 ~~~~~  177 (432)
                      .+...
T Consensus        78 KSK~~   82 (111)
T PF14783_consen   78 KSKNQ   82 (111)
T ss_pred             ccCCC
Confidence            76543

>KOG1920|consensus

Probab=96.91  E-value=0.02  Score=62.85  Aligned_cols=155  Identities=14%  Similarity=0.102  Sum_probs=92.6

Q ss_pred             CCCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           2 EGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         2 ~g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      +|...|..+.|..++..+.++ .     ..+++.+-|..+.... ....-..+|.+++||||+..++..+..+++.+-+-
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~-~-----~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~  138 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVI-T-----ALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK  138 (1265)
T ss_pred             CCCcceEEEEEecccceEEEE-e-----cCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence            345566666666666555222 2     2234444455444222 22223567999999999999999988887765432


Q ss_pred             C----C-------------------CeeEEEEeeCCC---------------------CEEEEEEeeCCCEEEEEe----
Q psy9319          82 A----E-------------------LTCIRTFQRLDW---------------------PVRAISFSHDGALIASGS----  113 (432)
Q Consensus        82 ~----~-------------------~~~~~~~~~h~~---------------------~V~~i~~spdg~~l~sgs----  113 (432)
                      .    .                   |.....|.|..+                     .=++|+|--||.++|+..    
T Consensus       139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence            1    0                   111223332111                     123589999999998732    


Q ss_pred             -CCCeEEEEeCCCCcEEEE-EecCCceEEEEEccCCcEEEEEE---CCCeEEEEeC
Q psy9319         114 -EDLTIDIAHVESGKKVYD-ICIQAATFTVAWHPKQYLLAYAC---DDKYDRKQDC  164 (432)
Q Consensus       114 -~dg~V~vwd~~~~~~~~~-~~~~~~V~~l~fspdg~~l~s~s---~d~~I~vwd~  164 (432)
                       +...|+|||-+ |..-.. .+..+.-.+++|-|.|..+++-.   .|+.|.+|.-
T Consensus       219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence             23789999977 432211 12334456799999999888753   4556777754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.90  E-value=0.026  Score=56.35  Aligned_cols=120  Identities=12%  Similarity=-0.035  Sum_probs=78.0

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCC-CEEEEEEeeCCCEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIAS  111 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~i~~spdg~~l~s  111 (432)
                      .+..+|..+++.+...... . .....  .++..++.++.+|.|..+|..+|..+........ ...+...  .+..+++
T Consensus       252 ~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~  325 (377)
T TIGR03300       252 RVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV  325 (377)
T ss_pred             EEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE
Confidence            4566677777766655421 1 11121  2466788888999999999999987655432222 1222222  4678999


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEecCC-ceE-EEEEccCCcEEEEEECCCeEE
Q psy9319         112 GSEDLTIDIAHVESGKKVYDICIQA-ATF-TVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~~~~-~V~-~l~fspdg~~l~s~s~d~~I~  160 (432)
                      ++.+|.|.++|..+|+.+..+.... .+. +..+. ++ .|+.++.||.|.
T Consensus       326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~  374 (377)
T TIGR03300       326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLY  374 (377)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEE
Confidence            9999999999999999998887333 333 23333 33 477888899843

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.64  E-value=0.0047  Score=58.18  Aligned_cols=114  Identities=12%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee---EEEEeeCC-----CCEEEEEEeeC-CCEEEEEeCCCeEE
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC---IRTFQRLD-----WPVRAISFSHD-GALIASGSEDLTID  119 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~---~~~~~~h~-----~~V~~i~~spd-g~~l~sgs~dg~V~  119 (432)
                      ..|.--+.++.|+.|...++++. |-.|.+|++.....   +.-+.+|.     .-|++..|+|. ...+...+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            35777788999999888887754 78899999874222   33344443     46889999994 44555667789999


Q ss_pred             EEeCCCCcE------EEEEe-----------cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         120 IAHVESGKK------VYDIC-----------IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       120 vwd~~~~~~------~~~~~-----------~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +-|++....      +....           ..+.|..+.|+|+|+++++-+. -++.+||.
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv  308 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV  308 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence            999984321      11110           2345788999999999986544 35555554

>KOG4640|consensus

Probab=96.63  E-value=0.0078  Score=61.74  Aligned_cols=69  Identities=22%  Similarity=0.313  Sum_probs=59.1

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceE-EEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          95 WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATF-TVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        95 ~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~-~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ..+.-+.|+|.-.++|++..+|.|.+.-+. .+.+.+++ +...+. +++|.|||+.||+|-.||+|++.|+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv   91 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV   91 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence            467789999998999999999999998887 77788887 666677 9999999999999999999555554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.62  E-value=0.041  Score=59.53  Aligned_cols=123  Identities=14%  Similarity=0.073  Sum_probs=83.2

Q ss_pred             EEEEeecCcceeeEEEccCCcC-EEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCC-eeEEEEe----eCCCCEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVT-CICIEFDP-----TGKYFAVGSKDALVSLWDAAEL-TCIRTFQ----RLDWPVRAIS  101 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~-V~~l~~sp-----dg~~L~sgs~dg~I~iwd~~~~-~~~~~~~----~h~~~V~~i~  101 (432)
                      .++..|+..|+.+.....|... |..++-+.     .....+.|-.+..+..||.+-. ..+..-.    .......|++
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a  584 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA  584 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence            4566688889999888877644 55543221     1234566777889999998853 2221111    1234567777


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECC
Q psy9319         102 FSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       102 ~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      -+.+| +||.||.+|.|++||-........++ .+.+|..|..+.||++|++.+..
T Consensus       585 Tt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  585 TTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             ecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            66666 79999999999999954333333343 57899999999999999877654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.19  Score=50.55  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK---DALVSLWDAAEL   84 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~---dg~I~iwd~~~~   84 (432)
                      ..+++++.+....+....+.     .+.+.|..+......+.-.. ....++++|++..++.+..   ++++.+.|..+.
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~-----~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSN-----TVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             cceeeCCCCCeEEEecCCCC-----eEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            34566666665545543333     33444444444444443222 4568899999987766654   689999999988


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEE-----EEecCCceEEEEEccCCcEEEEEECC--
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVY-----DICIQAATFTVAWHPKQYLLAYACDD--  156 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~-----~~~~~~~V~~l~fspdg~~l~s~s~d--  156 (432)
                      ..+........+ ..++++|+|..++.+. .++.|.+.|..+.....     ..........+.++|+|..+......  
T Consensus       151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            887775544444 8899999999777665 78999999976665553     12233345678999999866665444  


Q ss_pred             -CeEEEEeCC
Q psy9319         157 -KYDRKQDCG  165 (432)
Q Consensus       157 -~~I~vwd~~  165 (432)
                       +.+...|..
T Consensus       230 ~~~v~~id~~  239 (381)
T COG3391         230 SNNVLKIDTA  239 (381)
T ss_pred             CceEEEEeCC
Confidence             364444443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.54  E-value=0.25  Score=50.04  Aligned_cols=116  Identities=14%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEE-EccCCcCEEEEEEcCCCCEEEEEeCCC-----------e
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNI-LKAHPVTCICIEFDPTGKYFAVGSKDA-----------L   75 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~sgs~dg-----------~   75 (432)
                      ....++|++..++.+.+..+ .....+++.|+.+++.+.. +... . ...+.|.++++.|+....+.           .
T Consensus       127 ~~~~~Spdg~~la~~~s~~G-~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGG-SEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETT-SSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeECCCCCEEEEEecCCC-CceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            46788999998855555544 4667899999999977643 2221 1 12399999988776654333           3


Q ss_pred             EEEEeCCCCee--EEEEeeCCCC--EEEEEEeeCCCEEEEEeC---C-CeEEEEeCCCC
Q psy9319          76 VSLWDAAELTC--IRTFQRLDWP--VRAISFSHDGALIASGSE---D-LTIDIAHVESG  126 (432)
Q Consensus        76 I~iwd~~~~~~--~~~~~~h~~~--V~~i~~spdg~~l~sgs~---d-g~V~vwd~~~~  126 (432)
                      |+.|.+.+...  ...+......  ...+..++|+++|+..+.   + ..+++.|+..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            78888876543  3455443333  568889999998775442   2 45888888875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.44  E-value=0.031  Score=58.43  Aligned_cols=108  Identities=11%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             EcCCCCEEEE-EeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-------------------------
Q psy9319          60 FDPTGKYFAV-GSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-------------------------  113 (432)
Q Consensus        60 ~spdg~~L~s-gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-------------------------  113 (432)
                      ++|||+.+.. .-..+.+.+.|..+.+...++.-.. ....++++|+|.++++.+                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            4556655432 2234567777887766655554322 445677888888777665                         


Q ss_pred             ---------------CCCeEEEEeCCC-----CcEEEEEecCCceEEEEEccCCcEEEEEE-CCCeEEEEeCCceE
Q psy9319         114 ---------------EDLTIDIAHVES-----GKKVYDICIQAATFTVAWHPKQYLLAYAC-DDKYDRKQDCGNLK  168 (432)
Q Consensus       114 ---------------~dg~V~vwd~~~-----~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~~~i~  168 (432)
                                     .++.|.+.|..+     ...+..+........+.++|||+++++++ .+.++.|+|+..+.
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence                           224588888887     45666677778888999999999877765 57888888776544

>KOG3617|consensus

Probab=96.35  E-value=0.006  Score=64.40  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=76.9

Q ss_pred             EEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE
Q psy9319          56 ICIEFDPTGKYFAVGSK----DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD  131 (432)
Q Consensus        56 ~~l~~spdg~~L~sgs~----dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~  131 (432)
                      +-..|+|...+|+.++-    .|+|.||- ++|.+-.... ..-.+++++|+|..-.|+.|=.-|.+.+|...+.+.-..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            34568898888877653    46787774 3454322111 122356799999888888888889999998766543332


Q ss_pred             -EecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         132 -ICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       132 -~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                       .+|+.+|..+.|||+|..++++..-|.+.+|-.
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence             349999999999999999999998888555543

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.33  E-value=0.039  Score=58.48  Aligned_cols=100  Identities=8%  Similarity=-0.038  Sum_probs=63.4

Q ss_pred             cCEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---------
Q psy9319          53 VTCICIEFDPTGKYFAVGS------KDA--LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED---------  115 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs------~dg--~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---------  115 (432)
                      ..+.+.++||+|..++...      .|.  .|.+++.. +.. ..+.. ....+...|+|||..|++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4677889999999887665      243  45555653 322 33322 2237889999998888777533         


Q ss_pred             ---CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319         116 ---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       116 ---g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                         +.+.+.++..+....  ...+.|..+.|||||..++... ++.
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~  469 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGK  469 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCE
Confidence               223333443333222  2356799999999999888776 455

>KOG2079|consensus

Probab=96.31  E-value=0.014  Score=63.26  Aligned_cols=100  Identities=18%  Similarity=0.168  Sum_probs=73.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCc---
Q psy9319          63 TGKYFAVGSKDALVSLWDAAEL-TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAA---  137 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~---  137 (432)
                      -+..++.|+..|.|-..|..+. .+.+.-....++|++++|+.+|..++.|-.+|.|.+||+..+..+..+. +..+   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4567888998999988887642 1112222245799999999999999999999999999999999988886 4444   


Q ss_pred             eEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         138 TFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       138 V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      |..+.+..++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            444555556667777777775  5543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.38  Score=48.31  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=86.7

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCcEE
Q psy9319          54 TCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE---DLTIDIAHVESGKKV  129 (432)
Q Consensus        54 ~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~---dg~V~vwd~~~~~~~  129 (432)
                      .-..+++++.+. .+++...+..|.+.|..+....+...... ....++++|++..++.+..   ++++.+.|..++..+
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            345778888887 44555566899999988777666655333 6678999999987776654   689999999999888


Q ss_pred             EEEecCCceEEEEEccCCcEEEEEE-CCCeEEEEeCCceEEee
Q psy9319         130 YDICIQAATFTVAWHPKQYLLAYAC-DDKYDRKQDCGNLKVFG  171 (432)
Q Consensus       130 ~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~~~i~vwd  171 (432)
                      ...........++++|+|..++.+. .++.|.+.|.....+|.
T Consensus       154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~  196 (381)
T COG3391         154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR  196 (381)
T ss_pred             EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence            8865333338899999998666554 77887787776666663

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.24  E-value=0.078  Score=49.70  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCee--------------------E---EE---E---
Q psy9319          51 HPVTCICIEFDPTGKYFAVGSKDA-----------LVSLWDAAELTC--------------------I---RT---F---   90 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sgs~dg-----------~I~iwd~~~~~~--------------------~---~~---~---   90 (432)
                      +...|.++.++|..++|+.|+...           -+.-|-+-++.+                    .   ..   +   
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            467899999999888887765321           145554322110                    0   00   0   


Q ss_pred             eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319          91 QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus        91 ~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                      ......|..|..||||..|++...+|.|.+|++.+-.......
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            1124579999999999999999999999999998766655543

>KOG1920|consensus

Probab=96.22  E-value=0.027  Score=61.91  Aligned_cols=110  Identities=21%  Similarity=0.282  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe---CCCeEEEEeCCC--
Q psy9319          56 ICIEFDPTGKYFAVG-----SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS---EDLTIDIAHVES--  125 (432)
Q Consensus        56 ~~l~~spdg~~L~sg-----s~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs---~dg~V~vwd~~~--  125 (432)
                      +++.|-.||.++++.     .....|+|||.+ |..-.+-....+.=.+++|-|.|..+++..   .|+.|.++.-..  
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            358999999999873     223689999987 544333333445556899999999998753   456788887432  


Q ss_pred             -CcEEEEEe-cCCceEEEEEccCCcEEEE---EECCCeEEEEeCCc
Q psy9319         126 -GKKVYDIC-IQAATFTVAWHPKQYLLAY---ACDDKYDRKQDCGN  166 (432)
Q Consensus       126 -~~~~~~~~-~~~~V~~l~fspdg~~l~s---~s~d~~I~vwd~~~  166 (432)
                       |.-...++ ...+|..++|+.++..|++   ......|.+|.+++
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence             22222222 2334899999999999887   44555599998754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.19  E-value=0.016  Score=57.47  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=63.3

Q ss_pred             cCCCCEEEEEe---------CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE
Q psy9319          61 DPTGKYFAVGS---------KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD  131 (432)
Q Consensus        61 spdg~~L~sgs---------~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~  131 (432)
                      |||+++++...         ..+.+.|||+.++....... ....+....|||+|+.++... ++.|.+++..++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            67887776642         24578999999876543333 256788999999999998886 56899999887744332


Q ss_pred             EecC------------------CceEEEEEccCCcEEEEEECCC
Q psy9319         132 ICIQ------------------AATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       132 ~~~~------------------~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ....                  +.-..+.|||||++|+....|.
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~  122 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE  122 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence            2111                  1224688999999999876553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621|consensus

Probab=96.03  E-value=0.032  Score=58.11  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             eEEEEeecCcceee-EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE-----EEE-eeCCCCEEEEEEee
Q psy9319          32 LDFKFKEHHKLEEQ-NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI-----RTF-QRLDWPVRAISFSH  104 (432)
Q Consensus        32 ~~i~~~d~~~~~~~-~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~-----~~~-~~h~~~V~~i~~sp  104 (432)
                      +.+++++-..+... ....+-.+.+..+..|++..++|+|+..|.|.++.+..+.+.     ..+ ..|...|++++|++
T Consensus        55 G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~  134 (726)
T KOG3621|consen   55 GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK  134 (726)
T ss_pred             ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc
Confidence            34555554444332 222234456667778998889999999999999988754321     111 13678899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q psy9319         105 DGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus       105 dg~~l~sgs~dg~V~vwd~~~  125 (432)
                      ++..+++|...|.|.+-.+.+
T Consensus       135 ~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  135 NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccEEeecCCCceEEEEEech
Confidence            999999999999998887766

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.98  E-value=0.3  Score=48.36  Aligned_cols=157  Identities=10%  Similarity=-0.032  Sum_probs=87.9

Q ss_pred             ccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEE
Q psy9319          11 GLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF   90 (432)
Q Consensus        11 ~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~   90 (432)
                      .|.++|..++.++..|   ..+++...|+.+++..+.-.+-........++|+++.++-......|.-.|+.+.+....+
T Consensus        42 ~ft~dG~kllF~s~~d---g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFD---GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TT---SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccC---CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            4678888887766555   4456777788877665443332222224557898888877666678999999998876666


Q ss_pred             eeCCCCEEEEEEee--CCCEEEEEeC---C-------------------CeEEEEeCCCCcEEEEEecCCceEEEEEccC
Q psy9319          91 QRLDWPVRAISFSH--DGALIASGSE---D-------------------LTIDIAHVESGKKVYDICIQAATFTVAWHPK  146 (432)
Q Consensus        91 ~~h~~~V~~i~~sp--dg~~l~sgs~---d-------------------g~V~vwd~~~~~~~~~~~~~~~V~~l~fspd  146 (432)
                      ......+-...|..  |+..++..-.   |                   +.|.--|+.+|+....+.....+..+.|+|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            66666676677754  5665543211   1                   2466678888887777777888889999996


Q ss_pred             CcEEEEEECCCeEEEEeCCceEEeecC
Q psy9319         147 QYLLAYACDDKYDRKQDCGNLKVFGFL  173 (432)
Q Consensus       147 g~~l~s~s~d~~I~vwd~~~i~vwd~~  173 (432)
                      ...+++=|..|-   ||.-.-++|-+.
T Consensus       199 dp~li~fCHEGp---w~~Vd~RiW~i~  222 (386)
T PF14583_consen  199 DPTLIMFCHEGP---WDLVDQRIWTIN  222 (386)
T ss_dssp             EEEEEEEEE-S----TTTSS-SEEEEE
T ss_pred             CCCEEEEeccCC---cceeceEEEEEE
Confidence            544444444444   454333455444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.97  E-value=0.29  Score=46.14  Aligned_cols=121  Identities=12%  Similarity=0.103  Sum_probs=80.4

Q ss_pred             EEeecCcceeeEEEccCCcC--EEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC-eeEEEEeeCCCCEEEEEEeeCC
Q psy9319          35 KFKEHHKLEEQNILKAHPVT--CICIEFDPTGKYFAVGSKD-----ALVSLWDAAEL-TCIRTFQRLDWPVRAISFSHDG  106 (432)
Q Consensus        35 ~~~d~~~~~~~~~l~~h~~~--V~~l~~spdg~~L~sgs~d-----g~I~iwd~~~~-~~~~~~~~h~~~V~~i~~spdg  106 (432)
                      .++|....+...++...++.  .-.-.|||||.+|++.-.|     |.|-|||...+ ..+..+..|.-....+.|.+||
T Consensus        94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG  173 (366)
T COG3490          94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG  173 (366)
T ss_pred             EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC
Confidence            35566666666555432221  1233589999999876444     67999998743 4467788888888999999999


Q ss_pred             CEEEEEeCC------------------CeEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCcEEEEEEC
Q psy9319         107 ALIASGSED------------------LTIDIAHVESGKKVYDIC-----IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus       107 ~~l~sgs~d------------------g~V~vwd~~~~~~~~~~~-----~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      +.++.+...                  .++.+.|..+|..+....     +.-.|..++..+||..++.+-.
T Consensus       174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence            999876541                  134455555666554432     3445788888888877665543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.96  E-value=0.7  Score=45.08  Aligned_cols=128  Identities=8%  Similarity=-0.011  Sum_probs=77.1

Q ss_pred             eEEEEeecCcc----eeeEEE--ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eEEEEe-eCCCCEEEEEEe
Q psy9319          32 LDFKFKEHHKL----EEQNIL--KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT-CIRTFQ-RLDWPVRAISFS  103 (432)
Q Consensus        32 ~~i~~~d~~~~----~~~~~l--~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~-~~~~~~-~h~~~V~~i~~s  103 (432)
                      +-+.+++....    ..+..+  ....++|++++-- .| .|++|. .+.|.+|++.... ....-. .....+.++.. 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence            66667666552    122221  2346889988755 34 455544 5789999988766 332222 22335555554 


Q ss_pred             eCCCEEEEEeCCCeEEEEeCCC-CcEEEEEe---cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         104 HDGALIASGSEDLTIDIAHVES-GKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       104 pdg~~l~sgs~dg~V~vwd~~~-~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                       .+.+++.|.....+.++.+.. +..+..+.   ....+.++.|-+++..++.+..+|.+.++..
T Consensus       138 -~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  138 -FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             -ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             -cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence             466999998877788775443 33344443   4555888888877778999999999665544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2444|consensus

Probab=95.94  E-value=0.022  Score=51.79  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEE-EEeeCCCCEEEE-EEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cC-Cce
Q psy9319          63 TGKYFAVGSKDALVSLWDAAELTCIR-TFQRLDWPVRAI-SFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQ-AAT  138 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~i-~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~-~~V  138 (432)
                      -+..+++|+.+|.|.+|...-..... .+..-...|-++ .--.++.+.++++.||.|+.|++.-++.+.... |. .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            35678999999999999886211111 111112223222 222356688999999999999998877766554 33 233


Q ss_pred             EEEEEccCCcEEEEEECCCeEEEEeC---CceEEeecC
Q psy9319         139 FTVAWHPKQYLLAYACDDKYDRKQDC---GNLKVFGFL  173 (432)
Q Consensus       139 ~~l~fspdg~~l~s~s~d~~I~vwd~---~~i~vwd~~  173 (432)
                               ..+++.+.++.|.+|++   ..++.|++.
T Consensus       149 ---------e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  149 ---------EELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ---------ceeEEecCCceEEeeccccchhhhhcchh
Confidence                     33333444444444433   225566654

>KOG4649|consensus

Probab=95.91  E-value=0.13  Score=47.64  Aligned_cols=96  Identities=20%  Similarity=0.135  Sum_probs=71.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceE-EE
Q psy9319          63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATF-TV  141 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~-~l  141 (432)
                      -|.+++.|+..|.+++.+..+|..+..|..-..-=......+++..++.|+.|++.+..|..+..++....-.+.+. +.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            47789999999999999999998877776433222233456789999999999999999999999999877555543 45


Q ss_pred             EEccCCcEEEEEECCCe
Q psy9319         142 AWHPKQYLLAYACDDKY  158 (432)
Q Consensus       142 ~fspdg~~l~s~s~d~~  158 (432)
                      +..|....|+.+...|.
T Consensus       142 ~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGA  158 (354)
T ss_pred             eecCCCceEEEEeccce
Confidence            66773334444455554

>KOG2114|consensus

Probab=95.90  E-value=0.17  Score=53.98  Aligned_cols=145  Identities=11%  Similarity=0.099  Sum_probs=86.1

Q ss_pred             cCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCC-----eEEEEeCCCC-
Q psy9319          12 LNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDA-----LVSLWDAAEL-   84 (432)
Q Consensus        12 ~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg-----~I~iwd~~~~-   84 (432)
                      +++++..+ +-++.|+.+...+      +..+..+-++.+...+...-|.-++ .+|++.+.|+     .|+|||++.. 
T Consensus        31 ~~s~~~~v-vigt~~G~V~~Ln------~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   31 CSSSTGSV-VIGTADGRVVILN------SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             EcCCCceE-EEeeccccEEEec------ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            44444444 5555555442221      1234446677777663333344444 6788877665     4899998632 


Q ss_pred             -----eeE--EEEee-----CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC----CCc-EEEEEecCCceEEEEEccCC
Q psy9319          85 -----TCI--RTFQR-----LDWPVRAISFSHDGALIASGSEDLTIDIAHVE----SGK-KVYDICIQAATFTVAWHPKQ  147 (432)
Q Consensus        85 -----~~~--~~~~~-----h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~----~~~-~~~~~~~~~~V~~l~fspdg  147 (432)
                           .++  +.+.+     ...++.++++|.+-..+|.|-.||.|.++.-.    .|. .........+|+.+++..++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence                 233  23333     24578899999999999999999999988432    121 11222367789999998888


Q ss_pred             cEEEEEECCCeEEEEe
Q psy9319         148 YLLAYACDDKYDRKQD  163 (432)
Q Consensus       148 ~~l~s~s~d~~I~vwd  163 (432)
                      ..++.+.+...|.+|.
T Consensus       184 ~s~lFv~Tt~~V~~y~  199 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYS  199 (933)
T ss_pred             ceeEEEEecceeEEEE
Confidence            7633333344444443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.89  E-value=0.4  Score=50.75  Aligned_cols=107  Identities=15%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe-eCCCCEEEEEEee--CCCEEEEEeCCCeEEEEeCC
Q psy9319          48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSH--DGALIASGSEDLTIDIAHVE  124 (432)
Q Consensus        48 l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd~~  124 (432)
                      +...-..++-+.-|.-++..+..+....+.|||...+.....-. ...+.|.+++|.+  +|+.+++.+..+.|.++.-.
T Consensus        25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            33333444555555555555555555689999999877533222 3567899999975  89999999999999988542


Q ss_pred             ---------CCcEEEEEe----cCCceEEEEEccCCcEEEEEE
Q psy9319         125 ---------SGKKVYDIC----IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       125 ---------~~~~~~~~~----~~~~V~~l~fspdg~~l~s~s  154 (432)
                               +..++..+.    .+.+|.+..|.++|.+++.+|
T Consensus       105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence                     112344332    346789999999998777554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.87  E-value=0.74  Score=43.25  Aligned_cols=153  Identities=10%  Similarity=0.092  Sum_probs=82.8

Q ss_pred             CCCCC-cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC-CcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy9319           1 MEGQN-FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH-PVTCICIEFDPTGKYFAVGSKDALVSL   78 (432)
Q Consensus         1 ~~g~n-~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~sgs~dg~I~i   78 (432)
                      |||.. -+..++|+|+...+++.  .|....   +...+. +|+.+..+.-. .+..-.+++..++.++++.-.++.+.+
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV--~d~~~~---i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAV--QDEPGE---IYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEE--ETTTTE---EEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEE--ECCCCE---EEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            35554 38999999987655333  233322   333343 57777766533 356788999888877776656889999


Q ss_pred             EeCCCCe------eEEEEe-----eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC---CcEEEEEe---------cC
Q psy9319          79 WDAAELT------CIRTFQ-----RLDWPVRAISFSHDGALIASGSEDLTIDIAHVES---GKKVYDIC---------IQ  135 (432)
Q Consensus        79 wd~~~~~------~~~~~~-----~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~---~~~~~~~~---------~~  135 (432)
                      +++....      ....+.     .+...+-.++|+|.+..|+.+....-..++.+..   +..+....         ..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            9884211      111221     2445689999999877777777665566665543   22222221         23


Q ss_pred             CceEEEEEccCC-cEEEEEECCCeE
Q psy9319         136 AATFTVAWHPKQ-YLLAYACDDKYD  159 (432)
Q Consensus       136 ~~V~~l~fspdg-~~l~s~s~d~~I  159 (432)
                      ..+.+++++|.. .+++.+..+..|
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l  195 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLL  195 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeE
Confidence            347889999954 566666666663

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2395|consensus

Probab=95.76  E-value=0.2  Score=50.79  Aligned_cols=123  Identities=15%  Similarity=0.057  Sum_probs=81.4

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCC--EE-----EEEeCCCeEEEEeCCCCee--EEEEeeC----CCCEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGK--YF-----AVGSKDALVSLWDAAELTC--IRTFQRL----DWPVRAI  100 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~--~L-----~sgs~dg~I~iwd~~~~~~--~~~~~~h----~~~V~~i  100 (432)
                      ++-.|+..|+.+.....|.. |+-+.+.|++.  .|     +.|-.+..|+-||.+-...  +..-.+|    .....|+
T Consensus       358 l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~  436 (644)
T KOG2395|consen  358 LYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCF  436 (644)
T ss_pred             ceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccccee
Confidence            34456678888888877766 67777788642  22     3456688899999873222  2222223    2234555


Q ss_pred             EEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319         101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus       101 ~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      +-..+| +|+.||.+|.|++||-..-..-..++ ...+|..+..+.+|.+|+..+ +.++
T Consensus       437 aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyL  494 (644)
T KOG2395|consen  437 ATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYL  494 (644)
T ss_pred             eecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEE
Confidence            555454 79999999999999973333333344 678899999999999988665 4453

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.69  E-value=0.17  Score=51.25  Aligned_cols=103  Identities=13%  Similarity=0.035  Sum_probs=65.9

Q ss_pred             EEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-----------CeE
Q psy9319          55 CICIEFDPTGKYFAVG-SKDA----LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED-----------LTI  118 (432)
Q Consensus        55 V~~l~~spdg~~L~sg-s~dg----~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-----------g~V  118 (432)
                      +..+.+||+|++++.+ +..|    .|+++|+.+|..+........ ..++.|.+++..|+....+           ..|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3367889999988755 3344    599999999977543321111 2239999998877655432           248


Q ss_pred             EEEeCCCCcE--EEEEe--cCCc-eEEEEEccCCcEEEEEECCCe
Q psy9319         119 DIAHVESGKK--VYDIC--IQAA-TFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       119 ~vwd~~~~~~--~~~~~--~~~~-V~~l~fspdg~~l~s~s~d~~  158 (432)
                      +.|.+.++..  ...+.  .... ...+..++|+++|+..+..+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~  249 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT  249 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc
Confidence            8888877643  23343  2233 567889999998886654443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.56  E-value=0.048  Score=37.05  Aligned_cols=33  Identities=24%  Similarity=0.497  Sum_probs=29.2

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      ...|.+++|||...+||.|+.+|.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356899999999999999999999999998 444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.51  E-value=1.6  Score=42.68  Aligned_cols=122  Identities=13%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCeeEEEEeeCC-------C
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK----------DALVSLWDAAELTCIRTFQRLD-------W   95 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~----------dg~I~iwd~~~~~~~~~~~~h~-------~   95 (432)
                      .+.+.|..+++.+-.+...  ....+..||+|+.+++++.          .-.|.+||..+..+...+.-..       .
T Consensus        18 rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             eEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            5778888899888877653  2334667999999887542          2359999999887765443211       1


Q ss_pred             CEEEEEEeeCCCEEEEEe--CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          96 PVRAISFSHDGALIASGS--EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        96 ~V~~i~~spdg~~l~sgs--~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ....+++|.||++++...  -..+|.|.|+..++.+..+..++.+.-.-+.+  .-+.+-|.||.
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGs  158 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGS  158 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSC
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCc
Confidence            223467889999887664  45689999999999998887776554443333  34667788888

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649|consensus

Probab=95.49  E-value=0.69  Score=43.10  Aligned_cols=142  Identities=8%  Similarity=-0.038  Sum_probs=82.4

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      -+++.+..+|.....+..-..--......+++..+..|+.|+..+..|..+..++...+...+...+.+..|-...|+.+
T Consensus        74 ~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen   74 GLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             cEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence            44555667776666655432211233457789999999999999999999988887776555444555666733345555


Q ss_pred             eCCCeEEEEeCCCC--cEEEEEecCCceEE--EEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCce
Q psy9319         113 SEDLTIDIAHVESG--KKVYDICIQAATFT--VAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       113 s~dg~V~vwd~~~~--~~~~~~~~~~~V~~--l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      ...|.|.--...++  ..+......+++.+  ++.   +..+..+.-||.+.-+|..--.+|...++-.
T Consensus       154 ~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~~sG~qvwr~~t~Gp  219 (354)
T KOG4649|consen  154 ITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFDESGRQVWRPATKGP  219 (354)
T ss_pred             eccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEcCCCcEEEeecCCCc
Confidence            55666655555444  22222223334332  111   2334445556665555543356776665443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.48  E-value=0.048  Score=37.02  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEe
Q psy9319         134 IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVF  170 (432)
Q Consensus       134 ~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vw  170 (432)
                      ....|..++|+|...+||.++.+|.|.+|.++--++|
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW   46 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence            4567999999999999999999999666655443444

>KOG2079|consensus

Probab=95.32  E-value=0.059  Score=58.71  Aligned_cols=67  Identities=13%  Similarity=0.293  Sum_probs=55.4

Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEE---EEeeCCCEEEEEeCCCe
Q psy9319          51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI---SFSHDGALIASGSEDLT  117 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i---~~spdg~~l~sgs~dg~  117 (432)
                      -.++|++++|+.+|..++.|-.+|.|.+||+..+..++.+..|..++.++   .+..++..++++...|.
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            35799999999999999999999999999999999988888776665544   44556677888877775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.32  E-value=0.93  Score=42.75  Aligned_cols=147  Identities=16%  Similarity=0.055  Sum_probs=87.3

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd-~~~~   84 (432)
                      .+...+++|++..+++....+.....+.   +.. .+.....+.+  ..++...|+++|...+....+...+++. ...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~---~~~-~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYV---GPA-GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEE---EcC-CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            3577889999987744443333333333   221 2222222333  3678889999987777766666666663 3333


Q ss_pred             eeE-EEEeeC--CCCEEEEEEeeCCCEEEEEe---CCCeEEEEeCC---CCcE------EEEEe-cCCceEEEEEccCCc
Q psy9319          85 TCI-RTFQRL--DWPVRAISFSHDGALIASGS---EDLTIDIAHVE---SGKK------VYDIC-IQAATFTVAWHPKQY  148 (432)
Q Consensus        85 ~~~-~~~~~h--~~~V~~i~~spdg~~l~sgs---~dg~V~vwd~~---~~~~------~~~~~-~~~~V~~l~fspdg~  148 (432)
                      ... ..+...  .+.|..+.+||||..++...   .++.|.+--+.   .+..      +.... ....+..+.|.+++.
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            221 122211  12899999999999888665   35677766543   2311      11111 345789999999998


Q ss_pred             EEEEEECCCe
Q psy9319         149 LLAYACDDKY  158 (432)
Q Consensus       149 ~l~s~s~d~~  158 (432)
                      +++.+...+.
T Consensus       179 L~V~~~~~~~  188 (253)
T PF10647_consen  179 LVVLGRSAGG  188 (253)
T ss_pred             EEEEeCCCCC
Confidence            8887765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4499|consensus

Probab=95.13  E-value=1.1  Score=41.23  Aligned_cols=138  Identities=13%  Similarity=0.144  Sum_probs=84.1

Q ss_pred             CcccccccCCCCcceeeeeeec----CCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTD----ISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLW   79 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D----~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iw   79 (432)
                      |..++...+|+|..+ .....|    .....+.++.|-  .+..+..+...-+--+.++|+.+.+.++ +-+.+-+|.-|
T Consensus       109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~--~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWL--AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCCcee-eeeeccccccccccccEEEEec--cCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            445777889999876 332222    222334444442  2333333444344456788988766554 45667778778


Q ss_pred             e--CCCCee-----EEEEeeC---C-CCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEcc
Q psy9319          80 D--AAELTC-----IRTFQRL---D-WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHP  145 (432)
Q Consensus        80 d--~~~~~~-----~~~~~~h---~-~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fsp  145 (432)
                      |  ..+|..     +..+...   . -..-.++...+|.+.+++-..++|...|..+|+.+..+. ....|++++|--
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            7  445432     2222210   1 112234445577877777788899999999999999987 556699999963

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.10  E-value=0.52  Score=47.42  Aligned_cols=128  Identities=9%  Similarity=-0.031  Sum_probs=73.9

Q ss_pred             EEEEeecCcceeeEEEccCCc--CEE-----EEEEcC--CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEE-EEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPV--TCI-----CIEFDP--TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRA-ISF  102 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~--~V~-----~l~~sp--dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~-i~~  102 (432)
                      .+..+|..+|+.+........  .+.     .+.-+|  ++..++.++.++.+.-+|..+|+.+-..... +.+.+ ...
T Consensus        80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v  158 (394)
T PRK11138         80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVV  158 (394)
T ss_pred             eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEE
Confidence            455567777777665543210  000     001112  3556777888999999999999887665533 22221 111


Q ss_pred             eeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEE--EEcc--CCcEEEEEECCCeEEEEe
Q psy9319         103 SHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTV--AWHP--KQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       103 spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l--~fsp--dg~~l~s~s~d~~I~vwd  163 (432)
                        .+..++.++.++.|..+|..+|+.+.......+...+  .-+|  .+..++.++.++.+..+|
T Consensus       159 --~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d  221 (394)
T PRK11138        159 --SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL  221 (394)
T ss_pred             --ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence              2446777888999999999999998887633221100  0112  123456677778744333

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.01  E-value=1  Score=45.36  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=71.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----C---------------------------------------eeEEEE
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAE----L---------------------------------------TCIRTF   90 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~----~---------------------------------------~~~~~~   90 (432)
                      .|+++.|+++..-|+.|...|.|.||-...    +                                       .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            467777777777777777777777763221    0                                       012222


Q ss_pred             eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--c-------CCceEEEEEcc-----CC---cEEEEE
Q psy9319          91 QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--I-------QAATFTVAWHP-----KQ---YLLAYA  153 (432)
Q Consensus        91 ~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~-------~~~V~~l~fsp-----dg---~~l~s~  153 (432)
                      ....++|++++.| |-.++|.|..+|.+.|.|++....+..-.  .       ...|.++.|+.     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3346799999987 55589999999999999998888777643  1       22477788763     33   578888


Q ss_pred             ECCCeEEEEeC
Q psy9319         154 CDDKYDRKQDC  164 (432)
Q Consensus       154 s~d~~I~vwd~  164 (432)
                      ...|.+.+|.+
T Consensus       162 Tn~G~v~~fkI  172 (395)
T PF08596_consen  162 TNSGNVLTFKI  172 (395)
T ss_dssp             ETTSEEEEEEE
T ss_pred             eCCCCEEEEEE
Confidence            88899777654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.93  E-value=0.85  Score=47.17  Aligned_cols=115  Identities=10%  Similarity=0.063  Sum_probs=72.9

Q ss_pred             cCCcCEEEEEEcCC----CCEEEEEeCCCeEEEEeCC-----CCeeEEEEeeCC---C--CEEEEEEeeCCCEEEEEeCC
Q psy9319          50 AHPVTCICIEFDPT----GKYFAVGSKDALVSLWDAA-----ELTCIRTFQRLD---W--PVRAISFSHDGALIASGSED  115 (432)
Q Consensus        50 ~h~~~V~~l~~spd----g~~L~sgs~dg~I~iwd~~-----~~~~~~~~~~h~---~--~V~~i~~spdg~~l~sgs~d  115 (432)
                      |.-..|..+.|+|-    ...|++......|.||.+.     ..+.+.....+-   .  -...+.|+|....|+.-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            33355889999994    3345556667789999875     223332222221   1  12357799988877766655


Q ss_pred             CeEEEEeCCCC--cEEEEEecCCceEEEEEccCCcEEEEEECC-CeEEEEeC
Q psy9319         116 LTIDIAHVESG--KKVYDICIQAATFTVAWHPKQYLLAYACDD-KYDRKQDC  164 (432)
Q Consensus       116 g~V~vwd~~~~--~~~~~~~~~~~V~~l~fspdg~~l~s~s~d-~~I~vwd~  164 (432)
                      ..-.++++...  .....+...+-|.|.+|.+||..|+++-.. =.-++||-
T Consensus       134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            44455666533  334455678889999999999888776433 23567875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.89  E-value=1  Score=45.22  Aligned_cols=123  Identities=9%  Similarity=-0.055  Sum_probs=74.1

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCC-CEEEEEEeeCCCEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIAS  111 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~i~~spdg~~l~s  111 (432)
                      .+...|..+|+.+.....  +....+.  ..+..++.++.+|.+..+|..+|..+-....-.. ...+...  .+..++.
T Consensus       267 ~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v  340 (394)
T PRK11138        267 NLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVV  340 (394)
T ss_pred             eEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEE
Confidence            344456666665544321  1111111  2456778888899999999998876543321111 1122222  3567888


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEec-CCceEE-EEEccCCcEEEEEECCCeEEEEe
Q psy9319         112 GSEDLTIDIAHVESGKKVYDICI-QAATFT-VAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~~-~~~V~~-l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ++.+|.|.+.|..+|+.+..... ...+.+ ..+  .+..|+.++.||.+..++
T Consensus       341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        341 GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            99999999999999998887753 233332 222  244677788999854443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.88  E-value=0.13  Score=55.76  Aligned_cols=70  Identities=21%  Similarity=0.327  Sum_probs=53.5

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                      ....+|++-+.+| +||.|+.+|.|++||-.....-..|.+-..+|.+|+.+.||++++..|. ..+.+++.
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            3457788877777 7899999999999996543334455677889999999999998876654 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK10115 protease 2; Provisional

Probab=94.84  E-value=2.3  Score=46.16  Aligned_cols=114  Identities=8%  Similarity=-0.031  Sum_probs=69.4

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC------CeEEEEe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD------ALVSLWD   80 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d------g~I~iwd   80 (432)
                      +..+.++|++..++.+ .+......+.+.+.|..++..+...-....  ..++|++|+..|+.+..+      ..|..++
T Consensus       129 l~~~~~Spdg~~la~~-~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        129 LGGMAITPDNTIMALA-EDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EeEEEECCCCCEEEEE-ecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4566789999977444 444445678888889887764322212222  458999998876655432      3678888


Q ss_pred             CCCC--eeEEEEeeCCCCEEEEEEee-CCCEEEEEeC---CCeEEEEeC
Q psy9319          81 AAEL--TCIRTFQRLDWPVRAISFSH-DGALIASGSE---DLTIDIAHV  123 (432)
Q Consensus        81 ~~~~--~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~---dg~V~vwd~  123 (432)
                      +.++  .-...+........-..+.+ ++.+++..+.   ++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8877  33444443333343233334 8887665443   457888884

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.75  E-value=3.8  Score=41.59  Aligned_cols=70  Identities=10%  Similarity=0.049  Sum_probs=45.4

Q ss_pred             cccCCCCcceeeeeeec-C-----CCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319          10 LGLNPRPSLYQSSVLTD-I-----SPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D-~-----~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      ++..|.|..+++. ..+ .     ......|.+++. .|+.+..+.-..+.+.++.|+.+. .|+....||.+++||+.
T Consensus        34 va~a~~gGpIAi~-~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGGPIAII-RDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCceEEEE-ecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            4556766665333 222 1     111125777765 566777665555899999998864 55667789999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.64  E-value=0.98  Score=42.69  Aligned_cols=163  Identities=12%  Similarity=0.114  Sum_probs=95.5

Q ss_pred             ccccCCCCcceeeeeeecCCCceeEEEEeecCcc-eeeEEEccCCcCEEEEEEcCCCCEEEEEeC---------------
Q psy9319           9 LLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL-EEQNILKAHPVTCICIEFDPTGKYFAVGSK---------------   72 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~sgs~---------------   72 (432)
                      .-.|||++.++.++ -.|-...-+.|-+||...+ +.+-.+..|.-.-..+.|.+||+.++.+..               
T Consensus       118 HGvfs~dG~~LYAT-Endfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl  196 (366)
T COG3490         118 HGVFSPDGRLLYAT-ENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL  196 (366)
T ss_pred             ccccCCCCcEEEee-cCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence            45689999988555 4555566677888887643 445667788877788999999999887643               


Q ss_pred             ---CCeEEEEeCCCCeeEEE--Ee--eCCCCEEEEEEeeCCCEEEEEeCCC-----eEEEEeCCCCcEEEEEe-------
Q psy9319          73 ---DALVSLWDAAELTCIRT--FQ--RLDWPVRAISFSHDGALIASGSEDL-----TIDIAHVESGKKVYDIC-------  133 (432)
Q Consensus        73 ---dg~I~iwd~~~~~~~~~--~~--~h~~~V~~i~~spdg~~l~sgs~dg-----~V~vwd~~~~~~~~~~~-------  133 (432)
                         ..++.+.|..+|..+..  +.  .+.-.|+.++..+||..++.+-..|     --.+=-...|+++.-+.       
T Consensus       197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~  276 (366)
T COG3490         197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA  276 (366)
T ss_pred             hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence               12344555455554322  22  2345677888888877665443221     11111112334433332       


Q ss_pred             -cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceee
Q psy9319         134 -IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       134 -~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~  179 (432)
                       ...-|-+++.+.+..+++..+..|.       ..-+||..+|.++.
T Consensus       277 ~~anYigsiA~n~~~glV~lTSP~GN-------~~vi~da~tG~vv~  316 (366)
T COG3490         277 AFANYIGSIAANRRDGLVALTSPRGN-------RAVIWDAATGAVVS  316 (366)
T ss_pred             HHHhhhhheeecccCCeEEEecCCCC-------eEEEEEcCCCcEEe
Confidence             1223566777765555555555443       15568877777654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.55  E-value=0.96  Score=42.97  Aligned_cols=114  Identities=13%  Similarity=0.109  Sum_probs=80.5

Q ss_pred             EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeC-CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL-DWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        48 l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                      +.|-...++++.|+|+.+.|++......-.|+=...|..+.++.-. -.....|.+.-+|.+.++--.++.+.++.+..+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3455566999999999999988888877777766678887776521 233456778878887777778888888877665


Q ss_pred             cEEEE-----Ee-----c-CCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319         127 KKVYD-----IC-----I-QAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus       127 ~~~~~-----~~-----~-~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      ..+..     ++     + ..+...++|+|....|+.+=.-.-+.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I  206 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGI  206 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEE
Confidence            33222     11     2 445778999998887777766655333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.37  E-value=2.7  Score=43.74  Aligned_cols=135  Identities=11%  Similarity=0.101  Sum_probs=78.9

Q ss_pred             EEEEeecCcceeeEEEcc--CCc----CEEEEEEc----CCCC---EEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEE
Q psy9319          33 DFKFKEHHKLEEQNILKA--HPV----TCICIEFD----PTGK---YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRA   99 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~--h~~----~V~~l~~s----pdg~---~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~   99 (432)
                      .+...|..+|+....++.  |..    ......+.    -+|.   .++.++.+|.+..+|..+|+.+-.....   ...
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~  333 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQP  333 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccc
Confidence            466678888888877642  210    00001111    1343   5778888999999999999887655421   112


Q ss_pred             EEEeeCCCEEEEE------------------eCCCeEEEEeCCCCcEEEEEecC---------CceEEEEEccCCcEEEE
Q psy9319         100 ISFSHDGALIASG------------------SEDLTIDIAHVESGKKVYDICIQ---------AATFTVAWHPKQYLLAY  152 (432)
Q Consensus       100 i~~spdg~~l~sg------------------s~dg~V~vwd~~~~~~~~~~~~~---------~~V~~l~fspdg~~l~s  152 (432)
                      ++.+|  ..++.+                  ..+|.|...|+.+|+.+......         .+...-...-.+..|++
T Consensus       334 ~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~  411 (488)
T cd00216         334 MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA  411 (488)
T ss_pred             cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE
Confidence            33344  223322                  23578999999999988877633         11111111124577888


Q ss_pred             EECCCeEEEEeCCceEEeecCCCceeee
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPIKKR  180 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~~~~  180 (432)
                      ++.||.        +..+|..+|+.+-+
T Consensus       412 g~~dG~--------l~ald~~tG~~lW~  431 (488)
T cd00216         412 GAADGY--------FRAFDATTGKELWK  431 (488)
T ss_pred             ECCCCe--------EEEEECCCCceeeE
Confidence            889998        55566666655443

The alignment model contains an 8-bladed beta-propeller.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.26  E-value=1.6  Score=43.59  Aligned_cols=147  Identities=10%  Similarity=0.041  Sum_probs=75.0

Q ss_pred             CcccccccCCCCcceeeeeee-----cCCCcee-EEEEeecC--ccee--eEEEccCCcCEEEEEEcCCCCEEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLT-----DISPKQL-DFKFKEHH--KLEE--QNILKAHPVTCICIEFDPTGKYFAVGSKDA   74 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~-----D~~~~~~-~i~~~d~~--~~~~--~~~l~~h~~~V~~l~~spdg~~L~sgs~dg   74 (432)
                      .....++|.+++.++++....     ....... .|.+.+..  +|+.  ...+-........+++.++| +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            344678899999987443211     0000111 23333222  2322  23333333456789999988 444 44443


Q ss_pred             eEEEEeCCC-----Cee--E-EEEee----CCCCEEEEEEeeCCCEEEEEeCC-------------------CeEEEEeC
Q psy9319          75 LVSLWDAAE-----LTC--I-RTFQR----LDWPVRAISFSHDGALIASGSED-------------------LTIDIAHV  123 (432)
Q Consensus        75 ~I~iwd~~~-----~~~--~-~~~~~----h~~~V~~i~~spdg~~l~sgs~d-------------------g~V~vwd~  123 (432)
                      ..++.|...     +..  + ..+..    +......+.|.|||.+.++.+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333445532     121  1 12221    12347789999999865544421                   34555555


Q ss_pred             CCCcEEEEEe-cCCceEEEEEccCCcEEEEEE
Q psy9319         124 ESGKKVYDIC-IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       124 ~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s  154 (432)
                      .++. +..+. .......++|+|+|.++++-.
T Consensus       172 dg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence            5443 23333 223356789999998876544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.24  E-value=2.4  Score=39.79  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=70.0

Q ss_pred             EEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeEEEEeeC-CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q psy9319          47 ILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRL-DWPVRAISFSHDGALIASGSEDLTIDIAHVE  124 (432)
Q Consensus        47 ~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~  124 (432)
                      .+.+-...++.++|+|+.. ++++....+.|..++.. |..+..+.-. .+..-.|++.-++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4556666799999999755 55556667788888875 7777766533 3568889998777776666568999999884


Q ss_pred             CCc------EEEEEe------cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319         125 SGK------KVYDIC------IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus       125 ~~~------~~~~~~------~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      ...      ....+.      ....+..++|+|.+..|+.+-......+|
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~  144 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY  144 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence            321      112222      34558999999988777777665553333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.20  E-value=2.5  Score=40.97  Aligned_cols=106  Identities=20%  Similarity=0.275  Sum_probs=57.8

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe-CCCCcE
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH-VESGKK  128 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd-~~~~~~  128 (432)
                      .-.+.+..+.-++||.++++++.-....-||.-...-...-......|.+|.|+|++.+++.+ ..|.|++=+ ...+..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            344678888889999988887655555678764222222222345789999999998876644 788888877 222222


Q ss_pred             EEE--Ee---cCCceEEEEEccCCcEEEEEECC
Q psy9319         129 VYD--IC---IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       129 ~~~--~~---~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      ...  ..   ..-.+..++|.+++...++|+..
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            222  11   22347899999987777766543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.11  E-value=5.3  Score=37.69  Aligned_cols=167  Identities=14%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC-cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP-VTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.+.+.|..++.++-+++.    ...-.++.+|..+++......-.. .---.++... +....-.=.++...+||..+.
T Consensus        46 FTQGL~~~~~g~LyESTG~----yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGL----YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             EEEEEEEEETTEEEEEECS----TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTT
T ss_pred             cCccEEecCCCEEEEeCCC----CCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccc
Confidence            3455555555555534432    234467777888887655433221 1112333332 233334456788999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---cCCc---eEEEEEccCCcEEEEEECCCe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAA---TFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~---V~~l~fspdg~~l~s~s~d~~  158 (432)
                      +.+.++. ..+.=+.++  .|+..|+.......+.++|..+.+....+.   ...+   +.-+.|. +|.+.|       
T Consensus       121 ~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyA-------  189 (264)
T PF05096_consen  121 KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYA-------  189 (264)
T ss_dssp             EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEE-------
T ss_pred             eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEE-------
Confidence            8888876 344556665  578888888888899999999888777765   2222   3445554 343332       


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCchhhhHH
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKA  192 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a  192 (432)
                       .||....|...|..+|.++..+.   ++.+...
T Consensus       190 -NVW~td~I~~Idp~tG~V~~~iD---ls~L~~~  219 (264)
T PF05096_consen  190 -NVWQTDRIVRIDPETGKVVGWID---LSGLRPE  219 (264)
T ss_dssp             -EETTSSEEEEEETTT-BEEEEEE----HHHHHH
T ss_pred             -EeCCCCeEEEEeCCCCeEEEEEE---hhHhhhc
Confidence             25555668888999998877653   4444443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.09  E-value=0.95  Score=46.31  Aligned_cols=118  Identities=10%  Similarity=0.134  Sum_probs=65.0

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------eeEEEEeeCCCCEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL-----------TCIRTFQRLDWPVRAIS  101 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~-----------~~~~~~~~h~~~V~~i~  101 (432)
                      .+.+||..+++.+..+...  +|..+.||++|.+++..+.+ ++.|++....           .....+..-...|.+..
T Consensus       127 ~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~  203 (443)
T PF04053_consen  127 FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGC  203 (443)
T ss_dssp             EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEE
T ss_pred             CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEE
Confidence            4788899999999998753  48999999999999988855 6777765422           02334433356788888


Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319         102 FSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       102 ~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      |.-+ .+++|. .. .++.  +.+|..-.......+++=+.+.|....++....|+.
T Consensus       204 W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~  255 (443)
T PF04053_consen  204 WVED-CFIYTT-SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN  255 (443)
T ss_dssp             EETT-EEEEE--TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--
T ss_pred             EEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC
Confidence            8766 333333 33 5555  334443322234556677777777677777777777

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.53  E-value=5.8  Score=41.69  Aligned_cols=54  Identities=9%  Similarity=0.130  Sum_probs=36.3

Q ss_pred             EEEeecCcceeeEEEccCCcCEE---------EEEEcCCCC---EEEEEeCCCeEEEEeCCCCeeE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCI---------CIEFDPTGK---YFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~---------~l~~spdg~---~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      +...|..+|+..-.++.....+.         -+.+..+|.   .++.+..+|.+.+.|..+|+.+
T Consensus       273 ~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       273 IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            33457788888777664222222         222334665   7789999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.47  E-value=2  Score=40.47  Aligned_cols=98  Identities=12%  Similarity=0.081  Sum_probs=64.0

Q ss_pred             CEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe-CCCCcEE
Q psy9319          54 TCICIEFDPTGKYFAVGS---KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH-VESGKKV  129 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd-~~~~~~~  129 (432)
                      .+.+.++|++|..++...   ....+.++..... ....+.  ...+...+|++++..++....+....++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678999999999887766   3345656654422 222222  23778889999988777777666666663 3333322


Q ss_pred             E-EEe---cCCceEEEEEccCCcEEEEEE
Q psy9319         130 Y-DIC---IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       130 ~-~~~---~~~~V~~l~fspdg~~l~s~s  154 (432)
                      . ...   ..+.|..+.+||||..++...
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEE
Confidence            2 122   222899999999998877766

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630|consensus

Probab=93.10  E-value=0.26  Score=54.24  Aligned_cols=167  Identities=10%  Similarity=0.060  Sum_probs=97.6

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      -.++..++.|+|.-....+.|..|+.+....+.+.    ...+..+ .....++|++|+|-|..++.|-..|++.-|-..
T Consensus       154 k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~----~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  154 KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL----AQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             cccccccccccCCccchhhhhccccchhhhhhhhh----hhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            34667888999988777778888887766555431    1111121 235678999999999999999999999888764


Q ss_pred             CCeeEEEEeeC----CCCEEEEEEeeCCCEEEEEe-CCC-----e---EEEE-----------eCCCCcE----EEEEec
Q psy9319          83 ELTCIRTFQRL----DWPVRAISFSHDGALIASGS-EDL-----T---IDIA-----------HVESGKK----VYDICI  134 (432)
Q Consensus        83 ~~~~~~~~~~h----~~~V~~i~~spdg~~l~sgs-~dg-----~---V~vw-----------d~~~~~~----~~~~~~  134 (432)
                       +.....+.+.    ...|.+++|-....++++-+ .++     .   .+++           ....+.+    +....|
T Consensus       229 -leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~~~k~kp~g~~nF~E~~d~tppfg~~~rq~h  307 (1405)
T KOG3630|consen  229 -LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQKMYKIKPDGSANFQETFDITPPFGQIVRQPH  307 (1405)
T ss_pred             -cceeecccCCCcCCCcceeEEEEecceeEEEEecccccCcCCchhhhhccccccCcceeeeccccCCCCCccccCccch
Confidence             3322233221    35789999987666655432 111     0   1111           1111111    111123


Q ss_pred             CCceEEEEEccCC-cEEEEEE-CCCeEEEEeC-CceEEeecCCC
Q psy9319         135 QAATFTVAWHPKQ-YLLAYAC-DDKYDRKQDC-GNLKVFGFLPE  175 (432)
Q Consensus       135 ~~~V~~l~fspdg-~~l~s~s-~d~~I~vwd~-~~i~vwd~~~~  175 (432)
                      ...++-..|.|+. .++++++ ...-|.||+. .....|....+
T Consensus       308 ~y~~~L~~W~~~~~~vVvvansaSsEvsila~~~qW~~w~~vde  351 (1405)
T KOG3630|consen  308 MYKVTLSGWIEPDANVVVVANSASSEVSILASMKQWIEWSQVDE  351 (1405)
T ss_pred             hHHHhhhhhcccccceEEEecccccchhhhhhhcceeecccccc
Confidence            3334446787654 4444443 3444788887 55566776665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.05  E-value=3.4  Score=40.90  Aligned_cols=150  Identities=15%  Similarity=0.255  Sum_probs=87.5

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC-Cc---CEEEEEEc-CCC-CEEEEEeCCCe--
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH-PV---TCICIEFD-PTG-KYFAVGSKDAL--   75 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h-~~---~V~~l~~s-pdg-~~L~sgs~dg~--   75 (432)
                      ...+..+.|.+++..+ +....++.-+...+...|..++.+...+... .+   ......|. +++ .+|.....+|-  
T Consensus       183 ~~yl~~v~W~~d~~~l-~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h  261 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRL-WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH  261 (353)
T ss_dssp             SEEEEEEEEEETTEEE-EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred             ccCcccceecCCCcEE-EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence            3456778888888734 3333455556677777788776554443321 12   22244554 655 45555556664  


Q ss_pred             EEEEeCCCCeeEEEEeeCCCCEEE-EEEeeCCCEEE-EEeCC----CeEEEEeCCCCcEEEEEecCCce-EEEEEccCCc
Q psy9319          76 VSLWDAAELTCIRTFQRLDWPVRA-ISFSHDGALIA-SGSED----LTIDIAHVESGKKVYDICIQAAT-FTVAWHPKQY  148 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~~~V~~-i~~spdg~~l~-sgs~d----g~V~vwd~~~~~~~~~~~~~~~V-~~l~fspdg~  148 (432)
                      |.+++..++. ...+......|.. +.|++++..|+ ++..+    ..|+.-++.++..+..+...... ..+.|||+|+
T Consensus       262 ly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  262 LYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK  340 (353)
T ss_dssp             EEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred             EEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence            5566766555 4466666677855 67888777665 44442    35666677734455556533333 5899999998


Q ss_pred             EEEEEEC
Q psy9319         149 LLAYACD  155 (432)
Q Consensus       149 ~l~s~s~  155 (432)
                      +++..+.
T Consensus       341 y~v~~~s  347 (353)
T PF00930_consen  341 YYVDTYS  347 (353)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            8876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.81  E-value=3  Score=43.33  Aligned_cols=100  Identities=13%  Similarity=0.043  Sum_probs=58.9

Q ss_pred             EEEEeecCcceeeEEEccCCc------CEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCC--EEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPV------TCI--CIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWP--VRAISF  102 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~------~V~--~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~--V~~i~~  102 (432)
                      .+...|..+|+.+..+.....      .+.  .++.. ++..++.++.++.|.-+|..+|+.+-.+......  -..+.-
T Consensus        72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~s  150 (488)
T cd00216          72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTG  150 (488)
T ss_pred             cEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecC
Confidence            344556667776665543222      000  00111 2257778888999999999999987666533221  011122


Q ss_pred             ee--CCCEEEEEe---------CCCeEEEEeCCCCcEEEEEe
Q psy9319         103 SH--DGALIASGS---------EDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus       103 sp--dg~~l~sgs---------~dg~V~vwd~~~~~~~~~~~  133 (432)
                      +|  .+..++.++         .++.|..+|..+|+.+....
T Consensus       151 sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         151 APTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             CCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            22  234455554         36789999999999888775

The alignment model contains an 8-bladed beta-propeller.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.49  E-value=0.41  Score=31.69  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=26.8

Q ss_pred             CCEEEEEEeeCC---CEEEEEeCCCeEEEEeCCCC
Q psy9319          95 WPVRAISFSHDG---ALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        95 ~~V~~i~~spdg---~~l~sgs~dg~V~vwd~~~~  126 (432)
                      +.|+++.|||.+   .+|+.+-.-|.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   48888888899999999853

It contains a characteristic DLL sequence motif.

>KOG3630|consensus

Probab=92.45  E-value=0.26  Score=54.27  Aligned_cols=99  Identities=18%  Similarity=0.069  Sum_probs=68.0

Q ss_pred             cCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE
Q psy9319          53 VTCICIEFDPTG-KYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD  131 (432)
Q Consensus        53 ~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~  131 (432)
                      ....|+.|+|.- ...+.+..|+.|.+.-+.-......-..-...+++++|+|.|..++.|-..|++.-|-. +++....
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~  234 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSE  234 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeec
Confidence            445688899843 34566777888888877633222111234567899999999999999999999988865 3333333


Q ss_pred             Ee-----cCCceEEEEEccCCcEEEE
Q psy9319         132 IC-----IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus       132 ~~-----~~~~V~~l~fspdg~~l~s  152 (432)
                      +.     ....|.+++|-....++++
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEE
Confidence            32     2466899999876666654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.41  E-value=9.8  Score=35.83  Aligned_cols=113  Identities=13%  Similarity=0.071  Sum_probs=71.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEE--------------EeeCCCCEEEEE--EeeCCCEEEEEeCCCe
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT--------------FQRLDWPVRAIS--FSHDGALIASGSEDLT  117 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~--------------~~~h~~~V~~i~--~spdg~~l~sgs~dg~  117 (432)
                      +|..+...|+-+.|++-+ |+.+.++++........              -......+..++  -.+.+...+.......
T Consensus        37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            399999999877777665 59999999875433221              111223444444  1123434444444558


Q ss_pred             EEEEeCCCC-----cEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCcee
Q psy9319         118 IDIAHVESG-----KKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIK  178 (432)
Q Consensus       118 V~vwd~~~~-----~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~  178 (432)
                      |.+|.....     .....+..+..+.+++|.  +..++.|..++         ..+.|+.++...
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~---------f~~idl~~~~~~  170 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG---------FYLIDLNTGSPS  170 (275)
T ss_pred             EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc---------eEEEecCCCCce
Confidence            888877653     456677788899999998  56677777665         566666655443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=92.37  E-value=2.2  Score=41.66  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=70.4

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCeeE--EEEeeC----------CCCEEEEEEeeCCCEEEEEe---CC-------C
Q psy9319          59 EFDPTGKYFAVGSKDALVSLWDAAELTCI--RTFQRL----------DWPVRAISFSHDGALIASGS---ED-------L  116 (432)
Q Consensus        59 ~~spdg~~L~sgs~dg~I~iwd~~~~~~~--~~~~~h----------~~~V~~i~~spdg~~l~sgs---~d-------g  116 (432)
                      +++..+..++..+.+|.|+-.|+......  ..+.--          .+.-.-+++++....|+..-   .+       .
T Consensus       190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            34444555555677888887777644321  111100          01222366666444444321   11       2


Q ss_pred             eEEEEeCCCCcEEEEEecCCceEEEEEccCCc-EEEEEE-CCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         117 TIDIAHVESGKKVYDICIQAATFTVAWHPKQY-LLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       117 ~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~-~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      .|+++|+.+++.+..+....++.+|..+.+.. +|++.+ .++.        +.+||..+|+.+....
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~--------l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGT--------LDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTE--------EEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCe--------EEEEeCcCCcEEeehh
Confidence            59999999999999998777888999998775 555444 5677        8888888888777654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.83  E-value=1.4  Score=40.68  Aligned_cols=62  Identities=6%  Similarity=0.033  Sum_probs=45.4

Q ss_pred             EeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE---------------ecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         102 FSHDGALIASGSEDLTIDIAHVESGKKVYDI---------------CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       102 ~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~---------------~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +..++.++++.+.+|.+++||+.+++++..-               .....|..+.++.+|.-+++-+ +|....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            4557889999999999999999988765432               1234578888888888777655 466555554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=91.83  E-value=6.4  Score=38.29  Aligned_cols=104  Identities=19%  Similarity=0.144  Sum_probs=62.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeeEEEEee--CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC-----
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAE-LTCIRTFQR--LDWPVRAISFSHDGALIASGSEDLTIDIAHVES-----  125 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~-~~~~~~~~~--h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~-----  125 (432)
                      .++++...  +.+++.|.....|.++.... ...+..+..  ....++++.|-+++..++.+..+|.+.++....     
T Consensus       131 ~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~  208 (321)
T PF03178_consen  131 YITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS  208 (321)
T ss_dssp             SEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred             EEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
Confidence            56666554  56999998888888774432 222222222  345688888887777899999999999987652     


Q ss_pred             --Cc-E---EEEEecCCceEEE---EEcc--CC------cEEEEEECCCeE
Q psy9319         126 --GK-K---VYDICIQAATFTV---AWHP--KQ------YLLAYACDDKYD  159 (432)
Q Consensus       126 --~~-~---~~~~~~~~~V~~l---~fsp--dg------~~l~s~s~d~~I  159 (432)
                        +. .   ...+.....|.++   ++.|  .+      ..++.++.+|.|
T Consensus       209 ~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I  259 (321)
T PF03178_consen  209 RDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI  259 (321)
T ss_dssp             TTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred             ccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence              22 2   3334466668777   5555  22      247778888884

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK10115 protease 2; Provisional

Probab=91.81  E-value=3.6  Score=44.69  Aligned_cols=108  Identities=5%  Similarity=-0.074  Sum_probs=64.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC------CeEEEEe
Q psy9319          54 TCICIEFDPTGKYFAVGSKD-----ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED------LTIDIAH  122 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d------g~V~vwd  122 (432)
                      .+..+.|||||++|+.+.+.     ..|++.|+.+|..+......  .-..++|++|+..|+.+..+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            46678899999988765432     35889999887643222112  12569999998866655432      3688889


Q ss_pred             CCCC--cEEEEEec-CCceE-EEEEccCCcEEEEEECCC---eEEEEe
Q psy9319         123 VESG--KKVYDICI-QAATF-TVAWHPKQYLLAYACDDK---YDRKQD  163 (432)
Q Consensus       123 ~~~~--~~~~~~~~-~~~V~-~l~fspdg~~l~s~s~d~---~I~vwd  163 (432)
                      +.++  +....+.. ..... .+..+.++.+++..+.++   .+.+++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~  253 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD  253 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence            9887  33333432 22233 233344777666554433   455555

>KOG2444|consensus

Probab=91.79  E-value=0.4  Score=43.75  Aligned_cols=63  Identities=11%  Similarity=0.093  Sum_probs=46.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCC-CCEEEEEEeeCCCEEEEE--eCCCeEEEEeCCC
Q psy9319          63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLD-WPVRAISFSHDGALIASG--SEDLTIDIAHVES  125 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~i~~spdg~~l~sg--s~dg~V~vwd~~~  125 (432)
                      ++.+..+++.||.|+.|++..++.+.....|+ .++.....+..+..++++  |.|..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            55688899999999999999887777666676 455555555566666666  6677777777643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.75  E-value=12  Score=35.38  Aligned_cols=108  Identities=10%  Similarity=-0.021  Sum_probs=70.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCeeEEEEeeC-CCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEE
Q psy9319          55 CICIEFDPTGKYFAVGSKDA--LVSLWDAAELTCIRTFQRL-DWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVY  130 (432)
Q Consensus        55 V~~l~~spdg~~L~sgs~dg--~I~iwd~~~~~~~~~~~~h-~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~  130 (432)
                      ...+.|..+|.++-|.+.-|  .|+.+|+.+|+......-. .-.-..++..  +..|..-. .++...+||..+-+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence            45777877888888887776  7999999999876544322 1222233333  33444444 57899999999999999


Q ss_pred             EEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         131 DICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       131 ~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      .+...+.-+.++  .+|..|+.+.....|+++|..+
T Consensus       125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred             EEecCCcceEEE--cCCCEEEEECCccceEEECCcc
Confidence            998777777787  4577777776677766666543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395|consensus

Probab=91.61  E-value=0.97  Score=46.10  Aligned_cols=68  Identities=18%  Similarity=0.309  Sum_probs=50.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                      ...|.+-..+| +++.||.+|.|++||-..-..-..+.+-..+|..|..+.+|.+|+..| +..+.+.|+
T Consensus       432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  432 NFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            45666665555 789999999999999843333455677888999999999999877555 445666554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.51  E-value=1.9  Score=42.93  Aligned_cols=114  Identities=11%  Similarity=-0.065  Sum_probs=60.3

Q ss_pred             ecCcceeeEEEccCCcCE-----EEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCeeEEEEeeCC-CCEEEEEEeeCCCE
Q psy9319          38 EHHKLEEQNILKAHPVTC-----ICIEFDPTGKYFAVGSK-DA--LVSLWDAAELTCIRTFQRLD-WPVRAISFSHDGAL  108 (432)
Q Consensus        38 d~~~~~~~~~l~~h~~~V-----~~l~~spdg~~L~sgs~-dg--~I~iwd~~~~~~~~~~~~h~-~~V~~i~~spdg~~  108 (432)
                      |..+|..+..|..+.+..     +.=+|.+||+.|+.++. ||  .+.+.|+.++... .+..+. .......++|+++.
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~   94 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRA   94 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCe
Confidence            788888888887644432     23356789977666554 44  5777899888754 444332 22235667898888


Q ss_pred             EEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEc--cCCcEEEE
Q psy9319         109 IASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWH--PKQYLLAY  152 (432)
Q Consensus       109 l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fs--pdg~~l~s  152 (432)
                      ++-...+..|.-.|+.+.+....+. ....+-...|.  .++..++.
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g  141 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVG  141 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEE
Confidence            8776667789999999987655555 33334345554  35555543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.29  E-value=3.7  Score=39.88  Aligned_cols=109  Identities=13%  Similarity=0.010  Sum_probs=65.6

Q ss_pred             CEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-CCeEEEE
Q psy9319          54 TCICIEFDPTGKYFAVGSK-----------DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE-DLTIDIA  121 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-dg~V~vw  121 (432)
                      ..+.+...|+|.+.++...           -|.|+.+|. .+..+..+..+-..-+.++||||++.|+.+.. .+.|..|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            3456778888877665433           134555554 45556666665666788999999988887764 4788888


Q ss_pred             eCCC--C----cEEEEE-e-cCCceEEEEEccCCcEEEEEECCC-eEEEEe
Q psy9319         122 HVES--G----KKVYDI-C-IQAATFTVAWHPKQYLLAYACDDK-YDRKQD  163 (432)
Q Consensus       122 d~~~--~----~~~~~~-~-~~~~V~~l~fspdg~~l~s~s~d~-~I~vwd  163 (432)
                      ++..  +    ...... . ..+..-.++.+.+|.+.+++..+| .|..|+
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence            7752  1    111111 1 234455567777777775444443 533333

>KOG4441|consensus

Probab=91.11  E-value=3.3  Score=43.95  Aligned_cols=152  Identities=11%  Similarity=-0.004  Sum_probs=79.0

Q ss_pred             eeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEE-cCCCCEEEEEeCCC------eEEEEeCCCCeeEE--E
Q psy9319          19 YQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEF-DPTGKYFAVGSKDA------LVSLWDAAELTCIR--T   89 (432)
Q Consensus        19 l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~-spdg~~L~sgs~dg------~I~iwd~~~~~~~~--~   89 (432)
                      +.+.|..|+....-.+..||+.+.+-...- .......+.+. .-+|.+.++|+.++      +|..||..+.....  .
T Consensus       383 iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~  461 (571)
T KOG4441|consen  383 LYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP  461 (571)
T ss_pred             EEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC
Confidence            346667777777777777876654321111 11112222222 22677778887654      57788887654422  2


Q ss_pred             EeeCCCCEEEEEEeeCCCEEEEEeCCC-----eEEEEeCCCCcEEEEEecCCceEEEEEc-cCCcEEEEEECCCeEEEEe
Q psy9319          90 FQRLDWPVRAISFSHDGALIASGSEDL-----TIDIAHVESGKKVYDICIQAATFTVAWH-PKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        90 ~~~h~~~V~~i~~spdg~~l~sgs~dg-----~V~vwd~~~~~~~~~~~~~~~V~~l~fs-pdg~~l~s~s~d~~I~vwd  163 (432)
                      +..-..... + -.-++.+.+.|+.|+     +|..+|..+.+-...-....+...+... -++...++|+.|+.   -+
T Consensus       462 M~~~R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~---~~  536 (571)
T KOG4441|consen  462 MNTRRSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN---NN  536 (571)
T ss_pred             cccccccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc---cc
Confidence            211111111 1 122566777777665     3777888776544332222222222111 24677788887765   23


Q ss_pred             CCceEEeecCCCc
Q psy9319         164 CGNLKVFGFLPEP  176 (432)
Q Consensus       164 ~~~i~vwd~~~~~  176 (432)
                      +..+..||..+..
T Consensus       537 l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  537 LNTVECYDPETDT  549 (571)
T ss_pred             cceeEEcCCCCCc
Confidence            3446667666544

>PHA02713 hypothetical protein; Provisional

Probab=91.00  E-value=3.2  Score=43.98  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=48.3

Q ss_pred             eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC------CeEEEEeCCC-Cc--EEEEEecCC-ceEEEEEc
Q psy9319          75 LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED------LTIDIAHVES-GK--KVYDICIQA-ATFTVAWH  144 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d------g~V~vwd~~~-~~--~~~~~~~~~-~V~~l~fs  144 (432)
                      +|..||..+......-.-...........-+|.+.+.|+.+      ..+..||..+ .+  .+..++... ....+++ 
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-  511 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-  511 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-
Confidence            47778877654321111011111111223356666666643      2467899887 33  222222111 1222333 


Q ss_pred             cCCcEEEEEECCCeEEEEeCCceEEeecCCCcee
Q psy9319         145 PKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIK  178 (432)
Q Consensus       145 pdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~  178 (432)
                       +|.+.++||.++.      ..+..||..+.+-.
T Consensus       512 -~~~iyv~Gg~~~~------~~~e~yd~~~~~W~  538 (557)
T PHA02713        512 -DNTIMMLHCYESY------MLQDTFNVYTYEWN  538 (557)
T ss_pred             -CCEEEEEeeecce------eehhhcCccccccc
Confidence             6888999998883      23666777765543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.98  E-value=3.7  Score=41.57  Aligned_cols=87  Identities=16%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             eEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEee---C----------------
Q psy9319          45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH---D----------------  105 (432)
Q Consensus        45 ~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp---d----------------  105 (432)
                      ...|......+.+++.+|++++.++...=|.|.|+|+.++..+..++|-...=  +.|-.   .                
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~  377 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSR  377 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCc
Confidence            34455566678899999999988887777999999999988887777654321  11111   0                


Q ss_pred             -CC-EEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319         106 -GA-LIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus       106 -g~-~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                       .. +++-+..-|.|-||++++|..+..+.
T Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence             01 22234567889999999888877665

>KOG1916|consensus

Probab=90.85  E-value=0.088  Score=56.43  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=68.1

Q ss_pred             EccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC--CCee-----EEEEeeCCCCEEEEEEee---CCCEEEEEeCCC
Q psy9319          48 LKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA--ELTC-----IRTFQRLDWPVRAISFSH---DGALIASGSEDL  116 (432)
Q Consensus        48 l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~--~~~~-----~~~~~~h~~~V~~i~~sp---dg~~l~sgs~dg  116 (432)
                      ++|..|.|..++|.. +...+.  -.-|.+.|||++  .|..     ++....-...+.-+.|+|   ...+++.+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            345667777777743 222222  233678889876  3433     222233345566777776   556777777888


Q ss_pred             eEEEEeCCCCcEEEEE-ecCCceEE-----------EEEccCCcEEEEEECCCeEEEEeC
Q psy9319         117 TIDIAHVESGKKVYDI-CIQAATFT-----------VAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       117 ~V~vwd~~~~~~~~~~-~~~~~V~~-----------l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      .|++..+..... ..+ .|...+..           -..||||..+++++.||.+++|.+
T Consensus       206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            888776543221 111 13322222           237999999999999999888873

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.74  E-value=9.3  Score=38.77  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=41.8

Q ss_pred             CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec--CCceEEEEEccCC
Q psy9319          94 DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--QAATFTVAWHPKQ  147 (432)
Q Consensus        94 ~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~--~~~V~~l~fspdg  147 (432)
                      .+++..+++||+|+++|.-..+|.+.+.+..-.+.+..+..  ......+.|+-+.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            36899999999999999999999999998766666666652  3556677776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=90.71  E-value=3.4  Score=39.01  Aligned_cols=64  Identities=16%  Similarity=0.144  Sum_probs=45.0

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE
Q psy9319          62 PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK  128 (432)
Q Consensus        62 pdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~  128 (432)
                      ..+..|+.|+.+| |.+++.........+. +...|..+...|+-+.+++-+ |+.+.++++..-..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~   68 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP   68 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence            3578899999998 8999983222222222 333499999999877777665 49999999875443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499|consensus

Probab=90.69  E-value=1.6  Score=40.14  Aligned_cols=47  Identities=11%  Similarity=0.132  Sum_probs=40.1

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEee
Q psy9319          58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH  104 (432)
Q Consensus        58 l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp  104 (432)
                      ++...+|.+.++.-..++|..+|..+|+.+..+.-....|+|++|--
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            34466788888888889999999999999999988888999999953

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.46  E-value=2  Score=46.60  Aligned_cols=87  Identities=14%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCC----------CCee---EEEE--------eeCCCCEEEEEEeeC---CCE
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAA----------ELTC---IRTF--------QRLDWPVRAISFSHD---GAL  108 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~----------~~~~---~~~~--------~~h~~~V~~i~~spd---g~~  108 (432)
                      -.|..+.+||+|.+|+..|..|.+ |..+.          .|..   ..++        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            467888999999999988876643 33322          1111   1111        123457889999995   578


Q ss_pred             EEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCc
Q psy9319         109 IASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQY  148 (432)
Q Consensus       109 l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~  148 (432)
                      |+.-..|+++++||+...        ..+...+.|++...
T Consensus       164 l~vLtsdn~lR~y~~~~~--------~~p~~v~~~~~~~~  195 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP--------QHPWQVLSLSPGEK  195 (717)
T ss_pred             EEEEecCCEEEEEecCCC--------CCCeEEEEcccCcc
Confidence            888899999999998422        23445566665443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377|consensus

Probab=90.46  E-value=4.9  Score=40.55  Aligned_cols=103  Identities=12%  Similarity=0.085  Sum_probs=67.3

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee----EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC----IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~  125 (432)
                      ...|+|.++.||+|.+.||.--.+.+|.+++......    .+.....+..|....|+.+ .-+|..+..| +-+|.+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            4567999999999999999999999999999853322    1222233455888999865 4566555544 44554432


Q ss_pred             Cc-EEEEE-ecCCceEEEEEccCCcEEEEEE
Q psy9319         126 GK-KVYDI-CIQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       126 ~~-~~~~~-~~~~~V~~l~fspdg~~l~s~s  154 (432)
                      .. .+... .+...|....|+|+.+.+..++
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            21 12222 2667788888888876554443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.04  E-value=2  Score=39.63  Aligned_cols=63  Identities=13%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeEEEE-------e-------eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          60 FDPTGKYFAVGSKDALVSLWDAAELTCIRTF-------Q-------RLDWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        60 ~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                      +..++.+|++.+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            4557889999999999999999987764322       1       1234455555555555554443 244555553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=89.76  E-value=5.1  Score=40.42  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=53.4

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe--e------CCCCEEEEEEee-----CC---
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ--R------LDWPVRAISFSH-----DG---  106 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~--~------h~~~V~~i~~sp-----dg---  106 (432)
                      .+...+....++|++++.|.- -+++.|..+|.+.|.|++....+..-.  .      ....|+++.|+.     |+   
T Consensus        77 ~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             CchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            345556667899999999754 489999999999999998766655422  1      234688888873     22   


Q ss_pred             CEEEEEeCCCeEEEEeCC
Q psy9319         107 ALIASGSEDLTIDIAHVE  124 (432)
Q Consensus       107 ~~l~sgs~dg~V~vwd~~  124 (432)
                      -.+++|...|.+.+|.+.
T Consensus       156 i~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             eEEEEEeCCCCEEEEEEe
Confidence            366777788888888663

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.75  E-value=1.5  Score=28.98  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             cCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCC
Q psy9319          53 VTCICIEFDPTG---KYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus        53 ~~V~~l~~spdg---~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|.++.|||++   .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999844   5788877789999999985

It contains a characteristic DLL sequence motif.

>KOG4441|consensus

Probab=89.12  E-value=6.1  Score=41.93  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=62.1

Q ss_pred             CCCEEEEEeCC-C-----eEEEEeCCCCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCC-----eEEEEeCCCCcEEE
Q psy9319          63 TGKYFAVGSKD-A-----LVSLWDAAELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDL-----TIDIAHVESGKKVY  130 (432)
Q Consensus        63 dg~~L~sgs~d-g-----~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg-----~V~vwd~~~~~~~~  130 (432)
                      +|...++|+.| |     ++..||..+.+... +......-..+.... +|.+.+.|+.||     +|-.||..+.+--.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            45677888888 3     57788887665432 222222223333333 677788888886     47778876654222


Q ss_pred             EEecCCceEEEE-EccCCcEEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319         131 DICIQAATFTVA-WHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       131 ~~~~~~~V~~l~-fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                      .-.........+ -.-+|.+.++||.++.-.  .+..+..||..++.
T Consensus       411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~--~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN--CLNSVECYDPETNT  455 (571)
T ss_pred             cCCCCcceeeeEEEEECCEEEEEcCcCCCcc--ccceEEEEcCCCCc
Confidence            111111222221 123688888888777622  34456667766544

>PRK13684 Ycf48-like protein; Provisional

Probab=89.01  E-value=6.9  Score=38.48  Aligned_cols=103  Identities=16%  Similarity=0.145  Sum_probs=60.7

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCe-eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSL-WDAAELT-CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV  129 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~i-wd~~~~~-~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~  129 (432)
                      .+.+.++.+.|++.+++++. .|.+.. +|-. +. .......-...++++.+.|++..++.+ ..|.+.+=+...|...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            35678888999886665544 555443 2222 22 222222334678999999998876665 4566654334555443


Q ss_pred             EEEe-----cCCceEEEEEccCCcEEEEEECCCe
Q psy9319         130 YDIC-----IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       130 ~~~~-----~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ....     ....+.++.|.|++..+++ +.+|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~  281 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGT  281 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEE-cCCCe
Confidence            3322     1234778899998776554 45664

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.75  E-value=18  Score=37.19  Aligned_cols=105  Identities=6%  Similarity=-0.009  Sum_probs=61.7

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--EEEE----e-eCCCCEEEEEEeeCC------CEEEEEe-----
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC--IRTF----Q-RLDWPVRAISFSHDG------ALIASGS-----  113 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~--~~~~----~-~h~~~V~~i~~spdg------~~l~sgs-----  113 (432)
                      -...+.++|.|||++|++--..|.|++++..++..  +..+    . ...+....|+++|+-      .+|+...     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            34567999999998888776579999998655432  2111    1 135678899999874      2444332     


Q ss_pred             -----CCCeEEEEeCCCC--c---EEEEEe-----cCCceEEEEEccCCcEEEEEECC
Q psy9319         114 -----EDLTIDIAHVESG--K---KVYDIC-----IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       114 -----~dg~V~vwd~~~~--~---~~~~~~-----~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                           ....|.-|.+...  .   ....+.     ..+.-..|+|.|||.++++.+..
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1234555554321  1   111121     11224568899999877765544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.75  E-value=14  Score=40.66  Aligned_cols=75  Identities=17%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCC--------EEEEEEe----------------eCCCEEEEEeCCCeE
Q psy9319          63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWP--------VRAISFS----------------HDGALIASGSEDLTI  118 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~--------V~~i~~s----------------pdg~~l~sgs~dg~V  118 (432)
                      .+..++.++.++.|.-.|..+|+.+-.+......        .+.+++-                .++..++.++.|+.|
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            3557777888899999999999887766532210        1122221                134478888899999


Q ss_pred             EEEeCCCCcEEEEEecCCc
Q psy9319         119 DIAHVESGKKVYDICIQAA  137 (432)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~  137 (432)
                      .-.|..+|+.+..+...+.
T Consensus       273 iALDA~TGk~~W~fg~~G~  291 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGT  291 (764)
T ss_pred             EEEECCCCCEEEEecCCCc
Confidence            9999999999887754433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.71  E-value=20  Score=35.13  Aligned_cols=96  Identities=21%  Similarity=0.268  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCEEEEEeCC------CeEEEEeCCCCeeEEEEe---------------eCCCCEEEEEEeeCCCEEEEEeC
Q psy9319          56 ICIEFDPTGKYFAVGSKD------ALVSLWDAAELTCIRTFQ---------------RLDWPVRAISFSHDGALIASGSE  114 (432)
Q Consensus        56 ~~l~~spdg~~L~sgs~d------g~I~iwd~~~~~~~~~~~---------------~h~~~V~~i~~spdg~~l~sgs~  114 (432)
                      -++++.++|.++++.=.+      ..|..++.. |.....+.               .......+++++|+|+.|+++..
T Consensus        88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            378887788888877666      788888876 55543331               12356889999999996665532


Q ss_pred             -----CC--e-------EEE--EeCCC-CcEEEEE--e--------cCCceEEEEEccCCcEEEE
Q psy9319         115 -----DL--T-------IDI--AHVES-GKKVYDI--C--------IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus       115 -----dg--~-------V~v--wd~~~-~~~~~~~--~--------~~~~V~~l~fspdg~~l~s  152 (432)
                           |+  .       +++  +|..+ +.....+  .        ....|..+.+-+++.+|+.
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                 22  1       444  45544 3233332  2        2355888889899887665

>KOG4460|consensus

Probab=88.56  E-value=3.3  Score=42.39  Aligned_cols=27  Identities=19%  Similarity=0.206  Sum_probs=19.5

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLW   79 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iw   79 (432)
                      -.|..+..|+.|+.++-++.+|.+.++
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEE
Confidence            346677778888888888878765544

>KOG1916|consensus

Probab=88.52  E-value=0.33  Score=52.28  Aligned_cols=75  Identities=17%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             ccCCcCEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEE-----------EEeeCCCEEEEEeC
Q psy9319          49 KAHPVTCICIEFDP---TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI-----------SFSHDGALIASGSE  114 (432)
Q Consensus        49 ~~h~~~V~~l~~sp---dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i-----------~~spdg~~l~sgs~  114 (432)
                      .....++.-+.|+|   +..++..+-.+++|++..++.... ..|.+|...+..+           .+||||..+++++.
T Consensus       177 ~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~  255 (1283)
T KOG1916|consen  177 TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS  255 (1283)
T ss_pred             CcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence            33445556677776   556677777788898877764322 3344565544433           36899999999999


Q ss_pred             CCeEEEEeCC
Q psy9319         115 DLTIDIAHVE  124 (432)
Q Consensus       115 dg~V~vwd~~  124 (432)
                      ||.+.+|.+.
T Consensus       256 dG~v~f~Qiy  265 (1283)
T KOG1916|consen  256 DGSVGFYQIY  265 (1283)
T ss_pred             CCccceeeee
Confidence            9999988763

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.15  E-value=19  Score=36.44  Aligned_cols=97  Identities=6%  Similarity=-0.006  Sum_probs=52.3

Q ss_pred             eeEEEEeecCcceeeEEEccCC--cCEEEEEEcC--CCCE-EEEEeCCCeEEEEeC-CCCee----EEEEee--------
Q psy9319          31 QLDFKFKEHHKLEEQNILKAHP--VTCICIEFDP--TGKY-FAVGSKDALVSLWDA-AELTC----IRTFQR--------   92 (432)
Q Consensus        31 ~~~i~~~d~~~~~~~~~l~~h~--~~V~~l~~sp--dg~~-L~sgs~dg~I~iwd~-~~~~~----~~~~~~--------   92 (432)
                      .-.+.+||..+.+.++++.-..  ..+..+.|..  +..+ ++.+.-.++|..|-- ..+..    +..+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            3578899999999999987543  2355777755  3333 333334555555533 33322    222211        


Q ss_pred             --C-------CCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCc
Q psy9319          93 --L-------DWPVRAISFSHDGALIASGS-EDLTIDIAHVESGK  127 (432)
Q Consensus        93 --h-------~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~  127 (432)
                        .       ..-|+.|..|.|.++|+.++ ..|.|+.||+....
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence              0       34589999999999999888 58999999997643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA03098 kelch-like protein; Provisional

Probab=88.04  E-value=6  Score=41.49  Aligned_cols=64  Identities=14%  Similarity=0.231  Sum_probs=33.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCeeEEEEeeCCCCEE-EEEEeeCCCEEEEEeCC------CeEEEEeCCCCc
Q psy9319          63 TGKYFAVGSKD-----ALVSLWDAAELTCIRTFQRLDWPVR-AISFSHDGALIASGSED------LTIDIAHVESGK  127 (432)
Q Consensus        63 dg~~L~sgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~-~i~~spdg~~l~sgs~d------g~V~vwd~~~~~  127 (432)
                      ++.+++.|+.+     ..+..||..+..... ......+.. .....-++.+.+.|+.+      ..+..||+.+++
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWRE-EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceee-CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56677777765     357778877654321 111111111 11122356666666632      457888887654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=88.00  E-value=14  Score=35.72  Aligned_cols=82  Identities=18%  Similarity=0.207  Sum_probs=55.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC----C----------------CeEEEEe
Q psy9319          63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE----D----------------LTIDIAH  122 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~----d----------------g~V~vwd  122 (432)
                      +|++.++-+..|.|.-+|..+|....... -.+..+.++|.  |.++++|-.    +                +-|.+.|
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid  288 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID  288 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence            67888888889999999998776533322 34567788887  777665432    1                2367778


Q ss_pred             CCCCcEEEEEecCCc---eEEEEEccCC
Q psy9319         123 VESGKKVYDICIQAA---TFTVAWHPKQ  147 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~---V~~l~fspdg  147 (432)
                      +.+|..+..+...+.   +++++.-|.-
T Consensus       289 l~tG~vv~~l~feg~v~EifdV~vLPg~  316 (335)
T TIGR03032       289 LNSGDVVHWLRFEGVIEEIYDVAVLPGV  316 (335)
T ss_pred             CCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence            888887777764443   5566666653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.85  E-value=2.8  Score=26.85  Aligned_cols=41  Identities=20%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             eCCCEEEEEe-CCCeEEEEeCCCCcEEEEEecCCceEEEEEc
Q psy9319         104 HDGALIASGS-EDLTIDIAHVESGKKVYDICIQAATFTVAWH  144 (432)
Q Consensus       104 pdg~~l~sgs-~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fs  144 (432)
                      |+++.|++++ .+++|.++|..++..+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            5677666655 5789999999999888887755545556553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.47  E-value=8.6  Score=41.44  Aligned_cols=110  Identities=9%  Similarity=-0.021  Sum_probs=73.1

Q ss_pred             CEEEEEEcC--CCCEEEEEeCCCeEEEEeCCC-------C-------------eeEEEEeeCCCCEEEEEEe--eCCCEE
Q psy9319          54 TCICIEFDP--TGKYFAVGSKDALVSLWDAAE-------L-------------TCIRTFQRLDWPVRAISFS--HDGALI  109 (432)
Q Consensus        54 ~V~~l~~sp--dg~~L~sgs~dg~I~iwd~~~-------~-------------~~~~~~~~h~~~V~~i~~s--pdg~~l  109 (432)
                      .|+.+...-  +...|+.+.+||.|.+|.+.+       .             .+...+. -...+++++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            345554443  446789999999999996531       0             0112222 34578999998  778889


Q ss_pred             EEEeCCCeEEEEeCCCC--cE--EEEEecCCceEEEEEccCC-----c-EEEEEECCCeEEEEeC
Q psy9319         110 ASGSEDLTIDIAHVESG--KK--VYDICIQAATFTVAWHPKQ-----Y-LLAYACDDKYDRKQDC  164 (432)
Q Consensus       110 ~sgs~dg~V~vwd~~~~--~~--~~~~~~~~~V~~l~fspdg-----~-~l~s~s~d~~I~vwd~  164 (432)
                      |.++....|.||-+...  +.  .....+...|.+|+|-++.     . .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98888888888765432  11  1123467779999997743     2 7788889999777664

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.38  E-value=12  Score=36.68  Aligned_cols=101  Identities=12%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee---EEEE----eeCCCCEEEEEEeeC---CCEEEEEeC-C--------
Q psy9319          55 CICIEFDPTGKYFAVGSKDALVSLWDAAELTC---IRTF----QRLDWPVRAISFSHD---GALIASGSE-D--------  115 (432)
Q Consensus        55 V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~---~~~~----~~h~~~V~~i~~spd---g~~l~sgs~-d--------  115 (432)
                      .+.++|.|||.+|++ ...|.|.+++ ..+..   +..+    .........++++|+   ..+|+.... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            578999999988775 5599999999 33433   2222    123457899999994   234443322 1        


Q ss_pred             CeEEEEeCCCC--c-----EEE-EEec----CCceEEEEEccCCcEEEEEECCC
Q psy9319         116 LTIDIAHVESG--K-----KVY-DICI----QAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       116 g~V~vwd~~~~--~-----~~~-~~~~----~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ..|.-|....+  .     .+. .+..    ......|.|.|||.+.++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            23444444333  1     111 1122    23456799999997766665443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.36  E-value=16  Score=30.67  Aligned_cols=104  Identities=12%  Similarity=0.105  Sum_probs=65.4

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCe--------eEEEEeeCCCCEEEEEEee-----CCCEEEEEeCCCeEEEEeC
Q psy9319          57 CIEFDPTGKYFAVGSKDALVSLWDAAELT--------CIRTFQRLDWPVRAISFSH-----DGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        57 ~l~~spdg~~L~sgs~dg~I~iwd~~~~~--------~~~~~~~h~~~V~~i~~sp-----dg~~l~sgs~dg~V~vwd~  123 (432)
                      .-.|......|++++.-|.|.|.+.....        .+..+. -...|++++-.|     +...|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34566666678888888999999876322        233333 455677776544     2346666654 46899999


Q ss_pred             CCCcEEEEEecCCceEEEEEcc----CCcEEEEEECCCeEEEEe
Q psy9319         124 ESGKKVYDICIQAATFTVAWHP----KQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       124 ~~~~~~~~~~~~~~V~~l~fsp----dg~~l~s~s~d~~I~vwd  163 (432)
                      .....+.....+..|.++.+-.    +..++++| .+..|.-||
T Consensus        81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd  123 (136)
T PF14781_consen   81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFD  123 (136)
T ss_pred             ccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeC
Confidence            8887776656677788887743    23444444 455544433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.04  E-value=4.7  Score=42.53  Aligned_cols=72  Identities=17%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCC----CeeEEE--EeeC--------------------CCCEEEEEEee----CCCEEEE
Q psy9319          62 PTGKYFAVGSKDALVSLWDAAE----LTCIRT--FQRL--------------------DWPVRAISFSH----DGALIAS  111 (432)
Q Consensus        62 pdg~~L~sgs~dg~I~iwd~~~----~~~~~~--~~~h--------------------~~~V~~i~~sp----dg~~l~s  111 (432)
                      ++...++.+..||.+.......    +.....  +..+                    .+.+.++++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888899888776553    211111  1111                    13455666666    6789999


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEe
Q psy9319         112 GSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~  133 (432)
                      .+.|+++++||+.++.++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.00  E-value=3.3  Score=36.51  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             CceEEEEEccCC------cEEEEEECCCeEEEEe
Q psy9319         136 AATFTVAWHPKQ------YLLAYACDDKYDRKQD  163 (432)
Q Consensus       136 ~~V~~l~fspdg------~~l~s~s~d~~I~vwd  163 (432)
                      ..|..++|||.|      .+|++.+.++.|.+|.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            378899999955      5788888999944443

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.91  E-value=18  Score=37.93  Aligned_cols=118  Identities=8%  Similarity=-0.013  Sum_probs=65.2

Q ss_pred             CcccccccCCCCc----ceeeeeeecCCCceeEEEEeecCcceeeEEEccCC---cCE--EEEEEcCCCCEEEEEeCCCe
Q psy9319           5 NFIPLLGLNPRPS----LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP---VTC--ICIEFDPTGKYFAVGSKDAL   75 (432)
Q Consensus         5 n~I~~l~~~p~~~----~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~---~~V--~~l~~spdg~~L~sgs~dg~   75 (432)
                      .+|..+.|.|-+.    -+ .+...-..+..|.+..-.....+.+.....+-   -+|  ..+.|+|....|+.-.....
T Consensus        57 EhV~GlsW~P~~~~~~paL-LAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPAL-LAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCce-EEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            5677788887532    22 22233344555665543333344333322211   111  24569998877766554433


Q ss_pred             EEEEeCCCC--eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-CeEEEEeCC
Q psy9319          76 VSLWDAAEL--TCIRTFQRLDWPVRAISFSHDGALIASGSED-LTIDIAHVE  124 (432)
Q Consensus        76 I~iwd~~~~--~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-g~V~vwd~~  124 (432)
                      -.++++...  .....+ ...+.|.|.+|.+||+.|+.+-+. =.-++||-.
T Consensus       136 SV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             eEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            334555422  222233 456789999999999988876544 346688853

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=86.01  E-value=26  Score=34.89  Aligned_cols=100  Identities=12%  Similarity=0.183  Sum_probs=58.1

Q ss_pred             cCEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cee--EEEEeeCCCCEEEEEEeeCCCEEEEEeCCC
Q psy9319          53 VTCICIEFDPTGKYFAVGS-----------KDA-LVSLWDAAE--LTC--IRTFQRLDWPVRAISFSHDGALIASGSEDL  116 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs-----------~dg-~I~iwd~~~--~~~--~~~~~~h~~~V~~i~~spdg~~l~sgs~dg  116 (432)
                      .....++|.++|+++++-.           ..+ .|.+++-..  |..  ...|.......+.+++.++| +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3456889999999877753           223 677775432  332  34444444556889999988 444 44444


Q ss_pred             eEEEEeCCCC-----cE--EE-EEec-----CCceEEEEEccCCcEEEEEE
Q psy9319         117 TIDIAHVESG-----KK--VY-DICI-----QAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       117 ~V~vwd~~~~-----~~--~~-~~~~-----~~~V~~l~fspdg~~l~s~s  154 (432)
                      ..++.|....     +.  +. .+..     ......++|.|||.+.++.+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3334455321     21  11 1211     23467899999998777655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.56  E-value=7.3  Score=39.45  Aligned_cols=45  Identities=18%  Similarity=0.045  Sum_probs=35.9

Q ss_pred             EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319          89 TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus        89 ~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                      .+......+.++..+|++++.++...-|.|.++|+.++..+....
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            344445568899999999988887777999999999888776654

>PHA03098 kelch-like protein; Provisional

Probab=85.49  E-value=11  Score=39.55  Aligned_cols=91  Identities=10%  Similarity=0.098  Sum_probs=43.9

Q ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeEEEEeeCCCCE-EEEEEeeCCCEEEEEeCC--------CeEEEEeCCCCc
Q psy9319          63 TGKYFAVGSKD------ALVSLWDAAELTCIRTFQRLDWPV-RAISFSHDGALIASGSED--------LTIDIAHVESGK  127 (432)
Q Consensus        63 dg~~L~sgs~d------g~I~iwd~~~~~~~~~~~~h~~~V-~~i~~spdg~~l~sgs~d--------g~V~vwd~~~~~  127 (432)
                      ++.+++.|+.+      ..+..||+.+...... .....+. ...+...++..++.|+.+        ..+.+||..+++
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            56666776632      3578899876543221 1111111 111223356666666532        238888887664


Q ss_pred             EEEE--EecCC-ceEEEEEccCCcEEEEEECC
Q psy9319         128 KVYD--ICIQA-ATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       128 ~~~~--~~~~~-~V~~l~fspdg~~l~s~s~d  156 (432)
                      -...  +.... ....+.+  ++.+++.||.+
T Consensus       468 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        468 WTELSSLNFPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             eeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence            3221  11111 1112222  67777777765

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.45  E-value=20  Score=32.67  Aligned_cols=48  Identities=17%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             CEEEEEeCCCeEEEEeCCC--CeeEEEEeeCCCCEEEEEEeeCCCEEEEEe
Q psy9319          65 KYFAVGSKDALVSLWDAAE--LTCIRTFQRLDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        65 ~~L~sgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~i~~spdg~~l~sgs  113 (432)
                      ..|+.+.....|.+|++..  .....+|. .-+.|..+.++..|.||+|--
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEE
Confidence            4454446677899999883  34456665 448899999999999999864

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.88  E-value=19  Score=35.28  Aligned_cols=104  Identities=14%  Similarity=0.082  Sum_probs=67.8

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCe------EEEEeCCC--C--eeE-----EEEeeCCC--------CEEEEEEeeCCCE
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDAL------VSLWDAAE--L--TCI-----RTFQRLDW--------PVRAISFSHDGAL  108 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~------I~iwd~~~--~--~~~-----~~~~~h~~--------~V~~i~~spdg~~  108 (432)
                      -+.++.+.+.|++..+++.|++|.      +..+++..  +  ..+     ..+..-.+        ..-+|++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            366788899876667777788877      66555543  1  111     11111111        3447888778888


Q ss_pred             EEEEeCC------CeEEEEeCCCCcEEEEEe----------------cCCceEEEEEccCCcEEEEEECC
Q psy9319         109 IASGSED------LTIDIAHVESGKKVYDIC----------------IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       109 l~sgs~d------g~V~vwd~~~~~~~~~~~----------------~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      +++.-.+      ..|..++.. |..+..+.                ......+++++|+|..|+++...
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~  167 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES  167 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence            8887777      889999876 55544331                33457899999999977776554

>PHA02713 hypothetical protein; Provisional

Probab=84.75  E-value=14  Score=39.07  Aligned_cols=52  Identities=8%  Similarity=0.176  Sum_probs=26.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCeeEEEEeeCCCCEEEE-EEeeCCCEEEEEeCC
Q psy9319          63 TGKYFAVGSKDA-----LVSLWDAAELTCIRTFQRLDWPVRAI-SFSHDGALIASGSED  115 (432)
Q Consensus        63 dg~~L~sgs~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~i-~~spdg~~l~sgs~d  115 (432)
                      +|.+.+.||.++     ++..||..+..... +.....+.... ...-+|.+.+.|+.+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~~~~g~IYviGG~~  408 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMCVLDQYIYIIGGRT  408 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEEEECCEEEEEeCCC
Confidence            567777777654     47889987654321 11111111111 112367766677654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.69  E-value=28  Score=33.35  Aligned_cols=98  Identities=12%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCeeEEEEee-----CCCCEE
Q psy9319          30 KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS------KDALVSLWDAAELTCIRTFQR-----LDWPVR   98 (432)
Q Consensus        30 ~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs------~dg~I~iwd~~~~~~~~~~~~-----h~~~V~   98 (432)
                      ..-.+.+||..+.+=...-.+-.+.|+++.|..+..++++|.      ....+..||+.+... ..+.+     -.++|.
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence            345566666544433333334567899999987677777764      355788899886543 23332     236788


Q ss_pred             EEEEee-CCC-EEEEEe-C--CCeEEEEeCCCCcE
Q psy9319          99 AISFSH-DGA-LIASGS-E--DLTIDIAHVESGKK  128 (432)
Q Consensus        99 ~i~~sp-dg~-~l~sgs-~--dg~V~vwd~~~~~~  128 (432)
                      .+.+.. |+. +++.|. .  +..|..||-.....
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~  127 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSS  127 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCceEe
Confidence            887754 443 444443 2  34577776544333

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=83.39  E-value=16  Score=38.40  Aligned_cols=76  Identities=9%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEE--EEEccCCcEE
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT--VAWHPKQYLL  150 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~--l~fspdg~~l  150 (432)
                      |.|.=+|+.+|+..-..........+. +.-.+.+++.++.+|.++++|..+|+.+..+...+.+..  +.|.-+|+..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY  518 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY  518 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence            346667777776655444221111111 222455777788899999999999999998875554443  3344456443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=81.37  E-value=8.3  Score=24.56  Aligned_cols=40  Identities=25%  Similarity=0.149  Sum_probs=26.6

Q ss_pred             CCCCEEEEE-eCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEE
Q psy9319          62 PTGKYFAVG-SKDALVSLWDAAELTCIRTFQRLDWPVRAISF  102 (432)
Q Consensus        62 pdg~~L~sg-s~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~  102 (432)
                      |+++.|+++ ..+++|.++|..++..+..+... .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            567766554 45789999999988877777643 33334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.25  E-value=6.3  Score=24.94  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             ccCCcCEEEEEEcCCCCEEEEEeC-C--CeEEEE
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVGSK-D--ALVSLW   79 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sgs~-d--g~I~iw   79 (432)
                      ....+.-.+.+|||||+.|+.++. +  |...||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344556778999999988876654 3  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.09  E-value=32  Score=35.51  Aligned_cols=118  Identities=12%  Similarity=0.054  Sum_probs=69.9

Q ss_pred             EEeecCcceeeEEEccCCcCEEEEEEcCCC--------CEEEEEeCCCeEEEEeCC-CCeeEEEEeeCCCCEEEEEEe--
Q psy9319          35 KFKEHHKLEEQNILKAHPVTCICIEFDPTG--------KYFAVGSKDALVSLWDAA-ELTCIRTFQRLDWPVRAISFS--  103 (432)
Q Consensus        35 ~~~d~~~~~~~~~l~~h~~~V~~l~~spdg--------~~L~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~i~~s--  103 (432)
                      +-.|+.-|+.+-...-|...  -+.|.|+.        ..|+ |-.+..|.--|.+ .|..+.... ....++--.||  
T Consensus       493 ykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~  568 (776)
T COG5167         493 YKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSG  568 (776)
T ss_pred             eeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeee-ehhcccccccccc
Confidence            33455667777777766654  46677742        2333 4345555555554 232222211 11222222222  


Q ss_pred             --eCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECC
Q psy9319         104 --HDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       104 --pdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                        ..+.++|.||..|-|++||--.-.....++ ....|..+..+.+|.++++.|..
T Consensus       569 ~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         569 MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence              244589999999999999965544444444 56678889999999998877754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.89  E-value=95  Score=34.28  Aligned_cols=69  Identities=17%  Similarity=0.129  Sum_probs=47.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCE-------------EEEEEee--CCCEEEEEeC----------CCeE
Q psy9319          64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV-------------RAISFSH--DGALIASGSE----------DLTI  118 (432)
Q Consensus        64 g~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V-------------~~i~~sp--dg~~l~sgs~----------dg~V  118 (432)
                      +..++.++.|+.|.-.|..+|+.+-.|. ..+.|             ..+.-+|  .+..++.|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            4578888899999999999999887663 22221             1122223  2345555542          5889


Q ss_pred             EEEeCCCCcEEEEEe
Q psy9319         119 DIAHVESGKKVYDIC  133 (432)
Q Consensus       119 ~vwd~~~~~~~~~~~  133 (432)
                      +-+|..+|+.+..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=80.88  E-value=45  Score=34.59  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCC---CEEEEEEeeCCCEEEEEeC-------------CCeEEEE
Q psy9319          58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW---PVRAISFSHDGALIASGSE-------------DLTIDIA  121 (432)
Q Consensus        58 l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~---~V~~i~~spdg~~l~sgs~-------------dg~V~vw  121 (432)
                      +..-++|.+++..+  ..+..+|+. |+.+..+.-..+   .-+.+.+-|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            55678888776555  788889986 665555442221   1356778889998887771             1235556


Q ss_pred             eCCCCcEEEEEe---c-------------------------CCceEEEEEcc-CCcEEEEEECCCeEEEEeCCceEEeec
Q psy9319         122 HVESGKKVYDIC---I-------------------------QAATFTVAWHP-KQYLLAYACDDKYDRKQDCGNLKVFGF  172 (432)
Q Consensus       122 d~~~~~~~~~~~---~-------------------------~~~V~~l~fsp-dg~~l~s~s~d~~I~vwd~~~i~vwd~  172 (432)
                      | .+|+.+..+.   |                         ...+.++.+.| ++.+++++-.-..        |...|.
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~--------V~~Id~  300 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSA--------VIKIDY  300 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-E--------EEEEE-
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceE--------EEEEEC
Confidence            6 6666665542   1                         12378899998 4455554443445        444444


Q ss_pred             CCCceeeee
Q psy9319         173 LPEPIKKRK  181 (432)
Q Consensus       173 ~~~~~~~~~  181 (432)
                      .++++.-.+
T Consensus       301 ~t~~i~Wil  309 (477)
T PF05935_consen  301 RTGKIKWIL  309 (477)
T ss_dssp             TTS-EEEEE
T ss_pred             CCCcEEEEe
Confidence            455444433

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.75  E-value=12  Score=35.79  Aligned_cols=69  Identities=9%  Similarity=0.018  Sum_probs=54.4

Q ss_pred             eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          91 QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        91 ~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .+-...+.++.|+|+.+.|++......-.||=...|..+.+++  .-+....+.|..++.++++--.++.+
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l  152 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRAL  152 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceE
Confidence            3444569999999999999988888888888778899999887  33345678888888888877777773

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	432
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-06
2h9l_A	329	Wdr5delta23 Length = 329		1e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-04

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 45  QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH 104
           +  LK H  +   I FD +GK  A  S D  + LWD     CIRT    D  V ++S   
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 202
Query: 105 DGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW----HPKQ--YLLAYACDDKY 158
           +G  I S S D TI +  V++G      C++  T    W     P Q   L+A   +D+ 
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTG-----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257
Query: 159 DR 160
            R
Sbjct: 258 VR 259

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 38  EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWP 96
            H  ++E+N L+AH  +   + F P G+  A  S D  V LW+   +L  ++T       
Sbjct: 2   SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSS 59
Query: 97  VRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACD 155
           V  ++FS DG  IAS S+D T+ + +  +G+ +  +   +++   VA+ P    +A A D
Sbjct: 60  VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 156 DK 157
           DK
Sbjct: 119 DK 120

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 185 LIVSSSYDGLCRIWDTASGQ 204

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 187 LIVSSSYDGLCRIWDTASGQ 206

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 179
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 180 LIVSSSYDGLCRIWDTASGQ 199

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQ 188

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQ 182

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQ 182

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 99  LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 159 LIVSSSYDGLCRIWDTASGQ 178

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQ 188

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 168 LIVSSSYDGLCRIWDTASGQ 187

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 164 LIVSSSYDGLCRIWDTASGQ 183

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQ 188

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           LK H     C  F+P       GS D  V +WD     C++T      PV A+ F+ DG+
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 108 LIASGSEDLTIDIAHVESGK 127
           LI S S D    I    SG+
Sbjct: 162 LIVSSSYDGLCRIWDTASGQ 181

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 53  VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG 112
           +  +C  F P GK+ A G++D L+ +WD      +   Q  +  + ++ +   G  + SG
Sbjct: 126 IRSVC--FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 113 SEDLTIDIAHVESGKKVYDICIQAATFTVAWHP--KQYLLAYACDDKYDRKQDCGNLKVF 170
           S D T+ I  + +G+    + I+    TVA  P   +Y+ A +  D+  R  D       
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL-DRAVRVWDSET---- 238
Query: 171 GFLPEPIKKRKRGGT 185
           GFL E +      GT
Sbjct: 239 GFLVERLDSENESGT 253

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 48  LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
           + A PV    + F P  +Y A G+    V+++         +       + +I++S DG 
Sbjct: 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 108 LIASGSEDLTIDIAHVESGKKVYDI-----CIQAATFTVAWHPKQYLLAYACDDKYDRKQ 162
            +ASG+ D  I+I  + +GK ++ +      I++ TF+    P   LL  A DD Y +  
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS----PDSQLLVTASDDGYIKIY 233
Query: 163 DCGNLKVFGFL 173
           D  +  + G L
Sbjct: 234 DVQHANLAGTL 244

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 46  NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
           ++L  H     C+++D  G+    G+ D +V +WD    TC+ T Q      R  S   D
Sbjct: 233 HVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFD 288
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDI 132
           G  + SGS D +I +  VE+G  ++ +
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTL 315

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 58  IEFDPTGKYFAVGSKDALVSLW--DAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
           + + P G Y A  S DA   +W  +  +  C+ T +  +  V++++++  G L+A+ S D
Sbjct: 67  VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 116 LTIDIAHVESGKKVYDICIQAATFT-----VAWHPKQYLLAYA 153
            ++ +  V+  +  Y+      + T     V WHP Q LLA A
Sbjct: 127 KSVWVWEVDE-EDEYECVSVLNSHTQDVKHVVWHPSQELLASA 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.92
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.92
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.92
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.91
2pm7_B	297	Protein transport protein SEC13, protein transport	99.91
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.9
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.9
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.9
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.9
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.89
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.88
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.88
2pm7_B	297	Protein transport protein SEC13, protein transport	99.88
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.87
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.87
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.87
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.87
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.87
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.87
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.87
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.86
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.86
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.86
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.86
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.86
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.86
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.85
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.85
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.85
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.85
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.85
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.85
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.85
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.85
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.85
3jro_A	753	Fusion protein of protein transport protein SEC13	99.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.84
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.84
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.84
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.84
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.84
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.84
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.84
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.84
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.84
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.84
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.84
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.84
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.84
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.83
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.83
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.83
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.83
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.83
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.83
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.82
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.82
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.82
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.82
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.82
3jro_A	753	Fusion protein of protein transport protein SEC13	99.82
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.81
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.81
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.81
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.81
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.79
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.78
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.77
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.76
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.76
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.74
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.72
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.7
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.69
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.66
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.61
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.54
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.53
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.52
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.5
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.5
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.5
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.5
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.49
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.48
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.48
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.48
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.47
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.46
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.44
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.43
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.43
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.43
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.42
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.41
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.41
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.41
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.4
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.38
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.37
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.32
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.3
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.27
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.26
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.23
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.23
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.23
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.21
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.2
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.17
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.15
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.13
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.13
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.11
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.1
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.08
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.06
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.06
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.05
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.01
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.0
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.99
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.98
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.95
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.95
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.93
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.93
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.93
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.9
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.89
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.85
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.84
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.84
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.84
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.77
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.55
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.4
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.34
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.34
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.31
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.3
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.19
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.16
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.13
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.89
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.75
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.69
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.68
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.6
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.59
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.47
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.47
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.37
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.33
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.31
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.28
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.26
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.22
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.01
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.01
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.81
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.71
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.67
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.66
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.57
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.43
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.34
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.27
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.19
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.17
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.16
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.03
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.89
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.77
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.75
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.71
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.71
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.21
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.01
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.93
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.47
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.43
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.43
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.23
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.09
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.84
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.78
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.47
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.02
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.51
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.47
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.91
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.56
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.46
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.32
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.15
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.95
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.94
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.79
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.7
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.35
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.34
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.74
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.26
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.33
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.23
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.09
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.83
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.51
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.04
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.8
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.53
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.92
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	84.46

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=3.5e-27  Score=226.86  Aligned_cols=206  Identities=14%  Similarity=0.168  Sum_probs=174.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..+ ++++.|+     .+++||..++..+..+.+|..+|.+++|+|++++|++|+.|++|++||+.++
T Consensus        14 ~~V~~~~fsp~~~~l-~s~~~dg-----~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~   87 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWV-LTTLYSG-----RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (304)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTS-----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             CceEEEEECCCCCEE-EEEcCCC-----cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            468999999999877 7777776     4567788899999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE-EEEe-cCCceEEEEEcc-CCcEEEEEECCCeEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV-YDIC-IQAATFTVAWHP-KQYLLAYACDDKYDRK  161 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~-~~~~-~~~~V~~l~fsp-dg~~l~s~s~d~~I~v  161 (432)
                      .++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++..+ ..+. |...|.+++|+| ++..|++|+.|+.|++
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            999999999999999999999999999999999999999988544 4444 888999999999 6799999999999999


Q ss_pred             EeCC-------------------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhccccccccc
Q psy9319         162 QDCG-------------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERH  204 (432)
Q Consensus       162 wd~~-------------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~  204 (432)
                      ||++                                     .|++||+.++.++..+.+|.....           ....
T Consensus       168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~-----------~~~~  236 (304)
T 2ynn_A          168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS-----------FAVF  236 (304)
T ss_dssp             EETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-----------EEEE
T ss_pred             EECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEE-----------EEEE
Confidence            9962                                     267788887777777777643211           1112


Q ss_pred             CccccccccceeccCcceeecccchh
Q psy9319         205 QPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       205 qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      .|.+..   +++++.|..+|+||...
T Consensus       237 ~p~~~~---l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          237 HPTLPI---IISGSEDGTLKIWNSST  259 (304)
T ss_dssp             CSSSSE---EEEEETTSCEEEEETTT
T ss_pred             CCCCCE---EEEEcCCCeEEEEECCC
Confidence            344444   88999999999999765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=4.9e-27  Score=235.73  Aligned_cols=206  Identities=22%  Similarity=0.229  Sum_probs=176.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.++.|+|++..+ ++++.|+++     .+||..++.....+.+|.+.|++++|+|+|.+|++|+.|++|++||+.++
T Consensus       109 ~~V~~~~~~p~~~~l-~s~s~Dg~i-----~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVM-VSASEDATI-----KVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             SCEEEEEECSSSSEE-EEEESSSCE-----EEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             CcEEEEEEcCCCCEE-EEEeCCCeE-----EEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            457899999999876 888888765     56677789999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+. |...|.++.|+|+|.+|++|+.|+.|++||
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            9999999999999999999999999999999999999999999998886 888899999999999999999999999998


Q ss_pred             CC------------------------------------------------------ceEEeecCCCceeeeecCCCchhh
Q psy9319         164 CG------------------------------------------------------NLKVFGFLPEPIKKRKRGGTMSSW  189 (432)
Q Consensus       164 ~~------------------------------------------------------~i~vwd~~~~~~~~~~~g~~mss~  189 (432)
                      +.                                                      .|++||+.++.++..+.+|.... 
T Consensus       263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v-  341 (410)
T 1vyh_C          263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV-  341 (410)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-
T ss_pred             CCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcE-
Confidence            52                                                      26677777777766666654211 


Q ss_pred             hHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         190 VKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       190 ~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                                ......|.+..   +++++.|..+|+||+..
T Consensus       342 ----------~~v~~~~~g~~---l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          342 ----------RGVLFHSGGKF---ILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             ----------EEEEECSSSSC---EEEEETTTEEEEECCTT
T ss_pred             ----------EEEEEcCCCCE---EEEEeCCCeEEEEECCC
Confidence                      11122345555   88999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=2e-25  Score=219.55  Aligned_cols=208  Identities=16%  Similarity=0.120  Sum_probs=166.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEE-------------------------------------EEeecCc------
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDF-------------------------------------KFKEHHK------   41 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i-------------------------------------~~~d~~~------   41 (432)
                      +.|.+++|+|++..+ ++++.|+++..|+.                                     .+|+...      
T Consensus        65 ~~V~~~~~s~d~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~  143 (354)
T 2pbi_B           65 NKVLCMDWCKDKRRI-VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM  143 (354)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred             CeEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc
Confidence            457888899888765 78888887777752                                     2333221      


Q ss_pred             ceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEee--CCCEEEEEeCCCeEE
Q psy9319          42 LEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH--DGALIASGSEDLTID  119 (432)
Q Consensus        42 ~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp--dg~~l~sgs~dg~V~  119 (432)
                      ......+.+|.+.|.+++|+|++..|++|+.|++|++||+.++.++..+.+|...|.+++|+|  +|.+|++|+.||+|+
T Consensus       144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~  223 (354)
T 2pbi_B          144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM  223 (354)
T ss_dssp             GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred             cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence            123456678999999999999999999999999999999999999999999999999999988  578999999999999


Q ss_pred             EEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC---------------------------------
Q psy9319         120 IAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG---------------------------------  165 (432)
Q Consensus       120 vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~---------------------------------  165 (432)
                      +||+++++++..+. |...|.+++|+|++.+|++|+.|++|++||++                                 
T Consensus       224 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence            99999999998886 88999999999999999999999999999963                                 


Q ss_pred             ---ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         166 ---NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       166 ---~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                         .|++||+.++..+..+.+|...           .......|.+..   +++++.|..+|+|+
T Consensus       304 ~d~~i~vwd~~~~~~~~~l~~h~~~-----------v~~l~~spdg~~---l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          304 NDYTINVWDVLKGSRVSILFGHENR-----------VSTLRVSPDGTA---FCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSC-----------EEEEEECTTSSC---EEEEETTSEEEEEC
T ss_pred             CCCcEEEEECCCCceEEEEECCCCc-----------EEEEEECCCCCE---EEEEcCCCCEEecC
Confidence               2556666666555555555321           111223455555   88999999999995

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=1.5e-25  Score=218.93  Aligned_cols=172  Identities=18%  Similarity=0.234  Sum_probs=149.6

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs  113 (432)
                      +.+||..+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||+.++.+...+.+|...|.+++|+|++.+|++|+
T Consensus       166 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s  245 (340)
T 1got_B          166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcEEEEEecC---CceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhh
Q psy9319         114 EDLTIDIAHVESGKKVYDICIQ---AATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWV  190 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~~~~---~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~  190 (432)
                      .|++|++||+.++..+..+.+.   ..|.+++|+|+|.+|++|+.|+.        |++||+.++..+..+.+|......
T Consensus       246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~--------i~vwd~~~~~~~~~~~~h~~~v~~  317 (340)
T 1got_B          246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN--------CNVWDALKADRAGVLAGHDNRVSC  317 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE--------EEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe--------EEEEEcccCcEeeEeecCCCcEEE
Confidence            9999999999999888877644   36999999999999999999999        777777777777778777532211


Q ss_pred             HHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       191 ~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                                 ....|.+..   +++++.|..|++||
T Consensus       318 -----------~~~s~dg~~---l~s~s~D~~i~iWd  340 (340)
T 1got_B          318 -----------LGVTDDGMA---VATGSWDSFLKIWN  340 (340)
T ss_dssp             -----------EEECTTSSC---EEEEETTSCEEEEC
T ss_pred             -----------EEEcCCCCE---EEEEcCCccEEecC
Confidence                       122344444   88999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=2.2e-25  Score=214.03  Aligned_cols=155  Identities=18%  Similarity=0.229  Sum_probs=143.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..+ ++++.|+.+     .+|+..+++....+.+|...|.+++|+|++.+|++|+.|+.|++||+.++
T Consensus        24 ~~v~~~~~s~~~~~l-~s~~~dg~i-----~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           24 KAVSSVKFSPNGEWL-ASSSADKLI-----KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCE-----EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CcEEEEEECCCCCEE-EEeeCCCeE-----EEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            458899999999876 777777754     56677788899999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .++..+.+|...|.+++|+|++.+|++|+.|+.|++||+.++.++..+. |..+|.+++|+|++.+|++++.|+.|++||
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  177 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  177 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            9999999999999999999999999999999999999999999988886 788999999999999999999999999998


Q ss_pred             CC
Q psy9319         164 CG  165 (432)
Q Consensus       164 ~~  165 (432)
                      +.
T Consensus       178 ~~  179 (312)
T 4ery_A          178 TA  179 (312)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=1.2e-25  Score=225.49  Aligned_cols=204  Identities=18%  Similarity=0.245  Sum_probs=171.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..+ ++|+.|+++..|     |..++.++..+.+|...|.+++|+|+|.+|++|+.|++|++||+.++
T Consensus       151 ~~V~~v~~~~~~~~l-~sgs~D~~i~iw-----d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~  224 (410)
T 1vyh_C          151 DSVQDISFDHSGKLL-ASCSADMTIKLW-----DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG  224 (410)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCCCEE-----ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             CcEEEEEEcCCCCEE-EEEeCCCeEEEE-----eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            568899999999866 888999887655     45678889999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccC-----------------
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPK-----------------  146 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspd-----------------  146 (432)
                      .++..+.+|...|.++.|+|++.+|++|+.|++|++||+.++.+...+. |...|.+++|+|+                 
T Consensus       225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  304 (410)
T 1vyh_C          225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS  304 (410)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred             cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccccc
Confidence            9999999999999999999999999999999999999999999988885 8889999999996                 


Q ss_pred             ---CcEEEEEECCCeEEEEeCC----------------------------------ceEEeecCCCceeeeecCCCchhh
Q psy9319         147 ---QYLLAYACDDKYDRKQDCG----------------------------------NLKVFGFLPEPIKKRKRGGTMSSW  189 (432)
Q Consensus       147 ---g~~l~s~s~d~~I~vwd~~----------------------------------~i~vwd~~~~~~~~~~~g~~mss~  189 (432)
                         |.+|++|+.|+.|++||+.                                  .|++||+.++.++..+.+|.....
T Consensus       305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~  384 (410)
T 1vyh_C          305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT  384 (410)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence               6789999999999999974                                  266677766666666655542111


Q ss_pred             hHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         190 VKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       190 ~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      .           ....|.+..   +++++.|..||+|+.
T Consensus       385 ~-----------l~~~~~~~~---l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          385 S-----------LDFHKTAPY---VVTGSVDQTVKVWEC  409 (410)
T ss_dssp             E-----------EEECSSSSC---EEEEETTSEEEEEC-
T ss_pred             E-----------EEEcCCCCE---EEEEeCCCcEEEEeC
Confidence            1           112233333   789999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=218.12  Aligned_cols=196  Identities=17%  Similarity=0.243  Sum_probs=169.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..+.+++|+|++..+ ++++.|+     .+.+|+..++.....+..|...|.+++|+|+|++|++|+.|+.|++||+.++
T Consensus       123 ~~~~~~~~spdg~~l-~~g~~dg-----~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~  196 (321)
T 3ow8_A          123 VDAWTLAFSPDSQYL-ATGTHVG-----KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG  196 (321)
T ss_dssp             TCCCCEEECTTSSEE-EEECTTS-----EEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccEEEEEECCCCCEE-EEEcCCC-----cEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            456789999999877 6666655     4677788889999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .++..+.+|..+|.+++|+|++.+|++|+.|++|++||+.++..+..+. |...|.+++|+|++.+|++++.|+.     
T Consensus       197 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-----  271 (321)
T 3ow8_A          197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-----  271 (321)
T ss_dssp             EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-----
T ss_pred             cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-----
Confidence            9999999999999999999999999999999999999999999888876 8889999999999999999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                         |++||+.++.++..+.+|....+.           ....|.+..   ++.+..|..+++||+
T Consensus       272 ---v~iwd~~~~~~~~~~~~h~~~v~~-----------v~~s~~g~~---l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          272 ---VKVWDVGTRTCVHTFFDHQDQVWG-----------VKYNGNGSK---IVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ---EEEEETTTTEEEEEECCCSSCEEE-----------EEECTTSSE---EEEEETTCCEEEEEC
T ss_pred             ---EEEEeCCCCEEEEEEcCCCCcEEE-----------EEECCCCCE---EEEEeCCCeEEEEeC
Confidence               777777888888888777532211           222344444   889999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=5.9e-25  Score=212.85  Aligned_cols=204  Identities=17%  Similarity=0.147  Sum_probs=168.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++..++++++.|+++..|++.-.+...+.++..+.+|...|.+++|+|+|.+|++|+.|++|++||+.++
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~   97 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG   97 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            45789999998866679999999998888865443345678899999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-ecCCceEEEEEccC------CcEEEEEECCC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPK------QYLLAYACDDK  157 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~~~~~V~~l~fspd------g~~l~s~s~d~  157 (432)
                      .++..+.+|...|.+++|+|++.+|++|+.|++|++||+.. .++..+ .|...|.++.|+|.      +..+++++.|+
T Consensus        98 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~  176 (319)
T 3frx_A           98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK  176 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTS
T ss_pred             CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCC
Confidence            99999999999999999999999999999999999999964 455555 48889999999985      45899999999


Q ss_pred             eEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      .        |++||+.++.....+.+|......           ....|.+..   ++.+..|..+|+||....
T Consensus       177 ~--------i~~wd~~~~~~~~~~~~h~~~v~~-----------~~~sp~g~~---l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          177 M--------VKAWNLNQFQIEADFIGHNSNINT-----------LTASPDGTL---IASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             C--------EEEEETTTTEEEEEECCCCSCEEE-----------EEECTTSSE---EEEEETTCEEEEEETTTT
T ss_pred             E--------EEEEECCcchhheeecCCCCcEEE-----------EEEcCCCCE---EEEEeCCCeEEEEECCCC
Confidence            9        666666666666666666432111           122355555   889999999999998754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=1.6e-24  Score=215.95  Aligned_cols=210  Identities=18%  Similarity=0.217  Sum_probs=169.8

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|.+++|+|++..+ ++++.|+.+     ++||..+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.
T Consensus       125 ~v~~v~~s~dg~~l-~s~~~d~~i-----~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          125 YIRSVCFSPDGKFL-ATGAEDRLI-----RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             BEEEEEECTTSSEE-EEEETTSCE-----EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEECCCCCEE-EEEcCCCeE-----EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            47899999999877 777777754     666777899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEE--------ecCCceEEEEEccCCcEEEEEECC
Q psy9319          86 CIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDI--------CIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~--------~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      +...+. +...+.+++|+| ++.+|++|+.|+.|++||+.++..+..+        .|...|.+++|+|+|.+|++|+.|
T Consensus       199 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          199 CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            887776 667899999999 8999999999999999999999887766        377889999999999999999999


Q ss_pred             CeEEEEeCC----------------------------------------------ceEEeecCCCceeeeecCCCchhhh
Q psy9319         157 KYDRKQDCG----------------------------------------------NLKVFGFLPEPIKKRKRGGTMSSWV  190 (432)
Q Consensus       157 ~~I~vwd~~----------------------------------------------~i~vwd~~~~~~~~~~~g~~mss~~  190 (432)
                      +.|++||+.                                              .|++||+.++..+..+.+|......
T Consensus       278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~  357 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS  357 (393)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEE
Confidence            999999863                                              2566777777766666666532221


Q ss_pred             HHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       191 ~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      .+...     .....|.+..   +++++.|..+|+|++..
T Consensus       358 v~~~~-----~~~~~p~~~~---l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          358 VAVAN-----GSSLGPEYNV---FATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEECS-----SCTTCTTCEE---EEEEETTSEEEEEEEEE
T ss_pred             EEecC-----CcCcCCCCCE---EEEECCCCcEEECcccc
Confidence            11100     0001122333   78999999999999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=9.3e-25  Score=230.32  Aligned_cols=210  Identities=16%  Similarity=0.185  Sum_probs=161.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEE-------------------------------------------EEeecCc
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDF-------------------------------------------KFKEHHK   41 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i-------------------------------------------~~~d~~~   41 (432)
                      ..|.+++|+|++.++ ++++.|+++++|++                                           .+||  .
T Consensus        60 ~~v~~~~~spdg~~l-asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~  136 (611)
T 1nr0_A           60 HQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--T  136 (611)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--T
T ss_pred             CceEEEEECCCCcEE-EEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--C
Confidence            346778888887765 77777777766653                                           1122  2


Q ss_pred             ceeeEEEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEE
Q psy9319          42 LEEQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI  120 (432)
Q Consensus        42 ~~~~~~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~v  120 (432)
                      +.....+.+|...|++++|+|++. .|++|+.|++|++||..++.+...+.+|...|++++|+|+|.+|++|+.|++|++
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            334445678899999999999886 5999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcEEEEE--------ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc--------------------------
Q psy9319         121 AHVESGKKVYDI--------CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN--------------------------  166 (432)
Q Consensus       121 wd~~~~~~~~~~--------~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~--------------------------  166 (432)
                      ||+.+++++..+        .|.+.|.+++|+|+|.+|++++.|++|++||+..                          
T Consensus       217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            999999998877        4788999999999999999999999988887642                          


Q ss_pred             ---------eEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         167 ---------LKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       167 ---------i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                               +++|+..++.+...+.+|...           .......|.+..   +++++.|..+|+||....
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~-----------v~~l~~spdg~~---l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKA-----------ITALSSSADGKT---LFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSC-----------EEEEEECTTSSE---EEEEETTSCEEEEETTTC
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCC-----------EEEEEEeCCCCE---EEEEeCCCcEEEEECCCC
Confidence                     233444444444444444311           111122355555   788999999999998653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=214.18  Aligned_cols=198  Identities=14%  Similarity=0.087  Sum_probs=157.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE----EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN----ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~----~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      .|.+++|+|++. + ++++.|+++     ++||..+++.+.    .+.+|.+.|++++|+|+|++|++|+.|++|++||+
T Consensus        84 ~v~~~~~s~d~~-l-~~~s~dg~v-----~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           84 GVADLTWVGERG-I-LVASDSGAV-----ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             CEEEEEEETTTE-E-EEEETTSEE-----EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CEEEEEEeCCCe-E-EEEECCCEE-----EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            478899999864 3 577777765     555555665543    34589999999999999999999999999999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccC-CcEEEEEECC
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPK-QYLLAYACDD  156 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspd-g~~l~s~s~d  156 (432)
                      .++.++..+.+|...|++++|+|++ .+|++|+.|++|++||++++++...+.   +...+.+++|+|+ +.+|++|+.|
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            9999999999999999999999987 478999999999999999999888774   4556899999995 5789999999


Q ss_pred             CeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         157 KYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      +.        |++||+.++.++..+.+|......           ....|.+..  -+.+++.|.+||+||....
T Consensus       237 g~--------v~~wd~~~~~~~~~~~~h~~~v~~-----------v~fsp~g~~--~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          237 GT--------VSLVDTKSTSCVLSSAVHSQCVTG-----------LVFSPHSVP--FLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             SE--------EEEEESCC--CCEEEECCSSCEEE-----------EEECSSSSC--CEEEEETTSCEEEECTTCC
T ss_pred             Cc--------EEEEECCCCcEEEEEcCCCCCEEE-----------EEEccCCCe--EEEEEeCCCeEEEEECCCC
Confidence            99        777777788888888887532211           112343321  1568899999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=7.9e-24  Score=203.19  Aligned_cols=155  Identities=25%  Similarity=0.299  Sum_probs=141.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++..+ ++++.|+     .+.+||..+++++..+.+|...|.+++|+|++.+|++|+.|+.|++||+.++
T Consensus        66 ~~v~~~~~~~~~~~l-~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  139 (312)
T 4ery_A           66 LGISDVAWSSDSNLL-VSASDDK-----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG  139 (312)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTS-----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CceEEEEEcCCCCEE-EEECCCC-----EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            457889999999876 7777665     5677788899999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      .++..+..|..+|.+++|+|++.+|++|+.|+.|++||+.+++++..+.  +...+..++|+|++.+|++++.|+.|++|
T Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  219 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence            9999999999999999999999999999999999999999999888764  56679999999999999999999998888


Q ss_pred             eCC
Q psy9319         163 DCG  165 (432)
Q Consensus       163 d~~  165 (432)
                      |+.
T Consensus       220 d~~  222 (312)
T 4ery_A          220 DYS  222 (312)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.93  E-value=2.6e-24  Score=211.25  Aligned_cols=198  Identities=15%  Similarity=0.150  Sum_probs=157.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|.+++|+|++..+ ++++.|+++     ++||..+++++..+.+|.+.|++++|+|++ .+|++|+.|++|++||+.+
T Consensus       128 ~~V~~v~~spdg~~l-~sgs~d~~i-----~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          128 DIVSTVSVLSSGTQA-VSGSKDICI-----KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCE-----EEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred             CCEEEEEECCCCCEE-EEEeCCCeE-----EEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence            568999999999877 888888765     667778999999999999999999999987 5789999999999999999


Q ss_pred             CeeEEEEe--eCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCC-cEEEEEECCCe
Q psy9319          84 LTCIRTFQ--RLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQ-YLLAYACDDKY  158 (432)
Q Consensus        84 ~~~~~~~~--~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg-~~l~s~s~d~~  158 (432)
                      +.+...+.  .|...+.+++|+| ++.+|++|+.||+|++||+++++++..+. |...|.+++|+|+| .+|++|+.|++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~  281 (344)
T 4gqb_B          202 PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS  281 (344)
T ss_dssp             SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe
Confidence            98887764  4556799999999 56789999999999999999999988887 88999999999998 68999999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                              |++||+.+++++ .+.+|.....           .....|.+..  -+.+++.|.+|++|+...
T Consensus       282 --------i~vwd~~~~~~~-~~~~H~~~V~-----------~v~~sp~~~~--llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          282 --------LAVLDSSLSELF-RSQAHRDFVR-----------DATWSPLNHS--LLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             --------EEEECTTCCEEE-EECCCSSCEE-----------EEEECSSSTT--EEEEEETTSCEEEEECCC
T ss_pred             --------EEEEECCCCcEE-EEcCCCCCEE-----------EEEEeCCCCe--EEEEEcCCCeEEEEECCC
Confidence                    666666666544 3456643211           1122344433  134788999999998865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=6.6e-24  Score=205.49  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=138.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.++.|+|++..+ ++++.|++     +++||..+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+. +
T Consensus        66 ~~v~~~~~s~dg~~l-~s~s~D~~-----v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~  138 (319)
T 3frx_A           66 HIVQDCTLTADGAYA-LSASWDKT-----LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G  138 (319)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSE-----EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-S
T ss_pred             ccEEEEEECCCCCEE-EEEeCCCE-----EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-C
Confidence            457889999999876 78887765     5677778999999999999999999999999999999999999999997 5


Q ss_pred             eeEEEEeeCCCCEEEEEEeeC------CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHD------GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spd------g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      .++..+.+|...|.++.|+|.      +..|++++.|+.|++||+.++.....+. |...|.+++|+|+|.+|++|+.|+
T Consensus       139 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg  218 (319)
T 3frx_A          139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG  218 (319)
T ss_dssp             CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred             CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            678888999999999999984      4589999999999999999998887775 889999999999999999999999


Q ss_pred             eEEEEeCCc
Q psy9319         158 YDRKQDCGN  166 (432)
Q Consensus       158 ~I~vwd~~~  166 (432)
                      .|++||+..
T Consensus       219 ~i~iwd~~~  227 (319)
T 3frx_A          219 EIMLWNLAA  227 (319)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCC
Confidence            988888743

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=3.6e-24  Score=209.61  Aligned_cols=156  Identities=19%  Similarity=0.275  Sum_probs=135.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++..+ ++++.|+++.+|++.   .....++..+.+|...|.+++|+|+|.+|++|+.|++|++||+.++
T Consensus        62 ~~v~~~~~sp~g~~l-~s~s~D~~v~iw~~~---~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYL-ASASFDATTCIWKKN---QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCEEEEEEC---CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             CcEEEEEECCCCCEE-EEEECCCcEEEEEcc---CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            457899999999876 888999887766653   1223567889999999999999999999999999999999999865


Q ss_pred             ---eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE--EEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          85 ---TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK--VYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        85 ---~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~--~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                         .++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++..  ...+. |...|.+++|+|+|.+|++|+.|++
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence               34667889999999999999999999999999999999988753  34444 8889999999999999999999999


Q ss_pred             EEEEeC
Q psy9319         159 DRKQDC  164 (432)
Q Consensus       159 I~vwd~  164 (432)
                      |++||.
T Consensus       218 v~iW~~  223 (345)
T 3fm0_A          218 VRIWRQ  223 (345)
T ss_dssp             EEEEEE
T ss_pred             EEEecc
Confidence            999984

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.9e-24  Score=209.82  Aligned_cols=198  Identities=18%  Similarity=0.262  Sum_probs=170.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++++|++..+ ++++.|++     +++||..+++++..+.+|...+.+++|+|+|.+|++|+.|+.|++||+.++
T Consensus        81 ~~v~~~~~~~~~~~l-~s~s~D~~-----i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~  154 (321)
T 3ow8_A           81 LGVVSVDISHTLPIA-ASSSLDAH-----IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG  154 (321)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTSE-----EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEECCCCCEE-EEEeCCCc-----EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence            347888999998766 77777764     567778899999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .....+..|...|.+++|+|+|.+|++|+.|+.|++||+.+++++..+. |..+|.+++|+|++.+|++|+.|+.     
T Consensus       155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-----  229 (321)
T 3ow8_A          155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-----  229 (321)
T ss_dssp             SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-----
T ss_pred             ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-----
Confidence            9999999999999999999999999999999999999999999988886 8889999999999999999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                         |++||+.++..+..+.+|......           ....|.+..   ++.++.|..+++||...
T Consensus       230 ---i~iwd~~~~~~~~~~~~h~~~v~~-----------~~~sp~~~~---l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          230 ---IKIYDVQHANLAGTLSGHASWVLN-----------VAFCPDDTH---FVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             ---EEEEETTTCCEEEEECCCSSCEEE-----------EEECTTSSE---EEEEETTSCEEEEETTT
T ss_pred             ---EEEEECCCcceeEEEcCCCCceEE-----------EEECCCCCE---EEEEeCCCcEEEEeCCC
Confidence               677777777777777777532211           122345544   88999999999999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.4e-24  Score=208.52  Aligned_cols=160  Identities=20%  Similarity=0.246  Sum_probs=132.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEe--ecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFK--EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~--d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      ..|.+++|+|++.++ ++++.|+++.+|++.-.  ......++..+.+|...|.+++|+|+|.+|++|+.|++|++||+.
T Consensus        59 ~~v~~v~~sp~~~~l-as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           59 KAIRSVAWRPHTSLL-AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCCCEE-EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            458899999999866 88899998877776421  112346678899999999999999999999999999999999994


Q ss_pred             C----CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC--cEEEEEe-cCCceEEEEEccC--CcEEEEE
Q psy9319          83 E----LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG--KKVYDIC-IQAATFTVAWHPK--QYLLAYA  153 (432)
Q Consensus        83 ~----~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~--~~~~~~~-~~~~V~~l~fspd--g~~l~s~  153 (432)
                      .    ..++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++  .++..+. |...|.+++|+|+  +.+|++|
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  217 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG  217 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence            2    3567788899999999999999999999999999999998876  5666665 8899999999998  7799999


Q ss_pred             ECCCeEEEEeCC
Q psy9319         154 CDDKYDRKQDCG  165 (432)
Q Consensus       154 s~d~~I~vwd~~  165 (432)
                      +.|++|++||+.
T Consensus       218 s~D~~v~iw~~~  229 (330)
T 2hes_X          218 SDDSTVRVWKYM  229 (330)
T ss_dssp             ETTSCEEEEEEE
T ss_pred             eCCCeEEEEEec
Confidence            999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.92  E-value=5.1e-24  Score=208.55  Aligned_cols=196  Identities=23%  Similarity=0.313  Sum_probs=156.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eE-EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QN-ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~-~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      .|.+++|+|++.++ ++++.|+++++|++.     ++..  .. ...+|...|.+++|+|+|.+|++|+.|++|++||+.
T Consensus        18 ~v~~l~~sp~g~~l-as~~~D~~i~iw~~~-----~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~   91 (345)
T 3fm0_A           18 RCWFLAWNPAGTLL-ASCGGDRRIRIWGTE-----GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN   91 (345)
T ss_dssp             CEEEEEECTTSSCE-EEEETTSCEEEEEEE-----TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             cEEEEEECCCCCEE-EEEcCCCeEEEEEcC-----CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence            57889999999877 888999888777654     4432  22 336899999999999999999999999999999988


Q ss_pred             CC--eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE---EEEEe-cCCceEEEEEccCCcEEEEEECC
Q psy9319          83 EL--TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK---VYDIC-IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        83 ~~--~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~---~~~~~-~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      .+  .++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++..   +..+. |...|.+++|+|++.+|++++.|
T Consensus        92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A           92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred             CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence            66  45788899999999999999999999999999999999987643   34443 78889999999999999999999


Q ss_pred             CeEEEEeCCceEEeecCCCc--eeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         157 KYDRKQDCGNLKVFGFLPEP--IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~--~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      +.        |++|++.++.  +...+.+|.....           .....|.+..   ++.++.|.++|+|+..
T Consensus       172 ~~--------i~~w~~~~~~~~~~~~~~~h~~~v~-----------~l~~sp~g~~---l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          172 DT--------VKLYREEEDDWVCCATLEGHESTVW-----------SLAFDPSGQR---LASCSDDRTVRIWRQY  224 (345)
T ss_dssp             SC--------EEEEEEETTEEEEEEEECCCSSCEE-----------EEEECTTSSE---EEEEETTSCEEEEEEE
T ss_pred             Cc--------EEEEEecCCCEEEEEEecCCCCceE-----------EEEECCCCCE---EEEEeCCCeEEEeccc
Confidence            99        5555555543  3345566643211           1222355555   8899999999999853

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.92  E-value=1.6e-23  Score=204.51  Aligned_cols=197  Identities=14%  Similarity=0.167  Sum_probs=166.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.++.|+|++.++ ++++.|++     +++||..++..+..+..|...|.+++|+|+|.+|++|+.|+.|++||+.++
T Consensus        56 ~~v~~~~~s~d~~~l-~s~s~Dg~-----v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~  129 (340)
T 1got_B           56 AKIYAMHWGTDSRLL-LSASQDGK-----LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTTE-----EEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred             CceEEEEECCCCCEE-EEEeCCCc-----EEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence            567899999999876 78888865     567777889999999999999999999999999999999999999999865


Q ss_pred             ----eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          85 ----TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        85 ----~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                          .....+.+|.+.|.++.|+|++. +++++.|++|++||+.++.++..+. |...|.+++|+|++.++++|+.|+. 
T Consensus       130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~-  207 (340)
T 1got_B          130 EGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-  207 (340)
T ss_dssp             SBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred             CCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc-
Confidence                35667889999999999999875 8899999999999999999988886 8889999999999999999999999 


Q ss_pred             EEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         160 RKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                             |++||+.++.++..+.+|......           ....|.+..   ++.++.|..+|+||...
T Consensus       208 -------v~~wd~~~~~~~~~~~~h~~~v~~-----------v~~~p~~~~---l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          208 -------AKLWDVREGMCRQTFTGHESDINA-----------ICFFPNGNA---FATGSDDATCRLFDLRA  257 (340)
T ss_dssp             -------EEEEETTTCSEEEEECCCSSCEEE-----------EEECTTSSE---EEEEETTSCEEEEETTT
T ss_pred             -------EEEEECCCCeeEEEEcCCcCCEEE-----------EEEcCCCCE---EEEEcCCCcEEEEECCC
Confidence                   777777777887777776532111           122344444   78999999999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.92  E-value=2.1e-23  Score=201.22  Aligned_cols=222  Identities=18%  Similarity=0.130  Sum_probs=162.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..++++|+.|+++.+|++.-.....+.+...+.+|...|.+++|+|+|.+|++|+.|+.|++|+....
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~  118 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG  118 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence            56899999999766669999999998888765444455678889999999999999999999999999999999987643


Q ss_pred             eeEEE-------------------------------------------EeeCCCCEEEEEEeeCC--CEEEEEeCCCeEE
Q psy9319          85 TCIRT-------------------------------------------FQRLDWPVRAISFSHDG--ALIASGSEDLTID  119 (432)
Q Consensus        85 ~~~~~-------------------------------------------~~~h~~~V~~i~~spdg--~~l~sgs~dg~V~  119 (432)
                      .....                                           +.+|...+.+++|++++  .++++++.|+.|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~  198 (340)
T 4aow_A          119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK  198 (340)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred             ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence            32211                                           12456678888888754  5778888999999


Q ss_pred             EEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCc--------------------------------
Q psy9319         120 IAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN--------------------------------  166 (432)
Q Consensus       120 vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~--------------------------------  166 (432)
                      +||+.++.++..+. |...|.+++|+|++.+|++|+.|+.|++||+..                                
T Consensus       199 i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~  278 (340)
T 4aow_A          199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS  278 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTE
T ss_pred             EEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCE
Confidence            99999998888776 888999999999999999999999999998642                                


Q ss_pred             eEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         167 LKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       167 i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      |++||+.++..+..+...........  ...........|.+..   ++.++.|..||+||...+
T Consensus       279 i~iwd~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~dg~~---l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          279 IKIWDLEGKIIVDELKQEVISTSSKA--EPPQCTSLAWSADGQT---LFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEEEETTTTEEEEEECCC-------C--CCCCEEEEEECTTSSE---EEEEETTSCEEEEEEEC-
T ss_pred             EEEEECCCCeEEEeccccceeeeccC--CCCCEEEEEECCCCCE---EEEEeCCCEEEEEeCCCc
Confidence            45555555554444433221110000  0001111222345544   789999999999997654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.92  E-value=2.5e-23  Score=203.18  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=131.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++.++ ++++.|++     +++||..+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+.. 
T Consensus        77 ~~V~~~~~~~~~~~l-~s~s~D~~-----v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-  149 (343)
T 2xzm_R           77 HFVSDLALSQENCFA-ISSSWDKT-----LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-  149 (343)
T ss_dssp             SCEEEEEECSSTTEE-EEEETTSE-----EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-
T ss_pred             CceEEEEECCCCCEE-EEEcCCCc-----EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-
Confidence            357889999998876 78887765     56777788999999999999999999999999999999999999999984 


Q ss_pred             eeEEEEe---eCCCCEEEEEEeeCC----------CEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEE
Q psy9319          85 TCIRTFQ---RLDWPVRAISFSHDG----------ALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLL  150 (432)
Q Consensus        85 ~~~~~~~---~h~~~V~~i~~spdg----------~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l  150 (432)
                      .....+.   +|...|.+++|+|++          .+|++++.|+.|++||. .+.....+. |...|.+++|+|+|.+|
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l  228 (343)
T 2xzm_R          150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYI  228 (343)
T ss_dssp             CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEE
Confidence            3433433   688899999999987          79999999999999994 455555554 88999999999999999


Q ss_pred             EEEECCCeEEEEeC
Q psy9319         151 AYACDDKYDRKQDC  164 (432)
Q Consensus       151 ~s~s~d~~I~vwd~  164 (432)
                      ++|+.|+.|++||+
T Consensus       229 ~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          229 ATGGKDKKLLIWDI  242 (343)
T ss_dssp             EEEETTCEEEEEES
T ss_pred             EEEcCCCeEEEEEC
Confidence            99999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=3.7e-23  Score=206.09  Aligned_cols=199  Identities=16%  Similarity=0.227  Sum_probs=158.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCc------------------CEEEEEEcCCCCE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPV------------------TCICIEFDPTGKY   66 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~------------------~V~~l~~spdg~~   66 (432)
                      ..|.+++|+|++..+ ++++ |.     .+.+|+..++..+..+.+|..                  .|.+++|+|+|.+
T Consensus        65 ~~V~~v~fspdg~~l-a~g~-~~-----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           65 SVVCCVKFSNDGEYL-ATGC-NK-----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             SCCCEEEECTTSSEE-EEEC-BS-----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CEEEEEEECCCCCEE-EEEc-CC-----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            467899999999977 5544 33     457788888888888776542                  4999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEcc-
Q psy9319          67 FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP-  145 (432)
Q Consensus        67 L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fsp-  145 (432)
                      |++|+.|+.|+|||+.++..+..+.+|...|.+++|+|++.+|++|+.|++|++||+.++++...+.+...+.+++|+| 
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999998888888999999999 


Q ss_pred             CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec-------CCCchhhhHHhhhcccccccccCccccccccceecc
Q psy9319         146 KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR-------GGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKK  218 (432)
Q Consensus       146 dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~-------g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~  218 (432)
                      ++.+|++|+.|+.        |++||+.++..+..+.       +|..           ........|.+..   ++.+.
T Consensus       218 ~~~~l~~~s~d~~--------v~iwd~~~~~~~~~~~~~~~~~~~h~~-----------~v~~v~~~~~g~~---l~s~s  275 (393)
T 1erj_A          218 DGKYIAAGSLDRA--------VRVWDSETGFLVERLDSENESGTGHKD-----------SVYSVVFTRDGQS---VVSGS  275 (393)
T ss_dssp             TCCEEEEEETTSC--------EEEEETTTCCEEEEEC------CCCSS-----------CEEEEEECTTSSE---EEEEE
T ss_pred             CCCEEEEEcCCCc--------EEEEECCCCcEEEeecccccCCCCCCC-----------CEEEEEECCCCCE---EEEEe
Confidence            8999999999999        5556666665555442       2221           1111222344444   78999


Q ss_pred             CcceeecccchhHH
Q psy9319         219 KDYRVRADHFNKKK  232 (432)
Q Consensus       219 ~D~~lR~~d~~~k~  232 (432)
                      .|..+++||.....
T Consensus       276 ~d~~v~~wd~~~~~  289 (393)
T 1erj_A          276 LDRSVKLWNLQNAN  289 (393)
T ss_dssp             TTSEEEEEEC----
T ss_pred             CCCEEEEEECCCCC
Confidence            99999999987643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.5e-23  Score=200.52  Aligned_cols=198  Identities=19%  Similarity=0.260  Sum_probs=148.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc--eeeEEE-cc-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL--EEQNIL-KA-HPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~--~~~~~l-~~-h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ..|.+++|+|+   ++++++.|+++..|++     .++  .....+ .+ |...|.+++|+|++.+|++|+.|++|+|||
T Consensus        15 ~~v~~~~~s~~---~las~~~D~~i~lw~~-----~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~   86 (330)
T 2hes_X           15 EKIWSFDFSQG---ILATGSTDRKIKLVSV-----KYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA   86 (330)
T ss_dssp             SCEEEEEEETT---EEEEEESSSCEEEEEC-----SSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CceeeeccCCC---EEEEEcCCCEEEEEEe-----cCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            45788899887   5588899987766654     332  455566 45 999999999999999999999999999999


Q ss_pred             CC-------CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC----cEEEEEe-cCCceEEEEEccCCc
Q psy9319          81 AA-------ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG----KKVYDIC-IQAATFTVAWHPKQY  148 (432)
Q Consensus        81 ~~-------~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~----~~~~~~~-~~~~V~~l~fspdg~  148 (432)
                      +.       ...++..+.+|...|.+++|+|+|.+|++|+.|++|++||+...    .++..+. |...|.+++|+|++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~  166 (330)
T 2hes_X           87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA  166 (330)
T ss_dssp             C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred             cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence            85       24567788899999999999999999999999999999999532    4555554 888999999999999


Q ss_pred             EEEEEECCCeEEEEeCCceEEeecCCC--ceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecc
Q psy9319         149 LLAYACDDKYDRKQDCGNLKVFGFLPE--PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRAD  226 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~i~vwd~~~~--~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~  226 (432)
                      +|++|+.|++        |++|+..++  .++..+.+|....+..           ...|... ..-+++++.|.++|+|
T Consensus       167 ~l~s~s~D~~--------i~iW~~~~~~~~~~~~~~~h~~~v~~~-----------~~~~~~~-~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          167 LLASSSYDDT--------VRIWKDYDDDWECVAVLNGHEGTVWSS-----------DFDKTEG-VFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             EEEEEETTSC--------EEEEEEETTEEEEEEEECCCSSCEEEE-----------EECCSSS-SCEEEEEETTSCEEEE
T ss_pred             EEEEEcCCCe--------EEEEECCCCCeeEEEEccCCCCcEEEE-----------EecCCCC-eeEEEEEeCCCeEEEE
Confidence            9999999999        555555444  4566677765322111           1122210 1126789999999999


Q ss_pred             cchh
Q psy9319         227 HFNK  230 (432)
Q Consensus       227 d~~~  230 (432)
                      |+..
T Consensus       227 ~~~~  230 (330)
T 2hes_X          227 KYMG  230 (330)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            9865

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.91  E-value=3.4e-23  Score=198.26  Aligned_cols=203  Identities=12%  Similarity=0.135  Sum_probs=156.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd~~   82 (432)
                      ..|.+++|+|++..+ ++++.|+++++|++.   ..+.+++.++.+|.++|++++|+|  +|.+|++|+.|++|+|||+.
T Consensus        10 ~~V~~~~~s~~g~~l-as~s~D~~v~iw~~~---~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRM-ATCSSDKTIKIFEVE---GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCEEEEEBC---SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             CceEEEEECCCCCEE-EEEeCCCEEEEEecC---CCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            468899999999876 888889887666542   123467889999999999999986  48999999999999999998


Q ss_pred             CCe--eEEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcE--EEEE-ecCCceEEEEEccC---------
Q psy9319          83 ELT--CIRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKK--VYDI-CIQAATFTVAWHPK---------  146 (432)
Q Consensus        83 ~~~--~~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~--~~~~-~~~~~V~~l~fspd---------  146 (432)
                      ++.  .+..+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++..  ...+ .|...|.+++|+|+         
T Consensus        86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~  165 (297)
T 2pm7_B           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  165 (297)
T ss_dssp             SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred             CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence            774  56778889999999999997  89999999999999999987632  2233 48889999999997         


Q ss_pred             ----CcEEEEEECCCeEEEEeCCceEEeecCCCc----eeeeecCCCchhhhHHhhhcccccccccCccccccccceecc
Q psy9319         147 ----QYLLAYACDDKYDRKQDCGNLKVFGFLPEP----IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKK  218 (432)
Q Consensus       147 ----g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~----~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~  218 (432)
                          +.+|++|+.|+.        |++||+.++.    ....+.+|......           ....|.+....-+++++
T Consensus       166 ~~~~~~~l~sgs~D~~--------v~lwd~~~~~~~~~~~~~l~~H~~~V~~-----------v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          166 GTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSDWVRD-----------VAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             ----CCEEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSSCEEE-----------EEECCCCSSSEEEEEEE
T ss_pred             CCCCcceEEEEcCCCc--------EEEEEEcCCCceEEEEEEecCCCCceEE-----------EEECCCCCCceEEEEEE
Confidence                579999999999        5555555544    44556666432111           11223321112278899


Q ss_pred             Ccceeecccchh
Q psy9319         219 KDYRVRADHFNK  230 (432)
Q Consensus       219 ~D~~lR~~d~~~  230 (432)
                      .|..+++||...
T Consensus       227 ~D~~v~iWd~~~  238 (297)
T 2pm7_B          227 QDRTCIIWTQDN  238 (297)
T ss_dssp             TTSCEEEEEESS
T ss_pred             CCCcEEEEEeCC
Confidence            999999998864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=2.9e-23  Score=205.91  Aligned_cols=199  Identities=16%  Similarity=0.176  Sum_probs=160.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE-----ccCCcCEEEEEEcC-CCCEEEEEeCCCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL-----KAHPVTCICIEFDP-TGKYFAVGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l-----~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~i   78 (432)
                      ..|.++.|+|++...+++++.|+++     .+||..+++.+..+     .+|...|.+++|+| ++.+|++|+.|++|++
T Consensus       158 ~~v~~~~~~~~~~~~l~s~s~D~~i-----~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~  232 (380)
T 3iz6_a          158 GYASSCQYVPDQETRLITGSGDQTC-----VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL  232 (380)
T ss_dssp             SCCCCCBCCSSSSSCEEEECTTSCE-----EEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred             cceEEEEEecCCCCEEEEECCCCcE-----EEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence            3467888999877666888888765     56677788888777     68999999999987 8899999999999999


Q ss_pred             EeCC-CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec--------CCceEEEEEccCCcE
Q psy9319          79 WDAA-ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--------QAATFTVAWHPKQYL  149 (432)
Q Consensus        79 wd~~-~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~--------~~~V~~l~fspdg~~  149 (432)
                      ||+. .+.++..+.+|.+.|++++|+|++.+|++|+.|++|++||+.++.++..+..        ...|.+++|+|+|.+
T Consensus       233 wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  312 (380)
T 3iz6_a          233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL  312 (380)
T ss_dssp             EETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred             EECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE
Confidence            9997 5577889999999999999999999999999999999999999998887742        124889999999999


Q ss_pred             EEEEECCCeEEEEeCCceEEeecCCCceeeee----cCCCchhhhHHhhhcccccccccCccccccccceeccCcceeec
Q psy9319         150 LAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK----RGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRA  225 (432)
Q Consensus       150 l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~----~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~  225 (432)
                      |++|+.|+.        |++||+.++..+..+    .+|..           ........|.+..   +++++.|..+++
T Consensus       313 l~~g~~dg~--------i~vwd~~~~~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~---l~sgs~D~~i~i  370 (380)
T 3iz6_a          313 LFAGYSNGD--------CYVWDTLLAEMVLNLGTLQNSHEG-----------RISCLGLSSDGSA---LCTGSWDKNLKI  370 (380)
T ss_dssp             EEEECTTSC--------EEEEETTTCCEEEEECCSCSSCCC-----------CCCEEEECSSSSE---EEEECTTSCEEE
T ss_pred             EEEEECCCC--------EEEEECCCCceEEEEecccCCCCC-----------ceEEEEECCCCCE---EEEeeCCCCEEE
Confidence            999999999        666666666655544    23321           1111222355555   899999999999


Q ss_pred             ccchh
Q psy9319         226 DHFNK  230 (432)
Q Consensus       226 ~d~~~  230 (432)
                      |++..
T Consensus       371 W~~~~  375 (380)
T 3iz6_a          371 WAFSG  375 (380)
T ss_dssp             EECCS
T ss_pred             EecCC
Confidence            99864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=5.8e-23  Score=219.56  Aligned_cols=216  Identities=16%  Similarity=0.112  Sum_probs=168.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.++.|+|++..+ ++++.|++     +++||..++.+...+.+|...|.+++|+|++.+|++|+.|++|++||+...
T Consensus       431 ~~v~~v~~s~~g~~l-~sgs~Dg~-----v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFA-LSGSWDGE-----LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE  504 (694)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSE-----EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             CcEEEEEECCCCCEE-EEEeCCCc-----EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence            457899999999876 78887764     567777899999999999999999999999999999999999999998754


Q ss_pred             eeEEEE---eeCCCCEEEEEEeeCC--CEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          85 TCIRTF---QRLDWPVRAISFSHDG--ALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        85 ~~~~~~---~~h~~~V~~i~~spdg--~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ......   .+|...|.+++|+|++  ..|++|+.|++|++||+.++.+...+. |.+.|.+++|+|+|.+|++|+.|+.
T Consensus       505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~  584 (694)
T 3dm0_A          505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV  584 (694)
T ss_dssp             EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred             cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            333222   3688899999999976  689999999999999999999888886 8899999999999999999999999


Q ss_pred             EEEEeCC--------------------------------ceEEeecCCCceeeeecCCCchhhhHHhh-----hcc---c
Q psy9319         159 DRKQDCG--------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAK-----VNQ---K  198 (432)
Q Consensus       159 I~vwd~~--------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~-----~~~---~  198 (432)
                      |++||+.                                .|++||+.++.++..+..+.-........     ...   .
T Consensus       585 i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (694)
T 3dm0_A          585 VLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY  664 (694)
T ss_dssp             CEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred             EEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence            9999973                                26778888877776665443211100000     000   0


Q ss_pred             ccccccCccccccccceeccCcceeecccch
Q psy9319         199 THRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       199 ~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      .......|++..   +++++.|.+||+|+..
T Consensus       665 ~~~l~~spdg~~---l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          665 CTSLNWSADGST---LFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEEECTTSSE---EEEEETTSEEEEEEC-
T ss_pred             eeeEEEcCCCCE---EEEEcCCCeEEEEecc
Confidence            111223455555   8899999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.91  E-value=8.6e-23  Score=199.38  Aligned_cols=201  Identities=14%  Similarity=0.065  Sum_probs=156.5

Q ss_pred             Cccccccc-----CC-CCcceeeeeeecCCCceeEEEEeec--CcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeE
Q psy9319           5 NFIPLLGL-----NP-RPSLYQSSVLTDISPKQLDFKFKEH--HKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALV   76 (432)
Q Consensus         5 n~I~~l~~-----~p-~~~~l~~s~s~D~~~~~~~i~~~d~--~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I   76 (432)
                      ..|.++.|     +| ++.+ +++++.|++++.|++.-...  ..+.+...+.+|...|.+++|+|++.+|++|+.|++|
T Consensus        22 ~~V~~~~~~~s~~~~~d~~~-l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v  100 (343)
T 2xzm_R           22 DWVTSIVAGFSQKENEDSPV-LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL  100 (343)
T ss_dssp             SCEEEEEECCCSSTTCCCCE-EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred             hhhhheeeEEEeecCCCCCE-EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcE
Confidence            45788888     66 5554 58999999988877642110  1245677899999999999999999999999999999


Q ss_pred             EEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE---ecCCceEEEEEccCC------
Q psy9319          77 SLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI---CIQAATFTVAWHPKQ------  147 (432)
Q Consensus        77 ~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~---~~~~~V~~l~fspdg------  147 (432)
                      ++||+.++.++..+.+|...|.+++|+|++.+|++|+.|++|++||+.........   .|...|.+++|+|++      
T Consensus       101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  180 (343)
T 2xzm_R          101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV  180 (343)
T ss_dssp             EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCC
T ss_pred             EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccccc
Confidence            99999999999999999999999999999999999999999999999743332222   367789999999987      


Q ss_pred             ----cEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCccee
Q psy9319         148 ----YLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRV  223 (432)
Q Consensus       148 ----~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~l  223 (432)
                          .+|++++.|+.|++||.         .+.....+.+|....           ......|.+..   ++.+..|..+
T Consensus       181 ~~~~~~l~s~~~d~~i~iwd~---------~~~~~~~~~~h~~~v-----------~~~~~s~~g~~---l~sgs~dg~v  237 (343)
T 2xzm_R          181 QPFAPYFASVGWDGRLKVWNT---------NFQIRYTFKAHESNV-----------NHLSISPNGKY---IATGGKDKKL  237 (343)
T ss_dssp             CSSCCEEEEEETTSEEEEEET---------TTEEEEEEECCSSCE-----------EEEEECTTSSE---EEEEETTCEE
T ss_pred             CCCCCEEEEEcCCCEEEEEcC---------CCceeEEEcCccccc-----------eEEEECCCCCE---EEEEcCCCeE
Confidence                79999999999555553         234444555554221           11122355555   8899999999


Q ss_pred             ecccch
Q psy9319         224 RADHFN  229 (432)
Q Consensus       224 R~~d~~  229 (432)
                      ++||..
T Consensus       238 ~iwd~~  243 (343)
T 2xzm_R          238 LIWDIL  243 (343)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=2.9e-23  Score=221.93  Aligned_cols=206  Identities=20%  Similarity=0.120  Sum_probs=166.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++++|++..++++|+.|++++.|++.-.+...+.....+.+|...|.+++|+|+|.+|++|+.|++|+|||+.++
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~  462 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG  462 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            46889999998877779999998877776643222234567789999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE----ecCCceEEEEEccCC--cEEEEEECCCe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQ--YLLAYACDDKY  158 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~----~~~~~V~~l~fspdg--~~l~s~s~d~~  158 (432)
                      .++..+.+|...|.+++|+|++.+|++|+.|++|++||+.........    .|...|.+++|+|++  ..+++++.|+.
T Consensus       463 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~  542 (694)
T 3dm0_A          463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT  542 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred             cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe
Confidence            999999999999999999999999999999999999998655433332    267779999999987  68999999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHH
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKK  232 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~  232 (432)
                              |++||+.++.+...+.+|.....           .....|.+..   +++++.|..+|+||....+
T Consensus       543 --------v~vwd~~~~~~~~~~~~h~~~v~-----------~v~~spdg~~---l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          543 --------VKVWNLSNCKLRSTLAGHTGYVS-----------TVAVSPDGSL---CASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             --------EEEEETTTCCEEEEECCCSSCEE-----------EEEECTTSSE---EEEEETTSBCEEEETTTTE
T ss_pred             --------EEEEECCCCcEEEEEcCCCCCEE-----------EEEEeCCCCE---EEEEeCCCeEEEEECCCCc
Confidence                    66666777777777777753211           1122345554   7899999999999987643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.9e-22  Score=193.79  Aligned_cols=207  Identities=20%  Similarity=0.208  Sum_probs=162.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++..+ ++++.|+.     +.+||..+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++
T Consensus        33 ~~v~~~~~s~~~~~l-~~~~~dg~-----i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLL-FSCSKDSS-----ASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             SCEEEEEECTTSCEE-EEEESSSC-----EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             ceEEEEEEcCCCCEE-EEEeCCCE-----EEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            568999999999876 66666664     567777899999999999999999999999999999999999999999887


Q ss_pred             eeEEEEeeCCC------------------------------------------------------------CEEEEEEee
Q psy9319          85 TCIRTFQRLDW------------------------------------------------------------PVRAISFSH  104 (432)
Q Consensus        85 ~~~~~~~~h~~------------------------------------------------------------~V~~i~~sp  104 (432)
                      .++..+. +..                                                            .+.+++|+|
T Consensus       107 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (369)
T 3zwl_B          107 QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST  185 (369)
T ss_dssp             CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred             cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence            6655443 222                                                            677777778


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC-----------------
Q psy9319         105 DGALIASGSEDLTIDIAHVES-GKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG-----------------  165 (432)
Q Consensus       105 dg~~l~sgs~dg~V~vwd~~~-~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~-----------------  165 (432)
                      ++.+|++++.||.|.+||+.+ +..+..+. |...|.+++|+|++.+|++++.|+.|++||+.                 
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  265 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTA  265 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeE
Confidence            888888888889999999988 66777666 88899999999999999999999999999875                 


Q ss_pred             ------------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccce
Q psy9319         166 ------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLL  215 (432)
Q Consensus       166 ------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glL  215 (432)
                                                    .+.+||+.++..+..+.+|...           .......|.+..   ++
T Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~---l~  331 (369)
T 3zwl_B          266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-----------LNTVAISPQGTS---YA  331 (369)
T ss_dssp             EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC-----------EEEEEECTTSSE---EE
T ss_pred             EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-----------EEEEEECCCCCE---EE
Confidence                                          3455666666555555554321           111122344444   78


Q ss_pred             eccCcceeecccchhHH
Q psy9319         216 EKKKDYRVRADHFNKKK  232 (432)
Q Consensus       216 e~~~D~~lR~~d~~~k~  232 (432)
                      .+..|..+++|++....
T Consensus       332 s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          332 SGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEETTSEEEEEEECHHH
T ss_pred             EEcCCCeEEEEECcccc
Confidence            88999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=6.1e-23  Score=196.93  Aligned_cols=155  Identities=17%  Similarity=0.226  Sum_probs=130.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc----eeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL----EEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~----~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~i   78 (432)
                      +.|.+++|+|++..+ ++++.|+.+..|++     .++    .....+.+|..+|++++|+|  ++.+|++|+.|+.|++
T Consensus        12 ~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHV-ATCSSDQHIKVFKL-----DKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTSEEEEEEE-----CSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cceeEEEEcCCCCEE-EEeeCCCeEEEEEC-----CCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            568999999999876 77777776555544     444    56778899999999999999  6999999999999999


Q ss_pred             EeCCCC---------eeEEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcE-------------------
Q psy9319          79 WDAAEL---------TCIRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKK-------------------  128 (432)
Q Consensus        79 wd~~~~---------~~~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~-------------------  128 (432)
                      ||+.++         ..+..+.+|...|.+++|+|+  +.+|++++.||.|++||+.++..                   
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999876         567888899999999999999  99999999999999999875431                   


Q ss_pred             -----------------------------------------EEEEe-cCCceEEEEEccCC----cEEEEEECCCeEEEE
Q psy9319         129 -----------------------------------------VYDIC-IQAATFTVAWHPKQ----YLLAYACDDKYDRKQ  162 (432)
Q Consensus       129 -----------------------------------------~~~~~-~~~~V~~l~fspdg----~~l~s~s~d~~I~vw  162 (432)
                                                               +..+. |...|.+++|+|++    .+|++|+.|+.|++|
T Consensus       166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw  245 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF  245 (351)
T ss_dssp             CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred             cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence                                                     22222 67789999999998    899999999998888


Q ss_pred             eCC
Q psy9319         163 DCG  165 (432)
Q Consensus       163 d~~  165 (432)
                      |+.
T Consensus       246 d~~  248 (351)
T 3f3f_A          246 KIT  248 (351)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=9.1e-23  Score=201.29  Aligned_cols=207  Identities=10%  Similarity=0.076  Sum_probs=162.6

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC---CcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH---PVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h---~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ...|.+++|+|++..++++++.|+.+     .+||..+ ..+..+..|   ...|.+++|+|++.+|++|+.|+.|++||
T Consensus       118 ~~~v~~~~~~~~~~~~l~s~~~d~~i-----~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          118 GDAITGMKFNQFNTNQLFVSSIRGAT-----TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             TCBEEEEEEETTEEEEEEEEETTTEE-----EEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             CCceeEEEeCCCCCCEEEEEeCCCEE-----EEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            35678999999554455888877755     5555554 555555544   48899999999999999999999999999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCC----CcEEEEEecCCceEEEEEcc-CCcEEEEEE
Q psy9319          81 AAELTCIRTFQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVES----GKKVYDICIQAATFTVAWHP-KQYLLAYAC  154 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~----~~~~~~~~~~~~V~~l~fsp-dg~~l~s~s  154 (432)
                      + .+.++..+.+|...|.+++|+|++. +|++|+.|+.|++||+.+    +.++..+.|...|.+++|+| ++.+|++++
T Consensus       192 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          192 L-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             T-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred             C-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence            9 5778899999999999999999998 999999999999999998    77888888999999999999 999999999


Q ss_pred             CCCeEEEEeCC-------------------------------------------------ceEEeecCCCceeeeecCCC
Q psy9319         155 DDKYDRKQDCG-------------------------------------------------NLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       155 ~d~~I~vwd~~-------------------------------------------------~i~vwd~~~~~~~~~~~g~~  185 (432)
                      .|+.|++||+.                                                 .|++||+.++..+..+.++.
T Consensus       271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~  350 (383)
T 3ei3_B          271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPN  350 (383)
T ss_dssp             SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred             CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCC
Confidence            99999999863                                                 36678887777777776543


Q ss_pred             chhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       186 mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      .....         ......|.+..   ++.++ |..|++||...
T Consensus       351 ~~~~~---------~~~~~s~~g~~---l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          351 AAGII---------SLNKFSPTGDV---LASGM-GFNILIWNRED  382 (383)
T ss_dssp             BCSCC---------CEEEECTTSSE---EEEEE-TTEEEEEECC-
T ss_pred             CCceE---------EEEEEecCccE---EEEec-CCcEEEEecCC
Confidence            11111         00112344444   56664 99999998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.90  E-value=9.5e-23  Score=214.95  Aligned_cols=198  Identities=17%  Similarity=0.127  Sum_probs=158.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++...+++++.|+++.     +||..++++...+.+|...|.+++|+|+|.+|++|+.|++|++||+.++
T Consensus       148 ~~v~~v~f~p~~~~~l~s~s~D~~v~-----lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIISGSDDNTVA-----IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEE-----EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCceEEEECCCCCeEEEEEeCCCeEE-----EEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence            35789999999987669999998764     5566788889999999999999999999999999999999999999999


Q ss_pred             eeEEEEe-------eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-------------------------
Q psy9319          85 TCIRTFQ-------RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-------------------------  132 (432)
Q Consensus        85 ~~~~~~~-------~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-------------------------  132 (432)
                      .++..+.       +|.+.|.+++|+|+|.+|++++.|++|++||+.+++++..+                         
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence            9888884       79999999999999999999999999999999987665432                         


Q ss_pred             -------------------ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee-cCCCchhhhHH
Q psy9319         133 -------------------CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK-RGGTMSSWVKA  192 (432)
Q Consensus       133 -------------------~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~-~g~~mss~~~a  192 (432)
                                         .|...|.+++|+|+|.+|++++.|+.        |++||+.++.....+ .+|.....   
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~--------v~~Wd~~~~~~~~~~~~~h~~~v~---  371 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH--------INSWDISTGISNRVFPDVHATMIT---  371 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTCCEEECSSCSCSSCEE---
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc--------EEEEECCCCceeeecccCCcceEE---
Confidence                               26678999999999999999999999        666666666554433 22321100   


Q ss_pred             hhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         193 AKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       193 ~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                              .....+.+    .++..+.|..+|+|+...
T Consensus       372 --------~~~~s~~~----~l~s~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          372 --------GIKTTSKG----DLFTVSWDDHLKVVPAGG  397 (611)
T ss_dssp             --------EEEECTTS----CEEEEETTTEEEEECSSS
T ss_pred             --------EEEECCCC----cEEEEEcCCceEEeecCC
Confidence                    00011211    267788899999998654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.90  E-value=2.2e-22  Score=193.25  Aligned_cols=168  Identities=20%  Similarity=0.292  Sum_probs=144.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc-eeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL-EEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~   82 (432)
                      +.|.+++|+|++..+ ++++.|++++.|     |..++ .....+.+|...|.+++|+| ++..|++|+.|++|++||+.
T Consensus        98 ~~v~~~~~~~~~~~l-~sgs~D~~v~lW-----d~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~  171 (304)
T 2ynn_A           98 DYIRSIAVHPTKPYV-LSGSDDLTVKLW-----NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG  171 (304)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTSCEEEE-----EGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred             CcEEEEEEcCCCCEE-EEECCCCeEEEE-----ECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            568899999999876 888888876555     54455 55678899999999999999 67999999999999999998


Q ss_pred             CCeeEEEEe-eCCCCEEEEEEee--CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          83 ELTCIRTFQ-RLDWPVRAISFSH--DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        83 ~~~~~~~~~-~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ++.....+. +|...|..+.|+|  ++.+|++|+.|++|++||+.++.++..+. |...|.+++|+|++.+|++|+.|+.
T Consensus       172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT  251 (304)
T ss_dssp             CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe
Confidence            877665554 5668899999987  77899999999999999999999999887 8899999999999999999999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCc
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTM  186 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~m  186 (432)
                              |++||+.++.++..+.+|.-
T Consensus       252 --------i~iWd~~~~~~~~~~~~~~~  271 (304)
T 2ynn_A          252 --------LKIWNSSTYKVEKTLNVGLE  271 (304)
T ss_dssp             --------EEEEETTTCCEEEEECCSSS
T ss_pred             --------EEEEECCCCceeeeccCCCc
Confidence                    77777777788777766643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.90  E-value=4.6e-23  Score=203.00  Aligned_cols=204  Identities=14%  Similarity=0.135  Sum_probs=158.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|.+++|+|++..+ ++++.|+.+     ++||..+++.+..+.+|...|++++|+|++ .++++++.|++|++||+.+
T Consensus       140 ~~V~~v~~spdg~~l-~sgs~dg~v-----~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          140 DIVKTLSVFSDGTQA-VSGGKDFSV-----KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTSCE-----EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             CCEEEEEECCCCCEE-EEEeCCCeE-----EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            568999999999877 778887764     667778999999999999999999999987 4789999999999999998


Q ss_pred             CeeEEEEe--eCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCC-cEEEEEECCCe
Q psy9319          84 LTCIRTFQ--RLDWPVRAISFSHD-GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQ-YLLAYACDDKY  158 (432)
Q Consensus        84 ~~~~~~~~--~h~~~V~~i~~spd-g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg-~~l~s~s~d~~  158 (432)
                      +.+...+.  .|...+.+++|+|+ +.+|++|+.|+.|++||+.+++++..+. |...|.+++|+|++ .+|++|+.|++
T Consensus       214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~  293 (357)
T 4g56_B          214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT  293 (357)
T ss_dssp             SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence            88765543  46778999999996 5689999999999999999999888886 88899999999987 68999999999


Q ss_pred             EEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCc-cccccccceeccCcceeecccchhHHHHHHH
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQP-EDRRKLGLLEKKKDYRVRADHFNKKKKTLQI  237 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp-~~r~~~glLe~~~D~~lR~~d~~~k~~~l~~  237 (432)
                              |++||+.+++++..+ +|.....           .....| ++..   +++++.|..|++|+.....+....
T Consensus       294 --------i~iwd~~~~~~~~~~-~H~~~V~-----------~vafsP~d~~~---l~s~s~Dg~v~iW~~~~~~~~~~~  350 (357)
T 4g56_B          294 --------VAVLDADFSEVFRDL-SHRDFVT-----------GVAWSPLDHSK---FTTVGWDHKVLHHHLPSEGRTENL  350 (357)
T ss_dssp             --------EEEECTTSCEEEEEC-CCSSCEE-----------EEEECSSSTTE---EEEEETTSCEEEEECC--------
T ss_pred             --------EEEEECCCCcEeEEC-CCCCCEE-----------EEEEeCCCCCE---EEEEcCCCeEEEEECCCCCccccc
Confidence                    666677776665543 4432111           111223 2333   778999999999998765444333

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.7e-23  Score=205.68  Aligned_cols=208  Identities=14%  Similarity=0.173  Sum_probs=153.1

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc--eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL--EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      .+.|.+++|+|++..+ ++++.|+.+.+|++.     ++  ..+..+.+|...|++++|+|++.+|++|+.|++|++||+
T Consensus        11 ~~~v~~~~~s~~g~~l-~~~~~d~~i~iw~~~-----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEF-VTTTATNQVELYEQD-----GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             SSCCSCCEECSSSSEE-ECCCSSSCBCEEEEE-----TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCcEEEEEECCCCCEE-EEecCCCEEEEEEcc-----CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            4578999999999876 788888888777765     55  678889999999999999999999999999999999999


Q ss_pred             CCCe---eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE---EEEEe--cCCceEEEEEccCCcEEEEE
Q psy9319          82 AELT---CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK---VYDIC--IQAATFTVAWHPKQYLLAYA  153 (432)
Q Consensus        82 ~~~~---~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~---~~~~~--~~~~V~~l~fspdg~~l~s~  153 (432)
                      .++.   ....+.+|...|.+++|+|++.+|++|+.|+.|++||+.++..   ...+.  |...|.+++|+|++.+|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            9876   6777888999999999999999999999999999999998873   45554  78899999999999999999


Q ss_pred             ECCCeEEEEeCCceE--------Eeec--CCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCccee
Q psy9319         154 CDDKYDRKQDCGNLK--------VFGF--LPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRV  223 (432)
Q Consensus       154 s~d~~I~vwd~~~i~--------vwd~--~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~l  223 (432)
                      +.|+.|++||+....        .|..  ..+.++..+ +|...           .......|.+..   ++.+..|..+
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------v~~~~~sp~~~~---l~~~~~d~~i  229 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW-----------VHAVGFSPSGNA---LAYAGHDSSV  229 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS-----------EEEEEECTTSSC---EEEEETTTEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce-----------EEEEEECCCCCE---EEEEeCCCcE
Confidence            999996666653211        0110  122333333 33211           111222345554   7888999999


Q ss_pred             ecccchhHH
Q psy9319         224 RADHFNKKK  232 (432)
Q Consensus       224 R~~d~~~k~  232 (432)
                      ++||....+
T Consensus       230 ~iwd~~~~~  238 (377)
T 3dwl_C          230 TIAYPSAPE  238 (377)
T ss_dssp             C-CEECSTT
T ss_pred             EEEECCCCC
Confidence            999987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=2.2e-22  Score=208.94  Aligned_cols=191  Identities=23%  Similarity=0.328  Sum_probs=161.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++..+ ++++.|+.     +.+|+. +++.+..+.+|...|++++|+|++.+|++++.|+.|++||. ++
T Consensus       386 ~~v~~~~~s~dg~~l-~~~~~d~~-----v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~  457 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTI-ASASDDKT-----VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NG  457 (577)
T ss_dssp             SCEEEEEECTTSSCE-EEEETTSE-----EEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TS
T ss_pred             CCeEEEEECCCCCEE-EEEeCCCE-----EEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CC
Confidence            457889999999877 77777765     455663 67888899999999999999999999999999999999997 46


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ..+..+.+|...|++++|+|++.+|++++.|+.|++||. +++++..+. |...|.+++|+|+|.+|++++.|+.     
T Consensus       458 ~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-----  531 (577)
T 2ymu_A          458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-----  531 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-----
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-----
Confidence            788899999999999999999999999999999999995 677777776 8899999999999999999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                         |++||. ++.++..+.+|.-....           ....|+++.   +++++.|.+||+||
T Consensus       532 ---v~lwd~-~~~~~~~~~~h~~~v~~-----------~~fs~dg~~---l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          532 ---VKLWNR-NGQLLQTLTGHSSSVWG-----------VAFSPDGQT---IASASSDKTVKLWN  577 (577)
T ss_dssp             ---EEEECT-TSCEEEEEECCSSCEEE-----------EEECTTSSC---EEEEETTSCEEEEC
T ss_pred             ---EEEEeC-CCCEEEEEcCCCCCEEE-----------EEEcCCCCE---EEEEeCCCEEEEeC
Confidence               666664 46778888887532211           223466666   88999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.90  E-value=2.9e-23  Score=204.41  Aligned_cols=199  Identities=12%  Similarity=0.065  Sum_probs=153.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee----EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ----NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~----~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ..|.+++|+|++.++  +++.|+++++|+     +.+++..    ....+|.+.|++++|+|+|.+|++|+.|++|++||
T Consensus        95 ~~V~~~~~s~d~~~l--~~s~dg~v~lWd-----~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           95 AGVTDVAWVSEKGIL--VASDSGAVELWE-----ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             SCEEEEEEETTTEEE--EEETTSCEEEC-------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             CCEEEEEEcCCCCEE--EEECCCEEEEee-----ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            457899999998644  456677665554     4455433    34558999999999999999999999999999999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccC-CcEEEEEEC
Q psy9319          81 AAELTCIRTFQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPK-QYLLAYACD  155 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspd-g~~l~s~s~  155 (432)
                      +.++.++..+.+|...|++++|+|++. ++++++.|++|++||+++++++..+.   +...+.+++|+|+ +.+|++|+.
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence            999999999999999999999999874 78999999999999999998776553   5667999999997 478999999


Q ss_pred             CCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         156 DKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      |+.        |++||+.++..+..+.+|......           ....|.+..  -+..++.|..||+||....
T Consensus       248 d~~--------i~~wd~~~~~~~~~~~~~~~~v~~-----------l~~sp~~~~--~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          248 TGN--------VSLVNIKNPDSAQTSAVHSQNITG-----------LAYSYHSSP--FLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             SSC--------EEEEESSCGGGCEEECCCSSCEEE-----------EEECSSSSC--CEEEEETTSCEEEECTTSC
T ss_pred             ccc--------eeEEECCCCcEeEEEeccceeEEE-----------EEEcCCCCC--EEEEEeCCCEEEEEECCCC
Confidence            999        677777777777777766532111           112233221  1567899999999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.90  E-value=1e-22  Score=202.79  Aligned_cols=199  Identities=13%  Similarity=0.089  Sum_probs=157.5

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .+....++|++..+ ++++.|+.     +.+||..++.....+.+|.+.|++++|+|++.+|++|+.|+.|++||+.++.
T Consensus        99 ~~~~~~~~~~~~~l-~~~~~dg~-----i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A           99 YTAVDTAKLQMRRF-ILGTTEGD-----IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             EEEEEEECSSSCEE-EEEETTSC-----EEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ceEEEEEecCCCEE-EEEECCCC-----EEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            34455678888876 77777765     5667777888888889999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe----cCCce---------------------EE
Q psy9319          86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC----IQAAT---------------------FT  140 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~----~~~~V---------------------~~  140 (432)
                      .+..+.+|...|.+++|+|++.+|++|+.|++|++||+.+++++..+.    +...|                     .+
T Consensus       173 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~  252 (420)
T 3vl1_A          173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN  252 (420)
T ss_dssp             CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred             CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence            999999999999999999999999999999999999999999888875    33334                     44


Q ss_pred             EEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecC-CCchhhhHHhhhcccccccccCcccc-ccccceecc
Q psy9319         141 VAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRG-GTMSSWVKAAKVNQKTHRERHQPEDR-RKLGLLEKK  218 (432)
Q Consensus       141 l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g-~~mss~~~a~~~~~~~h~er~qp~~r-~~~glLe~~  218 (432)
                      ++|+|+|.+|++|+.|+.        +++||+.++..+..+.. |...           .......|.+. .   ++.+.
T Consensus       253 ~~~s~~~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~---l~~g~  310 (420)
T 3vl1_A          253 LEFGTYGKYVIAGHVSGV--------ITVHNVFSKEQTIQLPSKFTCS-----------CNSLTVDGNNANY---IYAGY  310 (420)
T ss_dssp             TCSSCTTEEEEEEETTSC--------EEEEETTTCCEEEEECCTTSSC-----------EEEEEECSSCTTE---EEEEE
T ss_pred             eEEcCCCCEEEEEcCCCe--------EEEEECCCCceeEEcccccCCC-----------ceeEEEeCCCCCE---EEEEe
Confidence            556789999999999999        66666666665554432 2111           11112234443 3   78889


Q ss_pred             CcceeecccchhHH
Q psy9319         219 KDYRVRADHFNKKK  232 (432)
Q Consensus       219 ~D~~lR~~d~~~k~  232 (432)
                      .|..+++||....+
T Consensus       311 ~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          311 ENGMLAQWDLRSPE  324 (420)
T ss_dssp             TTSEEEEEETTCTT
T ss_pred             CCCeEEEEEcCCCc
Confidence            99999999987643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.89  E-value=1.2e-22  Score=201.54  Aligned_cols=205  Identities=16%  Similarity=0.118  Sum_probs=146.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCC-------------------
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGK-------------------   65 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~-------------------   65 (432)
                      +.|.+++|+|++..+ ++++.|+++.     +||..+++....+.+|...|.+++|+|+|.                   
T Consensus        67 ~~V~~~~~sp~~~~l-~s~s~D~~v~-----iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~  140 (380)
T 3iz6_a           67 GKVYSLDWTPEKNWI-VSASQDGRLI-----VWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ  140 (380)
T ss_dssp             SCEEEEEECTTSSCE-EEEETTSEEE-----EEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred             cEEEEEEEcCCCCEE-EEEeCCCeEE-----EEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence            468999999999876 8888887654     455556666666666655555555555544                   


Q ss_pred             -------------------------------EEEEEeCCCeEEEEeCCCCeeEEEE-----eeCCCCEEEEEEee-CCCE
Q psy9319          66 -------------------------------YFAVGSKDALVSLWDAAELTCIRTF-----QRLDWPVRAISFSH-DGAL  108 (432)
Q Consensus        66 -------------------------------~L~sgs~dg~I~iwd~~~~~~~~~~-----~~h~~~V~~i~~sp-dg~~  108 (432)
                                                     .|++|+.|++|++||+.++.++..+     .+|...|.+++|+| ++.+
T Consensus       141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred             ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence                                           4566666677777777777776666     56888999999987 8899


Q ss_pred             EEEEeCCCeEEEEeCC-CCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCc
Q psy9319         109 IASGSEDLTIDIAHVE-SGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTM  186 (432)
Q Consensus       109 l~sgs~dg~V~vwd~~-~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~m  186 (432)
                      |++|+.|++|++||++ .+.++..+. |.+.|.+++|+|+|.+|++|+.|++        +++||+.++..+..+..+..
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--------i~lwd~~~~~~~~~~~~~~~  292 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT--------CRLFDMRTGHQLQVYNREPD  292 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC--------EEEEETTTTEEEEEECCCCS
T ss_pred             EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe--------EEEEECCCCcEEEEeccccc
Confidence            9999999999999998 456666665 8899999999999999999999999        66666666666655544321


Q ss_pred             hhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       187 ss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ..-..    ..........|.++.   ++.+..|..+++||...
T Consensus       293 ~~~~~----~~~v~~~~~s~~g~~---l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          293 RNDNE----LPIVTSVAFSISGRL---LFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             SSCCS----SCSCSEEEECSSSSE---EEEECTTSCEEEEETTT
T ss_pred             ccccc----cCceEEEEECCCCCE---EEEEECCCCEEEEECCC
Confidence            10000    000111222355555   78889999999998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=2.9e-21  Score=185.48  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=140.1

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ...|.++.|+|++..+ ++++.|+     .+.+|+..++.  ....+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus        97 ~~~v~~~~~~~~~~~l-~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           97 DNYIRSCKLLPDGCTL-IVGGEAS-----TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             TSBEEEEEECTTSSEE-EEEESSS-----EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCcEEEEEEcCCCCEE-EEEcCCC-----cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            4568899999999876 6666665     45666666665  66778899999999999999999999999999999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      .++..+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++..+..+.+...+.+++|+|++.++++++.++.|++
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~  250 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV  250 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence            99999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EeCC
Q psy9319         162 QDCG  165 (432)
Q Consensus       162 wd~~  165 (432)
                      ||+.
T Consensus       251 ~~~~  254 (337)
T 1gxr_A          251 LHVN  254 (337)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.89  E-value=3.5e-22  Score=197.37  Aligned_cols=198  Identities=12%  Similarity=0.138  Sum_probs=154.9

Q ss_pred             CcccccccCCCCcceee-eeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQS-SVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~-s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .++.+++|+|++.++++ +++.|+     .|++||..+++++..+. |.+.|.+++|+|||.+|++++.+ .+.+|+..+
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~-----~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~  206 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPA-----IMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVT  206 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSC-----EEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTT
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCC-----EEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEecc
Confidence            35678999999998743 444554     56778888999988885 67889999999999999999855 566777666


Q ss_pred             CeeEEE--EeeCCCCEEEEEEeeCCCEEEEEeCCC----eEEEEeCCCCcEEE----EE-ecCCceEEEEEccCCcEEEE
Q psy9319          84 LTCIRT--FQRLDWPVRAISFSHDGALIASGSEDL----TIDIAHVESGKKVY----DI-CIQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        84 ~~~~~~--~~~h~~~V~~i~~spdg~~l~sgs~dg----~V~vwd~~~~~~~~----~~-~~~~~V~~l~fspdg~~l~s  152 (432)
                      +..+..  ..+|...|.+++|+|++.++++++.|+    .+++||+..+....    .+ .|...|.+++|+|+|.+||+
T Consensus       207 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las  286 (365)
T 4h5i_A          207 GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL  286 (365)
T ss_dssp             CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred             CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence            665543  346888999999999999999999877    68899987765422    23 27788999999999999999


Q ss_pred             EECCCeEEEEeCCceEEeecCCCceeeee-cCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPIKKRK-RGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~~~~~-~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      |+.|++        |++||+.++.++..+ .+|....           ......|+++.   +++++.|.+||+||....
T Consensus       287 gs~D~~--------V~iwd~~~~~~~~~~~~gH~~~V-----------~~v~fSpdg~~---laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          287 ASNDNS--------IALVKLKDLSMSKIFKQAHSFAI-----------TEVTISPDSTY---VASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSC--------EEEEETTTTEEEEEETTSSSSCE-----------EEEEECTTSCE---EEEEETTSEEEEEECCTT
T ss_pred             EcCCCE--------EEEEECCCCcEEEEecCcccCCE-----------EEEEECCCCCE---EEEEeCCCeEEEEEcCCC
Confidence            999999        777778888887764 5775332           12333577777   899999999999998543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=9e-22  Score=212.76  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=140.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..+ ++++.|+     .+.+||..++..+..+.+|.++|++++|+|+|.+|++|+.||.|++||+.++
T Consensus        14 ~~v~~i~~sp~~~~l-a~~~~~g-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~   87 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWV-LTTLYSG-----RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (814)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTS-----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             CceEEEEECCCCCEE-EEEeCCC-----EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            568999999999877 5555554     5778888899999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEcc-CCcEEEEEECCCeEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHP-KQYLLAYACDDKYDRK  161 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fsp-dg~~l~s~s~d~~I~v  161 (432)
                      ..+..+.+|.+.|++++|+|++.+|++|+.||.|++||+.++ .....+. |...|.+++|+| ++..|++++.|+.|++
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v  167 (814)
T 3mkq_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (814)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            999999999999999999999999999999999999999987 5555554 888999999999 8899999999999999


Q ss_pred             EeC
Q psy9319         162 QDC  164 (432)
Q Consensus       162 wd~  164 (432)
                      ||+
T Consensus       168 wd~  170 (814)
T 3mkq_A          168 WSL  170 (814)
T ss_dssp             EET
T ss_pred             EEC
Confidence            986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=1.4e-21  Score=189.91  Aligned_cols=156  Identities=11%  Similarity=0.107  Sum_probs=133.6

Q ss_pred             CcccccccCCC---CcceeeeeeecCCCceeEEEEeecCcceeeEEEcc-----CCcCEEEEEEcCC----CCEEEEEeC
Q psy9319           5 NFIPLLGLNPR---PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA-----HPVTCICIEFDPT----GKYFAVGSK   72 (432)
Q Consensus         5 n~I~~l~~~p~---~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~-----h~~~V~~l~~spd----g~~L~sgs~   72 (432)
                      ..|.+++|+|+   +..++++++.++     .+.+|+..++..+..+..     |...|++++|+|+    |.+|++|+.
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~-----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSN-----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETT-----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             CceEEEEEecccCCCCceEEEECCCC-----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            46899999984   333334444443     356666667777666654     5578999999998    679999999


Q ss_pred             CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEE----ecCCceEEEEEccCC
Q psy9319          73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQ  147 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~----~~~~~V~~l~fspdg  147 (432)
                      ||.|++||+.++..+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+    .|...|.+++|+|++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence            99999999999999999999999999999999 9999999999999999999999998887    488899999999999


Q ss_pred             cEEEEEECCCeEEEEeCC
Q psy9319         148 YLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       148 ~~l~s~s~d~~I~vwd~~  165 (432)
                      .+|++++.|+.|++||+.
T Consensus       174 ~~l~~~~~dg~i~i~d~~  191 (366)
T 3k26_A          174 EKIMSCGMDHSLKLWRIN  191 (366)
T ss_dssp             SEEEEEETTSCEEEEESC
T ss_pred             CEEEEecCCCCEEEEECC
Confidence            999999999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.89  E-value=1.2e-22  Score=196.20  Aligned_cols=201  Identities=15%  Similarity=0.111  Sum_probs=153.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc--eeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL--EEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~--~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd   80 (432)
                      +.|.+++|+|++..+ ++++.|+++++|++.     ++  ..+..+.+|.++|.+++|+|  ++.+|++|+.|++|++||
T Consensus        14 ~~V~~v~~s~~g~~l-asgs~D~~v~lwd~~-----~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRL-ATCSSDRSVKIFDVR-----NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             CCEEEEEECGGGCEE-EEEETTTEEEEEEEE-----TTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             CeEEEeeEcCCCCEE-EEEeCCCeEEEEEec-----CCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            568899999999876 888999887766654     44  35678999999999999986  489999999999999999


Q ss_pred             CCCC--eeEEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcEEE---EE-ecCCceEEEEEccC------
Q psy9319          81 AAEL--TCIRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKKVY---DI-CIQAATFTVAWHPK------  146 (432)
Q Consensus        81 ~~~~--~~~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~~~---~~-~~~~~V~~l~fspd------  146 (432)
                      +.++  .....+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++....   .+ .|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9887  356778899999999999997  7899999999999999998764322   12 27778999999997      


Q ss_pred             -----------CcEEEEEECCCeEEEEeCCceEEeecCCC---ceeeeecCCCchhhhHHhhhcccccccccCccccc-c
Q psy9319         147 -----------QYLLAYACDDKYDRKQDCGNLKVFGFLPE---PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRR-K  211 (432)
Q Consensus       147 -----------g~~l~s~s~d~~I~vwd~~~i~vwd~~~~---~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~-~  211 (432)
                                 +.+|++|+.|+.        |++||+..+   ..+..+.+|.....           .....|.+.. .
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~--------v~lWd~~~~~~~~~~~~l~~h~~~V~-----------~v~~sp~~~~~~  228 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNL--------IKLWKEEEDGQWKEEQKLEAHSDWVR-----------DVAWAPSIGLPT  228 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSB--------CCEEEECTTSCEEEEECCBCCSSCEE-----------EEECCCCSSCSC
T ss_pred             cccccccCccccceEEEecCCCe--------EEEEEeCCCCccceeeecccCCCceE-----------EEEecCCCCCCC
Confidence                       468999999999        666665533   24555666642211           1112233211 1


Q ss_pred             ccceeccCcceeecccchh
Q psy9319         212 LGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       212 ~glLe~~~D~~lR~~d~~~  230 (432)
                      .-+++++.|..+++|+...
T Consensus       229 ~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CEEEEEETTCEEEEEECSS
T ss_pred             ceEEEEcCCCeEEEEEccC
Confidence            2278899999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.89  E-value=6.2e-23  Score=207.10  Aligned_cols=155  Identities=10%  Similarity=0.035  Sum_probs=126.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc--CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA--HPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      ..|.+++|+|.+..++++|+.|+++++|     |..+.........  +...+.+++|+|++.+|++|+.||.|++||+.
T Consensus       165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iw-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~  239 (435)
T 4e54_B          165 GSITGLKFNPLNTNQFYASSMEGTTRLQ-----DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD  239 (435)
T ss_dssp             CCCCEEEECSSCTTEEEEECSSSCEEEE-----ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEe-----eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence            4689999999655555899999876555     5444433333333  34567899999999999999999999999987


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCcEEEEE----ecCCceEEEEEccCCcEEEEEECCC
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~~~~~~~~----~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                       +..+..+.+|...|.+++|+|++. +|++|+.|++|++||++++.....+    .|...|.+++|+|+|.+|++++.|+
T Consensus       240 -~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~  318 (435)
T 4e54_B          240 -GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS  318 (435)
T ss_dssp             -SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred             -cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence             456778889999999999999875 7889999999999999886644332    4888999999999999999999999


Q ss_pred             eEEEEeCC
Q psy9319         158 YDRKQDCG  165 (432)
Q Consensus       158 ~I~vwd~~  165 (432)
                      .|++||+.
T Consensus       319 ~i~iwd~~  326 (435)
T 4e54_B          319 EIRVYSAS  326 (435)
T ss_dssp             CEEEEESS
T ss_pred             EEEEEECC
Confidence            99998863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=4.8e-22  Score=197.93  Aligned_cols=199  Identities=16%  Similarity=0.181  Sum_probs=157.2

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcc----eeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL----EEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~----~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~   82 (432)
                      ..++++|+...++++++.|+.+.     +|+....    ..+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~-----v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFL-----VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEE-----EEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             CcEEECCCeEEEEEEEcCCCEEE-----EEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            45778888777767777777654     4444332    24556789999999999999 99999999999999999999


Q ss_pred             CC-------eeEEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCcEEEEE--e-cCCceEEEEEccCCcEEE
Q psy9319          83 EL-------TCIRTFQRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGKKVYDI--C-IQAATFTVAWHPKQYLLA  151 (432)
Q Consensus        83 ~~-------~~~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~~~~~~~--~-~~~~V~~l~fspdg~~l~  151 (432)
                      ++       .++..+.+|...|.+++|+|++ .+|++|+.|+.|++||+.+++++..+  . |...|.+++|+|++.+|+
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence            87       6688899999999999999998 69999999999999999999999888  4 888999999999999999


Q ss_pred             EEECCCeEEEEeCCceEEeecCCCceeeee-cCCCchhhhHHhhhcccccccccCccccccccceec---cCcceeeccc
Q psy9319         152 YACDDKYDRKQDCGNLKVFGFLPEPIKKRK-RGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEK---KKDYRVRADH  227 (432)
Q Consensus       152 s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~-~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~---~~D~~lR~~d  227 (432)
                      +++.|+.        +++||+.++..+..+ .+|.....          ......|.+..   ++.+   ..|..+++||
T Consensus       193 ~~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~---l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          193 TSCRDKR--------VRVIEPRKGTVVAEKDRPHEGTRP----------VHAVFVSEGKI---LTTGFSRMSERQVALWD  251 (402)
T ss_dssp             EEETTSE--------EEEEETTTTEEEEEEECSSCSSSC----------CEEEECSTTEE---EEEEECTTCCEEEEEEE
T ss_pred             EEecCCc--------EEEEeCCCCceeeeeccCCCCCcc----------eEEEEcCCCcE---EEEeccCCCCceEEEEc
Confidence            9999999        666667777777666 45542211          11112244333   4455   6899999999


Q ss_pred             chhHH
Q psy9319         228 FNKKK  232 (432)
Q Consensus       228 ~~~k~  232 (432)
                      ....+
T Consensus       252 ~~~~~  256 (402)
T 2aq5_A          252 TKHLE  256 (402)
T ss_dssp             TTBCS
T ss_pred             Ccccc
Confidence            87643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.89  E-value=3.6e-22  Score=198.89  Aligned_cols=199  Identities=15%  Similarity=0.136  Sum_probs=157.4

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ...|.+++|+|++..+ ++++.|+     .+.+||..+++.+..+.+|.+.|.+++|+|++.+|++|+.|+.|++||+.+
T Consensus       139 ~~~v~~~~~~~~~~~l-~s~s~d~-----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          139 VSEITKLKFFPSGEAL-ISSSQDM-----QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTS-----EEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             cCccEEEEECCCCCEE-EEEeCCC-----eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence            3568899999998866 7777776     467778888999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEee---CCCCEEEEEE---------------------eeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCc
Q psy9319          84 LTCIRTFQR---LDWPVRAISF---------------------SHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAA  137 (432)
Q Consensus        84 ~~~~~~~~~---h~~~V~~i~~---------------------spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~  137 (432)
                      +.++..+..   |...|.+++|                     +|++.+|++|+.||.|++||+.++..+..+.  |...
T Consensus       213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            999888875   3445555554                     6889999999999999999999999888775  6788


Q ss_pred             eEEEEEccCCc-EEEEEECCCeEEEEeCCceEEeecCCCce-eeeecCCCchhhhHHhhhcccccccccCccccccccce
Q psy9319         138 TFTVAWHPKQY-LLAYACDDKYDRKQDCGNLKVFGFLPEPI-KKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLL  215 (432)
Q Consensus       138 V~~l~fspdg~-~l~s~s~d~~I~vwd~~~i~vwd~~~~~~-~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glL  215 (432)
                      |.+++|+|++. +|++|+.|+.        |++||+.++.. +..+.++........           ..|.+..   ++
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~--------i~vwd~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~---l~  350 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGM--------LAQWDLRSPECPVGEFLINEGTPINNV-----------YFAAGAL---FV  350 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSE--------EEEEETTCTTSCSEEEEESTTSCEEEE-----------EEETTEE---EE
T ss_pred             ceeEEEeCCCCCEEEEEeCCCe--------EEEEEcCCCcCchhhhhccCCCCceEE-----------EeCCCCE---EE
Confidence            99999999998 9999999999        66666665432 444444321111100           0122223   78


Q ss_pred             eccCcceeecccchh
Q psy9319         216 EKKKDYRVRADHFNK  230 (432)
Q Consensus       216 e~~~D~~lR~~d~~~  230 (432)
                      .+..|..+++|+...
T Consensus       351 s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          351 SSGFDTSIKLDIISD  365 (420)
T ss_dssp             EETTTEEEEEEEECC
T ss_pred             EecCCccEEEEeccC
Confidence            899999999999866

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=2.4e-22  Score=196.27  Aligned_cols=155  Identities=16%  Similarity=0.131  Sum_probs=132.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce----eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE----EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ..|.++.|+|++..+ ++++.|+.+..|++.     .+.    ......+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus        97 ~~v~~~~~~~~~~~l-~~~~~d~~v~i~d~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  170 (372)
T 1k8k_C           97 RAARCVRWAPNEKKF-AVGSGSRVISICYFE-----QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS  170 (372)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSSEEEEEEE-----TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CceeEEEECCCCCEE-EEEeCCCEEEEEEec-----CCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence            457899999999876 777788877666654     333    2233467899999999999999999999999999999


Q ss_pred             C------------------CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEE
Q psy9319          81 A------------------AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTV  141 (432)
Q Consensus        81 ~------------------~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l  141 (432)
                      +                  ..+.++..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++++..+. +...|.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~  250 (372)
T 1k8k_C          171 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV  250 (372)
T ss_dssp             CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred             cccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence            5                  4678888898999999999999999999999999999999999999998887 77789999


Q ss_pred             EEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         142 AWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       142 ~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      +|+|++.++++| .|+.|++|++..
T Consensus       251 ~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          251 TFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999988877 899966666544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.88  E-value=1.5e-21  Score=191.91  Aligned_cols=156  Identities=18%  Similarity=0.269  Sum_probs=140.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd~~   82 (432)
                      +.|.++.|+|++..+ ++++.|++     +++||..+++++..+.+|...|.+++|+|  +|.+|++|+.|++|++||+.
T Consensus       155 ~~v~~~~~~~~~~~l-~t~s~D~~-----v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          155 NYLSACSFTNSDMQI-LTASGDGT-----CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTSE-----EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             CcEEEEEEeCCCCEE-EEEeCCCc-----EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            457889999998876 67777764     56777889999999999999999999988  57899999999999999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec---CCceEEEEEccCCcEEEEEECCCeE
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI---QAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~---~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      ++.++..+.+|...|++++|+|++.+|++|+.|++|++||++++..+..+..   ...+.+++|+|+|.+|++|+.|+.|
T Consensus       229 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i  308 (354)
T 2pbi_B          229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI  308 (354)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcE
Confidence            9999999999999999999999999999999999999999999988777652   3468999999999999999999999


Q ss_pred             EEEeCCc
Q psy9319         160 RKQDCGN  166 (432)
Q Consensus       160 ~vwd~~~  166 (432)
                      ++||+..
T Consensus       309 ~vwd~~~  315 (354)
T 2pbi_B          309 NVWDVLK  315 (354)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9999854

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.88  E-value=2.2e-21  Score=219.62  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=143.0

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+.|.+++|+|++..+ ++++.|+.     +.+||..+++.+..+.+|.+.|++++|+|+|.+|++|+.|++|++||+.+
T Consensus       615 ~~~v~~~~~s~~~~~l-~s~~~d~~-----i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRI-ASCGADKT-----LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTSC-----EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccEEEEEECCCCCEE-EEEeCCCe-----EEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            3568899999999877 77777765     56777889999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEee--CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSH--DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      +.++..+.+|...|.+++|+|  ++.++++|+.|+.|++||+.++.++..+. |...|.+++|+|++.++++++.|+.|+
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~  768 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR  768 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence            999999999999999999999  56689999999999999999999988876 889999999999999999999999988


Q ss_pred             EEeCC
Q psy9319         161 KQDCG  165 (432)
Q Consensus       161 vwd~~  165 (432)
                      +||+.
T Consensus       769 vwd~~  773 (1249)
T 3sfz_A          769 LWDVR  773 (1249)
T ss_dssp             EEEGG
T ss_pred             EEeCC
Confidence            88763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.5e-21  Score=187.98  Aligned_cols=201  Identities=13%  Similarity=0.173  Sum_probs=158.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC--CCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT--GKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd--g~~L~sgs~dg~I~iwd~~   82 (432)
                      +.|.+++|+|++..+ ++++.|+.+.+|++.   ..++..+..+.+|.+.|++++|+|+  +.+|++|+.||.|++||+.
T Consensus        12 ~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   87 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRL-ATCSSDKTIKIFEVE---GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   87 (379)
T ss_dssp             CCEEEEEECSSSSEE-EEEETTSCEEEEEEE---TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred             ccEEEEEEcCCCCEE-EEEECCCcEEEEecC---CCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence            468999999999876 777888877666654   1256778889999999999999987  9999999999999999999


Q ss_pred             CCe--eEEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcE--EEEE-ecCCceEEEEEcc----------
Q psy9319          83 ELT--CIRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKK--VYDI-CIQAATFTVAWHP----------  145 (432)
Q Consensus        83 ~~~--~~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~--~~~~-~~~~~V~~l~fsp----------  145 (432)
                      ++.  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||+.++..  ...+ .|...|.+++|+|          
T Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (379)
T 3jrp_A           88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  167 (379)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--------
T ss_pred             CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccccc
Confidence            887  67788889999999999999  99999999999999999988743  2233 4888999999999          


Q ss_pred             ---CCcEEEEEECCCeEEEEeCCceEEeecCCCc----eeeeecCCCchhhhHHhhhcccccccccCcc---ccccccce
Q psy9319         146 ---KQYLLAYACDDKYDRKQDCGNLKVFGFLPEP----IKKRKRGGTMSSWVKAAKVNQKTHRERHQPE---DRRKLGLL  215 (432)
Q Consensus       146 ---dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~----~~~~~~g~~mss~~~a~~~~~~~h~er~qp~---~r~~~glL  215 (432)
                         ++.++++++.|+.        |++||+.++.    ++..+.+|....           ......|.   +..   ++
T Consensus       168 ~~~~~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~~~~~~h~~~v-----------~~~~~sp~~~~~~~---l~  225 (379)
T 3jrp_A          168 GTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSDWV-----------RDVAWSPTVLLRSY---LA  225 (379)
T ss_dssp             --CTTCEEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSSCE-----------EEEEECCCCSSSEE---EE
T ss_pred             CCCCCCEEEEEeCCCe--------EEEEEecCCCcceeeEEEEecccCcE-----------eEEEECCCCCCCCe---EE
Confidence               6999999999999        5555554432    333444443211           11122344   334   78


Q ss_pred             eccCcceeecccchhH
Q psy9319         216 EKKKDYRVRADHFNKK  231 (432)
Q Consensus       216 e~~~D~~lR~~d~~~k  231 (432)
                      .+..|..+++||....
T Consensus       226 s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          226 SVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEETTSCEEEEEESST
T ss_pred             EEeCCCEEEEEeCCCC
Confidence            8899999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=1.1e-21  Score=193.71  Aligned_cols=153  Identities=8%  Similarity=-0.038  Sum_probs=127.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE--EEccCCcCEEEEEEcCCCCEEEEEeCCC----eEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN--ILKAHPVTCICIEFDPTGKYFAVGSKDA----LVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~--~l~~h~~~V~~l~~spdg~~L~sgs~dg----~I~i   78 (432)
                      ..|.+++|+|++.++ ++++.|.      +.+|+..++..+.  ...+|...|.+++|+|+|.++++++.|+    .+++
T Consensus       177 ~~V~~v~fspdg~~l-~s~s~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          177 GEVKDLHFSTDGKVV-AYITGSS------LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             SCCCEEEECTTSSEE-EEECSSC------EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             CceEEEEEccCCceE-Eecccee------EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            458899999999877 6665442      3455556666543  3457889999999999999999999887    6888


Q ss_pred             EeCCCCee----EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEE
Q psy9319          79 WDAAELTC----IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        79 wd~~~~~~----~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s  152 (432)
                      |++..+..    ...+.+|...|++++|||||++||+|+.|++|+|||+.+++++..+.  |...|++++|+|||.+|++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence            99876543    35677899999999999999999999999999999999999998863  8999999999999999999


Q ss_pred             EECCCeEEEEeC
Q psy9319         153 ACDDKYDRKQDC  164 (432)
Q Consensus       153 ~s~d~~I~vwd~  164 (432)
                      ||.|++|+|||+
T Consensus       330 ~S~D~tvrvw~i  341 (365)
T 4h5i_A          330 VSAANTIHIIKL  341 (365)
T ss_dssp             EETTSEEEEEEC
T ss_pred             EeCCCeEEEEEc
Confidence            999999555554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.8e-21  Score=192.84  Aligned_cols=183  Identities=13%  Similarity=0.066  Sum_probs=142.6

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs  113 (432)
                      +.+|+..++..+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.+++|+|++ ++++++
T Consensus       229 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~  307 (425)
T 1r5m_A          229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS  307 (425)
T ss_dssp             EEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE
T ss_pred             EEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe
Confidence            4566666777778888999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             CCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceE------------EeecCCCceeee
Q psy9319         114 EDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLK------------VFGFLPEPIKKR  180 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~------------vwd~~~~~~~~~  180 (432)
                      .|+.|++||+.++..+..+. +...|.+++|+|++.+|++++.|+.|++||+....            ++.......+..
T Consensus       308 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (425)
T 1r5m_A          308 MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS  387 (425)
T ss_dssp             TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE
T ss_pred             CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh
Confidence            99999999999999888886 78899999999999999999999995555553211            000000114555


Q ss_pred             ecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         181 KRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       181 ~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                      +.+|....         ........|.++.   ++.+..|..+++|++.
T Consensus       388 ~~~~~~~~---------~v~~~~~s~~~~~---l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          388 YQSSQDND---------YIFDLSWNCAGNK---ISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ECCTTCCC---------CEEEEEECTTSSE---EEEEESSSCCEEEECC
T ss_pred             hcCcccCC---------ceEEEEccCCCce---EEEEecCceEEEEeec
Confidence            55542210         0111122344444   7788999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.88  E-value=2.3e-21  Score=185.45  Aligned_cols=197  Identities=15%  Similarity=0.043  Sum_probs=147.4

Q ss_pred             CcccccccCCC--CcceeeeeeecCCCceeEEEEeecCcc--eeeEEEccCCcCEEEEEEcCC--CCEEEEEeCCCeEEE
Q psy9319           5 NFIPLLGLNPR--PSLYQSSVLTDISPKQLDFKFKEHHKL--EEQNILKAHPVTCICIEFDPT--GKYFAVGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~--~~~l~~s~s~D~~~~~~~i~~~d~~~~--~~~~~l~~h~~~V~~l~~spd--g~~L~sgs~dg~I~i   78 (432)
                      ..|.+++|+|.  +. ++++++.|+++.+     ||..++  ..+..+.+|...|.+++|+|+  |.+|++|+.|++|++
T Consensus        54 ~~V~~v~~s~~~~g~-~l~s~s~D~~v~i-----Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~  127 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGT-ILASCSYDGKVMI-----WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV  127 (297)
T ss_dssp             SCEEEEEECCGGGCS-EEEEEETTTEEEE-----EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             CCeEEEEecCCCcCC-EEEEEcCCCEEEE-----EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence            45788999864  44 4588888887654     555555  356778899999999999997  899999999999999


Q ss_pred             EeCCCCe--eEEEEeeCCCCEEEEEEeeC-------------CCEEEEEeCCCeEEEEeCCCCc----EEEEEe-cCCce
Q psy9319          79 WDAAELT--CIRTFQRLDWPVRAISFSHD-------------GALIASGSEDLTIDIAHVESGK----KVYDIC-IQAAT  138 (432)
Q Consensus        79 wd~~~~~--~~~~~~~h~~~V~~i~~spd-------------g~~l~sgs~dg~V~vwd~~~~~----~~~~~~-~~~~V  138 (432)
                      ||+.++.  ....+.+|...|.+++|+|+             +.+|++|+.|++|++||+.++.    ....+. |...|
T Consensus       128 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V  207 (297)
T 2pm7_B          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (297)
T ss_dssp             EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence            9998653  24677889999999999997             5799999999999999998876    444554 88899


Q ss_pred             EEEEEccCC---cEEEEEECCCeEEEEeCCceEEeecCCCc--ee-eee--cCCCchhhhHHhhhcccccccccCccccc
Q psy9319         139 FTVAWHPKQ---YLLAYACDDKYDRKQDCGNLKVFGFLPEP--IK-KRK--RGGTMSSWVKAAKVNQKTHRERHQPEDRR  210 (432)
Q Consensus       139 ~~l~fspdg---~~l~s~s~d~~I~vwd~~~i~vwd~~~~~--~~-~~~--~g~~mss~~~a~~~~~~~h~er~qp~~r~  210 (432)
                      .+++|+|++   .+|++++.|++|++||        +.++.  .. ..+  .++..           ........|.+..
T Consensus       208 ~~v~~sp~~~~~~~las~s~D~~v~iWd--------~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~  268 (297)
T 2pm7_B          208 RDVAWSPTVLLRSYMASVSQDRTCIIWT--------QDNEQGPWKKTLLKEEKFPD-----------VLWRASWSLSGNV  268 (297)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEE--------ESSTTSCCEEEESSSSCCSS-----------CEEEEEECSSSCC
T ss_pred             EEEEECCCCCCceEEEEEECCCcEEEEE--------eCCCCCccceeeeecccCCC-----------cEEEEEECCCCCE
Confidence            999999985   8999999999955554        44321  11 111  11110           1111223355544


Q ss_pred             cccceeccCcceeecccch
Q psy9319         211 KLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       211 ~~glLe~~~D~~lR~~d~~  229 (432)
                         +..+..|..+|+|+..
T Consensus       269 ---las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          269 ---LALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ---EEEEETTSCEEEEEEC
T ss_pred             ---EEEEcCCCcEEEEEEC
Confidence               7788999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.88  E-value=4.3e-22  Score=200.88  Aligned_cols=198  Identities=12%  Similarity=0.062  Sum_probs=146.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~   81 (432)
                      ..|.+++|+|....++++|+.|+++.     +||..++..  ...+.+|.+.|++++|+| ++.+|++|+.||+|++||+
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~-----lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIM-----LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEE-----EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEE-----EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            45899999997776679999888765     455545443  445568999999999998 7899999999999999999


Q ss_pred             CCCeeEEEEeeC--CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCc-EEEEEECCC
Q psy9319          82 AELTCIRTFQRL--DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQY-LLAYACDDK  157 (432)
Q Consensus        82 ~~~~~~~~~~~h--~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~-~l~s~s~d~  157 (432)
                      .++........+  ...+.+++|+|++.+|++|+.||.|++||+... .+..+. |...|.+++|+|++. ++++|+.|+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence            876543333333  345789999999999999999999999999654 444444 889999999999885 788999999


Q ss_pred             eEEEEeCCceEEeecCCCceeeee---cCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKKRK---RGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~~~---~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      .        |++||+.++.....+   .+|...           .......|.+..   ++.+..|..|++||...
T Consensus       274 ~--------v~iwd~~~~~~~~~~~~~~~h~~~-----------v~~~~~spdg~~---l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          274 T--------VKIWDLRQVRGKASFLYSLPHRHP-----------VNAACFSPDGAR---LLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             B--------CCEEETTTCCSSSCCSBCCBCSSC-----------EEECCBCTTSSE---EEEEESSSCEEEEESSS
T ss_pred             e--------eeEEecccccccceEEEeeecccc-----------ccceeECCCCCe---eEEEcCCCEEEEEECCC
Confidence            9        555555544322221   222211           111222355555   88999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=4.7e-21  Score=187.05  Aligned_cols=208  Identities=17%  Similarity=0.171  Sum_probs=158.5

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      .+.|.+++|+|++..+ ++++.|+.     +.+|+..+++  .+..+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus         8 ~~~i~~~~~s~~~~~l-~~~~~d~~-----v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQI-AICPNNHE-----VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             SSCCCEEEECTTSSEE-EEECSSSE-----EEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEE-EEEeCCCE-----EEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            4568999999999877 66666655     4555555666  88899999999999999999999999999999999999


Q ss_pred             CCCeeEEE--EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE---EEEE--ecCCceEEEEEccCCcEEEEEE
Q psy9319          82 AELTCIRT--FQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK---VYDI--CIQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        82 ~~~~~~~~--~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~---~~~~--~~~~~V~~l~fspdg~~l~s~s  154 (432)
                      .++.....  +..|...|.+++|+|++.+|++++.|+.|++||+..+..   ...+  .|...|.+++|+|++.+|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            88875444  367889999999999999999999999999999988773   2333  2678899999999999999999


Q ss_pred             CCCeEEEEeCCce--------EEee--cCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceee
Q psy9319         155 DDKYDRKQDCGNL--------KVFG--FLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVR  224 (432)
Q Consensus       155 ~d~~I~vwd~~~i--------~vwd--~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR  224 (432)
                      .|+.|++||+...        ..|.  ...+..+..+.+|...           .......|.+..   ++.+..|..++
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~---l~~~~~d~~i~  227 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-----------VHGVCFSANGSR---VAWVSHDSTVC  227 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-----------EEEEEECSSSSE---EEEEETTTEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-----------EEEEEECCCCCE---EEEEeCCCEEE
Confidence            9999666664210        0111  2345555555544321           111122344444   78888999999


Q ss_pred             cccchhH
Q psy9319         225 ADHFNKK  231 (432)
Q Consensus       225 ~~d~~~k  231 (432)
                      +||....
T Consensus       228 i~d~~~~  234 (372)
T 1k8k_C          228 LADADKK  234 (372)
T ss_dssp             EEEGGGT
T ss_pred             EEECCCC
Confidence            9999764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2e-21  Score=189.56  Aligned_cols=204  Identities=13%  Similarity=0.068  Sum_probs=153.1

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeE----EEEeecCcceeeEEEc-cCCcCEEEEEEcC--CCCEEEEEeCCCeEEE
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLD----FKFKEHHKLEEQNILK-AHPVTCICIEFDP--TGKYFAVGSKDALVSL   78 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~----i~~~d~~~~~~~~~l~-~h~~~V~~l~~sp--dg~~L~sgs~dg~I~i   78 (432)
                      .|.++.++|.    +++++.|+++..|+    +.+|+..+++.+..+. +|.++|.+++|+|  ++.+|++|+.|++|++
T Consensus        78 ~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           78 NPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             CCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            4567788887    58889999888884    4567777777666655 7888999999999  9999999999999999


Q ss_pred             EeCCCCeeEEEEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE-EEEe--cCCceEEEEEccCCcEEEEEE
Q psy9319          79 WDAAELTCIRTFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV-YDIC--IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        79 wd~~~~~~~~~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~-~~~~--~~~~V~~l~fspdg~~l~s~s  154 (432)
                      ||+.++.+...+.. |...|.+++|+|+|.+|++|+.||.|++||++++..+ ..+.  |.++|.+++|+|+|.+|++++
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            99999988766643 4558999999999999999999999999999999877 5554  789999999999999999999


Q ss_pred             CCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccC-cceeecccchhH
Q psy9319         155 DDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKK-DYRVRADHFNKK  231 (432)
Q Consensus       155 ~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~-D~~lR~~d~~~k  231 (432)
                       ++.        |++||+.++..+..+...........      .......|.+..   ++.+.. |..+++|++...
T Consensus       234 -~~~--------v~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~---l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          234 -DQT--------VVCFDLRKDVGTLAYPTYTIPEFKTG------TVTYDIDDSGKN---MIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -SSB--------EEEEETTSSTTCBSSCCCBC-----C------CEEEEECTTSSE---EEEEETTTTEEEEEEECTT
T ss_pred             -CCe--------EEEEEcCCCCcceeeccccccccccc------ceEEEECCCCCE---EEEecCCCCcEEEEEEccc
Confidence             448        56666665554433332110000000      001222355554   666666 899999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.87  E-value=9e-22  Score=191.21  Aligned_cols=153  Identities=13%  Similarity=0.057  Sum_probs=129.2

Q ss_pred             CcccccccCCCCc---ceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPS---LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~---~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd   80 (432)
                      ..|.+++|+|++.   .++++++.|+     .+.+||..+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRG-----IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTC-----EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCC-----EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            5578999999843   2447777665     567788889999999999999999999999 999999999999999999


Q ss_pred             CCCCeeEEEE---eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe------------------------
Q psy9319          81 AAELTCIRTF---QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC------------------------  133 (432)
Q Consensus        81 ~~~~~~~~~~---~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~------------------------  133 (432)
                      +.++..+..+   .+|...|.+++|+|++.+|++++.||.|++||+.++..+..+.                        
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            9999998888   6899999999999999999999999999999998764432211                        


Q ss_pred             -----cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         134 -----IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       134 -----~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                           |...|.+++|+  +.++++++.|+.|++||+
T Consensus       225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence                 66778888887  668888888888777775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.87  E-value=9.4e-21  Score=188.74  Aligned_cols=208  Identities=16%  Similarity=0.226  Sum_probs=161.8

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeE-----------------------------------EEEeecC-cceeeEE
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLD-----------------------------------FKFKEHH-KLEEQNI   47 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~-----------------------------------i~~~d~~-~~~~~~~   47 (432)
                      ...|.+++|+|++..+ ++++.|+.+..|+                                   +.+||.. ....+..
T Consensus       134 ~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          134 STYVASVKWSHDGSFL-SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             TCCEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCEEEEEECCCCCEE-EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeE
Confidence            3567888888888766 6677777776665                                   3466666 4566778


Q ss_pred             EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCC-CEEEEEe--CCCeEEEEeCC
Q psy9319          48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG-ALIASGS--EDLTIDIAHVE  124 (432)
Q Consensus        48 l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg-~~l~sgs--~dg~V~vwd~~  124 (432)
                      +.+|.+.|.+++|+|++.+|++|+.|+.|++||+.++.++..+.+|...|.+++|+|++ .++++|+  .|+.|++||+.
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence            88999999999999999999999999999999999999999999999999999999966 5666665  69999999999


Q ss_pred             CCcEEEEEecCCceEEEEEccCCcEEEEEE--CCCeEEEEeCCceEEeecCCCceeee--ecCCCchhhhHHhhhccccc
Q psy9319         125 SGKKVYDICIQAATFTVAWHPKQYLLAYAC--DDKYDRKQDCGNLKVFGFLPEPIKKR--KRGGTMSSWVKAAKVNQKTH  200 (432)
Q Consensus       125 ~~~~~~~~~~~~~V~~l~fspdg~~l~s~s--~d~~I~vwd~~~i~vwd~~~~~~~~~--~~g~~mss~~~a~~~~~~~h  200 (432)
                      ++.++..+.+...|.+++|+|++.++++++  .|+.        +++|++.++.....  +.+|...           ..
T Consensus       293 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~--------i~v~~~~~~~~~~~~~~~~h~~~-----------v~  353 (401)
T 4aez_A          293 TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN--------LSIWSYSSSGLTKQVDIPAHDTR-----------VL  353 (401)
T ss_dssp             TCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE--------EEEEEEETTEEEEEEEEECCSSC-----------CC
T ss_pred             CCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc--------EEEEecCCccceeEEEecCCCCC-----------EE
Confidence            999999999889999999999999999954  7999        55566555443332  3344321           11


Q ss_pred             ccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         201 RERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       201 ~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                      .....|.+..   ++.+..|..+++|+....+..
T Consensus       354 ~~~~s~dg~~---l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          354 YSALSPDGRI---LSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EEEECTTSSE---EEEECTTSEEEEEECCC----
T ss_pred             EEEECCCCCE---EEEEeCCCcEEEEECCCCccc
Confidence            1122344444   788999999999999876554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.87  E-value=3e-20  Score=177.29  Aligned_cols=148  Identities=18%  Similarity=0.250  Sum_probs=125.9

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc--cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK--AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +++++|||++ ++ +++ .|+     .|++||..+++++..+.  +|...|++++|+|+|++|++|+.|++|++||+.++
T Consensus        28 ~~~l~WS~~~-~l-Avg-~D~-----tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VL-AVA-LDN-----SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EE-EEE-ETT-----EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EE-EEE-eCC-----EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence            5789999876 33 443 455     46778888998887765  67788999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE-EEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK-VYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~-~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      +++..+.+|...+.++  ++++..+++|+.++.+.+|+...+.. +..+. |...+..+.|++++.++++++.|+.|++|
T Consensus       100 ~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  177 (318)
T ss_dssp             EEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence            9999999999888765  45677999999999999999987644 34443 88889999999999999999999999999


Q ss_pred             eC
Q psy9319         163 DC  164 (432)
Q Consensus       163 d~  164 (432)
                      |+
T Consensus       178 d~  179 (318)
T 4ggc_A          178 PS  179 (318)
T ss_dssp             ES
T ss_pred             EC
Confidence            86

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.87  E-value=5.7e-22  Score=194.79  Aligned_cols=167  Identities=14%  Similarity=0.156  Sum_probs=134.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce---eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE---EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~---~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      +.|.+++|+|++..+ ++++.|+++..|++.     ++.   ....+.+|...|.+++|+|++.+|++|+.|+.|++||+
T Consensus        56 ~~v~~~~~s~~~~~l-~s~s~d~~v~vwd~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  129 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRI-VTCSQDRNAYVYEKR-----PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF  129 (377)
T ss_dssp             SCEEEEEECTTTCCE-EEEETTSSEEEC-----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred             ceEEEEEEeCCCCEE-EEEeCCCeEEEEEcC-----CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence            568899999998866 888888876655554     544   67788899999999999999999999999999999999


Q ss_pred             CCCe---eEEEEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC------------------CcEEEEEecCCceE
Q psy9319          82 AELT---CIRTFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVES------------------GKKVYDICIQAATF  139 (432)
Q Consensus        82 ~~~~---~~~~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~------------------~~~~~~~~~~~~V~  139 (432)
                      .++.   ....+.+ |...|.+++|+|++.+|++|+.|+.|++||+..                  +.++..+.|...|.
T Consensus       130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  209 (377)
T 3dwl_C          130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVH  209 (377)
T ss_dssp             -----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEE
T ss_pred             CCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEE
Confidence            9876   4677777 999999999999999999999999999999852                  44555556888899


Q ss_pred             EEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCce----eeeecCCC
Q psy9319         140 TVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPI----KKRKRGGT  185 (432)
Q Consensus       140 ~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~----~~~~~g~~  185 (432)
                      +++|+|+|.+|++++.|+.        |++||+.++..    +..+.+|.
T Consensus       210 ~~~~sp~~~~l~~~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~  251 (377)
T 3dwl_C          210 AVGFSPSGNALAYAGHDSS--------VTIAYPSAPEQPPRALITVKLSQ  251 (377)
T ss_dssp             EEEECTTSSCEEEEETTTE--------EC-CEECSTTSCEEECCCEECSS
T ss_pred             EEEECCCCCEEEEEeCCCc--------EEEEECCCCCCcceeeEeecCCC
Confidence            9999999999999999999        77777777665    55666654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.8e-22  Score=204.75  Aligned_cols=203  Identities=11%  Similarity=-0.036  Sum_probs=156.0

Q ss_pred             CcccccccCCCC-----cceeeeeeecCCCceeEEEEeecC------cceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC
Q psy9319           5 NFIPLLGLNPRP-----SLYQSSVLTDISPKQLDFKFKEHH------KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD   73 (432)
Q Consensus         5 n~I~~l~~~p~~-----~~l~~s~s~D~~~~~~~i~~~d~~------~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d   73 (432)
                      ..|..++|+|++     ..++++++.|+++++|++......      ...+...+.+|...|++++|+|++ .|++|+.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence            457889999972     235689999998877776421100      012345788999999999999864 89999999


Q ss_pred             CeEEEEeCCCCe-eEEEEeeCCCCEEEE--EEeeCC-CEEEEEeCCCeEEEEeCCCCcEEEEEe-cC--CceEEEEEccC
Q psy9319          74 ALVSLWDAAELT-CIRTFQRLDWPVRAI--SFSHDG-ALIASGSEDLTIDIAHVESGKKVYDIC-IQ--AATFTVAWHPK  146 (432)
Q Consensus        74 g~I~iwd~~~~~-~~~~~~~h~~~V~~i--~~spdg-~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~--~~V~~l~fspd  146 (432)
                      |+|++||+.++. +...+.+|...|+++  +|+|+| .+|+|||.|++|++||+++++++..+. |.  ..|.+++|+|+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence            999999998763 456788999999999  578887 899999999999999999887765553 33  35889999999


Q ss_pred             CcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecc
Q psy9319         147 QYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRAD  226 (432)
Q Consensus       147 g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~  226 (432)
                      +..+++++.|++        |++||+.++.++..+.+|......           ....|.+..   +++++.|.++|+|
T Consensus       367 ~~~l~s~~~d~t--------v~lwd~~~~~~~~~l~gH~~~V~s-----------va~Sp~g~~---l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          367 IYSYIYSDGASS--------LRAVPSRAAFAVHPLVSRETTITA-----------IGVSRLHPM---VLAGSADGSLIIT  424 (524)
T ss_dssp             TTEEEEECSSSE--------EEEEETTCTTCCEEEEECSSCEEE-----------EECCSSCCB---CEEEETTTEEECC
T ss_pred             cCeEEEeCCCCc--------EEEEECcccccceeeecCCCceEE-----------EEeCCCCCe---EEEEECCCEEEEE
Confidence            999999999999        677777777776777776533222           122455554   8899999999999


Q ss_pred             cchh
Q psy9319         227 HFNK  230 (432)
Q Consensus       227 d~~~  230 (432)
                      |...
T Consensus       425 d~~~  428 (524)
T 2j04_B          425 NAAR  428 (524)
T ss_dssp             BSCS
T ss_pred             echH
Confidence            8744

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.87  E-value=8.9e-21  Score=187.00  Aligned_cols=198  Identities=12%  Similarity=0.145  Sum_probs=153.1

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc--cCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK--AHPVTCICIEFDP-TGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~--~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd   80 (432)
                      ...|.+++|+|++..++++++.|+.+     .+||..++.....+.  +|...|.+++|+| ++.+|++++.|+.|++||
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i-----~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDI-----ILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCE-----EEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeE-----EEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            35689999999994455888888765     566666777776665  6999999999999 789999999999999999


Q ss_pred             CCCCeeEEEEeeC---CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCc-EEEEEEC
Q psy9319          81 AAELTCIRTFQRL---DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQY-LLAYACD  155 (432)
Q Consensus        81 ~~~~~~~~~~~~h---~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~-~l~s~s~  155 (432)
                      +.+ ..+..+..+   ...|.+++|+|++.+|++|+.|+.|++||+ ++.++..+. |...|.+++|+|++. +|++++.
T Consensus       148 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          148 FSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             TTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeC
Confidence            985 555666544   478999999999999999999999999999 566777776 889999999999998 9999999


Q ss_pred             CCeEEEEeCCceEEeecCC----CceeeeecCCCchhhhHHhhhcccccccccCc-cccccccceeccCcceeecccchh
Q psy9319         156 DKYDRKQDCGNLKVFGFLP----EPIKKRKRGGTMSSWVKAAKVNQKTHRERHQP-EDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~----~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp-~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      |+.|        ++||+.+    +.++..+ +|..           ........| .+..   ++.+..|..+++||...
T Consensus       226 d~~i--------~iwd~~~~~~~~~~~~~~-~~~~-----------~v~~~~~s~~~~~~---l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          226 DATV--------KLWDLRNIKDKNSYIAEM-PHEK-----------PVNAAYFNPTDSTK---LLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             TSEE--------EEEEGGGCCSTTCEEEEE-ECSS-----------CEEEEEECTTTSCE---EEEEESSSEEEEEETTB
T ss_pred             CCEE--------EEEeCCCCCcccceEEEe-cCCC-----------ceEEEEEcCCCCCE---EEEEcCCCcEEEEECCC
Confidence            9995        4555544    3444433 2221           111112234 4444   78888999999999865


Q ss_pred             H
Q psy9319         231 K  231 (432)
Q Consensus       231 k  231 (432)
                      .
T Consensus       283 ~  283 (383)
T 3ei3_B          283 W  283 (383)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.87  E-value=1.1e-21  Score=195.21  Aligned_cols=155  Identities=15%  Similarity=0.191  Sum_probs=133.9

Q ss_pred             CcccccccCC-CCcceeeeeeecCCCceeEEEEeecCcc-------eeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCe
Q psy9319           5 NFIPLLGLNP-RPSLYQSSVLTDISPKQLDFKFKEHHKL-------EEQNILKAHPVTCICIEFDPTG-KYFAVGSKDAL   75 (432)
Q Consensus         5 n~I~~l~~~p-~~~~l~~s~s~D~~~~~~~i~~~d~~~~-------~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~   75 (432)
                      ..|.+++|+| ++.++ ++++.|+++     .+|+..++       .++..+.+|...|.+++|+|++ .+|++|+.|+.
T Consensus        82 ~~V~~~~~~p~~~~~l-~s~s~dg~v-----~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVI-ASGSEDCTV-----MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             SCEEEEEECTTCTTEE-EEEETTSEE-----EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             CCEEEEEeCCCCCCEE-EEEeCCCeE-----EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            4578999999 56554 888878655     55555565       6688999999999999999998 69999999999


Q ss_pred             EEEEeCCCCeeEEEE--eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-e-cCCc-eEEEEEccCCcEE
Q psy9319          76 VSLWDAAELTCIRTF--QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-C-IQAA-TFTVAWHPKQYLL  150 (432)
Q Consensus        76 I~iwd~~~~~~~~~~--~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~-~~~~-V~~l~fspdg~~l  150 (432)
                      |++||+.++.++..+  .+|...|.+++|+|++.+|++++.|+.|++||++++..+..+ . |.+. +.+++|+|++.+|
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL  235 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence            999999999999999  789999999999999999999999999999999999998887 3 5554 8999999999999


Q ss_pred             EEE---ECCCeEEEEeCC
Q psy9319         151 AYA---CDDKYDRKQDCG  165 (432)
Q Consensus       151 ~s~---s~d~~I~vwd~~  165 (432)
                      ++|   +.|+.|++||+.
T Consensus       236 ~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             EEEECTTCCEEEEEEETT
T ss_pred             EEeccCCCCceEEEEcCc
Confidence            999   689995555543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.87  E-value=1.5e-20  Score=185.38  Aligned_cols=211  Identities=15%  Similarity=0.138  Sum_probs=168.8

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC---CCEEEEEeCCCeEEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT---GKYFAVGSKDALVSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~sgs~dg~I~iwd   80 (432)
                      ...|.++.|+|++..++++++.|+     .+.+||..++.....+. +...+.++.|+|.   +.++++|+.|+.|++||
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSSSFDK-----TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEEETTS-----EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             CCcEEEEEEccCCCcEEEEEeCCC-----eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            356899999995555557777776     45677777888887776 6788999999984   45999999999999999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCCCc-EEEEE----------------ecCCceEEEE
Q psy9319          81 AAELTCIRTFQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVESGK-KVYDI----------------CIQAATFTVA  142 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~~~-~~~~~----------------~~~~~V~~l~  142 (432)
                      +.++..+..+.+|...|.+++|+|++. +|++|+.||.|++||++++. ++..+                .|...|.+++
T Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence            999999999999999999999999988 58999999999999998765 33333                3677899999


Q ss_pred             EccCCcEEEEEECCCeEEEEeCCc---------------------------------------eEEeecCCCceeeeecC
Q psy9319         143 WHPKQYLLAYACDDKYDRKQDCGN---------------------------------------LKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       143 fspdg~~l~s~s~d~~I~vwd~~~---------------------------------------i~vwd~~~~~~~~~~~g  183 (432)
                      |+|++.+|++++.|+.|++||+..                                       +.+||+.++..+..+.+
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  332 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG  332 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence            999999999999999999999743                                       77889888888888877


Q ss_pred             CCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         184 GTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       184 ~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                      |......           ....|.+..   ++.+..|..+++||....+..
T Consensus       333 ~~~~v~~-----------~~~s~~~~~---l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          333 HYKTVDC-----------CVFQSNFQE---LYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             CSSCEEE-----------EEEETTTTE---EEEEETTSCEEEEEECC----
T ss_pred             CCCeEEE-----------EEEcCCCCE---EEEECCCCeEEEEeCCCCCcc
Confidence            7532111           112244444   788999999999999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.87  E-value=1.3e-20  Score=195.58  Aligned_cols=193  Identities=22%  Similarity=0.285  Sum_probs=159.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..+ ++++.|+.     +.+|+. +++.+..+.+|...|.+++|+|+|++|++++.|+.|++||. ++
T Consensus       345 ~~v~~~~~s~~g~~l-~~~~~dg~-----v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~  416 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTI-ASASDDKT-----VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  416 (577)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSE-----EEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TC
T ss_pred             CCEEEEEECCCCCEE-EEEeCCCE-----EEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence            457889999999877 67776664     456663 67888899999999999999999999999999999999996 46


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ..+..+.+|...|++++|+|++.+|++++.|+.|++||. +++.+..+. |...|.+++|+|++.+|++++.|+.     
T Consensus       417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-----  490 (577)
T 2ymu_A          417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-----  490 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-----
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-----
Confidence            788899999999999999999999999999999999996 556666665 8899999999999999999999999     


Q ss_pred             CCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccch
Q psy9319         164 CGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       164 ~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~  229 (432)
                         |++|+. ++.++..+.+|.....           .....|.++.   ++.+..|..+|+||+.
T Consensus       491 ---i~iw~~-~~~~~~~~~~h~~~v~-----------~l~~s~dg~~---l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          491 ---VKLWNR-NGQLLQTLTGHSSSVR-----------GVAFSPDGQT---IASASDDKTVKLWNRN  538 (577)
T ss_dssp             ---EEEEET-TSCEEEEEECCSSCEE-----------EEEECTTSSC---EEEEETTSEEEEECTT
T ss_pred             ---EEEEcC-CCCEEEEEeCCCCCEE-----------EEEEcCCCCE---EEEEECcCEEEEEeCC
Confidence               556663 4677777777753211           1222455555   7889999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=6.7e-21  Score=188.02  Aligned_cols=169  Identities=14%  Similarity=0.134  Sum_probs=138.9

Q ss_pred             CcccccccC----CCCcceeeeeeecCCCceeEEEEeec-CcceeeE-----EE-------ccCCcCEEEEEEcCCCCEE
Q psy9319           5 NFIPLLGLN----PRPSLYQSSVLTDISPKQLDFKFKEH-HKLEEQN-----IL-------KAHPVTCICIEFDPTGKYF   67 (432)
Q Consensus         5 n~I~~l~~~----p~~~~l~~s~s~D~~~~~~~i~~~d~-~~~~~~~-----~l-------~~h~~~V~~l~~spdg~~L   67 (432)
                      ..|.++.|+    |++..++++++.|+.+..|++..... ..+..+.     .+       ..|...|.+++|+|++ +|
T Consensus       122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  200 (397)
T 1sq9_A          122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI  200 (397)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred             CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence            678999999    99987247888888776666652000 0044444     66       4589999999999999 99


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEEee---C---CCCEEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCcEEEEEe-----
Q psy9319          68 AVGSKDALVSLWDAAELTCIRTFQR---L---DWPVRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDIC-----  133 (432)
Q Consensus        68 ~sgs~dg~I~iwd~~~~~~~~~~~~---h---~~~V~~i~~spdg~~l~sgs~d---g~V~vwd~~~~~~~~~~~-----  133 (432)
                      ++|+.|+.|++||+.++..+..+..   |   ...|.+++|+|++.+|++++.|   +.|++||+.+++++..+.     
T Consensus       201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~  280 (397)
T 1sq9_A          201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS  280 (397)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence            9999999999999999999999998   8   9999999999999999999999   999999999999888875     


Q ss_pred             ---------cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         134 ---------IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       134 ---------~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                               |...|.+++|+|++.+|++++.|+.        |++||+.++..+..+.
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK--------LRFWDVKTKERITTLN  330 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETTSE--------EEEEETTTTEEEEEEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEeCCCe--------EEEEEcCCCceeEEEe
Confidence                     6788999999999999999999999        6666666677766666

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=9.7e-21  Score=183.33  Aligned_cols=199  Identities=11%  Similarity=0.028  Sum_probs=143.0

Q ss_pred             cccccccCCC----Ccceeeeeeec---------------CCCceeEEEEeec-CcceeeEEEccCCcCEEEEEEcC---
Q psy9319           6 FIPLLGLNPR----PSLYQSSVLTD---------------ISPKQLDFKFKEH-HKLEEQNILKAHPVTCICIEFDP---   62 (432)
Q Consensus         6 ~I~~l~~~p~----~~~l~~s~s~D---------------~~~~~~~i~~~d~-~~~~~~~~l~~h~~~V~~l~~sp---   62 (432)
                      .|..++++|+    +..++. ++.+               .+.....|++|+. .+++.+..+.+|...++.++|+|   
T Consensus       113 ~v~sla~spd~~~~~~~l~s-~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLK-SGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEECC------CCEEEEE-EEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             ceEEEEECCCccccccEEEe-CCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence            4678888888    655533 3321               1112445556665 44777777778888888888888   


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCC---CCEEEEEEeeCCCEE------------EEEeCCCeEEEEeCCCCc
Q psy9319          63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLD---WPVRAISFSHDGALI------------ASGSEDLTIDIAHVESGK  127 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~---~~V~~i~~spdg~~l------------~sgs~dg~V~vwd~~~~~  127 (432)
                      ++.+|++|+.|++|+|||+.+|+++.++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..++.
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            66889999999999999999999999998754   367788999999876            567889999999999998


Q ss_pred             EEEEEe------cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccc
Q psy9319         128 KVYDIC------IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHR  201 (432)
Q Consensus       128 ~~~~~~------~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~  201 (432)
                      ++..+.      |...+.+.  +.++.++++++.|++        |++||+.+|+++..+.+|....+..          
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgT--------IkIWDl~tGk~l~tL~gH~~~vvs~----------  331 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGT--------IAIWDLLLGQCTALLPPVSDQHWSF----------  331 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSC--------EEEEETTTCSEEEEECCC--CCCCE----------
T ss_pred             EEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCc--------EEEEECCCCcEEEEecCCCCCeEEE----------
Confidence            877652      33334333  334889999999999        8889999999999998875432211          


Q ss_pred             cccCccccccccceeccCcceeecccc
Q psy9319         202 ERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       202 er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      ....|++..   +++++.|.+||+||+
T Consensus       332 vafSPDG~~---LaSGS~D~TIklWd~  355 (356)
T 2w18_A          332 VKWSGTDSH---LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECSSSSE---EEEECTTSCEEEEEE
T ss_pred             EEECCCCCE---EEEEECCCcEEEecC
Confidence            123466666   889999999999986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.86  E-value=4.2e-21  Score=192.55  Aligned_cols=209  Identities=14%  Similarity=0.188  Sum_probs=149.5

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce-----------eeEEEccCC------------cCEEEEE
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE-----------EQNILKAHP------------VTCICIE   59 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~-----------~~~~l~~h~------------~~V~~l~   59 (432)
                      ..+.|.+++|+|++.++ ++++.|+.+.+|++     .++.           ....+.+|.            +.|++++
T Consensus        27 ~~~~V~~v~~s~~g~~l-a~g~~dg~v~iw~~-----~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           27 EADIISTVEFNHSGELL-ATGDKGGRVVIFQQ-----EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             GGGSEEEEEECSSSSEE-EEEETTSEEEEEEE-----CC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             ccCcEEEEEECCCCCEE-EEEcCCCeEEEEEe-----cCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            34678999999999877 77788876655554     4444           577899998            8899999


Q ss_pred             EcCCC--CEEEEEeCCCeEEEEeCCCCeeE---------------------------------------EE-EeeCCCCE
Q psy9319          60 FDPTG--KYFAVGSKDALVSLWDAAELTCI---------------------------------------RT-FQRLDWPV   97 (432)
Q Consensus        60 ~spdg--~~L~sgs~dg~I~iwd~~~~~~~---------------------------------------~~-~~~h~~~V   97 (432)
                      |+|++  ..|++++.|++|++||+.++...                                       .. ..+|...|
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99998  79999999999999998764331                                       12 35799999


Q ss_pred             EEEEEeeCCCEEEEEeCCCeEEEEeCCC-CcEEEEE--------ecCCceEEEEEccCC-cEEEEEECCCeEEEEeCCce
Q psy9319          98 RAISFSHDGALIASGSEDLTIDIAHVES-GKKVYDI--------CIQAATFTVAWHPKQ-YLLAYACDDKYDRKQDCGNL  167 (432)
Q Consensus        98 ~~i~~spdg~~l~sgs~dg~V~vwd~~~-~~~~~~~--------~~~~~V~~l~fspdg-~~l~s~s~d~~I~vwd~~~i  167 (432)
                      .+++|+|++.+|++| .|+.|++||+.+ +.++..+        .|...|.+++|+|++ .+|++|+.|+.        |
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~--------i  251 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT--------I  251 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC--------E
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe--------E
Confidence            999999999999998 799999999984 4455433        378889999999998 99999999999        5


Q ss_pred             EEeecCCCce----eeeecCCCchhhhH-HhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         168 KVFGFLPEPI----KKRKRGGTMSSWVK-AAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       168 ~vwd~~~~~~----~~~~~g~~mss~~~-a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ++||+.++..    +..+.++....... ..............|.+..   ++.+.. ..+++||...
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~---l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY---MMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE---EEEEES-SEEEEEETTC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE---EEEeeC-CeEEEEeCCC
Confidence            5555555544    44555543210000 0000001222233444444   666666 9999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.86  E-value=2e-20  Score=179.55  Aligned_cols=198  Identities=13%  Similarity=0.043  Sum_probs=154.5

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce---eeEEEc--cCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE---EQNILK--AHPVTCICIEFDPTGKYFAVGSKDALVSL   78 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~---~~~~l~--~h~~~V~~l~~spdg~~L~sgs~dg~I~i   78 (432)
                      .+.|.++.|+|++..+ ++++ |+     .+.+|+..++.   .+..+.  +|...|.+++|+|++.+|++++.|+.|++
T Consensus        51 ~~~v~~~~~~~~~~~l-~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           51 GEVVCAVTISNPTRHV-YTGG-KG-----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             SSCCCEEEECSSSSEE-EEEC-BS-----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCceEEEEEecCCcEE-EEcC-CC-----eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            4568899999999877 5544 65     45667666554   333444  79999999999999999999999999999


Q ss_pred             EeCCCCe--eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEEC
Q psy9319          79 WDAAELT--CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        79 wd~~~~~--~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ||+.++.  ....+..|...|.+++|+|++.++++++.|+.|++||+.+++.+..+. |...|.+++|+|++.+|++++.
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  203 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence            9999877  567788899999999999999999999999999999999999888886 8889999999999999999999


Q ss_pred             CCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         156 DKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      |+.        +++||+.++..+..+....            ........|.+..   ++.+..|..+++||....
T Consensus       204 dg~--------i~~~d~~~~~~~~~~~~~~------------~v~~~~~s~~~~~---l~~~~~~~~i~~~~~~~~  256 (337)
T 1gxr_A          204 DNT--------VRSWDLREGRQLQQHDFTS------------QIFSLGYCPTGEW---LAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             TSE--------EEEEETTTTEEEEEEECSS------------CEEEEEECTTSSE---EEEEETTSCEEEEETTSS
T ss_pred             CCc--------EEEEECCCCceEeeecCCC------------ceEEEEECCCCCE---EEEEcCCCcEEEEECCCC
Confidence            999        5555555555544432110            0111112244444   677778899999988753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6e-21  Score=193.24  Aligned_cols=164  Identities=15%  Similarity=0.045  Sum_probs=140.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecC--cceeeEEEc--cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH--KLEEQNILK--AHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~--~~~~~~~l~--~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      .|.+++|+|++..++++++.|+++     .+|+..  ++..+..+.  +|...|++++|+|+|.+|++|+.+|.|++|++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v-----~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSL-----LVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEE-----EEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeE-----EEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            689999999999876888777665     555555  677777776  67789999999999999999999999999999


Q ss_pred             CCCeeEE----EEeeCCCCEEEEEEeeC---CCEEEEEeCCCeEEEEeCCCCcEEEEE--ecCCceEEEEEccCCcEEEE
Q psy9319          82 AELTCIR----TFQRLDWPVRAISFSHD---GALIASGSEDLTIDIAHVESGKKVYDI--CIQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        82 ~~~~~~~----~~~~h~~~V~~i~~spd---g~~l~sgs~dg~V~vwd~~~~~~~~~~--~~~~~V~~l~fspdg~~l~s  152 (432)
                      .++....    .+.+|...|++++|+|+   +.+|++|+.|+.|++||+.++.++..+  .|...|.+++|+ ++.+|++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            8776543    77889999999999999   999999999999999999999988774  388999999999 9999999


Q ss_pred             EECCCeEEEEeCCceEEeecCCCceeeeecC
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g  183 (432)
                      ++.|+.        |++||+.++.++..+..
T Consensus       258 ~~~d~~--------v~vwd~~~~~~~~~~~~  280 (450)
T 2vdu_B          258 AGGDDK--------IFAWDWKTGKNLSTFDY  280 (450)
T ss_dssp             EESSSE--------EEEEETTTCCEEEEEEC
T ss_pred             EeCCCe--------EEEEECCCCcEeeeecc
Confidence            999999        67777777777666643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.86  E-value=3.4e-20  Score=178.63  Aligned_cols=180  Identities=18%  Similarity=0.176  Sum_probs=142.1

Q ss_pred             ecCcceeeEEEccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC-----eeEEEEeeCCCCEEEEEEeeCCCEEEE
Q psy9319          38 EHHKLEEQNILKAHPVTCICIEFDPT-GKYFAVGSKDALVSLWDAAEL-----TCIRTFQRLDWPVRAISFSHDGALIAS  111 (432)
Q Consensus        38 d~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~~~-----~~~~~~~~h~~~V~~i~~spdg~~l~s  111 (432)
                      ...+..+..+|+||.+.|++++|+|+ +.+|+|||.|++|+|||+.+.     .+...+.+|...|.+++|+|++.+|++
T Consensus        24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            34455667789999999999999997 689999999999999998754     356788899999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCc------------------------
Q psy9319         112 GSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN------------------------  166 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~------------------------  166 (432)
                      |+.|+.|++|+...+....... +...+..+.++|++.+|++++.|+.+++||+..                        
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            9999999999999888777665 677788899999999999999999999998632                        


Q ss_pred             -------------eEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         167 -------------LKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       167 -------------i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                                   +++||+.++..+..+.+|....           ......|.+..   ++.+..|..+++||....
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v-----------~~~~~s~~~~~---l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL-----------NTVTVSPDGSL---CASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-----------EEEEECTTSSE---EEEEETTCEEEEEETTTT
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcE-----------EEEEECCCCCE---EEEEeCCCeEEEEEeccC
Confidence                         5556666555555555543211           01112344444   788899999999998753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=188.94  Aligned_cols=212  Identities=12%  Similarity=0.063  Sum_probs=155.4

Q ss_pred             CcccccccCCCC--cceeeeeeecCCCceeEEEEeecC----------------------------------cceeeEE-
Q psy9319           5 NFIPLLGLNPRP--SLYQSSVLTDISPKQLDFKFKEHH----------------------------------KLEEQNI-   47 (432)
Q Consensus         5 n~I~~l~~~p~~--~~l~~s~s~D~~~~~~~i~~~d~~----------------------------------~~~~~~~-   47 (432)
                      ..|.++.|+|++  ..+ ++++.|+++..|++.-....                                  ...+... 
T Consensus        94 ~~V~~l~~~~~~~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQF-LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             CCCCEEEECCCCSSSEE-EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             CceEEEEEcCCCCcceE-EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence            458899999998  444 77789999988887642110                                  0011123 


Q ss_pred             EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeeEEE-------EeeCCCCEEEEEEeeCC-CEEEEEeCCCeE
Q psy9319          48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-LTCIRT-------FQRLDWPVRAISFSHDG-ALIASGSEDLTI  118 (432)
Q Consensus        48 l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~-~~~~~~-------~~~h~~~V~~i~~spdg-~~l~sgs~dg~V  118 (432)
                      +.+|...|++++|+|+|.+|++| .|+.|++||+.+ +.++..       +.+|...|++++|+|++ .+|++|+.||.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            36899999999999999999998 799999999984 444442       45799999999999998 999999999999


Q ss_pred             EEEeCCCCcE----EEEEe-cCC------------ceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCC-Cceeee
Q psy9319         119 DIAHVESGKK----VYDIC-IQA------------ATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLP-EPIKKR  180 (432)
Q Consensus       119 ~vwd~~~~~~----~~~~~-~~~------------~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~-~~~~~~  180 (432)
                      ++||++++..    +..+. +..            .|.+++|+|+|.+|++++. +.        |++||+.+ +..+..
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~--------v~iwd~~~~~~~~~~  322 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS--------VKVWDLNMENRPVET  322 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE--------EEEEETTCCSSCSCC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce--------EEEEeCCCCccccce
Confidence            9999999886    56665 443            8999999999999999998 99        66666665 677777


Q ss_pred             ecCCCc--hhhhHHhhhccc---ccccccCccccccccceeccCcceeecccchhH
Q psy9319         181 KRGGTM--SSWVKAAKVNQK---THRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       181 ~~g~~m--ss~~~a~~~~~~---~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      +.+|..  +.+...... ..   .......|.+..   ++.+..|..+++||....
T Consensus       323 ~~~~~~~~~~l~~~~~~-~~i~~~~~~~~s~~~~~---l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYEN-DCIFDKFECCWNGSDSV---VMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             EESCGGGTTTHHHHHHT-SGGGCCCCEEECTTSSE---EEEECSTTEEEEEETTTC
T ss_pred             eeccccccccccccccc-cccccceEEEECCCCCE---EEEeccCCEEEEEEcCCC
Confidence            777642  111000000 00   001223355555   789999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4e-20  Score=183.07  Aligned_cols=200  Identities=13%  Similarity=0.169  Sum_probs=161.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..+ ++++.|+.+.     +|+ .++..+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++
T Consensus       109 ~~v~~~~~s~~~~~l-~~~~~dg~i~-----i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          109 NQVTCLAWSHDGNSI-VTGVENGELR-----LWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             BCEEEEEECTTSSEE-EEEETTSCEE-----EEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred             CceEEEEEcCCCCEE-EEEeCCCeEE-----EEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence            378999999999877 6777777654     455 577889999999999999999999999999999999999999876


Q ss_pred             eeEE--------------------------------------------------------EEeeCCCCEEEEEEeeCCCE
Q psy9319          85 TCIR--------------------------------------------------------TFQRLDWPVRAISFSHDGAL  108 (432)
Q Consensus        85 ~~~~--------------------------------------------------------~~~~h~~~V~~i~~spdg~~  108 (432)
                      ..+.                                                        .+.+|...|.+++|+|++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  261 (425)
T 1r5m_A          182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL  261 (425)
T ss_dssp             EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred             cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence            5443                                                        33457788999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCch
Q psy9319         109 IASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMS  187 (432)
Q Consensus       109 l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~ms  187 (432)
                      |++++.|+.|++||+.++..+..+. |...|.+++|+|++ ++++++.|+.        +++||+.++..+..+.+|...
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~--------i~i~d~~~~~~~~~~~~~~~~  332 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS--------VRLWSLKQNTLLALSIVDGVP  332 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE--------EEEEETTTTEEEEEEECTTCC
T ss_pred             EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc--------EEEEECCCCcEeEecccCCcc
Confidence            9999999999999999998888886 88899999999999 9999999999        666666667776666654321


Q ss_pred             hhhHHhhhcccccccccCccccccccceeccCcceeecccchhHHHH
Q psy9319         188 SWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKT  234 (432)
Q Consensus       188 s~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~~~  234 (432)
                      .           ......|.+..   ++.+..|..+++||....+..
T Consensus       333 i-----------~~~~~s~~~~~---l~~~~~dg~i~i~~~~~~~~~  365 (425)
T 1r5m_A          333 I-----------FAGRISQDGQK---YAVAFMDGQVNVYDLKKLNSK  365 (425)
T ss_dssp             E-----------EEEEECTTSSE---EEEEETTSCEEEEECHHHHC-
T ss_pred             E-----------EEEEEcCCCCE---EEEEECCCeEEEEECCCCccc
Confidence            1           11122344444   778888999999999876533

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.86  E-value=2.7e-20  Score=180.60  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=99.3

Q ss_pred             CcccccccCCCC--cceeeeeeecCCCceeEEEEeecCc-ceee-EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRP--SLYQSSVLTDISPKQLDFKFKEHHK-LEEQ-NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~--~~l~~s~s~D~~~~~~~i~~~d~~~-~~~~-~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      +.|.+++|+|+.  ..++++++.|+.+     .+|+..+ +..+ ..+.+|.+.|++++|+|++.+|++|+.||.|++||
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i-----~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDV-----RCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD  114 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEE-----EEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcE-----EEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence            568999999995  3344888877765     4555554 4444 78889999999999999999999999999999999


Q ss_pred             CCCCeeEEEEeeCCCCEEEEEE--eeCCCEEEEEeCCCeEEEEeCCCCcE
Q psy9319          81 AAELTCIRTFQRLDWPVRAISF--SHDGALIASGSEDLTIDIAHVESGKK  128 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~~V~~i~~--spdg~~l~sgs~dg~V~vwd~~~~~~  128 (432)
                      +.++..+. +.+|...|.+++|  +|++.+|++++.|+.|++||+.++++
T Consensus       115 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             TTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             cCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            99988765 5679999999999  88999999999999999999987653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.85  E-value=2.6e-21  Score=192.90  Aligned_cols=210  Identities=13%  Similarity=0.054  Sum_probs=137.7

Q ss_pred             CCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC--------CCCEEEEEeCCCeEEEEeCCCCe
Q psy9319          14 PRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP--------TGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus        14 p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp--------dg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      |....++++++.|.++++|++..........+..+.||.+.|++++|+|        ||++|++|+.|++|+|||+.++.
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            3344566999999998888776332222233455789999999999998        78999999999999999999888


Q ss_pred             eEEEEeeCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCcEEEEE--------------------------ecCCce
Q psy9319          86 CIRTFQRLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGKKVYDI--------------------------CIQAAT  138 (432)
Q Consensus        86 ~~~~~~~h~~~V~~i~~spdg-~~l~sgs~dg~V~vwd~~~~~~~~~~--------------------------~~~~~V  138 (432)
                      ++..+.+|...|.+++|+|++ .+|++|+.|++|++||+.++......                          .|...|
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            888888999999999999976 48999999999999999887654322                          245567


Q ss_pred             EEEEEc-cCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccc-------cccCccccc
Q psy9319         139 FTVAWH-PKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHR-------ERHQPEDRR  210 (432)
Q Consensus       139 ~~l~fs-pdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~-------er~qp~~r~  210 (432)
                      .++.|+ |+|..|++++.|+.        +++||+.++.....+.++.............+.+.       ....|.. .
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~--------i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  328 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGA--------WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY-M  328 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSE--------EEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC-T
T ss_pred             eeeeeecCCCCEEEEEeCCCC--------EEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC-C
Confidence            888886 79999999999999        55555555544444444332211111100000000       0001110 0


Q ss_pred             cccceeccCcceeecccchhHH
Q psy9319         211 KLGLLEKKKDYRVRADHFNKKK  232 (432)
Q Consensus       211 ~~glLe~~~D~~lR~~d~~~k~  232 (432)
                      ..-+..+..|..+++||....+
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~  350 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKD  350 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTT
T ss_pred             CEEEEEECCCCEEEEEECCCCc
Confidence            1124677889999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.5e-21  Score=198.61  Aligned_cols=153  Identities=4%  Similarity=-0.045  Sum_probs=131.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc-eeeEEEccCCcCEEEE--EEcCCC-CEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL-EEQNILKAHPVTCICI--EFDPTG-KYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~-~~~~~l~~h~~~V~~l--~~spdg-~~L~sgs~dg~I~iwd   80 (432)
                      ..|.+++|+|++  .+++++.|+++     .+||..++ .+...+.+|..+|+++  +|+|+| .+|+|||.|++|+|||
T Consensus       267 ~~v~sv~~s~~~--~lasgs~DgtV-----~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          267 SLITTFDFLSPT--TVVCGFKNGFV-----AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             TCEEEEEESSSS--EEEEEETTSEE-----EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             CCEEEEEecCCC--eEEEEeCCCEE-----EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            457889999864  35888888765     55555555 3456789999999999  578888 8999999999999999


Q ss_pred             CCCCeeEEEEeeCCC--CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCC
Q psy9319          81 AAELTCIRTFQRLDW--PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        81 ~~~~~~~~~~~~h~~--~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      +.++.++..+.+|..  .|.+++|+|++..+++++.|++|++||++++.++..+. |.+.|.+++|+|+|.+|++|+.|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence            998888777777764  58899999999999999999999999999998876664 999999999999999999999999


Q ss_pred             eEEEEeC
Q psy9319         158 YDRKQDC  164 (432)
Q Consensus       158 ~I~vwd~  164 (432)
                      +|++||+
T Consensus       420 tv~lwd~  426 (524)
T 2j04_B          420 SLIITNA  426 (524)
T ss_dssp             EEECCBS
T ss_pred             EEEEEec
Confidence            9999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.1e-20  Score=181.16  Aligned_cols=198  Identities=16%  Similarity=0.090  Sum_probs=150.9

Q ss_pred             CcccccccCCC--CcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCC--CCEEEEEeCCCeEEE
Q psy9319           5 NFIPLLGLNPR--PSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPT--GKYFAVGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~--~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spd--g~~L~sgs~dg~I~i   78 (432)
                      ..|.++.|+|+  +..+ ++++.|+.+..|++.     ++.  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++
T Consensus        56 ~~v~~~~~~~~~~~~~l-~s~~~dg~v~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v  129 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTIL-ASCSYDGKVLIWKEE-----NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  129 (379)
T ss_dssp             SCEEEEEECCGGGCSEE-EEEETTSCEEEEEEE-----TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             CcEEEEEeCCCCCCCEE-EEeccCCEEEEEEcC-----CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence            45788999877  5555 888888877666554     555  77888899999999999999  999999999999999


Q ss_pred             EeCCCCe--eEEEEeeCCCCEEEEEEee-------------CCCEEEEEeCCCeEEEEeCCCCcEE----EEEe-cCCce
Q psy9319          79 WDAAELT--CIRTFQRLDWPVRAISFSH-------------DGALIASGSEDLTIDIAHVESGKKV----YDIC-IQAAT  138 (432)
Q Consensus        79 wd~~~~~--~~~~~~~h~~~V~~i~~sp-------------dg~~l~sgs~dg~V~vwd~~~~~~~----~~~~-~~~~V  138 (432)
                      ||+.++.  ....+.+|...|.+++|+|             ++.+|++|+.|+.|++||+.++...    ..+. |...|
T Consensus       130 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v  209 (379)
T 3jrp_A          130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  209 (379)
T ss_dssp             EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence            9998763  4556778999999999999             6999999999999999999876532    3343 78899


Q ss_pred             EEEEEccC---CcEEEEEECCCeEEEEeCCceEEeecCCCc---eeeeec--CCCchhhhHHhhhcccccccccCccccc
Q psy9319         139 FTVAWHPK---QYLLAYACDDKYDRKQDCGNLKVFGFLPEP---IKKRKR--GGTMSSWVKAAKVNQKTHRERHQPEDRR  210 (432)
Q Consensus       139 ~~l~fspd---g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~---~~~~~~--g~~mss~~~a~~~~~~~h~er~qp~~r~  210 (432)
                      .+++|+|+   +.+|++++.|+.        +++||+.++.   ....+.  ++..           ........|.+..
T Consensus       210 ~~~~~sp~~~~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~  270 (379)
T 3jrp_A          210 RDVAWSPTVLLRSYLASVSQDRT--------CIIWTQDNEQGPWKKTLLKEEKFPD-----------VLWRASWSLSGNV  270 (379)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSC--------EEEEEESSTTSCCEEEESSSSCCSS-----------CEEEEEECSSSCC
T ss_pred             eEEEECCCCCCCCeEEEEeCCCE--------EEEEeCCCCCccceeeeeccccCCC-----------cEEEEEEcCCCCE
Confidence            99999999   899999999999        4555554432   111111  1111           1111222355554


Q ss_pred             cccceeccCcceeecccchh
Q psy9319         211 KLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       211 ~~glLe~~~D~~lR~~d~~~  230 (432)
                         ++.+..|..+++|++..
T Consensus       271 ---l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          271 ---LALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ---EEEEESSSSEEEEEEEE
T ss_pred             ---EEEecCCCcEEEEeCCC
Confidence               77888899999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.85  E-value=4.9e-20  Score=181.80  Aligned_cols=157  Identities=17%  Similarity=0.259  Sum_probs=138.4

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc---C---CcCEEEEEEcCCCCEEEEEeCC---C
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA---H---PVTCICIEFDPTGKYFAVGSKD---A   74 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~---h---~~~V~~l~~spdg~~L~sgs~d---g   74 (432)
                      ...|.+++|+|++ .+ ++++.|+     .+.+||..+++.+..+.+   |   ...|.+++|+|++.+|++++.|   +
T Consensus       186 ~~~i~~~~~~~~~-~l-~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g  258 (397)
T 1sq9_A          186 SQFATSVDISERG-LI-ATGFNNG-----TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG  258 (397)
T ss_dssp             CCCCCEEEECTTS-EE-EEECTTS-----EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred             CCCceEEEECCCc-eE-EEEeCCC-----cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCc
Confidence            4557899999999 54 7766665     567788888999999999   9   9999999999999999999999   9


Q ss_pred             eEEEEeCCCCeeEEEEee-------------CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-------c
Q psy9319          75 LVSLWDAAELTCIRTFQR-------------LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-------I  134 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~-------------h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-------~  134 (432)
                      .|++||+.++.++..+.+             |...|.+++|+|++.+|++++.||.|++||+.+++++..+.       |
T Consensus       259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  338 (397)
T 1sq9_A          259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI  338 (397)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccc
Confidence            999999999999999998             99999999999999999999999999999999999988886       4


Q ss_pred             ---------------CCceEEEEEccCC----------cEEEEEECCCeEEEEeCCceEEeecCCC
Q psy9319         135 ---------------QAATFTVAWHPKQ----------YLLAYACDDKYDRKQDCGNLKVFGFLPE  175 (432)
Q Consensus       135 ---------------~~~V~~l~fspdg----------~~l~s~s~d~~I~vwd~~~i~vwd~~~~  175 (432)
                                     ...|.+++|+|+|          .+|++++.|+.        |++|++.+|
T Consensus       339 ~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~--------i~iw~~~~g  396 (397)
T 1sq9_A          339 EEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS--------IRWFREAGG  396 (397)
T ss_dssp             GGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE--------EEEEEEEC-
T ss_pred             hhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc--------EEEEEcCCC
Confidence                           7889999999998          79999999999        555655543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.8e-20  Score=186.66  Aligned_cols=217  Identities=10%  Similarity=0.069  Sum_probs=159.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee--------EEEc--c--CCcCEEEEE--EcCCCCEEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ--------NILK--A--HPVTCICIE--FDPTGKYFAVG   70 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~--------~~l~--~--h~~~V~~l~--~spdg~~L~sg   70 (432)
                      ..|.+++|+|++..+ ++++.|+++..|++...  .+++..        ..+.  .  +...+.++.  ++|++.+|++|
T Consensus       112 ~~v~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          112 STVTQITMIPNFDAF-AVSSKDGQIIVLKVNHY--QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSEEEEEEEEEE--EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEEeCCCCEE-EEEeCCCEEEEEEeccc--cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            457899999988876 88889988888877421  122222        2222  2  556777777  56889999999


Q ss_pred             eCCCeEEEEeCCCCeeEEEEee--CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEc--
Q psy9319          71 SKDALVSLWDAAELTCIRTFQR--LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWH--  144 (432)
Q Consensus        71 s~dg~I~iwd~~~~~~~~~~~~--h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fs--  144 (432)
                      +.|+.|++||+.++.++..+.+  |...|++++|+|++.+|++|+.||.|++||++++.++..+.  +...|.+++|+  
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            9999999999999999999988  88999999999999999999999999999999999988874  66789999665  


Q ss_pred             --cCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhccc----------ccccccCc-ccccc
Q psy9319         145 --PKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQK----------THRERHQP-EDRRK  211 (432)
Q Consensus       145 --pdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~----------~h~er~qp-~~r~~  211 (432)
                        |++.+|++|+.|+.        |++||+.++.++..+.+|..............          .|...... .....
T Consensus       269 ~s~~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~  340 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTF--------LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND  340 (437)
T ss_dssp             TCTTEEEEEEESTTEE--------EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred             cCCCccEEEEEcCCCc--------EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence              46789999999999        77777777788777777652222111111000          00000000 00001


Q ss_pred             ccceeccCcceeecccchhHH
Q psy9319         212 LGLLEKKKDYRVRADHFNKKK  232 (432)
Q Consensus       212 ~glLe~~~D~~lR~~d~~~k~  232 (432)
                      .-++.+..|..|++||....+
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGG
T ss_pred             eEEEecCCCCeEEEEECCCcc
Confidence            227889999999999987654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.85  E-value=3.2e-20  Score=177.86  Aligned_cols=158  Identities=19%  Similarity=0.233  Sum_probs=129.6

Q ss_pred             CcccccccCCC--CcceeeeeeecCCCceeEEEEeecCcc---------eeeEEEccCCcCEEEEEEcCC--CCEEEEEe
Q psy9319           5 NFIPLLGLNPR--PSLYQSSVLTDISPKQLDFKFKEHHKL---------EEQNILKAHPVTCICIEFDPT--GKYFAVGS   71 (432)
Q Consensus         5 n~I~~l~~~p~--~~~l~~s~s~D~~~~~~~i~~~d~~~~---------~~~~~l~~h~~~V~~l~~spd--g~~L~sgs   71 (432)
                      ..|.+++|+|.  +..+ ++++.|+.+..|++.     ++         ..+..+.+|.+.|.+++|+|+  +.+|++++
T Consensus        58 ~~v~~~~~~~~~d~~~l-~s~~~dg~v~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRII-ASASYDKTVKLWEED-----PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             SCEEEEEECCGGGCSEE-EEEETTSCEEEEEEC-----TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             CcEEEEEEcCCCCCCEE-EEEcCCCeEEEEecC-----CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence            45889999994  6555 888888877666654     43         567888999999999999999  99999999


Q ss_pred             CCCeEEEEeCCCCe------------------------------------------------------------eEEEEe
Q psy9319          72 KDALVSLWDAAELT------------------------------------------------------------CIRTFQ   91 (432)
Q Consensus        72 ~dg~I~iwd~~~~~------------------------------------------------------------~~~~~~   91 (432)
                      .|+.|++||+.++.                                                            .+..+.
T Consensus       132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (351)
T 3f3f_A          132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP  211 (351)
T ss_dssp             TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC
T ss_pred             CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC
Confidence            99999999986432                                                            144556


Q ss_pred             eCCCCEEEEEEeeCC----CEEEEEeCCCeEEEEeCCCC-----------------------------------------
Q psy9319          92 RLDWPVRAISFSHDG----ALIASGSEDLTIDIAHVESG-----------------------------------------  126 (432)
Q Consensus        92 ~h~~~V~~i~~spdg----~~l~sgs~dg~V~vwd~~~~-----------------------------------------  126 (432)
                      +|...|++++|+|++    .+|++|+.||.|++||+.++                                         
T Consensus       212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence            789999999999998    89999999999999999865                                         


Q ss_pred             -----cEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319         127 -----KKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       127 -----~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                           ..+..+. |...|.+++|+|++.+|++++.|+.        |++|++.++.
T Consensus       292 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~--------v~iw~~~~~~  339 (351)
T 3f3f_A          292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK--------VRLWKATYSN  339 (351)
T ss_dssp             CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC--------EEEEEECTTS
T ss_pred             ccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc--------EEEEecCcCc
Confidence                 3444444 7889999999999999999999999        5556555543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.85  E-value=1.1e-19  Score=182.23  Aligned_cols=203  Identities=17%  Similarity=0.247  Sum_probs=163.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEE-----------------------------------EeecCc-ceeeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFK-----------------------------------FKEHHK-LEEQNIL   48 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~-----------------------------------~~d~~~-~~~~~~l   48 (432)
                      +.|.+++|+|++..+ ++|+.|+++.+|++.                                   +|+... ...+..+
T Consensus       148 ~~V~sv~fspdg~~l-asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~  226 (420)
T 4gga_A          148 EYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL  226 (420)
T ss_dssp             CCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             CcEEEEEECCCCCEE-EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEe
Confidence            568999999999876 888999988777632                                   233222 2334567


Q ss_pred             ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe----eEEEEeeCCCCEEEEEEeeC-CCEEEEE--eCCCeEEEE
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT----CIRTFQRLDWPVRAISFSHD-GALIASG--SEDLTIDIA  121 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~i~~spd-g~~l~sg--s~dg~V~vw  121 (432)
                      .+|...+.++.|+|+|.++++++.|+.|++|+..++.    .+..+..|...|.+++|+|+ +.+++++  +.|++|++|
T Consensus       227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw  306 (420)
T 4gga_A          227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW  306 (420)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred             cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence            7888899999999999999999999999999998764    35677789999999999995 4566654  479999999


Q ss_pred             eCCCCcEEEEEecCCceEEEEEccCCcEEEEEE--CCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccc
Q psy9319         122 HVESGKKVYDICIQAATFTVAWHPKQYLLAYAC--DDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKT  199 (432)
Q Consensus       122 d~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s--~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~  199 (432)
                      |+.++.++..+.....+.++.|+|++..+++++  .|+.        |++||+.++.++..+.||......         
T Consensus       307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~--------I~iwd~~~~~~v~~l~gH~~~V~~---------  369 (420)
T 4gga_A          307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ--------LVIWKYPTMAKVAELKGHTSRVLS---------  369 (420)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC--------EEEEETTTCCEEEEECCCSSCEEE---------
T ss_pred             eCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE--------EEEEECCCCcEEEEEcCCCCCEEE---------
Confidence            999999999999888999999999999988876  6787        788888889999999988642211         


Q ss_pred             cccccCccccccccceeccCcceeecccchh
Q psy9319         200 HRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       200 h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                        ....|++..   +++++.|.+||+||...
T Consensus       370 --l~~spdg~~---l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          370 --LTMSPDGAT---VASAAADETLRLWRCFE  395 (420)
T ss_dssp             --EEECTTSSC---EEEEETTTEEEEECCSC
T ss_pred             --EEEcCCCCE---EEEEecCCeEEEEECCC
Confidence              222466665   89999999999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.85  E-value=2.8e-20  Score=180.22  Aligned_cols=201  Identities=11%  Similarity=0.106  Sum_probs=153.7

Q ss_pred             CCcccccccCCCC---cceeeeeeecCCCceeEEEEeecCcce-eeEEEccCCcCEEEEEE------cCCCCEEEEEeCC
Q psy9319           4 QNFIPLLGLNPRP---SLYQSSVLTDISPKQLDFKFKEHHKLE-EQNILKAHPVTCICIEF------DPTGKYFAVGSKD   73 (432)
Q Consensus         4 ~n~I~~l~~~p~~---~~l~~s~s~D~~~~~~~i~~~d~~~~~-~~~~l~~h~~~V~~l~~------spdg~~L~sgs~d   73 (432)
                      ...|.++.|+|++   ..+ ++++.|+.     +.+|+..++. .+..+.+|...|.+++|      +|++.+|++|+.|
T Consensus        65 ~~~v~~~~~~~~~~~~~~l-~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           65 AKPIKCGTFGATSLQQRYL-ATGDFGGN-----LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             SSCEEEEECTTCCTTTCCE-EEEETTSC-----EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             cCcEEEEEEcCCCCCCceE-EEecCCCe-----EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            3567899999984   554 77777765     5667777777 88999999999999954      6899999999999


Q ss_pred             CeEEEEeCCCCe-eEEEEeeCCC----CEEEEE----EeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEc
Q psy9319          74 ALVSLWDAAELT-CIRTFQRLDW----PVRAIS----FSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWH  144 (432)
Q Consensus        74 g~I~iwd~~~~~-~~~~~~~h~~----~V~~i~----~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fs  144 (432)
                      +.|++||+.++. .+..+..|.+    .|.+++    |+|++.+|++++.|+.|++||+.++.......+...|.+++|+
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~  218 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFD  218 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEES
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcC
Confidence            999999999886 6778876655    799998    7889999999999999999999999988777799999999999


Q ss_pred             c---CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec-----CCCchhhhHHhhhcccccccccCcccccccccee
Q psy9319         145 P---KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR-----GGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLE  216 (432)
Q Consensus       145 p---dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~-----g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe  216 (432)
                      |   ++.+|++++.|+.|++||+        .++..+..+.     +|....           ......|.+..  -++.
T Consensus       219 ~~~~~~~~l~~~~~dg~i~i~d~--------~~~~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~--~l~~  277 (357)
T 3i2n_A          219 RKDISMNKLVATSLEGKFHVFDM--------RTQHPTKGFASVSEKAHKSTV-----------WQVRHLPQNRE--LFLT  277 (357)
T ss_dssp             CSSSSCCEEEEEESTTEEEEEEE--------EEEETTTEEEEEEEECCSSCE-----------EEEEEETTEEE--EEEE
T ss_pred             CCCCCCCEEEEECCCCeEEEEeC--------cCCCcccceeeeccCCCcCCE-----------EEEEECCCCCc--EEEE
Confidence            9   9999999999999555554        4333222221     332111           11112233331  2788


Q ss_pred             ccCcceeecccchhH
Q psy9319         217 KKKDYRVRADHFNKK  231 (432)
Q Consensus       217 ~~~D~~lR~~d~~~k  231 (432)
                      +..|..+++||....
T Consensus       278 ~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          278 AGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EETTSEEEEEEEECC
T ss_pred             EeCCCcEEEeecCCC
Confidence            899999999998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.85  E-value=2.8e-20  Score=187.36  Aligned_cols=200  Identities=15%  Similarity=0.171  Sum_probs=153.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCc----------ceeeEEEccCCcCEEEEEEcCCCC-EEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK----------LEEQNILKAHPVTCICIEFDPTGK-YFAVGSKD   73 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~----------~~~~~~l~~h~~~V~~l~~spdg~-~L~sgs~d   73 (432)
                      ..|.+++|+|++..++++++.|+.+     .+|+..+          ...+..+.+|...|++++|+|++. +|++|+.|
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V-----~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDV-----LVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCE-----EEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcE-----EEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            5678999999865566888877765     4555544          677889999999999999999988 99999999


Q ss_pred             CeEEEEeCCCCee-------EEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCC---cEEEEE-ecCCceEEE
Q psy9319          74 ALVSLWDAAELTC-------IRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESG---KKVYDI-CIQAATFTV  141 (432)
Q Consensus        74 g~I~iwd~~~~~~-------~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~---~~~~~~-~~~~~V~~l  141 (432)
                      |.|++||+.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++   .++..+ .|...|.++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999987322       456778999999999999 7889999999999999999987   455556 488999999


Q ss_pred             EEccCCc-EEEEEECCCeEEEEeCCceEEeecCC-CceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccC
Q psy9319         142 AWHPKQY-LLAYACDDKYDRKQDCGNLKVFGFLP-EPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKK  219 (432)
Q Consensus       142 ~fspdg~-~l~s~s~d~~I~vwd~~~i~vwd~~~-~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~  219 (432)
                      +|+|++. ++++|+.|+.        |++||+.+ +..+..+.+|.....           .....|.+..  -++.+..
T Consensus       284 ~~~p~~~~~l~tg~~dg~--------v~vwd~~~~~~~~~~~~~h~~~v~-----------~i~~sp~~~~--~l~s~~~  342 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKT--------VALWDLRNLKLKLHSFESHKDEIF-----------QVQWSPHNET--ILASSGT  342 (430)
T ss_dssp             EECSSCTTEEEEEETTSE--------EEEEETTCTTSCSEEEECCSSCEE-----------EEEECSSCTT--EEEEEET
T ss_pred             EeCCCCCCEEEEEeCCCe--------EEEEeCCCCCCCeEEeecCCCCEE-----------EEEECCCCCC--EEEEEeC
Confidence            9999986 7889999999        55555544 344555555432111           1112233221  2677888


Q ss_pred             cceeecccchh
Q psy9319         220 DYRVRADHFNK  230 (432)
Q Consensus       220 D~~lR~~d~~~  230 (432)
                      |..|++||...
T Consensus       343 d~~i~iwd~~~  353 (430)
T 2xyi_A          343 DRRLHVWDLSK  353 (430)
T ss_dssp             TSCCEEEEGGG
T ss_pred             CCcEEEEeCCC
Confidence            99999999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.2e-20  Score=199.57  Aligned_cols=201  Identities=13%  Similarity=0.161  Sum_probs=158.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC--CCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT--GKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd--g~~L~sgs~dg~I~iwd~~   82 (432)
                      +.|.+++|+|++..+ ++++.|+++.+|++.   ..++..+..+.+|.++|++++|+|+  +.+|++|+.||.|++||+.
T Consensus        10 ~~V~~l~~s~dg~~l-atg~~dg~I~vwd~~---~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A           10 ELIHDAVLDYYGKRL-ATCSSDKTIKIFEVE---GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             CCEEEECCCSSSCCE-EEEETTTEEEEEEEE---TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             ceeEEEEECCCCCeE-EEEECCCcEEEEecC---CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            568999999999876 777888776666553   1256778899999999999999997  9999999999999999999


Q ss_pred             CCe--eEEEEeeCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEeCCCCcE---EEEEecCCceEEEEEcc----------
Q psy9319          83 ELT--CIRTFQRLDWPVRAISFSHD--GALIASGSEDLTIDIAHVESGKK---VYDICIQAATFTVAWHP----------  145 (432)
Q Consensus        83 ~~~--~~~~~~~h~~~V~~i~~spd--g~~l~sgs~dg~V~vwd~~~~~~---~~~~~~~~~V~~l~fsp----------  145 (432)
                      ++.  .+..+.+|...|++++|+|+  +.++++|+.||.|++||+.++..   .....|...|.+++|+|          
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~  165 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  165 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence            887  67788889999999999999  99999999999999999988732   22234888999999999          


Q ss_pred             ---CCcEEEEEECCCeEEEEeCCceEEeecCCC----ceeeeecCCCchhhhHHhhhcccccccccCcc---ccccccce
Q psy9319         146 ---KQYLLAYACDDKYDRKQDCGNLKVFGFLPE----PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPE---DRRKLGLL  215 (432)
Q Consensus       146 ---dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~----~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~---~r~~~glL  215 (432)
                         ++.++++|+.||.        |++||+.++    .++..+.+|.....           .....|.   +..   ++
T Consensus       166 ~~~d~~~l~sgs~dg~--------I~iwd~~~~~~~~~~~~~~~~h~~~V~-----------~l~~sp~~~~~~~---l~  223 (753)
T 3jro_A          166 GTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSDWVR-----------DVAWSPTVLLRSY---LA  223 (753)
T ss_dssp             -CGGGCCEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSSCEE-----------EEEECCCCSSSEE---EE
T ss_pred             cCCCCCEEEEEECCCe--------EEEEeccCCcccceeeeeecCCCCcEE-----------EEEeccCCCCCCE---EE
Confidence               5899999999999        555555544    33444555542211           1122243   334   78


Q ss_pred             eccCcceeecccchhH
Q psy9319         216 EKKKDYRVRADHFNKK  231 (432)
Q Consensus       216 e~~~D~~lR~~d~~~k  231 (432)
                      .+..|..+++||....
T Consensus       224 s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          224 SVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             EEESSSCEEEEEESSS
T ss_pred             EEecCCEEEEecCCCC
Confidence            8999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.84  E-value=1.7e-19  Score=187.91  Aligned_cols=122  Identities=17%  Similarity=0.179  Sum_probs=110.2

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeEEEEeeCCC---CEEEEEEeeC-CCEEEEEeCCCe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRLDW---PVRAISFSHD-GALIASGSEDLT  117 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~---~V~~i~~spd-g~~l~sgs~dg~  117 (432)
                      ..+..+.+|...|.+++|+|++. .|++++.|+.|++||+.++.++..+.+|..   .|.+++|+|+ +.+|++++.|+.
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  230 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence            44555667777888888888876 789999999999999999999999999999   9999999999 999999999999


Q ss_pred             EEEEeCCCCcEEEEE-----ecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         118 IDIAHVESGKKVYDI-----CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       118 V~vwd~~~~~~~~~~-----~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      |++||+.+++.+..+     .|...|.+++|+ ++.+|++++.|+.|++||+.
T Consensus       231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            999999999999998     788899999999 99999999999998888764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.84  E-value=8.4e-20  Score=184.68  Aligned_cols=193  Identities=19%  Similarity=0.203  Sum_probs=159.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEc--CCCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD--PTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~s--pdg~~L~sgs~dg~I~iwd~~   82 (432)
                      ..|.++.|+|++  ++++++.|+++     .+||..+++++..+.+|.+.|.+++|+  +++.+|++|+.|++|++||+.
T Consensus       163 ~~V~~l~~~~~~--~l~s~s~dg~i-----~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          163 GGVWALKYAHGG--ILVSGSTDRTV-----RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             SCEEEEEECSTT--EEEEEETTSCE-----EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             cCEEEEEEcCCC--EEEEEeCCCCE-----EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            567889999988  45888888765     566777899999999999999999998  578999999999999999998


Q ss_pred             CCee-----------------------EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCce
Q psy9319          83 ELTC-----------------------IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAAT  138 (432)
Q Consensus        83 ~~~~-----------------------~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V  138 (432)
                      ++..                       +..+.+|...|.++  +|++.++++|+.|+.|++||+.++.++..+. |...|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  313 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI  313 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE
Confidence            7642                       55677888888877  6789999999999999999999999998886 88899


Q ss_pred             EEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceecc
Q psy9319         139 FTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKK  218 (432)
Q Consensus       139 ~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~  218 (432)
                      .+++|+|++.++++|+.|+.        |++||+.++.++..+.+|.......           ..  .+.   -++.+.
T Consensus       314 ~~~~~~~~~~~l~sg~~dg~--------i~vwd~~~~~~~~~~~~h~~~v~~~-----------~~--~~~---~l~s~s  369 (464)
T 3v7d_B          314 YSTIYDHERKRCISASMDTT--------IRIWDLENGELMYTLQGHTALVGLL-----------RL--SDK---FLVSAA  369 (464)
T ss_dssp             EEEEEETTTTEEEEEETTSC--------EEEEETTTTEEEEEECCCSSCEEEE-----------EE--CSS---EEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCc--------EEEEECCCCcEEEEEeCCCCcEEEE-----------EE--cCC---EEEEEe
Confidence            99999999999999999999        7777777888888887775321110           00  112   278889


Q ss_pred             Ccceeecccchh
Q psy9319         219 KDYRVRADHFNK  230 (432)
Q Consensus       219 ~D~~lR~~d~~~  230 (432)
                      .|..+++||...
T Consensus       370 ~dg~v~vwd~~~  381 (464)
T 3v7d_B          370 ADGSIRGWDAND  381 (464)
T ss_dssp             TTSEEEEEETTT
T ss_pred             CCCcEEEEECCC
Confidence            999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.5e-19  Score=170.19  Aligned_cols=170  Identities=18%  Similarity=0.218  Sum_probs=139.2

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeEEEEee-CCCCEEEEEEeeCCCEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELTCIRTFQR-LDWPVRAISFSHDGALIAS  111 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~i~~spdg~~l~s  111 (432)
                      +.+||  .+.....+.+|..++.+++|+| ++.+|++++.|+.|++||  .+.....+.. |...|.+++|+|++. +++
T Consensus       126 i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~  200 (313)
T 3odt_A          126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS  200 (313)
T ss_dssp             EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE
T ss_pred             EEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE
Confidence            44555  5567778889999999999998 999999999999999999  4566777777 889999999999988 999


Q ss_pred             EeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhh
Q psy9319         112 GSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWV  190 (432)
Q Consensus       112 gs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~  190 (432)
                      ++.|+.|++||+.+++++..+. |...|.+++|+|++ .|++++.|+.        |++||+.++..+..+.+|..... 
T Consensus       201 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~--------v~iwd~~~~~~~~~~~~~~~~i~-  270 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT--------VRIWSKENGSLKQVITLPAISIW-  270 (313)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE--------EEEECTTTCCEEEEEECSSSCEE-
T ss_pred             ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE--------EEEEECCCCceeEEEeccCceEE-
Confidence            9999999999999999998887 88999999999999 5889999999        77777777777777766642211 


Q ss_pred             HHhhhcccccccccCccccccccceeccCcceeecccchhHH
Q psy9319         191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKK  232 (432)
Q Consensus       191 ~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~  232 (432)
                                .....|.+.    ++.+..|..+++||....+
T Consensus       271 ----------~~~~~~~~~----~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          271 ----------SVDCMSNGD----IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             ----------EEEECTTSC----EEEEETTSCEEEEESCGGG
T ss_pred             ----------EEEEccCCC----EEEEeCCCcEEEEeCCCCc
Confidence                      111223332    6778999999999988754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.8e-20  Score=184.58  Aligned_cols=201  Identities=10%  Similarity=0.118  Sum_probs=160.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce------ee---EEEccCCcCEEEEEEcCC-CCEEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE------EQ---NILKAHPVTCICIEFDPT-GKYFAVGSKDA   74 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~------~~---~~l~~h~~~V~~l~~spd-g~~L~sgs~dg   74 (432)
                      ..|.++.|+|++..++++++.|+.+     .+||..++.      ..   ..+.+|...|.+++|+|+ +.+|++++.|+
T Consensus       114 ~~v~~~~~~~~~~~~l~s~~~dg~v-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  188 (416)
T 2pm9_A          114 SSVKTVKFNAKQDNVLASGGNNGEI-----FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN  188 (416)
T ss_dssp             SCCCEEEECSSSTTBEEEECSSSCE-----EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS
T ss_pred             cceEEEEEcCCCCCEEEEEcCCCeE-----EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC
Confidence            4678999999844455888888765     555555655      22   234689999999999998 78999999999


Q ss_pred             eEEEEeCCCCeeEEEEeeC------CCCEEEEEEeeCC-CEEEEEeCCC---eEEEEeCCCC-cEEEEEe--cCCceEEE
Q psy9319          75 LVSLWDAAELTCIRTFQRL------DWPVRAISFSHDG-ALIASGSEDL---TIDIAHVESG-KKVYDIC--IQAATFTV  141 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h------~~~V~~i~~spdg-~~l~sgs~dg---~V~vwd~~~~-~~~~~~~--~~~~V~~l  141 (432)
                      .|++||+.++..+..+..|      ...|.+++|+|++ .++++++.|+   .|++||+.++ .++..+.  |...|.++
T Consensus       189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  268 (416)
T 2pm9_A          189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL  268 (416)
T ss_dssp             CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEE
T ss_pred             CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEE
Confidence            9999999999998888876      7889999999987 6899999998   9999999986 5555554  78899999


Q ss_pred             EEcc-CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccc-cccccceeccC
Q psy9319         142 AWHP-KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPED-RRKLGLLEKKK  219 (432)
Q Consensus       142 ~fsp-dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~-r~~~glLe~~~  219 (432)
                      +|+| ++.+|++++.|+.        +++||+.++..+..+.+|......           ....|.+ ..   ++.+..
T Consensus       269 ~~s~~~~~~l~s~~~dg~--------v~~wd~~~~~~~~~~~~~~~~v~~-----------~~~s~~~~~~---l~s~~~  326 (416)
T 2pm9_A          269 DWCHQDEHLLLSSGRDNT--------VLLWNPESAEQLSQFPARGNWCFK-----------TKFAPEAPDL---FACASF  326 (416)
T ss_dssp             EECSSCSSCEEEEESSSE--------EEEECSSSCCEEEEEECSSSCCCC-----------EEECTTCTTE---EEECCS
T ss_pred             EeCCCCCCeEEEEeCCCC--------EEEeeCCCCccceeecCCCCceEE-----------EEECCCCCCE---EEEEec
Confidence            9999 9999999999999        777777788888887776432111           1223433 33   788899


Q ss_pred             cceeecccchhHH
Q psy9319         220 DYRVRADHFNKKK  232 (432)
Q Consensus       220 D~~lR~~d~~~k~  232 (432)
                      |..+++|+.....
T Consensus       327 d~~i~iw~~~~~~  339 (416)
T 2pm9_A          327 DNKIEVQTLQNLT  339 (416)
T ss_dssp             SSEEEEEESCCCC
T ss_pred             CCcEEEEEccCCC
Confidence            9999999987643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.84  E-value=1.4e-19  Score=182.33  Aligned_cols=208  Identities=18%  Similarity=0.190  Sum_probs=152.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc-------eeeEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL-------EEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALV   76 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~-------~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I   76 (432)
                      ..|.+++|+|++..++++++.|+.+..|++     .++       .....+.+|...|.+++|+| ++.+|++++.|+.|
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~-----~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i  256 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDI-----NATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL  256 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEET-----TSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeC-----CCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence            346889999999855588888877655544     442       22567789999999999999 77899999999999


Q ss_pred             EEEeCCCC---eeEEEEeeCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEeCCC-CcEEEEEe-cCCceEEEEEccCC-cE
Q psy9319          77 SLWDAAEL---TCIRTFQRLDWPVRAISFSHDGA-LIASGSEDLTIDIAHVES-GKKVYDIC-IQAATFTVAWHPKQ-YL  149 (432)
Q Consensus        77 ~iwd~~~~---~~~~~~~~h~~~V~~i~~spdg~-~l~sgs~dg~V~vwd~~~-~~~~~~~~-~~~~V~~l~fspdg-~~  149 (432)
                      ++||+.++   ..+..+..|...|++++|+|++. ++++|+.||.|++||+++ +.++..+. |...|.+++|+|++ .+
T Consensus       257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~  336 (430)
T 2xyi_A          257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI  336 (430)
T ss_dssp             EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence            99999976   57778889999999999999887 789999999999999998 55666665 88999999999998 57


Q ss_pred             EEEEECCCeEEEEeCCceEEeec----C--CCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCccee
Q psy9319         150 LAYACDDKYDRKQDCGNLKVFGF----L--PEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRV  223 (432)
Q Consensus       150 l~s~s~d~~I~vwd~~~i~vwd~----~--~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~l  223 (432)
                      |++++.|+.|++||+.....-..    .  ....+..+.+|....           ......|.+.  .-++....|..|
T Consensus       337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----------~~~~~~p~~~--~~l~s~s~dg~i  403 (430)
T 2xyi_A          337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI-----------SDFSWNPNEP--WIICSVSEDNIM  403 (430)
T ss_dssp             EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE-----------EEEEECSSST--TEEEEEETTSEE
T ss_pred             EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc-----------eEEEECCCCC--CEEEEEECCCCE
Confidence            99999999955555433110000    0  023444444443111           1111123332  126788899999


Q ss_pred             ecccchh
Q psy9319         224 RADHFNK  230 (432)
Q Consensus       224 R~~d~~~  230 (432)
                      ++|+...
T Consensus       404 ~iw~~~~  410 (430)
T 2xyi_A          404 QVWQMAE  410 (430)
T ss_dssp             EEEEECH
T ss_pred             EEeEccc
Confidence            9998865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.2e-20  Score=185.28  Aligned_cols=157  Identities=18%  Similarity=0.160  Sum_probs=136.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC------CcCEEEEEEcCCC-CEEEEEeCCC---
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH------PVTCICIEFDPTG-KYFAVGSKDA---   74 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h------~~~V~~l~~spdg-~~L~sgs~dg---   74 (432)
                      ..|.++.|+|++..++++++.|+.     +.+||..+++.+..+..|      ...|.+++|+|++ .+|++++.|+   
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNF-----ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSC-----EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCC-----EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence            457899999996555588777765     567777788888888877      7899999999987 6899999998   


Q ss_pred             eEEEEeCCCC-eeEEEEe-eCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCC-cE
Q psy9319          75 LVSLWDAAEL-TCIRTFQ-RLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQ-YL  149 (432)
Q Consensus        75 ~I~iwd~~~~-~~~~~~~-~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg-~~  149 (432)
                      .|++||+.++ .++..+. +|...|.+++|+| ++.+|++++.|+.|++||+.+++++..+. |...|.+++|+|++ .+
T Consensus       241 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             CCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             eEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence            9999999986 5677777 8999999999999 99999999999999999999999998886 78899999999999 89


Q ss_pred             EEEEECCCeEEEEeCCc
Q psy9319         150 LAYACDDKYDRKQDCGN  166 (432)
Q Consensus       150 l~s~s~d~~I~vwd~~~  166 (432)
                      |++++.|+.|++||+..
T Consensus       321 l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EEECCSSSEEEEEESCC
T ss_pred             EEEEecCCcEEEEEccC
Confidence            99999999966666543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.1e-19  Score=174.37  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=115.7

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      .....+.+|.+.|++++|+|+|.+|++|+.||.|++||+.++..+..+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCceEEEEEccCCcEEEEEECC-----CeEEEEeC
Q psy9319         123 VESGKKVYDICIQAATFTVAWHPKQYLLAYACDD-----KYDRKQDC  164 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d-----~~I~vwd~  164 (432)
                      +.+++++..+.+...|.+++|+|++.++++++.+     +.|.+||+
T Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B          103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence            9999999999999999999999999999999998     99999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.2e-20  Score=187.87  Aligned_cols=158  Identities=12%  Similarity=0.018  Sum_probs=126.0

Q ss_pred             CCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q psy9319          51 HPVTCICIEFDPTGKYF-AVGSKDALVSLWDAA--ELTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~--~~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~  125 (432)
                      |.+.|++++|+|+|.+| ++|+.|+.|+|||+.  ++.++..+.  .|...|.+++|+|++.+|++|+.+|.|++|++.+
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS  180 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence            44479999999999996 899999999999999  888888876  5678999999999999999999999999999988


Q ss_pred             CcEEE----EE-ecCCceEEEEEccC---CcEEEEEECCCeEEEEeCCceEEeecCCCceeee-ecCCCchhhhHHhhhc
Q psy9319         126 GKKVY----DI-CIQAATFTVAWHPK---QYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKR-KRGGTMSSWVKAAKVN  196 (432)
Q Consensus       126 ~~~~~----~~-~~~~~V~~l~fspd---g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~-~~g~~mss~~~a~~~~  196 (432)
                      +....    .+ .|...|.+++|+|+   +.+|++|+.|+.        |++||+.++.++.. +.+|......      
T Consensus       181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~--------i~vwd~~~~~~~~~~~~~h~~~v~~------  246 (450)
T 2vdu_B          181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH--------IKISHYPQCFIVDKWLFGHKHFVSS------  246 (450)
T ss_dssp             CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC--------EEEEEESCTTCEEEECCCCSSCEEE------
T ss_pred             cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc--------EEEEECCCCceeeeeecCCCCceEE------
Confidence            76543    33 38889999999999   999999999999        67777777776666 3355321110      


Q ss_pred             ccccccccCccccccccceeccCcceeecccchhH
Q psy9319         197 QKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       197 ~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                           .... .+..   ++.++.|..|++||+...
T Consensus       247 -----~~~s-d~~~---l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          247 -----ICCG-KDYL---LLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             -----EEEC-STTE---EEEEESSSEEEEEETTTC
T ss_pred             -----EEEC-CCCE---EEEEeCCCeEEEEECCCC
Confidence                 0011 2233   778889999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.84  E-value=8.1e-21  Score=183.42  Aligned_cols=200  Identities=16%  Similarity=0.056  Sum_probs=145.6

Q ss_pred             CcccccccCCC--CcceeeeeeecCCCceeEEEEeecCcc--eeeEEEccCCcCEEEEEEcCC--CCEEEEEeCCCeEEE
Q psy9319           5 NFIPLLGLNPR--PSLYQSSVLTDISPKQLDFKFKEHHKL--EEQNILKAHPVTCICIEFDPT--GKYFAVGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~--~~~l~~s~s~D~~~~~~~i~~~d~~~~--~~~~~l~~h~~~V~~l~~spd--g~~L~sgs~dg~I~i   78 (432)
                      +.|.+++|+|.  +. ++++|+.|+++.+|     |..++  .....+.+|...|.+++|+|+  |.+|++|+.|++|++
T Consensus        58 ~~V~~v~~~~~~~~~-~l~s~s~D~~v~iW-----d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGN-ILASCSYDRKVIIW-----REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             SCEEEEEECCGGGSS-CEEEEETTSCEEEE-----CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             ccEEEEEeCCCCCCC-EEEEEECCCEEEEE-----ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            45788999763  44 45889999876555     55555  456778899999999999997  789999999999999


Q ss_pred             EeCCCCee---EEEEeeCCCCEEEEEEeeC-----------------CCEEEEEeCCCeEEEEeCCCC---cEEEEEe-c
Q psy9319          79 WDAAELTC---IRTFQRLDWPVRAISFSHD-----------------GALIASGSEDLTIDIAHVESG---KKVYDIC-I  134 (432)
Q Consensus        79 wd~~~~~~---~~~~~~h~~~V~~i~~spd-----------------g~~l~sgs~dg~V~vwd~~~~---~~~~~~~-~  134 (432)
                      ||+..+..   ...+.+|...|.+++|+|+                 +.+|++|+.|++|++||+..+   .++..+. |
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            99986532   3455679999999999997                 468999999999999999765   3444454 8


Q ss_pred             CCceEEEEEccCC----cEEEEEECCCeEEEEeCCceEEeecCCCc-eeeeecCCCchhhhHHhhhcccccccccCcccc
Q psy9319         135 QAATFTVAWHPKQ----YLLAYACDDKYDRKQDCGNLKVFGFLPEP-IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDR  209 (432)
Q Consensus       135 ~~~V~~l~fspdg----~~l~s~s~d~~I~vwd~~~i~vwd~~~~~-~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r  209 (432)
                      ...|.+++|+|++    .+|++++.|++|++||+....     .+. ....+.+|..           ........|.+.
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~-----~~~~~~~~~~~~~~-----------~v~~v~~sp~g~  275 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS-----SNTWSPKLLHKFND-----------VVWHVSWSITAN  275 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT-----CCCCBCCEEEECSS-----------CEEEEEECTTTC
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc-----ccchhhhhhhcCCC-----------cEEEEEEcCCCC
Confidence            8899999999986    899999999995555543200     011 0111122211           111222345554


Q ss_pred             ccccceeccCcceeecccch
Q psy9319         210 RKLGLLEKKKDYRVRADHFN  229 (432)
Q Consensus       210 ~~~glLe~~~D~~lR~~d~~  229 (432)
                      .   ++.+..|..+|+|+..
T Consensus       276 ~---las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          276 I---LAVSGGDNKVTLWKES  292 (316)
T ss_dssp             C---EEEEESSSCEEEEEEC
T ss_pred             E---EEEEcCCCeEEEEEEC
Confidence            4   7888999999999754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.3e-20  Score=191.49  Aligned_cols=161  Identities=13%  Similarity=0.151  Sum_probs=127.9

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCc-----CEEEEEEcCCCCEEEEEeCCCeEE
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPV-----TCICIEFDPTGKYFAVGSKDALVS   77 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~-----~V~~l~~spdg~~L~sgs~dg~I~   77 (432)
                      +...|.+++|+|+|..+ ++++.|+.+..|+     ...  ++..+. |..     .|.+++|||||++|++|+.||+|+
T Consensus        84 ~~~~V~~vawSPdG~~L-As~s~dg~V~iwd-----~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           84 PVCYPRVCKPSPIDDWM-AVLSNNGNVSVFK-----DNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             CSCCEEEEEECSSSSCE-EEEETTSCEEEEE-----TTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCCcEEEEEECCCCCEE-EEEeCCCcEEEEe-----CCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            35779999999999988 7888888776555     222  666666 665     499999999999999999999999


Q ss_pred             EEeCCCCe-------eEEEE----eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE---EEEE--ecCCceEEE
Q psy9319          78 LWDAAELT-------CIRTF----QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK---VYDI--CIQAATFTV  141 (432)
Q Consensus        78 iwd~~~~~-------~~~~~----~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~---~~~~--~~~~~V~~l  141 (432)
                      |||+.++.       .+.++    .+|...|.+++|+|+|  +++++.|++|++||+.++..   ...+  .|...|.++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv  232 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL  232 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence            99999875       35676    5677899999999999  88899999999999988773   3455  366789999


Q ss_pred             EEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         142 AWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       142 ~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      +|+  |..|++++ ++.        |++|++.++.......||.
T Consensus       233 aFs--g~~LASa~-~~t--------IkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          233 KIV--DYKVVLTC-PGY--------VHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             EEE--TTEEEEEC-SSE--------EEEEETTTTEEEEEECSCC
T ss_pred             EEE--CCEEEEEe-CCe--------EEEEECCCCeEEEEEcCCC
Confidence            999  68888887 688        6777776655533332554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.84  E-value=4.7e-20  Score=178.96  Aligned_cols=127  Identities=21%  Similarity=0.309  Sum_probs=115.8

Q ss_pred             cCcceeeEEEccCCcCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC-CeeE-EEEeeCCCCEEEEEEeeCCCEEEEEe
Q psy9319          39 HHKLEEQNILKAHPVTCICIEFDPT---GKYFAVGSKDALVSLWDAAE-LTCI-RTFQRLDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        39 ~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~sgs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~i~~spdg~~l~sgs  113 (432)
                      ......+..+.+|.+.|++++|+|+   |.+|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++.+|++|+
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            3455667778999999999999998   69999999999999999987 5554 78889999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcEEEEEecCCceEEEEE--ccCCcEEEEEECCCeEEEEeCC
Q psy9319         114 EDLTIDIAHVESGKKVYDICIQAATFTVAW--HPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~~~~~~V~~l~f--spdg~~l~s~s~d~~I~vwd~~  165 (432)
                      .||.|++||+.++..+....|...|.+++|  +|++.+|++++.|+.|++||+.
T Consensus       106 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  159 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR  159 (368)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred             CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence            999999999999998888889999999999  8999999999999999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2e-20  Score=187.83  Aligned_cols=201  Identities=11%  Similarity=0.043  Sum_probs=148.7

Q ss_pred             CcccccccCC-CCcceeeeeeecCCCceeEEEEeecCc---ce---eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEE
Q psy9319           5 NFIPLLGLNP-RPSLYQSSVLTDISPKQLDFKFKEHHK---LE---EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVS   77 (432)
Q Consensus         5 n~I~~l~~~p-~~~~l~~s~s~D~~~~~~~i~~~d~~~---~~---~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~   77 (432)
                      ..|.+++|+| ++..+ ++++.|+++..|++     .+   +.   ....+ +|.+.|++++|+|++.+|++|+.||+|+
T Consensus        64 ~~V~~~~~s~~~~~~l-~s~s~dg~v~vwd~-----~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~  136 (437)
T 3gre_A           64 NSITSSAVSPGETPYL-ITGSDQGVIKIWNL-----KEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII  136 (437)
T ss_dssp             SCEEEEEEECSSSCEE-EEEETTSEEEEEEH-----HHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CceEEEEECCCCCCEE-EEecCCceEEEeEC-----cccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            6789999999 77766 88888876655554     33   22   23333 5999999999999999999999999999


Q ss_pred             EEeCC---CCeeEEEEee------------CCCCEEEEE--EeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---cCCc
Q psy9319          78 LWDAA---ELTCIRTFQR------------LDWPVRAIS--FSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAA  137 (432)
Q Consensus        78 iwd~~---~~~~~~~~~~------------h~~~V~~i~--~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~  137 (432)
                      +||+.   ++.....+.+            +...+.++.  ++|++.+|++|+.|+.|++||+.+++++..+.   |...
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~  216 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA  216 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc
Confidence            99994   4544443332            455677776  55789999999999999999999999988886   6789


Q ss_pred             eEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec-CCCchhhhHHhhhcccccccccCcccccccccee
Q psy9319         138 TFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR-GGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLE  216 (432)
Q Consensus       138 V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~-g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe  216 (432)
                      |.+++|+|++.+|++|+.|+.        |++||+.++.++..+. +|.......+.       .....|.+..   ++.
T Consensus       217 v~~~~~s~~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~v~~~~~-------~~~~s~~~~~---l~s  278 (437)
T 3gre_A          217 VSSICIDEECCVLILGTTRGI--------IDIWDIRFNVLIRSWSFGDHAPITHVEV-------CQFYGKNSVI---VVG  278 (437)
T ss_dssp             EEEEEECTTSCEEEEEETTSC--------EEEEETTTTEEEEEEBCTTCEEEEEEEE-------CTTTCTTEEE---EEE
T ss_pred             eEEEEECCCCCEEEEEcCCCe--------EEEEEcCCccEEEEEecCCCCceEEEEe-------ccccCCCccE---EEE
Confidence            999999999999999999999        6666666666666553 33211000000       0011233334   788


Q ss_pred             ccCcceeecccchh
Q psy9319         217 KKKDYRVRADHFNK  230 (432)
Q Consensus       217 ~~~D~~lR~~d~~~  230 (432)
                      +..|..+++||...
T Consensus       279 ~~~dg~i~iwd~~~  292 (437)
T 3gre_A          279 GSSKTFLTIWNFVK  292 (437)
T ss_dssp             ESTTEEEEEEETTT
T ss_pred             EcCCCcEEEEEcCC
Confidence            99999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3e-19  Score=169.68  Aligned_cols=201  Identities=15%  Similarity=0.102  Sum_probs=160.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++| |++..+ ++++.|+.     +.+||..++.....+..|...|.+++|+|++.+|++|+.|+.|++|++...
T Consensus        19 ~~v~~~~~-~~~~~l-~s~~~dg~-----v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           19 QDVRDVVA-VDDSKV-ASVSRDGT-----VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             SCEEEEEE-EETTEE-EEEETTSE-----EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             CCcEEEEe-cCCCEE-EEEEcCCc-----EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            46788999 888776 77777765     456666788888999999999999999999999999999999999998753


Q ss_pred             ---eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEcc-CCcEEEEEECCCeE
Q psy9319          85 ---TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHP-KQYLLAYACDDKYD  159 (432)
Q Consensus        85 ---~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fsp-dg~~l~s~s~d~~I  159 (432)
                         ..+..+.+|...|.+++|  ++.++++++.|+.|++||  .+..+..+. |...|.+++|+| ++.++++++.|+.|
T Consensus        92 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  167 (313)
T 3odt_A           92 SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI  167 (313)
T ss_dssp             TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence               567788899999999999  577999999999999999  666666665 888999999998 89999999999999


Q ss_pred             EEEeCC--------------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCcc
Q psy9319         160 RKQDCG--------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPE  207 (432)
Q Consensus       160 ~vwd~~--------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~  207 (432)
                      ++||..                                .+++||+.++..+..+.+|.....           .....|.
T Consensus       168 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-----------~~~~~~~  236 (313)
T 3odt_A          168 KLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVY-----------CIKLLPN  236 (313)
T ss_dssp             EEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-----------EEEECTT
T ss_pred             EEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEE-----------EEEEecC
Confidence            999853                                267777777777766665542111           1112233


Q ss_pred             ccccccceeccCcceeecccchhH
Q psy9319         208 DRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       208 ~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      + .   ++.+..|..+++||....
T Consensus       237 ~-~---l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          237 G-D---IVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             S-C---EEEEETTSEEEEECTTTC
T ss_pred             C-C---EEEEecCCEEEEEECCCC
Confidence            3 2   788899999999997653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.83  E-value=6e-20  Score=177.86  Aligned_cols=202  Identities=12%  Similarity=0.122  Sum_probs=149.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE-ccCCcCEEEEEEcCC---CCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL-KAHPVTCICIEFDPT---GKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l-~~h~~~V~~l~~spd---g~~L~sgs~dg~I~iwd   80 (432)
                      +.|.+++|+|++..++++++.+.  ....+.+|+..+++..... .+|..+|.+++|+|+   |.+|++|+.|+.|++||
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CceEEEEEcCCCceEEEecCccC--CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            46899999999987877776521  1345666776677665443 378999999999998   79999999999999999


Q ss_pred             CCCCe-eEEEEeeCCCCEEEEEE------eeCCCEEEEEeCCCeEEEEeCCCCc-EEEEEe-cC----CceEEEE----E
Q psy9319          81 AAELT-CIRTFQRLDWPVRAISF------SHDGALIASGSEDLTIDIAHVESGK-KVYDIC-IQ----AATFTVA----W  143 (432)
Q Consensus        81 ~~~~~-~~~~~~~h~~~V~~i~~------spdg~~l~sgs~dg~V~vwd~~~~~-~~~~~~-~~----~~V~~l~----f  143 (432)
                      +.++. .+..+.+|...|.++.|      +|++.+|++|+.|+.|++||+.++. .+..+. +.    ..|.+++    |
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            99888 88899999999999955      6889999999999999999999887 566664 33    3788888    7


Q ss_pred             ccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCc---cccccccceeccCc
Q psy9319         144 HPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQP---EDRRKLGLLEKKKD  220 (432)
Q Consensus       144 spdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp---~~r~~~glLe~~~D  220 (432)
                      +|++.++++++.|+.        +++||+.++...... ++..           ........|   .+..   ++.+..|
T Consensus       177 ~~~~~~l~~~~~d~~--------i~i~d~~~~~~~~~~-~~~~-----------~v~~~~~~~~~~~~~~---l~~~~~d  233 (357)
T 3i2n_A          177 NQEERVVCAGYDNGD--------IKLFDLRNMALRWET-NIKN-----------GVCSLEFDRKDISMNK---LVATSLE  233 (357)
T ss_dssp             C-CCCEEEEEETTSE--------EEEEETTTTEEEEEE-ECSS-----------CEEEEEESCSSSSCCE---EEEEEST
T ss_pred             CCCCCEEEEEccCCe--------EEEEECccCceeeec-CCCC-----------ceEEEEcCCCCCCCCE---EEEECCC
Confidence            899999999999999        555555554443221 1111           011111223   3333   7788889


Q ss_pred             ceeecccchhH
Q psy9319         221 YRVRADHFNKK  231 (432)
Q Consensus       221 ~~lR~~d~~~k  231 (432)
                      ..+++||....
T Consensus       234 g~i~i~d~~~~  244 (357)
T 3i2n_A          234 GKFHVFDMRTQ  244 (357)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CeEEEEeCcCC
Confidence            99999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.7e-20  Score=191.02  Aligned_cols=158  Identities=14%  Similarity=0.150  Sum_probs=123.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCc--------------eeEEE--------EeecCcceeeEEEc-cCCcCEEEEEEc
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPK--------------QLDFK--------FKEHHKLEEQNILK-AHPVTCICIEFD   61 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~--------------~~~i~--------~~d~~~~~~~~~l~-~h~~~V~~l~~s   61 (432)
                      .-|.+++|+|+|.++ ++++.|.+++              .|.+.        .|+..+++....+. +|...|.+++||
T Consensus        16 ~~v~sv~~SpDG~~i-ASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS   94 (588)
T 2j04_A           16 DWKNNLTWARDGTLY-LTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS   94 (588)
T ss_dssp             SSSCCEEECTTSCEE-EECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC
T ss_pred             ccEEEEEECCCCCEE-EEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC
Confidence            346889999999987 8888888872              12222        12233333333333 567889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCC-----CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc-------EE
Q psy9319          62 PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-----PVRAISFSHDGALIASGSEDLTIDIAHVESGK-------KV  129 (432)
Q Consensus        62 pdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~-----~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~-------~~  129 (432)
                      |+|.+||+++.||.|++||..+  ++..+. |..     .|.+++|||||++|++|+.||+|++||+.++.       .+
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l  171 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE  171 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence            9999999999999999999654  666666 665     49999999999999999999999999999885       25


Q ss_pred             EEEe-----cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319         130 YDIC-----IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       130 ~~~~-----~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                      ..+.     |...|.+++|+|+|  +++++.|++        +++|++.++.
T Consensus       172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t--------VrlWd~~~~~  213 (588)
T 2j04_A          172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS--------VFSMTVSASS  213 (588)
T ss_dssp             EEEECSCTTCCCCEEEEEEETTE--EEEEETTCC--------EEEECCCSSS
T ss_pred             eeeecccccccccEEEEEEcCCc--EEEEeCCCe--------EEEEECCCCc
Confidence            5652     55689999999999  888899999        6677766655

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.83  E-value=7e-19  Score=175.15  Aligned_cols=192  Identities=15%  Similarity=0.179  Sum_probs=149.0

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA-HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      .++.|++  ..+ ++++.|+     .+.+|+..++.....+.. |...|++++|+|+|.+|++|+.||.|++||+.++..
T Consensus        97 ~~~~~s~--~~l-~~~~~d~-----~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  168 (401)
T 4aez_A           97 NLLDWSN--LNV-VAVALER-----NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK  168 (401)
T ss_dssp             BCEEECT--TSE-EEEEETT-----EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEeecC--CCE-EEEECCC-----eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence            4455655  334 4555665     467788888888877776 889999999999999999999999999999999999


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC-CCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVE-SGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~-~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      +..+.+|...|.+++|  ++.+|++|+.||.|++||+. .+..+..+. |.+.|.+++|+|++.+|++|+.|+.      
T Consensus       169 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~------  240 (401)
T 4aez_A          169 LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV------  240 (401)
T ss_dssp             EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC------
T ss_pred             EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe------
Confidence            9999999999999999  46799999999999999998 455566665 8899999999999999999999999      


Q ss_pred             CceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCcccccccccee--ccCcceeecccchh
Q psy9319         165 GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLE--KKKDYRVRADHFNK  230 (432)
Q Consensus       165 ~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe--~~~D~~lR~~d~~~  230 (432)
                        |++||+.++..+..+.+|.....           .....|.+...  +..  +..|..+++||...
T Consensus       241 --v~iwd~~~~~~~~~~~~~~~~v~-----------~~~~~p~~~~l--l~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          241 --VQIWDARSSIPKFTKTNHNAAVK-----------AVAWCPWQSNL--LATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             --EEEEETTCSSEEEEECCCSSCCC-----------EEEECTTSTTE--EEEECCTTTCEEEEEETTT
T ss_pred             --EEEccCCCCCccEEecCCcceEE-----------EEEECCCCCCE--EEEecCCCCCEEEEEECCC
Confidence              66666666776666655532111           11122333331  233  34799999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.83  E-value=1.6e-19  Score=188.12  Aligned_cols=199  Identities=14%  Similarity=0.137  Sum_probs=160.0

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc----eeeEEEccCCcC-EEEEEEcC--CCCEEEEEeCCCeE
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL----EEQNILKAHPVT-CICIEFDP--TGKYFAVGSKDALV   76 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~----~~~~~l~~h~~~-V~~l~~sp--dg~~L~sgs~dg~I   76 (432)
                      .+.|.+++|+|++..++++ + |+     .+.+|+..++    .....+.+|... |++++|+|  ++.+|++|+.||.|
T Consensus        18 ~~~v~~~~~spdg~~l~~~-~-~~-----~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v   90 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYP-C-GK-----SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV   90 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEE-E-TT-----EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             cCceeEEEECCCCCEEEEe-c-CC-----eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence            3568999999999987444 3 33     5778888888    899999999999 99999999  99999999999999


Q ss_pred             EEEeCCCC--------eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC----CeEEEEeCCCCcEEEEEe-cCCceEEEEE
Q psy9319          77 SLWDAAEL--------TCIRTFQRLDWPVRAISFSHDGALIASGSED----LTIDIAHVESGKKVYDIC-IQAATFTVAW  143 (432)
Q Consensus        77 ~iwd~~~~--------~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d----g~V~vwd~~~~~~~~~~~-~~~~V~~l~f  143 (432)
                      ++||+.++        .....+..|...|.+++|+|++.+|++++.+    +.|++||  .+..+..+. |...|.+++|
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~  168 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHL  168 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEE
T ss_pred             EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEE
Confidence            99999754        6677888899999999999999999999987    7888888  566777665 8889999999


Q ss_pred             ccCCc-EEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCcc-ccccccceeccCcc
Q psy9319         144 HPKQY-LLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPE-DRRKLGLLEKKKDY  221 (432)
Q Consensus       144 spdg~-~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~-~r~~~glLe~~~D~  221 (432)
                      +|++. .+++++.|+.        +++||+.++..+..+.+|.....        ........|. +..   ++.+..|.
T Consensus       169 ~~~~~~~l~~~~~d~~--------v~vwd~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~---l~~~~~dg  229 (615)
T 1pgu_A          169 KQSRPMRSMTVGDDGS--------VVFYQGPPFKFSASDRTHHKQGS--------FVRDVEFSPDSGEF---VITVGSDR  229 (615)
T ss_dssp             CSSSSCEEEEEETTTE--------EEEEETTTBEEEEEECSSSCTTC--------CEEEEEECSTTCCE---EEEEETTC
T ss_pred             CCCCCcEEEEEeCCCc--------EEEEeCCCcceeeeecccCCCCc--------eEEEEEECCCCCCE---EEEEeCCC
Confidence            99997 8999999999        66666777777777766543100        0111122344 444   77888899


Q ss_pred             eeecccchh
Q psy9319         222 RVRADHFNK  230 (432)
Q Consensus       222 ~lR~~d~~~  230 (432)
                      .+++||...
T Consensus       230 ~i~vwd~~~  238 (615)
T 1pgu_A          230 KISCFDGKS  238 (615)
T ss_dssp             CEEEEETTT
T ss_pred             eEEEEECCC
Confidence            999999764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.6e-20  Score=202.96  Aligned_cols=166  Identities=13%  Similarity=0.001  Sum_probs=131.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee----EE--Ec-----cCCcCEEEEEEcCCCCEEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ----NI--LK-----AHPVTCICIEFDPTGKYFAVGSKD   73 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~----~~--l~-----~h~~~V~~l~~spdg~~L~sgs~d   73 (432)
                      ..+..++|+|++..+ ++++.|++++.|++     .++...    ..  +.     +|...|++++|+|||++||+|+.|
T Consensus       436 ~~v~sv~~spdg~~l-aSgs~DgtVrlWd~-----~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          436 RTKRQKLPAEYGTAF-ITGHSNGSVRIYDA-----SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             CCCCCCCCCSEEEEE-EEEETTSEEEEEES-----SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCcccccccCcEE-EEecCCCcEEEEEC-----CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence            445678899988866 88898887655554     444211    11  12     899999999999999999999999


Q ss_pred             CeEEEEeCCCC---------------------------------------------eeEEEEeeCCCCEEEEEEeeCCCE
Q psy9319          74 ALVSLWDAAEL---------------------------------------------TCIRTFQRLDWPVRAISFSHDGAL  108 (432)
Q Consensus        74 g~I~iwd~~~~---------------------------------------------~~~~~~~~h~~~V~~i~~spdg~~  108 (432)
                      |+|+|||+.++                                             .++..+.+|.+.|++++||||| +
T Consensus       510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~  588 (902)
T 2oaj_A          510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F  588 (902)
T ss_dssp             SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred             cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence            99999998765                                             2467788899999999999999 9


Q ss_pred             EEEEeCCCeEEEEeCCCCcEEEE--E-----ecCCceEEEEEc-----cCC---cEEEEEECCCeEEEEeCCceEEeec-
Q psy9319         109 IASGSEDLTIDIAHVESGKKVYD--I-----CIQAATFTVAWH-----PKQ---YLLAYACDDKYDRKQDCGNLKVFGF-  172 (432)
Q Consensus       109 l~sgs~dg~V~vwd~~~~~~~~~--~-----~~~~~V~~l~fs-----pdg---~~l~s~s~d~~I~vwd~~~i~vwd~-  172 (432)
                      ||+|+.|++|++||+.++..+..  +     .|...|++++|+     |||   .+|++|+.|++        |++|++ 
T Consensus       589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t--------v~~wd~~  660 (902)
T 2oaj_A          589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE--------VITYKIL  660 (902)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE--------EEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc--------EEEEEEe
Confidence            99999999999999988776542  1     366779999999     885   89999999999        555555 


Q ss_pred             --CCCceeeeecCCC
Q psy9319         173 --LPEPIKKRKRGGT  185 (432)
Q Consensus       173 --~~~~~~~~~~g~~  185 (432)
                        .+|.++..+.+|.
T Consensus       661 p~~~g~~~~~~~~~~  675 (902)
T 2oaj_A          661 PASGGKFDVQLMDIT  675 (902)
T ss_dssp             ECGGGCEEEEEEEEE
T ss_pred             cCCCCcEEEEecCce
Confidence              4566666666553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.83  E-value=2.5e-19  Score=202.88  Aligned_cols=206  Identities=18%  Similarity=0.203  Sum_probs=158.5

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP--TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~sgs~dg~I~iwd~   81 (432)
                      ...|.+++|+|++..+ ++++.|+     .+.+||..+++.+..+.+|...|.+++|+|  ++.++++|+.|+.|++||+
T Consensus       657 ~~~v~~~~~s~~~~~l-~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~  730 (1249)
T 3sfz_A          657 EDEVLCCAFSSDDSYI-ATCSADK-----KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL  730 (1249)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTS-----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEEecCCCEE-EEEeCCC-----eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC
Confidence            3568899999999877 6766665     467788889999999999999999999999  5568999999999999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec--------------CCceEEEEEccCC
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--------------QAATFTVAWHPKQ  147 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~--------------~~~V~~l~fspdg  147 (432)
                      .++.++..+.+|.+.|++++|+|++.+|++|+.||+|++||+.++.....+..              ...+.+++|+|+|
T Consensus       731 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg  810 (1249)
T 3sfz_A          731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG  810 (1249)
T ss_dssp             TSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred             CCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence            99999999999999999999999999999999999999999988776555421              1134445555555


Q ss_pred             cEEEEEECCCeEEEEeCC-----------------------------------ceEEeecCCCceeeeecCCCchhhhHH
Q psy9319         148 YLLAYACDDKYDRKQDCG-----------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKA  192 (432)
Q Consensus       148 ~~l~s~s~d~~I~vwd~~-----------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a  192 (432)
                      ..+++++ ++.+.+||+.                                   .+.+|++.++..+..+.+|.....   
T Consensus       811 ~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~---  886 (1249)
T 3sfz_A          811 DKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH---  886 (1249)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE---
T ss_pred             CEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE---
Confidence            5555444 3445555431                                   277788888888777777653211   


Q ss_pred             hhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         193 AKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       193 ~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                              .....|.+..   ++.++.|..+++|+...
T Consensus       887 --------~v~~spdg~~---l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          887 --------GVMFSPDGSS---FLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             --------EEEECTTSSE---EEEEETTSCEEEEEHHH
T ss_pred             --------EEEECCCCCE---EEEEeCCCeEEEEEccc
Confidence                    1222344444   88899999999998653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.82  E-value=9.9e-20  Score=176.26  Aligned_cols=138  Identities=9%  Similarity=-0.046  Sum_probs=108.5

Q ss_pred             eeeeeecCCCceeEEEEeecCcceeeEEEccCC---cCEEEEEEcCCCCEE------------EEEeCCCeEEEEeCCCC
Q psy9319          20 QSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP---VTCICIEFDPTGKYF------------AVGSKDALVSLWDAAEL   84 (432)
Q Consensus        20 ~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~---~~V~~l~~spdg~~L------------~sgs~dg~I~iwd~~~~   84 (432)
                      +++++.|++     |++||..+++++.++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..++
T Consensus       196 LaSgS~D~T-----IkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          196 LLGTTIMNN-----IVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             EEEEETTSE-----EEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             EEEecCCCc-----EEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            477777765     4677778999999998754   467788999999876            56888999999999999


Q ss_pred             eeEEEE-----eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceE-EEEEccCCcEEEEEECCC
Q psy9319          85 TCIRTF-----QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATF-TVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        85 ~~~~~~-----~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~-~l~fspdg~~l~s~s~d~  157 (432)
                      .++..+     .+|...+.+..+  ++.++++|+.|++|+|||+.+++++.++. |...+. +++|+|||.+|++|+.|+
T Consensus       271 k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~  348 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred             EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC
Confidence            987766     366666554444  48899999999999999999999999996 655554 689999999999999999


Q ss_pred             eEEEEeC
Q psy9319         158 YDRKQDC  164 (432)
Q Consensus       158 ~I~vwd~  164 (432)
                      +|++||+
T Consensus       349 TIklWd~  355 (356)
T 2w18_A          349 NIFVYHY  355 (356)
T ss_dssp             CEEEEEE
T ss_pred             cEEEecC
Confidence            9666653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.2e-19  Score=176.81  Aligned_cols=153  Identities=10%  Similarity=0.018  Sum_probs=124.5

Q ss_pred             CcccccccCC--CCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNP--RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA-HPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p--~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ..|.++.++|  ++..+ ++++.|+++     .+||..+++....+.. |...|++++|+|+|.+|++|+.||.|++||+
T Consensus       126 ~~v~~~~~~~~~~~~~l-~s~s~dg~i-----~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYF-IWADNRGTI-----GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             SCEEEEECCC---CCEE-EEEETTCCE-----EEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             CCEEEEEcCCCCCCCEE-EEEeCCCcE-----EEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            5688999999  88766 788888765     5566667887766644 5568999999999999999999999999999


Q ss_pred             CCCeeE-EEEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe----cCCce--EEEEEccCCcEEEEE
Q psy9319          82 AELTCI-RTFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC----IQAAT--FTVAWHPKQYLLAYA  153 (432)
Q Consensus        82 ~~~~~~-~~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~----~~~~V--~~l~fspdg~~l~s~  153 (432)
                      .++..+ ..+.. |.++|++++|+|+|.+|++++ |+.|++||++++.++..+.    +...+  .+++|+|+|.+|+++
T Consensus       200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  278 (343)
T 3lrv_A          200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY  278 (343)
T ss_dssp             SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred             CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence            999887 78888 999999999999999999999 4599999999987654432    22333  369999999999999


Q ss_pred             EC-CCeEEEEeC
Q psy9319         154 CD-DKYDRKQDC  164 (432)
Q Consensus       154 s~-d~~I~vwd~  164 (432)
                      +. |+.|++|+.
T Consensus       279 s~~d~~i~v~~~  290 (343)
T 3lrv_A          279 SNESNSLTIYKF  290 (343)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             cCCCCcEEEEEE
Confidence            98 999666655

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=7.8e-20  Score=201.11  Aligned_cols=206  Identities=10%  Similarity=0.054  Sum_probs=156.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++.++ ++++.|++     |++|+..+......+ .|..+|.+++|+| |.+|++++.|++|+|||+.++
T Consensus        18 ~~V~~lafspdg~~l-Asgs~Dg~-----I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLL-AIATVTGE-----VHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             SCEEEEEEETTTTEE-EEEETTSE-----EEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             CCcEEEEECCCCCEE-EEEeCCCE-----EEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            468999999999876 78887764     566676666665544 5788999999999 889999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE-----------E-ecCCceEEEEEccC-CcEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD-----------I-CIQAATFTVAWHPK-QYLLA  151 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~-----------~-~~~~~V~~l~fspd-g~~l~  151 (432)
                      .++..+. |...|++++|+|++.+|++|+.||.|++||+.++.+...           + .|.+.|.+++|+|+ +..++
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            9988886 778999999999999999999999999999998876411           1 26788999999996 57899


Q ss_pred             EEECCCeEEEEeCCceEEeecCCCceeeeecCCCch----hh---hHHhhhcccccccccCccccccccceeccCcceee
Q psy9319         152 YACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMS----SW---VKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVR  224 (432)
Q Consensus       152 s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~ms----s~---~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR  224 (432)
                      +|+.|+.        + +||+.++.++..+.++.-.    ..   .....+..........|.+..   ++.++.|..++
T Consensus       169 ~g~~dg~--------v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~---lasgs~Dg~i~  236 (902)
T 2oaj_A          169 ISYEYVT--------L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH---IITIHEDNSLV  236 (902)
T ss_dssp             EECSSCE--------E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE---EEEEETTCCEE
T ss_pred             EEeCCCc--------E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE---EEEEECCCeEE
Confidence            9999999        6 6777777766666554100    00   000000011222333455554   88999999999


Q ss_pred             cccchhH
Q psy9319         225 ADHFNKK  231 (432)
Q Consensus       225 ~~d~~~k  231 (432)
                      +||....
T Consensus       237 lWd~~~g  243 (902)
T 2oaj_A          237 FWDANSG  243 (902)
T ss_dssp             EEETTTC
T ss_pred             EEECCCC
Confidence            9998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.82  E-value=6.6e-19  Score=178.08  Aligned_cols=191  Identities=17%  Similarity=0.175  Sum_probs=150.9

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      .++.+  ++.. +++++.|+++     ++||..+++.+..+.+|.+.|++++|+|++ .|++|+.||+|++||+.++.++
T Consensus       126 ~~~~~--~~~~-l~sgs~dg~i-----~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~  196 (464)
T 3v7d_B          126 TCLQF--EDNY-VITGADDKMI-----RVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT  196 (464)
T ss_dssp             EEEEE--ETTE-EEEEETTSCE-----EEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEE--CCCE-EEEEcCCCcE-----EEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE
Confidence            44444  3444 4888887765     666778999999999999999999999988 9999999999999999999999


Q ss_pred             EEEeeCCCCEEEEEEee--CCCEEEEEeCCCeEEEEeCCCCcEE-----------------------EEEe-cCCceEEE
Q psy9319          88 RTFQRLDWPVRAISFSH--DGALIASGSEDLTIDIAHVESGKKV-----------------------YDIC-IQAATFTV  141 (432)
Q Consensus        88 ~~~~~h~~~V~~i~~sp--dg~~l~sgs~dg~V~vwd~~~~~~~-----------------------~~~~-~~~~V~~l  141 (432)
                      ..+.+|...|.+++|+|  ++.++++|+.|++|++||+.++...                       ..+. |...|.++
T Consensus       197 ~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  276 (464)
T 3v7d_B          197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV  276 (464)
T ss_dssp             EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred             EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence            99999999999999995  7789999999999999999877532                       2222 66667665


Q ss_pred             EEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcc
Q psy9319         142 AWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDY  221 (432)
Q Consensus       142 ~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~  221 (432)
                        +|++.++++|+.|+.        |++||+.++..+..+.+|......           ....|.+..   ++.+..|.
T Consensus       277 --~~~~~~l~~~~~d~~--------i~vwd~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~---l~sg~~dg  332 (464)
T 3v7d_B          277 --SGHGNIVVSGSYDNT--------LIVWDVAQMKCLYILSGHTDRIYS-----------TIYDHERKR---CISASMDT  332 (464)
T ss_dssp             --EEETTEEEEEETTSC--------EEEEETTTTEEEEEECCCSSCEEE-----------EEEETTTTE---EEEEETTS
T ss_pred             --cCCCCEEEEEeCCCe--------EEEEECCCCcEEEEecCCCCCEEE-----------EEEcCCCCE---EEEEeCCC
Confidence              678999999999999        667777777777777766432111           111233334   78899999


Q ss_pred             eeecccchhH
Q psy9319         222 RVRADHFNKK  231 (432)
Q Consensus       222 ~lR~~d~~~k  231 (432)
                      .+++||....
T Consensus       333 ~i~vwd~~~~  342 (464)
T 3v7d_B          333 TIRIWDLENG  342 (464)
T ss_dssp             CEEEEETTTT
T ss_pred             cEEEEECCCC
Confidence            9999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.82  E-value=6.8e-19  Score=177.17  Aligned_cols=195  Identities=16%  Similarity=0.228  Sum_probs=154.8

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |.++.+  ++..+ ++++.|+.+     .+||..+++....+.+|.+.|++++|  ++.+|++|+.||+|++||+.++.+
T Consensus       136 v~~~~~--d~~~l-~~g~~dg~i-----~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          136 VYCLQY--DDQKI-VSGLRDNTI-----KIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             EEEEEC--CSSEE-EEEESSSCE-----EEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             EEEEEE--CCCEE-EEEeCCCeE-----EEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            455544  56555 777777654     56677789999999999999999988  788999999999999999999999


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE---EEE-ecCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV---YDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~---~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      +..+.+|...|.+++|++  .++++|+.||.|++||+.++..+   ..+ .|...|.+++|  ++.++++|+.|+.|++|
T Consensus       206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence            999999999999999974  59999999999999999988765   333 38888999999  68899999999999999


Q ss_pred             eCC--------------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccc
Q psy9319         163 DCG--------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRR  210 (432)
Q Consensus       163 d~~--------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~  210 (432)
                      |+.                                .|++||+.++.++..+.+|.......           .  ..+. 
T Consensus       282 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~-----------~--~~~~-  347 (435)
T 1p22_A          282 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-----------R--FDNK-  347 (435)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE-----------E--CCSS-
T ss_pred             ECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE-----------E--ecCC-
Confidence            863                                36777777777777666654221100           0  0112 


Q ss_pred             cccceeccCcceeecccchhH
Q psy9319         211 KLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       211 ~~glLe~~~D~~lR~~d~~~k  231 (432)
                        -++.+..|..+++||....
T Consensus       348 --~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          348 --RIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             --EEEEEETTSCEEEEEHHHH
T ss_pred             --EEEEEeCCCcEEEEECCCC
Confidence              2788899999999998653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.6e-19  Score=193.30  Aligned_cols=198  Identities=16%  Similarity=0.080  Sum_probs=152.2

Q ss_pred             CcccccccCCC--CcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCC--CCEEEEEeCCCeEEE
Q psy9319           5 NFIPLLGLNPR--PSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPT--GKYFAVGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~--~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spd--g~~L~sgs~dg~I~i   78 (432)
                      ..|.++.|+|+  +..+ ++++.|+.+..|++.     ++.  .+..+.+|..+|++++|+|+  |.+|++|+.||.|++
T Consensus        54 ~~V~~l~~s~~~~~~~l-~s~s~Dg~I~vwd~~-----~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTIL-ASCSYDGKVLIWKEE-----NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             SCEEEEEECCTTSCSEE-EEEETTSCEEEEEEE-----TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             CceEEEEecCCCCCCEE-EEEeCCCeEEEEECC-----CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            46889999987  6555 888889887666654     554  77888999999999999999  999999999999999


Q ss_pred             EeCCCC--eeEEEEeeCCCCEEEEEEee-------------CCCEEEEEeCCCeEEEEeCCCCc----EEEEEe-cCCce
Q psy9319          79 WDAAEL--TCIRTFQRLDWPVRAISFSH-------------DGALIASGSEDLTIDIAHVESGK----KVYDIC-IQAAT  138 (432)
Q Consensus        79 wd~~~~--~~~~~~~~h~~~V~~i~~sp-------------dg~~l~sgs~dg~V~vwd~~~~~----~~~~~~-~~~~V  138 (432)
                      ||+.++  .....+.+|...|.+++|+|             ++.++++|+.||.|++||+.++.    +...+. |...|
T Consensus       128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V  207 (753)
T 3jro_A          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (753)
T ss_dssp             EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence            999876  34566778999999999999             58999999999999999998874    334444 88899


Q ss_pred             EEEEEccC---CcEEEEEECCCeEEEEeCCceEEeecCCCce-----eeeecCCCchhhhHHhhhcccccccccCccccc
Q psy9319         139 FTVAWHPK---QYLLAYACDDKYDRKQDCGNLKVFGFLPEPI-----KKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRR  210 (432)
Q Consensus       139 ~~l~fspd---g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~-----~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~  210 (432)
                      .+++|+|+   +.+|++|+.||.        |++||+.++..     +....++..           ........|.+..
T Consensus       208 ~~l~~sp~~~~~~~l~s~s~Dg~--------I~iwd~~~~~~~~~~~~~~~~~~~~-----------~v~~l~~spdg~~  268 (753)
T 3jro_A          208 RDVAWSPTVLLRSYLASVSQDRT--------CIIWTQDNEQGPWKKTLLKEEKFPD-----------VLWRASWSLSGNV  268 (753)
T ss_dssp             EEEEECCCCSSSEEEEEEESSSC--------EEEEEESSSSSCCBCCBSSSSCCSS-----------CCCCEEECTTTCC
T ss_pred             EEEEeccCCCCCCEEEEEecCCE--------EEEecCCCCCCcceeEEeccCCCCC-----------ceEEEEEcCCCCE
Confidence            99999999   999999999999        55555554321     111111111           1111222345444


Q ss_pred             cccceeccCcceeecccchh
Q psy9319         211 KLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       211 ~~glLe~~~D~~lR~~d~~~  230 (432)
                         ++.+..|..+++|++..
T Consensus       269 ---l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          269 ---LALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ---EEEECSSSCEECCBCCS
T ss_pred             ---EEEEcCCCEEEEEecCC
Confidence               78888999999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.81  E-value=2.1e-18  Score=172.87  Aligned_cols=196  Identities=17%  Similarity=0.202  Sum_probs=145.8

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc--cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK--AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +++.++|++++ ++ +.+ .|.     .|++||..+++....+.  +|...|+|++|+|+|.+|++|+.||+|+|||+.+
T Consensus       107 y~~~l~wS~~n-~l-Avg-ld~-----tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          107 YLNLVDWSSGN-VL-AVA-LDN-----SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             TCBCEEECTTS-EE-EEE-ETT-----EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cceeEEECCCC-EE-EEE-eCC-----EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence            35778999754 44 444 355     56888888998877665  6778899999999999999999999999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc-EEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK-KVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~-~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      +.++..+.+|...+.+++|  ++.+|++|+.|+.+++||..... .+..+. |...+..+.|+|+|.++++++.|+.   
T Consensus       179 ~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~---  253 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL---  253 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC---
T ss_pred             CcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecccc---
Confidence            9999999999999998876  46799999999999999998754 444554 8889999999999999999999999   


Q ss_pred             EeCCceEEeecCCCce----eeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         162 QDCGNLKVFGFLPEPI----KKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       162 wd~~~i~vwd~~~~~~----~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                           +.+|+..++..    +....+|.....           .....|.....+-...+..|..||+||...
T Consensus       254 -----v~i~~~~~~~~~~~~~~~~~~~~~~V~-----------~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          254 -----VNVWPSAPGEGGWVPLQTFTQHQGAVK-----------AVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             -----EEEEESSCCSSCSCCSEEECCCSSCEE-----------EEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             -----ceEEeeccccccceeeeeecccCCcee-----------eeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence                 45555444331    222222221110           011123333322234567899999999865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.81  E-value=8e-19  Score=172.38  Aligned_cols=132  Identities=12%  Similarity=0.059  Sum_probs=112.1

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCC-----------------------------------CEEEE--EeCCCe
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-----------------------------------KYFAV--GSKDAL   75 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-----------------------------------~~L~s--gs~dg~   75 (432)
                      .+.+||..+++++..+. |...|.+++|++++                                   .++++  |+.||.
T Consensus        82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~  160 (355)
T 3vu4_A           82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ  160 (355)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred             EEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence            67789988998888886 56689999888753                                   23333  577889


Q ss_pred             EEEEeCCCCe----------------eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCe-EEEEeCCCCcEEEEEe---cC
Q psy9319          76 VSLWDAAELT----------------CIRTFQRLDWPVRAISFSHDGALIASGSEDLT-IDIAHVESGKKVYDIC---IQ  135 (432)
Q Consensus        76 I~iwd~~~~~----------------~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~-V~vwd~~~~~~~~~~~---~~  135 (432)
                      |++||+.++.                ++..+.+|.+.|++++|+|+|.+|++|+.|++ |++||+.+++++..+.   |.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            9999998765                26788999999999999999999999999998 9999999999999987   88


Q ss_pred             CceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         136 AATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       136 ~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      ..|.+++|+|+|.+|++++.|++|++||+.
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            899999999999999999999996666653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.81  E-value=1.1e-18  Score=171.83  Aligned_cols=210  Identities=18%  Similarity=0.189  Sum_probs=151.4

Q ss_pred             CcccccccCC-CCcceeeeeeecCCCceeEEEEeecCcceeeEEE-------------ccCCcCEEEEEEcC-CCCEEEE
Q psy9319           5 NFIPLLGLNP-RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL-------------KAHPVTCICIEFDP-TGKYFAV   69 (432)
Q Consensus         5 n~I~~l~~~p-~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l-------------~~h~~~V~~l~~sp-dg~~L~s   69 (432)
                      ..|.+++|+| ++..+ ++++.|+.+..|     +..++.....+             .+|...|.+++|+| ++.+|++
T Consensus        44 ~~v~~~~~s~~~~~~l-~~~~~dg~i~iw-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  117 (408)
T 4a11_B           44 GGINTLDIEPVEGRYM-LSGGSDGVIVLY-----DLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS  117 (408)
T ss_dssp             SCEEEEEECTTTCCEE-EEEETTSCEEEE-----ECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred             CcEEEEEEecCCCCEE-EEEcCCCeEEEE-----ECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence            5689999999 77766 777878766544     44455444333             25999999999999 7889999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeC---CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEcc
Q psy9319          70 GSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD---GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHP  145 (432)
Q Consensus        70 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spd---g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fsp  145 (432)
                      ++.|+.|++||+.++.....+. +...+.++.|+|.   +.++++|+.|+.|.+||+.++..+..+. |...|.+++|+|
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~  196 (408)
T 4a11_B          118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP  196 (408)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred             EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence            9999999999999998887776 7889999999994   4599999999999999999999888886 888999999999


Q ss_pred             CCc-EEEEEECCCeEEEEeCCceEEeecCCCc-eeeeecCCCch---hhhHH-hhhcccccccccCccccccccceeccC
Q psy9319         146 KQY-LLAYACDDKYDRKQDCGNLKVFGFLPEP-IKKRKRGGTMS---SWVKA-AKVNQKTHRERHQPEDRRKLGLLEKKK  219 (432)
Q Consensus       146 dg~-~l~s~s~d~~I~vwd~~~i~vwd~~~~~-~~~~~~g~~ms---s~~~a-~~~~~~~h~er~qp~~r~~~glLe~~~  219 (432)
                      ++. ++++++.|+.|++||++        ++. .+..+..+...   ..... .............|.+..   ++.+..
T Consensus       197 ~~~~ll~~~~~dg~i~i~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~  265 (408)
T 4a11_B          197 RYDYILATASADSRVKLWDVR--------RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH---LLTVGT  265 (408)
T ss_dssp             SCTTEEEEEETTSCEEEEETT--------CSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE---EEEEET
T ss_pred             CCCcEEEEEcCCCcEEEEECC--------CCCcccccccccccccceeeccccccccCceeEEEEcCCCCE---EEEecC
Confidence            998 58999999996666553        322 12221111000   00000 000001111122344444   788889


Q ss_pred             cceeecccchhHH
Q psy9319         220 DYRVRADHFNKKK  232 (432)
Q Consensus       220 D~~lR~~d~~~k~  232 (432)
                      |..+++||....+
T Consensus       266 dg~i~vwd~~~~~  278 (408)
T 4a11_B          266 DNRMRLWNSSNGE  278 (408)
T ss_dssp             TSCEEEEETTTCC
T ss_pred             CCeEEEEECCCCc
Confidence            9999999987643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.81  E-value=8.5e-20  Score=176.16  Aligned_cols=195  Identities=14%  Similarity=0.097  Sum_probs=148.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce---eeEEEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE---EQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~---~~~~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd   80 (432)
                      +.|.+++|+|++..+ ++++.|+.+..|++.     ++.   ....+.+|...|++++|+|++. +|++|+.||.|++||
T Consensus        12 ~~v~~~~~s~~~~~l-~~~~~d~~v~iw~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A           12 DYISDIKIIPSKSLL-LITSWDGSLTVYKFD-----IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SCEEEEEEEGGGTEE-EEEETTSEEEEEEEE-----TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CcEEEEEEcCCCCEE-EEEcCCCeEEEEEeC-----CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            568999999998876 777777766555543     444   3556669999999999999999 999999999999999


Q ss_pred             C-CCCeeEEEEee--CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC---------CcEEEEEecCCceEEEEEccCCc
Q psy9319          81 A-AELTCIRTFQR--LDWPVRAISFSHDGALIASGSEDLTIDIAHVES---------GKKVYDICIQAATFTVAWHPKQY  148 (432)
Q Consensus        81 ~-~~~~~~~~~~~--h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~---------~~~~~~~~~~~~V~~l~fspdg~  148 (432)
                      + .++.. ..+.+  |...|.+++|+| +.+|++++.|+.|++||+.+         ++++..+.+...|.+++|+|++ 
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-  162 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence            9 77654 77788  999999999999 99999999999999999987         7766666788899999999987 


Q ss_pred             EEEEEECCCeEEEEeCCceEEeecCC-Cce--eeeecCCCchhhhHHhhhcccccccccCc-cccccccceeccCcceee
Q psy9319         149 LLAYACDDKYDRKQDCGNLKVFGFLP-EPI--KKRKRGGTMSSWVKAAKVNQKTHRERHQP-EDRRKLGLLEKKKDYRVR  224 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~i~vwd~~~-~~~--~~~~~g~~mss~~~a~~~~~~~h~er~qp-~~r~~~glLe~~~D~~lR  224 (432)
                       +++++.|+.|++||        +.+ +..  ......+...           .......| .+..   ++.+..|..++
T Consensus       163 -l~~~~~d~~i~i~d--------~~~~~~~~~~~~~~~~~~~-----------i~~i~~~~~~~~~---l~~~~~dg~i~  219 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFR--------LPLCEDDNGTIEESGLKYQ-----------IRDVALLPKEQEG---YACSSIDGRVA  219 (342)
T ss_dssp             -EEEEESTTEEEEEE--------SSCCTTCCCEEEECSCSSC-----------EEEEEECSGGGCE---EEEEETTSEEE
T ss_pred             -EEEEeCCCeEEEEE--------CCccccccceeeecCCCCc-----------eeEEEECCCCCCE---EEEEecCCcEE
Confidence             89999999955554        444 221  1111111110           00111223 3333   77788899999


Q ss_pred             cccchhH
Q psy9319         225 ADHFNKK  231 (432)
Q Consensus       225 ~~d~~~k  231 (432)
                      +|++...
T Consensus       220 i~~~~~~  226 (342)
T 1yfq_A          220 VEFFDDQ  226 (342)
T ss_dssp             EEECCTT
T ss_pred             EEEEcCC
Confidence            9998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.81  E-value=8.4e-19  Score=189.45  Aligned_cols=174  Identities=21%  Similarity=0.225  Sum_probs=148.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.++.|+|++..+ ++++.|+     .+.+|+..+++.+..+.+|.+.|++++|+|+|.+|++|+.||.|++||+.++
T Consensus        56 ~~v~~~~~s~~~~~l-~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           56 TPVRAGKFIARKNWI-IVGSDDF-----RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             SCEEEEEEEGGGTEE-EEEETTS-----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             CcEEEEEEeCCCCEE-EEEeCCC-----eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            568899999999877 6665554     5678888899999999999999999999999999999999999999999876


Q ss_pred             -eeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEcc--CCcEEEEEECCCe
Q psy9319          85 -TCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHP--KQYLLAYACDDKY  158 (432)
Q Consensus        85 -~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fsp--dg~~l~s~s~d~~  158 (432)
                       .....+.+|...|.+++|+| ++..|++++.||.|++||+.++.....+.  +...+.+++|+|  ++.+|++++.|+.
T Consensus       130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  209 (814)
T 3mkq_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT  209 (814)
T ss_dssp             SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE
T ss_pred             ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE
Confidence             67788889999999999999 89999999999999999998877766664  347788889988  8888999999999


Q ss_pred             EEEEeCC----------------------------------ceEEeecCCCceeeeecCC
Q psy9319         159 DRKQDCG----------------------------------NLKVFGFLPEPIKKRKRGG  184 (432)
Q Consensus       159 I~vwd~~----------------------------------~i~vwd~~~~~~~~~~~g~  184 (432)
                      |++||+.                                  .|++||+.++..+..+..+
T Consensus       210 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            8888852                                  3778888877776665544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.81  E-value=1.9e-18  Score=174.08  Aligned_cols=191  Identities=18%  Similarity=0.138  Sum_probs=152.9

Q ss_pred             cCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe
Q psy9319          12 LNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ   91 (432)
Q Consensus        12 ~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~   91 (432)
                      +++++..+ ++++.|+.+     .+||..+++.+..+.+|.+.|.+++|+  +.+|++|+.||+|++||+.++.++..+.
T Consensus       125 ~~~~g~~l-~sg~~dg~i-----~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  196 (445)
T 2ovr_B          125 LQFCGNRI-VSGSDDNTL-----KVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY  196 (445)
T ss_dssp             EEEETTEE-EEEETTSCE-----EEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEcCCEE-EEEECCCcE-----EEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence            44456555 777777654     667777899999999999999999998  5699999999999999999999999999


Q ss_pred             eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCC-----
Q psy9319          92 RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG-----  165 (432)
Q Consensus        92 ~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~-----  165 (432)
                      +|...|.+++|+  +..+++|+.||+|++||+.+++++..+. |...|.+++|  ++.++++|+.|+.|++||+.     
T Consensus       197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~  272 (445)
T 2ovr_B          197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL  272 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred             CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence            999999999995  5689999999999999999999988886 8889999998  68899999999998888853     


Q ss_pred             ---------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceecc
Q psy9319         166 ---------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKK  218 (432)
Q Consensus       166 ---------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~  218 (432)
                                                 .+++||+.++..+..+.+|......             ..+.+.   -++.+.
T Consensus       273 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~-------------~~~~~~---~l~~~~  336 (445)
T 2ovr_B          273 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG-------------MELKDN---ILVSGN  336 (445)
T ss_dssp             EEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE-------------EEEETT---EEEEEE
T ss_pred             EEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE-------------EEEeCC---EEEEEe
Confidence                                       2566666666666655554321100             001122   267888


Q ss_pred             Ccceeecccchh
Q psy9319         219 KDYRVRADHFNK  230 (432)
Q Consensus       219 ~D~~lR~~d~~~  230 (432)
                      .|..+++||...
T Consensus       337 ~dg~i~vwd~~~  348 (445)
T 2ovr_B          337 ADSTVKIWDIKT  348 (445)
T ss_dssp             TTSCEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence            999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.80  E-value=3e-18  Score=172.74  Aligned_cols=200  Identities=16%  Similarity=0.176  Sum_probs=158.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.++.+++  . ++++++.|+++     .+||..+++.+..+.+|...|.+++|+  +..|++|+.||.|++||+.++
T Consensus       160 ~~v~~~~~~~--~-~l~s~~~dg~i-----~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          160 GGVWSSQMRD--N-IIISGSTDRTL-----KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             SCEEEEEEET--T-EEEEEETTSCE-----EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             CCEEEEEecC--C-EEEEEeCCCeE-----EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence            3456677763  3 44777777754     666777899999999999999999996  568999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .++..+.+|...|.+++|  ++.++++|+.||.|++||+.++.++..+. |...|.+++|  ++.++++++.|+.|++||
T Consensus       230 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d  305 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD  305 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE
Confidence            999999999999999998  78899999999999999999999988886 8888999999  789999999999999999


Q ss_pred             CC--------------------------------ceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCcccccc
Q psy9319         164 CG--------------------------------NLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRK  211 (432)
Q Consensus       164 ~~--------------------------------~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~  211 (432)
                      +.                                .|++||+.++..+..+.++......  +      ....  ..+.  
T Consensus       306 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v------~~~~--~~~~--  373 (445)
T 2ovr_B          306 VETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA--V------TCLQ--FNKN--  373 (445)
T ss_dssp             TTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC--E------EEEE--ECSS--
T ss_pred             CCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC--E------EEEE--ECCC--
Confidence            73                                3677777777766666542100000  0      0000  0112  


Q ss_pred             ccceeccCcceeecccchhH
Q psy9319         212 LGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       212 ~glLe~~~D~~lR~~d~~~k  231 (432)
                       -++.+..|..+++||....
T Consensus       374 -~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          374 -FVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             -EEEEEETTSEEEEEETTTC
T ss_pred             -EEEEEeCCCeEEEEECCCC
Confidence             2788899999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.79  E-value=5.5e-18  Score=170.53  Aligned_cols=192  Identities=15%  Similarity=0.209  Sum_probs=145.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee---EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ---NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~---~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ..|.++.|+++   ++++++.|+.+.     +||..++...   ..+.+|...|.+++|  ++.+|++|+.||.|++||+
T Consensus       214 ~~v~~l~~~~~---~l~s~s~dg~i~-----vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~  283 (435)
T 1p22_A          214 EAVLHLRFNNG---MMVTCSKDRSIA-----VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT  283 (435)
T ss_dssp             SCEEEEECCTT---EEEEEETTSCEE-----EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred             CcEEEEEEcCC---EEEEeeCCCcEE-----EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence            44677777643   457888887664     4555555544   678899999999999  6889999999999999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      .++.++..+.+|...|.++.|  ++.++++|+.||.|++||+.++.++..+. |...|.+++|  ++.+|++|+.||.  
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~--  357 (435)
T 1p22_A          284 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK--  357 (435)
T ss_dssp             TTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC--
T ss_pred             CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc--
Confidence            999999999999999999988  46899999999999999999999998887 8889999999  6889999999999  


Q ss_pred             EEeCCceEEeecCCCc---------eeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         161 KQDCGNLKVFGFLPEP---------IKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       161 vwd~~~i~vwd~~~~~---------~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                            |++||+.++.         ++..+.+|.......           .  ..+..   ++.+..|..+++||+...
T Consensus       358 ------i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-----------~--~~~~~---l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          358 ------IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL-----------Q--FDEFQ---IVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             ------EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE-----------E--ECSSC---EEECCSSSEEEEEC----
T ss_pred             ------EEEEECCCCCCccccccchheeeccCCCCCeEEE-----------E--eCCCE---EEEEeCCCEEEEEECCCC
Confidence                  4555544333         555565554321110           0  12222   789999999999999875


Q ss_pred             HHH
Q psy9319         232 KKT  234 (432)
Q Consensus       232 ~~~  234 (432)
                      ...
T Consensus       416 ~~~  418 (435)
T 1p22_A          416 PAA  418 (435)
T ss_dssp             ---
T ss_pred             CCc
Confidence            443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.78  E-value=1.1e-18  Score=168.31  Aligned_cols=203  Identities=9%  Similarity=-0.028  Sum_probs=150.1

Q ss_pred             CcccccccCCCCc-ceeeeeeecCCCceeEEEEeec-CcceeeEEEcc--CCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           5 NFIPLLGLNPRPS-LYQSSVLTDISPKQLDFKFKEH-HKLEEQNILKA--HPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         5 n~I~~l~~~p~~~-~l~~s~s~D~~~~~~~i~~~d~-~~~~~~~~l~~--h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      ..|.+++|+|++. .+ ++++.|+.     +.+|+. .++. ...+.+  |...|.+++|+| +.+|++++.|+.|++||
T Consensus        57 ~~v~~~~~~~~~~~~l-~~~~~dg~-----i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd  128 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQI-YVGTVQGE-----ILKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVID  128 (342)
T ss_dssp             SCEEEEEEEESSSEEE-EEEETTSC-----EEEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEEC
T ss_pred             CceEEEEECCCCCcEE-EEEcCCCe-----EEEEEeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEc
Confidence            4678999999988 65 67777765     566666 5554 477888  999999999999 99999999999999999


Q ss_pred             CCC---------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CcEE---EEEecCCceEEEEEcc-C
Q psy9319          81 AAE---------LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES-GKKV---YDICIQAATFTVAWHP-K  146 (432)
Q Consensus        81 ~~~---------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~-~~~~---~~~~~~~~V~~l~fsp-d  146 (432)
                      +.+         +.++..+. |...|.+++|+|++  +++++.|+.|++||+.+ +...   ....+...|.+++|+| +
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  205 (342)
T 1yfq_A          129 PRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE  205 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred             ccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC
Confidence            987         66666666 88999999999987  99999999999999998 5532   2224788899999999 9


Q ss_pred             CcEEEEEECCCeEEEEeCCceEEeecCCC------ceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCc
Q psy9319         147 QYLLAYACDDKYDRKQDCGNLKVFGFLPE------PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKD  220 (432)
Q Consensus       147 g~~l~s~s~d~~I~vwd~~~i~vwd~~~~------~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D  220 (432)
                      +.++++++.|+.        +.+|++..+      .....+.+|....-.  .............|.+..   ++.+..|
T Consensus       206 ~~~l~~~~~dg~--------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~---l~~~~~d  272 (342)
T 1yfq_A          206 QEGYACSSIDGR--------VAVEFFDDQGDDYNSSKRFAFRCHRLNLKD--TNLAYPVNSIEFSPRHKF---LYTAGSD  272 (342)
T ss_dssp             GCEEEEEETTSE--------EEEEECCTTCCSTTCTTCEEEECCCCCTTC--CSSCCCEEEEEECTTTCC---EEEEETT
T ss_pred             CCEEEEEecCCc--------EEEEEEcCCCcccccccceeeecccccccc--cccceeEEEEEEcCCCCE---EEEecCC
Confidence            999999999999        555555544      455555555320000  000001111122344444   7888899


Q ss_pred             ceeecccchhH
Q psy9319         221 YRVRADHFNKK  231 (432)
Q Consensus       221 ~~lR~~d~~~k  231 (432)
                      ..+++||....
T Consensus       273 g~i~vwd~~~~  283 (342)
T 1yfq_A          273 GIISCWNLQTR  283 (342)
T ss_dssp             SCEEEEETTTT
T ss_pred             ceEEEEcCccH
Confidence            99999998653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=5.4e-18  Score=166.43  Aligned_cols=120  Identities=15%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             eEEEccCCcCEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCeeEEEEe-e-CCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q psy9319          45 QNILKAHPVTCICIEFDPTGKYFAVGSKDAL-VSLWDAAELTCIRTFQ-R-LDWPVRAISFSHDGALIASGSEDLTIDIA  121 (432)
Q Consensus        45 ~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~-I~iwd~~~~~~~~~~~-~-h~~~V~~i~~spdg~~l~sgs~dg~V~vw  121 (432)
                      +..+.+|.++|++++|+|+|.+|++|+.|++ |+|||+.++.++..+. + |...|++++|+|+|.+|++++.|++|++|
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence            7889999999999999999999999999998 9999999999999998 5 99999999999999999999999999999


Q ss_pred             eCCCCcEE--EE--------------------Ee--cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         122 HVESGKKV--YD--------------------IC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       122 d~~~~~~~--~~--------------------~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      |+..+...  ..                    +.  .......++|+|+|..|++++.||.+++|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          268 EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             ESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             EccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99765311  00                    11  1122367999999999999999999555543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.77  E-value=5.9e-17  Score=159.66  Aligned_cols=199  Identities=11%  Similarity=0.066  Sum_probs=150.7

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeC
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLWDA   81 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iwd~   81 (432)
                      +...+.+++|+|++..++++++.|+     .+.+||..+++.+..+..+. .+.+++|+|+|++|+ +++.++.|++||+
T Consensus        30 ~~~~~~~~~~s~dg~~l~~~~~~d~-----~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           30 VGSNPMGAVISPDGTKVYVANAHSN-----DVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGT-----EEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cCCCcceEEECCCCCEEEEECCCCC-----eEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            3445789999999998767776665     56778888999988888765 899999999999875 4556799999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEE-EEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEE-EEEECCCeE
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALI-ASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLL-AYACDDKYD  159 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l-~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l-~s~s~d~~I  159 (432)
                      .++..+..+.. ...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+.....+.+++|+|+|..+ ++++.++. 
T Consensus       104 ~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~-  181 (391)
T 1l0q_A          104 TSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS-  181 (391)
T ss_dssp             TTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTE-
T ss_pred             CCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCE-
Confidence            99998877774 4578999999999977 67778999999999999999888877788999999999887 56677888 


Q ss_pred             EEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceecc---CcceeecccchhH
Q psy9319         160 RKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKK---KDYRVRADHFNKK  231 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~---~D~~lR~~d~~~k  231 (432)
                             +.+||+.++..+..+..+..            .......|.+..   ++...   .+..+++||....
T Consensus       182 -------v~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~g~~---l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          182 -------ISVIDTVTNSVIDTVKVEAA------------PSGIAVNPEGTK---AYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             -------EEEEETTTTEEEEEEECSSE------------EEEEEECTTSSE---EEEEEECSSCCEEEEEETTTT
T ss_pred             -------EEEEECCCCeEEEEEecCCC------------ccceEECCCCCE---EEEEecCcCCCcEEEEECCCC
Confidence                   66666666665555433211            001112234333   33333   6889999987653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.76  E-value=6.3e-17  Score=159.45  Aligned_cols=196  Identities=12%  Similarity=0.119  Sum_probs=154.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYF-AVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~~   83 (432)
                      ..+.+++|+|++..++++++.|+     .+.+||..+++.+..+..| ..+.+++|+|+|+.| ++++.++.|++||+.+
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~-----~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASS-----TLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTT-----EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEECCCC-----EEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            46788999999998767765554     5678888899888888765 467999999999977 6888899999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEE-EEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE---CCCeE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALI-ASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC---DDKYD  159 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l-~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s---~d~~I  159 (432)
                      +..+..+..+ ..+.+++|+|++.++ ++++.++.|++||+.++..+..+.+...+.+++|+|+|.+|++++   .++. 
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-  225 (391)
T 1l0q_A          148 KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-  225 (391)
T ss_dssp             TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-
T ss_pred             CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-
Confidence            9988888755 567999999999887 567789999999999999988888888899999999999999887   6788 


Q ss_pred             EEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccc-eeccCcceeecccchh
Q psy9319         160 RKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGL-LEKKKDYRVRADHFNK  230 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~gl-Le~~~D~~lR~~d~~~  230 (432)
                             +.+||+.++..+..+..+...            ......|.+..   + +....|..+++||...
T Consensus       226 -------v~~~d~~~~~~~~~~~~~~~~------------~~~~~s~dg~~---l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          226 -------VSMIDTGTNKITARIPVGPDP------------AGIAVTPDGKK---VYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             -------EEEEETTTTEEEEEEECCSSE------------EEEEECTTSSE---EEEEETTTTEEEEEETTT
T ss_pred             -------EEEEECCCCeEEEEEecCCCc------------cEEEEccCCCE---EEEEcCCCCEEEEEECCC
Confidence                   667777777666666554311            01112244333   3 5667899999998865

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.76  E-value=4.5e-18  Score=169.38  Aligned_cols=167  Identities=11%  Similarity=0.068  Sum_probs=116.2

Q ss_pred             CcccccccCC--------CCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCe
Q psy9319           5 NFIPLLGLNP--------RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDAL   75 (432)
Q Consensus         5 n~I~~l~~~p--------~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~   75 (432)
                      +.|.+++|+|        ++. ++++++.|+++++|++.     ++.++..+.+|..+|.+++|+|++ .+|++|+.|++
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~-----~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLT-----DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEE-----TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             CceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECC-----CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence            5688999987        444 55999999887666654     677888888999999999999987 58999999999


Q ss_pred             EEEEeCCCCeeEEE-------------------------EeeCCCCEEEEEEe-eCCCEEEEEeCCCeEEEEeCCCCcEE
Q psy9319          76 VSLWDAAELTCIRT-------------------------FQRLDWPVRAISFS-HDGALIASGSEDLTIDIAHVESGKKV  129 (432)
Q Consensus        76 I~iwd~~~~~~~~~-------------------------~~~h~~~V~~i~~s-pdg~~l~sgs~dg~V~vwd~~~~~~~  129 (432)
                      |++||+.++.....                         ..+|...|.++.|+ |++..|++++.|+++++||+.++...
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~  290 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY  290 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence            99999987654322                         23577788999998 69999999999999999999877655


Q ss_pred             EEEe-cCCceE------------------EEEEcc--CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         130 YDIC-IQAATF------------------TVAWHP--KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       130 ~~~~-~~~~V~------------------~l~fsp--dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      ..+. +...+.                  .+.|+|  ++.++++|+.|+.        |++||+.++..+..+.+|.
T Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~--------V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          291 NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL--------IQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             -------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE--------EEEEETTCTTCCEEEEECS
T ss_pred             ceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE--------EEEEECCCCcEEEEecCCC
Confidence            4442 222222                  233444  3456778888999        7777777777666555543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.74  E-value=5.1e-17  Score=154.76  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=124.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce----eeEEEccCCcCEEEEEEcCCCCEE---EEEeCCCeEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE----EQNILKAHPVTCICIEFDPTGKYF---AVGSKDALVS   77 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~----~~~~l~~h~~~V~~l~~spdg~~L---~sgs~dg~I~   77 (432)
                      ..+..+.+++++..+ ++++.|+.+..|     |..+++    .......|.+.|.+++++|++..+   ++++.++.|+
T Consensus       151 ~~~~~~~~~~~~~~l-~s~~~d~~i~iw-----d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          151 QEVCGLRWAPDGRHL-ASGGNDNLVNVW-----PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  224 (318)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCEEEE-----ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred             CceEEEEEcCCCCEE-EEEecCcceeEE-----ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence            446777888988876 788888876555     444443    355667888999999999966433   4667889999


Q ss_pred             EEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe--CCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEE
Q psy9319          78 LWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS--EDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        78 iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs--~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s  154 (432)
                      +||.......... .+...+..+.|+|++..+++++  .|+.|++||+.+++++..+. |.+.|.+++|+|+|.+|++|+
T Consensus       225 lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s  303 (318)
T 4ggc_A          225 IWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA  303 (318)
T ss_dssp             EEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            9999987766554 4778899999999999888765  68999999999999999987 899999999999999999999


Q ss_pred             CCCeEEEEeC
Q psy9319         155 DDKYDRKQDC  164 (432)
Q Consensus       155 ~d~~I~vwd~  164 (432)
                      .|++|++||+
T Consensus       304 ~D~~v~iWd~  313 (318)
T 4ggc_A          304 ADETLRLWRC  313 (318)
T ss_dssp             TTTEEEEECC
T ss_pred             cCCeEEEEEC
Confidence            9999655554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.74  E-value=6.3e-17  Score=161.64  Aligned_cols=198  Identities=7%  Similarity=-0.033  Sum_probs=150.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE-----EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN-----ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLW   79 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~-----~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iw   79 (432)
                      ..+.+++|+|++ .++++++.|+.     +.+||..+++...     .+.+|.+.|.+++|+|++.++++++.|+.|++|
T Consensus       123 ~~~~~~~~s~~~-~~~~~~~~~~~-----i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~  196 (433)
T 3bws_A          123 FQPKSVRFIDNT-RLAIPLLEDEG-----MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF  196 (433)
T ss_dssp             SCBCCCEESSSS-EEEEEBTTSSS-----EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred             CCceEEEEeCCC-eEEEEeCCCCe-----EEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence            445688999944 45466655543     6777888888776     455889999999999999999999999999999


Q ss_pred             eCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE----
Q psy9319          80 DAAELTCIRTFQRLDWPVRAISFSHDGALIASG-SEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC----  154 (432)
Q Consensus        80 d~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s----  154 (432)
                      |+.++..+..+..|...+.+++|+|++..++++ +.|+.|++||+.++..+..+.....+.+++|+|+|.++++++    
T Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESC
T ss_pred             ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCC
Confidence            999999999998899999999999999988554 479999999999999988887777799999999999999888    


Q ss_pred             ----CCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         155 ----DDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       155 ----~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                          .|+.        |.+||+.++..+..+....            ........|.+..  -++....|..+++||...
T Consensus       277 ~~~~~dg~--------i~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~g~~--l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          277 NQESGGGR--------LGIYSMDKEKLIDTIGPPG------------NKRHIVSGNTENK--IYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             TTCSCCEE--------EEEEETTTTEEEEEEEEEE------------CEEEEEECSSTTE--EEEEETTTTEEEEEETTT
T ss_pred             ccccCCCe--------EEEEECCCCcEEeeccCCC------------CcceEEECCCCCE--EEEEecCCCEEEEEECCC
Confidence                4777        5566666655544331100            0000111233322  135557788999998864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=2.2e-17  Score=167.06  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=118.0

Q ss_pred             CcccccccCCCCcceee---eeeecCCCceeEEEEeecCcc--------e---eeEEEccCCcCEEEEEEcCC-CCEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQS---SVLTDISPKQLDFKFKEHHKL--------E---EQNILKAHPVTCICIEFDPT-GKYFAV   69 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~---s~s~D~~~~~~~i~~~d~~~~--------~---~~~~l~~h~~~V~~l~~spd-g~~L~s   69 (432)
                      ..|.+++|+|++..+++   +++.|++     +++||..++        +   ....+.+|...|.+++|+|+ +.+|++
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSI-----IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEE-----EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCce-----EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence            45889999999998854   5655654     455554443        1   24566789999999999997 899999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-c-------CCceEEE
Q psy9319          70 GSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-I-------QAATFTV  141 (432)
Q Consensus        70 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~-------~~~V~~l  141 (432)
                      ++.||+|++||+.++..+....+|...|++++|+|+|.+|++|+.||.|++||++ +.....+. +       ...|.++
T Consensus       168 ~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             EETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             EECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            9999999999999987777777889999999999999999999999999999998 66655553 2       1278999


Q ss_pred             EEccCCcEEEEE-ECCC
Q psy9319         142 AWHPKQYLLAYA-CDDK  157 (432)
Q Consensus       142 ~fspdg~~l~s~-s~d~  157 (432)
                      +|++++.++++. +.+|
T Consensus       247 ~w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADG  263 (434)
T ss_dssp             EEEETTEEEEEEEETTC
T ss_pred             EEecCceEEEEEccCCC
Confidence            999998877654 3443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.72  E-value=7.1e-16  Score=153.99  Aligned_cols=195  Identities=15%  Similarity=0.103  Sum_probs=150.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe--------CCCeE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS--------KDALV   76 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs--------~dg~I   76 (432)
                      ..+.+++|+|++..++++++.|+     .+.+||..+++.+..+..+ ..+.+++|+|+|..|++++        .|+.|
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~-----~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i  285 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISE-----DISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRL  285 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTT-----EEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEE
T ss_pred             CCeeEEEEcCCCCEEEEEecCCC-----cEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeE
Confidence            45688999999988867765554     5678888888888888765 4589999999999999888        58899


Q ss_pred             EEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEE-EEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC
Q psy9319          77 SLWDAAELTCIRTFQRLDWPVRAISFSHDGALI-ASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        77 ~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l-~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ++||+.++..+..+ .|...+.+++|+|++..+ ++++.|+.|.+||+.+++.+..+.+...+.+++|+|+|.++++++.
T Consensus       286 ~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          286 GIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEC
T ss_pred             EEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEec
Confidence            99999998877665 466689999999999755 5668899999999999999988888888999999999999988876


Q ss_pred             ---------------CCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceec-cC
Q psy9319         156 ---------------DKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEK-KK  219 (432)
Q Consensus       156 ---------------d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~-~~  219 (432)
                                     ||.        +.+||+.++..+..+.++..            .......|.+..   ++.. ..
T Consensus       365 ~~~~~~~~~~~~g~~dg~--------v~~~d~~~~~~~~~~~~~~~------------~~~~~~s~dg~~---l~~~~~~  421 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGK--------VYVIDTTTDTVKEFWEAGNQ------------PTGLDVSPDNRY---LVISDFL  421 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCE--------EEEEETTTTEEEEEEECSSS------------EEEEEECTTSCE---EEEEETT
T ss_pred             CCCccccccccccccceE--------EEEEECCCCcEEEEecCCCC------------CceEEEcCCCCE---EEEEECC
Confidence                           357        77777777777666654321            011122344443   4444 45


Q ss_pred             cceeecccch
Q psy9319         220 DYRVRADHFN  229 (432)
Q Consensus       220 D~~lR~~d~~  229 (432)
                      |..+++|+..
T Consensus       422 d~~i~v~~~~  431 (433)
T 3bws_A          422 DHQIRVYRRD  431 (433)
T ss_dssp             TTEEEEEEET
T ss_pred             CCeEEEEEec
Confidence            9999999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.70  E-value=4.9e-17  Score=164.47  Aligned_cols=152  Identities=13%  Similarity=0.086  Sum_probs=115.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcc----------------eeeEEEccCCcCEEEEEEcCCCCEEE-
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL----------------EEQNILKAHPVTCICIEFDPTGKYFA-   68 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~----------------~~~~~l~~h~~~V~~l~~spdg~~L~-   68 (432)
                      .++.++++|.+.+++ +++.|+      +.+|+....                ..... -.|.+.|.+++|+|+|.+|+ 
T Consensus        38 ~~n~lavs~~~~~l~-~~~~dg------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           38 RSSLLAVSNKYGLVF-AGGASG------LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CCBCEEEETTTTEEE-EEETTE------EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEE
T ss_pred             CccEEEEecCCCEEE-EECCCE------EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEE
Confidence            468888999888774 444443      333322110                01111 23567899999999999999 


Q ss_pred             ---EEeCCCeEEEEeCCCC--------ee---EEEEeeCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEeCCCCcEEEEE-
Q psy9319          69 ---VGSKDALVSLWDAAEL--------TC---IRTFQRLDWPVRAISFSHD-GALIASGSEDLTIDIAHVESGKKVYDI-  132 (432)
Q Consensus        69 ---sgs~dg~I~iwd~~~~--------~~---~~~~~~h~~~V~~i~~spd-g~~l~sgs~dg~V~vwd~~~~~~~~~~-  132 (432)
                         +|+.|+.|+|||+.++        ..   +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+... 
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence               7888999999998654        22   4555679999999999997 889999999999999999998665444 


Q ss_pred             ecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         133 CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       133 ~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      .|...|.+++|+|+|.+|++|+.|+.|++||++
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            378889999999999999999999995555543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.69  E-value=1.7e-15  Score=151.94  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=126.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCe--EEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDAL--VSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~--I~iwd~   81 (432)
                      ..+.+++|+|++..+ ++++.|.  ....+.+||..+++.. .+..|.+.+.+++|+|||+.|+ +++.++.  |++||+
T Consensus       179 ~~v~~~~~Spdg~~l-a~~s~~~--~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~  254 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKL-AYVTFES--GRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  254 (415)
T ss_dssp             SCEEEEEECTTSSEE-EEEECTT--SSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CcceeeEEcCCCCEE-EEEEecC--CCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence            457889999999977 5555553  2357889999888765 5778888999999999999887 6666654  999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-CC--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC--
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSE-DL--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD--  156 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-dg--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d--  156 (432)
                      .++.. ..+..|...+.+++|+|||++|++++. ++  .|++||+.++.......+...+.+++|+|+|.+|++++.+  
T Consensus       255 ~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          255 ASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             TTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             CCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence            98775 567778889999999999999998886 44  7888899888754433466778999999999999988764  


Q ss_pred             -CeEEEEeCCceEEeecCCCce
Q psy9319         157 -KYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       157 -~~I~vwd~~~i~vwd~~~~~~  177 (432)
                       ..        |.+||+.++..
T Consensus       334 ~~~--------i~~~d~~~~~~  347 (415)
T 2hqs_A          334 QQH--------IAKQDLATGGV  347 (415)
T ss_dssp             CEE--------EEEEETTTCCE
T ss_pred             ceE--------EEEEECCCCCE
Confidence             35        66777776655

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.66  E-value=1.1e-14  Score=146.01  Aligned_cols=138  Identities=14%  Similarity=0.148  Sum_probs=112.7

Q ss_pred             eEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCE
Q psy9319          32 LDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA---LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGAL  108 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~  108 (432)
                      ..+.+||.. +.....+.+|...|.+++|||+|+.|++++.++   .|++||+.++.+. .+..|...+.+++|+|||+.
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~  236 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK  236 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCE
Confidence            688899986 566788889999999999999999999999885   9999999988765 56678889999999999998


Q ss_pred             EE-EEeCCC--eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC-CCeEEEEeCCceEEeecCCCce
Q psy9319         109 IA-SGSEDL--TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD-DKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       109 l~-sgs~dg--~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      |+ +++.++  .|++||+.+++......+...+.+++|+|+|..|++++. ++.      ..+.+||+.++..
T Consensus       237 la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~------~~i~~~d~~~~~~  303 (415)
T 2hqs_A          237 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR------PQVYKVNINGGAP  303 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTSSCC
T ss_pred             EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCC------cEEEEEECCCCCE
Confidence            88 666555  499999999887544457788999999999999998886 443      1255566666553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.61  E-value=1e-14  Score=156.24  Aligned_cols=150  Identities=14%  Similarity=0.138  Sum_probs=118.1

Q ss_pred             CcccccccCCCCcceeeeeee-cCCCceeEEEEeecCcceeeEEEccCCc------------------------CEEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLT-DISPKQLDFKFKEHHKLEEQNILKAHPV------------------------TCICIE   59 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~-D~~~~~~~i~~~d~~~~~~~~~l~~h~~------------------------~V~~l~   59 (432)
                      ..+..++|+|++..+ ++++. |+......+.+||..+++....+..+..                        .|.+++
T Consensus        37 ~~~~~~~~SpdG~~l-a~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRV-TFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEE-EEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCceEecCCCEE-EEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            346789999999987 44444 6544456888999999888777765543                        378999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCe--eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCc
Q psy9319          60 FDPTGKYFAVGSKDALVSLWDAAELT--CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAA  137 (432)
Q Consensus        60 ~spdg~~L~sgs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~  137 (432)
                      |||||++|++++. +.|.+||+.++.  ....+..|...+.+++|||||++|++++. +.|++||+.++...........
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence            9999999999886 899999999872  34556778889999999999999999884 5899999998876654432221


Q ss_pred             -----------------eEEEEEccCCcEEEEEECCC
Q psy9319         138 -----------------TFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       138 -----------------V~~l~fspdg~~l~s~s~d~  157 (432)
                                       +.+++|||||++|++++.|+
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence                             47799999999999987665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=4.4e-13  Score=129.39  Aligned_cols=164  Identities=7%  Similarity=-0.040  Sum_probs=130.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcC---------EEEEEEcCCCCEEEEEe--CCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVT---------CICIEFDPTGKYFAVGS--KDA   74 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~---------V~~l~~spdg~~L~sgs--~dg   74 (432)
                      .+..+.++|++..+++++..+.     .+.+||..+++.+..+..+...         +.+++|+|+|..+++++  .++
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  164 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNS-----AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES  164 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTT-----EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred             CcceEEECCCCCEEEEEecCCC-----EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence            3567889999986656654443     6778888899888888765432         78999999999877765  478


Q ss_pred             eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec-----CCceEEEEEccCCcE
Q psy9319          75 LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI-----QAATFTVAWHPKQYL  149 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~-----~~~V~~l~fspdg~~  149 (432)
                      .|.+||+.++..+..+..+...+.+++|+|+|.++++++.++.|.+||+.+++.+..+..     ...+..++|+|+|.+
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  244 (353)
T 3vgz_A          165 VIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR  244 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred             eEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence            999999999998888875666788999999999999999999999999999998877753     345778999999998


Q ss_pred             EEEEECC-CeEEEEeCCceEEeecCCCceeeeec
Q psy9319         150 LAYACDD-KYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       150 l~s~s~d-~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      +++++.+ +.        +.+||+.++..+..+.
T Consensus       245 l~~~~~~~~~--------v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          245 AFITDSKAAE--------VLVVDTRNGNILAKVA  270 (353)
T ss_dssp             EEEEESSSSE--------EEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCCE--------EEEEECCCCcEEEEEE
Confidence            7777654 67        6677777776666554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.54  E-value=6.7e-13  Score=128.10  Aligned_cols=163  Identities=9%  Similarity=0.033  Sum_probs=127.6

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      +..+.|+|++..+++++..+    ...+.+||..+++.+..+..+...+.+++|+|+|+.|++++.++.|.+||+.++..
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~  218 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI  218 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred             CceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence            56789999998775554221    23577888889999888886666688999999999999999999999999999988


Q ss_pred             EEEEee----CCCCEEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE-CCCeEE
Q psy9319          87 IRTFQR----LDWPVRAISFSHDGALIASGSE-DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC-DDKYDR  160 (432)
Q Consensus        87 ~~~~~~----h~~~V~~i~~spdg~~l~sgs~-dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~  160 (432)
                      ...+..    +...+.+++|+|+|.++++++. ++.|.+||+.+++.+..+....+ ..++|+|+|.++++++ .++.  
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~--  295 (353)
T 3vgz_A          219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGK--  295 (353)
T ss_dssp             EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTE--
T ss_pred             EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCe--
Confidence            877764    4556889999999998777664 59999999999999888874443 5699999999766665 6788  


Q ss_pred             EEeCCceEEeecCCCceeeeec
Q psy9319         161 KQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       161 vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                            +.+||+.++..+..+.
T Consensus       296 ------v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          296 ------VSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             ------EEEEETTTTEEEEEEE
T ss_pred             ------EEEEECCCCeEEEEEe
Confidence                  5555555555554443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.53  E-value=5.5e-14  Score=150.00  Aligned_cols=148  Identities=10%  Similarity=0.051  Sum_probs=115.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCc---CEEEEEEcCCCCEEEEEeCC---------C
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPV---TCICIEFDPTGKYFAVGSKD---------A   74 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~---~V~~l~~spdg~~L~sgs~d---------g   74 (432)
                      +..++|+|++.++ ++ +.|+     .+.+||..+++....+.+|..   .|.+++|||||++|++++.+         +
T Consensus        19 ~~~~~~spdg~~~-~~-~~dg-----~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           19 DPEAKWISDTEFI-YR-EQKG-----TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCBSSSSCBC-CC-CSSS-----CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             ccccEEcCCCcEE-EE-eCCC-----CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            5788999999854 44 4444     678889889988888888765   48999999999999999875         7


Q ss_pred             eEEEEeCCCCeeEEEEe---eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCce------------
Q psy9319          75 LVSLWDAAELTCIRTFQ---RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAAT------------  138 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~---~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V------------  138 (432)
                      .|.+||+.++.. ..+.   +|...+.+++|||||+.|++++. +.|++||+.++....... +...+            
T Consensus        92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            888999998876 3343   34445889999999999999886 789999999988766554 23323            


Q ss_pred             ------EEEEEccCCcEEEEEECCC-eEEEEe
Q psy9319         139 ------FTVAWHPKQYLLAYACDDK-YDRKQD  163 (432)
Q Consensus       139 ------~~l~fspdg~~l~s~s~d~-~I~vwd  163 (432)
                            .+++|||||+.|++++.++ .+.+|+
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~  201 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence                  7899999999999887553 344554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.52  E-value=6.1e-13  Score=127.24  Aligned_cols=164  Identities=8%  Similarity=-0.029  Sum_probs=124.7

Q ss_pred             cccccccCCCCcceeeeeeec----CCC--ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTD----ISP--KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLW   79 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D----~~~--~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iw   79 (432)
                      .+..+.|+|++..++++....    ...  ....+.+||..+++.+..+.. ...+.+++|+|+|++|+++  ++.|.+|
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            467789999998775553211    000  235778899888888877765 3457789999999988887  6889999


Q ss_pred             eCCCCeeEEEEeeC------------------------------------------------------------------
Q psy9319          80 DAAELTCIRTFQRL------------------------------------------------------------------   93 (432)
Q Consensus        80 d~~~~~~~~~~~~h------------------------------------------------------------------   93 (432)
                      |+.++.....+..+                                                                  
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  239 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence            99877665444322                                                                  


Q ss_pred             CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecC
Q psy9319          94 DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFL  173 (432)
Q Consensus        94 ~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~  173 (432)
                      ...+.+++|+|+|++++++  ++.|.+||+.+++.+..+.....+.+++|+|+|++|++++.++.        |.+||+.
T Consensus       240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--------i~v~d~~  309 (337)
T 1pby_B          240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD--------LAAYDAE  309 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSE--------EEEEETT
T ss_pred             CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCc--------EEEEECc
Confidence            1234568999999999888  78999999999998888877777899999999999998888888        6677777


Q ss_pred             CCceeeeec
Q psy9319         174 PEPIKKRKR  182 (432)
Q Consensus       174 ~~~~~~~~~  182 (432)
                      ++..+..+.
T Consensus       310 ~~~~~~~~~  318 (337)
T 1pby_B          310 TLEKKGQVD  318 (337)
T ss_dssp             TCCEEEEEE
T ss_pred             CCcEEEEEE
Confidence            776666554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.50  E-value=3.8e-13  Score=125.57  Aligned_cols=148  Identities=13%  Similarity=0.084  Sum_probs=108.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCc-ceeeEEEccCC-cCEEEEEEcCCCCEEEEEeC--CC--eEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK-LEEQNILKAHP-VTCICIEFDPTGKYFAVGSK--DA--LVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~-~~~~~~l~~h~-~~V~~l~~spdg~~L~sgs~--dg--~I~i   78 (432)
                      ..|.++.|+|++..+++ ++ +     ..+.+||..+ ++....+.+|. ..+.+++|+|+|++|++++.  ++  .|.+
T Consensus        42 ~~v~~~~~spdg~~l~~-~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLL-NS-E-----GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             SCCEEEEECTTSSEEEE-EE-T-----TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             cceEeeEECCCCCEEEE-Ec-C-----CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            45788999999997744 32 3     2678888888 77776666663 67889999999999999983  33  4555


Q ss_pred             EeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEE-EEeCCCeEEEEeC--CCCcEEEEEecCCceEEEEEccCCcEEEEEE-
Q psy9319          79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIA-SGSEDLTIDIAHV--ESGKKVYDICIQAATFTVAWHPKQYLLAYAC-  154 (432)
Q Consensus        79 wd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~-sgs~dg~V~vwd~--~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s-  154 (432)
                      |++.++. ...+..+ ..+.+++|+|++++|+ +++.++.+.+|++  .++.......+...+.+++|+|+|.+|++++ 
T Consensus       115 ~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          115 LPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             EETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred             EECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec
Confidence            5555554 3444433 4589999999999887 6778998888885  4455444344777899999999999888776 


Q ss_pred             CCCeEEE
Q psy9319         155 DDKYDRK  161 (432)
Q Consensus       155 ~d~~I~v  161 (432)
                      .++.+.+
T Consensus       193 ~~~~~~i  199 (297)
T 2ojh_A          193 RTGQMQI  199 (297)
T ss_dssp             TTSSCEE
T ss_pred             CCCCccE
Confidence            4777333

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.50  E-value=1.9e-13  Score=141.95  Aligned_cols=167  Identities=9%  Similarity=0.065  Sum_probs=132.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc----CCcCEEEEEEcCC-CCEEEEEe-CCCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA----HPVTCICIEFDPT-GKYFAVGS-KDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~----h~~~V~~l~~spd-g~~L~sgs-~dg~I~i   78 (432)
                      .++..+.|+|++..+++++..+.     .+.+||..+++++..+..    |.+....+ ++|+ |..+++++ .|++|.+
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~-----~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v  397 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSN-----KVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL  397 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGT-----EEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred             cCccCceECCCCCEEEEEecCCC-----eEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence            45667899999998767765554     457788889999888874    65544444 5776 66667765 5899999


Q ss_pred             EeCCC-------CeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-------CCCeEEEEeCCCCcEE-EEE---------ec
Q psy9319          79 WDAAE-------LTCIRTFQRLDWPVRAISFSHDGALIASGS-------EDLTIDIAHVESGKKV-YDI---------CI  134 (432)
Q Consensus        79 wd~~~-------~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-------~dg~V~vwd~~~~~~~-~~~---------~~  134 (432)
                      ||+.+       ++++.++.+|.+.+..++++|+|++|++++       .+++|.+||+.+++.. ..+         .+
T Consensus       398 ~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~  477 (543)
T 1nir_A          398 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  477 (543)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             EEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence            99998       899999999998899999999999999987       2679999999999877 444         23


Q ss_pred             CCceEEEEEccCCcEEEEEE-----CCCeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         135 QAATFTVAWHPKQYLLAYAC-----DDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       135 ~~~V~~l~fspdg~~l~s~s-----~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      ...+..+.|+|+|..++++.     .++.        |.+||..+++++..+.+..
T Consensus       478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~--------i~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSA--------LVVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             CCEEEEEEECSSSSEEEEEEECCTTSCCE--------EEEEETTTTEEEEEECCTT
T ss_pred             CCceEeccCCCCCCEEEEEeecCCCCCCe--------EEEEECCCceEEEeecCCC
Confidence            56799999999999988774     3577        7888888888887776543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.50  E-value=1.3e-13  Score=128.72  Aligned_cols=148  Identities=12%  Similarity=0.125  Sum_probs=116.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCC-C
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS-KDALVSLWDAA-E   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs-~dg~I~iwd~~-~   83 (432)
                      .+..+.|+|++..++.++..|+.+.+|.+.   ..+ .....+..|...+.+++|+|+|..|++++ .++.+.||++. .
T Consensus       130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~  205 (297)
T 2ojh_A          130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMD---IDS-GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD  205 (297)
T ss_dssp             SEEEEEECTTSSEEEEEEEETTEEEEEEEE---TTT-CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CccceEECCCCCEEEEEECCCCceEEEEEE---CCC-CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC
Confidence            367788999999887677777765555443   333 34566778888999999999999887766 58899999876 4


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-----------CeEEEEeCCCCcEEEEE---ecCCceEEEEEccCCcE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSED-----------LTIDIAHVESGKKVYDI---CIQAATFTVAWHPKQYL  149 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-----------g~V~vwd~~~~~~~~~~---~~~~~V~~l~fspdg~~  149 (432)
                      +.....+..|...+.+++|+|+|.+|++++.+           +.|.+||+.+++.....   .+...+.+++|+|+|..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          206 GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence            55677777788889999999999999988765           56999999988764333   36778999999999999


Q ss_pred             EEEEECCC
Q psy9319         150 LAYACDDK  157 (432)
Q Consensus       150 l~s~s~d~  157 (432)
                      |++++.+.
T Consensus       286 l~~~~~~~  293 (297)
T 2ojh_A          286 FAYVRYFP  293 (297)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecc
Confidence            98887664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.50  E-value=8.2e-14  Score=148.43  Aligned_cols=157  Identities=14%  Similarity=0.076  Sum_probs=116.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE--   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~--   83 (432)
                      .|.+++|+|+ ..+++++  |     ..+.+||..+++.. .+..+...+.+++|||||+.|+++ .++.|++||+.+  
T Consensus        83 ~v~~~~~spd-~~~~~~~--~-----~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLFT--Q-----GGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG  152 (706)
T ss_dssp             CCEEEEETTT-TEEEEEE--T-----TEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT
T ss_pred             CceeEEECCC-CeEEEEE--C-----CEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc
Confidence            4788999999 5554442  2     57788888877654 445567778899999999999985 579999999998  


Q ss_pred             ---CeeEEEEeeCCCC--------------EEEEEEeeCCCEEEEEe---------------------------------
Q psy9319          84 ---LTCIRTFQRLDWP--------------VRAISFSHDGALIASGS---------------------------------  113 (432)
Q Consensus        84 ---~~~~~~~~~h~~~--------------V~~i~~spdg~~l~sgs---------------------------------  113 (432)
                         +........+...              +.+++|||||++|++++                                 
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               7765444433333              48899999999999987                                 


Q ss_pred             CCCeEEEEeCCCCcEEEEE---ecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCC
Q psy9319         114 EDLTIDIAHVESGKKVYDI---CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE  175 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~---~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~  175 (432)
                      .+..|++||+.++......   .+...+.+++|+|||+.|++++.++.-   ....+.+||+.++
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~~g  294 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAETG  294 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETTTC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECCCC
Confidence            4468999999988765544   245668999999999999988766510   0011666776666

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.49  E-value=1e-13  Score=147.88  Aligned_cols=155  Identities=10%  Similarity=0.009  Sum_probs=116.3

Q ss_pred             ccccccCCCCcceeeeeeecCCCc----eeEEEEeecCcceeeEEEc---cCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPK----QLDFKFKEHHKLEEQNILK---AHPVTCICIEFDPTGKYFAVGSKDALVSLW   79 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~----~~~i~~~d~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~sgs~dg~I~iw   79 (432)
                      |..++|+|++..+ ++++.+....    ...+.+||..+++. ..+.   +|...+.+++|||||+.|++++. +.|++|
T Consensus        63 v~~~~~SpDg~~l-~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           63 AIRYEISPDREYA-LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             CSEEEECTTSSEE-EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             cceEEECCCCCEE-EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            7889999999987 5555554443    36788999888865 3343   44455889999999999999886 799999


Q ss_pred             eCCCCeeEEEEeeCCCCE------------------EEEEEeeCCCEEEEEeCCC-------------------------
Q psy9319          80 DAAELTCIRTFQRLDWPV------------------RAISFSHDGALIASGSEDL-------------------------  116 (432)
Q Consensus        80 d~~~~~~~~~~~~h~~~V------------------~~i~~spdg~~l~sgs~dg-------------------------  116 (432)
                      |+.++........+...+                  .+++|||||+.|++++.|+                         
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            999888766555444333                  7899999999999887543                         


Q ss_pred             ---------eEEEEeCCCCcEEEEEe-c------CCceEEEEEccCCcEEEEEECC----CeEEEEeC
Q psy9319         117 ---------TIDIAHVESGKKVYDIC-I------QAATFTVAWHPKQYLLAYACDD----KYDRKQDC  164 (432)
Q Consensus       117 ---------~V~vwd~~~~~~~~~~~-~------~~~V~~l~fspdg~~l~s~s~d----~~I~vwd~  164 (432)
                               .|++||+.++.+...+. +      ...+.+++|+|||+++++.+..    ..|++||+
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence                     79999999888655554 2      4568899999999988776533    34455554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.48  E-value=8.9e-13  Score=126.08  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=92.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC-----CcCEEEEEEcCCCCEEEEEe---------
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH-----PVTCICIEFDPTGKYFAVGS---------   71 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h-----~~~V~~l~~spdg~~L~sgs---------   71 (432)
                      .+..++|+|++..+++++..+     ..+.+||..+++.+..+...     ...+.+++|+|+|++|++++         
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccc
Confidence            367889999998775665443     35778888888887766532     12567899999999988886         


Q ss_pred             ---CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE
Q psy9319          72 ---KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI  132 (432)
Q Consensus        72 ---~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~  132 (432)
                         .++.|.+||+.++..+..+.. ...+.+++|+|+|++|+++  ++.|.+||+.+++.+..+
T Consensus       110 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~  170 (337)
T 1pby_B          110 FEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred             ccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeee
Confidence               579999999999888777764 4567889999999988887  678999999887766544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.48  E-value=2.1e-12  Score=123.85  Aligned_cols=149  Identities=10%  Similarity=-0.037  Sum_probs=116.0

Q ss_pred             ccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCee-EE
Q psy9319          11 GLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-DALVSLWDAAELTC-IR   88 (432)
Q Consensus        11 ~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~iwd~~~~~~-~~   88 (432)
                      .|.+++..++++++.++     .+.+||..+++....+..+...+ +++|+|+|+++++++. ++.|.+||+.++.. ..
T Consensus         4 ~~~~~~~~~~v~~~~~~-----~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~   77 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLR-----RISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV   77 (331)
T ss_dssp             ---CCCCEEEEEEGGGT-----EEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred             eEcCCCCEEEEEecCCC-----eEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence            45666666667776655     56778888898888888777777 9999999997766665 88999999999887 77


Q ss_pred             EEeeCCCCEEEEEEeeCCCEEEEEeCCC---eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEE-ECCCe-EEEEe
Q psy9319          89 TFQRLDWPVRAISFSHDGALIASGSEDL---TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA-CDDKY-DRKQD  163 (432)
Q Consensus        89 ~~~~h~~~V~~i~~spdg~~l~sgs~dg---~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~-s~d~~-I~vwd  163 (432)
                      .+..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+.....+.+++|+|+|++++++ ..++. |.+|+
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence            7777776666699999999999555553   8999999999998888877778999999999855555 55566 77766


Q ss_pred             CC
Q psy9319         164 CG  165 (432)
Q Consensus       164 ~~  165 (432)
                      +.
T Consensus       158 ~~  159 (331)
T 3u4y_A          158 ID  159 (331)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.48  E-value=1.7e-12  Score=134.91  Aligned_cols=199  Identities=11%  Similarity=0.067  Sum_probs=143.3

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeec--CcceeeEEEccCCcCEEEEEEcC----CCCEEEEEeC-CCeEEEE
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH--HKLEEQNILKAHPVTCICIEFDP----TGKYFAVGSK-DALVSLW   79 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~--~~~~~~~~l~~h~~~V~~l~~sp----dg~~L~sgs~-dg~I~iw   79 (432)
                      +..+.|+|++..+++ ++.|     ..+.+||.  .+++.+..+..+ ..+..++|||    ||++|++++. +++|.+|
T Consensus       181 ~~~v~~spdg~~l~v-~~~d-----~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~  253 (543)
T 1nir_A          181 VHISRMSASGRYLLV-IGRD-----ARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAGAYWPPQFAIM  253 (543)
T ss_dssp             EEEEEECTTSCEEEE-EETT-----SEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred             cceEEECCCCCEEEE-ECCC-----CeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEEEccCCeEEEE
Confidence            678889999998744 4444     45778888  788888888754 5578999999    9999998884 8999999


Q ss_pred             eCCCCeeEEEEeeC-----------CCCEEEEEEeeCCCE-EEEEeCCCeEEEEeCCCCcEEE--EEecCCceEEEEEcc
Q psy9319          80 DAAELTCIRTFQRL-----------DWPVRAISFSHDGAL-IASGSEDLTIDIAHVESGKKVY--DICIQAATFTVAWHP  145 (432)
Q Consensus        80 d~~~~~~~~~~~~h-----------~~~V~~i~~spdg~~-l~sgs~dg~V~vwd~~~~~~~~--~~~~~~~V~~l~fsp  145 (432)
                      |..+++++.++..+           ...+.++.++|++.. +++...++.|.+||+.++..+.  .+.+...+.++.|+|
T Consensus       254 D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp  333 (543)
T 1nir_A          254 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS  333 (543)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT
T ss_pred             eccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC
Confidence            99999998887642           237899999997664 5566788999999998876544  555666788999999


Q ss_pred             CCcEEEEEE-CCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceecc-Cccee
Q psy9319         146 KQYLLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKK-KDYRV  223 (432)
Q Consensus       146 dg~~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~-~D~~l  223 (432)
                      +|+++++++ .+++        |.+||+.+++++..+..+.+..-.       +.-.+ ..|.... + +.+.+ .|.+|
T Consensus       334 dg~~l~va~~~~~~--------v~v~D~~tg~l~~~i~~g~~ph~g-------~g~~~-~~p~~g~-~-~~s~~~~d~~V  395 (543)
T 1nir_A          334 SHRYFMTAANNSNK--------VAVIDSKDRRLSALVDVGKTPHPG-------RGANF-VHPKYGP-V-WSTSHLGDGSI  395 (543)
T ss_dssp             TSCEEEEEEGGGTE--------EEEEETTTTEEEEEEECSSSBCCT-------TCEEE-EETTTEE-E-EEEEBSSSSEE
T ss_pred             CCCEEEEEecCCCe--------EEEEECCCCeEEEeeccCCCCCCC-------CCccc-CCCCCcc-E-EEeccCCCceE
Confidence            999877665 4777        777888888877776543221100       00000 1132222 1 34444 57899


Q ss_pred             ecccchh
Q psy9319         224 RADHFNK  230 (432)
Q Consensus       224 R~~d~~~  230 (432)
                      ++||...
T Consensus       396 ~v~d~~~  402 (543)
T 1nir_A          396 SLIGTDP  402 (543)
T ss_dssp             EEEECCT
T ss_pred             EEEEeCC
Confidence            9999876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.47  E-value=2.6e-12  Score=123.18  Aligned_cols=160  Identities=8%  Similarity=-0.018  Sum_probs=118.7

Q ss_pred             ccccCCCCcceeeeeeecCCCceeEEEEeecCccee-eEEEccCCcCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCC
Q psy9319           9 LLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE-QNILKAHPVTCICIEFDPTGKYFAVGSKDA---LVSLWDAAEL   84 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~sgs~dg---~I~iwd~~~~   84 (432)
                      .++|+|++..+++++..+.     .+.+||..+++. ...+..+..+..+++|+|+|++|+++..++   .|.+||+.++
T Consensus        44 ~~~~s~dg~~l~~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQ-----TLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             EEEECSSSCEEEEEESTTC-----EEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred             eEEEcCCCCEEEEEeCCCC-----eEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence            7899999986656654343     667788888887 777777777776699999999999655553   8999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEE-eCCCe-EEEEeCCCCcEE-----EEEecCCceEEEEEccCCcEEEEEE-CC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASG-SEDLT-IDIAHVESGKKV-----YDICIQAATFTVAWHPKQYLLAYAC-DD  156 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sg-s~dg~-V~vwd~~~~~~~-----~~~~~~~~V~~l~fspdg~~l~s~s-~d  156 (432)
                      ..+..+.. ...+.+++|+|+|++++++ ..++. |.+|++.....+     ..+.....+..++|+|+|+++++++ .+
T Consensus       119 ~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  197 (331)
T 3u4y_A          119 KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG  197 (331)
T ss_dssp             EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred             CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence            88877764 4567999999999865554 56678 999998764433     2223456689999999999666555 57


Q ss_pred             CeEEEEeCCceEEeecCCCce---eeeec
Q psy9319         157 KYDRKQDCGNLKVFGFLPEPI---KKRKR  182 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~~---~~~~~  182 (432)
                      +.        +.+||+.++..   +..+.
T Consensus       198 ~~--------v~v~d~~~~~~~~~~~~~~  218 (331)
T 3u4y_A          198 NS--------IGILETQNPENITLLNAVG  218 (331)
T ss_dssp             TE--------EEEEECSSTTSCEEEEEEE
T ss_pred             Ce--------EEEEECCCCcccceeeecc
Confidence            77        66666666665   55444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.46  E-value=9.6e-13  Score=126.15  Aligned_cols=153  Identities=12%  Similarity=0.038  Sum_probs=108.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecC--cce--eeEEEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH--KLE--EQNILKAHPVTCICIEFDPTGKYFAVGSK-DALVSLW   79 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~--~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~iw   79 (432)
                      ..+.+++|+|++..+++++..++     .+.+|+..  ++.  .+..+..+. .+.+++|+|+|++|++++. ++.|.+|
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEF-----RVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTT-----EEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCC-----eEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence            45678899999997755544334     45555554  333  444555544 7789999999998876665 8899999


Q ss_pred             eCC---CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCC-CcEEE----EEe--cCCceEEEEEccCCc
Q psy9319          80 DAA---ELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVES-GKKVY----DIC--IQAATFTVAWHPKQY  148 (432)
Q Consensus        80 d~~---~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~-~~~~~----~~~--~~~~V~~l~fspdg~  148 (432)
                      |+.   .+.....+. ....+.+++|+|+|.++++++ .++.|.+||+.+ +....    .+.  ....+..++|+|+|.
T Consensus       112 d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             EEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             ECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence            994   334444444 334688999999999888887 899999999987 65432    222  345788999999999


Q ss_pred             EEEEEE-CCCeEEEEeC
Q psy9319         149 LLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       149 ~l~s~s-~d~~I~vwd~  164 (432)
                      ++++++ .++.|.+||+
T Consensus       191 ~l~~~~~~~~~i~~~~~  207 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWEL  207 (343)
T ss_dssp             EEEEEETTTTEEEEEES
T ss_pred             EEEEEeCCCCEEEEEEe
Confidence            776665 7788555554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.44  E-value=5.5e-13  Score=142.71  Aligned_cols=150  Identities=9%  Similarity=-0.015  Sum_probs=115.8

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .|..++|+|++..+++++ .      ..+.+||..++.  ....+..|...+.+++|||||++|++++ ++.|++||+.+
T Consensus       110 ~v~~~~~SpDg~~l~~~~-~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPL-G------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             ESCCCEECTTSSEEEEEE-T------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             CcceeEECCCCCEEEEEe-C------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence            378899999999875543 2      578888887773  4556778888999999999999999988 46999999998


Q ss_pred             CeeEEEEeeCCCC----------------EEEEEEeeCCCEEEEEeCCC-------------------------------
Q psy9319          84 LTCIRTFQRLDWP----------------VRAISFSHDGALIASGSEDL-------------------------------  116 (432)
Q Consensus        84 ~~~~~~~~~h~~~----------------V~~i~~spdg~~l~sgs~dg-------------------------------  116 (432)
                      +........+...                +.+++|||||++|++++.|+                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            8766544444332                47899999999999987665                               


Q ss_pred             --eEEEEeCCC-CcEEEEE---ecCCceEEEEEccCCcEEEEEEC-----CCeEEEEeC
Q psy9319         117 --TIDIAHVES-GKKVYDI---CIQAATFTVAWHPKQYLLAYACD-----DKYDRKQDC  164 (432)
Q Consensus       117 --~V~vwd~~~-~~~~~~~---~~~~~V~~l~fspdg~~l~s~s~-----d~~I~vwd~  164 (432)
                        .|++||+.+ ++.....   .+...+.+++| |||++|++++.     +..|++||+
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~  319 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL  319 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence              899999998 8765543   25567899999 99999987764     345555554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.43  E-value=4.6e-13  Score=139.63  Aligned_cols=145  Identities=10%  Similarity=-0.085  Sum_probs=112.1

Q ss_pred             ccccCCCCccee-eeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC
Q psy9319           9 LLGLNPRPSLYQ-SSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD----ALVSLWDAAE   83 (432)
Q Consensus         9 ~l~~~p~~~~l~-~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d----g~I~iwd~~~   83 (432)
                      ...|+|++..++ ++++.|..      .+||..+++.......+.   .+++|||||++|++++.+    +.|++||+.+
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~------~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRV------ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCE------EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             eeeeCCCCCeEEEEecCCCCc------eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            457788876543 44333322      256766776655544433   789999999999988877    7899999998


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC--eEEEEeCCCCcEEEEEe-cCCceEEEE--------EccCCcEEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDL--TIDIAHVESGKKVYDIC-IQAATFTVA--------WHPKQYLLAY  152 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg--~V~vwd~~~~~~~~~~~-~~~~V~~l~--------fspdg~~l~s  152 (432)
                      +... .+..|.+.+.+++|||||+.|++++.++  .|++||+.+++.. .+. +...+..++        |+|||.++++
T Consensus       185 g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  262 (582)
T 3o4h_A          185 GGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVV  262 (582)
T ss_dssp             CCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred             CCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEE
Confidence            8754 6778888999999999999999888888  8999999999887 444 555566666        9999999999


Q ss_pred             EECCCeEEEEeC
Q psy9319         153 ACDDKYDRKQDC  164 (432)
Q Consensus       153 ~s~d~~I~vwd~  164 (432)
                      ++.++.+++|++
T Consensus       263 ~~~~g~~~l~~~  274 (582)
T 3o4h_A          263 ARREGRSAVFID  274 (582)
T ss_dssp             EEETTEEEEEET
T ss_pred             EEcCCcEEEEEE
Confidence            999999777776

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.43  E-value=6e-12  Score=121.03  Aligned_cols=161  Identities=12%  Similarity=-0.046  Sum_probs=116.3

Q ss_pred             ccccccCCCCcceeeeeee-----c-CCCceeEEEEeecCcce---eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEE
Q psy9319           7 IPLLGLNPRPSLYQSSVLT-----D-ISPKQLDFKFKEHHKLE---EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVS   77 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~-----D-~~~~~~~i~~~d~~~~~---~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~   77 (432)
                      +..+.|+|++..++++...     + -......+.+||..+++   .+..+..+ ..+.+++|+|+|+ +++++.  .|.
T Consensus        94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~-l~~~~~--~i~  169 (349)
T 1jmx_B           94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS-LYVAGP--DIY  169 (349)
T ss_dssp             SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC-EEEESS--SEE
T ss_pred             ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc-EEEccC--cEE
Confidence            6788999999887555422     0 00001367888887743   33444433 4688999999999 555543  499


Q ss_pred             EEeCCCCeeEEEEeeCC---------------------------------------------------------------
Q psy9319          78 LWDAAELTCIRTFQRLD---------------------------------------------------------------   94 (432)
Q Consensus        78 iwd~~~~~~~~~~~~h~---------------------------------------------------------------   94 (432)
                      +||+.++..+..+..+.                                                               
T Consensus       170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (349)
T 1jmx_B          170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  249 (349)
T ss_dssp             EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence            99999887766554321                                                               


Q ss_pred             -----CCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceE
Q psy9319          95 -----WPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLK  168 (432)
Q Consensus        95 -----~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~  168 (432)
                           ..+.+++|+| +|.+++++  ++.|.+||+.+++.+..+.....+.+++|+|+|.+|++++.++.        +.
T Consensus       250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--------v~  319 (349)
T 1jmx_B          250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND--------LA  319 (349)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE--------EE
T ss_pred             cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCe--------EE
Confidence                 1355677889 99999888  88999999999998888876677889999999998888888888        66


Q ss_pred             EeecCCCceeeee
Q psy9319         169 VFGFLPEPIKKRK  181 (432)
Q Consensus       169 vwd~~~~~~~~~~  181 (432)
                      +||+.+++.+..+
T Consensus       320 v~d~~~~~~~~~~  332 (349)
T 1jmx_B          320 VFNPDTLEKVKNI  332 (349)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEeccccceeeee
Confidence            6666666655554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.43  E-value=2.9e-12  Score=123.21  Aligned_cols=119  Identities=13%  Similarity=0.060  Sum_probs=88.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC------cCEEEEEEcCCCCEEEEEeCC------
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP------VTCICIEFDPTGKYFAVGSKD------   73 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~------~~V~~l~~spdg~~L~sgs~d------   73 (432)
                      .+..++|+|++..+++++..+     ..+.+||..+++....+..+.      ..+.+++|+|+|++|++++.+      
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  118 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND  118 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSS
T ss_pred             CCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccc
Confidence            456788999998665554333     357788888888887776432      236789999999999988865      


Q ss_pred             ------CeEEEEeCCCCe---eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319          74 ------ALVSLWDAAELT---CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus        74 ------g~I~iwd~~~~~---~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                            +.|.+||+.++.   .+..+. +...+.+++|+|+|+ +++++.  .|.+||+.+++.+..+.
T Consensus       119 ~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          119 HYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEEC
T ss_pred             ccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccc
Confidence                  899999998743   334444 444688999999999 555544  49999999988776654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.42  E-value=7.2e-12  Score=130.57  Aligned_cols=201  Identities=12%  Similarity=-0.076  Sum_probs=127.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeec-CcceeeEEEccCCcCEEEEEEcCCCC--EEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEH-HKLEEQNILKAHPVTCICIEFDPTGK--YFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~-~~~~~~~~l~~h~~~V~~l~~spdg~--~L~sgs~dg~I~iwd~   81 (432)
                      +.+..+.|+|+ . ++.++..+.....+.+..++. ..+... .+..+. .+...+|+|+|+  .+++++.+ .+.+||+
T Consensus        65 ~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~  139 (582)
T 3o4h_A           65 NSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATED-RVALYAL  139 (582)
T ss_dssp             SEECEECTTCS-E-EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSS-CEEEEEE
T ss_pred             cccccccCCCC-e-EEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCC-CceEEEc
Confidence            35778899998 4 445544423334455554554 122222 443332 234668888875  34444444 4559999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC----CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSED----LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d----g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      .++........+ .  .+++|||||++|++++.+    +.|++||+.+++......+...+..++|||||+.|+++..++
T Consensus       140 ~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~  216 (582)
T 3o4h_A          140 DGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAR  216 (582)
T ss_dssp             ETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSS
T ss_pred             cCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCC
Confidence            988765544433 3  789999999999988876    789999999988765555778899999999999999888888


Q ss_pred             --eEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         158 --YDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       158 --~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                        .        |.+||+.++... .+.++.......+...   ...-...|++..   ++....|..+++|+.
T Consensus       217 ~~~--------i~~~d~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~spdg~~---~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          217 EAR--------LVTVDPRDGSVE-DLELPSKDFSSYRPTA---ITWLGYLPDGRL---AVVARREGRSAVFID  274 (582)
T ss_dssp             CEE--------EEEECTTTCCEE-ECCCSCSHHHHHCCSE---EEEEEECTTSCE---EEEEEETTEEEEEET
T ss_pred             eeE--------EEEEcCCCCcEE-EccCCCcChhhhhhcc---ccceeEcCCCcE---EEEEEcCCcEEEEEE
Confidence              5        677787777766 5555443222111000   000002344422   455666777777776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.41  E-value=9e-12  Score=121.43  Aligned_cols=151  Identities=16%  Similarity=0.078  Sum_probs=103.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcce-------e------eEEEccCCcCEEEEEEcCCCCEEEEEe-
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE-------E------QNILKAHPVTCICIEFDPTGKYFAVGS-   71 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~-------~------~~~l~~h~~~V~~l~~spdg~~L~sgs-   71 (432)
                      ++.++.|+|++..+++++..+..+     .+|+.....       .      ......+...+.+++|+|+|+++++++ 
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v-----~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  230 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQI-----HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE  230 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEE-----EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             cceEEEECCCCCEEEEEeCCCCEE-----EEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence            346789999998776665444443     444333222       1      112223445678999999999887777 


Q ss_pred             CCCeEEEEeCCCCee--EEEEe---eCCCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCC--CCc--EEEEEecCCceEE
Q psy9319          72 KDALVSLWDAAELTC--IRTFQ---RLDWPVRAISFSHDGALIASGSE--DLTIDIAHVE--SGK--KVYDICIQAATFT  140 (432)
Q Consensus        72 ~dg~I~iwd~~~~~~--~~~~~---~h~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~--~~~--~~~~~~~~~~V~~  140 (432)
                      .++.|.+||+.++..  +..+.   .+...+.+++|+|||++|++++.  ++.|.+|++.  ++.  .+..+.....+.+
T Consensus       231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~  310 (361)
T 3scy_A          231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRN  310 (361)
T ss_dssp             TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCE
T ss_pred             CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCce
Confidence            689999999987754  23332   23345789999999999877665  4899999985  455  3333444456889


Q ss_pred             EEEccCCcEEEEEE-CCCeEEE
Q psy9319         141 VAWHPKQYLLAYAC-DDKYDRK  161 (432)
Q Consensus       141 l~fspdg~~l~s~s-~d~~I~v  161 (432)
                      ++|+|+|++|++++ .++.|.+
T Consensus       311 ~~~spdg~~l~~~~~~~~~v~v  332 (361)
T 3scy_A          311 FIITPNGKYLLVACRDTNVIQI  332 (361)
T ss_dssp             EEECTTSCEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEECCCCCEEE
Confidence            99999999988887 5677333

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.41  E-value=1.9e-12  Score=144.49  Aligned_cols=150  Identities=13%  Similarity=0.009  Sum_probs=123.3

Q ss_pred             cccccccC-CCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCc-CEEEEEEcCCCCEEEEEeCCCeEE-EEeCC
Q psy9319           6 FIPLLGLN-PRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPV-TCICIEFDPTGKYFAVGSKDALVS-LWDAA   82 (432)
Q Consensus         6 ~I~~l~~~-p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~sgs~dg~I~-iwd~~   82 (432)
                      .+..+.|+ |++..+++++       ...+.+|+..++.. ..+..|.+ .+.+++|+ ||..|++++.++.+. +||+.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-------~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~  367 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-------RGQAFIQDVSGTYV-LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR  367 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-------TTEEEEECTTSSBE-EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred             ccceeeecCCCCCEEEEEE-------cCEEEEEcCCCCce-EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence            57889999 9998774443       23567777766654 34677777 89999999 999999999888898 99998


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-ecCCceEEEEEccCCcEEEEEECCC----
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDK----  157 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~----  157 (432)
                      ++... .+.+|...+.+++|||||++|++++.++.|++||+.+++....+ .+...+.+++|+|||++|++++.++    
T Consensus       368 ~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~  446 (1045)
T 1k32_A          368 TGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET  446 (1045)
T ss_dssp             TCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             CCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccc
Confidence            77654 44478889999999999999999999999999999999988777 4778889999999999999887654    


Q ss_pred             ------eEEEEeCC
Q psy9319         158 ------YDRKQDCG  165 (432)
Q Consensus       158 ------~I~vwd~~  165 (432)
                            .|++||+.
T Consensus       447 ~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          447 DGYVMQAIHVYDME  460 (1045)
T ss_dssp             CSCCEEEEEEEETT
T ss_pred             cCCCCCeEEEEECC
Confidence                  77777764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.41  E-value=1.9e-12  Score=137.86  Aligned_cols=153  Identities=11%  Similarity=0.097  Sum_probs=114.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCc-----ceeeEEEccCCcC--------------EEEEEEcCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK-----LEEQNILKAHPVT--------------CICIEFDPTGK   65 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~-----~~~~~~l~~h~~~--------------V~~l~~spdg~   65 (432)
                      ..+..+.|+|++..++.+  .|     ..+.+|+..+     ++.......+...              +.+++|||||+
T Consensus       121 ~~~~~~~~SpdG~~la~~--~~-----~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~  193 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYV--RN-----HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS  193 (706)
T ss_dssp             TCCTTCEECTTSSEEEEE--ET-----TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred             ccccCCcCCCCCCEEEEE--EC-----CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence            456789999999887443  33     4678888877     7665544444333              47899999999


Q ss_pred             EEEEEe---------------------------------CCCeEEEEeCCCCeeEEEEe--eCCCCEEEEEEeeCCCEEE
Q psy9319          66 YFAVGS---------------------------------KDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIA  110 (432)
Q Consensus        66 ~L~sgs---------------------------------~dg~I~iwd~~~~~~~~~~~--~h~~~V~~i~~spdg~~l~  110 (432)
                      +|++++                                 .+..|.+||+.++.......  .|...+.+++|+|||++|+
T Consensus       194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence            999987                                 44679999999887654432  4667899999999999999


Q ss_pred             EEeCCC-----eEEEEeCCCCcEEEEE-e--cCC---ceEEEEEcc--CCcEEEEEECCCeEEEEeC
Q psy9319         111 SGSEDL-----TIDIAHVESGKKVYDI-C--IQA---ATFTVAWHP--KQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       111 sgs~dg-----~V~vwd~~~~~~~~~~-~--~~~---~V~~l~fsp--dg~~l~s~s~d~~I~vwd~  164 (432)
                      +++.++     .|++||+.++.....+ .  ...   .+.+++|+|  +|.++++++.|+.+++|++
T Consensus       274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~  340 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLY  340 (706)
T ss_dssp             EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEE
T ss_pred             EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEE
Confidence            887765     8999999999444333 2  222   246789999  9999999989988666653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.40  E-value=1.4e-11  Score=118.05  Aligned_cols=155  Identities=11%  Similarity=0.013  Sum_probs=106.7

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCc-ceeeE----EEcc-CCcCEEEEEEcCCCCEEEEEe-CCCe
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK-LEEQN----ILKA-HPVTCICIEFDPTGKYFAVGS-KDAL   75 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~-~~~~~----~l~~-h~~~V~~l~~spdg~~L~sgs-~dg~   75 (432)
                      +...+.++.|+|++..+++++..|..     +.+|+..+ ++...    .+.. ....+.+++|+|+|.++++++ .++.
T Consensus       127 ~~~~~~~~~~s~dg~~l~~~~~~~~~-----v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~  201 (343)
T 1ri6_A          127 GLDGCHSANISPDNRTLWVPALKQDR-----ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS  201 (343)
T ss_dssp             CCTTBCCCEECTTSSEEEEEEGGGTE-----EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCceEEEECCCCCEEEEecCCCCE-----EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE
Confidence            34457889999999877666545654     45555555 43322    2333 345788999999999776554 7899


Q ss_pred             EEEEeCCC--Cee--EEEEee---C---CCCEEEEEEeeCCCEEEEE-eCCCeEEEEeCC--CC--cEEEEEecCCceEE
Q psy9319          76 VSLWDAAE--LTC--IRTFQR---L---DWPVRAISFSHDGALIASG-SEDLTIDIAHVE--SG--KKVYDICIQAATFT  140 (432)
Q Consensus        76 I~iwd~~~--~~~--~~~~~~---h---~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~--~~--~~~~~~~~~~~V~~  140 (432)
                      |.+|++..  +..  ...+..   .   ...+.+++|+|+|++|+.+ ..++.|.+||+.  ++  ..+..+.....+.+
T Consensus       202 i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  281 (343)
T 1ri6_A          202 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG  281 (343)
T ss_dssp             EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC
T ss_pred             EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccce
Confidence            99999953  433  222221   1   2357789999999888754 478999999998  33  34444554455889


Q ss_pred             EEEccCCcEEEEEE-CCCeEEEE
Q psy9319         141 VAWHPKQYLLAYAC-DDKYDRKQ  162 (432)
Q Consensus       141 l~fspdg~~l~s~s-~d~~I~vw  162 (432)
                      ++|+|+|.+|++++ .++.|.+|
T Consensus       282 ~~~s~dg~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          282 FNVDHSGKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             EEECTTSSEEEEECTTTCEEEEE
T ss_pred             EEECCCCCEEEEecCCCCeEEEE
Confidence            99999999888887 57885554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.39  E-value=3.9e-12  Score=141.93  Aligned_cols=153  Identities=13%  Similarity=0.065  Sum_probs=121.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEE-EeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFK-FKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~-~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .+..+.|+ ++..+ ++++.+     ..+. +|+..++.. ..+.+|...+.+++|||||++|++++.++.|++||+.++
T Consensus       339 ~~~~~~~s-dg~~l-~~~s~~-----~~l~~~~d~~~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg  410 (1045)
T 1k32_A          339 RYVRRGGD-TKVAF-IHGTRE-----GDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  410 (1045)
T ss_dssp             EEEEECSS-SEEEE-EEEETT-----EEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             eEEeeeEc-CCCeE-EEEECC-----CceEEEEECCCCCc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence            45667788 77665 443332     2444 667766554 345588889999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC----------eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDL----------TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg----------~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s  154 (432)
                      .....+.+|.+.+.+++|||||++|++++.++          .|++||+.++.......+...+.+++|+|+|.+|++++
T Consensus       411 ~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          411 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEe
Confidence            88877778999999999999999999887643          89999999887433334777789999999999999999


Q ss_pred             CCCeEEEEeCCc
Q psy9319         155 DDKYDRKQDCGN  166 (432)
Q Consensus       155 ~d~~I~vwd~~~  166 (432)
                      .++...+|+...
T Consensus       491 ~~~~~~~~~~~~  502 (1045)
T 1k32_A          491 YRSLDPSPDRVV  502 (1045)
T ss_dssp             SCCCCCEECSSS
T ss_pred             cccCCcCcchhc
Confidence            988877776543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.38  E-value=1.1e-11  Score=120.08  Aligned_cols=155  Identities=10%  Similarity=0.015  Sum_probs=105.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPTGKYFAVGS-KDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs-~dg~I~iwd~   81 (432)
                      .....++|+|++. +++++..+   ....+.+|+..++.  .+..+..+...+.+++|+|+|++|++++ .++.|.+|++
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEET---TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEccCCe-EEEEEecC---CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            3456789999998 53444321   12455666655544  4555556777888999999999888887 6799999999


Q ss_pred             C-CCe--eEEEEeeC---------CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC-CCcEEEE--Ee--cCCceEEEEEc
Q psy9319          82 A-ELT--CIRTFQRL---------DWPVRAISFSHDGALIASGSEDLTIDIAHVE-SGKKVYD--IC--IQAATFTVAWH  144 (432)
Q Consensus        82 ~-~~~--~~~~~~~h---------~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~-~~~~~~~--~~--~~~~V~~l~fs  144 (432)
                      . .+.  .+..+...         ...+.+++|+|+|++++++..++.|.+||+. ++.....  +.  ....+..++|+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            6 332  23333211         1248899999999966666678999999998 5543322  22  33467889999


Q ss_pred             cCCcEEEEE-ECCCeEEEEe
Q psy9319         145 PKQYLLAYA-CDDKYDRKQD  163 (432)
Q Consensus       145 pdg~~l~s~-s~d~~I~vwd  163 (432)
                      |+|++++++ ..++.|.+|+
T Consensus       196 pdg~~l~v~~~~~~~v~v~~  215 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLK  215 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEE
Confidence            999976665 4567744444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.37  E-value=3.1e-11  Score=116.82  Aligned_cols=151  Identities=15%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecC-cceee--EEEccC-CcCEEEEEEcCCCCEEEE-EeCCCeEEEEe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH-KLEEQ--NILKAH-PVTCICIEFDPTGKYFAV-GSKDALVSLWD   80 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~L~s-gs~dg~I~iwd   80 (432)
                      .+.++.|+|++. ++++...+.     .+.+|+.. ++...  ..+..+ ...+..++|+|||++|++ +..++.|.+|+
T Consensus       142 ~~~~~~~spdg~-l~v~~~~~~-----~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  215 (347)
T 3hfq_A          142 HIHYTDLTPDNR-LAVIDLGSD-----KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLK  215 (347)
T ss_dssp             CEEEEEECTTSC-EEEEETTTT-----EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CceEEEECCCCc-EEEEeCCCC-----EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            467799999999 546654444     34555554 34322  222332 236788999999996655 56688999999


Q ss_pred             CCC--Cee--EEEEeeCC------CCEEEEEEeeCCCEEE-EEeCCCeEEEEeCCC-C--cEEEEEe-cCCceEEEEEcc
Q psy9319          81 AAE--LTC--IRTFQRLD------WPVRAISFSHDGALIA-SGSEDLTIDIAHVES-G--KKVYDIC-IQAATFTVAWHP  145 (432)
Q Consensus        81 ~~~--~~~--~~~~~~h~------~~V~~i~~spdg~~l~-sgs~dg~V~vwd~~~-~--~~~~~~~-~~~~V~~l~fsp  145 (432)
                      +..  +..  +..+....      ..+..++|+|||++|+ ++..++.|.+||+.. +  ..+..+. +...+..++|+|
T Consensus       216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp  295 (347)
T 3hfq_A          216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP  295 (347)
T ss_dssp             EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT
T ss_pred             ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC
Confidence            874  543  22333222      3488999999999875 555789999999973 2  3344444 355688999999


Q ss_pred             CCcEEEEEECC-CeEEEE
Q psy9319         146 KQYLLAYACDD-KYDRKQ  162 (432)
Q Consensus       146 dg~~l~s~s~d-~~I~vw  162 (432)
                      +|++|++++.+ +.|.+|
T Consensus       296 dg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          296 TEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             TSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEcCCCcEEEE
Confidence            99998888765 774444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.36  E-value=1.9e-12  Score=138.31  Aligned_cols=140  Identities=14%  Similarity=0.171  Sum_probs=106.4

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCc---CEEEEEEcCCCCEEEEEeC---------CCe
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPV---TCICIEFDPTGKYFAVGSK---------DAL   75 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~---~V~~l~~spdg~~L~sgs~---------dg~   75 (432)
                      ..+.|+|++.++ +++ .|+     .+.+||..+++....+.+|..   .+.+++|||||++|++++.         ++.
T Consensus        19 ~~~~~s~dg~~~-~~~-~d~-----~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           19 FFPNWISGQEYL-HQS-ADN-----NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCCEESSSSEEE-EEC-TTS-----CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             CccEECCCCeEE-EEc-CCC-----CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence            578899999533 433 343     577888888888877776654   4889999999999998876         789


Q ss_pred             EEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCce---------------
Q psy9319          76 VSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAAT---------------  138 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V---------------  138 (432)
                      |++||+.++..+... .....+.+++|||||+.|++++ ++.|++||+.++.+.....  +...|               
T Consensus        92 i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           92 YYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             EEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred             EEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence            999999988762101 1135688999999999999886 7799999999888765332  22222               


Q ss_pred             --EEEEEccCCcEEEEEECC
Q psy9319         139 --FTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       139 --~~l~fspdg~~l~s~s~d  156 (432)
                        .+++|||||+.|++++.|
T Consensus       170 ~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          170 TKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             SSCCEEECTTSSEEEEEEEE
T ss_pred             CcccEEECCCCCEEEEEEEC
Confidence              489999999999998765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.32  E-value=8.4e-11  Score=115.19  Aligned_cols=146  Identities=8%  Similarity=-0.067  Sum_probs=113.9

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~   87 (432)
                      ....|+|++..++.++..++.   +.+.+||..+++......++...+.+++|||||+.|+.++.++.|++||+.++...
T Consensus        39 ~~~~~SpDg~~l~~~~~~~g~---~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~  115 (388)
T 3pe7_A           39 YQKCFTRDGSKLLFGGAFDGP---WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN  115 (388)
T ss_dssp             TSCCBCTTSCEEEEEECTTSS---CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             cCccCCCCCCEEEEEEcCCCC---ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            347899999988555443543   35667888888877777777666667789999999999999999999999999877


Q ss_pred             EEEeeCCCCEEEEE--EeeCCCEEEEEe----------------------CCCeEEEEeCCCCcEEEEEecCCceEEEEE
Q psy9319          88 RTFQRLDWPVRAIS--FSHDGALIASGS----------------------EDLTIDIAHVESGKKVYDICIQAATFTVAW  143 (432)
Q Consensus        88 ~~~~~h~~~V~~i~--~spdg~~l~sgs----------------------~dg~V~vwd~~~~~~~~~~~~~~~V~~l~f  143 (432)
                      ..+..+...+....  ++|++.+++...                      .+..|.+||+.+++......+...+..++|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~  195 (388)
T 3pe7_A          116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIY  195 (388)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred             eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEE
Confidence            66666666555444  488999887432                      346899999999987766667778999999


Q ss_pred             cc-CCcEEEEEECC
Q psy9319         144 HP-KQYLLAYACDD  156 (432)
Q Consensus       144 sp-dg~~l~s~s~d  156 (432)
                      +| +|..|++++.+
T Consensus       196 sp~dg~~l~~~~~~  209 (388)
T 3pe7_A          196 RPYDDSTVAFCHEG  209 (388)
T ss_dssp             ETTEEEEEEEEECS
T ss_pred             CCCCCCEEEEEEec
Confidence            99 99999888764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.30  E-value=1.3e-11  Score=132.76  Aligned_cols=148  Identities=13%  Similarity=0.062  Sum_probs=112.8

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcC-----EEEEEEcCCCCEEEEEeCC--------
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVT-----CICIEFDPTGKYFAVGSKD--------   73 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~-----V~~l~~spdg~~L~sgs~d--------   73 (432)
                      ...+.|+|++..+ +++  |+     .|.+|+..++++...+.+|...     ...++|||||++|++++.+        
T Consensus        19 ~~~~~w~~dg~~~-~~~--~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           19 LYSLRWISDHEYL-YKQ--EN-----NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCEEECSSSEEE-EEE--TT-----EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             ccccEECCCCcEE-EEc--CC-----cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            5678999999755 443  43     6788898899988888887643     2347899999999998876        


Q ss_pred             -CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCce------------
Q psy9319          74 -ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAAT------------  138 (432)
Q Consensus        74 -g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V------------  138 (432)
                       +.+.+||+.++.+. .+..|.+.+..++|||||+.||.++ ++.|++||+.++.......  +...+            
T Consensus        91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             ceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence             56779999998754 4666788899999999999999885 6799999999887654322  21112            


Q ss_pred             -----EEEEEccCCcEEEEEECCCe-EEEEeC
Q psy9319         139 -----FTVAWHPKQYLLAYACDDKY-DRKQDC  164 (432)
Q Consensus       139 -----~~l~fspdg~~l~s~s~d~~-I~vwd~  164 (432)
                           ..+.|||||+.|++++.|.+ +.+|++
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence                 34899999999998875544 666643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.27  E-value=8.2e-11  Score=115.33  Aligned_cols=152  Identities=9%  Similarity=-0.043  Sum_probs=104.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecC-cceeeEEEccC-CcCEEEEEEcCCCCE--EEEEe---------
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH-KLEEQNILKAH-PVTCICIEFDPTGKY--FAVGS---------   71 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~-~~~~~~~l~~h-~~~V~~l~~spdg~~--L~sgs---------   71 (432)
                      ..+..++++|++..++ +++.+      .+.+|+.. +++........ .+.+.+++|+|+|++  +++++         
T Consensus        40 ~~~~~~a~spdg~~l~-~~~~~------~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           40 EPISWMTFDHERKNIY-GAAMK------KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             CCCSEEEECTTSSEEE-EEEBT------EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCcEEEECCCCCEEE-EEccc------eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            3567889999998663 44443      56666654 66554332211 123456899999984  44543         


Q ss_pred             ----CCCeEEEEeCC-CCeeEEEEe----eCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCC-CCcEE--EEEe---cC
Q psy9319          72 ----KDALVSLWDAA-ELTCIRTFQ----RLDWPVRAISFSHDGALIASGS-EDLTIDIAHVE-SGKKV--YDIC---IQ  135 (432)
Q Consensus        72 ----~dg~I~iwd~~-~~~~~~~~~----~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~-~~~~~--~~~~---~~  135 (432)
                          .++++.+|++. .+.....+.    .+...+.+++|+|||++|++++ .++.|.+||+. +++..  ..+.   +.
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence                68999999997 465543333    2456799999999999888776 46899999998 77653  2333   25


Q ss_pred             CceEEEEEccCCcEEEEEEC-CCeEEEEe
Q psy9319         136 AATFTVAWHPKQYLLAYACD-DKYDRKQD  163 (432)
Q Consensus       136 ~~V~~l~fspdg~~l~s~s~-d~~I~vwd  163 (432)
                      ..+..++|+|+|+++++++. ++.|.+|+
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            56899999999999888775 67744443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.26  E-value=7e-11  Score=124.76  Aligned_cols=155  Identities=8%  Similarity=-0.093  Sum_probs=114.3

Q ss_pred             CcccccccCCCCcceeeeeeecCC-----CceeEEEEeecCc------ceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDIS-----PKQLDFKFKEHHK------LEEQNILK-AHPVTCICIEFDPTGKYFAVGSK   72 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~-----~~~~~i~~~d~~~------~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~   72 (432)
                      ..+..+.|+|++..++++ +.|..     .....+.+|+..+      +. ...+. .+...+.+++|||||++|+.++.
T Consensus       130 ~~~~~~~~spDg~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCM-AEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             EEEEEEEEETTTTEEEEE-EEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             ccccCcEECCCCCEEEEE-EecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            345788999999987444 44421     2346788899877      44 45566 66677889999999999988775


Q ss_pred             C--------CeEEEEeCC-CC---eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC--eEEEEeCCCCcEEEEEecCCc-
Q psy9319          73 D--------ALVSLWDAA-EL---TCIRTFQRLDWPVRAISFSHDGALIASGSEDL--TIDIAHVESGKKVYDICIQAA-  137 (432)
Q Consensus        73 d--------g~I~iwd~~-~~---~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg--~V~vwd~~~~~~~~~~~~~~~-  137 (432)
                      +        ..|.+||+. ++   .......+|...+.+++|+|||+++++++.++  .|++||+.+++......+... 
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence            5        379999998 56   44444455678899999999999777877787  777888777776544432221 


Q ss_pred             --------eEEEEEccCCcEEEEEECCCeEEEE
Q psy9319         138 --------TFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus       138 --------V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                              +.+++|+|++.++++++. +.+++|
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~  319 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG  319 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence                    457899999999999988 886666

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.23  E-value=7.9e-10  Score=106.80  Aligned_cols=168  Identities=13%  Similarity=0.033  Sum_probs=124.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCce-------------------eEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQ-------------------LDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTG   64 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~-------------------~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg   64 (432)
                      +.+..++++|++.++ ++...+..+..                   ..+.+||..+++.+..+. ++......++++|+|
T Consensus        24 ~~v~~va~d~~G~l~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVSGVALDSKNNLV-IFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEEEEEECTTCCEE-EEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CCceEEEECCCCCEE-EEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            457889999999877 55555533221                   358889988888776664 445678999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCe-eEEEEe---------eCCCCEEEEEEee-CCCEEEEEe-CCCeEEEEeCCCCcEEEEE
Q psy9319          65 KYFAVGSKDALVSLWDAAELT-CIRTFQ---------RLDWPVRAISFSH-DGALIASGS-EDLTIDIAHVESGKKVYDI  132 (432)
Q Consensus        65 ~~L~sgs~dg~I~iwd~~~~~-~~~~~~---------~h~~~V~~i~~sp-dg~~l~sgs-~dg~V~vwd~~~~~~~~~~  132 (432)
                      .++++.+.++.|.+||..... .+..+.         ++.....+++++| ++.++++.+ .++.|.+|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986442 455552         3445789999999 788888886 699999999 577777776


Q ss_pred             ec-C----------CceEEEEEccC-CcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         133 CI-Q----------AATFTVAWHPK-QYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       133 ~~-~----------~~V~~l~fspd-g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      .. .          ..+..++++|+ +.++++...++.        |.+|+..+|..+..+.
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~--------I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR--------IQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE--------EEEEETTTCCEEEEEC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE--------EEEEECCCCcEEEEEe
Confidence            42 1          22789999998 777777777888        6666666666666553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.23  E-value=1e-10  Score=125.77  Aligned_cols=142  Identities=11%  Similarity=0.097  Sum_probs=102.6

Q ss_pred             cccCCCCcceeeeeeecCCCc----eeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319          10 LGLNPRPSLYQSSVLTDISPK----QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D~~~~----~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      +.|||++..+ +.++.+..+.    ..++.+||..+++.. .+..|.+.+..++|||||+.||.++ ++.|++||+.++.
T Consensus        67 ~~~Spdg~~l-~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~  143 (740)
T 4a5s_A           67 YSISPDGQFI-LLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP  143 (740)
T ss_dssp             EEECTTSSEE-EEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             eEECCCCCEE-EEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc
Confidence            6779999987 4445543332    367889999888755 4777888999999999999999886 6899999998877


Q ss_pred             eEEE-EeeCCCCE-----------------EEEEEeeCCCEEEEEeCCC-------------------------------
Q psy9319          86 CIRT-FQRLDWPV-----------------RAISFSHDGALIASGSEDL-------------------------------  116 (432)
Q Consensus        86 ~~~~-~~~h~~~V-----------------~~i~~spdg~~l~sgs~dg-------------------------------  116 (432)
                      .... ..++...+                 .++.|||||+.|+.++.|.                               
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            5432 22333223                 3489999999999875321                               


Q ss_pred             -----eEEEEeCCC---C---cEEEEEe------cCCceEEEEEccCCcEEEEEE
Q psy9319         117 -----TIDIAHVES---G---KKVYDIC------IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       117 -----~V~vwd~~~---~---~~~~~~~------~~~~V~~l~fspdg~~l~s~s  154 (432)
                           .|++||+.+   +   .......      +...+..++|+|||+.++...
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~  278 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL  278 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEe
Confidence                 588899988   7   3333221      445588999999999766654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.23  E-value=1.9e-11  Score=130.47  Aligned_cols=153  Identities=13%  Similarity=0.031  Sum_probs=107.6

Q ss_pred             ccccccCCCCcceeeeeeecCC---CceeEEEEeecCcceee--EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDIS---PKQLDFKFKEHHKLEEQ--NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~---~~~~~i~~~d~~~~~~~--~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      +.+++|||++..++.+...+..   .....+.+||..+++.+  ..+   ...+.+++|||||+.|++++ ++.|++||+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence            6788999999987444332211   12467889998888762  222   25688899999999999986 789999999


Q ss_pred             CCCeeEEEE-eeCCCCE-----------------EEEEEeeCCCEEEEEeCCC---------------------------
Q psy9319          82 AELTCIRTF-QRLDWPV-----------------RAISFSHDGALIASGSEDL---------------------------  116 (432)
Q Consensus        82 ~~~~~~~~~-~~h~~~V-----------------~~i~~spdg~~l~sgs~dg---------------------------  116 (432)
                      .++...... .++...|                 .+++|||||++|++++.|.                           
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~  217 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA  217 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence            888765322 2232222                 4899999999999988552                           


Q ss_pred             -------eEEEEeCCCCcEE--EEE-------ecCCceEEEEEccCCcEEEEEECCC----eEEEEe
Q psy9319         117 -------TIDIAHVESGKKV--YDI-------CIQAATFTVAWHPKQYLLAYACDDK----YDRKQD  163 (432)
Q Consensus       117 -------~V~vwd~~~~~~~--~~~-------~~~~~V~~l~fspdg~~l~s~s~d~----~I~vwd  163 (432)
                             .|++||+.++...  ..+       .+...+.+++|+||+.++++....+    .|.+||
T Consensus       218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence                   7889999888652  111       1455689999999988777754322    355566

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.21  E-value=1.4e-10  Score=122.54  Aligned_cols=140  Identities=12%  Similarity=0.013  Sum_probs=102.2

Q ss_pred             CCCCcc-eeeeeeecCCCceeEEEEeecC-cc-eeeEEEcc-----CCcCEEEEEEcCCCCEEEEEeCC----------C
Q psy9319          13 NPRPSL-YQSSVLTDISPKQLDFKFKEHH-KL-EEQNILKA-----HPVTCICIEFDPTGKYFAVGSKD----------A   74 (432)
Q Consensus        13 ~p~~~~-l~~s~s~D~~~~~~~i~~~d~~-~~-~~~~~l~~-----h~~~V~~l~~spdg~~L~sgs~d----------g   74 (432)
                      ||++.. ++.+  .+...   .|.+++.. ++ .....+..     |...+.+++|||||+.|++++.+          .
T Consensus        87 SPDg~~~la~~--~~~~~---~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           87 RPAGGPLLVFT--HFGDQ---RLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             CSSSSCEEEEE--BTTTC---CEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred             ecCCCeEEEEE--ECCCC---eEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence            499987 5333  23333   34445543 12 44556666     67788999999999999998877          5


Q ss_pred             eEEEEeCCC------CeeEEEEe-eCCCCEEEEEEeeCCCEEEEEeCC--------CeEEEEeCC-CC---cEEEEEe-c
Q psy9319          75 LVSLWDAAE------LTCIRTFQ-RLDWPVRAISFSHDGALIASGSED--------LTIDIAHVE-SG---KKVYDIC-I  134 (432)
Q Consensus        75 ~I~iwd~~~------~~~~~~~~-~h~~~V~~i~~spdg~~l~sgs~d--------g~V~vwd~~-~~---~~~~~~~-~  134 (432)
                      .|++||+.+      +.. ..+. .+...+.+++|||||++|+.++.+        ..|++||+. ++   ....... +
T Consensus       162 ~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             EEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            899999987      544 4555 566778889999999999988754        479999998 56   3333333 4


Q ss_pred             CCceEEEEEccCCcEEEEEECCCe
Q psy9319         135 QAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       135 ~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ...+..++|+|||+++++++.++.
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSS
T ss_pred             CceEcceEECCCCeEEEEECCCCC
Confidence            678999999999998777777773

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.20  E-value=3.2e-10  Score=111.04  Aligned_cols=154  Identities=13%  Similarity=0.057  Sum_probs=105.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecC-cceee--EEEc--cCCcCEEEEEEcCCCCEEEEEeC-CCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHH-KLEEQ--NILK--AHPVTCICIEFDPTGKYFAVGSK-DALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~-~~~~~--~~l~--~h~~~V~~l~~spdg~~L~sgs~-dg~I~i   78 (432)
                      ..+..+.|+|++..++++...+     ..+.+|+.. +++..  ..+.  .|...+..++|+|+|++|++++. ++.|.+
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v  219 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTA-----NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCC-----CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence            4677899999998764443222     246667765 55542  3343  24567899999999999888775 689999


Q ss_pred             EeCC--CCeeE---EEEee-------CCC------CEEEEE-EeeCCCEEEEEeCC-C-----eEEEEeCC-CCcEEEE-
Q psy9319          79 WDAA--ELTCI---RTFQR-------LDW------PVRAIS-FSHDGALIASGSED-L-----TIDIAHVE-SGKKVYD-  131 (432)
Q Consensus        79 wd~~--~~~~~---~~~~~-------h~~------~V~~i~-~spdg~~l~sgs~d-g-----~V~vwd~~-~~~~~~~-  131 (432)
                      |++.  ++...   ..+..       |..      .+.+++ |+|||++|++++.+ +     .|.+|++. ++..... 
T Consensus       220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~  299 (365)
T 1jof_A          220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence            9765  55542   12221       122      488999 99999988876643 2     89999996 5665432 


Q ss_pred             --Ee-cCCceEEEEEcc---CCcEEEEEECC-CeEEEEe
Q psy9319         132 --IC-IQAATFTVAWHP---KQYLLAYACDD-KYDRKQD  163 (432)
Q Consensus       132 --~~-~~~~V~~l~fsp---dg~~l~s~s~d-~~I~vwd  163 (432)
                        .. +...+..++|+|   +|.+|++++.+ +.|.+|+
T Consensus       300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence              32 344577899999   89999998765 7744444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.17  E-value=2.6e-09  Score=100.31  Aligned_cols=149  Identities=8%  Similarity=0.031  Sum_probs=108.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc--cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK--AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      +.+..++++|++.++ ++...+     ..+.+|+. ++..+..+.  ++...+.+++++|+|.++++.+.++.|.+||..
T Consensus       121 ~~~~~i~~~~~g~l~-v~~~~~-----~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          121 QHPRGVTVDNKGRII-VVECKV-----MRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             SCEEEEEECTTSCEE-EEETTT-----TEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEeCCCCEE-EEECCC-----CEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence            456778889988765 443322     24566664 455555554  455678999999999988888889999999985


Q ss_pred             CCeeEEEEeeC--CCCEEEEEEeeCCCEEEEEeCCC-eEEEEeCCCCcEEEEEe-cC--CceEEEEEccCCcEEEEEECC
Q psy9319          83 ELTCIRTFQRL--DWPVRAISFSHDGALIASGSEDL-TIDIAHVESGKKVYDIC-IQ--AATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        83 ~~~~~~~~~~h--~~~V~~i~~spdg~~l~sgs~dg-~V~vwd~~~~~~~~~~~-~~--~~V~~l~fspdg~~l~s~s~d  156 (432)
                       +..+..+..+  ...+.+++++|+|.++++...++ .|.+||. ++..+..+. +.  ..+.+++|+|+|.++++ +.+
T Consensus       194 -g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~  270 (286)
T 1q7f_A          194 -GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD  270 (286)
T ss_dssp             -CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred             -CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence             5566666543  35789999999999888888776 9999995 566666665 22  23778999999987776 678


Q ss_pred             CeEEEEe
Q psy9319         157 KYDRKQD  163 (432)
Q Consensus       157 ~~I~vwd  163 (432)
                      +.|++|+
T Consensus       271 ~~v~v~~  277 (286)
T 1q7f_A          271 YRLYIYR  277 (286)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            8854444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.15  E-value=1.2e-09  Score=105.30  Aligned_cols=140  Identities=11%  Similarity=0.123  Sum_probs=96.6

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-------------
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-------------   73 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-------------   73 (432)
                      +..+.|+|++..++.. +.+..-....+.+++..+++.......+ . +.+++|+|||+.|+.++.+             
T Consensus        61 ~~~~~~SpDg~~la~~-~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           61 ATMPRISPDGKKIAFM-RANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             CEEEEECTTSSEEEEE-EEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             CCCeEECCCCCEEEEE-EeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            4567899999987443 4432223456777888777665554443 4 9999999999998887642             


Q ss_pred             --------------CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC---------eEEEEeCCCCcEEE
Q psy9319          74 --------------ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDL---------TIDIAHVESGKKVY  130 (432)
Q Consensus        74 --------------g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg---------~V~vwd~~~~~~~~  130 (432)
                                    ..|.+||+.++..+..+.. . .+..++|+||| ++++++.++         .|+++|  +++...
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~  212 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK  212 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE
Confidence                          5799999998877455555 3 78899999999 777776542         455556  555433


Q ss_pred             EEecCCceEEEEEccCCcEEEEEECCC
Q psy9319         131 DICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       131 ~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ...+ ..+..+  +|+|+.|++++.++
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~  236 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPE  236 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCS
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccc
Confidence            3334 445444  99999888887553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=1.2e-09  Score=107.96  Aligned_cols=139  Identities=16%  Similarity=0.113  Sum_probs=104.4

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcce---------e-eEEEccCCcCEEEEEEcCCCCEEEEEeCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE---------E-QNILKAHPVTCICIEFDPTGKYFAVGSKDAL   75 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~---------~-~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~   75 (432)
                      .++.+++++...++ ++++.|      .+.+|+..+..         . ......+.+ |+.++|  |+.+|+++ .++.
T Consensus        39 ~~nlLais~~~gll-~a~~~~------~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLF-VAASGS------KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTTTEE-EEEETT------EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred             cccEEEEcCCCCEE-EEeCCC------EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence            47889999999887 454444      23345433322         1 112234566 999999  89999998 7899


Q ss_pred             EEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEEC
Q psy9319          76 VSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      |.+||+.+.........|...+.++.+.+.  .+++++.||.|.+||+.++....   +...|.+++|||+|  ++.|..
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEET
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEc
Confidence            999999876666667778888988877654  38889999999999999887653   45679999999999  678999


Q ss_pred             CCeEEEE
Q psy9319         156 DKYDRKQ  162 (432)
Q Consensus       156 d~~I~vw  162 (432)
                      ||.+++|
T Consensus       181 dg~i~~~  187 (388)
T 1xip_A          181 DRSFQSF  187 (388)
T ss_dssp             TSCEEEE
T ss_pred             CCcEEEE
Confidence            9994444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.13  E-value=2.8e-09  Score=104.60  Aligned_cols=163  Identities=8%  Similarity=0.013  Sum_probs=116.9

Q ss_pred             ccccCCCCcceeeeeeecCCC----ceeEEEEeecCcceeeEEEccC------CcCEEEEEEcCCCCEEEEEeC--CCeE
Q psy9319           9 LLGLNPRPSLYQSSVLTDISP----KQLDFKFKEHHKLEEQNILKAH------PVTCICIEFDPTGKYFAVGSK--DALV   76 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~----~~~~i~~~d~~~~~~~~~l~~h------~~~V~~l~~spdg~~L~sgs~--dg~I   76 (432)
                      .++++|++..+.++...+...    ....+.+||..+++.+..+...      ......++|+|||++|++++.  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            689999999886765433221    2345788998888888877642      234567899999999988864  5789


Q ss_pred             EEEeCCCCeeEEE-Eee-------------------------------CCCCE---------------------------
Q psy9319          77 SLWDAAELTCIRT-FQR-------------------------------LDWPV---------------------------   97 (432)
Q Consensus        77 ~iwd~~~~~~~~~-~~~-------------------------------h~~~V---------------------------   97 (432)
                      .+||+.+++.+.. +..                               ..+.+                           
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK  213 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence            9999887665544 100                               00000                           


Q ss_pred             ----------E---------------------------------EEEEeeCCCEEEEEeC-----------CCeEEEEeC
Q psy9319          98 ----------R---------------------------------AISFSHDGALIASGSE-----------DLTIDIAHV  123 (432)
Q Consensus        98 ----------~---------------------------------~i~~spdg~~l~sgs~-----------dg~V~vwd~  123 (432)
                                .                                 .++|+|++..++.+..           .+.|.+||+
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence                      0                                 1567888777766543           358999999


Q ss_pred             CCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCC--ceeeee
Q psy9319         124 ESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE--PIKKRK  181 (432)
Q Consensus       124 ~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~--~~~~~~  181 (432)
                      .+++.+..+.... +.+++|+|+|++|++++. +.        |.+||..++  +.+..+
T Consensus       294 ~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~--------v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          294 KTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GN--------VNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SC--------EEEEECSSSSCEEEEEE
T ss_pred             CCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-Ce--------EEEEECCCCcceeeEEe
Confidence            9999999998555 999999999999998876 77        777777777  666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.13  E-value=5e-09  Score=98.34  Aligned_cols=150  Identities=8%  Similarity=0.027  Sum_probs=108.1

Q ss_pred             ccccccc-CCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGL-NPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~-~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+..+++ .+++.++++....+     ..+.+|+ .++..+..+. .+...+.+++++|+|.++++.+.++.|.+||.. 
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~-----~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-  150 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPT-----HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-  150 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGG-----CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CceEEEEEcCCCeEEEEcCCCC-----CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence            4566777 46666553331112     3466777 4666666664 344678999999999988888888999999975 


Q ss_pred             CeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC---CceEEEEEccCCcEEEEEECCC-
Q psy9319          84 LTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ---AATFTVAWHPKQYLLAYACDDK-  157 (432)
Q Consensus        84 ~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~---~~V~~l~fspdg~~l~s~s~d~-  157 (432)
                      +..+..+.  .+...+.+++++|+|.++++.+.++.|.+||. ++..+..+...   ..+..++++|+|.++++...++ 
T Consensus       151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~  229 (286)
T 1q7f_A          151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF  229 (286)
T ss_dssp             SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence            55555554  34457899999999998888788999999997 56666666532   5688999999999888887775 


Q ss_pred             eEEEEe
Q psy9319         158 YDRKQD  163 (432)
Q Consensus       158 ~I~vwd  163 (432)
                      .|.+||
T Consensus       230 ~i~~~~  235 (286)
T 1q7f_A          230 NLTIFT  235 (286)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            844443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.11  E-value=3.1e-10  Score=111.03  Aligned_cols=147  Identities=5%  Similarity=-0.112  Sum_probs=104.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      +..++|+|++..++.++..++.   ..+.+++..+++......++.....++.|||||+.|+.++.++.|.+||+.++..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~---~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGN---RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSS---CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eecCcCCCCCCEEEEEEecCCC---ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence            6778999999987555444333   3456778777765444333333333478999999999999999999999998876


Q ss_pred             EEEEeeCCCCEEE-------------------EEEeeCCCEEEEE-----eCCCeEEEEeCCCCcEEEEEecCCceEEEE
Q psy9319          87 IRTFQRLDWPVRA-------------------ISFSHDGALIASG-----SEDLTIDIAHVESGKKVYDICIQAATFTVA  142 (432)
Q Consensus        87 ~~~~~~h~~~V~~-------------------i~~spdg~~l~sg-----s~dg~V~vwd~~~~~~~~~~~~~~~V~~l~  142 (432)
                      ...+..+......                   +.|+|++..++.+     ..+..|++||+.+++......+...+..+.
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~  194 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI  194 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence            6555544442222                   3456777665544     356789999999988776666777899999


Q ss_pred             Ecc-CCcEEEEEECC
Q psy9319         143 WHP-KQYLLAYACDD  156 (432)
Q Consensus       143 fsp-dg~~l~s~s~d  156 (432)
                      |+| ++..|+.++.+
T Consensus       195 ~sp~dg~~l~~~~~~  209 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEG  209 (396)
T ss_dssp             EETTEEEEEEEEECS
T ss_pred             ECCCCCCEEEEEecC
Confidence            999 88877777643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.10  E-value=7.9e-09  Score=100.41  Aligned_cols=154  Identities=7%  Similarity=-0.015  Sum_probs=98.3

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCc--ce--eeEEEccCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHK--LE--EQNILKAHPVTCICIEFDPTGKYFAVGS-KDALVSLWD   80 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~--~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs-~dg~I~iwd   80 (432)
                      ....++|+|++..+++++ .+.. ....+.+|+...  +.  .+..+..+......+++  +|++|++++ .++.|.+|+
T Consensus        51 ~p~~l~~spdg~~l~~~~-~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           51 NPSYLIPSADGKFVYSVN-EFSK-DQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             CCCSEEECTTSSEEEEEE-CCSS-TTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred             CCceEEECCCCCEEEEEE-ccCC-CCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence            346789999998774443 3310 123444444332  43  34445555566777887  788777766 578999999


Q ss_pred             CCCCeeEE----EEe--e--------CCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcE--------------EEE
Q psy9319          81 AAELTCIR----TFQ--R--------LDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKK--------------VYD  131 (432)
Q Consensus        81 ~~~~~~~~----~~~--~--------h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~--------------~~~  131 (432)
                      +.....+.    .+.  +        +...+.+++|+|+|+++++++ .++.|.+|++.....              ...
T Consensus       127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~  206 (361)
T 3scy_A          127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK  206 (361)
T ss_dssp             BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred             eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence            87432221    111  1        123468899999999776655 588999998875431              112


Q ss_pred             EecCCceEEEEEccCCcEEEEEE-CCCeEEEEe
Q psy9319         132 ICIQAATFTVAWHPKQYLLAYAC-DDKYDRKQD  163 (432)
Q Consensus       132 ~~~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd  163 (432)
                      ......+..++|+|+|+++++++ .++.|.+||
T Consensus       207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  239 (361)
T 3scy_A          207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR  239 (361)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred             cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence            23556688999999999888777 578844444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.08  E-value=6.8e-09  Score=99.59  Aligned_cols=142  Identities=13%  Similarity=0.064  Sum_probs=109.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|..+.|+|++..+ +..+.+..+..|        .+.....+.++...+.+++|+|+|.+++++..++.|.+||..++
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~   76 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSA-VPIISESELQTI--------TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK   76 (333)
T ss_dssp             CCCCBCCSCGGGGCS-SCCCCGGGSCEE--------ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             cccceeeecCCccce-eEEeecccCccc--------ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            457889999988766 444566666655        23455667777777899999999998888888999999999988


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC----CeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEEC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSED----LTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d----g~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ........+...+.+++|+|+|.+++++..+    +.|.+||..++.....+.   ....+.+++++|+|.++++...
T Consensus        77 ~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            7655444567789999999999988877766    689999998887653332   3456889999999988876653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.08  E-value=2.1e-09  Score=114.85  Aligned_cols=156  Identities=9%  Similarity=0.033  Sum_probs=110.4

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCe-----------
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDAL-----------   75 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~-----------   75 (432)
                      +..+.|||++..++.+.+ +.......|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.           
T Consensus       127 ~~~~~~SPDg~~la~~~~-~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLS-ASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEECTTSSEEEEEEE-ETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEECCCCCEEEEEEc-CCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            567889999998854444 33334568899999998876543222 22567999999999999888766           


Q ss_pred             -----EEEEeCCCCee--EEEEee--CCCCEEEEEEeeCCCEEEEEeC-----CCeEEEEeCCC------Cc-EEEEEe-
Q psy9319          76 -----VSLWDAAELTC--IRTFQR--LDWPVRAISFSHDGALIASGSE-----DLTIDIAHVES------GK-KVYDIC-  133 (432)
Q Consensus        76 -----I~iwd~~~~~~--~~~~~~--h~~~V~~i~~spdg~~l~sgs~-----dg~V~vwd~~~------~~-~~~~~~-  133 (432)
                           |++|++.++..  ...+..  |...+.++.|||||++|+.++.     +..|++||+.+      +. ....+. 
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence                 99999987763  233332  4556889999999999987764     56899999986      53 234443 


Q ss_pred             cCCceEEEEEccCCcEEEEEECCC----eEEEEeCC
Q psy9319         134 IQAATFTVAWHPKQYLLAYACDDK----YDRKQDCG  165 (432)
Q Consensus       134 ~~~~V~~l~fspdg~~l~s~s~d~----~I~vwd~~  165 (432)
                      +...+.. .|+|+|..|+..+..+    .|.+||+.
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~  319 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT  319 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            4444544 5889998877776533    46677664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.06  E-value=3e-09  Score=102.67  Aligned_cols=151  Identities=10%  Similarity=0.005  Sum_probs=110.0

Q ss_pred             cccccccCC-CCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC----------CcCEEEEEEcCC-CCEEEEEeCC
Q psy9319           6 FIPLLGLNP-RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH----------PVTCICIEFDPT-GKYFAVGSKD   73 (432)
Q Consensus         6 ~I~~l~~~p-~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h----------~~~V~~l~~spd-g~~L~sgs~d   73 (432)
                      ....++++| ++.++ ++.+.    ....|.+|+ .++..+..+...          ......++++|+ |.++++...+
T Consensus       144 ~P~~ia~~~~~g~ly-v~d~~----~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVF-VSDGY----CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             SEEEEEECTTTCCEE-EEECS----SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEeCCCCeEE-EEeCC----CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            456789999 66665 44321    123456666 466777666432          234889999998 7777888889


Q ss_pred             CeEEEEeCCCCeeEEEEe--eCCCCEEEEEEeeCCCEEEE-------EeCCCeEEEEeCCCCcEEEEEe----cCCceEE
Q psy9319          74 ALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIAS-------GSEDLTIDIAHVESGKKVYDIC----IQAATFT  140 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~--~h~~~V~~i~~spdg~~l~s-------gs~dg~V~vwd~~~~~~~~~~~----~~~~V~~  140 (432)
                      +.|++||..++..+..+.  .+...+.+++|+| +..+++       .+.+..|.+||+.+++.+..+.    +...+..
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence            999999999888888774  3556789999999 333333       2334589999999999988873    4556899


Q ss_pred             EEEccCCcEEEEEECCCeEEEEe
Q psy9319         141 VAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       141 l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ++++|+|.++++...++.|++|+
T Consensus       297 ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          297 IVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EEECTTSEEEEEESSSCCEEEEE
T ss_pred             EEECCCCCEEEEECCCCEEEEEe
Confidence            99999998888888888844444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.06  E-value=7.1e-09  Score=99.84  Aligned_cols=140  Identities=11%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             cccccccCCCCcceeeeee-ecC--CCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC---C--eEE
Q psy9319           6 FIPLLGLNPRPSLYQSSVL-TDI--SPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD---A--LVS   77 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s-~D~--~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d---g--~I~   77 (432)
                      .+....+  ++..++.+.. .+.  ......+.+|+..+++.. .+    ..+.+++|||||+.|+.++.+   +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            3455555  6666533322 221  112566778888777543 33    567899999999999887754   3  488


Q ss_pred             EEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---------------------------CeEEEEeCCCCcEEE
Q psy9319          78 LWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED---------------------------LTIDIAHVESGKKVY  130 (432)
Q Consensus        78 iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---------------------------g~V~vwd~~~~~~~~  130 (432)
                      +||+.++........ .. +.+++|+|||+.|+.++.+                           ..|++||+.+++.+.
T Consensus        89 ~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            889988776554443 34 9999999999999887632                           579999999888744


Q ss_pred             EEecCCceEEEEEccCCcEEEEEECC
Q psy9319         131 DICIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       131 ~~~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      .+... .+..++|+|+| ++++++.+
T Consensus       167 ~l~~~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          167 EFEKP-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             EEEEE-TTCEEEEETTE-EEEEEECC
T ss_pred             eecCC-CcccccCCCCe-EEEEEecc
Confidence            44434 78899999999 77777654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.05  E-value=1.4e-08  Score=97.40  Aligned_cols=153  Identities=8%  Similarity=-0.009  Sum_probs=107.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC----CeEEEEeC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD----ALVSLWDA   81 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d----g~I~iwd~   81 (432)
                      .+..+.|+|++.++ +++..+     ..+.+|+..+++.......+...+.+++|+|+|.+++++..+    +.|.+||.
T Consensus        46 ~~~~~~~~~~g~l~-~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           46 QLEGLNFDRQGQLF-LLDVFE-----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             CEEEEEECTTSCEE-EEETTT-----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             cccCcEECCCCCEE-EEECCC-----CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            34677888888855 443332     356778877776655554567789999999999988877766    68999999


Q ss_pred             CCCeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeC------CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEE
Q psy9319          82 AELTCIRTFQ--RLDWPVRAISFSHDGALIASGSE------DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA  153 (432)
Q Consensus        82 ~~~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~------dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~  153 (432)
                      .++.....+.  .+...+.+++++|+|.++++...      .+.|..+|..++...........+..++|+|+|..|+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE
Confidence            8776543333  23457999999999988877654      356777887666654443444557889999999866554


Q ss_pred             -ECCCeEEEEeC
Q psy9319         154 -CDDKYDRKQDC  164 (432)
Q Consensus       154 -s~d~~I~vwd~  164 (432)
                       +.++.|.+||+
T Consensus       200 ~~~~~~i~~~d~  211 (333)
T 2dg1_A          200 ETTANRLHRIAL  211 (333)
T ss_dssp             EGGGTEEEEEEE
T ss_pred             eCCCCeEEEEEe
Confidence             45677544443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.01  E-value=3.6e-09  Score=112.82  Aligned_cols=155  Identities=8%  Similarity=-0.098  Sum_probs=108.9

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee-E-EEccCCcCEEEEEEcCCCCEEEEEeCCCe--------
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ-N-ILKAHPVTCICIEFDPTGKYFAVGSKDAL--------   75 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~-~-~l~~h~~~V~~l~~spdg~~L~sgs~dg~--------   75 (432)
                      .+..+.|||++..++.+.+.++ .....|++||+.+++.+ . .+...  ....++|+|||+.|+.++.|..        
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G-~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNA-ADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETT-CSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCC-CceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCccccC
Confidence            3577899999998855554443 34568999999888764 2 12111  1267899999999999988776        


Q ss_pred             -----EEEEeCCCCee--EEEE--eeCCCCEEEEEEeeCCCEEEEEeCCC----eEEEEeCCCCcEEEEEecCCceEEEE
Q psy9319          76 -----VSLWDAAELTC--IRTF--QRLDWPVRAISFSHDGALIASGSEDL----TIDIAHVESGKKVYDICIQAATFTVA  142 (432)
Q Consensus        76 -----I~iwd~~~~~~--~~~~--~~h~~~V~~i~~spdg~~l~sgs~dg----~V~vwd~~~~~~~~~~~~~~~V~~l~  142 (432)
                           |++|++.++..  ...+  ..|...+.++.|||||++|+.++.++    .|++||..++.......+...+....
T Consensus       199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~  278 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVH  278 (695)
T ss_dssp             GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEE
T ss_pred             CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEE
Confidence                 99999987762  2233  34556789999999999998877665    78888776666555455555666666


Q ss_pred             EccCCcEEEEEEC----CCeEEEEeCC
Q psy9319         143 WHPKQYLLAYACD----DKYDRKQDCG  165 (432)
Q Consensus       143 fspdg~~l~s~s~----d~~I~vwd~~  165 (432)
                      | |+|. ++..+.    ++.|.+||+.
T Consensus       279 ~-~~g~-l~~~s~~~~~~~~l~~~d~~  303 (695)
T 2bkl_A          279 A-WKDR-FYVLTDEGAPRQRVFEVDPA  303 (695)
T ss_dssp             E-ETTE-EEEEECTTCTTCEEEEEBTT
T ss_pred             e-cCCc-EEEEECCCCCCCEEEEEeCC
Confidence            7 6666 554443    4677777763

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.00  E-value=1.3e-08  Score=96.09  Aligned_cols=152  Identities=11%  Similarity=-0.083  Sum_probs=107.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .....+.|+|++..++.+...++     .+..|+..++  ...+..+...+.+++++|+|.++++...++.|.+||..++
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~-----~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQN-----RTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGT-----EEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             ccccCCeEeCCCCEEEEEeCCCC-----EEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            44567888998874435544433     4567777666  6667777888999999999998888777789999999877


Q ss_pred             eeEEEEeeC----CCCEEEEEEeeCCCEEEEEe-----------------CCCeEEEEeCCCCcEEEEEecCCceEEEEE
Q psy9319          85 TCIRTFQRL----DWPVRAISFSHDGALIASGS-----------------EDLTIDIAHVESGKKVYDICIQAATFTVAW  143 (432)
Q Consensus        85 ~~~~~~~~h----~~~V~~i~~spdg~~l~sgs-----------------~dg~V~vwd~~~~~~~~~~~~~~~V~~l~f  143 (432)
                      .........    ...+.+++++|+|+++++.+                 ..+.|..++.. +...........+..++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~  179 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAF  179 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEE
Confidence            754433222    23466899999999888732                 13467777765 554444445666789999


Q ss_pred             ccCCcEEEEEECCCeEEEEeC
Q psy9319         144 HPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       144 spdg~~l~s~s~d~~I~vwd~  164 (432)
                      +|+|..+++.+.++.|.+||+
T Consensus       180 s~dg~~lv~~~~~~~i~~~~~  200 (296)
T 3e5z_A          180 LPSGNLLVSDTGDNATHRYCL  200 (296)
T ss_dssp             CTTSCEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEeCCCCeEEEEEE
Confidence            999998876677788554443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.99  E-value=6.6e-09  Score=101.57  Aligned_cols=117  Identities=11%  Similarity=-0.044  Sum_probs=92.5

Q ss_pred             eecCcceeeEEEccCCcCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCE
Q psy9319          37 KEHHKLEEQNILKAHPVTCIC-----IEFDPTGKYFAVGSK-DA--LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGAL  108 (432)
Q Consensus        37 ~d~~~~~~~~~l~~h~~~V~~-----l~~spdg~~L~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~  108 (432)
                      .+..++..+..+..|...+..     .+|||||+.|+.++. ++  .|.+||+.++.......++...+.++.|||||+.
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            367788888889888876666     889999999998887 66  4888999988877666666655657789999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcEEEEEec-CCceEEE--EEccCCcEEEEE
Q psy9319         109 IASGSEDLTIDIAHVESGKKVYDICI-QAATFTV--AWHPKQYLLAYA  153 (432)
Q Consensus       109 l~sgs~dg~V~vwd~~~~~~~~~~~~-~~~V~~l--~fspdg~~l~s~  153 (432)
                      |+.++.++.|++||+.+++....... ...+...  .++|++.+++..
T Consensus        95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~  142 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGI  142 (388)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccc
Confidence            99999999999999999988766653 3334333  348999988753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.98  E-value=1.9e-08  Score=94.89  Aligned_cols=149  Identities=9%  Similarity=-0.001  Sum_probs=116.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC-cCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP-VTCICIEFDPTGKYFAVGSK-DALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~sgs~-dg~I~iwd~~~   83 (432)
                      .+.++.++|++.+++ +  .+     ..+..+|. +++.+..+..+. ..+.++.+.|+|.++++.+. ++.|..+|. .
T Consensus        38 ~~~~~~~~pdG~ilv-s--~~-----~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~  107 (276)
T 3no2_A           38 ECNSVAATKAGEILF-S--YS-----KGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-K  107 (276)
T ss_dssp             CCCEEEECTTSCEEE-E--CB-----SEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-T
T ss_pred             CCcCeEECCCCCEEE-e--CC-----CCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-C
Confidence            467788999998774 3  22     24677887 889998888753 57889999999999999887 778888886 5


Q ss_pred             CeeEEEEee------CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCC
Q psy9319          84 LTCIRTFQR------LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        84 ~~~~~~~~~------h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      |+.+..+..      +......+++.++|.++++.+.++.|.+||.. |+.+..+.....+.++.+.++|.++++++.++
T Consensus       108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~  186 (276)
T 3no2_A          108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAH  186 (276)
T ss_dssp             SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTS
T ss_pred             CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCC
Confidence            777666642      11245566788999999999999999999998 99999988666777888899999999988888


Q ss_pred             eEEEEeCC
Q psy9319         158 YDRKQDCG  165 (432)
Q Consensus       158 ~I~vwd~~  165 (432)
                      .|..+|..
T Consensus       187 ~v~~~d~~  194 (276)
T 3no2_A          187 CFVQLNLE  194 (276)
T ss_dssp             EEEEECTT
T ss_pred             eEEEEeCc
Confidence            84444443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.95  E-value=2e-08  Score=94.82  Aligned_cols=148  Identities=13%  Similarity=0.058  Sum_probs=102.6

Q ss_pred             CcccccccCCCCcceeee---eeec--------CCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSS---VLTD--------ISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD   73 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s---~s~D--------~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d   73 (432)
                      +.+..+.++|++.++++.   ++.+        .......+..++.. + .+..+..+......++|+|+|+.|++.+.+
T Consensus       115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~  192 (296)
T 3e5z_A          115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGD  192 (296)
T ss_dssp             CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTT
T ss_pred             CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCC
Confidence            345678899999877432   1110        00011234444443 3 344555666778999999999988777888


Q ss_pred             CeEEEEeCC-CCee---EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEE-ccCCc
Q psy9319          74 ALVSLWDAA-ELTC---IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW-HPKQY  148 (432)
Q Consensus        74 g~I~iwd~~-~~~~---~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~f-spdg~  148 (432)
                      +.|.+|++. ++..   ...+..+.+.+.+++++++|+++++.  ++.|.+||.. ++.+..+.....+.+++| +|++.
T Consensus       193 ~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~  269 (296)
T 3e5z_A          193 NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGR  269 (296)
T ss_dssp             TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSC
T ss_pred             CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCC
Confidence            999999986 4544   23333345567789999999976666  7889999986 777777763333899999 58999


Q ss_pred             EEEEEECCC
Q psy9319         149 LLAYACDDK  157 (432)
Q Consensus       149 ~l~s~s~d~  157 (432)
                      .|++++.++
T Consensus       270 ~L~v~t~~~  278 (296)
T 3e5z_A          270 TLYMTVSTE  278 (296)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEcCCe
Confidence            888888765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.95  E-value=1.1e-08  Score=100.40  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=108.5

Q ss_pred             CCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCC
Q psy9319          15 RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK----------DALVSLWDAAEL   84 (432)
Q Consensus        15 ~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~----------dg~I~iwd~~~~   84 (432)
                      ++..++++......+....+.+||..+++.+..+..+..+  .++|+|||+++++++.          +++|.+||+.++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            4444434433222234457888999999988888877665  8999999999998863          668999999998


Q ss_pred             eeEEEEeeC------CCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCCCCcEEEE-EecCCceEEEEEccCC-cEEEEEE
Q psy9319          85 TCIRTFQRL------DWPVRAISFSHDGALIASGSE--DLTIDIAHVESGKKVYD-ICIQAATFTVAWHPKQ-YLLAYAC  154 (432)
Q Consensus        85 ~~~~~~~~h------~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~~~~~~~~-~~~~~~V~~l~fspdg-~~l~s~s  154 (432)
                      +.+..+...      ......++|+|||++|++++.  +++|.+||+.+++.+.. +...+. ..+.+.|++ ..+++.+
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEEC
Confidence            888877643      245678999999999998873  68999999999988887 654433 335667766 6777888


Q ss_pred             CCCeEEEEe
Q psy9319         155 DDKYDRKQD  163 (432)
Q Consensus       155 ~d~~I~vwd  163 (432)
                      .||.+.+|+
T Consensus       171 ~dg~~~~v~  179 (361)
T 2oiz_A          171 GDGGLLTIN  179 (361)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCcEEEEE
Confidence            899844444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.93  E-value=1.2e-08  Score=100.94  Aligned_cols=131  Identities=11%  Similarity=0.036  Sum_probs=102.9

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |..++|  ++..+ +.+ .+     ..+.+||+.+......+..|..++.++.+.+.  .+++++.||.|.+||+..+..
T Consensus        90 V~~l~f--d~~~L-~v~-~~-----~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~  158 (388)
T 1xip_A           90 VIFVCF--HGDQV-LVS-TR-----NALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST  158 (388)
T ss_dssp             EEEEEE--ETTEE-EEE-ES-----SEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE
T ss_pred             eeEEEE--CCCEE-EEE-cC-----CcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc
Confidence            777888  66666 443 33     46778887777766677788888988887764  388899999999999997776


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE--EEEE------e----cCCceEEEEEccCCcEEEEEE
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK--VYDI------C----IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~--~~~~------~----~~~~V~~l~fspdg~~l~s~s  154 (432)
                      ..    +...|+|++|||+|  ++.|..||++.+|+..++..  ...+      .    +...|.++.|.+++.++++=+
T Consensus       159 ~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          159 KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            43    44589999999999  78899999999999887775  5566      2    467799999999999888643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.93  E-value=5.8e-09  Score=111.21  Aligned_cols=149  Identities=9%  Similarity=-0.076  Sum_probs=98.2

Q ss_pred             CCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc------cCCcCEEEEEEcCCCCEEEE-----EeCCCeEEEEeC
Q psy9319          13 NPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK------AHPVTCICIEFDPTGKYFAV-----GSKDALVSLWDA   81 (432)
Q Consensus        13 ~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~------~h~~~V~~l~~spdg~~L~s-----gs~dg~I~iwd~   81 (432)
                      +|+|..++.+ ..+..-....+...+...+.....+.      +|...+.+++|||||++|+.     |+.+..|++||+
T Consensus        76 ~~dG~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYV-RTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEE-EECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEE-EEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            4677766333 33332122333333433443333332      45567899999999999983     444568999999


Q ss_pred             CCCeeEEEEeeCCCCE--EEEEEeeCCCEEEEEeCCCe-------------EEEEeCCCCcE--EEEEe---cCCceEEE
Q psy9319          82 AELTCIRTFQRLDWPV--RAISFSHDGALIASGSEDLT-------------IDIAHVESGKK--VYDIC---IQAATFTV  141 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V--~~i~~spdg~~l~sgs~dg~-------------V~vwd~~~~~~--~~~~~---~~~~V~~l  141 (432)
                      .++..+.  ..+...+  .+++|+|||+.|+.++.|..             |++|++.++..  ...+.   +...+.++
T Consensus       155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          155 DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            9987641  1121222  67999999999999988766             99999988762  22232   34578899


Q ss_pred             EEccCCcEEEEEECCC----eEEEEeC
Q psy9319         142 AWHPKQYLLAYACDDK----YDRKQDC  164 (432)
Q Consensus       142 ~fspdg~~l~s~s~d~----~I~vwd~  164 (432)
                      .|+|||++|++++.++    .|++||.
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~  259 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRP  259 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcC
Confidence            9999999988877665    4555544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.93  E-value=4.2e-08  Score=104.72  Aligned_cols=150  Identities=7%  Similarity=-0.072  Sum_probs=106.4

Q ss_pred             ccccccCCCCcceeeeeeecCC-----------CceeEEEEeecCcceee--EEEcc--CCcCEEEEEEcCCCCEEEEEe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDIS-----------PKQLDFKFKEHHKLEEQ--NILKA--HPVTCICIEFDPTGKYFAVGS   71 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~-----------~~~~~i~~~d~~~~~~~--~~l~~--h~~~V~~l~~spdg~~L~sgs   71 (432)
                      +..+.|+|++..++.+ +.|..           .....+.+|+..++...  ..+..  |...+..+.|||||++|+.++
T Consensus       173 ~~~~~wspDg~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             SCCEEECTTSSEEEEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEeCCCEEEEE-EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            4568899999887444 44443           23456888888776532  33333  556688999999999998776


Q ss_pred             C-----CCeEEEEeCCC------Ce-eEEEEeeCCCCEEEEEEeeCCCEEEEEeCC----CeEEEEeCCCCcE---EEEE
Q psy9319          72 K-----DALVSLWDAAE------LT-CIRTFQRLDWPVRAISFSHDGALIASGSED----LTIDIAHVESGKK---VYDI  132 (432)
Q Consensus        72 ~-----dg~I~iwd~~~------~~-~~~~~~~h~~~V~~i~~spdg~~l~sgs~d----g~V~vwd~~~~~~---~~~~  132 (432)
                      .     +..|.+||+.+      +. ....+..+...+.. .|+|+|..|+..+..    +.|.+||+.++..   ...+
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            5     56899999976      43 45667767666655 589999988877653    3699999988742   3333


Q ss_pred             ecCC--ceEEEEEccCCcEEEEEECCCe
Q psy9319         133 CIQA--ATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       133 ~~~~--~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .+..  .+..++|++++.+++++..++.
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~  358 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence            4433  5788999988888888888886

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.90  E-value=1.6e-08  Score=98.80  Aligned_cols=141  Identities=11%  Similarity=-0.081  Sum_probs=94.7

Q ss_pred             cccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcC-CCCEEEEEeCC------CeEEEEeCC
Q psy9319          10 LGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKD------ALVSLWDAA   82 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~sgs~d------g~I~iwd~~   82 (432)
                      +.++|++..++..... .......+.+||..+++..... .+...+..+.|+| +|..|+.++.+      ..|.+||+.
T Consensus       147 ~~~spdg~~~~~~~~~-~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (396)
T 3c5m_A          147 RDWQPLTSWEKFAEFY-HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED  224 (396)
T ss_dssp             GGCCCCCSHHHHHHHH-HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred             cccCCCCcceeeeeec-cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence            5677777765332210 0013356778888777655444 5667889999999 88877766543      368889987


Q ss_pred             CCeeEEEEeeC--CCCEEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEEEEEecCCceEEEEEcc-CCcEEEEEE
Q psy9319          83 ELTCIRTFQRL--DWPVRAISFSHDGALIASGSED-----LTIDIAHVESGKKVYDICIQAATFTVAWHP-KQYLLAYAC  154 (432)
Q Consensus        83 ~~~~~~~~~~h--~~~V~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~~~~~~~~~V~~l~fsp-dg~~l~s~s  154 (432)
                      ++... .+..+  ...+..++|+|||++|+.++.+     +.|++||+.+++......... .. +.|+| +|.++++++
T Consensus       225 ~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          225 GSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             SCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEE
T ss_pred             CCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEec
Confidence            65433 33333  2358889999999988777543     459999999887654433332 33 89999 999888765


Q ss_pred             C
Q psy9319         155 D  155 (432)
Q Consensus       155 ~  155 (432)
                      .
T Consensus       302 ~  302 (396)
T 3c5m_A          302 C  302 (396)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.89  E-value=3.3e-08  Score=91.53  Aligned_cols=153  Identities=8%  Similarity=-0.038  Sum_probs=104.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..+..+.++|++.++ ++...+.     .+..++..+.........+...+.+++++|+|.++++...++.|.+||..+.
T Consensus       108 ~~p~~i~~~~~g~l~-v~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVY-VADRGNN-----RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             SSEEEEEECTTCCEE-EEEGGGT-----EEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             CCCcceEECCCCCEE-EEECCCC-----EEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            456778888888755 4433222     3444554433332222233345788999999997777777889999999876


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      ........+...+.+++++++|.++++...++.|.+||..+........ +...+.+++++|+|.++++.+.++.|++++
T Consensus       182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            5443333344678999999999877777778899999987654433222 235688999999999888888888844433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.85  E-value=9.1e-08  Score=88.52  Aligned_cols=152  Identities=11%  Similarity=-0.017  Sum_probs=104.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.+..++++|++.++ ++.. +     ..+..++..... ...+. .....+.+++++|+|.++++...++.|.+|+..+
T Consensus        67 ~~p~~i~~~~~g~l~-v~~~-~-----~~i~~~d~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  138 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVY-VTDF-N-----NRVVTLAAGSNN-QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS  138 (270)
T ss_dssp             CSCCCEEECTTCCEE-EEET-T-----TEEEEECTTCSC-CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred             CCcceeEECCCCCEE-EEcC-C-----CEEEEEeCCCce-EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC
Confidence            456778888888855 4432 2     245666655443 33333 2335689999999999888877788999998765


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      .............+.+++++|+|.++++...++.|.+||..++....... ....+..++++|+|.++++...++.|.+|
T Consensus       139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  218 (270)
T ss_dssp             CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred             ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence            54332222333467889999999977777778899999988766543322 33568899999999777776667774444


Q ss_pred             eC
Q psy9319         163 DC  164 (432)
Q Consensus       163 d~  164 (432)
                      |.
T Consensus       219 ~~  220 (270)
T 1rwi_B          219 LA  220 (270)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.84  E-value=1.1e-07  Score=89.67  Aligned_cols=129  Identities=10%  Similarity=-0.004  Sum_probs=103.5

Q ss_pred             eEEEEeecCcceeeEEEccCC-cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCC-CCEEEEEEeeCCCEE
Q psy9319          32 LDFKFKEHHKLEEQNILKAHP-VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD-WPVRAISFSHDGALI  109 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~i~~spdg~~l  109 (432)
                      ..+.+||..+++.+..+..+. ..+.+++++|+|++|+  +.++.|..||. +|+.+..+..+. ..+.++.+.|+|.++
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~l   91 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNAL   91 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEE
T ss_pred             CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEE
Confidence            456788888999999998876 4678999999999888  45778999999 798888888653 478899999999999


Q ss_pred             EEEeC-CCeEEEEeCCCCcEEEEEecC-------CceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         110 ASGSE-DLTIDIAHVESGKKVYDICIQ-------AATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       110 ~sgs~-dg~V~vwd~~~~~~~~~~~~~-------~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ++.+. ++.|..+|. +|+.+..+...       .....+++.++|.++++.+.++.|..||.
T Consensus        92 v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           92 VAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             EEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred             EEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence            99887 888888886 78877776521       23445678999999999999999544444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.84  E-value=1.7e-07  Score=97.45  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=81.8

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCeeEEEEeeCCCCEEEEEEe----eCC
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA--ELTCIRTFQRLDWPVRAISFS----HDG  106 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~i~~s----pdg  106 (432)
                      .+.++|..+++.+..+.... .+.++.|||||+++++++.|+.|.+||+.  +++.+..+... .....++||    |||
T Consensus       178 ~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDG  255 (567)
T 1qks_A          178 QIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWED  255 (567)
T ss_dssp             EEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTT
T ss_pred             eEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCC
Confidence            56778888998888887543 45689999999999999999999999996  77777777643 346899999    799


Q ss_pred             CEEEEEe-CCCeEEEEeCCCCcEEEEEe
Q psy9319         107 ALIASGS-EDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus       107 ~~l~sgs-~dg~V~vwd~~~~~~~~~~~  133 (432)
                      +++++++ .+++|.++|..+.+.+..+.
T Consensus       256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          256 KYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence            9988777 56999999999888877664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.84  E-value=4.2e-08  Score=105.31  Aligned_cols=156  Identities=17%  Similarity=0.043  Sum_probs=106.1

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCe-----------
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDAL-----------   75 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~-----------   75 (432)
                      +....|||++..++.+. .+.......|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.           
T Consensus       165 ~~~~~~SPDG~~la~~~-~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSV-QDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEECTTSSEEEEEE-EETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEeEEECCCCCEEEEEE-cCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            56788999999885444 44333456899999998877543 112222357899999 99988877654           


Q ss_pred             ---EEEEeCCCCee--EEEEee--CCCCEEEEEEeeCCCEEEEEeCCC-----eEEEEeCCCC--c-EEEEEecCCceEE
Q psy9319          76 ---VSLWDAAELTC--IRTFQR--LDWPVRAISFSHDGALIASGSEDL-----TIDIAHVESG--K-KVYDICIQAATFT  140 (432)
Q Consensus        76 ---I~iwd~~~~~~--~~~~~~--h~~~V~~i~~spdg~~l~sgs~dg-----~V~vwd~~~~--~-~~~~~~~~~~V~~  140 (432)
                         |++|++.++..  ...+..  +...+.++.|||||++|+..+.++     .|++||+.++  . ......+...+..
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  321 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD  321 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence               89999987652  233332  334588999999999988877543     8999999887  4 3333334444544


Q ss_pred             EEEccCCcEEEEEECC----CeEEEEeCCc
Q psy9319         141 VAWHPKQYLLAYACDD----KYDRKQDCGN  166 (432)
Q Consensus       141 l~fspdg~~l~s~s~d----~~I~vwd~~~  166 (432)
                      .. +|+|..|+..+.+    +.|.+||+..
T Consensus       322 ~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          322 FV-DGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            43 4889888887764    3477777643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.77  E-value=7.5e-07  Score=87.75  Aligned_cols=163  Identities=6%  Similarity=-0.133  Sum_probs=111.9

Q ss_pred             ccccCCCCcceeeeeeecCCC----ceeEEEEeecCcceeeEEEccC-------CcCEEEEEEcCCCCEEEEEeC--CCe
Q psy9319           9 LLGLNPRPSLYQSSVLTDISP----KQLDFKFKEHHKLEEQNILKAH-------PVTCICIEFDPTGKYFAVGSK--DAL   75 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~----~~~~i~~~d~~~~~~~~~l~~h-------~~~V~~l~~spdg~~L~sgs~--dg~   75 (432)
                      .+.++|++..+.++.......    ....+.++|..+++.+..+.-.       ......++|+|||++|+.++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            788999999886765432211    1235677788888777766432       123457899999999998874  478


Q ss_pred             EEEEeCCCCeeEEE-EeeC--------------------------------------------------C----------
Q psy9319          76 VSLWDAAELTCIRT-FQRL--------------------------------------------------D----------   94 (432)
Q Consensus        76 I~iwd~~~~~~~~~-~~~h--------------------------------------------------~----------   94 (432)
                      |.++| .+++.+.. +...                                                  .          
T Consensus       150 v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  228 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence            99999 87766554 2100                                                  0          


Q ss_pred             --------------------------------------CCEEEEEEeeCCCEEEEEeC----------CCeEEEEeCCCC
Q psy9319          95 --------------------------------------WPVRAISFSHDGALIASGSE----------DLTIDIAHVESG  126 (432)
Q Consensus        95 --------------------------------------~~V~~i~~spdg~~l~sgs~----------dg~V~vwd~~~~  126 (432)
                                                            .....+.++|++..++.+..          ++.|.++|+.++
T Consensus       229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~  308 (373)
T 2mad_H          229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             EEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence                                                  00011456666676666543          357999999999


Q ss_pred             cEEEEEecCCceEEEEEccCCc-EEEEEE-CCCeEEEEeCCceEEeecCCCceeee
Q psy9319         127 KKVYDICIQAATFTVAWHPKQY-LLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKKR  180 (432)
Q Consensus       127 ~~~~~~~~~~~V~~l~fspdg~-~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~~  180 (432)
                      +.+..+.......+++|+|||+ .++++. .++.        +.++|+.+++.+..
T Consensus       309 ~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~--------V~ViD~~t~~vv~~  356 (373)
T 2mad_H          309 QTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV--------LHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCe--------EEEEECCCCCEEee
Confidence            9999998777789999999999 677766 4777        66777777666655

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.74  E-value=4e-07  Score=86.00  Aligned_cols=154  Identities=8%  Similarity=-0.013  Sum_probs=102.0

Q ss_pred             CcccccccCCCCcceeeeeeecC----------CCceeEEEEeecCcceeeEEEccCCcCEEEEEEc----CCCCEEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDI----------SPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD----PTGKYFAVG   70 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~----------~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~s----pdg~~L~sg   70 (432)
                      +.+..+.++|++.+++++ ..+.          ......+..++.. ++... +..+......++|+    |+|..|+.+
T Consensus       117 ~~~~~i~~d~~g~l~v~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~  193 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITA-PAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVA  193 (314)
T ss_dssp             BCCCEEEECTTSCEEEEE-CBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEE
T ss_pred             cCCcCEEECCCCCEEEEe-cCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEE
Confidence            346788899998876443 2221          0011345555554 44332 22333456889999    999765544


Q ss_pred             -eCCCeEEEEeCC-CCee-----EEEEeeCC-CCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEE
Q psy9319          71 -SKDALVSLWDAA-ELTC-----IRTFQRLD-WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTV  141 (432)
Q Consensus        71 -s~dg~I~iwd~~-~~~~-----~~~~~~h~-~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l  141 (432)
                       +.++.|.+||+. ++..     ...+..+. ..+..++++++|.++++...++.|.+||..+++.+..+. +...+.++
T Consensus       194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i  273 (314)
T 1pjx_A          194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL  273 (314)
T ss_dssp             ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred             ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE
Confidence             567899999976 4432     22233333 568899999999988888888999999998777666665 44678999


Q ss_pred             EEccCCcEEEEEE-CCCeEEE
Q psy9319         142 AWHPKQYLLAYAC-DDKYDRK  161 (432)
Q Consensus       142 ~fspdg~~l~s~s-~d~~I~v  161 (432)
                      +|+|+|..|++++ .++.|..
T Consensus       274 ~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          274 HFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EECTTSSEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEE
Confidence            9999999555554 4566333

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.71  E-value=3.9e-07  Score=87.80  Aligned_cols=122  Identities=9%  Similarity=-0.014  Sum_probs=92.5

Q ss_pred             eEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCC-----CCEEEEEEeeCC
Q psy9319          32 LDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD-----WPVRAISFSHDG  106 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~-----~~V~~i~~spdg  106 (432)
                      ..+.++|..+++.+..+.. ......+++++++..+++...++.|.+||+.++.....+....     .....+++ .+ 
T Consensus        64 ~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~-  140 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG-  140 (328)
T ss_dssp             TEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET-
T ss_pred             CEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC-
Confidence            4577889999999888854 4667899999998555554489999999999998877766433     14556777 44 


Q ss_pred             CEEEEEe--CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC
Q psy9319         107 ALIASGS--EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       107 ~~l~sgs--~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      ..++.++  .++.|.++|+.+++.+..+........++++|+|++++++..+
T Consensus       141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~  192 (328)
T 3dsm_A          141 KYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGG  192 (328)
T ss_dssp             TEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred             CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCC
Confidence            4455444  4889999999999988888766667789999999977776554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.68  E-value=2.7e-06  Score=79.32  Aligned_cols=149  Identities=7%  Similarity=-0.030  Sum_probs=104.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE-EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN-ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~-~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.+.++.++|++.+++++ ..     ...+..++.. +.... .+..+...+.+++++++|.++++...++.|..||.. 
T Consensus        15 ~~~~~i~~d~~g~l~v~~-~~-----~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQ-HK-----ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCEEEEEECTTSCEEEEE-TT-----TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCccceEECCCCCEEEEe-cC-----CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            567888999999877443 21     2345666765 43322 223345678999999999988887778899999986 


Q ss_pred             CeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-e-cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          84 LTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-C-IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        84 ~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~-~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      +.. ..+.  .....+.+++++|+|.++++...++.|.+||. ++...... . ....+..++++|+|.++++...++.|
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            432 2332  24557899999999998888777889999998 66544322 1 34568899999999887776666774


Q ss_pred             EEEe
Q psy9319         160 RKQD  163 (432)
Q Consensus       160 ~vwd  163 (432)
                      ..||
T Consensus       165 ~~~~  168 (299)
T 2z2n_A          165 GRIT  168 (299)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            4444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.67  E-value=3.1e-07  Score=88.50  Aligned_cols=155  Identities=5%  Similarity=-0.085  Sum_probs=108.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC-----cCEEEEEEcCCCCEEEEEe-CCCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP-----VTCICIEFDPTGKYFAVGS-KDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~-----~~V~~l~~spdg~~L~sgs-~dg~I~i   78 (432)
                      .....++++|++.++ ++...+     ..+.++|..+++....+....     .....+++ .++.++++.. .++.|.+
T Consensus        84 ~~p~~i~~~~~g~ly-v~~~~~-----~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~v  156 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAY-VTQIWD-----YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILK  156 (328)
T ss_dssp             SSEEEEEEEETTEEE-EEEBSC-----SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEE
T ss_pred             CCCcEEEEeCCCeEE-EEECCC-----CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEE
Confidence            344567777777544 443332     456778888888877766433     13456677 3444444443 4889999


Q ss_pred             EeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC----------CeEEEEeCCCCcEEEEEec--CCceEEEEEccC
Q psy9319          79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED----------LTIDIAHVESGKKVYDICI--QAATFTVAWHPK  146 (432)
Q Consensus        79 wd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d----------g~V~vwd~~~~~~~~~~~~--~~~V~~l~fspd  146 (432)
                      +|+.++..+..+... .....+.++|+|++++++..+          +.|.++|..+++....+..  ...+..++|+|+
T Consensus       157 iD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          157 IDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             EETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred             EECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence            999999888777643 345788999999877776654          7899999999988777753  346889999999


Q ss_pred             CcEEEEEECCCeEEEEeCCceEEeecCCCce
Q psy9319         147 QYLLAYACDDKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       147 g~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                      +..|+++..  .        +.+||..++..
T Consensus       236 ~~~lyv~~~--~--------v~~~d~~t~~~  256 (328)
T 3dsm_A          236 RDTLYWINN--D--------IWRMPVEADRV  256 (328)
T ss_dssp             SCEEEEESS--S--------EEEEETTCSSC
T ss_pred             CCEEEEEcc--E--------EEEEECCCCce
Confidence            998887754  5        56666665554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.64  E-value=9.5e-07  Score=83.66  Aligned_cols=149  Identities=9%  Similarity=0.059  Sum_probs=100.4

Q ss_pred             CcccccccCCCCcceeeeeeecCC-----CceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDIS-----PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~-----~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~i   78 (432)
                      +.++.+.++|++.+++.+...+..     .....+..++.. +... .+..+......++|+|+++.|+ +.+.++.|.+
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~  175 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDA  175 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEE
Confidence            446778899999866433222111     122334444432 3332 2333334568899999998764 5566789999


Q ss_pred             EeC--CCCee-----EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC-CceEEEEEc-cCCcE
Q psy9319          79 WDA--AELTC-----IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ-AATFTVAWH-PKQYL  149 (432)
Q Consensus        79 wd~--~~~~~-----~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~-~~V~~l~fs-pdg~~  149 (432)
                      ||+  .++..     ...+..+.+.+..++++++|+++++...++.|.+||..+|+.+..+... ..+.+++|. |++..
T Consensus       176 ~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          176 FDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             EeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence            987  45543     1222233456889999999998888888889999999999998888744 679999998 88877


Q ss_pred             EEEEEC
Q psy9319         150 LAYACD  155 (432)
Q Consensus       150 l~s~s~  155 (432)
                      |+.++.
T Consensus       256 L~vt~~  261 (297)
T 3g4e_A          256 MYVTCA  261 (297)
T ss_dssp             EEEEEB
T ss_pred             EEEEcC
Confidence            665554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.62  E-value=2.2e-06  Score=84.34  Aligned_cols=125  Identities=11%  Similarity=0.019  Sum_probs=93.9

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCeeEEEEeeC-------CC
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------KDALVSLWDAAELTCIRTFQRL-------DW   95 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~   95 (432)
                      .+.++|..+++.+..+.....+  .+++||||++++.+.          .++.|.+||..+++.+..+...       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            6788899999988888765555  899999999998876          3678999999988877766432       12


Q ss_pred             CEEEEEEeeCCCEEEEEeC--CCeEEEEeCCCCcEEEE-EecCCceEEEEEccCC-cEEEEEECCCeEEEEe
Q psy9319          96 PVRAISFSHDGALIASGSE--DLTIDIAHVESGKKVYD-ICIQAATFTVAWHPKQ-YLLAYACDDKYDRKQD  163 (432)
Q Consensus        96 ~V~~i~~spdg~~l~sgs~--dg~V~vwd~~~~~~~~~-~~~~~~V~~l~fspdg-~~l~s~s~d~~I~vwd  163 (432)
                      ....+.|+|||++|+.++.  ++.|.++| .+++.+.. +.....   +.+.|++ ..+++.+.||.+.++|
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd  193 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEE
Confidence            3568999999999998874  57899999 99998887 654443   4455655 4556667788833333

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.59  E-value=6e-06  Score=76.87  Aligned_cols=151  Identities=9%  Similarity=-0.047  Sum_probs=101.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee-eEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE-QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.+..+.++|++.++++. ..+     ..+..++.. +.. ...+......+.+++++|+|.++++...++.|.+||. +
T Consensus        57 ~~~~~i~~~~~g~l~v~~-~~~-----~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTE-NAA-----NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             CCEEEEEECTTSCEEEEE-TTT-----TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             CceeeEEECCCCCEEEeC-CCC-----CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C
Confidence            456677888888766332 212     234555654 322 1222234567899999999988888777889999998 5


Q ss_pred             CeeEEE-EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE-Ee-cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRT-FQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD-IC-IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~-~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~-~~-~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      +..... ...+...+.+++++|+|.++++...++.|..||. ++..... .. ....+..++++++|.++++...++.|.
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence            544322 2234467899999999988887777889999999 7665443 22 345588999999999777666677744


Q ss_pred             EEeC
Q psy9319         161 KQDC  164 (432)
Q Consensus       161 vwd~  164 (432)
                      +||.
T Consensus       208 ~~~~  211 (299)
T 2z2n_A          208 RITT  211 (299)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            4443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.58  E-value=1.9e-06  Score=84.94  Aligned_cols=149  Identities=10%  Similarity=0.018  Sum_probs=108.0

Q ss_pred             ccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------CCCeEEEEe
Q psy9319          11 GLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------KDALVSLWD   80 (432)
Q Consensus        11 ~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------~dg~I~iwd   80 (432)
                      ...|++..++++...... ....+.+.|..+++.+..+.....+ . +++||||++++.++          .++.|.+||
T Consensus        39 ~~~pd~~~vyV~~~~~~~-~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFA-AVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCTTEEEEEECGGGC-SSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccCCCCCEEEEEcCcccC-CCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            446888777666432110 1247788899999999998876666 3 99999999887765          367899999


Q ss_pred             CCCCeeEEEEeeCC-------CCEEEEEEeeCCCEEEEEeC--CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEE
Q psy9319          81 AAELTCIRTFQRLD-------WPVRAISFSHDGALIASGSE--DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLA  151 (432)
Q Consensus        81 ~~~~~~~~~~~~h~-------~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~  151 (432)
                      ..+++.+..+.-..       .....+.|+|||++++.++.  ++.|.++|+.+++.+..+...+.  ...+......++
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~  193 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF  193 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence            99999888775322       24567999999999988864  68999999999999998865442  223333445667


Q ss_pred             EEECCCeEEEEeC
Q psy9319         152 YACDDKYDRKQDC  164 (432)
Q Consensus       152 s~s~d~~I~vwd~  164 (432)
                      +.+.||.+.+.++
T Consensus       194 ~~~~DG~~~~v~~  206 (386)
T 3sjl_D          194 MHCRDGSLAKVAF  206 (386)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EECCCCCEEEEEC
Confidence            7788888444444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.57  E-value=5.2e-06  Score=78.51  Aligned_cols=159  Identities=9%  Similarity=0.023  Sum_probs=100.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc----CCcCEEEEEEcCCCCEEEEEeC--------
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA----HPVTCICIEFDPTGKYFAVGSK--------   72 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~----h~~~V~~l~~spdg~~L~sgs~--------   72 (432)
                      +.+.++.++|++.++ ++.  +     ..+..+|..+++.......    ....+.+++++|+|+++++...        
T Consensus        54 ~~~~~i~~~~dG~l~-v~~--~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~  125 (297)
T 3g4e_A           54 APVSSVALRQSGGYV-ATI--G-----TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVL  125 (297)
T ss_dssp             SCEEEEEEBTTSSEE-EEE--T-----TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBC
T ss_pred             CceEEEEECCCCCEE-EEE--C-----CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccc
Confidence            456778889998855 332  1     1456677766654333221    1245789999999997765432        


Q ss_pred             ---CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEeC--CCCcEE--EEE---e-cCCceEE
Q psy9319          73 ---DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG-SEDLTIDIAHV--ESGKKV--YDI---C-IQAATFT  140 (432)
Q Consensus        73 ---dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~--~~~~~~--~~~---~-~~~~V~~  140 (432)
                         .+.|..++.. +.. ..+..+....+.++|+|+++.|+.+ +.++.|.+||+  .+|...  ..+   . ....+..
T Consensus       126 ~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g  203 (297)
T 3g4e_A          126 ERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG  203 (297)
T ss_dssp             CTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred             cCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence               2344445543 333 3333344567899999999877554 56789999987  455432  112   2 2356788


Q ss_pred             EEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         141 VAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       141 l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      ++++++|.+.++...++.        |.+|+..+|..+..+
T Consensus       204 ~~~d~~G~lwva~~~~~~--------v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          204 MCIDAEGKLWVACYNGGR--------VIRLDPVTGKRLQTV  236 (297)
T ss_dssp             EEEBTTSCEEEEEETTTE--------EEEECTTTCCEEEEE
T ss_pred             eEECCCCCEEEEEcCCCE--------EEEEcCCCceEEEEE
Confidence            999999988888777788        555555555555444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.55  E-value=2e-06  Score=91.57  Aligned_cols=155  Identities=10%  Similarity=0.038  Sum_probs=101.1

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEE-EccCCcCEEEEEEcCCCCEEEEEeCCC----------
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNI-LKAHPVTCICIEFDPTGKYFAVGSKDA----------   74 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~sgs~dg----------   74 (432)
                      .+..+.|||++..++.+.+ ........|+++|+.+++.+.. +.+.  ....++|+ ||+.|+.++.+.          
T Consensus       130 ~l~~~~~SpDg~~lAy~~~-~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLS-LAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEE-CSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             EEEEEEECCCCCEEEEEEe-cCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            3566789999998754433 3334457899999999886543 2221  12567899 999999888774          


Q ss_pred             ---eEEEEeCCCCee--EEEEe--e-CCCCEEEEEEeeCCCEEEEEeC----CCeEEEEeCCCCc-EEEEEe-cCCceEE
Q psy9319          75 ---LVSLWDAAELTC--IRTFQ--R-LDWPVRAISFSHDGALIASGSE----DLTIDIAHVESGK-KVYDIC-IQAATFT  140 (432)
Q Consensus        75 ---~I~iwd~~~~~~--~~~~~--~-h~~~V~~i~~spdg~~l~sgs~----dg~V~vwd~~~~~-~~~~~~-~~~~V~~  140 (432)
                         .|++|++.++..  ...+.  . |...+.++.|||||++|+..+.    ++.|+++|+.++. ....+. +......
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~  285 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS  285 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence               399999987543  22332  3 4456788999999998865432    2589999998763 333343 4444544


Q ss_pred             EEEccCCcEEEEEEC-C---CeEEEEeCC
Q psy9319         141 VAWHPKQYLLAYACD-D---KYDRKQDCG  165 (432)
Q Consensus       141 l~fspdg~~l~s~s~-d---~~I~vwd~~  165 (432)
                      . |+++|..|+..+. +   +.|..+|+.
T Consensus       286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~  313 (693)
T 3iuj_A          286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAA  313 (693)
T ss_dssp             E-EEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             E-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            4 6676665555443 3   455566553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.55  E-value=4.4e-06  Score=80.32  Aligned_cols=148  Identities=12%  Similarity=-0.018  Sum_probs=96.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCC-
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-SKDALVSLWDAA-   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s~dg~I~iwd~~-   82 (432)
                      +.+..+.++|++.+++.+...+.......+..++  +++.. .+..+......++|+|+|+.|+.+ +.++.|.+||+. 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~  210 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  210 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence            4567888999998664332211111123344444  34433 232333456789999999876554 557899999986 


Q ss_pred             -CC-ee-----EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEc-cCCcEEEEE
Q psy9319          83 -EL-TC-----IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWH-PKQYLLAYA  153 (432)
Q Consensus        83 -~~-~~-----~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fs-pdg~~l~s~  153 (432)
                       ++ ..     ...+......+..++++++|.++++...++.|.+||. +++.+..+. ....+.+++|+ |++..|+++
T Consensus       211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence             55 32     2222223456788999999998887777789999998 677777776 34469999998 888766655


Q ss_pred             ECC
Q psy9319         154 CDD  156 (432)
Q Consensus       154 s~d  156 (432)
                      +..
T Consensus       290 ~~~  292 (326)
T 2ghs_A          290 SAR  292 (326)
T ss_dssp             EBC
T ss_pred             ecC
Confidence            443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.54  E-value=1.5e-06  Score=87.02  Aligned_cols=165  Identities=9%  Similarity=0.002  Sum_probs=115.0

Q ss_pred             ccccCCCCcceeeeeeecCC----CceeEEEEeecCcceeeEEEccC-------CcCEEEEEEcCCCCEEEEEeC--CCe
Q psy9319           9 LLGLNPRPSLYQSSVLTDIS----PKQLDFKFKEHHKLEEQNILKAH-------PVTCICIEFDPTGKYFAVGSK--DAL   75 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~----~~~~~i~~~d~~~~~~~~~l~~h-------~~~V~~l~~spdg~~L~sgs~--dg~   75 (432)
                      .+.++|++..++++......    -....+.++|..+++.+..+.-.       ......++|+|||++++.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            68899999988676542111    02346788899999888877521       122356789999999988764  578


Q ss_pred             EEEEeCCCCeeEEEEeeC----------------------------CCC-------------------------------
Q psy9319          76 VSLWDAAELTCIRTFQRL----------------------------DWP-------------------------------   96 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h----------------------------~~~-------------------------------   96 (432)
                      |.+.|+.+++.+.++...                            .+.                               
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            999999887654333210                            000                               


Q ss_pred             ------E---------------------------------EEEEEeeCCCEEEEEeC----------CCeEEEEeCCCCc
Q psy9319          97 ------V---------------------------------RAISFSHDGALIASGSE----------DLTIDIAHVESGK  127 (432)
Q Consensus        97 ------V---------------------------------~~i~~spdg~~l~sgs~----------dg~V~vwd~~~~~  127 (432)
                            |                                 ..++++|++..++....          ++.|.+.|+.+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence                  0                                 01566777776665532          3579999999999


Q ss_pred             EEEEEecCCceEEEEEccCCc-EEEEEE-CCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         128 KVYDICIQAATFTVAWHPKQY-LLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       128 ~~~~~~~~~~V~~l~fspdg~-~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      .+..+........+.|+|||+ +++++. .++.        |.++|+.+++.+.++
T Consensus       362 vv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~--------VsVID~~t~kvv~tI  409 (426)
T 3c75_H          362 RINKIELGHEIDSINVSQDAEPLLYALSAGTQT--------LHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEEEEEECEEEECCSSSCEEEEEETTTTE--------EEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe--------EEEEECCCCCEEEEe
Confidence            999988666788999999998 888887 4788        667777777766654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.53  E-value=1.3e-06  Score=90.92  Aligned_cols=105  Identities=10%  Similarity=0.043  Sum_probs=85.9

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC--CCcEEEEEecCCce
Q psy9319          61 DPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVE--SGKKVYDICIQAAT  138 (432)
Q Consensus        61 spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~--~~~~~~~~~~~~~V  138 (432)
                      +|.+.++++...+++|.++|..+++.+.++.. ...+..+.|||||+++++++.|+.|.+||+.  +++.+..+......
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P  242 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  242 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence            34456677888899999999999998888863 4467899999999999999999999999996  88888888766678


Q ss_pred             EEEEEc----cCCcEEEEEEC-CCeEEEEeCCc
Q psy9319         139 FTVAWH----PKQYLLAYACD-DKYDRKQDCGN  166 (432)
Q Consensus       139 ~~l~fs----pdg~~l~s~s~-d~~I~vwd~~~  166 (432)
                      ..++|+    |||+++++++. ++.|.++|..+
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            899999    69998887764 47766666544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.49  E-value=3.6e-06  Score=79.87  Aligned_cols=151  Identities=9%  Similarity=-0.092  Sum_probs=100.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      .......|+|++..++.+...+     ..+..|+. ++. ...+..+...+.+++++++|+++++...++.|.+|+.. +
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTT-----TEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCccCCeEeCCCCEEEEEECCC-----CEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            3345567888887444554333     24555665 443 44555667788999999999977766666889999986 5


Q ss_pred             eeEEEEeeC----CCCEEEEEEeeCCCEEEE----EeC-------------CCeEEEEeCCCCcEEEEEecCCceEEEEE
Q psy9319          85 TCIRTFQRL----DWPVRAISFSHDGALIAS----GSE-------------DLTIDIAHVESGKKVYDICIQAATFTVAW  143 (432)
Q Consensus        85 ~~~~~~~~h----~~~V~~i~~spdg~~l~s----gs~-------------dg~V~vwd~~~~~~~~~~~~~~~V~~l~f  143 (432)
                      .........    ...+.+++++|+|.++++    |..             .+.|..||..+++..... .......++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~  195 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAF  195 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEE
Confidence            533222111    134678999999998886    332             356888888777655444 4455678999


Q ss_pred             ccCCcEEEEEECC------CeEEEEeC
Q psy9319         144 HPKQYLLAYACDD------KYDRKQDC  164 (432)
Q Consensus       144 spdg~~l~s~s~d------~~I~vwd~  164 (432)
                      +|++..|+.+...      +.|.+||+
T Consensus       196 spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          196 SPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             CTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             cCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence            9999988777665      56444443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.49  E-value=5.8e-06  Score=88.59  Aligned_cols=151  Identities=10%  Similarity=-0.046  Sum_probs=100.6

Q ss_pred             cccccCCCCcceeeeeeecCCC---------ceeEEEEeecCccee--eEEEcc--CCcCEEEEEEcCCCCEEEEEeCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISP---------KQLDFKFKEHHKLEE--QNILKA--HPVTCICIEFDPTGKYFAVGSKDA   74 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~---------~~~~i~~~d~~~~~~--~~~l~~--h~~~V~~l~~spdg~~L~sgs~dg   74 (432)
                      ..+.|+|+ ..++.+ +.|...         ....+.+|+..++..  ...+..  +...+..+.|||||++|+.++.++
T Consensus       212 ~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          212 SGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             CCCEESTT-SEEEEE-ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             ccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            46789999 766444 444432         145677888766652  233333  334688999999999988877544


Q ss_pred             -----eEEEEeCCCC--eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC----CeEEEEeCCCC--cEEEEEe-cCCceEE
Q psy9319          75 -----LVSLWDAAEL--TCIRTFQRLDWPVRAISFSHDGALIASGSED----LTIDIAHVESG--KKVYDIC-IQAATFT  140 (432)
Q Consensus        75 -----~I~iwd~~~~--~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d----g~V~vwd~~~~--~~~~~~~-~~~~V~~  140 (432)
                           .|.+||+.++  .+...+..+...+... ++|+|..|+..+.+    +.|.+||+.++  .....+. +...+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                 8999999876  3145566666555555 45899988887753    45999999875  2333333 3344667


Q ss_pred             EEEccCCcEEEEEECCCeEEEE
Q psy9319         141 VAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus       141 l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      ++|+ ++.++++...|+..++|
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEE
T ss_pred             EEEE-CCEEEEEEEECCEEEEE
Confidence            7887 66778888888885544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.47  E-value=2.5e-06  Score=84.96  Aligned_cols=151  Identities=3%  Similarity=-0.102  Sum_probs=100.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC--eEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA--LVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg--~I~iwd~~   82 (432)
                      +....++++|++.++ ++...     ...|+.+|..++...........+ . ++|+|++..|+++..++  .|.+|+..
T Consensus       131 ~~P~~la~d~~g~ly-v~d~~-----~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVL-AYQRD-----DPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTEEE-EEETT-----TTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCCCCEE-EEecC-----CCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            456788899998866 44322     235677787777665555543333 3 89999999998888766  79999987


Q ss_pred             CCeeEEEE----eeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE----Ee-cCCce-E-EEEEccC-CcEE
Q psy9319          83 ELTCIRTF----QRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD----IC-IQAAT-F-TVAWHPK-QYLL  150 (432)
Q Consensus        83 ~~~~~~~~----~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~----~~-~~~~V-~-~l~fspd-g~~l  150 (432)
                      .+.....+    ......+.+++++|++..|+.+..++.|..||..++.....    .. ....- . .++|+|+ +.++
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            65543343    21445678999999555566677788999999988764332    11 11111 3 8999995 5666


Q ss_pred             EEEECCCeEEEEe
Q psy9319         151 AYACDDKYDRKQD  163 (432)
Q Consensus       151 ~s~s~d~~I~vwd  163 (432)
                      ++-..++.|+.|+
T Consensus       283 v~d~~~~~I~~~~  295 (409)
T 3hrp_A          283 MSDQNLSSVYKIT  295 (409)
T ss_dssp             EEETTTTEEEEEC
T ss_pred             EEeCCCCEEEEEe
Confidence            6556677744444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.45  E-value=1.8e-06  Score=85.00  Aligned_cols=106  Identities=14%  Similarity=0.045  Sum_probs=83.5

Q ss_pred             EEEcCCCCEEEEEeC-----CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe----------CCCeEEEEe
Q psy9319          58 IEFDPTGKYFAVGSK-----DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS----------EDLTIDIAH  122 (432)
Q Consensus        58 l~~spdg~~L~sgs~-----dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs----------~dg~V~vwd  122 (432)
                      ....|++..++....     ++.|.++|..+++.+.++.....+ . +.+||||++++.++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345789988887765     679999999999999888866665 4 99999999888775          367899999


Q ss_pred             CCCCcEEEEEecC--------CceEEEEEccCCcEEEEEEC--CCeEEEEeCC
Q psy9319         123 VESGKKVYDICIQ--------AATFTVAWHPKQYLLAYACD--DKYDRKQDCG  165 (432)
Q Consensus       123 ~~~~~~~~~~~~~--------~~V~~l~fspdg~~l~s~s~--d~~I~vwd~~  165 (432)
                      ..+++.+..+...        .....++|+|||++++++..  ++.|.++|+.
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~  168 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  168 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC
Confidence            9999999888632        24567999999999988864  5774444443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.44  E-value=1.1e-05  Score=80.20  Aligned_cols=151  Identities=11%  Similarity=0.014  Sum_probs=101.0

Q ss_pred             CCcccccccCC-CCcceeeeeeecCCCceeEEEEeecCcceeeEE----EccCCcCE--EEEEEcCC-CCEEEEEeCCCe
Q psy9319           4 QNFIPLLGLNP-RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNI----LKAHPVTC--ICIEFDPT-GKYFAVGSKDAL   75 (432)
Q Consensus         4 ~n~I~~l~~~p-~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~----l~~h~~~V--~~l~~spd-g~~L~sgs~dg~   75 (432)
                      .+....++++| ++.++ ++ ..+     ..+..++..++.....    ..++.+..  ..++|+|+ +.++++.+..+.
T Consensus       218 ~~~p~~iav~p~~g~ly-v~-d~~-----~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          218 SGKIGAVALDETEEWLY-FV-DSN-----KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             CSCCCBCEECTTSSEEE-EE-CTT-----CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             cCCcEEEEEeCCCCeEE-EE-ECC-----CcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence            45567889999 45544 42 222     2566677665543222    22222222  38999995 666667677889


Q ss_pred             EEEEeCCCCeeEEEEeeCC---------------CCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEEEEec-----
Q psy9319          76 VSLWDAAELTCIRTFQRLD---------------WPVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVYDICI-----  134 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~---------------~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~~~~~-----  134 (432)
                      |..|+....  +..+.++.               .....++++|+|.++++-+ .++.|+.||+.++.......+     
T Consensus       291 I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g  368 (409)
T 3hrp_A          291 VYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVAS  368 (409)
T ss_dssp             EEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBS
T ss_pred             EEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCC
Confidence            999998743  34444442               3588999999999777777 889999999878765443333     


Q ss_pred             ----------CCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         135 ----------QAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       135 ----------~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                                -.....++++|+|.++++-..++.|+.++
T Consensus       369 ~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          369 QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             CCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             cCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence                      13578899999988888777777754443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.41  E-value=3.5e-05  Score=71.61  Aligned_cols=150  Identities=5%  Similarity=-0.044  Sum_probs=103.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE-EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN-ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~-~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      ..+.++.+++++.++++. ..     ...+..++.. +.... .+..+...+.+++++++|.++++...++.|..||.. 
T Consensus        20 ~~p~~i~~d~~g~l~v~~-~~-----~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQ-HK-----ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             CCEEEEEECTTSCEEEEE-TT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCcceeeECCCCCEEEEc-CC-----CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            456778888888876433 21     2345566655 43332 233344678999999999988877778899999988 


Q ss_pred             CeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE-Ee-cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319          84 LTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD-IC-IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus        84 ~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~-~~-~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      +... .+.  .....+.++++.++|.++++...++.|..+|.. +..... +. ....+..++++|+|.++++...++.|
T Consensus        92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence            5543 232  234678999999999988877778899999987 655422 22 34568899999999976666556774


Q ss_pred             EEEeC
Q psy9319         160 RKQDC  164 (432)
Q Consensus       160 ~vwd~  164 (432)
                      ..+|.
T Consensus       170 ~~~~~  174 (300)
T 2qc5_A          170 GRITN  174 (300)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            44443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.41  E-value=1.1e-05  Score=76.08  Aligned_cols=152  Identities=11%  Similarity=-0.052  Sum_probs=99.3

Q ss_pred             CCcccccccCCCCcceeee------eeecCCCceeEEEEeecCcceeeEEEc----cCCcCEEEEEEcCC-CCEEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSS------VLTDISPKQLDFKFKEHHKLEEQNILK----AHPVTCICIEFDPT-GKYFAVGSK   72 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s------~s~D~~~~~~~i~~~d~~~~~~~~~l~----~h~~~V~~l~~spd-g~~L~sgs~   72 (432)
                      ......++|+|++.+++++      ...+     ..+..|+..+++......    ++...+.+++++++ |.++++.. 
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-   90 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-   90 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-
Confidence            3445678889888766441      2222     346677766665543222    24567899999999 76555544 


Q ss_pred             CCeEEEEeCCCCeeEEE-Eee----CCCCEEEEEEeeCCCEEEEEeCC---------------CeEEEEeCCCCcEEEEE
Q psy9319          73 DALVSLWDAAELTCIRT-FQR----LDWPVRAISFSHDGALIASGSED---------------LTIDIAHVESGKKVYDI  132 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~-~~~----h~~~V~~i~~spdg~~l~sgs~d---------------g~V~vwd~~~~~~~~~~  132 (432)
                      ...|.+||.. +..... ...    ....+.+++++|+|.++++...+               +.|..||.. ++.....
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            4579999998 665332 221    12358899999999988777655               578888876 6654444


Q ss_pred             ecCCceEEEEEc----cCCcEEEEE-ECCCeEEEEe
Q psy9319         133 CIQAATFTVAWH----PKQYLLAYA-CDDKYDRKQD  163 (432)
Q Consensus       133 ~~~~~V~~l~fs----pdg~~l~s~-s~d~~I~vwd  163 (432)
                      ........++|+    |+|..++.+ ..++.|.+||
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~  204 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEE
Confidence            445567889999    999766555 4567755554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.40  E-value=6.1e-06  Score=78.28  Aligned_cols=148  Identities=12%  Similarity=0.007  Sum_probs=98.4

Q ss_pred             CcccccccCCCCcceeee---eeec---C-----CCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSS---VLTD---I-----SPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD   73 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s---~s~D---~-----~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d   73 (432)
                      |.+..+.++|++.++++.   +..+   +     ......+..++..+++.....  .......++|+|||+.|+.+...
T Consensus       131 ~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          131 NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECC
T ss_pred             CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecC
Confidence            456788899999877421   1110   0     011245666776666554433  33556789999999988777665


Q ss_pred             ------CeEEEEeCCCCee--EEEEe-eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEc
Q psy9319          74 ------ALVSLWDAAELTC--IRTFQ-RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWH  144 (432)
Q Consensus        74 ------g~I~iwd~~~~~~--~~~~~-~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fs  144 (432)
                            +.|.+|++..+..  ...+. ...+....++++++|+++++ +.+ .|.+||. .+..+..+.....+.+++|+
T Consensus       209 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~  285 (305)
T 3dr2_A          209 EQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPGTASNCTFD  285 (305)
T ss_dssp             C---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSSCCCEEEEC
T ss_pred             CcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCCceeEEEEe
Confidence                  6899999875431  11111 12344567889999995544 444 4999998 67777777755578999999


Q ss_pred             cCCcEEEEEECCC
Q psy9319         145 PKQYLLAYACDDK  157 (432)
Q Consensus       145 pdg~~l~s~s~d~  157 (432)
                      |++..|+.++.++
T Consensus       286 ~d~~~L~it~~~~  298 (305)
T 3dr2_A          286 QAQQRLFITGGPC  298 (305)
T ss_dssp             TTSCEEEEEETTE
T ss_pred             CCCCEEEEEcCCe
Confidence            9998888887764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.40  E-value=6.5e-06  Score=82.28  Aligned_cols=141  Identities=9%  Similarity=0.015  Sum_probs=101.0

Q ss_pred             CCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCC
Q psy9319          14 PRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------KDALVSLWDAAE   83 (432)
Q Consensus        14 p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------~dg~I~iwd~~~   83 (432)
                      |++..++++...+.... ..+.+.|..+++.+..+.....+  .+++||||++|+.++          .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            44554545543322222 67888999999999998866666  899999999888775          367899999999


Q ss_pred             CeeEEEEeeC-------CCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCCCCcEEEEEecCCceEEEEEccCC-cEEEEE
Q psy9319          84 LTCIRTFQRL-------DWPVRAISFSHDGALIASGSE--DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQ-YLLAYA  153 (432)
Q Consensus        84 ~~~~~~~~~h-------~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg-~~l~s~  153 (432)
                      ++.+..+.-.       ......+.|+|||++++.+..  ++.|.+.|+.+++.+..+...+.   ....|+| ..+++.
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~  235 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN  235 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence            9988777532       223567899999999998874  57899999999999888874432   2233433 445555


Q ss_pred             ECCCeEE
Q psy9319         154 CDDKYDR  160 (432)
Q Consensus       154 s~d~~I~  160 (432)
                      +.||.+.
T Consensus       236 ~~dG~~~  242 (426)
T 3c75_H          236 CRDGSLA  242 (426)
T ss_dssp             ETTSSEE
T ss_pred             cCCCCEE
Confidence            6666633

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.40  E-value=4e-05  Score=71.24  Aligned_cols=151  Identities=11%  Similarity=-0.086  Sum_probs=101.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee-EEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ-NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~-~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.+..+.+++++.++++. ..     ...+..++.. +... ..+......+.+++++++|.++++...++.|..||.. 
T Consensus        62 ~~~~~i~~~~~g~l~v~~-~~-----~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-  133 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTE-NG-----ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-  133 (300)
T ss_dssp             CCEEEEEECTTSCEEEEE-TT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-
T ss_pred             CcceeEEECCCCCEEEEe-cC-----CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-
Confidence            455677777877766332 11     1235556655 4432 2223344678999999999988887778899999987 


Q ss_pred             CeeEEE-EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          84 LTCIRT-FQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        84 ~~~~~~-~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      +..... +......+.+++++|+|.++++...++.|..+|. ++.......  ....+..++++++|.++++....+.|.
T Consensus       134 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence            554422 2223467899999999997777666889999998 665543221  334588999999998777666667755


Q ss_pred             EEeC
Q psy9319         161 KQDC  164 (432)
Q Consensus       161 vwd~  164 (432)
                      +||.
T Consensus       213 ~~~~  216 (300)
T 2qc5_A          213 RITT  216 (300)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            5543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.39  E-value=5.6e-06  Score=81.23  Aligned_cols=166  Identities=8%  Similarity=-0.091  Sum_probs=111.5

Q ss_pred             ccccCCCCcceeeeeee-cCC---CceeEEEEeecCcceeeEEEccC-------CcCEEEEEEcCCCCEEEEEeC--CCe
Q psy9319           9 LLGLNPRPSLYQSSVLT-DIS---PKQLDFKFKEHHKLEEQNILKAH-------PVTCICIEFDPTGKYFAVGSK--DAL   75 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~-D~~---~~~~~i~~~d~~~~~~~~~l~~h-------~~~V~~l~~spdg~~L~sgs~--dg~   75 (432)
                      .+.++|++..+.++.+. ++.   -....+.++|..+++.+..+..+       ......++|||||++++.+..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            68899999888666532 111   13467899999999999988643       122457899999999988864  456


Q ss_pred             EEE--EeCCC------Cee-------------------------------------------------------------
Q psy9319          76 VSL--WDAAE------LTC-------------------------------------------------------------   86 (432)
Q Consensus        76 I~i--wd~~~------~~~-------------------------------------------------------------   86 (432)
                      |.+  +|+.+      +.+                                                             
T Consensus       149 v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~v  228 (368)
T 1mda_H          149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             EEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEE
Confidence            888  87733      000                                                             


Q ss_pred             ----EEEEee--CC---------------------CCEEEEEEeeCCCEEEEEeC---------CCeEEEEeCCCCcEEE
Q psy9319          87 ----IRTFQR--LD---------------------WPVRAISFSHDGALIASGSE---------DLTIDIAHVESGKKVY  130 (432)
Q Consensus        87 ----~~~~~~--h~---------------------~~V~~i~~spdg~~l~sgs~---------dg~V~vwd~~~~~~~~  130 (432)
                          +..+..  ..                     .....++++||+..++.+..         ++.+.++|+.+++.+.
T Consensus       229 s~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~  308 (368)
T 1mda_H          229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             cCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence                000000  00                     00001678999888876543         2356699999999999


Q ss_pred             EEecCCceEEEEEccCCc-EEEEEE-CCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         131 DICIQAATFTVAWHPKQY-LLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       131 ~~~~~~~V~~l~fspdg~-~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      .+........++|+|||+ .++++. .++.        +.++|+.+++.+..+.
T Consensus       309 ~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~--------VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          309 PISNGHDSDAIIAAQDGASDNYANSAGTEV--------LDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CCEEEEEECEEEECCSSSCEEEEEETTTTE--------EEEEESSSCEEEEECC
T ss_pred             EEECCCCcceEEECCCCCEEEEEccCCCCe--------EEEEECCCCcEEEEEE
Confidence            887666789999999997 566666 5888        6666677666666554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.34  E-value=1.1e-05  Score=85.78  Aligned_cols=142  Identities=9%  Similarity=-0.013  Sum_probs=102.7

Q ss_pred             EEEEeecCcceeeEEEcc--CC-------cCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCeeEEEEeeCC------
Q psy9319          33 DFKFKEHHKLEEQNILKA--HP-------VTCICIEFDPTG---KYFAVGSKDALVSLWDAAELTCIRTFQRLD------   94 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~------   94 (432)
                      .+..+|..+|+.+..++.  |.       .....+....+|   ..++.++.+|.|+++|..+|+.+..+....      
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            477889999998877664  21       122233344477   688999999999999999999876654211      


Q ss_pred             -----CCE------------------------EEEEEeeCCCEEEEEeC-------------------------------
Q psy9319          95 -----WPV------------------------RAISFSHDGALIASGSE-------------------------------  114 (432)
Q Consensus        95 -----~~V------------------------~~i~~spdg~~l~sgs~-------------------------------  114 (432)
                           .++                        ..++++|++.++++.+.                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                 011                        14688998888877543                               


Q ss_pred             ------------CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         115 ------------DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       115 ------------dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                                  .+.|..||+.+|+.+..+.+..++....+.+.+..+++++.|+.        +++||..+|+.+..+.
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~--------l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR--------LVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE--------EEEEETTTCCEEEEEE
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCc--------EEEEECCCCceeeeee
Confidence                        27899999999999998887766666677778888888999999        5666666666655543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.34  E-value=3.6e-05  Score=73.85  Aligned_cols=149  Identities=9%  Similarity=-0.055  Sum_probs=95.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc---C-CcCEEEEEEcCCCCEEEEEeC------CC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA---H-PVTCICIEFDPTGKYFAVGSK------DA   74 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~---h-~~~V~~l~~spdg~~L~sgs~------dg   74 (432)
                      +.+.++.++|++.+++++  .+      .+.++|..+++.......   . ...+.+++++|+|.++++...      .+
T Consensus        90 ~~v~~i~~~~dg~l~v~~--~~------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~  161 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS--DD------GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAG  161 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE--TT------EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCE
T ss_pred             CcceEEEEeCCCeEEEEE--CC------CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCce
Confidence            356777888888766433  11      266777766664332221   1 245889999999997765542      24


Q ss_pred             eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEeCC--CC-cE-----EEEEe-cCCceEEEEEc
Q psy9319          75 LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG-SEDLTIDIAHVE--SG-KK-----VYDIC-IQAATFTVAWH  144 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~--~~-~~-----~~~~~-~~~~V~~l~fs  144 (432)
                      .|..++  ++... .+..+......++|+|+++.++.+ +.++.|.+||+.  +| ..     +..+. ....+..++++
T Consensus       162 ~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d  238 (326)
T 2ghs_A          162 SIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD  238 (326)
T ss_dssp             EEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred             EEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC
Confidence            566666  45543 333344567899999999877655 457899999986  55 31     22222 23456789999


Q ss_pred             cCCcEEEEEECCCeEEEEeC
Q psy9319         145 PKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       145 pdg~~l~s~s~d~~I~vwd~  164 (432)
                      ++|.++++...++.|..||.
T Consensus       239 ~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          239 AEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             TTSCEEEEEETTTEEEEECT
T ss_pred             CCCCEEEEEeCCCEEEEECC
Confidence            99988777766777544443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.31  E-value=4.2e-05  Score=71.40  Aligned_cols=161  Identities=10%  Similarity=0.015  Sum_probs=109.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCc-CEEEEEEcCCCCEE-EEEeCCCeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPV-TCICIEFDPTGKYF-AVGSKDALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~-~V~~l~~spdg~~L-~sgs~dg~I~iwd~~   82 (432)
                      .+.+-+.|+|++.++ ++.+..   ....+.+.|..+++.+..+.-... ....++++  |..| ++.-.++.+.++|..
T Consensus        21 ~f~~Gl~~~~dg~Ly-vstg~~---~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           21 AFTQGLVYAENDTLF-ESTGLY---GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CCEEEEEECSTTEEE-EEECST---TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             CCcccEEEeCCCeEE-EECCCC---CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            455778899987655 443221   223577889999998888753222 22345554  4445 445567899999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC---C---ceEEEEEccCCcEEEEEECC
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ---A---ATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~---~---~V~~l~fspdg~~l~s~s~d  156 (432)
                      +++.+.++.....  ..+.+++||..++++..++.|.++|..+.+.+..+...   .   .+..+.|. +|..++....+
T Consensus        95 t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A           95 TLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             TTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             CCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence            9999888863311  12446778888887778899999999999988887622   1   35678887 67554444345


Q ss_pred             CeEEEEeCCceEEeecCCCceeeeec
Q psy9319         157 KYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      +.        |.+.|..+++++..+.
T Consensus       172 ~~--------V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          172 DC--------IARISAKDGTLLGWIL  189 (266)
T ss_dssp             SE--------EEEEETTTCCEEEEEE
T ss_pred             Ce--------EEEEECCCCcEEEEEE
Confidence            56        7778888888777664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.30  E-value=4.1e-05  Score=73.91  Aligned_cols=146  Identities=10%  Similarity=0.010  Sum_probs=98.0

Q ss_pred             cccccccCCCCcceeeeeeec-CCCceeEEEEeecCcceeeEEE-------ccCCcCEEEEEEcCCCCEEEEEeC-----
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTD-ISPKQLDFKFKEHHKLEEQNIL-------KAHPVTCICIEFDPTGKYFAVGSK-----   72 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D-~~~~~~~i~~~d~~~~~~~~~l-------~~h~~~V~~l~~spdg~~L~sgs~-----   72 (432)
                      ....++++|++.++++...++ +....|.+.     +++. ..+       .+|...+.+++++++|+++++-+.     
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-----~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT-----QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKS   91 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEE-----TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTS
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEEC-----CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCC
Confidence            456788999998774432232 224455543     3332 222       235578999999999987666543     


Q ss_pred             CCeEEEEeCCCCeeEEEEeeC------CCCEEEEEEeeCCCEE-EEEe---CCCeEEEEeCCCCcEEEEEec--------
Q psy9319          73 DALVSLWDAAELTCIRTFQRL------DWPVRAISFSHDGALI-ASGS---EDLTIDIAHVESGKKVYDICI--------  134 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~~~~h------~~~V~~i~~spdg~~l-~sgs---~dg~V~vwd~~~~~~~~~~~~--------  134 (432)
                      ++.|.+||+.+++.+..+...      ...+..++++|++..+ ++.+   .++.|.+||+.++.....+..        
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            578999999999877666532      2356899999865444 4444   578999999988876554421        


Q ss_pred             ----------------------CCceEEEEEccCCcEEEEEECCC
Q psy9319         135 ----------------------QAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       135 ----------------------~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                                            ...+..++|+|+|..|+++..++
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence                                  02357799999998888877665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.21  E-value=4.1e-05  Score=81.38  Aligned_cols=152  Identities=9%  Similarity=-0.025  Sum_probs=98.5

Q ss_pred             cccccCCCCcceeeeeeecCC--------CceeEEEEeecCccee--eEEEc--c-CCcCEEEEEEcCCCCEEEEEeC--
Q psy9319           8 PLLGLNPRPSLYQSSVLTDIS--------PKQLDFKFKEHHKLEE--QNILK--A-HPVTCICIEFDPTGKYFAVGSK--   72 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~--------~~~~~i~~~d~~~~~~--~~~l~--~-h~~~V~~l~~spdg~~L~sgs~--   72 (432)
                      ..+.|+ ++..++.+ +.|..        .....+.+|+..+...  ...+.  . |...+..+.|||||++|+..+.  
T Consensus       178 ~~~~Ws-Dg~~l~y~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          178 SGISWL-GNEGFFYS-SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             CCCEEE-TTTEEEEE-ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             ccEEEe-CCCEEEEE-EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            456788 88776443 44432        3446678887766543  23333  3 4456788999999998865432  


Q ss_pred             --CCeEEEEeCCCCe-eEEEEeeCCCCEEEEEEeeCCCEEEEEeC----CCeEEEEeCCCCcE---EEEEecCCceEEEE
Q psy9319          73 --DALVSLWDAAELT-CIRTFQRLDWPVRAISFSHDGALIASGSE----DLTIDIAHVESGKK---VYDICIQAATFTVA  142 (432)
Q Consensus        73 --dg~I~iwd~~~~~-~~~~~~~h~~~V~~i~~spdg~~l~sgs~----dg~V~vwd~~~~~~---~~~~~~~~~V~~l~  142 (432)
                        +..|.++|+.++. ....+..+....... |+++|..|+..+.    .+.|..+|+.++..   ...+.+...+.  .
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~  332 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T  332 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred             CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence              2489999998763 455666676666665 7777776665543    36799999988765   33344555554  8


Q ss_pred             EccCCcEEEEEECCC---eEEEEeC
Q psy9319         143 WHPKQYLLAYACDDK---YDRKQDC  164 (432)
Q Consensus       143 fspdg~~l~s~s~d~---~I~vwd~  164 (432)
                      |+|++..|+.+..++   .|.+||+
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECT
T ss_pred             EEEECCEEEEEEEECCeeEEEEEEC
Confidence            999998887766543   4555554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.20  E-value=3.8e-05  Score=74.20  Aligned_cols=159  Identities=6%  Similarity=-0.059  Sum_probs=102.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccC------CcCEEEEEEcCCCCE-EEEEe---CCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH------PVTCICIEFDPTGKY-FAVGS---KDA   74 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h------~~~V~~l~~spdg~~-L~sgs---~dg   74 (432)
                      ..+..++++|++.++++.... .......+..||..+++.+..+...      ...+..++++|++.. +++.+   .++
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~-~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~  145 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGN-QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA  145 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHH-HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred             eEeeEEEEcCCCcEEEEcCCC-CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence            456788899988766443211 0001235677888888877666532      235688999986544 45554   678


Q ss_pred             eEEEEeCCCCeeEEEEeeCC-----------------------------CCEEEEEEeeCCCEEEEEeCCC-eEEEEeCC
Q psy9319          75 LVSLWDAAELTCIRTFQRLD-----------------------------WPVRAISFSHDGALIASGSEDL-TIDIAHVE  124 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~-----------------------------~~V~~i~~spdg~~l~sgs~dg-~V~vwd~~  124 (432)
                      .|.+||+.++.....+.+|.                             ..+..++|+|+|+.|+.++.++ .+..++..
T Consensus       146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~  225 (343)
T 2qe8_A          146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA  225 (343)
T ss_dssp             EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred             eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence            99999998877655443321                             2368899999999888887655 56555532


Q ss_pred             ---CCc--------EEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         125 ---SGK--------KVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       125 ---~~~--------~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                         .+.        .+....+.+....++++++|.++++...++.|.+||.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          226 DLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             HhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence               111        0122233445667999999998888888888555554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.19  E-value=1.2e-07  Score=93.24  Aligned_cols=132  Identities=10%  Similarity=0.045  Sum_probs=68.4

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCC-CEE-EEEEeeCCCEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVR-AISFSHDGALIA  110 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~-~i~~spdg~~l~  110 (432)
                      .+..||..+|+.+..+..  +.+.+..+.+++..+++++.|+.|+.||..+|+.+..+..+.. .+. +..+. ++..++
T Consensus        20 ~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~   96 (369)
T 2hz6_A           20 SLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILY   96 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CC
T ss_pred             EEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEE
Confidence            578889899999888876  4555555667787888888999999999998887665543311 110 01111 345678


Q ss_pred             EEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCcee
Q psy9319         111 SGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIK  178 (432)
Q Consensus       111 sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~  178 (432)
                      +|+.|+.|..||..+|+.+..+.....   ..++|++..+++++.|+.        +..||..+|..+
T Consensus        97 ~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~--------v~a~d~~tG~~~  153 (369)
T 2hz6_A           97 MGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYT--------ITMYDTKTRELR  153 (369)
T ss_dssp             CCEEEEEEEEECCC-------------------------EEEEEEEEE--------EECCCSSSSSCC
T ss_pred             EEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCE--------EEEEECCCCCEE
Confidence            888899999999999998887764332   345678888999998888        555555555544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.19  E-value=7.7e-06  Score=80.25  Aligned_cols=139  Identities=9%  Similarity=-0.076  Sum_probs=98.8

Q ss_pred             cceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCee
Q psy9319          17 SLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------KDALVSLWDAAELTC   86 (432)
Q Consensus        17 ~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------~dg~I~iwd~~~~~~   86 (432)
                      ..++++...+.++.. .+.+.|..+++.+.++.....+  .+.++|||+.++.++          .++.|.+||+.+++.
T Consensus        32 ~~~yV~~~~~~~~~d-~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           32 RRSHITLPAYFAGTT-ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TEEEEEECTTTCSSE-EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CeEEEECCccCCccc-eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            334466555666666 8888999999999999876666  799999999988876          367899999999999


Q ss_pred             EEEEeeC-------CCCEEEEEEeeCCCEEEEEeC--CCeEEE--EeCCCCcEEEEEecCCceEEEEEccCC-cEEEEEE
Q psy9319          87 IRTFQRL-------DWPVRAISFSHDGALIASGSE--DLTIDI--AHVESGKKVYDICIQAATFTVAWHPKQ-YLLAYAC  154 (432)
Q Consensus        87 ~~~~~~h-------~~~V~~i~~spdg~~l~sgs~--dg~V~v--wd~~~~~~~~~~~~~~~V~~l~fspdg-~~l~s~s  154 (432)
                      +.++..+       ......+++||||++++.+..  +..|.+  +|+.+   +..+...+.   +.+.|+| ..+++.+
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~  182 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGS  182 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCC
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEc
Confidence            9888643       123568999999999998874  467888  99877   455543322   2234544 3344456


Q ss_pred             CCCeEEEEeC
Q psy9319         155 DDKYDRKQDC  164 (432)
Q Consensus       155 ~d~~I~vwd~  164 (432)
                      .|+.+.+.|+
T Consensus       183 ~dg~~~~vd~  192 (368)
T 1mda_H          183 CPASLAASDL  192 (368)
T ss_dssp             CTTSCEEEEC
T ss_pred             CCCCEEEEEC
Confidence            6777433333

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.17  E-value=1.8e-05  Score=81.45  Aligned_cols=132  Identities=13%  Similarity=0.002  Sum_probs=93.8

Q ss_pred             eeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC------------------------------------
Q psy9319          31 QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA------------------------------------   74 (432)
Q Consensus        31 ~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg------------------------------------   74 (432)
                      ...+.+.|..+++....+.-.. ....++++|+|+++++.+.+.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            3467788998888877766322 335677899999999888553                                    


Q ss_pred             --eEEEEeCCC--Cee-EEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCc------------EEEEEecCC
Q psy9319          75 --LVSLWDAAE--LTC-IRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGK------------KVYDICIQA  136 (432)
Q Consensus        75 --~I~iwd~~~--~~~-~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~------------~~~~~~~~~  136 (432)
                        .|.+.|..+  +.. +..+.. .....++.++|||++++.++ .+.+|.++|+.+..            .+..+....
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             ECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence              367777776  444 444432 23567899999999887776 68899999998653            345555667


Q ss_pred             ceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         137 ATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       137 ~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ....++|+|+|...++...|+.|.+||+
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            7899999999954455567888555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.16  E-value=6.5e-05  Score=79.89  Aligned_cols=141  Identities=9%  Similarity=-0.039  Sum_probs=98.4

Q ss_pred             EEEEeecCcceeeEEEcc--CC-------cCEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCeeEEEEeeCC-CC---
Q psy9319          33 DFKFKEHHKLEEQNILKA--HP-------VTCICIEFDPTGK---YFAVGSKDALVSLWDAAELTCIRTFQRLD-WP---   96 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~L~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~---   96 (432)
                      .+..+|..+|+.+..++.  |.       .++.......+|.   .++.++.+|.++++|..+|+.+....-.. ..   
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence            478889999999887764  21       2222223333565   78899999999999999998874332110 00   


Q ss_pred             -----------------------------------EEEEEEeeCCCEEEEEeC---------------------------
Q psy9319          97 -----------------------------------VRAISFSHDGALIASGSE---------------------------  114 (432)
Q Consensus        97 -----------------------------------V~~i~~spdg~~l~sgs~---------------------------  114 (432)
                                                         -..++++|+..++++.+.                           
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence                                               012688888777776532                           


Q ss_pred             ------------------CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319         115 ------------------DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       115 ------------------dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                                        +|.|..||+.+|+.+..+.+..++....++..+.++++++.|+.        ++.||..+|+
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~--------l~a~D~~tG~  507 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGR--------VIAYAADTGE  507 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE--------EEEEETTTCC
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCc--------EEEEECCCCc
Confidence                              37899999999999998886666555566777889999999999        5555556665


Q ss_pred             eeeee
Q psy9319         177 IKKRK  181 (432)
Q Consensus       177 ~~~~~  181 (432)
                      .+-.+
T Consensus       508 ~lw~~  512 (689)
T 1yiq_A          508 KLWEQ  512 (689)
T ss_dssp             EEEEE
T ss_pred             cceee
Confidence            55444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.13  E-value=8.9e-05  Score=73.94  Aligned_cols=154  Identities=11%  Similarity=0.010  Sum_probs=103.7

Q ss_pred             ccccCCCCcceeeeeeecC-CCceeEEEEeecCcceeeEEEccCCc---CEEEEEEcCCCCEEEEEe-------------
Q psy9319           9 LLGLNPRPSLYQSSVLTDI-SPKQLDFKFKEHHKLEEQNILKAHPV---TCICIEFDPTGKYFAVGS-------------   71 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~-~~~~~~i~~~d~~~~~~~~~l~~h~~---~V~~l~~spdg~~L~sgs-------------   71 (432)
                      .+.+.|++ ++ +++..+. ......+.+.|..+++.+..+....+   .-..+.|+|+++.++++.             
T Consensus       142 ~~~~~pdG-i~-Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          142 TVHCGPDA-IY-ISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEECSSC-EE-EEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             ceeECCCe-EE-EEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            34567888 44 4554442 12335678889999999988863322   234578899999888874             


Q ss_pred             ------CCCeEEEEeCCCCeeEEEEeeC-C-CCEEEEEE--eeCCCEEEEEe------CCCeEEEEeCCCCcE--EEEE-
Q psy9319          72 ------KDALVSLWDAAELTCIRTFQRL-D-WPVRAISF--SHDGALIASGS------EDLTIDIAHVESGKK--VYDI-  132 (432)
Q Consensus        72 ------~dg~I~iwd~~~~~~~~~~~~h-~-~~V~~i~~--spdg~~l~sgs------~dg~V~vwd~~~~~~--~~~~-  132 (432)
                            ...+|.+||+.+++.+.++... . .....+.|  +|++++++.++      .+++|.+|....|..  ...+ 
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId  299 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE  299 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence                  3679999999998888877643 1 24556656  99999888776      567888877655431  1111 


Q ss_pred             -ec-----------------CCceEEEEEccCCcEEEEEEC-CCeEEEEeC
Q psy9319         133 -CI-----------------QAATFTVAWHPKQYLLAYACD-DKYDRKQDC  164 (432)
Q Consensus       133 -~~-----------------~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~  164 (432)
                       ..                 ...+..+.+||||++|+++.. .+.|.+||+
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence             10                 234678999999999998875 456555443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.09  E-value=0.00014  Score=67.42  Aligned_cols=157  Identities=6%  Similarity=-0.038  Sum_probs=103.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcC-EEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVT-CICIEFDPTGKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~sgs~dg~I~iwd~~~   83 (432)
                      .+.+.+.|+. +.++ .+.+.++.     ++..|..+++.+..+ -.... .-.+++.. +.+.++.-.++.+.+||..+
T Consensus        55 ~ftqGL~~~~-~~Ly-~stG~~g~-----v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFF-ESTGHQGT-----LRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             CCEEEEEEET-TEEE-EEETTTTE-----EEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTT
T ss_pred             cccceEEEEC-CEEE-EEcCCCCE-----EEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCc
Confidence            4556666763 3444 55444433     788899999888877 32221 12344432 24444555688999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec---CC---ceEEEEEccCCcEEEEEECCC
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI---QA---ATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~---~~---~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ++.+.++... ..  ...+++|+..|+.+..++.|.++|..+.+.+..+..   ..   .+..+.|. +|.+++..-.++
T Consensus       126 l~~~~ti~~~-~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          126 PQRERTTRYS-GE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             TEEEEEEECS-SC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             CcEEEEEeCC-Cc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence            9999888743 22  234456788888888899999999999999888852   21   34567776 675444333455


Q ss_pred             eEEEEeCCceEEeecCCCceeeeec
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      .        |.+.|..+|+++..+.
T Consensus       202 ~--------I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          202 D--------VLEIDPATGTVVGVID  218 (268)
T ss_dssp             E--------EEEECTTTCBEEEEEE
T ss_pred             e--------EEEEeCCCCcEEEEEE
Confidence            5        7888888888877664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.03  E-value=0.00067  Score=62.18  Aligned_cols=162  Identities=12%  Similarity=0.010  Sum_probs=106.3

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCE-EEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTC-ICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V-~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ...+.+-+.|++ +.++ .+...++.   -.++..|..+++.+..+.-..... -.+++. .+++....-.++.+.+||.
T Consensus        19 ~~~ftqGL~~~~-~~Ly-estG~~g~---S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           19 TTAFTEGLFYLR-GHLY-ESTGETGR---SSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             TTCCEEEEEEET-TEEE-EEECCTTS---CEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEET
T ss_pred             CccccccEEEEC-CEEE-EECCCCCC---ceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEEC
Confidence            445667788876 4455 44444332   256778899999988876433321 233333 2334444556889999999


Q ss_pred             CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC------CceEEEEEccCCcEEEEEEC
Q psy9319          82 AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ------AATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        82 ~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~------~~V~~l~fspdg~~l~s~s~  155 (432)
                      .+.+.+.++.... .  ...+++++..|+.+..++.|.++|..+.+.+..+...      ..+..+.|. +|..++..-.
T Consensus        93 ~tl~~~~ti~~~~-~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X           93 ATLTPRARFRYPG-E--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             TTTEEEEEEECSS-C--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CcCcEEEEEeCCC-C--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence            9999999887432 2  2344567877777778899999999999998888621      234556665 5654443334


Q ss_pred             CCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         156 DKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      +..        |.+.|..+|.++..+.
T Consensus       169 s~~--------I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          169 TSR--------IARIDPASGKVVAWID  187 (243)
T ss_dssp             TTE--------EEEECTTTCBEEEEEE
T ss_pred             CCe--------EEEEECCCCCEEEEEE
Confidence            445        7777888887777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.02  E-value=0.00021  Score=66.17  Aligned_cols=160  Identities=10%  Similarity=0.051  Sum_probs=106.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-SKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s~dg~I~iwd~~~   83 (432)
                      .+.+-+.|+ ++.++ .+.+.++   .-.++..|..+++.+..+.-.... ......+++..|+.. -.++.+.+||..+
T Consensus        43 ~ftqGL~~~-~~~Ly-estG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~-FgeGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           43 AFTEGFFYR-NGYFY-ESTGLNG---RSSIRKVDIESGKTLQQIELGKRY-FGEGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             CEEEEEEEE-TTEEE-EEEEETT---EEEEEEECTTTCCEEEEEECCTTC-CEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             cccceEEEE-CCEEE-EECCCCC---CceEEEEECCCCcEEEEEecCCcc-ceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            455667777 45544 5544443   235778899999988887654332 222233345555544 4588999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec---C---CceEEEEEccCCcEEEEEECCC
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI---Q---AATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~---~---~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ++.+.++....   ....+++|+..|+.+..++.|.++|..+.+.+..+..   .   ..+..+.|. +|...+..-.++
T Consensus       117 ~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~  192 (262)
T 3nol_A          117 LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN  192 (262)
T ss_dssp             CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC
Confidence            99998887432   2244557888787777788999999999999888762   2   224457776 676544333455


Q ss_pred             eEEEEeCCceEEeecCCCceeeeec
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                      .        |.+.|..+|+++..+.
T Consensus       193 ~--------I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          193 K--------IVRIDPETGKVTGIID  209 (262)
T ss_dssp             E--------EEEECTTTCBEEEEEE
T ss_pred             e--------EEEEECCCCcEEEEEE
Confidence            5        7777888887777664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.98  E-value=5.9e-07  Score=88.24  Aligned_cols=141  Identities=11%  Similarity=-0.036  Sum_probs=66.1

Q ss_pred             cCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcC-EE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEE
Q psy9319          12 LNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVT-CI-CIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT   89 (432)
Q Consensus        12 ~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~-V~-~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~   89 (432)
                      +.+++..+ ++++.|+     .+..||..+|+.+..+..+... +. +..++ ++..+++|+.++.|..||..+|+.+..
T Consensus        45 ~~~~g~~~-v~~s~dg-----~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           45 THVEEPAF-LPDPNDG-----SLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             -----CCE-EECTTTC-----CEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------
T ss_pred             eEcCCCEE-EEeCCCC-----EEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            33444444 4434444     3566676677776665543211 10 01111 345677888899999999999998877


Q ss_pred             EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCC---cEEEEEECCCeEEEEeC
Q psy9319          90 FQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQ---YLLAYACDDKYDRKQDC  164 (432)
Q Consensus        90 ~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg---~~l~s~s~d~~I~vwd~  164 (432)
                      +..+.    ...++|++..+++++.|+.|..||..+|+.+..+.... ....+++++.   ..+++++.++.|..||.
T Consensus       118 ~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          118 LSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             -------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             ecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEEC
Confidence            76543    24567788899999999999999999998776654211 1223344432   45677888999555554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.98  E-value=0.00019  Score=71.62  Aligned_cols=143  Identities=5%  Similarity=0.003  Sum_probs=99.0

Q ss_pred             CCCcceeeeeeecCCCceeEEEEeecCcc----eeeEEEc------c-CCcCEEEEEEcCCCCEEEEEeCC------CeE
Q psy9319          14 PRPSLYQSSVLTDISPKQLDFKFKEHHKL----EEQNILK------A-HPVTCICIEFDPTGKYFAVGSKD------ALV   76 (432)
Q Consensus        14 p~~~~l~~s~s~D~~~~~~~i~~~d~~~~----~~~~~l~------~-h~~~V~~l~~spdg~~L~sgs~d------g~I   76 (432)
                      ++...+++++..+..+     ++.|..+.    +...++.      . ....-..+..+|+| +++++..+      +.|
T Consensus        93 ~~r~~l~v~~l~s~~I-----~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRSSRI-----YIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTTCCE-----EEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCCCeE-----EEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            7777777777665544     44444333    6666663      1 11234466778999 76666555      789


Q ss_pred             EEEeCCCCeeEEEEeeCC---CCEEEEEEeeCCCEEEEEe-------------------CCCeEEEEeCCCCcEEEEEec
Q psy9319          77 SLWDAAELTCIRTFQRLD---WPVRAISFSHDGALIASGS-------------------EDLTIDIAHVESGKKVYDICI  134 (432)
Q Consensus        77 ~iwd~~~~~~~~~~~~h~---~~V~~i~~spdg~~l~sgs-------------------~dg~V~vwd~~~~~~~~~~~~  134 (432)
                      .++|..+++.+.++....   ..-+.+.|+|+++.+++..                   .+.+|.+||+.+++.+..+..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            999999999988886332   2345688999999888885                   368999999999988888864


Q ss_pred             C---CceEEEEE--ccCCcEEEEEEC------CCeEEEE
Q psy9319         135 Q---AATFTVAW--HPKQYLLAYACD------DKYDRKQ  162 (432)
Q Consensus       135 ~---~~V~~l~f--spdg~~l~s~s~------d~~I~vw  162 (432)
                      .   .....+.|  +|+|+++++++.      ++.|.+|
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~  285 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW  285 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence            3   23455655  999998887774      5565443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.92  E-value=0.0025  Score=58.59  Aligned_cols=162  Identities=7%  Similarity=-0.114  Sum_probs=91.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC---CCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK---DALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~---dg~I~iwd~   81 (432)
                      .....++++|.+..+.++....     ..|.+++.........+.........++++|++..|+.+..   .+.|..+++
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~  153 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQL-----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             CCccEEEEEecCCeEEEEECCC-----CEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence            3445667777544443443222     23444444322221222222245689999996655554443   368888888


Q ss_pred             CCCeeEEEEe-eCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE-CCCe
Q psy9319          82 AELTCIRTFQ-RLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC-DDKY  158 (432)
Q Consensus        82 ~~~~~~~~~~-~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~  158 (432)
                      ... ....+. ........++++|++..|+.+. ..+.|.++|+........+........++..  +..|+.+. ..+.
T Consensus       154 dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~  230 (267)
T 1npe_A          154 DGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS  230 (267)
T ss_dssp             TSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE
T ss_pred             CCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe
Confidence            643 333332 2335688999999877666555 5689999999765433333333334566654  44444444 4566


Q ss_pred             EEEEeCCceEEeecCCCceeeeec
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                              |.+++..++..+..+.
T Consensus       231 --------v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          231 --------VIAMDLAISKEMDTFH  246 (267)
T ss_dssp             --------EEEEETTTTEEEEEEC
T ss_pred             --------EEEEeCCCCCceEEEc
Confidence                    6666766666665543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.89  E-value=0.00042  Score=64.58  Aligned_cols=117  Identities=9%  Similarity=-0.095  Sum_probs=78.1

Q ss_pred             eeeEEEccCCc--CEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCeeEEEEeeCC-CCEEEEEEeeCCCEEEEEe-CCC
Q psy9319          43 EEQNILKAHPV--TCICIEFDPTGKYFAVGSK--DALVSLWDAAELTCIRTFQRLD-WPVRAISFSHDGALIASGS-EDL  116 (432)
Q Consensus        43 ~~~~~l~~h~~--~V~~l~~spdg~~L~sgs~--dg~I~iwd~~~~~~~~~~~~h~-~~V~~i~~spdg~~l~sgs-~dg  116 (432)
                      +.+.++. |..  ....++|+|++.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++  ++..|+.+. .++
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCS
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCC
Confidence            4455553 332  3578999998755555543  5799999999999888775322 12234444  455666655 578


Q ss_pred             eEEEEeCCCCcEEEEEecC-CceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         117 TIDIAHVESGKKVYDICIQ-AATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       117 ~V~vwd~~~~~~~~~~~~~-~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      .+.++|..+.+.+..+... ..  ...+++||..++++..++.|.++|.
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~  133 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDP  133 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECT
T ss_pred             EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEEC
Confidence            9999999999999988754 22  2345667877777666777444443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.75  E-value=0.00018  Score=77.18  Aligned_cols=154  Identities=13%  Similarity=0.062  Sum_probs=93.8

Q ss_pred             ccccccC-CCCcceeeeeeecCCCceeEEEEeecCcc-eeeE-EEccCCcCEEEEEEcCCCCEEEEEeCC-----CeEEE
Q psy9319           7 IPLLGLN-PRPSLYQSSVLTDISPKQLDFKFKEHHKL-EEQN-ILKAHPVTCICIEFDPTGKYFAVGSKD-----ALVSL   78 (432)
Q Consensus         7 I~~l~~~-p~~~~l~~s~s~D~~~~~~~i~~~d~~~~-~~~~-~l~~h~~~V~~l~~spdg~~L~sgs~d-----g~I~i   78 (432)
                      +....|| |++..++.+...++. ....|+++|+.++ +.+. .+..   ....++|+|||+.|+..+.+     ..|.+
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~-~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGN-EVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSS-SCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCC-ceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            4567899 999987544433332 3457888898887 5321 1211   13467899999888777665     26888


Q ss_pred             EeCCCCee--EEEEe-eCCCCEEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCc-EE--EEEe--cCCceEEEEEccCC
Q psy9319          79 WDAAELTC--IRTFQ-RLDWPVRAISFSHDGALIASGSE---DLTIDIAHVESGK-KV--YDIC--IQAATFTVAWHPKQ  147 (432)
Q Consensus        79 wd~~~~~~--~~~~~-~h~~~V~~i~~spdg~~l~sgs~---dg~V~vwd~~~~~-~~--~~~~--~~~~V~~l~fspdg  147 (432)
                      +++.++..  ...+. .......++.|||||++|+..+.   ...|+++|+.++. ..  ..+.  ......++.|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88877642  23333 23345678899999998887653   3468899998762 22  3332  33445666665444


Q ss_pred             cEEEEEECC--C--eEEEEeC
Q psy9319         148 YLLAYACDD--K--YDRKQDC  164 (432)
Q Consensus       148 ~~l~s~s~d--~--~I~vwd~  164 (432)
                      .+++.+..+  +  .|..+|+
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEET
T ss_pred             EEEEEeCCCCCCCcEEEEEcC
Confidence            444444433  2  4445554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.71  E-value=0.00079  Score=62.30  Aligned_cols=117  Identities=8%  Similarity=-0.039  Sum_probs=80.9

Q ss_pred             eeEEEccCCc--CEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeE
Q psy9319          44 EQNILKAHPV--TCICIEFDPTGKYFAVGSKDA--LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTI  118 (432)
Q Consensus        44 ~~~~l~~h~~--~V~~l~~spdg~~L~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V  118 (432)
                      .+..+ .|..  ....+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.-. .........+++..|+... .++.+
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence            44455 3433  24688888 677777777776  8999999999988877643 3444444555666777666 57899


Q ss_pred             EEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         119 DIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      .++|..+.+.+..+.....-..++  +++..|+.+..++.|.++|..
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~  154 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPE  154 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTT
T ss_pred             EEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCC
Confidence            999999999999998554333444  567777766656775555543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.69  E-value=0.0019  Score=67.00  Aligned_cols=140  Identities=15%  Similarity=0.055  Sum_probs=93.2

Q ss_pred             EEEEeecCcceeeEEEcc--C--------CcCEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCeeEEEEeeCC-----
Q psy9319          33 DFKFKEHHKLEEQNILKA--H--------PVTCICIEFDPTGK---YFAVGSKDALVSLWDAAELTCIRTFQRLD-----   94 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~--h--------~~~V~~l~~spdg~---~L~sgs~dg~I~iwd~~~~~~~~~~~~h~-----   94 (432)
                      .+...|..+|+.+..++.  |        ..++. +...++|+   .++.++.+|.+.++|..+|+.+..+....     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            467778889988877653  2        12222 22234674   57788999999999999998876654221     


Q ss_pred             --------CCE--------------------------EEEEEeeCCCEEEEEe---------------------------
Q psy9319          95 --------WPV--------------------------RAISFSHDGALIASGS---------------------------  113 (432)
Q Consensus        95 --------~~V--------------------------~~i~~spdg~~l~sgs---------------------------  113 (432)
                              .++                          ..++++|+..+++..+                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    111                          2357888777776653                           


Q ss_pred             ----------CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         114 ----------EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       114 ----------~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                                .++.|..||+.+|+.+..+.....+....+...+..+++++.|+.        +..+|..+|+.+-.+
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~--------l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGY--------LKALDNKDGKELWNF  501 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE--------EEEEETTTCCEEEEE
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCe--------EEEEECCCCCEEEEE
Confidence                      357899999999999888876555444444445667777889999        555555555555444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.68  E-value=0.0054  Score=56.34  Aligned_cols=151  Identities=9%  Similarity=-0.037  Sum_probs=89.7

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCee
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYF-AVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~~~~~   86 (432)
                      ..++++|.+..+..+....     ..|..++.........+.........++++|++..| ++....+.|.++++.....
T Consensus        39 ~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            4666777554443443222     244555554443333333333567899999975555 4555567999999874332


Q ss_pred             EEEEeeCCCCEEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEE-CCCeEE
Q psy9319          87 IRTFQRLDWPVRAISFSHDGALIASGSE---DLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYAC-DDKYDR  160 (432)
Q Consensus        87 ~~~~~~h~~~V~~i~~spdg~~l~sgs~---dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s-~d~~I~  160 (432)
                      .............++++|++..|+.+..   .+.|..+++.... ...+.  .......++|+|++..|+.+. ..+.|.
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            2222222256789999997666655553   4688888876433 22232  234578899999876665554 456755


Q ss_pred             EEeC
Q psy9319         161 KQDC  164 (432)
Q Consensus       161 vwd~  164 (432)
                      ++|.
T Consensus       193 ~~~~  196 (267)
T 1npe_A          193 CLNP  196 (267)
T ss_dssp             EEET
T ss_pred             EEec
Confidence            5554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.64  E-value=0.00066  Score=71.85  Aligned_cols=141  Identities=9%  Similarity=-0.037  Sum_probs=95.0

Q ss_pred             EEEEeecCcceeeEEEcc--CC-------cCEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCeeEEEEeeCC------
Q psy9319          33 DFKFKEHHKLEEQNILKA--HP-------VTCICIEFDPTGK---YFAVGSKDALVSLWDAAELTCIRTFQRLD------   94 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~L~sgs~dg~I~iwd~~~~~~~~~~~~h~------   94 (432)
                      .+..+|..+|+.+..++.  |.       .+.....+..+|.   .++.++.+|.++++|..+|+.+..+....      
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            477889999999887764  32       2333333444665   68899999999999999998874433111      


Q ss_pred             ------CCE------------------------EEEEEeeCCCEEEEEe-------------------------------
Q psy9319          95 ------WPV------------------------RAISFSHDGALIASGS-------------------------------  113 (432)
Q Consensus        95 ------~~V------------------------~~i~~spdg~~l~sgs-------------------------------  113 (432)
                            .++                        ..++++|+..+++...                               
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence                  000                        1267788766655421                               


Q ss_pred             -----CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         114 -----EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       114 -----~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                           .+|.|..||+.+|+.+.......++....+...+.++++++.|+.        +++||..+|+.+..+
T Consensus       431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~--------l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ--------MHAYSADKGEALWQF  495 (668)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE--------EEEEETTTCCEEEEE
T ss_pred             CCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCccc--------chhhhhhcChhheEe
Confidence                 237899999999999988876655555555667888899999999        555555555554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.64  E-value=0.0025  Score=67.65  Aligned_cols=102  Identities=10%  Similarity=0.064  Sum_probs=73.2

Q ss_pred             eeEEEEeecCcceeeEEEccC-------------------------------CcCEEEEEEcCCCCEEEEEeCCCe----
Q psy9319          31 QLDFKFKEHHKLEEQNILKAH-------------------------------PVTCICIEFDPTGKYFAVGSKDAL----   75 (432)
Q Consensus        31 ~~~i~~~d~~~~~~~~~l~~h-------------------------------~~~V~~l~~spdg~~L~sgs~dg~----   75 (432)
                      ...+..+|..+|+.+..+...                               ......++++|++..++.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            356778899999888776421                               011125788998889998887763    


Q ss_pred             ---------------EEEEeCCCCeeEEEEee--CC-------CCEEEEEEeeCCC---EEEEEeCCCeEEEEeCCCCcE
Q psy9319          76 ---------------VSLWDAAELTCIRTFQR--LD-------WPVRAISFSHDGA---LIASGSEDLTIDIAHVESGKK  128 (432)
Q Consensus        76 ---------------I~iwd~~~~~~~~~~~~--h~-------~~V~~i~~spdg~---~l~sgs~dg~V~vwd~~~~~~  128 (432)
                                     |..||..+|+.+-.+..  |.       .++.......+|.   .++.++.+|.++++|..+|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           99999999998877764  21       2222333334665   788899999999999999998


Q ss_pred             EEEE
Q psy9319         129 VYDI  132 (432)
Q Consensus       129 ~~~~  132 (432)
                      +...
T Consensus       342 l~~~  345 (689)
T 1yiq_A          342 LSAK  345 (689)
T ss_dssp             EEEE
T ss_pred             eccc
Confidence            8554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.60  E-value=0.0012  Score=61.21  Aligned_cols=117  Identities=9%  Similarity=-0.019  Sum_probs=79.5

Q ss_pred             eeeEEEccCC--cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEE
Q psy9319          43 EEQNILKAHP--VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTID  119 (432)
Q Consensus        43 ~~~~~l~~h~--~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~  119 (432)
                      +.+..+ .|.  .....+.|+. +.++.+.+.+|.|+++|+.+++.+..+ -. .........+++..|+... .++.+.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEE
Confidence            344455 343  2346888874 667778888899999999999988777 22 3333333445555555554 688999


Q ss_pred             EEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         120 IAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       120 vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      ++|..+.+.+..+.....-..++  +++..|+.+..++.|.++|..
T Consensus       120 V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~  163 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPD  163 (268)
T ss_dssp             EEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTT
T ss_pred             EEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCC
Confidence            99999999999998554444454  567777777667774444443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.59  E-value=0.00072  Score=69.65  Aligned_cols=133  Identities=11%  Similarity=0.008  Sum_probs=96.7

Q ss_pred             EEEEeecCcceeeEEEccC-CcCEEEEEE-c-CCCCEEEEEe------------------CCCeEEEEeCCCCeeEEEEe
Q psy9319          33 DFKFKEHHKLEEQNILKAH-PVTCICIEF-D-PTGKYFAVGS------------------KDALVSLWDAAELTCIRTFQ   91 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h-~~~V~~l~~-s-pdg~~L~sgs------------------~dg~I~iwd~~~~~~~~~~~   91 (432)
                      .+.+-|..+.++...+.-- ......+++ + |++.++++++                  .++.+.+.|..+.+.+.++.
T Consensus       113 rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~  192 (595)
T 1fwx_A          113 RVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL  192 (595)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence            3555677888887755421 244678887 5 9999998885                  23579999999988887776


Q ss_pred             eCCCCEEEEEEeeCCCEEEEEeCCC--------------------------------------eEEEEeCCC--CcE-EE
Q psy9319          92 RLDWPVRAISFSHDGALIASGSEDL--------------------------------------TIDIAHVES--GKK-VY  130 (432)
Q Consensus        92 ~h~~~V~~i~~spdg~~l~sgs~dg--------------------------------------~V~vwd~~~--~~~-~~  130 (432)
                      -.. ....++++|+|.++++.+.+.                                      .|.|.|..+  +.. +.
T Consensus       193 Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~  271 (595)
T 1fwx_A          193 VSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR  271 (595)
T ss_dssp             ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEE
T ss_pred             eCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEE
Confidence            433 446788999999999888543                                      477788877  555 66


Q ss_pred             EEecCCceEEEEEccCCcEEEEEE-CCCeEEEEeCCc
Q psy9319         131 DICIQAATFTVAWHPKQYLLAYAC-DDKYDRKQDCGN  166 (432)
Q Consensus       131 ~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~~~  166 (432)
                      .+.......++.++|||+++++++ .+.+|.++|+..
T Consensus       272 ~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~  308 (595)
T 1fwx_A          272 YIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  308 (595)
T ss_dssp             EEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             EEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence            776666778899999999877765 566766666654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.58  E-value=0.0052  Score=58.20  Aligned_cols=151  Identities=5%  Similarity=-0.162  Sum_probs=90.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc--------------------CCcCEEEEEEcC-C
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA--------------------HPVTCICIEFDP-T   63 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~--------------------h~~~V~~l~~sp-d   63 (432)
                      +....++++|++.++.+. ..     ...+..++..++.. ..+..                    ....+.++++++ +
T Consensus        19 ~~p~~i~~d~~g~~l~v~-~~-----~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTS-VQ-----DGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             SCCCCEECCTTCSSEEEE-CT-----TSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCceEEEEcCCCCEEEEE-cC-----CCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            345667888888755343 22     23455556554332 22210                    013578899998 6


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCeeEEEEee-----CCCCEEEEEEee-CCCEEEEEeC-----------------CCeEEE
Q psy9319          64 GKYFAVGSKDALVSLWDAAELTCIRTFQR-----LDWPVRAISFSH-DGALIASGSE-----------------DLTIDI  120 (432)
Q Consensus        64 g~~L~sgs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~i~~sp-dg~~l~sgs~-----------------dg~V~v  120 (432)
                      |. |+.+...+.|..+|..++.. ..+..     .......+++.| +|.++++...                 ++.|..
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            65 44454455688899876543 22221     123578899999 9987766432                 367999


Q ss_pred             EeCCCCcEEEEEecCCceEEEEEccCCcEEEEE-ECCCeEEEEeC
Q psy9319         121 AHVESGKKVYDICIQAATFTVAWHPKQYLLAYA-CDDKYDRKQDC  164 (432)
Q Consensus       121 wd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~-s~d~~I~vwd~  164 (432)
                      ||..++..............++|+|+|.+|+.+ +..+.|..|++
T Consensus       170 ~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~  214 (322)
T 2fp8_A          170 YDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWL  214 (322)
T ss_dssp             EETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEES
T ss_pred             EeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            998777654333333445679999999866655 44567544443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.53  E-value=0.0039  Score=57.06  Aligned_cols=117  Identities=8%  Similarity=-0.062  Sum_probs=79.3

Q ss_pred             eeEEEccCC--cCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeE
Q psy9319          44 EQNILKAHP--VTCICIEFDPTGKYFAVGSKDA--LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTI  118 (432)
Q Consensus        44 ~~~~l~~h~--~~V~~l~~spdg~~L~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V  118 (432)
                      .+..+ .|.  .....+.|++ +.++.+.+.+|  .|+.+|+.+++.+..+.-. .........+++..|+... .++.+
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEE
Confidence            34444 444  3466888987 56666666654  8999999999988877633 2333344445556666555 58899


Q ss_pred             EEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         119 DIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      .++|..+.+.+.++.....-..++  +++..|+.+..++.|.++|..
T Consensus        88 ~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~  132 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPD  132 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTT
T ss_pred             EEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCC
Confidence            999999999999998655445555  567666666667775555543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.47  E-value=0.0015  Score=69.24  Aligned_cols=79  Identities=11%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCce--EEEEEccCCcEEE
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT--FTVAWHPKQYLLA  151 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V--~~l~fspdg~~l~  151 (432)
                      +.|..||+.+++.+-.+. +..++.+..++.++.+++.++.||.+++||..+|+.+..+.....+  .-+.|.++|+.++
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            789999999999887776 4445556667788889999999999999999999999998744332  3366778886554


Q ss_pred             EE
Q psy9319         152 YA  153 (432)
Q Consensus       152 s~  153 (432)
                      ..
T Consensus       536 ~~  537 (677)
T 1kb0_A          536 SV  537 (677)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.004  Score=62.12  Aligned_cols=149  Identities=7%  Similarity=0.007  Sum_probs=87.6

Q ss_pred             cccccccCCC-CcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-CC----eEEEE
Q psy9319           6 FIPLLGLNPR-PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-DA----LVSLW   79 (432)
Q Consensus         6 ~I~~l~~~p~-~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-dg----~I~iw   79 (432)
                      ....++++|. ...+.++-..      ..|..+|...+... .+.........++|+++|..|+.+.. .+    .+.++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~------~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ------HPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT------EEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCC------CcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence            3456777762 3333233211      45666676655433 33334556789999999996665554 22    34444


Q ss_pred             eCCCCeeE--EEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEE
Q psy9319          80 DAAELTCI--RTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        80 d~~~~~~~--~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s  154 (432)
                      +.. +...  ..+.. ......++++| +|.++++-..++.|..++..++.......  .......++|+|+|++|+.+.
T Consensus       211 ~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          211 TRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             EGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             eCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            433 2221  22322 23456788999 67766666678899999998765433332  224477899999999655554


Q ss_pred             -CCCeEEEEe
Q psy9319         155 -DDKYDRKQD  163 (432)
Q Consensus       155 -~d~~I~vwd  163 (432)
                       ..+.|..++
T Consensus       289 ~~~~~I~~~~  298 (430)
T 3tc9_A          289 VNQHYILRSD  298 (430)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCEEEEEe
Confidence             556644443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.37  E-value=0.002  Score=60.62  Aligned_cols=132  Identities=15%  Similarity=0.066  Sum_probs=89.1

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      .+..+|.. ++....+..+...+.++...++|. +..++.++.|..||.. +.....+......+.++.+.+++.+++ +
T Consensus       118 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~  193 (330)
T 3hxj_A          118 HLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-G  193 (330)
T ss_dssp             EEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-E
T ss_pred             EEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-E
Confidence            34555665 666655555555566677777776 5567778999999998 777766665556677777777877554 4


Q ss_pred             eCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeec
Q psy9319         113 SEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGF  172 (432)
Q Consensus       113 s~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~  172 (432)
                      +  +.|..+| .++..+.... ....+.++..+++|.+. .++.++.|..+|...-.+|..
T Consensus       194 t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g~~~~~~  250 (330)
T 3hxj_A          194 S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINPDGTEKWRF  250 (330)
T ss_dssp             S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECTTSCEEEEE
T ss_pred             e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECCCCCEeEEe
Confidence            4  7799999 7777776665 34557788888887644 466677765555433344443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.36  E-value=0.0026  Score=59.82  Aligned_cols=123  Identities=15%  Similarity=0.068  Sum_probs=81.6

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      .+..++.. +.....+......+.++.+.++|.+++ ++  +.|..+| .++.....+......+.++...++|. |..+
T Consensus       158 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~  231 (330)
T 3hxj_A          158 YLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVT  231 (330)
T ss_dssp             EEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEE
T ss_pred             EEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEE
Confidence            45666766 666666665556677777878887554 44  7899999 67777666665556688888888876 4556


Q ss_pred             eCCCeEEEEeCCCCcEEEEEecC-CceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         113 SEDLTIDIAHVESGKKVYDICIQ-AATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       113 s~dg~V~vwd~~~~~~~~~~~~~-~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      +.++.|..+|. ++..+..+... ..+.++.+.+++. |+.++.++.|..+|
T Consensus       232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            66778888884 66666666533 3344566666665 55577777744444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.33  E-value=0.016  Score=60.02  Aligned_cols=141  Identities=15%  Similarity=0.131  Sum_probs=90.6

Q ss_pred             eEEEEeecCcceeeEEEcc--CC--------cCEEEEEEc-CCCC---EEEEEeCCCeEEEEeCCCCeeEEEEeeCC---
Q psy9319          32 LDFKFKEHHKLEEQNILKA--HP--------VTCICIEFD-PTGK---YFAVGSKDALVSLWDAAELTCIRTFQRLD---   94 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg~---~L~sgs~dg~I~iwd~~~~~~~~~~~~h~---   94 (432)
                      ..+..+|..+|+.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|..+|+.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            4577789999999887753  32        2222 2222 4674   78889999999999999998876654321   


Q ss_pred             ----------CCE--------------------------------EEEEEeeCCCEEEEEe-------------------
Q psy9319          95 ----------WPV--------------------------------RAISFSHDGALIASGS-------------------  113 (432)
Q Consensus        95 ----------~~V--------------------------------~~i~~spdg~~l~sgs-------------------  113 (432)
                                .++                                ..++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      000                                1245666544444332                   


Q ss_pred             --------------CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceee
Q psy9319         114 --------------EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       114 --------------~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~  179 (432)
                                    .+|.|..||+.+|+.+.......++..-.....+.++++++.|+.        ++.||..+|+.+-
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~--------l~A~D~~tG~~lW  521 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGY--------FKAFDAKSGKELW  521 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSE--------EEEEETTTCCEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCc--------EEEEECCCCCEEE
Confidence                          258899999999999888875544433222334667888999999        5555555555554


Q ss_pred             ee
Q psy9319         180 RK  181 (432)
Q Consensus       180 ~~  181 (432)
                      .+
T Consensus       522 ~~  523 (582)
T 1flg_A          522 KF  523 (582)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.31  E-value=0.021  Score=52.58  Aligned_cols=153  Identities=10%  Similarity=0.076  Sum_probs=91.2

Q ss_pred             CCCC-CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy9319           1 MEGQ-NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSL   78 (432)
Q Consensus         1 ~~g~-n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~i   78 (432)
                      |||. +.+..++++|++..+.+. .+ .   ...|...|.. ++.+..+. +.....-.+++.+++.++++.-.++.+.+
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV-~d-~---~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFST-IN-K---PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEE-EE-T---TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEE-EC-C---CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            3455 457889999987655332 22 2   2334455665 77777764 22356788899998887777656788999


Q ss_pred             EeCCCCee---EEEEe------eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC---CCcEEEEEe--------cCCce
Q psy9319          79 WDAAELTC---IRTFQ------RLDWPVRAISFSHDGALIASGSEDLTIDIAHVE---SGKKVYDIC--------IQAAT  138 (432)
Q Consensus        79 wd~~~~~~---~~~~~------~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~---~~~~~~~~~--------~~~~V  138 (432)
                      +++.....   +....      ........++|+|.+..|+++.......+|.+.   .+..+..+.        ....+
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            98764332   22221      123456899999988777777654444444432   122222221        22347


Q ss_pred             EEEEEccCCc-EEEEEECCCeE
Q psy9319         139 FTVAWHPKQY-LLAYACDDKYD  159 (432)
Q Consensus       139 ~~l~fspdg~-~l~s~s~d~~I  159 (432)
                      .+++++|... +++.+..+..+
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L  197 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRAL  197 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEE
T ss_pred             eeEEEcCCCCeEEEEECCCCeE
Confidence            8899999654 45555555553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.30  E-value=0.009  Score=57.64  Aligned_cols=127  Identities=9%  Similarity=-0.024  Sum_probs=80.9

Q ss_pred             EEEEeecCcceeeEEEccC---------CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEe
Q psy9319          33 DFKFKEHHKLEEQNILKAH---------PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFS  103 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h---------~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~s  103 (432)
                      .+..+|..+++.+......         ...+.+. ...++..++.++.++.|..+|..+|+.+-.+............ 
T Consensus        64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-  141 (376)
T 3q7m_A           64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-  141 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-
T ss_pred             eEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-
Confidence            5667788888887665542         1223222 1224567888889999999999999887666543322111222 


Q ss_pred             eCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceE------EEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         104 HDGALIASGSEDLTIDIAHVESGKKVYDICIQAATF------TVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       104 pdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~------~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                       .+..++.++.++.|..+|..+|+.+........+.      .....  +..+++++.++.+..+|.
T Consensus       142 -~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          142 -SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             -ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred             -ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence             24578888899999999999999988876443332      22222  345677777888444444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.28  E-value=0.016  Score=55.33  Aligned_cols=152  Identities=10%  Similarity=0.064  Sum_probs=100.4

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEE-Ecc----CC--cCEEEEEE---cCCCCEEEEEe------
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNI-LKA----HP--VTCICIEF---DPTGKYFAVGS------   71 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~-l~~----h~--~~V~~l~~---spdg~~L~sgs------   71 (432)
                      .+..|++....+.++....     ..|..|+...+..... +.+    ..  ..+..+.|   .|+++++++..      
T Consensus        16 E~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             SCEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cCccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            6677887666665664333     4556667654433322 222    11  13679999   68888877543      


Q ss_pred             -------CCCeEEEEeCC---CCeeEEEEe--eC-----------CCCEEEEEEeeCCCEEEEEeCC-CeEEEEeCCCCc
Q psy9319          72 -------KDALVSLWDAA---ELTCIRTFQ--RL-----------DWPVRAISFSHDGALIASGSED-LTIDIAHVESGK  127 (432)
Q Consensus        72 -------~dg~I~iwd~~---~~~~~~~~~--~h-----------~~~V~~i~~spdg~~l~sgs~d-g~V~vwd~~~~~  127 (432)
                             .+..|..||+.   +++.+....  ..           ......++..++|+..++++.. +.|...+.....
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence                   25779999999   777655443  11           1248899999999999999888 888888876443


Q ss_pred             EEEEEe--c-----CCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         128 KVYDIC--I-----QAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       128 ~~~~~~--~-----~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                       +..+.  .     ......|+++|+|..|++....+.+.-+|+.
T Consensus       171 -~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 -VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             -EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             -EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence             33221  1     1225689999999988888778886666654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.26  E-value=0.014  Score=55.09  Aligned_cols=154  Identities=13%  Similarity=-0.031  Sum_probs=91.5

Q ss_pred             CcccccccCC-CCcceeeeeeecC-----------CCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEE-e
Q psy9319           5 NFIPLLGLNP-RPSLYQSSVLTDI-----------SPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG-S   71 (432)
Q Consensus         5 n~I~~l~~~p-~~~~l~~s~s~D~-----------~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sg-s   71 (432)
                      +....+.+.| ++.++++......           ......+..++..++.......+ ......++|+|+|..|+.+ +
T Consensus       126 ~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~  204 (322)
T 2fp8_A          126 KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEF  204 (322)
T ss_dssp             SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEG
T ss_pred             cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeC
Confidence            3456788888 8876644322100           01124566667655544322222 1234578999999866555 5


Q ss_pred             CCCeEEEEeCCCCe--eEEEEeeCCCCEEEEEEeeCCCEEEEEeC----------CCeEEEEeCCCCcEEEEEecC----
Q psy9319          72 KDALVSLWDAAELT--CIRTFQRLDWPVRAISFSHDGALIASGSE----------DLTIDIAHVESGKKVYDICIQ----  135 (432)
Q Consensus        72 ~dg~I~iwd~~~~~--~~~~~~~h~~~V~~i~~spdg~~l~sgs~----------dg~V~vwd~~~~~~~~~~~~~----  135 (432)
                      ..+.|.+|++....  ....+....+ ...+++.++|.++++...          .+.|..+|. .++.+..+...    
T Consensus       205 ~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~  282 (322)
T 2fp8_A          205 LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA  282 (322)
T ss_dssp             GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT
T ss_pred             CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc
Confidence            56899999987421  1222222233 788999999987766544          467888887 47777766532    


Q ss_pred             -CceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319         136 -AATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus       136 -~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                       ..+.++++ .++.++++....+.|..+
T Consensus       283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          283 GEHFEQIQE-HDGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             TSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred             cccceEEEE-eCCEEEEeecCCCceEEE
Confidence             34666666 466666655566673333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.22  E-value=0.018  Score=59.93  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             EEEEeecCcceeeEEEccCC----------cCEEEEEEc-CCC---CEEEEEeCCCeEEEEeCCCCeeEEEEeeCC----
Q psy9319          33 DFKFKEHHKLEEQNILKAHP----------VTCICIEFD-PTG---KYFAVGSKDALVSLWDAAELTCIRTFQRLD----   94 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~----------~~V~~l~~s-pdg---~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~----   94 (432)
                      .+..+|..+|+....++...          .++. +... .+|   ..++.++.+|.+.++|..+|+.+.......    
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  357 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence            56777888998887766422          2222 2222 567   567888999999999999998876554110    


Q ss_pred             ---------CCE--------------------------EEEEEeeCCCEEEEEe--------------------------
Q psy9319          95 ---------WPV--------------------------RAISFSHDGALIASGS--------------------------  113 (432)
Q Consensus        95 ---------~~V--------------------------~~i~~spdg~~l~sgs--------------------------  113 (432)
                               .++                          ..++++|+..++++..                          
T Consensus       358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (599)
T 1w6s_A          358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (599)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence                     111                          1356677655554421                          


Q ss_pred             -------------CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         114 -------------EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       114 -------------~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                                   .+|.|..||+.+|+.+.......++..-.....+.+++.++.|+.++.||.
T Consensus       438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~  501 (599)
T 1w6s_A          438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDS  501 (599)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEEC
Confidence                         347899999999999888865444332223335677777999999444444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.16  E-value=0.06  Score=50.93  Aligned_cols=111  Identities=12%  Similarity=-0.044  Sum_probs=71.5

Q ss_pred             cCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-C-CeEEEEeCCCCcEE
Q psy9319          53 VTCICIEFDPTG-KYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE-D-LTIDIAHVESGKKV  129 (432)
Q Consensus        53 ~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-d-g~V~vwd~~~~~~~  129 (432)
                      .....+++++.+ .++++-...+.|.++++........+.........++++|.+..|+.+.. . +.|...++... ..
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~  155 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DI  155 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-Ce
Confidence            345788998755 44455566789999998754433333334456889999997666655553 3 68888888543 33


Q ss_pred             EEEe--cCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         130 YDIC--IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       130 ~~~~--~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      ..+.  .-.....++|+|++..|+.+. ..+.|..+|+
T Consensus       156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            3332  234577899998776666554 4456555554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.10  E-value=0.039  Score=53.15  Aligned_cols=112  Identities=7%  Similarity=-0.102  Sum_probs=71.1

Q ss_pred             cCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CC-CeEEEEeCCCCcEE
Q psy9319          53 VTCICIEFDPTG-KYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-ED-LTIDIAHVESGKKV  129 (432)
Q Consensus        53 ~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~d-g~V~vwd~~~~~~~  129 (432)
                      .....+++++.+ .++++-...+.|.+.++........+...-.....++++|.+..|+... .. +.|...++......
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  195 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR  195 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE
Confidence            345678898854 4455556678999999875443333333445688999999666555544 44 78999988654333


Q ss_pred             EEEe-cCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         130 YDIC-IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       130 ~~~~-~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      ..+. .-.....++|+|++..|+.+. ..+.|..+|+
T Consensus       196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            2222 234467899998776666554 4556555543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.09  E-value=0.015  Score=62.30  Aligned_cols=148  Identities=12%  Similarity=0.017  Sum_probs=85.1

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEEc-cCCcCEEEEEEcCCCCEEEEEeC---CCeEEEEeC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILK-AHPVTCICIEFDPTGKYFAVGSK---DALVSLWDA   81 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~-~h~~~V~~l~~spdg~~L~sgs~---dg~I~iwd~   81 (432)
                      ..+.|+|++..++.+ +.|.......|.++++.++..  ...+. .+......+.|||||++|+..+.   ...|.++|+
T Consensus       224 ~~~~WspDg~~l~y~-~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~  302 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYV-TKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL  302 (751)
T ss_dssp             SCCEECSSTTEEEEE-EECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred             eeEEEecCCCEEEEE-EECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            467899999877444 445444445677777766542  23333 23345678899999998876653   346888998


Q ss_pred             CCCe-eE--EEEe-eCCCCEEEEEEeeCCCEEEEEe-CC----CeEEEEeCCCC-cEEE-EEecCCc--eEEEEEccCCc
Q psy9319          82 AELT-CI--RTFQ-RLDWPVRAISFSHDGALIASGS-ED----LTIDIAHVESG-KKVY-DICIQAA--TFTVAWHPKQY  148 (432)
Q Consensus        82 ~~~~-~~--~~~~-~h~~~V~~i~~spdg~~l~sgs-~d----g~V~vwd~~~~-~~~~-~~~~~~~--V~~l~fspdg~  148 (432)
                      .++. ..  ..+. ...+...++.|+. |..|+..+ .+    ..|..+|+.++ .... .+.+...  +..+.+. .+.
T Consensus       303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~  380 (751)
T 2xe4_A          303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNY  380 (751)
T ss_dssp             SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSE
T ss_pred             CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCE
Confidence            8652 12  3333 3344555665543 55554443 33    36788888653 2222 3444333  4445554 234


Q ss_pred             EEEEEECCCe
Q psy9319         149 LLAYACDDKY  158 (432)
Q Consensus       149 ~l~s~s~d~~  158 (432)
                      ++++...++.
T Consensus       381 lv~~~~~~g~  390 (751)
T 2xe4_A          381 LVVAGRRAGL  390 (751)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEeCCE
Confidence            5555666665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.07  E-value=0.046  Score=53.40  Aligned_cols=131  Identities=6%  Similarity=-0.097  Sum_probs=77.9

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTG-KYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      |..++.........+.........+++++.+ .++++-...+.|.+.++........+...-.....+++.|.+..|+.+
T Consensus       140 I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~t  219 (386)
T 3v65_B          140 ILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT  219 (386)
T ss_dssp             EEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEe
Confidence            4444444333223333323344678888754 444555667789999987544333344344568999999976666655


Q ss_pred             e-CC-CeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         113 S-ED-LTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       113 s-~d-g~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      . .. +.|...++.......... .......++|+|++..|+.+. ..+.|..+|+
T Consensus       220 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          220 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             ccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            4 44 789999886544333332 334478899998766666554 4556444443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.03  E-value=0.047  Score=51.17  Aligned_cols=120  Identities=10%  Similarity=0.016  Sum_probs=76.4

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC--CeEEE
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED--LTIDI  120 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d--g~V~v  120 (432)
                      +.+..+... .....++|+|+|.++++....+.|..||.... ....+ .....+.+++++|+|+++++....  ..|..
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            444455433 45678999999997777778899999998753 33333 234578899999999966655433  24777


Q ss_pred             EeCCCCcEEEEEec--CCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         121 AHVESGKKVYDICI--QAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       121 wd~~~~~~~~~~~~--~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      +|..+++.......  ......++..+++..+++...++.|.++|..
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~  146 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  146 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence            78778775433322  2223445555555555554457776666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.01  E-value=0.015  Score=58.08  Aligned_cols=150  Identities=13%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             CcccccccCCC---CcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC---C-eEE
Q psy9319           5 NFIPLLGLNPR---PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD---A-LVS   77 (432)
Q Consensus         5 n~I~~l~~~p~---~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d---g-~I~   77 (432)
                      +.-..++++|+   +.++++.. .      ..|+.++..++... .+-+......+++|+++|.++++....   . .+.
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~-~------~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~  210 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQ-R------DAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIY  210 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECB-T------SCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeC-C------CCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEE
Confidence            34467788884   55543221 1      34556666555544 333444568899999999944444311   1 233


Q ss_pred             EEeCCCCee-EEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEE-e--cCCceEEEEEccCCcEEEE
Q psy9319          78 LWDAAELTC-IRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDI-C--IQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        78 iwd~~~~~~-~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~-~--~~~~V~~l~fspdg~~l~s  152 (432)
                      .++...+.. ...+. .......++++| +|.++++-..++.|+.+|..++.....+ .  .......++|+|+|..|+.
T Consensus       211 ~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          211 LFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             EECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred             EEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence            333322111 11222 234456788999 6766656567889999999878763333 2  2222346999999986655


Q ss_pred             EE-CCCeEEEEe
Q psy9319         153 AC-DDKYDRKQD  163 (432)
Q Consensus       153 ~s-~d~~I~vwd  163 (432)
                      +. ..+.|+.++
T Consensus       290 ad~~~~~I~~~~  301 (433)
T 4hw6_A          290 IYNGKHCIYRVD  301 (433)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EeCCCCEEEEEe
Confidence            54 456644433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.01  E-value=0.12  Score=50.79  Aligned_cols=117  Identities=10%  Similarity=-0.096  Sum_probs=76.9

Q ss_pred             EccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCC
Q psy9319          48 LKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE--DLTIDIAHVE  124 (432)
Q Consensus        48 l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~  124 (432)
                      +.........+++.+ .+.++++-...+.|.+.++........+.........+++.|.+..|+....  .+.|...++.
T Consensus       154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            333445677899998 4555556566789999999865544444434456899999997666665552  3789999986


Q ss_pred             CCcEEEEEe-cCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         125 SGKKVYDIC-IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       125 ~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      .......+. .-.....|+++|++..|+.+. ..+.|..+|+
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  275 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeC
Confidence            544433333 235678899998777776664 4456554444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.84  E-value=0.15  Score=49.65  Aligned_cols=124  Identities=7%  Similarity=-0.077  Sum_probs=74.3

Q ss_pred             ccCCcCEEEEEEcCCCCEEEEE-eCC-CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCC
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVG-SKD-ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVES  125 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sg-s~d-g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~  125 (432)
                      .........++++|.+..|+.+ ... +.|..+++............-.....++|+|++..|+.+. ..+.|..+|+..
T Consensus       198 ~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          198 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            3334567899999966555444 344 6888888874433333333345678999998777666654 567899999875


Q ss_pred             CcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         126 GKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       126 ~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      ......+. .......+++ ..+.++++-...+.        |..++..+|..+..+
T Consensus       278 ~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~--------V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          278 SHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS--------INSANKFTGKNQEII  325 (386)
T ss_dssp             CSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE--------EEEEETTTCCSCEEE
T ss_pred             CeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe--------EEEEECCCCcceEEE
Confidence            44333332 2334567777 34455555555566        444554444444433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.81  E-value=0.058  Score=57.83  Aligned_cols=107  Identities=11%  Similarity=-0.006  Sum_probs=73.2

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe-----eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-----RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~-----~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                      ...|.+++..++|..|..|+.++-|.+||..++... .+.     .....|.++...++|.+++.. .+ -|.+||..++
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR  481 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC
Confidence            357899999888885667787778999999877643 332     124579999988888866554 34 4889998877


Q ss_pred             cEEEEEe-------cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319         127 KKVYDIC-------IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus       127 ~~~~~~~-------~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .......       ....|.++..+++|.+.+.+ ..| +..||
T Consensus       482 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~G-l~~~~  523 (795)
T 4a2l_A          482 SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EEG-LSVFK  523 (795)
T ss_dssp             EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SSC-EEEEE
T ss_pred             eEEEccccccccccCCceEEEEEECCCCCEEEEe-CCc-eEEEe
Confidence            5433221       12568899999988866644 444 34443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.80  E-value=0.052  Score=49.95  Aligned_cols=111  Identities=11%  Similarity=0.096  Sum_probs=79.3

Q ss_pred             EEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCeeEEEEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q psy9319          47 ILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLWDAAELTCIRTFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVE  124 (432)
Q Consensus        47 ~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~  124 (432)
                      .+.+-...+..++|+|++..|+ +...++.|...|+. +..+..+.- .......|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4566667899999999766554 56778889999998 777776642 23568889999988877766677889999876


Q ss_pred             CCcE---EEEEe-------cCCceEEEEEccCCcEEEEEECCCe
Q psy9319         125 SGKK---VYDIC-------IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       125 ~~~~---~~~~~-------~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ....   +....       .......++|+|.+..|+++.....
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p  143 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP  143 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence            5442   22221       2233689999999877777665544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.71  E-value=0.22  Score=47.76  Aligned_cols=107  Identities=9%  Similarity=-0.012  Sum_probs=65.9

Q ss_pred             cCCcCEEEEEEcCCCCEE-EEEeCC-CeEEEEeCCCCeeEEEE-eeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCC
Q psy9319          50 AHPVTCICIEFDPTGKYF-AVGSKD-ALVSLWDAAELTCIRTF-QRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVES  125 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L-~sgs~d-g~I~iwd~~~~~~~~~~-~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~  125 (432)
                      ........++++|.+..| ++-... +.|..+++.... ...+ ...-.....++|+|++..|+.+. ..+.|..+|+..
T Consensus       156 ~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            334557899999955544 444444 789889887433 3333 22344678999999777666665 567899999875


Q ss_pred             CcEEEEEe-cCCceEEEEEccCCcEEEEEECCCe
Q psy9319         126 GKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       126 ~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ......+. .......+++ ..+.++++-...+.
T Consensus       235 ~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~  267 (349)
T 3v64_C          235 SHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS  267 (349)
T ss_dssp             CSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE
T ss_pred             CceEEEEeCCCCCceEEEE-ECCEEEEecCCCCe
Confidence            44333332 2334566777 34455554445555

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.67  E-value=0.032  Score=53.73  Aligned_cols=99  Identities=10%  Similarity=0.084  Sum_probs=68.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEEeeC---------CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319          63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRL---------DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus        63 dg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h---------~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                      ++..++.++.++.|..+|..+|+.+-.+...         ...+.+ ....++..++.++.++.|..+|..+|+.+....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            3567888888999999999999887666532         122322 222356678888999999999999999988776


Q ss_pred             cCCceEE-EEEccCCcEEEEEECCCeEEEEeC
Q psy9319         134 IQAATFT-VAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       134 ~~~~V~~-l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ....+.+ ....  +..+++++.++.|..+|.
T Consensus       131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~  160 (376)
T 3q7m_A          131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNE  160 (376)
T ss_dssp             CSSCCCSCCEEE--TTEEEEECTTSEEEEEET
T ss_pred             CCCceEcCCEEE--CCEEEEEcCCCeEEEEEC
Confidence            4433322 2222  346777888888666665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.66  E-value=0.14  Score=47.77  Aligned_cols=149  Identities=11%  Similarity=0.007  Sum_probs=82.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC--CeEEEEeCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD--ALVSLWDAA   82 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d--g~I~iwd~~   82 (432)
                      .....++|+|++.++ ++...     ...|..++... .....+. ....+.+++++++|+++++....  ..|..+|..
T Consensus        32 ~~pegia~~~~g~ly-v~d~~-----~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           32 TFLENLASAPDGTIF-VTNHE-----VGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             CCEEEEEECTTSCEE-EEETT-----TTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCcceEEECCCCCEE-EEeCC-----CCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence            445677888888755 43222     22355556543 3333332 23467899999999976665433  247777877


Q ss_pred             CCeeEEEEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE-EEEEe----------cCCceEEEEEccCCcEE
Q psy9319          83 ELTCIRTFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK-VYDIC----------IQAATFTVAWHPKQYLL  150 (432)
Q Consensus        83 ~~~~~~~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~-~~~~~----------~~~~V~~l~fspdg~~l  150 (432)
                      ++........ .......++..+++..+++.+.++.|+++|..++.. +....          .......+  +|++..|
T Consensus       104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l  181 (306)
T 2p4o_A          104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL  181 (306)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred             CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence            7765332221 223345555555555455544688999999876532 22111          11123445  7888766


Q ss_pred             EEEE-CCCeEEEEe
Q psy9319         151 AYAC-DDKYDRKQD  163 (432)
Q Consensus       151 ~s~s-~d~~I~vwd  163 (432)
                      +.+. ..+.|..||
T Consensus       182 yv~d~~~~~I~~~~  195 (306)
T 2p4o_A          182 YVSNTEKMLLLRIP  195 (306)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEeCCCCEEEEEE
Confidence            5554 455644443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.57  E-value=0.16  Score=54.37  Aligned_cols=111  Identities=13%  Similarity=0.088  Sum_probs=76.6

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEee--------CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR--------LDWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                      ...|.++...++|.+ ..|+.++-|..||..++........        ....|.++...++|..|..|+.++-|.++|.
T Consensus       356 ~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            356999999888874 4577777799999887654332211        1357999998888885666777777999999


Q ss_pred             CCCcEEEEEe-----cCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         124 ESGKKVYDIC-----IQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       124 ~~~~~~~~~~-----~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      .++.......     ....|.++..+++|.+.+.+ .+| +.+||..
T Consensus       435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~  479 (795)
T 4a2l_A          435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPE  479 (795)
T ss_dssp             TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETT
T ss_pred             CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCC
Confidence            8876543321     23468999998888866544 444 5666653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.49  E-value=0.58  Score=43.99  Aligned_cols=110  Identities=11%  Similarity=-0.054  Sum_probs=67.4

Q ss_pred             CCcCEEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCeeEEEE-eeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCC
Q psy9319          51 HPVTCICIEFDPTGKYFAVGSK-D-ALVSLWDAAELTCIRTF-QRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESG  126 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sgs~-d-g~I~iwd~~~~~~~~~~-~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~  126 (432)
                      .......++++|.+..|+.+.. . +.|..+++.. .....+ ...-.....++|+|++..|+.+. ..+.|..+|+...
T Consensus       118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            3456789999996655544443 3 6888888863 333333 22345688999999877776665 5678999998754


Q ss_pred             cEEEEEec---CCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319         127 KKVYDICI---QAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus       127 ~~~~~~~~---~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      ........   ......+++. .+.++++-...+.|..+
T Consensus       197 ~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          197 NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence            33222221   2345677774 35555555555663333

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.47  E-value=0.046  Score=54.40  Aligned_cols=118  Identities=11%  Similarity=-0.039  Sum_probs=68.8

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee-eEEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE-QNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~-~~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~   81 (432)
                      .+....++++|++.++ ++...........+.+ +...+.. ...+. .......++++| +|.++++-..++.|+.+|.
T Consensus       181 ~~~P~giavd~dG~ly-Vad~~~~~~~~gv~~~-~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMV-VVDDQSSDTNTGIYLF-TRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             CSCEEEEEECTTCCEE-EEECCSCTTSEEEEEE-CGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred             CCCccEEEECCCCCEE-EEcCCCCcccceEEEE-ECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence            3456778899998844 5433222222222222 2111111 11222 123345688999 7776666667789999999


Q ss_pred             CCCeeEEEEee--CCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCC
Q psy9319          82 AELTCIRTFQR--LDWPVRAISFSHDGALIASGS-EDLTIDIAHVE  124 (432)
Q Consensus        82 ~~~~~~~~~~~--h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~  124 (432)
                      .++.....+..  .......++|+|++.+|+.+. ..+.|..+++.
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            87765333322  122345799999999665554 57889998865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.43  E-value=0.1  Score=52.74  Aligned_cols=148  Identities=12%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             cccccCCC-CcceeeeeeecCCCceeEEEEeecCcceeeEEEccC---CcCEEEEEE-------cCCCCEEEEEeCCC--
Q psy9319           8 PLLGLNPR-PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH---PVTCICIEF-------DPTGKYFAVGSKDA--   74 (432)
Q Consensus         8 ~~l~~~p~-~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h---~~~V~~l~~-------spdg~~L~sgs~dg--   74 (432)
                      ..++++|. +..++++. ..    ...+++.|..++.....+...   ......++|       +++|..|+++...+  
T Consensus       142 ~~la~dp~~~~~Lyv~~-~~----~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICY-DG----HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEETTEEEEEEEEE-ET----EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CEEEEccCCCCEEEEEE-CC----CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            56778883 44343332 11    234666666665554444332   234789999       99999666665543  


Q ss_pred             -----eEEEEeCCC-CeeE-----EEEeeCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEeCC-------CCcE-------
Q psy9319          75 -----LVSLWDAAE-LTCI-----RTFQRLDWPVRAISFSHD-GALIASGSEDLTIDIAHVE-------SGKK-------  128 (432)
Q Consensus        75 -----~I~iwd~~~-~~~~-----~~~~~h~~~V~~i~~spd-g~~l~sgs~dg~V~vwd~~-------~~~~-------  128 (432)
                           .|.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..       
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence                 366675443 2211     222221 23456788994 5555555678899999987       5543       


Q ss_pred             -------EEEEecCCceEEEEEccCCcEEEEEE-CCCeEEE
Q psy9319         129 -------VYDICIQAATFTVAWHPKQYLLAYAC-DDKYDRK  161 (432)
Q Consensus       129 -------~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~v  161 (432)
                             +.........+.++|+|+|.+|+.+. ..+.|+.
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence                   22222334567899999999655554 4556444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.43  E-value=0.12  Score=49.76  Aligned_cols=128  Identities=14%  Similarity=0.080  Sum_probs=87.3

Q ss_pred             eEEEEeecCcceeeEEEccCCcCEEEEEEcCC----CCE--E--EEEeC--CCeEEEEeC--CCCeeEEEEee------C
Q psy9319          32 LDFKFKEHHKLEEQNILKAHPVTCICIEFDPT----GKY--F--AVGSK--DALVSLWDA--AELTCIRTFQR------L   93 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd----g~~--L--~sgs~--dg~I~iwd~--~~~~~~~~~~~------h   93 (432)
                      .-+.++|. +|+.++.+..  +.+..+..-|+    |..  +  ++.-.  +++|++|++  .++. +..+..      .
T Consensus        50 ~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t  125 (355)
T 3amr_A           50 SGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIAT  125 (355)
T ss_dssp             TEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEEC
T ss_pred             CCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCC
Confidence            46788898 8888888865  55666666652    322  2  33333  578999966  3433 333311      1


Q ss_pred             C-CCEEEEEE--eeC-CC-EEEEEeCCCeEEEEeCC-------CCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEE
Q psy9319          94 D-WPVRAISF--SHD-GA-LIASGSEDLTIDIAHVE-------SGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK  161 (432)
Q Consensus        94 ~-~~V~~i~~--spd-g~-~l~sgs~dg~V~vwd~~-------~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~v  161 (432)
                      . ..+..+++  +|. +. +++....+|.+..|++.       +++.+..+...+.+..|..++....|+.+-.+..|..
T Consensus       126 ~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          126 AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred             CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEE
Confidence            2 45667777  674 44 57777788999999883       3355777778889999999998889999999876544


Q ss_pred             Ee
Q psy9319         162 QD  163 (432)
Q Consensus       162 wd  163 (432)
                      +|
T Consensus       206 ~d  207 (355)
T 3amr_A          206 FS  207 (355)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.34  E-value=0.76  Score=44.88  Aligned_cols=122  Identities=10%  Similarity=-0.068  Sum_probs=73.1

Q ss_pred             CCcCEEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCc
Q psy9319          51 HPVTCICIEFDPTGKYFAVGS-K-DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGK  127 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sgs-~-dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~  127 (432)
                      .......++++|.+..|+... . .+.|...++........+...-.....++++|++..|+.+. ..+.|..+|+....
T Consensus       200 ~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          200 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            344578999999665555443 2 36899999875433333333345788999999877777765 56789999986554


Q ss_pred             EEEEEec---CCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         128 KVYDICI---QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       128 ~~~~~~~---~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      ....+..   ......+++. .+.++++-...+.        |..++..+|..+..+
T Consensus       280 ~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~--------V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          280 RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA--------IFSANRLTGSDVNLL  327 (400)
T ss_dssp             CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS--------EEEEESSSCCCCEEE
T ss_pred             cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe--------EEEEEcCCCCceEEE
Confidence            3333321   2335566663 3344444444455        555554455444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.31  E-value=0.027  Score=58.24  Aligned_cols=80  Identities=10%  Similarity=0.079  Sum_probs=56.2

Q ss_pred             CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceE--EEEEccCCcEE
Q psy9319          73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATF--TVAWHPKQYLL  150 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~--~l~fspdg~~l  150 (432)
                      ++.|..||+.+++.+-.+... ..+.+..+...+..++.++.|+.|.+||..+|+.+..+.....+.  -+.+..+|..+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~y  521 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEE
Confidence            478999999999887776532 233333344456778889999999999999999999887444332  24455777655


Q ss_pred             EEE
Q psy9319         151 AYA  153 (432)
Q Consensus       151 ~s~  153 (432)
                      +..
T Consensus       522 v~~  524 (571)
T 2ad6_A          522 IGS  524 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.27  E-value=0.43  Score=51.14  Aligned_cols=114  Identities=11%  Similarity=-0.103  Sum_probs=74.4

Q ss_pred             CCcCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CC-CeEEEEeCCCCc
Q psy9319          51 HPVTCICIEFDPTGKY-FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-ED-LTIDIAHVESGK  127 (432)
Q Consensus        51 h~~~V~~l~~spdg~~-L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~d-g~V~vwd~~~~~  127 (432)
                      .......|++.+.+.. +++-...+.|.+.++........+.........|++.|.+..|+.+. .. +.|.+.++....
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            3455668999987654 45556678999999985544333333445689999999766666655 33 689999986554


Q ss_pred             EEEEEe-cCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         128 KVYDIC-IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       128 ~~~~~~-~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      ....+. .-.....|++++.+..|+.+. ..+.|..+++
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            433333 335678899998776666664 3455444443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.23  E-value=0.83  Score=43.11  Aligned_cols=122  Identities=5%  Similarity=-0.039  Sum_probs=72.5

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCC
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGS--KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESG  126 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~  126 (432)
                      ........++++|.+..|+.+.  ..+.|...++........+...-.....++|+|++..|+.+. ..+.|..+|+...
T Consensus       119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            3445578999999655555544  357888888874332222223334678999999777776665 5688999998654


Q ss_pred             cEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeee
Q psy9319         127 KKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKR  180 (432)
Q Consensus       127 ~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~  180 (432)
                      ....... .......+++.. +.++++-...+.        |..++..+|.....
T Consensus       199 ~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~--------V~~~~~~~G~~~~~  244 (318)
T 3sov_A          199 NRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS--------ILACNKYTGEGLRE  244 (318)
T ss_dssp             SCEEEECSCCSCEEEEEEET-TEEEEEETTTTE--------EEEEETTTCCSCEE
T ss_pred             ceEEEecCCCCCceEEEEeC-CEEEEEecCCCe--------EEEEECCCCCceEE
Confidence            3322222 234456677653 344444445556        55555555544333

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.22  E-value=0.15  Score=48.40  Aligned_cols=111  Identities=12%  Similarity=-0.035  Sum_probs=71.0

Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCCCCcEEE
Q psy9319          54 TCICIEFDPT-GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE--DLTIDIAHVESGKKVY  130 (432)
Q Consensus        54 ~V~~l~~spd-g~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~~~~~~~  130 (432)
                      ....+++.+. +.++++-...+.|.++++........+.........+++.|.+..|+.+..  .+.|...++.......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            4457888874 455555566789999998754333333344456889999997666666552  5789888886443322


Q ss_pred             EEe-cCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         131 DIC-IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       131 ~~~-~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      ... .-.....++|+|++..|+.+. ..+.|..+|+
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            222 234467899999766666554 4566555554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.19  E-value=0.16  Score=50.26  Aligned_cols=118  Identities=10%  Similarity=0.004  Sum_probs=71.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee--EEEccCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ--NILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~--~~l~~h~~~V~~l~~sp-dg~~L~sgs~dg~I~iwd~   81 (432)
                      +....+++++++..++++......+....+.+ + ..+...  ..+.. ......++++| +|.++++-...+.|..++.
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~-~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYIL-T-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEE-E-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEE-e-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            34467888898885546544333333322222 2 222221  23322 22345788999 7777777667889999999


Q ss_pred             CCCeeEEEEee-CCCCEEEEEEeeCCCEEEEE-eCCCeEEEEeCCC
Q psy9319          82 AELTCIRTFQR-LDWPVRAISFSHDGALIASG-SEDLTIDIAHVES  125 (432)
Q Consensus        82 ~~~~~~~~~~~-h~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~~  125 (432)
                      .++.....+.. .....+.++|+|+|++|+.+ ...+.|..++...
T Consensus       256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            87654222221 22457889999999965555 4678899987653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.17  E-value=0.29  Score=47.28  Aligned_cols=155  Identities=10%  Similarity=-0.078  Sum_probs=85.2

Q ss_pred             cccccCCCCcceeeeeeecCCC------ceeEEEEeecCc--cee-eEEEcc-----CCcCEEEEEEcC--CCC--EEEE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISP------KQLDFKFKEHHK--LEE-QNILKA-----HPVTCICIEFDP--TGK--YFAV   69 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~------~~~~i~~~d~~~--~~~-~~~l~~-----h~~~V~~l~~sp--dg~--~L~s   69 (432)
                      .++.+.|++..+++++.+....      ..+.|.++|..+  ++. ...+.+     .......+.+.+  +|.  ++++
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            5566778776654433333211      244566677652  221 112333     123556666655  454  4444


Q ss_pred             EeC--CCeEEEEeCCCC--ee--EEEEeeC-CCCEEEEEEeeCCCEEEEEeC-----------------CCeEEEEeCCC
Q psy9319          70 GSK--DALVSLWDAAEL--TC--IRTFQRL-DWPVRAISFSHDGALIASGSE-----------------DLTIDIAHVES  125 (432)
Q Consensus        70 gs~--dg~I~iwd~~~~--~~--~~~~~~h-~~~V~~i~~spdg~~l~sgs~-----------------dg~V~vwd~~~  125 (432)
                      ...  +.+|.+|++...  ..  +..+.+. -...+.+.+.++|.++++...                 .|.|..+|.  
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--  210 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  210 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence            443  467888776543  22  2233322 245889999999987777541                 245666665  


Q ss_pred             CcEEEEEecCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         126 GKKVYDICIQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       126 ~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      ++.......-...+.++|+||++.|+.+. ..+.|..|++
T Consensus       211 ~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence            33333333445578899999998877765 4566555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.16  E-value=0.059  Score=56.78  Aligned_cols=133  Identities=12%  Similarity=0.049  Sum_probs=83.3

Q ss_pred             eEEEEeecCcceeeEEEccCCc-CEEEEEEcC--CCCEEEEEeC------CCeEEEEeCCCCeeEEEEeeCC--------
Q psy9319          32 LDFKFKEHHKLEEQNILKAHPV-TCICIEFDP--TGKYFAVGSK------DALVSLWDAAELTCIRTFQRLD--------   94 (432)
Q Consensus        32 ~~i~~~d~~~~~~~~~l~~h~~-~V~~l~~sp--dg~~L~sgs~------dg~I~iwd~~~~~~~~~~~~h~--------   94 (432)
                      ..+..+|..+|+.+..+..... ....+..+|  .+..++.++.      ++.|..+|..+|+.+-.+....        
T Consensus       127 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~  206 (668)
T 1kv9_A          127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYE  206 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred             CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccc
Confidence            3566678888888777654210 000111122  1334555433      5899999999999887775210        


Q ss_pred             -----------------------CCEEEEEEeeCCCEEEEEeCCC-------------------eEEEEeCCCCcEEEEE
Q psy9319          95 -----------------------WPVRAISFSHDGALIASGSEDL-------------------TIDIAHVESGKKVYDI  132 (432)
Q Consensus        95 -----------------------~~V~~i~~spdg~~l~sgs~dg-------------------~V~vwd~~~~~~~~~~  132 (432)
                                             .....++++|+...++.++.++                   .|..+|..+|+.+..+
T Consensus       207 ~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~  286 (668)
T 1kv9_A          207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY  286 (668)
T ss_dssp             SHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             ccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe
Confidence                                   0112467888888888888776                   4999999999999888


Q ss_pred             ecC----------CceEEEEEccCCc---EEEEEECCCeEEEEeC
Q psy9319         133 CIQ----------AATFTVAWHPKQY---LLAYACDDKYDRKQDC  164 (432)
Q Consensus       133 ~~~----------~~V~~l~fspdg~---~l~s~s~d~~I~vwd~  164 (432)
                      ...          .++....+..+|.   .++.++.+|.+.++|.
T Consensus       287 ~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~  331 (668)
T 1kv9_A          287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDR  331 (668)
T ss_dssp             ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred             ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEEC
Confidence            621          2232233334665   6888889999555544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.03  E-value=0.054  Score=56.10  Aligned_cols=79  Identities=14%  Similarity=0.210  Sum_probs=56.8

Q ss_pred             CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEE--EEEccCCcEE
Q psy9319          73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT--VAWHPKQYLL  150 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~--l~fspdg~~l  150 (432)
                      +|.|.-||+.+|+.+-..... .++..-.....+.+++.|+.|+.++.||..+|+.+..+.....+.+  +.|..+|+..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            578999999999887666533 2222222333567888899999999999999999999875555443  6677788644


Q ss_pred             EE
Q psy9319         151 AY  152 (432)
Q Consensus       151 ~s  152 (432)
                      ++
T Consensus       544 v~  545 (582)
T 1flg_A          544 LG  545 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.89  E-value=0.29  Score=52.18  Aligned_cols=108  Identities=13%  Similarity=0.038  Sum_probs=70.0

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeC-----CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL-----DWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                      ...|.++...++|.+.+ |+. +-|.+||..++.........     ...|.++...++|.+++....+| |..+|..++
T Consensus       449 ~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~  525 (781)
T 3v9f_A          449 LLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQ  525 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCC
T ss_pred             CCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCC
Confidence            46789998888886544 455 56889998876554332222     35799999988888665443344 778988766


Q ss_pred             cEEEEEe-----cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         127 KKVYDIC-----IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       127 ~~~~~~~-----~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ... .+.     ....|.++..+++|.+.++ +.+|.|..||.
T Consensus       526 ~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~  566 (781)
T 3v9f_A          526 LVR-KFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSA  566 (781)
T ss_dssp             EEE-EECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCT
T ss_pred             eEE-EccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECC
Confidence            433 332     2345889999888886554 44664244443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.82  E-value=0.66  Score=48.37  Aligned_cols=154  Identities=7%  Similarity=-0.086  Sum_probs=87.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYF-AVGSKDALVSLWDAAEL   84 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~~~   84 (432)
                      ....++|++....+..+-..+     ..|..++.........+.........+++++.+..| ++-...+.|.+.++...
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             ceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            345566666554443432211     233333433322223333333456688888765544 55556688999998754


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEE-CCCeEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSE--DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC-DDKYDRK  161 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~v  161 (432)
                      .....+...-.....+++.|....|+....  .+.|...++.................+++++++..|+.+. ..+.|..
T Consensus       113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            433333334456789999996556665552  5678888886554443344445577888888765555553 3455555


Q ss_pred             EeC
Q psy9319         162 QDC  164 (432)
Q Consensus       162 wd~  164 (432)
                      +|+
T Consensus       193 ~d~  195 (628)
T 4a0p_A          193 SNM  195 (628)
T ss_dssp             EET
T ss_pred             EcC
Confidence            554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.77  E-value=0.27  Score=52.48  Aligned_cols=108  Identities=10%  Similarity=0.026  Sum_probs=71.3

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEee---CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR---LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK  128 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~  128 (432)
                      ...|.++...++|.+.+ |+.++-|..+|..++... .+..   ....|.++...++|.+++ |+. +-|.++|..++..
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSC
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeE
Confidence            46789998888887554 666677889998776543 2321   345799998888876554 444 4588999887664


Q ss_pred             EEEEe-c-----CCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         129 VYDIC-I-----QAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       129 ~~~~~-~-----~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ..... .     ...|.++..+++|.+.+ |+.++-+..||.
T Consensus       482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~  522 (781)
T 3v9f_A          482 IHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTP  522 (781)
T ss_dssp             CEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECT
T ss_pred             EecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeC
Confidence            43322 1     35688999999888665 444333444544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.75  E-value=0.28  Score=48.34  Aligned_cols=103  Identities=10%  Similarity=0.053  Sum_probs=73.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------------eEEEEee------CCCCEEEEEEee---CCCEEEEE
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELT------------CIRTFQR------LDWPVRAISFSH---DGALIASG  112 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~------------~~~~~~~------h~~~V~~i~~sp---dg~~l~sg  112 (432)
                      .|..+..||+|.+||..+ +..|.|..+..+.            ....+.-      ...+|..+.|+|   .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            577899999999998876 5588888876221            1223331      246799999999   56789999


Q ss_pred             eCCCeEEEEeCCCCc--EEEEEe----------cCCceEEEEEccCCcEEEEEE--CCCe
Q psy9319         113 SEDLTIDIAHVESGK--KVYDIC----------IQAATFTVAWHPKQYLLAYAC--DDKY  158 (432)
Q Consensus       113 s~dg~V~vwd~~~~~--~~~~~~----------~~~~V~~l~fspdg~~l~s~s--~d~~  158 (432)
                      ..|++|++||+....  +. .+.          ....|.+++|.++|-.|+..+  .+|.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GD  204 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGD  204 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCC
Confidence            999999999997532  22 221          114588899998876666655  5666

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.71  E-value=0.28  Score=46.73  Aligned_cols=125  Identities=10%  Similarity=0.087  Sum_probs=83.2

Q ss_pred             EccCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCeeEEEEeeC-----C--CCEEEEEE---eeCCCEEEEEe---
Q psy9319          48 LKAHPVTCICIEFDPTGKYFAVG-SKDALVSLWDAAELTCIRTFQRL-----D--WPVRAISF---SHDGALIASGS---  113 (432)
Q Consensus        48 l~~h~~~V~~l~~spdg~~L~sg-s~dg~I~iwd~~~~~~~~~~~~h-----~--~~V~~i~~---spdg~~l~sgs---  113 (432)
                      +.+......+++|++....|+.+ -..++|..||...+........+     .  ..+..+.|   .|+++++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            34444455688998854455444 47899999999865443332222     1  13678999   68887777543   


Q ss_pred             ----------CCCeEEEEeCC---CCcEEEEEec-------------C-CceEEEEEccCCcEEEEEECC-CeEEEEeCC
Q psy9319         114 ----------EDLTIDIAHVE---SGKKVYDICI-------------Q-AATFTVAWHPKQYLLAYACDD-KYDRKQDCG  165 (432)
Q Consensus       114 ----------~dg~V~vwd~~---~~~~~~~~~~-------------~-~~V~~l~fspdg~~l~s~s~d-~~I~vwd~~  165 (432)
                                .+..|..+|+.   +++.+.....             . ..+..++.+++|+..++++.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      26789999999   7877666541             1 247789999999999998887 775555542


Q ss_pred             --ceEEeec
Q psy9319         166 --NLKVFGF  172 (432)
Q Consensus       166 --~i~vwd~  172 (432)
                        .+..|.+
T Consensus       168 G~~~~~~~~  176 (334)
T 2p9w_A          168 GKTVSTFAW  176 (334)
T ss_dssp             SCCEEEEEE
T ss_pred             CCEEeeeee
Confidence              2344543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.71  E-value=1.2  Score=42.73  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=79.5

Q ss_pred             cCEEEEEE--cCC-CC-EEEEEeCCCeEEEEeCC-------CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q psy9319          53 VTCICIEF--DPT-GK-YFAVGSKDALVSLWDAA-------ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIA  121 (432)
Q Consensus        53 ~~V~~l~~--spd-g~-~L~sgs~dg~I~iwd~~-------~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vw  121 (432)
                      ..+..+|+  +|. +. +++....+|.+..|++.       +++.+.+|. ..+.+..|...+....|+.+-.+.-|+.+
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~  206 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKF  206 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEEEecccceEEEE
Confidence            34455666  774 44 57778888999998873       234566665 44678899999988899999998778888


Q ss_pred             eCC-----CCcEEEEEe---cCCceEEEEE--ccCCc-EEEEEE-CCCeEEEEeCCceEEeecC-CCceeeee
Q psy9319         122 HVE-----SGKKVYDIC---IQAATFTVAW--HPKQY-LLAYAC-DDKYDRKQDCGNLKVFGFL-PEPIKKRK  181 (432)
Q Consensus       122 d~~-----~~~~~~~~~---~~~~V~~l~f--spdg~-~l~s~s-~d~~I~vwd~~~i~vwd~~-~~~~~~~~  181 (432)
                      |..     ++..+..+.   ....+..|++  .+++. +|++++ .+++        +.+||.. +...+..+
T Consensus       207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s--------~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS--------YAIYDRQGKNKYVADF  271 (355)
T ss_dssp             ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE--------EEEEESSTTCCEEEEE
T ss_pred             eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE--------EEEEECCCCCcEEEEE
Confidence            855     344555553   2246888887  45555 666666 4556        5555554 44444444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.46  E-value=2  Score=46.03  Aligned_cols=122  Identities=10%  Similarity=-0.063  Sum_probs=71.9

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCC
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGS-KD-ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESG  126 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs-~d-g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~  126 (432)
                      ........|+++|.+..|+.+. .. +.|.+.++........+...-.....|++++.+..|+.+. ..+.|...++...
T Consensus       511 ~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          511 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            3345578999999755555443 33 6899999875443333333345789999998777777665 4678999998655


Q ss_pred             cEEEEEec---CCceEEEEEccCCcEEEEEE-CCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         127 KKVYDICI---QAATFTVAWHPKQYLLAYAC-DDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       127 ~~~~~~~~---~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      .....+..   ......|++.  +..|+.+. ..+.        |...+..+|..+..+
T Consensus       591 ~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~--------I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          591 NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA--------IFSANRLTGSDVNLL  639 (791)
T ss_dssp             SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE--------EEEEETTTCCCCEEE
T ss_pred             ceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE--------EEEEeCCCCcceEEe
Confidence            44433332   1234456553  33444443 4444        444454455444443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.21  E-value=0.75  Score=43.42  Aligned_cols=105  Identities=6%  Similarity=0.073  Sum_probs=66.5

Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe-e---CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q psy9319          51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-R---LDWPVRAISFSHDGALIASGSEDLTIDIAHVESG  126 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~-~---h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~  126 (432)
                      ....+..+++++++..++ ++.+|.+.+.+.+.|..-..+. +   +...+.++.+.|++..++++. ++.| ++....|
T Consensus       203 ~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          203 TSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             SSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred             CCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence            456788899999887654 4567888777533233222221 1   223588999998877666654 6666 4556666


Q ss_pred             cEEEEEe----cCCceEEEEEccCCcEEEEEECCCeE
Q psy9319         127 KKVYDIC----IQAATFTVAWHPKQYLLAYACDDKYD  159 (432)
Q Consensus       127 ~~~~~~~----~~~~V~~l~fspdg~~l~s~s~d~~I  159 (432)
                      .....+.    ....+.++.|.+++. +++++.+|.|
T Consensus       280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i  315 (327)
T 2xbg_A          280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGIL  315 (327)
T ss_dssp             SSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEE
T ss_pred             cccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceE
Confidence            6555554    235688899986655 5556678873

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.06  E-value=0.26  Score=51.10  Aligned_cols=78  Identities=12%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceE--EEEEccCCcEE
Q psy9319          73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATF--TVAWHPKQYLL  150 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~--~l~fspdg~~l  150 (432)
                      +|.|.-||+.+|+.+-.... ..++..-.+...+.+++.++.|+.|+.||..+|+.+..+.....+.  -+.|..+|+..
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence            46788899999887766542 2222222233456788889999999999999999999887443322  25566677643


Q ss_pred             E
Q psy9319         151 A  151 (432)
Q Consensus       151 ~  151 (432)
                      +
T Consensus       531 v  531 (599)
T 1w6s_A          531 V  531 (599)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.06  E-value=0.032  Score=59.18  Aligned_cols=110  Identities=11%  Similarity=-0.074  Sum_probs=64.6

Q ss_pred             EEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CC-CeEEEEeCCCCcEEEE
Q psy9319          55 CICIEFDPT-GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-ED-LTIDIAHVESGKKVYD  131 (432)
Q Consensus        55 V~~l~~spd-g~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~d-g~V~vwd~~~~~~~~~  131 (432)
                      ...+++.+. +.++++-...+.|.++++........+.........++++|.+.+|+.+. .. +.|.++++........
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            456788764 45555555678899999875443333332234567889999665555444 22 6788887754332222


Q ss_pred             Ee-cCCceEEEEEccCCcEEEEE-ECCCeEEEEeC
Q psy9319         132 IC-IQAATFTVAWHPKQYLLAYA-CDDKYDRKQDC  164 (432)
Q Consensus       132 ~~-~~~~V~~l~fspdg~~l~s~-s~d~~I~vwd~  164 (432)
                      +. .......|+|+|++..|+.+ +..+.|..+|+
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence            22 22345679999876555544 45566555444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.04  E-value=0.091  Score=55.06  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=69.5

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCee--EEEEee-CCCCEEEEEEeeCCCEEEEEe-CCCeEEE
Q psy9319          57 CIEFDP-TGKYFAVGSKDA-----------LVSLWDAAELTC--IRTFQR-LDWPVRAISFSHDGALIASGS-EDLTIDI  120 (432)
Q Consensus        57 ~l~~sp-dg~~L~sgs~dg-----------~I~iwd~~~~~~--~~~~~~-h~~~V~~i~~spdg~~l~sgs-~dg~V~v  120 (432)
                      +.++.| +|.+++.|+.+.           .+.+||+.++..  +..+.. +.....++++.+++.+++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 888888887543           588999887653  223322 333344577788999999988 4568999


Q ss_pred             EeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEE-CC-----CeEEEEeCC
Q psy9319         121 AHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYAC-DD-----KYDRKQDCG  165 (432)
Q Consensus       121 wd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s-~d-----~~I~vwd~~  165 (432)
                      ||..++.-...-.  ....-.+++..++|++++.|+ .+     ..+.+||..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            9998764332211  122223456667899999988 34     334555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.02  E-value=0.065  Score=56.78  Aligned_cols=120  Identities=11%  Similarity=-0.067  Sum_probs=65.7

Q ss_pred             cCEEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEeCCCCcEE
Q psy9319          53 VTCICIEFDPTGKYFAVGS-KD-ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG-SEDLTIDIAHVESGKKV  129 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs-~d-g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~~~~~~  129 (432)
                      .....++++|.+..|+.+. .. +.|.++++........+...-...+.|+|+|++..|+.+ +..+.|.++|+......
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~  575 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  575 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence            3456788998654444333 22 678888776332222222223456789999976655554 46678999998654333


Q ss_pred             EEEec---CCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         130 YDICI---QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       130 ~~~~~---~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      ..+..   ......|++..+ .++++....+.        |..++..+|..+..+
T Consensus       576 ~~~~~~~~~~~P~glavd~~-~lywtd~~~~~--------V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          576 TILEDEKRLAHPFSLAVFED-KVFWTDIINEA--------IFSANRLTGSDVNLL  621 (699)
T ss_dssp             EECCCSSSCSSCCCCEEETT-EEEEECSTTTC--------EEEEETTTEEEEECC
T ss_pred             EEEecCCcCCCceEeEEECC-EEEEEeCCCCe--------EEEEEccCCCceEEe
Confidence            32221   122344555443 34444444455        555555555555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.01  E-value=0.079  Score=55.54  Aligned_cols=148  Identities=6%  Similarity=-0.043  Sum_probs=79.0

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc-----CCcCEEEEEEcCCCCEEEEEeCC---------
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA-----HPVTCICIEFDPTGKYFAVGSKD---------   73 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~-----h~~~V~~l~~spdg~~L~sgs~d---------   73 (432)
                      ..+.+.+++.++++.+..+.....-++.+||..+..-.. +..     ....-....+..++..++.|+.+         
T Consensus       290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~  368 (656)
T 1k3i_A          290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS  368 (656)
T ss_dssp             CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred             cceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCc
Confidence            344555778877666645544444567777776554221 110     00000001123445555555444         


Q ss_pred             CeEEEEeCCCCeeEEEEeeCC---------CCEEEEEEee-CCCEEEEEeCCC-----------eEEEEeCCCCcEEEEE
Q psy9319          74 ALVSLWDAAELTCIRTFQRLD---------WPVRAISFSH-DGALIASGSEDL-----------TIDIAHVESGKKVYDI  132 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~---------~~V~~i~~sp-dg~~l~sgs~dg-----------~V~vwd~~~~~~~~~~  132 (432)
                      ..+..||..+.........+.         ..-.++.|.. ++.+++.|+.++           .|.+||..+..-....
T Consensus       369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  448 (656)
T 1k3i_A          369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA  448 (656)
T ss_dssp             SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred             cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence            356788887665433332221         1234455544 677777777432           6788888777654432


Q ss_pred             --e--cCCceEEEEEccCCcEEEEEECC
Q psy9319         133 --C--IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       133 --~--~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                        .  ....-.+++..|+|.++++|+.+
T Consensus       449 ~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          449 SNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             TTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             cCCCCCCcccCCeEECCCCCEEEECCcc
Confidence              1  22222345667899999999864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.93  E-value=1.8  Score=44.88  Aligned_cols=154  Identities=14%  Similarity=0.022  Sum_probs=87.2

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcce-eeEEEccCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE-EQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~-~~~~l~~h~~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~   83 (432)
                      ....+++++.+..+..+   |.  ....|..++..... ....+.........+++++.+. ++++-...+.|.+.++..
T Consensus        41 ~~~~ld~~~~~~~ly~s---D~--~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWS---DV--SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             CEEEEEEETTTTEEEEE---ET--TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEEEeCCCEEEEE---EC--CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence            34556666655444333   11  11223333333222 1233443335678999999555 445556678999999985


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEE-CCCeE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSE--DLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYAC-DDKYD  159 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s-~d~~I  159 (432)
                      ......+...-.....|++.|.+..|+.+..  .+.|...++.......... .-.....+++++++..|+.+. ..+.|
T Consensus       116 ~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I  195 (619)
T 3s94_A          116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  195 (619)
T ss_dssp             CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence            4433333334456788999997666665553  4677777776443333332 334578899998766665554 44566


Q ss_pred             EEEeC
Q psy9319         160 RKQDC  164 (432)
Q Consensus       160 ~vwd~  164 (432)
                      ..+|+
T Consensus       196 ~~~~~  200 (619)
T 3s94_A          196 HKSNL  200 (619)
T ss_dssp             EEESS
T ss_pred             EEecC
Confidence            66554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.59  E-value=1  Score=44.38  Aligned_cols=104  Identities=15%  Similarity=0.130  Sum_probs=71.4

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeC----CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc---------
Q psy9319          61 DPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL----DWPVRAISFSHDGALIASGSEDLTIDIAHVESGK---------  127 (432)
Q Consensus        61 spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h----~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~---------  127 (432)
                      +.+|.-++.+- ++.||.-++......+.+...    -..|..+..||+|.+||..+ +..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            44666666554 567887777744445555432    22688899999999998875 4578888776221         


Q ss_pred             ---EEEEEe-------cCCceEEEEEccC---CcEEEEEECCCeEEEEeCCc
Q psy9319         128 ---KVYDIC-------IQAATFTVAWHPK---QYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       128 ---~~~~~~-------~~~~V~~l~fspd---g~~l~s~s~d~~I~vwd~~~  166 (432)
                         ....+.       ...+|..+.|||-   +..|++-..|+.|++||+..
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence               122332       2467999999995   46889899999988888754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.56  E-value=0.52  Score=42.24  Aligned_cols=139  Identities=13%  Similarity=0.024  Sum_probs=77.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee------eEEEc--cCCcCEEEEEEcCCCCEEEEEeCCCeE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE------QNILK--AHPVTCICIEFDPTGKYFAVGSKDALV   76 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~------~~~l~--~h~~~V~~l~~spdg~~L~sgs~dg~I   76 (432)
                      +.+.+++|+|++.++.+   .++     .+...+..+...      -..+-  +-.. ..++.|.|+|.+.++  .||.|
T Consensus        41 ~~~~~laf~P~G~LYaV---~~G-----~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~i  109 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV---LND-----KIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKL  109 (236)
T ss_dssp             TTCSEEEECTTSCEEEE---ETT-----EEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEE
T ss_pred             ccceeEEECCCccEEEE---eCC-----eEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEE
Confidence            45678999998887744   222     233333333111      11221  1112 468899999987777  56999


Q ss_pred             EEEeCCCCeeE------EEEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcE------EEEEe--cCCceEEE
Q psy9319          77 SLWDAAELTCI------RTFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKK------VYDIC--IQAATFTV  141 (432)
Q Consensus        77 ~iwd~~~~~~~------~~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~------~~~~~--~~~~V~~l  141 (432)
                      .-++..+....      ..+-. .=..+..+.+.|+|.+.+..  |+.+.-+...++..      ...+.  .......+
T Consensus       110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l  187 (236)
T 1tl2_A          110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL  187 (236)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred             EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence            88886431110      11111 11467999999999877666  77765444332221      11121  12224446


Q ss_pred             EEccCCcEEEEEECCCe
Q psy9319         142 AWHPKQYLLAYACDDKY  158 (432)
Q Consensus       142 ~fspdg~~l~s~s~d~~  158 (432)
                      .|+|+|.+.++.  ++.
T Consensus       188 ~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          188 FFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             EECTTSCEEEEE--TTE
T ss_pred             EECCCCcEEEEe--CCe
Confidence            788988877765  654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.47  E-value=1.1  Score=44.74  Aligned_cols=103  Identities=8%  Similarity=0.014  Sum_probs=63.4

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE--EEEee------CCCCEEEEEEeeC---CCEEEEEeC-------
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI--RTFQR------LDWPVRAISFSHD---GALIASGSE-------  114 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~--~~~~~------h~~~V~~i~~spd---g~~l~sgs~-------  114 (432)
                      ...+.++|.|+|+++++-...+.|.+++..++...  ..+..      ..+....|+|+|+   +..|+.+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999997777554457988887655432  22221      2456779999995   555554432       


Q ss_pred             ------CCeEEEEeCCCC--c-----EEE-EEe--cCCceEEEEEccCCcEEEEEEC
Q psy9319         115 ------DLTIDIAHVESG--K-----KVY-DIC--IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus       115 ------dg~V~vwd~~~~--~-----~~~-~~~--~~~~V~~l~fspdg~~l~s~s~  155 (432)
                            ...|.-+++..+  .     .+. .+.  ..+....|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235666665432  1     111 122  2234788999999987777554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.43  E-value=1  Score=43.23  Aligned_cols=108  Identities=15%  Similarity=0.100  Sum_probs=67.5

Q ss_pred             EccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE--EEE----eeCCCCEEEEEEeeC---CCEEEEE---eCC
Q psy9319          48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI--RTF----QRLDWPVRAISFSHD---GALIASG---SED  115 (432)
Q Consensus        48 l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~--~~~----~~h~~~V~~i~~spd---g~~l~sg---s~d  115 (432)
                      +-..-...+.++|.|+|.++++-...|.|++++...+...  ..+    .........|+++|+   +..|+..   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            3333455689999999998777666899999987655532  111    123467899999995   3444433   245


Q ss_pred             CeEEEEeCCCC----------cEEE-EEe--cCCceEEEEEccCCcEEEEEEC
Q psy9319         116 LTIDIAHVESG----------KKVY-DIC--IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus       116 g~V~vwd~~~~----------~~~~-~~~--~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      +.|.-|.+..+          +.+. .+.  .......|+|.|||.++++.+.
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence            56666766541          1111 122  1223456999999987777554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.43  E-value=0.81  Score=43.80  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=61.8

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--EEEEe---eCCCCEEEEEEeeC---CCEEEEEeC-C-----CeE
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC--IRTFQ---RLDWPVRAISFSHD---GALIASGSE-D-----LTI  118 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~--~~~~~---~h~~~V~~i~~spd---g~~l~sgs~-d-----g~V  118 (432)
                      .....++|.|+|+++++ ..++.|.+++  .+..  +..+.   ........++|+|+   +..|+.+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34679999999986555 5569999998  3432  11111   12356889999998   555554433 2     678


Q ss_pred             EEEeCCCCcE-----EE-EEec-C---CceEEEEEccCCcEEEEEE
Q psy9319         119 DIAHVESGKK-----VY-DICI-Q---AATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       119 ~vwd~~~~~~-----~~-~~~~-~---~~V~~l~fspdg~~l~s~s  154 (432)
                      ..++...+..     +. .+.. .   .....++|+|+|.++++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            8888765421     11 1221 1   1246799999997666544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.23  E-value=0.65  Score=44.59  Aligned_cols=101  Identities=9%  Similarity=0.045  Sum_probs=62.2

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eEEEEe---eCCCCEEEEEEeeC---CCEEEEEeC----C----C
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT-CIRTFQ---RLDWPVRAISFSHD---GALIASGSE----D----L  116 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~-~~~~~~---~h~~~V~~i~~spd---g~~l~sgs~----d----g  116 (432)
                      -.....++|.|+|+++++ ..++.|.++|. .+. .+..+.   ........|+|+|+   +..|+.+..    +    +
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345679999999985555 55699999974 454 222111   12356889999997   455554432    3    5


Q ss_pred             eEEEEeCCCC--c-----EE-EEEe--cCCceEEEEEccCCcEEEEEE
Q psy9319         117 TIDIAHVESG--K-----KV-YDIC--IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       117 ~V~vwd~~~~--~-----~~-~~~~--~~~~V~~l~fspdg~~l~s~s  154 (432)
                      .|..|+...+  .     .+ ..+.  .......++|.|||.++++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            6888887654  1     11 1122  112346799999998777644

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.21  E-value=1.8  Score=40.67  Aligned_cols=105  Identities=13%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q psy9319          50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDA--AELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK  127 (432)
Q Consensus        50 ~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~--~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~  127 (432)
                      ++...+.+++++|++.+++.+...+..+-+|-  .+...+  -......+..+.++|++..+ .++.+|.+.+.+...|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC
Confidence            44567889999999888776654433334453  233333  12345678899999988765 45567887776533344


Q ss_pred             EEEEEec-----CCceEEEEEccCCcEEEEEECCCe
Q psy9319         128 KVYDICI-----QAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       128 ~~~~~~~-----~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ....+..     ...+.++.+.|++.+++++. ++.
T Consensus       237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~  271 (327)
T 2xbg_A          237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA  271 (327)
T ss_dssp             EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC
T ss_pred             eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe
Confidence            3333321     23488899998887766554 554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.13  E-value=6.2  Score=40.83  Aligned_cols=117  Identities=9%  Similarity=-0.109  Sum_probs=71.1

Q ss_pred             EccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC--CCeEEEEeCC
Q psy9319          48 LKAHPVTCICIEFDPT-GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE--DLTIDIAHVE  124 (432)
Q Consensus        48 l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~--dg~V~vwd~~  124 (432)
                      +.........+++.+. +++.++-+..+.|.+.++........+...-....++++.|....|+.+..  .+.|...++.
T Consensus       387 ~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d  466 (619)
T 3s94_A          387 VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD  466 (619)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence            3333345678899874 445555566789999998754332223333456899999996555555442  3677777775


Q ss_pred             CCcEEEEEe-cCCceEEEEEccCCcEEEEEEC-CCeEEEEeC
Q psy9319         125 SGKKVYDIC-IQAATFTVAWHPKQYLLAYACD-DKYDRKQDC  164 (432)
Q Consensus       125 ~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~  164 (432)
                      ......... .-.....+++++++..|+.+.. .+.|..+++
T Consensus       467 G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          467 GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            443332222 3445778999987766666643 455444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.09  E-value=6.1  Score=40.97  Aligned_cols=111  Identities=10%  Similarity=0.046  Sum_probs=70.9

Q ss_pred             cCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCeeEEEEe-eCCCCEEEEEEee-CCCEEEEEeCCC--eEEEEeCCCCc
Q psy9319          53 VTCICIEFDPTGKYF-AVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSH-DGALIASGSEDL--TIDIAHVESGK  127 (432)
Q Consensus        53 ~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~i~~sp-dg~~l~sgs~dg--~V~vwd~~~~~  127 (432)
                      ..+..+++.+.+..| .+-+..+.|.+.++. |.....+. ......+++++.| .|.++.+-....  .|...++....
T Consensus       389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~  467 (628)
T 4a0p_A          389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE  467 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS
T ss_pred             CCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC
Confidence            457899999976655 466667889999987 44443443 3456789999999 555444433333  57777775443


Q ss_pred             EEEEEe-cCCceEEEEEccCCcEEEEEEC-CCeEEEEeC
Q psy9319         128 KVYDIC-IQAATFTVAWHPKQYLLAYACD-DKYDRKQDC  164 (432)
Q Consensus       128 ~~~~~~-~~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~  164 (432)
                      ...... .-.....+++++++..|+.+.. .+.|..+++
T Consensus       468 ~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~  506 (628)
T 4a0p_A          468 REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL  506 (628)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence            333333 3345688999998766766654 466544444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.84  E-value=3.3  Score=39.73  Aligned_cols=109  Identities=10%  Similarity=0.039  Sum_probs=71.2

Q ss_pred             eEEEccCC-cCEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCC
Q psy9319          45 QNILKAHP-VTCICIEFDPTGKYFAVGS-----------------KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG  106 (432)
Q Consensus        45 ~~~l~~h~-~~V~~l~~spdg~~L~sgs-----------------~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg  106 (432)
                      +..+.+.. ...+.+++.++|.+.++..                 ..|.|..+|.  +.+ ..+...-...+.++||||+
T Consensus       156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg  232 (355)
T 3sre_A          156 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDG  232 (355)
T ss_dssp             EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTS
T ss_pred             EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCC
Confidence            34444432 4578999999998777654                 1245655665  332 2333334567899999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCC-CcE--EEEEecCCceEEEEEcc-CCcEEEEEECC
Q psy9319         107 ALIASGS-EDLTIDIAHVES-GKK--VYDICIQAATFTVAWHP-KQYLLAYACDD  156 (432)
Q Consensus       107 ~~l~sgs-~dg~V~vwd~~~-~~~--~~~~~~~~~V~~l~fsp-dg~~l~s~s~d  156 (432)
                      +.|+.+. ..+.|+.|++.. +..  ...+...+..-.+++++ +|.+.+++..+
T Consensus       233 ~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          233 KYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence            9887765 578999999864 332  12333455567789999 59888767654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.78  E-value=1.4  Score=42.07  Aligned_cols=143  Identities=15%  Similarity=0.117  Sum_probs=75.2

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc---cCCcCEEEEEEcCC---CCEEEEE-eCC---
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK---AHPVTCICIEFDPT---GKYFAVG-SKD---   73 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~---~h~~~V~~l~~spd---g~~L~sg-s~d---   73 (432)
                      .+.-..++|.|++.++ ++.. +     ..|..++......+..+.   ........++|+|+   +..|+.+ +..   
T Consensus        30 l~~P~~ia~~pdG~l~-V~e~-~-----g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           30 LEVPWALAFLPDGGML-IAER-P-----GRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             CSCEEEEEECTTSCEE-EEET-T-----TEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred             CCCceEEEEcCCCeEE-EEeC-C-----CeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence            3445678899999866 4421 1     234444411112222221   22356789999998   4455444 322   


Q ss_pred             --CeEEEEeCCCCe-----eE-EEEee---CCCCEEEEEEeeCCCEEEEEeC-------------CCeEEEEeCCC----
Q psy9319          74 --ALVSLWDAAELT-----CI-RTFQR---LDWPVRAISFSHDGALIASGSE-------------DLTIDIAHVES----  125 (432)
Q Consensus        74 --g~I~iwd~~~~~-----~~-~~~~~---h~~~V~~i~~spdg~~l~sgs~-------------dg~V~vwd~~~----  125 (432)
                        +.|..|+...+.     .+ ..+..   .......++|.|||.+.++.+.             .|.|.-++...    
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence              578888876431     11 11221   0112358999999976555432             25666666643    


Q ss_pred             ----------CcEEEEEecCCceEEEEEcc-CCcEEEEEE
Q psy9319         126 ----------GKKVYDICIQAATFTVAWHP-KQYLLAYAC  154 (432)
Q Consensus       126 ----------~~~~~~~~~~~~V~~l~fsp-dg~~l~s~s  154 (432)
                                ...+....+ .....++|+| +|.++++-.
T Consensus       183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred             CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence                      111222222 2356789999 666555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.47  E-value=1.4  Score=42.21  Aligned_cols=141  Identities=9%  Similarity=0.003  Sum_probs=74.8

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce-eeEEEc---cCCcCEEEEEEcCC---CCEEEEEeC----
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE-EQNILK---AHPVTCICIEFDPT---GKYFAVGSK----   72 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~-~~~~l~---~h~~~V~~l~~spd---g~~L~sgs~----   72 (432)
                      .+.-..++|.|++.++ ++-. +     ..|.+++ .++. .+..+.   ........++|+|+   +..|+.+..    
T Consensus        28 l~~P~~ia~~pdG~l~-V~e~-~-----g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYL-VTER-P-----GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             CSCEEEEEEEETTEEE-EEET-T-----TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             CCCCeEEEEcCCCeEE-EEeC-C-----CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            3445678888998866 4421 1     3444444 3443 222221   22356789999997   444444332    


Q ss_pred             C----CeEEEEeCCCC--e---e--E-EEEeeC-CCCEEEEEEeeCCCEEEEEeC-------------CCeEEEEeCCCC
Q psy9319          73 D----ALVSLWDAAEL--T---C--I-RTFQRL-DWPVRAISFSHDGALIASGSE-------------DLTIDIAHVESG  126 (432)
Q Consensus        73 d----g~I~iwd~~~~--~---~--~-~~~~~h-~~~V~~i~~spdg~~l~sgs~-------------dg~V~vwd~~~~  126 (432)
                      +    ..|..|+....  .   .  + ..+... ......++|.|||.+.++.+.             .|.|..++....
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence            3    56777876643  1   1  1 112211 112457999999986665432             245666665432


Q ss_pred             ---------cEEEEEecCCceEEEEEcc-CCcEEEEE
Q psy9319         127 ---------KKVYDICIQAATFTVAWHP-KQYLLAYA  153 (432)
Q Consensus       127 ---------~~~~~~~~~~~V~~l~fsp-dg~~l~s~  153 (432)
                               ..+....+. ....++|+| +|.++++-
T Consensus       180 ~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence                     123333232 345799999 66655543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.02  E-value=3.2  Score=41.20  Aligned_cols=104  Identities=9%  Similarity=0.030  Sum_probs=55.0

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEEcc------CCcCEEEEEEcCC---CCEEEEEe-
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILKA------HPVTCICIEFDPT---GKYFAVGS-   71 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~~------h~~~V~~l~~spd---g~~L~sgs-   71 (432)
                      .+.-..++|.|++.++++. . .    ...|...+..++..  +..+..      ..+....++|+|+   +..|+.+. 
T Consensus        26 l~~P~~~a~~pdG~l~V~e-~-~----gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTE-R-A----TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEE-T-T----TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEE-c-C----CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            3445678899999877433 1 1    11344444333432  222221      2456789999995   44554433 


Q ss_pred             C------------CCeEEEEeCCCC--e-----eEE-EEee-CCCCEEEEEEeeCCCEEEEEe
Q psy9319          72 K------------DALVSLWDAAEL--T-----CIR-TFQR-LDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        72 ~------------dg~I~iwd~~~~--~-----~~~-~~~~-h~~~V~~i~~spdg~~l~sgs  113 (432)
                      .            ...|.-|+...+  .     .+. .+.. .......|+|.|||.+.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            2            235655654321  1     111 1211 112468899999998776654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.51  E-value=0.27  Score=44.04  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=63.5

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee------EEEEeeC-CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC------IRTFQRL-DWPVRAISFSHDGALIASGSEDLTIDIAHVES  125 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~------~~~~~~h-~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~  125 (432)
                      ..+.+++|+|+|.+.+.  .+|.+.-.+..+...      -..+-.+ -....++.|.|+|.+.++  .||.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            35679999999986555  677877777654211      1111100 012467889999987776  569998887643


Q ss_pred             CcEE------EEEe--cCCceEEEEEccCCcEEEEEECCCe
Q psy9319         126 GKKV------YDIC--IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       126 ~~~~------~~~~--~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ...-      ..+.  .-..+..|.|+|+|.+.+..  |+.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~  155 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ  155 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence            2111      1111  23457899999999887766  766

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.47  E-value=1.4  Score=44.39  Aligned_cols=110  Identities=14%  Similarity=0.101  Sum_probs=66.8

Q ss_pred             EEEEEEcC-CC-CEEEEEeCCCeEEEEeCCCCeeEEEEeeC---CCCEEEEEE-------eeCCCEEEEEeCCC------
Q psy9319          55 CICIEFDP-TG-KYFAVGSKDALVSLWDAAELTCIRTFQRL---DWPVRAISF-------SHDGALIASGSEDL------  116 (432)
Q Consensus        55 V~~l~~sp-dg-~~L~sgs~dg~I~iwd~~~~~~~~~~~~h---~~~V~~i~~-------spdg~~l~sgs~dg------  116 (432)
                      ...++|+| ++ .++++....+.|++.|+..+.....+...   ......++|       +++|..|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56899998 34 44455444567999999877655444322   235899999       99999777666543      


Q ss_pred             -eEEEEeCCC-CcEE-----EEEecCCceEEEEEccC-CcEEEEEECCCeEEEEeC
Q psy9319         117 -TIDIAHVES-GKKV-----YDICIQAATFTVAWHPK-QYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       117 -~V~vwd~~~-~~~~-----~~~~~~~~V~~l~fspd-g~~l~s~s~d~~I~vwd~  164 (432)
                       .|.+.+... +...     ..+........++++|+ +.++++-..++.|..+|+
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence             366776433 2211     22322223456788994 555555556777555554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.07  E-value=1.7  Score=39.91  Aligned_cols=151  Identities=13%  Similarity=0.057  Sum_probs=71.1

Q ss_pred             CcceeeeeeecCCCceeEEEEeecCccee--eEEEccCCcCEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCee
Q psy9319          16 PSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILKAHPVTCICIEFDPTGKYFAVGSKD-------ALVSLWDAAELTC   86 (432)
Q Consensus        16 ~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~sgs~d-------g~I~iwd~~~~~~   86 (432)
                      +.++ +.+..+.....-++..+|..+.+-  +..+........++.+  ++.+++.|+.+       ..+.+||+.+...
T Consensus       109 ~~iy-v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          109 GLLY-AVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TEEE-EEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CEEE-EEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            3444 333334433445566677655432  2112211122222222  56666666542       3588999887654


Q ss_pred             EEE--EeeCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEEEEEecCC--ceEEEEEccCCcEEEEEECCC
Q psy9319          87 IRT--FQRLDWPVRAISFSHDGALIASGSED-----LTIDIAHVESGKKVYDICIQA--ATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        87 ~~~--~~~h~~~V~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~~~~~~~~--~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ...  +....... ++. .-++.+++.|+.+     ..+.+||+.+.+-...-....  .-.+++ ..++.+++.|+.++
T Consensus       186 ~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          186 TYIAEMSTRRSGA-GVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDG  262 (302)
T ss_dssp             EEECCCSSCCBSC-EEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCS
T ss_pred             EECCCCccccccc-cEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCC
Confidence            322  11111111 222 2266677777654     368899998764332211111  111122 22677777777654


Q ss_pred             eEEEEeCCceEEeecCCC
Q psy9319         158 YDRKQDCGNLKVFGFLPE  175 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~  175 (432)
                      .   -.+..+.+||+.+.
T Consensus       263 ~---~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          263 S---CNLASVEYYNPTTD  277 (302)
T ss_dssp             S---SBCCCEEEEETTTT
T ss_pred             C---cccccEEEEcCCCC
Confidence            3   11234566666554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.91  E-value=2.8  Score=38.43  Aligned_cols=137  Identities=12%  Similarity=0.024  Sum_probs=65.7

Q ss_pred             CcceeeeeeecCCCceeEEEEeecCcce--eeEEEccCCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCeeEE
Q psy9319          16 PSLYQSSVLTDISPKQLDFKFKEHHKLE--EQNILKAHPVTCICIEFDPTGKYFAVGSKD-----ALVSLWDAAELTCIR   88 (432)
Q Consensus        16 ~~~l~~s~s~D~~~~~~~i~~~d~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-----g~I~iwd~~~~~~~~   88 (432)
                      +.++ +.+..+......++..+|..+.+  .+..+........++.+  ++.+++.|+.+     ..+.+||+.+.....
T Consensus       113 ~~ly-v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          113 DMIY-VSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TEEE-EECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEE-EEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            4444 33333333334456667765543  22222222222222222  56777777654     468899988765432


Q ss_pred             EEeeCCCCE-EEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEEEEEecC--CceEEEEEccCCcEEEEEECCC
Q psy9319          89 TFQRLDWPV-RAISFSHDGALIASGSED-----LTIDIAHVESGKKVYDICIQ--AATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        89 ~~~~h~~~V-~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~~~~~~~--~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      . .....+. ...+..-++.+++.|+.+     ..+.+||+.+.+-...-...  ..-.+++ .-++.+++.|+.++
T Consensus       190 ~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          190 V-TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDG  264 (301)
T ss_dssp             E-CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCS
T ss_pred             C-CCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCC
Confidence            2 1111111 111122356666777653     46899999876533221111  1111222 22677777777653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.56  E-value=1.1  Score=42.82  Aligned_cols=101  Identities=11%  Similarity=0.112  Sum_probs=58.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEE-------eeCCCCEEEEEEeeC---CCEEEEEe-C-------C
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF-------QRLDWPVRAISFSHD---GALIASGS-E-------D  115 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~i~~spd---g~~l~sgs-~-------d  115 (432)
                      ....++|.|+|+.|+.+...|.|.+++.. +.....+       .........++|+|+   +..|+.+. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            45799999999834445567999999864 3321111       112346789999996   44454442 2       2


Q ss_pred             CeEEEEeCCCC--c--EEEE-Ee-c------CCceEEEEEccCCcEEEEEEC
Q psy9319         116 LTIDIAHVESG--K--KVYD-IC-I------QAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus       116 g~V~vwd~~~~--~--~~~~-~~-~------~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ..|..|++..+  .  .... +. .      ......++|.|||.++++.+.
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            35766766543  1  1111 11 1      112457999999976665543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.46  E-value=2.2  Score=39.06  Aligned_cols=110  Identities=10%  Similarity=0.012  Sum_probs=55.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEEEEE
Q psy9319          63 TGKYFAVGSKD-----ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED-----LTIDIAHVESGKKVYDI  132 (432)
Q Consensus        63 dg~~L~sgs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~~~~  132 (432)
                      ++.+++.|+.+     ..+.+||+.+......-..........+...++.+++.|+.+     ..+.+||+.+..-...-
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            56677777644     368899988765432211111111111122366666776644     45889998776433221


Q ss_pred             ecCCc--eEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319         133 CIQAA--TFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       133 ~~~~~--V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                      ....+  -.+++ .-++.+++.|+.++.-   ....+.+||+.+..
T Consensus       192 ~~p~~r~~~~~~-~~~~~i~v~GG~~~~~---~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          192 PMATKRSGAGVA-LLNDHIYVVGGFDGTA---HLSSVEAYNIRTDS  233 (301)
T ss_dssp             CCSSCCBSCEEE-EETTEEEEECCBCSSS---BCCCEEEEETTTTE
T ss_pred             CCCcccccceEE-EECCEEEEEeCCCCCc---ccceEEEEeCCCCc
Confidence            11111  11222 2256777777765321   02335556655543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.32  E-value=7.7  Score=37.00  Aligned_cols=143  Identities=17%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEE----ccCCcCEEEEEEcCC---CCEEEEE-e-
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNIL----KAHPVTCICIEFDPT---GKYFAVG-S-   71 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l----~~h~~~V~~l~~spd---g~~L~sg-s-   71 (432)
                      |.+.-..++|.|++.++ ++-.     ....|...+..++..  +..+    ....+....++|+|+   +..|+.. + 
T Consensus        30 gL~~P~~ia~~pdG~ll-Vter-----~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLL-VSSR-----DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             CCSSEEEEEECTTSCEE-EEET-----TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             CCCCceEEEEcCCCcEE-EEEe-----cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            34455778899999876 4421     133445455444432  2222    123466889999995   3444432 2 


Q ss_pred             -CCCeEEEEeCCCC----------eeEE-EEee-CCCCEEEEEEeeCCCEEEEEeC-------------CCeEEEEeCCC
Q psy9319          72 -KDALVSLWDAAEL----------TCIR-TFQR-LDWPVRAISFSHDGALIASGSE-------------DLTIDIAHVES  125 (432)
Q Consensus        72 -~dg~I~iwd~~~~----------~~~~-~~~~-h~~~V~~i~~spdg~~l~sgs~-------------dg~V~vwd~~~  125 (432)
                       .++.|.-|.+..+          +.+. .+.. .......|.|.|||.+.++.+.             .|.|.-.+...
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence             3456666655431          1111 1211 1112356999999987666442             24555555542


Q ss_pred             C---------cEEEEEecCCceEEEEEccCCcEEEE
Q psy9319         126 G---------KKVYDICIQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus       126 ~---------~~~~~~~~~~~V~~l~fspdg~~l~s  152 (432)
                      .         ..+....+. ....++|+|+|.++++
T Consensus       184 ~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred             CccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence            2         123333232 3457889998765554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.15  E-value=3  Score=38.58  Aligned_cols=114  Identities=9%  Similarity=0.022  Sum_probs=56.1

Q ss_pred             CCCCEEEEEeC-C-----CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC-----eEEEEeCCCCcEEE
Q psy9319          62 PTGKYFAVGSK-D-----ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDL-----TIDIAHVESGKKVY  130 (432)
Q Consensus        62 pdg~~L~sgs~-d-----g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg-----~V~vwd~~~~~~~~  130 (432)
                      .++.+++.|+. +     ..+.+||+.+......-.-........+..-++.+++.|+.++     .+.+||+.+.+-..
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            35667777765 2     4688999887643221111111111111223667777776543     58889988764332


Q ss_pred             EEecC--CceEEEEEccCCcEEEEEECCC------eEEEEeCCceEEeecCCCc
Q psy9319         131 DICIQ--AATFTVAWHPKQYLLAYACDDK------YDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       131 ~~~~~--~~V~~l~fspdg~~l~s~s~d~------~I~vwd~~~i~vwd~~~~~  176 (432)
                      .-..+  ..-.+++. -++.+++.|+.++      ....-.+..+.+||+.+..
T Consensus       227 ~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          227 FEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            21111  11112222 2567777777642      1111122336667766544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.95  E-value=5.5  Score=37.14  Aligned_cols=113  Identities=6%  Similarity=-0.034  Sum_probs=67.5

Q ss_pred             eeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCC
Q psy9319          31 QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG  106 (432)
Q Consensus        31 ~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg  106 (432)
                      ...|+..+....... .+...  .  +..|++++.+|+-..    ....|...++.. .....+..+..    .+|+|++
T Consensus        87 ~~~Iy~i~~dg~~~~-~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           87 RNSLCRIKRNGHGST-VLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             SEEEEEEETTSCCCE-EEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEET
T ss_pred             CCeEEEEeCCCCcce-EeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEEC
Confidence            345555555444322 23221  1  236788888888765    344566667764 33445554433    4578889


Q ss_pred             CEEEEEeC-CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC
Q psy9319         107 ALIASGSE-DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       107 ~~l~sgs~-dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      ..|+-.+. ...|.+.++..+.....+.  +... ..++|++.+|+....+
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGG
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcC
Confidence            88887665 6789999987665443332  3332 3466988888877644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.94  E-value=6.4  Score=36.67  Aligned_cols=131  Identities=8%  Similarity=-0.084  Sum_probs=72.2

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-------------
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-------------   73 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-------------   73 (432)
                      .+..-+++++..+..+...|.    ..++..+. +|.....+...    .+--++++|.+|+.+...             
T Consensus        16 ~n~g~~~~~g~~iy~~n~~d~----~~ly~~~~-dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n   86 (302)
T 3s25_A           16 YNAGLFCESDGEVFFSNTNDN----GRLYAMNI-DGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYD   86 (302)
T ss_dssp             GGTTCEEEETTEEEEEEGGGT----TEEEEEET-TSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCC
T ss_pred             ecceEEEEeCCEEEEEeCCCC----ceEEEEcC-CCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccC
Confidence            344444555555544433332    23333333 33333344332    234568889988777543             


Q ss_pred             -CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe----CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCc
Q psy9319          74 -ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS----EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQY  148 (432)
Q Consensus        74 -g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs----~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~  148 (432)
                       ..|+..++..+.. ..+...  .  +..|+|++.+|+-..    .+..|...++..........+..    .+|+|++.
T Consensus        87 ~~~Iy~i~~dg~~~-~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~  157 (302)
T 3s25_A           87 RNSLCRIKRNGHGS-TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDR  157 (302)
T ss_dssp             SEEEEEEETTSCCC-EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETT
T ss_pred             CCeEEEEeCCCCcc-eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECC
Confidence             3677888876543 233222  2  236888999888775    34567777776544333222322    45688888


Q ss_pred             EEEEEEC
Q psy9319         149 LLAYACD  155 (432)
Q Consensus       149 ~l~s~s~  155 (432)
                      .|+..+.
T Consensus       158 ~iy~t~~  164 (302)
T 3s25_A          158 YFYYNNP  164 (302)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            8887765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.79  E-value=2.3  Score=40.62  Aligned_cols=138  Identities=11%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             cccccccCCCCc-ceeeeeeecCCCceeEEEEeecCcceee---EEE----ccCCcCEEEEEEcCC---CCEEEEE-eC-
Q psy9319           6 FIPLLGLNPRPS-LYQSSVLTDISPKQLDFKFKEHHKLEEQ---NIL----KAHPVTCICIEFDPT---GKYFAVG-SK-   72 (432)
Q Consensus         6 ~I~~l~~~p~~~-~l~~s~s~D~~~~~~~i~~~d~~~~~~~---~~l----~~h~~~V~~l~~spd---g~~L~sg-s~-   72 (432)
                      .-..++|.|++. ++ ++.. .     ..|.+.+. .+...   ..+    ....+....++|+|+   +..|+.+ +. 
T Consensus        19 ~P~~i~~~pdG~~l~-V~e~-~-----G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~   90 (353)
T 2g8s_A           19 HPWALAFLPDNHGML-ITLR-G-----GELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV   90 (353)
T ss_dssp             SEEEEEECSTTCCEE-EEET-T-----TEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred             CcEEEEEcCCCCEEE-EEeC-C-----ceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence            346788999998 66 4422 1     23444443 23221   111    122345789999995   4444433 32 


Q ss_pred             ------CCeEEEEeCCCC--e--eEEE-EeeC------CCCEEEEEEeeCCCEEEEEeC-------------CCeEEEEe
Q psy9319          73 ------DALVSLWDAAEL--T--CIRT-FQRL------DWPVRAISFSHDGALIASGSE-------------DLTIDIAH  122 (432)
Q Consensus        73 ------dg~I~iwd~~~~--~--~~~~-~~~h------~~~V~~i~~spdg~~l~sgs~-------------dg~V~vwd  122 (432)
                            ...|..|++...  .  .... +...      ......+.|.|||.+.++.+.             .|.|.-++
T Consensus        91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence                  235666666432  1  1111 2111      012357999999965554432             24677777


Q ss_pred             CCCC--------------cEEEEEecCCceEEEEEcc-CCcEEEE
Q psy9319         123 VESG--------------KKVYDICIQAATFTVAWHP-KQYLLAY  152 (432)
Q Consensus       123 ~~~~--------------~~~~~~~~~~~V~~l~fsp-dg~~l~s  152 (432)
                      ....              ..+.... ......++|+| +|.++++
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCCCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEEE
Confidence            6532              1122222 23467899999 5655544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.70  E-value=1.8  Score=45.63  Aligned_cols=161  Identities=12%  Similarity=0.006  Sum_probs=76.7

Q ss_pred             CCcceeeeeeecCCCceeEEEEeecCcc--eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCeeEEEE
Q psy9319          15 RPSLYQSSVLTDISPKQLDFKFKEHHKL--EEQNILKAHPVTCICIEFDPTGKYFAVGSKDA--LVSLWDAAELTCIRTF   90 (432)
Q Consensus        15 ~~~~l~~s~s~D~~~~~~~i~~~d~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg--~I~iwd~~~~~~~~~~   90 (432)
                      ++.++++.+........-++.++|..+.  ..+..+........++ .-.++.+++.|+.++  .+.+||+.+......-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~-~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSAC-SLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEE-ECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEE-EEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            5555544443332212334555665553  2222222212222222 224788888887655  6899999876543221


Q ss_pred             e-----eCCCCEEEEEEeeC-CCEEEEEeC--C-----CeEEEEeCCCCcE-----EEEEec----CCceEEEEEccCCc
Q psy9319          91 Q-----RLDWPVRAISFSHD-GALIASGSE--D-----LTIDIAHVESGKK-----VYDICI----QAATFTVAWHPKQY  148 (432)
Q Consensus        91 ~-----~h~~~V~~i~~spd-g~~l~sgs~--d-----g~V~vwd~~~~~~-----~~~~~~----~~~V~~l~fspdg~  148 (432)
                      .     .......++.+..+ +.+++.|+.  +     ..+.+||+.+..-     ...+..    ...-.+++...++.
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence            1     01112223445554 566666664  2     4688999988771     222211    11112233333377


Q ss_pred             EEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319         149 LLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                      +++.|+.++.-..-....+.+||+.+..
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            7777775422100112345556655543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.35  E-value=3.5  Score=37.81  Aligned_cols=107  Identities=17%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCeeEEEEeeCCCC--EEEEEEeeCCCEEEEEeCC-------CeEEEEeCCCCcE
Q psy9319          63 TGKYFAVGSKDA-----LVSLWDAAELTCIRTFQRLDWP--VRAISFSHDGALIASGSED-------LTIDIAHVESGKK  128 (432)
Q Consensus        63 dg~~L~sgs~dg-----~I~iwd~~~~~~~~~~~~h~~~--V~~i~~spdg~~l~sgs~d-------g~V~vwd~~~~~~  128 (432)
                      ++.+++.|+.++     .+.+||+.+...... .....+  -.+++ .-++.+++.|+.+       ..+.+||+.+..-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            566777776553     578889887654322 111111  11222 2256666666532       3588999877643


Q ss_pred             EEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCC
Q psy9319         129 VYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE  175 (432)
Q Consensus       129 ~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~  175 (432)
                      ...-.  ....-.+++. -++.+++.|+.++..   ....+.+||+.++
T Consensus       186 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~---~~~~~~~yd~~~~  230 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPL---VRKSVEVYDPTTN  230 (302)
T ss_dssp             EEECCCSSCCBSCEEEE-ETTEEEEECCBSSSS---BCCCEEEEETTTT
T ss_pred             EECCCCccccccccEEE-ECCEEEEECCCCCCc---ccceEEEEeCCCC
Confidence            32211  1111112222 257777777765420   1223555555543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.34  E-value=3  Score=38.35  Aligned_cols=139  Identities=9%  Similarity=0.016  Sum_probs=64.9

Q ss_pred             eeEEEEeecCccee--eEEEccCCcCEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCeeEEEEeeCCCCEEEEEE
Q psy9319          31 QLDFKFKEHHKLEE--QNILKAHPVTCICIEFDPTGKYFAVGSKD------ALVSLWDAAELTCIRTFQRLDWPVRAISF  102 (432)
Q Consensus        31 ~~~i~~~d~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~sgs~d------g~I~iwd~~~~~~~~~~~~h~~~V~~i~~  102 (432)
                      .-++..+|..+.+-  +..+........++.+  ++.+++.|+.+      ..+.+||+.+......-..........+.
T Consensus        69 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  146 (306)
T 3ii7_A           69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV  146 (306)
T ss_dssp             CCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             cceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE
Confidence            34566667665432  2222221122222222  56677777755      46889998876543221111111111112


Q ss_pred             eeCCCEEEEEeC---------CCeEEEEeCCCCcEEEEEecCCc--eEEEEEccCCcEEEEEECCCeEEEEeCCceEEee
Q psy9319         103 SHDGALIASGSE---------DLTIDIAHVESGKKVYDICIQAA--TFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFG  171 (432)
Q Consensus       103 spdg~~l~sgs~---------dg~V~vwd~~~~~~~~~~~~~~~--V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd  171 (432)
                      .-++.+++.|+.         -..+.+||+.+..-...-....+  -.+++.. ++.+++.|+.++.   -.+..+.+||
T Consensus       147 ~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~---~~~~~~~~yd  222 (306)
T 3ii7_A          147 EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGL---GGLDNVEYYD  222 (306)
T ss_dssp             EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETT---EEBCCEEEEE
T ss_pred             EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCC---CCCceEEEee
Confidence            236666666653         34588999987743222111111  1122222 5677777765432   0123455566


Q ss_pred             cCCC
Q psy9319         172 FLPE  175 (432)
Q Consensus       172 ~~~~  175 (432)
                      +.+.
T Consensus       223 ~~~~  226 (306)
T 3ii7_A          223 IKLN  226 (306)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            5554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.26  E-value=3  Score=38.28  Aligned_cols=152  Identities=9%  Similarity=0.036  Sum_probs=69.9

Q ss_pred             CCcceeeeeeecCCCceeEEEEeecCccee--eEEEccCCcCEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCC
Q psy9319          15 RPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILKAHPVTCICIEFDPTGKYFAVGSK---------DALVSLWDAAE   83 (432)
Q Consensus        15 ~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~sgs~---------dg~I~iwd~~~   83 (432)
                      ++.++++.+.........++..+|..+..-  +..+........++.  -++.+++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            344444443321333344566666655432  211211111222222  25666666653         34588999987


Q ss_pred             CeeEEEEeeCCCC--EEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEEEEEecC---CceEEEEEccCCcEEEEE
Q psy9319          84 LTCIRTFQRLDWP--VRAISFSHDGALIASGSED-----LTIDIAHVESGKKVYDICIQ---AATFTVAWHPKQYLLAYA  153 (432)
Q Consensus        84 ~~~~~~~~~h~~~--V~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~~~~~~~---~~V~~l~fspdg~~l~s~  153 (432)
                      ...... .....+  -.++. .-++.+++.|+.+     ..+.+||+.+.+-...-..+   .....+.+  ++.+++.|
T Consensus       179 ~~W~~~-~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G  254 (306)
T 3ii7_A          179 ETWTEL-CPMIEARKNHGLV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLA  254 (306)
T ss_dssp             TEEEEE-CCCSSCCBSCEEE-EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEE
T ss_pred             CeEEEC-CCccchhhcceEE-EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEe
Confidence            654322 111111  11222 2256666666543     45889998776422211111   11222333  67788888


Q ss_pred             ECCCeEEEEeCCceEEeecCCC
Q psy9319         154 CDDKYDRKQDCGNLKVFGFLPE  175 (432)
Q Consensus       154 s~d~~I~vwd~~~i~vwd~~~~  175 (432)
                      +.++.-   .+..+.+||+.+.
T Consensus       255 G~~~~~---~~~~~~~yd~~~~  273 (306)
T 3ii7_A          255 GFQGVG---RLGHILEYNTETD  273 (306)
T ss_dssp             CBCSSS---BCCEEEEEETTTT
T ss_pred             CcCCCe---eeeeEEEEcCCCC
Confidence            755321   1223555665554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.33  E-value=21  Score=35.29  Aligned_cols=146  Identities=8%  Similarity=0.049  Sum_probs=92.7

Q ss_pred             ccCCCCcceeeeeee--cCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC---CCEEEEEeCC---CeEEEEeCC
Q psy9319          11 GLNPRPSLYQSSVLT--DISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT---GKYFAVGSKD---ALVSLWDAA   82 (432)
Q Consensus        11 ~~~p~~~~l~~s~s~--D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~sgs~d---g~I~iwd~~   82 (432)
                      ..+++...++..|..  ++.+ .+.+++++.+. +..+.+.||.+....+.+..+   ..+++.+...   +.+.|-++.
T Consensus       157 ~~d~~~kW~~l~GI~~~~~~v-~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~  234 (494)
T 1bpo_A          157 RTDAKQKWLLLTGISAQQNRV-VGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG  234 (494)
T ss_dssp             EECTTSSEEEEEEEEEETTEE-EEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred             EECCCCCeEEEEeecccCCcc-cceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence            346666666555442  3322 47778887654 456788999776655544322   1244444443   688888875


Q ss_pred             CC---ee------EEEEeeC---CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcE
Q psy9319          83 EL---TC------IRTFQRL---DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYL  149 (432)
Q Consensus        83 ~~---~~------~~~~~~h---~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~  149 (432)
                      ..   ..      +..+...   .....++..|+....++..+.-|.|.++|+.+|.++..-. ...+|...+.+....-
T Consensus       235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~G  314 (494)
T 1bpo_A          235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG  314 (494)
T ss_dssp             CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE
T ss_pred             CCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCc
Confidence            32   11      1111111   3446678889988899999999999999999999998777 5556666555555445


Q ss_pred             EEEEECCCe
Q psy9319         150 LAYACDDKY  158 (432)
Q Consensus       150 l~s~s~d~~  158 (432)
                      ++.....|.
T Consensus       315 i~~Vnr~Gq  323 (494)
T 1bpo_A          315 IIGVNRKGQ  323 (494)
T ss_dssp             EEEEETTCE
T ss_pred             EEEEccCce
Confidence            555567776

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.23  E-value=0.66  Score=47.23  Aligned_cols=70  Identities=13%  Similarity=0.068  Sum_probs=51.4

Q ss_pred             CCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCC------Cc-------EEEEEecCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          95 WPVRAISFSHDGALIASGS-EDLTIDIAHVES------GK-------KVYDICIQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        95 ~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~------~~-------~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      .....+.++|||++++.++ .+.+|.++|+..      +.       ........-.....+|+++|....+..-|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            4556789999999988776 688999999873      11       133344556678899999996555666899966


Q ss_pred             EEeC
Q psy9319         161 KQDC  164 (432)
Q Consensus       161 vwd~  164 (432)
                      -|++
T Consensus       403 kWni  406 (638)
T 3sbq_A          403 KWNM  406 (638)
T ss_dssp             EEEH
T ss_pred             EEec
Confidence            6665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.09  E-value=3.9  Score=37.70  Aligned_cols=108  Identities=9%  Similarity=0.073  Sum_probs=54.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCeeEEE--EeeCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEEE
Q psy9319          63 TGKYFAVGSKD-----ALVSLWDAAELTCIRT--FQRLDWPVRAISFSHDGALIASGSED-----LTIDIAHVESGKKVY  130 (432)
Q Consensus        63 dg~~L~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~V~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~~  130 (432)
                      ++.+++.|+.+     ..+.+||+.+......  +.........+.  -++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            56677777654     4588999886653221  111111112222  266666777654     468999998764322


Q ss_pred             EEecC--CceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCc
Q psy9319         131 DICIQ--AATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEP  176 (432)
Q Consensus       131 ~~~~~--~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~  176 (432)
                      .-...  ..-.+++. -++.+++.|+.++.-   .+..+.+||+.+..
T Consensus       246 ~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~---~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          246 VAPMKHRRSALGITV-HQGRIYVLGGYDGHT---FLDSVECYDPDTDT  289 (308)
T ss_dssp             CCCCSSCCBSCEEEE-ETTEEEEECCBCSSC---BCCEEEEEETTTTE
T ss_pred             CCCCCCCccceEEEE-ECCEEEEEcCcCCCc---ccceEEEEcCCCCE
Confidence            11111  11112222 256777777755420   12335666665543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.83  E-value=1.4  Score=42.12  Aligned_cols=110  Identities=9%  Similarity=-0.032  Sum_probs=66.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeEEEEeeC-CCCEEEEEE--eeCCCEEEEE--eCCCeEEEEeCCCCcEEEEEecC----
Q psy9319          65 KYFAVGSKDALVSLWDAAELTCIRTFQRL-DWPVRAISF--SHDGALIASG--SEDLTIDIAHVESGKKVYDICIQ----  135 (432)
Q Consensus        65 ~~L~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~i~~--spdg~~l~sg--s~dg~V~vwd~~~~~~~~~~~~~----  135 (432)
                      ..++.++.||.|.-+|..+|+..-.+... ..++....-  .+.+..++.+  +.||.|..++..+|.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46788899999999999999988777643 122221110  0112234433  58999999999888655544421    


Q ss_pred             -CceEE---EEE-cc----CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeec
Q psy9319         136 -AATFT---VAW-HP----KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       136 -~~V~~---l~f-sp----dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                       +++..   ... .+    .+..+++|+.++.        +...|+.+|+.+-.+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~--------l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI--------MYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEE--------EEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCE--------EEEEECCCCcEEEEEe
Confidence             22221   001 01    3556788888988        6666667776666554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.51  E-value=30  Score=38.66  Aligned_cols=97  Identities=11%  Similarity=0.007  Sum_probs=62.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCeeEEEE-eeCCCCEEEEEEeeC------CCEEEEEeC-CCeEEEEeCCCCcEEEEEec--
Q psy9319          65 KYFAVGSKDALVSLWDAAELTCIRTF-QRLDWPVRAISFSHD------GALIASGSE-DLTIDIAHVESGKKVYDICI--  134 (432)
Q Consensus        65 ~~L~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~i~~spd------g~~l~sgs~-dg~V~vwd~~~~~~~~~~~~--  134 (432)
                      .+++.++ .+.+.++.+..+...... ......|.|+++.|.      +.+++.|.. |++|+|+++.+.+.+.....  
T Consensus       524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~  602 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG  602 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred             CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence            3455554 567777776655432111 124568999999863      469999997 99999999988777665443  


Q ss_pred             CCceEEEEEcc--CCcEEEEEECCCeEEEE
Q psy9319         135 QAATFTVAWHP--KQYLLAYACDDKYDRKQ  162 (432)
Q Consensus       135 ~~~V~~l~fsp--dg~~l~s~s~d~~I~vw  162 (432)
                      ...+.++.+..  ...+|..|-.||.+.-+
T Consensus       603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          603 EIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            23445554432  34678888899985433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.24  E-value=34  Score=38.20  Aligned_cols=90  Identities=9%  Similarity=0.013  Sum_probs=58.9

Q ss_pred             eEEEEeCCCCeeEEEEeeCC-CCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE--EEEecCCceEEEEEccC-----
Q psy9319          75 LVSLWDAAELTCIRTFQRLD-WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV--YDICIQAATFTVAWHPK-----  146 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~-~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~--~~~~~~~~V~~l~fspd-----  146 (432)
                      .|++.+...+..+..+.... ..|...+.+  +..++.++ ++.+.++.+..++..  ........|.|+++.|.     
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~  569 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNG  569 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTT
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcc
Confidence            46677765555555665332 346655544  34566665 577888887765432  22336678999999863     


Q ss_pred             -CcEEEEEEC-CCeEEEEeCCce
Q psy9319         147 -QYLLAYACD-DKYDRKQDCGNL  167 (432)
Q Consensus       147 -g~~l~s~s~-d~~I~vwd~~~i  167 (432)
                       +.+++.|.. |++|+|+++..+
T Consensus       570 ~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          570 LSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             CCSEEEEEETTTTEEEEEETTTC
T ss_pred             cccEEEEEECCCCEEEEEECCCC
Confidence             479999996 999999987653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.04  E-value=11  Score=34.75  Aligned_cols=94  Identities=11%  Similarity=0.128  Sum_probs=46.7

Q ss_pred             CCCCEEEEEeC------CCeEEEEeCCCCeeEEEEeeCC-CCEEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEE
Q psy9319          62 PTGKYFAVGSK------DALVSLWDAAELTCIRTFQRLD-WPVRAISFSHDGALIASGSED-----LTIDIAHVESGKKV  129 (432)
Q Consensus        62 pdg~~L~sgs~------dg~I~iwd~~~~~~~~~~~~h~-~~V~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~  129 (432)
                      .++.+++.|+.      -..+.+||+.+......-.... ..-.+++ .-++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            35666666653      2358899998765432211111 1111222 2366666776543     35778998876532


Q ss_pred             EEEecCCc--eEEEEEccCCcEEEEEECCC
Q psy9319         130 YDICIQAA--TFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       130 ~~~~~~~~--V~~l~fspdg~~l~s~s~d~  157 (432)
                      ..-..+.+  -.+++ ..++.+++.|+.+.
T Consensus       236 ~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~  264 (318)
T 2woz_A          236 VMTEFPQERSSISLV-SLAGSLYAIGGFAM  264 (318)
T ss_dssp             ECCCCSSCCBSCEEE-EETTEEEEECCBCC
T ss_pred             ECCCCCCcccceEEE-EECCEEEEECCeec
Confidence            22111111  11222 23567777776543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.80  E-value=19  Score=39.22  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=33.4

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe
Q psy9319          96 PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC  133 (432)
Q Consensus        96 ~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~  133 (432)
                      .+.+++..++..++++-|.|+++++|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46777778888899999999999999999999988763

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.53  E-value=5.3  Score=40.71  Aligned_cols=101  Identities=12%  Similarity=0.031  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEeCCCC------e------e-EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q psy9319          56 ICIEFDPTGKYFAVGS-KDALVSLWDAAEL------T------C-IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIA  121 (432)
Q Consensus        56 ~~l~~spdg~~L~sgs-~dg~I~iwd~~~~------~------~-~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vw  121 (432)
                      ..+.++|||++++.++ .+.+|.++|+...      +      + +.... -.-.....+|.++|....|.--|..|.-|
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence            3677899999987655 4778999998731      1      1 11222 33456788999999544445579999999


Q ss_pred             eCCCC----------cEEEEEecCCceEEEEE------ccCCcEEEEEECCC
Q psy9319         122 HVESG----------KKVYDICIQAATFTVAW------HPKQYLLAYACDDK  157 (432)
Q Consensus       122 d~~~~----------~~~~~~~~~~~V~~l~f------spdg~~l~s~s~d~  157 (432)
                      ++...          ..+..+.....+-.+.-      .|+|++|++...=.
T Consensus       405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~s  456 (638)
T 3sbq_A          405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFS  456 (638)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCC
T ss_pred             eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccc
Confidence            98642          34555553334444433      57899999986533

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.92  E-value=12  Score=37.07  Aligned_cols=105  Identities=11%  Similarity=0.118  Sum_probs=61.2

Q ss_pred             cCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCe---eEEEEe---------eCCCCEEEEEEeeC----CCEEEEEeC-
Q psy9319          53 VTCICIEFDPTGK-YFAVGSKDALVSLWDAAELT---CIRTFQ---------RLDWPVRAISFSHD----GALIASGSE-  114 (432)
Q Consensus        53 ~~V~~l~~spdg~-~L~sgs~dg~I~iwd~~~~~---~~~~~~---------~h~~~V~~i~~spd----g~~l~sgs~-  114 (432)
                      ...+.++|.|+|. .|+.+...|.|++++.....   .+..+.         ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3457899999986 34455678999999764321   222221         11456889999996    333333221 


Q ss_pred             -C----------CeEEEEeCCC----------CcEEEEEe---cCCceEEEEEccCCcEEEEEECCC
Q psy9319         115 -D----------LTIDIAHVES----------GKKVYDIC---IQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus       115 -d----------g~V~vwd~~~----------~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                       +          ..|.-|.+..          .+.+..+.   .......|+|.|||.+.++.+..+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence             1          1444465532          12233332   233467899999998777766544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=84.46  E-value=3.3  Score=38.18  Aligned_cols=107  Identities=15%  Similarity=0.072  Sum_probs=51.9

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCeeEEE--EeeCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCcEEE
Q psy9319          63 TGKYFAVGSKD-----ALVSLWDAAELTCIRT--FQRLDWPVRAISFSHDGALIASGSED-----LTIDIAHVESGKKVY  130 (432)
Q Consensus        63 dg~~L~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~V~~i~~spdg~~l~sgs~d-----g~V~vwd~~~~~~~~  130 (432)
                      ++.+++.|+.+     ..+.+||+.+......  +.........+.  -++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            56666766543     3688899887653221  111111111222  256666666644     458899987764322


Q ss_pred             EEe--cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCC
Q psy9319         131 DIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE  175 (432)
Q Consensus       131 ~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~  175 (432)
                      .-.  ....-.+++.. ++.+++.|+.++.-   ....+.+||+.+.
T Consensus       199 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~---~~~~v~~yd~~~~  241 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL-HNCIYAAGGYDGQD---QLNSVERYDVETE  241 (308)
T ss_dssp             CCCCSSCCBSCEEEEE-TTEEEEECCBCSSS---BCCCEEEEETTTT
T ss_pred             CCCCCCccccceEEEE-CCEEEEEeCCCCCC---ccceEEEEeCCCC
Confidence            111  11111122222 56777777655320   1233555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.4 bits (181), Expect = 2e-15
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 9/143 (6%)

Query: 24  LTDISPKQLDFKFKEHHKL--------EEQNILKAHPVTCICIEFDPTGKYFAVGSKDAL 75
           +  ++ K+   + +EH  +        E      +        +    G +   GS+D  
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 76  VSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CI 134
           + +WD +   C+ T    D  VR + F   G  I S ++D T+ +   ++ + +  +   
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288

Query: 135 QAATFTVAWHPKQYLLAYACDDK 157
           +    ++ +H     +     D+
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQ 311

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 17/86 (19%), Positives = 32/86 (37%)

Query: 35  KFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD 94
           K  +         L  H      + F   GK+    + D  + +WD     C++T    +
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289

Query: 95  WPVRAISFSHDGALIASGSEDLTIDI 120
             V ++ F      + +GS D T+ +
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 35/180 (19%), Positives = 53/180 (29%), Gaps = 47/180 (26%)

Query: 41  KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
           +  E+  L  H  PVT +   F P        S+DA + +WD       RT +     V+
Sbjct: 6   RPPEKYALSGHRSPVTRVI--FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 99  AI------------------------------------------SFSHDGALIASGSEDL 116
            I                                          S   +G  I S S D 
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 117 TIDIAHVESGKKVYDICI-QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
           TI +  V++G  V      +     V  +    L+A   +D+  R       +    L E
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 32/162 (19%), Positives = 47/162 (29%), Gaps = 21/162 (12%)

Query: 34  FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
            K  E            H      +  +  G   A  S D  V +W  A   C    +  
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 94  DWPVRAISFSHD--------------------GALIASGSEDLTIDIAHVESGKKVYDIC 133
              V  IS++ +                    G  + SGS D TI +  V +G  +  + 
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 134 IQAATFT-VAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLP 174
                   V +H     +    DDK  R  D  N +    L 
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 1/138 (0%)

Query: 34  FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
            K  +    E    +  H      +   P G +    S+D  + +W+     C++TF   
Sbjct: 83  IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 142

Query: 94  DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI-QAATFTVAWHPKQYLLAY 152
              VR +  + DG LIAS S D T+ +  V + +   ++   +     ++W P+    + 
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202

Query: 153 ACDDKYDRKQDCGNLKVF 170
           +     + K+        
Sbjct: 203 SEATGSETKKSGKPGPFL 220

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 43  EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
                L AH      ++F  T  Y   GS D  V +W+
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.7 bits (179), Expect = 5e-15
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 13/117 (11%)

Query: 52  PVTCICIEFDPTGKYFAVGSKDALVSLWDAA--ELTCIRTFQRLDWPVRAISFSHDGALI 109
           P++C    ++      A+   +  V +++ +  +   +   +  +  V  + ++ D   I
Sbjct: 9   PISCHA--WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66

Query: 110 ASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN 166
            +   D             V+ +  +    T+                 ++K   G+
Sbjct: 67  VTCGTDRNA---------YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 114

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 10/55 (18%), Positives = 16/55 (29%)

Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW 95
          K  + + LK H      +++ P          D    +W     T   T   L  
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 94

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 43  EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW--PVRAI 100
             +     H      I F P G  FA GS DA   L+D      + T+   +    + ++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKY 158
           SFS  G L+ +G +D   ++       +   +         +        +A    D +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 31  QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF 90
           +L     +   +   +      +T +   F  +G+    G  D   ++WDA +       
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVS--FSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 91  QRLDWPVRAISFSHDGALIASGSEDLTI 118
              D  V  +  + DG  +A+GS D  +
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 4e-11
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
           H    + +   P  + F  G+ DA   LWD  E  C +TF   +  + AI F  +G   A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 111 SGSEDLTIDI---AHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
           +GS+D T  +      +         I     +V++     LL    DD 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 41  KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
           ++  +  L+ H   +  +   +    +     S+D  + +WD+     +         V 
Sbjct: 44  QMRTRRTLRGHLAKIYAMH--WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101

Query: 99  AISFSHDGALI 109
             +++  G  +
Sbjct: 102 TCAYAPSGNYV 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 83  ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTV 141
           ++   RT +     + A+ +  D  L+ S S+D  + I    +  KV+ I    +   T 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 142 AWHPKQYLLAYACDDKYDRKQDC 164
           A+ P    +A    D      + 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNL 126

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 41  KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
           K +   +L  H     C+     G   A GS D+ + +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 5e-14
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
           H    + ++F   GK+F    KD L++ W       I   +     V +   S D   I 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSCDISVDDKYIV 322

Query: 111 SGSEDLTIDIAHVESGKKVYDI 132
           +GS D             VY++
Sbjct: 323 TGSGDKKA---------TVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 4e-09
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
                  + + PTG++ AVG + + V +    +    +     +  V ++ F++ G    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-ESCVLSLKFAYCGKWFV 281

Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
           S  +D  ++      G  ++     ++  +         +     DK
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 22/168 (13%), Positives = 43/168 (25%), Gaps = 12/168 (7%)

Query: 6   FIPLLGLNPRPSLYQSS----VLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD 61
           F   +G  P  S + ++          P  L       H  +   +     V  +     
Sbjct: 3   FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVT--IS 60

Query: 62  PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-----PVRAISFSHDGALIASGSEDL 116
              ++   G     V +WD +         +LD       +R+     DG  +  G E  
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

Query: 117 TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC 164
           T+ I  + +        + ++                     D     
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 50  AHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
               + +  +     KY   GS D   ++++
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 6e-13
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 19/133 (14%)

Query: 44  EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL------------TCIRTFQ 91
           E      H  +   + F   G+    GS D  V LW+                TC  T+ 
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 92  RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY-------DICIQAATFTVAWH 144
                V +++ + +   I SGS+D  +     +SG  +         +   A     +  
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365

Query: 145 PKQYLLAYACDDK 157
           P+  + A    D 
Sbjct: 366 PEYNVFATGSGDC 378

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 1e-10
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 17  SLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALV 76
           SL +S  L ++         K  +    +     H    + +      +Y   GSKD  V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 77  SLWDAAELTCIRTFQRLDWPVRAI------SFSHDGALIASGSEDLTIDI 120
             WD      +   Q     V ++      S   +  + A+GS D    I
Sbjct: 333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 28/148 (18%)

Query: 29  PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIR 88
           P+++D +   H  L+  +      V C+   F   G+Y A G  +    ++  ++ + + 
Sbjct: 48  PREIDVEL--HKSLDHTS-----VVCCVK--FSNDGEYLATGC-NKTTQVYRVSDGSLVA 97

Query: 89  TFQ------------------RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY 130
                                  D  +R++ FS DG  +A+G+ED  I I  +E+ K V 
Sbjct: 98  RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157

Query: 131 DICIQAATFTVAWHPKQYLLAYACDDKY 158
            +           +        +     
Sbjct: 158 ILQGHEQDIYSLDYFPSGDKLVSGSGDR 185

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 29/152 (19%)

Query: 40  HKLEEQNILKAH--PVTCICIEFDPTGKYFAV-GSKDALVSLWDAA-----ELTCIRTFQ 91
           H L   N    H  P+    ++ D      A+    +    L++ A     ++   ++  
Sbjct: 1   HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLD 60

Query: 92  RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI------------------- 132
                V  + FS+DG  +A+G    T  +  V  G  V  +                   
Sbjct: 61  HTSV-VCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 133 CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC 164
                  +V + P    LA   +D+  R  D 
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 10/157 (6%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
           H      +++ P+G     GS D  V +WD     C  T    D          DG  IA
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221

Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFT--------VAWHPKQYLLAYACDDKYDRKQ 162
           +GS D  + +   E+G  V  +  +  + T        V +      +     D+  +  
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 163 DC--GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQ 197
           +    N K     P              +V +    Q
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 6/44 (13%)

Query: 47  ILKAH--PVTCICI----EFDPTGKYFAVGSKDALVSLWDAAEL 84
           +L+ H   V  + +       P    FA GS D    +W   ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 6e-12
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 44  EQNILKAH---PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
           ++  L+ H    +TC          Y   G+ D ++ ++D+     +      D  V A+
Sbjct: 4   QRTTLRGHMTSVITC----LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59

Query: 101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDR 160
            ++H G ++ SGS D T+ +  ++ G   +      +T       +   + Y      D 
Sbjct: 60  KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 161 K 161
            
Sbjct: 119 T 119

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALI 109
             ++ I   F  +      GS +   ++++      +      D   + +++F     L+
Sbjct: 282 TNLSAITT-FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338

Query: 110 ASGSEDLTIDI 120
           A+  +D    +
Sbjct: 339 AAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 86  CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--QAATFTVAW 143
             +            +F     ++ SGSE+   +I ++ SGK V+   +      ++V +
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNF 332

Query: 144 HPKQYLLAYACDDK 157
             K  + A   D +
Sbjct: 333 KGKTLVAAVEKDGQ 346

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.8 bits (153), Expect = 6e-12
 Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 5/100 (5%)

Query: 41  KLEEQNILKAHPVTC----ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWP 96
           +  +  +  + P T     + +   P G      +  + V       LT    +      
Sbjct: 2   EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQ 60

Query: 97  VRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQA 136
                 S  G   ASG     + I        +    I  
Sbjct: 61  TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 3e-09
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 55  CICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR-LDWPVRAISFSHDGALIASGS 113
              + + P G   A  S D  + +W+ A L   +T         + +        + S S
Sbjct: 241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300

Query: 114 EDLTIDIAHVE 124
            +  I+  + E
Sbjct: 301 ANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV-------RAISFS 103
           H      + ++P G  FA    D  + L++  + T    F+               +++S
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 104 HDGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQYLLAYACDDKY 158
            DG  IAS S D TI I +V + K    I     I+     + W  +   L     + +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGF 304

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (145), Expect = 9e-11
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 19/133 (14%)

Query: 41  KLEEQNILKAHPVT----CICIEFDPTGKYFAVGS-KDALVSLWD--AAELTCIRTFQ-R 92
            +  + I+   P T       + +DPT    A    K A V   D   +++  +  F   
Sbjct: 2   SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61

Query: 93  LDWPVRAISFS--HDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT---------FTV 141
               V  + FS       + SG E   + +      K+   + +   +           +
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 142 AWHPKQYLLAYAC 154
           +W  +   L    
Sbjct: 122 SWDFEGRRLCVVG 134

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 34  FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-- 91
           F  K    L+     +      I        + FA    DA + +WD     C++ +   
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 92  RLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGKKVYDI 132
           +     + +     G   I S S D T+           Y++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTL---------NFYEL 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 4/116 (3%)

Query: 3   GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP 62
            Q       ++ R ++       D       F F+ H    +             IEF P
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK---DTNLAYPVNSIEFSP 261

Query: 63  TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTI 118
             K+      D ++S W+      I+ F + +     +  +    ++   + D T 
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 6e-09
 Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 8/108 (7%)

Query: 47  ILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL---DWPVRAIS 101
           I +A    ++ I     P+     + S D  ++++            +      P+   +
Sbjct: 6   IEQAPKDYISDIK--IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 102 FSHD-GALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQY 148
           F  +    I  G+    I    +        +    A   +    K  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 15/125 (12%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL---------------DW 95
                         + +A  S D  V++    +        +                 +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 96  PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD 155
           PV +I FS     + +   D  I   ++++ KK+ +         V       +L  A  
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312

Query: 156 DKYDR 160
           D   +
Sbjct: 313 DDTFK 317

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 9/90 (10%), Positives = 25/90 (27%), Gaps = 4/90 (4%)

Query: 38  EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV 97
           +         L++  +            Y+    +  ++  +D       R    +   +
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNL 317

Query: 98  RAISFSHDGALIASGSEDLTIDIAHVESGK 127
             +  S D   +    +D  I    +E  +
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 19/154 (12%), Positives = 34/154 (22%), Gaps = 6/154 (3%)

Query: 59  EFDPT-GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED-- 115
           +F P  G   A  S+     + D +    ++  +     +R +    D  +         
Sbjct: 9   DFSPLDGDLIAFVSRGQAF-IQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG 65

Query: 116 LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
             + I    +GK           F +           A D       D    K       
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 176 PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDR 209
                       +    A      H E      +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 9/95 (9%), Positives = 25/95 (26%), Gaps = 9/95 (9%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
                      P       G  +  ++ +D  +   I+           ++F   G  + 
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAANLDHTY-YCVAFDKKGDKLY 307

Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
            G     + + + ++ +KV           +    
Sbjct: 308 LGGTFNDLAVFNPDTLEKV-------KNIKLPGGD 335

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 2/88 (2%)

Query: 60  FDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSHDGA-LIASGSEDLT 117
                +Y  V +    + + D A  T  ++      +       + D        +    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 118 IDIAHVESGKKVYDICIQAATFTVAWHP 145
           I    +++ K  +   + +    V    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSM 91

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 45  QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ 91
           +     H   C+   FD  G    +G     +++++   L  ++  +
Sbjct: 286 KAANLDHTYYCVA--FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 34  FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
           +  K    L+       H     C++F+    +    S D  V LWD      IR    L
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTL 299

Query: 94  DW-----PVRAISFSHDGALIASGSEDLTIDI 120
           +       V  I  S+   + A GS + T + 
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 41  KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
           +L+   +LK H   V          G     GS D  + +W A    C+RT       V 
Sbjct: 5   ELKSPKVLKGHDDHVITC---LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 99  AISFSHD 105
           +     +
Sbjct: 62  SSQMRDN 68

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 7e-08
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 35  KFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD 94
           K  +       + L+ H      ++FD  G +   GS D  + +WD     CI T     
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217

Query: 95  WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC 154
                +    +  ++ SG+ D T+ I  +++G+ +  +           H          
Sbjct: 218 SLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP------NKHQSAVTCLQFN 269

Query: 155 DDKYDRKQDCGNLKVF 170
            +      D G +K++
Sbjct: 270 KNFVITSSDDGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 16/120 (13%), Positives = 43/120 (35%), Gaps = 11/120 (9%)

Query: 60  FDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV-RAISFSHDGALIASGSEDLTI 118
            +        G+ D+ V +WD     C++T Q  +           +   + + S+D T+
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

Query: 119 DIAHVESGKKVYDICI------QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGF 172
            +  +++G+ + ++            + +     + + A    +  +  +    L V  F
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK----LLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 79  WDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAA 137
           W   EL   +  +  D  V        G  I SGS+D T+ +    +GK +  +      
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 138 TFTVAWHPKQYLLAYACDDKYDRKQDC 164
            ++        +             + 
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAET 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 7e-09
 Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 8/126 (6%)

Query: 45  QNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL-DWPVRAIS 101
             +   H   +T +       GK       +  ++ WD +     R F  +    +  I 
Sbjct: 5   DQVRYGHNKAITALS--SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 102 FSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKY 158
            +  G L     +D    +    SG          + +    +A      +   AC    
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 159 DRKQDC 164
                 
Sbjct: 123 AIYSHG 128

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 1e-06
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAIS--FSHDGAL 108
           H     C+ + P     A GS D  V +W+  + +      +    + +++     +   
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 109 IASGSEDLTIDIAHVESGKKVYDI 132
           I S  +D  I         K +++
Sbjct: 283 IVSAGQDSNI---------KFWNV 297

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 9/101 (8%)

Query: 65  KYFAVGSKDALVSLWDAAELTCIRTFQRLDWP--VRAISFSHDGA-LIASGSEDLTIDIA 121
            Y    ++   + + D  ++   +     D          +  G    A+ ++  ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 122 HVESGKKVY------DICIQAATFTVAWHPKQYLLAYACDD 156
            + +G+ +             + F  A  P    LA     
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP 102

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
             +                     ++  +D  +   I+          +++ S DG+ + 
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSY-YSVNVSTDGSTVW 295

Query: 111 SGSEDLTIDIAHVESGKKVYDI 132
            G     +     E+ +K   +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 6/41 (14%), Positives = 12/41 (29%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ 91
            P +   +     G    +G     ++ +DA  L       
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 47  ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
            +  H               +   +    V + DA     +  F+ +   + +I+ S D 
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDE 311

Query: 107 A--LIASGSEDLTIDIAHVESGKKVYDI 132
              L A  + D T+ I   ESG+++  +
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSV 339

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 11/62 (17%), Positives = 24/62 (38%)

Query: 45  QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH 104
                 H +  I +  D     +A+ + D  + + DA     +R+  +L    + I+ + 
Sbjct: 294 AKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

Query: 105 DG 106
            G
Sbjct: 354 MG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 20/121 (16%)

Query: 62  PTGKYFAV-----GSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA------ 110
           P  +   V      +      + D      I        P      + DG+ IA      
Sbjct: 11  PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVF 68

Query: 111 ----SGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG 165
                G     +++    +     DI    A  F V  +P  ++ +   D K        
Sbjct: 69  SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP--WMTSLTPDGKTLLFYQFS 126

Query: 166 N 166
            
Sbjct: 127 P 127

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 19/103 (18%)

Query: 46  NILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR----------- 92
           N  KAH   +  +         +    S D  + +WD   L       +           
Sbjct: 8   NAGKAHDADIFSVS----ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 93  --LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC 133
             +D        + +  L+A+ S    +    +    +   + 
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 30  KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT 89
           +++       H  +      AH    + + F+ +G+       D  +  WD      I T
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326

Query: 90  FQ----RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD-------ICIQAAT 138
                  ++     ++    G  +A        D+  ++ G +          +C     
Sbjct: 327 LNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADLNESLCCVCLD 383

Query: 139 FTVAWH 144
            ++ W 
Sbjct: 384 RSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 13/168 (7%), Positives = 29/168 (17%), Gaps = 36/168 (21%)

Query: 26  DISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD-PTGKYFAVGSKDALVSLWDAAEL 84
           D      +    + +          H      IE D       A  S    +  +     
Sbjct: 40  DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99

Query: 85  TCIRTFQRLDWP----------VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKV 129
              +                    A+ +           + +     T  I         
Sbjct: 100 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159

Query: 130 YDICIQAATFT-------------------VAWHPKQYLLAYACDDKY 158
            +      + T                   V    +   +A   ++  
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGT 206

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 61  DPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI 120
           D    +         ++L D      ++              S  G  +     D  ID+
Sbjct: 29  DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDM 87

Query: 121 AHVESGK--KVYDICIQAATFTVAWHP 145
             + + +  KV +I I     +V    
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESSK 114

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 40  HKLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV 97
           H L+  +        V C         +    G +D  + +WD   L C R        V
Sbjct: 3   HSLQRIHCRSETSKGVYC----LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58

Query: 98  RAISFSH 104
             + +  
Sbjct: 59  LCLQYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 34  FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
           +       +  + +L  H      ++FD         S D  + +W+ +    +RT    
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS--ASGDRTIKVWNTSTCEFVRTLNGH 177

Query: 94  DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA 153
              +  + +     L+ SGS D TI +  +E G  +  +              + +++ A
Sbjct: 178 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 235

Query: 154 CDDK 157
            D K
Sbjct: 236 YDGK 239

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 11/83 (13%)

Query: 45  QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA---------AELTCIRTFQRLDW 95
             +        +        K    G+ D  + +WD          A   C+RT      
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268

Query: 96  PVRAISFSHDGALIASGSEDLTI 118
            V  + F  D   I S S D TI
Sbjct: 269 RVFRLQF--DEFQIVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 83  ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA 142
            L  I         V  + +  D   I SG  D TI I    + +    +     +    
Sbjct: 4   SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61

Query: 143 WHPKQYLLAYACDDKYDRKQDCGN 166
            + ++ ++  + D           
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTG 85

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 11/83 (13%)

Query: 51  HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-LTCIRTFQRLDWPVRAISFSHDGALI 109
            P      E +      A GS D  + ++     +  I+        V  + +      +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272

Query: 110 ASGSEDLTIDIAHVESGKKVYDI 132
            S   D  I         K +++
Sbjct: 273 VSSGADACI---------KRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 13/65 (20%)

Query: 47  ILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH 104
            +  H   +T +    +P       GS D  +  W ++ +    +       + ++  S 
Sbjct: 8   TISGHNKGITALT--VNP----LISGSYDGRIMEWSSSSMHQDHSNL-----IVSLDNSK 56

Query: 105 DGALI 109
                
Sbjct: 57  AQEYS 61

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 9/113 (7%)

Query: 34  FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
                 + + +   ++A P                V      VS+ D             
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 94  DWPVRAISFSHDGA-LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
             P   I+ + DG  +  + S   T+ +    +           AT  V  +P
Sbjct: 244 PDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT-------ATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 7/56 (12%)

Query: 57  CIEFDPTGKY-FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIAS 111
            I   P GK  +   S    VS+ D A  T   T      P  A      G  I S
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP-YAS-----GQFIGS 297

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 3/92 (3%)

Query: 56  ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
              ++D    +         ++L D +                    S  G  +     D
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRD 82

Query: 116 LTIDIAHVESGK--KVYDICIQAATFTVAWHP 145
             +++  +   +   V +I I +   ++    
Sbjct: 83  GKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 9/110 (8%)

Query: 58  IEFDPTGKYFAVGSKDALVSLWDAAELTC-----IRTFQRLDWPVRAISFSHDGALIASG 112
                +G+Y  V  +D  V++ D           I+          +     +     +G
Sbjct: 67  SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG 126

Query: 113 SEDLT----IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY 158
           +        +D   +E  K      +          P+   +  +     
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 15/118 (12%), Positives = 24/118 (20%), Gaps = 21/118 (17%)

Query: 60  FDPTGKYFAV----------GSKDALVSLWDAAELTCIRT--------FQRLDWPVRAIS 101
              +G  FA+          G +   V ++D      I          F         I 
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV-HIIG 130

Query: 102 FSHDGA-LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY 158
                A L+             V            A+ F +           +C    
Sbjct: 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFHIHPGAAATHYLGSCPASL 187

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 50  AHPVTCICIEFDPTGKY--FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
           ++      I     G    +A  +   ++ ++DAA      + +    P  ++S  ++
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQNE 367

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 8/97 (8%), Positives = 28/97 (28%), Gaps = 7/97 (7%)

Query: 67  FAVGSKDALVSLWDAAELTCIRTFQRLDWP--VRAISFSHDGA-LIASGSEDLTIDIAHV 123
           +    +   + +W+      +   Q +D P  V+ +  S D   L      +  +    +
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 124 ESGKKV----YDICIQAATFTVAWHPKQYLLAYACDD 156
                      +  +  +   ++   +   +     +
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.88
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.88
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.87
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.85
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.84
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.84
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.81
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.79
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.77
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.75
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.75
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.72
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.71
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.71
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.71
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.7
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.7
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.68
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.68
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.67
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.51
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.49
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.47
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.45
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.43
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.42
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.41
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.41
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.37
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.28
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.17
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.16
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.04
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.0
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.9
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.75
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.4
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.34
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.29
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.05
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.93
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.9
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.86
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.8
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.73
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.53
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.49
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.01
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.95
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.43
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.05
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.04
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.49
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.24
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.9
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.78
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.72
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.67
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.76
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.03
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.94
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.68
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.18
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.72
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	85.73
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	81.37

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=5.5e-24  Score=203.20  Aligned_cols=199  Identities=17%  Similarity=0.155  Sum_probs=162.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKY-FAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~-L~sgs~dg~I~iwd~~~   83 (432)
                      ..|.+++|+|++..+ ++++.+..   ..+.+|+..+++....+.+|...|++++|+|++.+ |++|+.|+.|++||+.+
T Consensus       103 ~~v~~v~~s~d~~~l-~~~~~~~~---~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~  178 (311)
T d1nr0a1         103 GPVKDISWDSESKRI-AAVGEGRE---RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  178 (311)
T ss_dssp             SCEEEEEECTTSCEE-EEEECCSS---CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             Ccccccccccccccc-cccccccc---ccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            467899999999877 45444322   23566777788899999999999999999999875 78899999999999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCcEEEEEEC
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--------IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--------~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      +.....+.+|..+|+++.|+|++.+|++|+.|+.|++||+.++..+..+.        |.+.|.+++|+|++.+|++|+.
T Consensus       179 ~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999998887763        5678999999999999999999


Q ss_pred             CCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         156 DKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      |+.        |++||+.++.++..+..+.-.......          ..+..   -.++.+..|..|++||.
T Consensus       259 Dg~--------v~iwd~~t~~~~~~l~~~~~~~~~~~~----------~~~~~---~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         259 DKT--------IKIWNVATLKVEKTIPVGTRIEDQQLG----------IIWTK---QALVSISANGFINFVNP  310 (311)
T ss_dssp             TSE--------EEEEETTTTEEEEEEECCSSGGGCEEE----------EEECS---SCEEEEETTCCEEEEET
T ss_pred             CCe--------EEEEECCCCcEEEEEECCCCccceEEE----------EEecC---CEEEEEECCCEEEEEeC
Confidence            999        777777788888777655321110000          01111   23788899999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.5e-23  Score=198.22  Aligned_cols=195  Identities=17%  Similarity=0.201  Sum_probs=160.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe----
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD----   80 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd----   80 (432)
                      +.|.+++|+|++.++ ++|+.|++     |.+||..+++.+..+.+|..+|.+++|+|++.++++|+.|+.+.+|+    
T Consensus        56 ~~I~~l~~s~~~~~l-~sgs~Dg~-----v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~  129 (340)
T d1tbga_          56 AKIYAMHWGTDSRLL-VSASQDGK-----LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTTE-----EEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred             CCEEEEEECCCCCEE-EEEECCCc-----eeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccc
Confidence            458999999999876 88888865     56777789999999999999999999999999998887776655554    


Q ss_pred             --------------------------------------------------------------------------------
Q psy9319          81 --------------------------------------------------------------------------------   80 (432)
Q Consensus        81 --------------------------------------------------------------------------------   80 (432)
                                                                                                      
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             CSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEE
Confidence                                                                                            


Q ss_pred             ---CCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEE
Q psy9319          81 ---AAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus        81 ---~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s  154 (432)
                         +.++.++..+.+|...|++++|+|++.+|++|+.|+.|++||+.....+..+.   +...|.+++|+|++.+|++|+
T Consensus       210 i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE
Confidence               44444555666788899999999999999999999999999999998887764   566799999999999999999


Q ss_pred             CCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeeccc
Q psy9319         155 DDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADH  227 (432)
Q Consensus       155 ~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d  227 (432)
                      .||.        |++||+.++.++..+.+|......           ....|.+..   +++++.|..||+||
T Consensus       290 ~dg~--------i~iwd~~~~~~~~~~~~H~~~V~~-----------l~~s~d~~~---l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 DDFN--------CNVWDALKADRAGVLAGHDNRVSC-----------LGVTDDGMA---VATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSC--------EEEEETTTCCEEEEECCCSSCEEE-----------EEECTTSSC---EEEEETTSCEEEEC
T ss_pred             CCCE--------EEEEECCCCcEEEEEcCCCCCEEE-----------EEEeCCCCE---EEEEccCCEEEEeC
Confidence            9999        777888888888888887532111           112345555   78899999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.3e-23  Score=203.02  Aligned_cols=210  Identities=16%  Similarity=0.132  Sum_probs=155.5

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcc--eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKL--EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD   80 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd   80 (432)
                      +.++|.|++|+|++..+ ++|+.|+.+.+     |+..++  .++..+.+|.++|.+++|+|++++|++|+.|++|+|||
T Consensus         6 ~~~pIt~~~~s~dg~~l-a~~~~~~~i~i-----w~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQI-AICPNNHEVHI-----YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEE-EEECSSSEEEE-----EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEECCCCCEE-EEEeCCCEEEE-----EECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            35789999999999877 66666665544     444444  46778899999999999999999999999999999999


Q ss_pred             CCCCee--EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-----ecCCceEEEEEccCCcEEEEE
Q psy9319          81 AAELTC--IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-----CIQAATFTVAWHPKQYLLAYA  153 (432)
Q Consensus        81 ~~~~~~--~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-----~~~~~V~~l~fspdg~~l~s~  153 (432)
                      +.++..  ...+.+|...|.+++|+|+++.|++|+.|++|++|++.........     .|...|.+++|+|++.+|++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            987654  4455678899999999999999999999999999998776543332     267789999999999999999


Q ss_pred             ECCCeEEEEeCCceE--------EeecC--CCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCccee
Q psy9319         154 CDDKYDRKQDCGNLK--------VFGFL--PEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRV  223 (432)
Q Consensus       154 s~d~~I~vwd~~~i~--------vwd~~--~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~l  223 (432)
                      +.|+.|++||...-.        .|+..  .+..+....+|...           .+.....|.+..   ++.+..|..+
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~s~~g~~---l~s~~~d~~i  225 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-----------VHGVCFSANGSR---VAWVSHDSTV  225 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-----------EEEEEECSSSSE---EEEEETTTEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCc-----------EEEEEeeccccc---ccccccCCcc
Confidence            999997777753211        11111  12222222222211           111222354444   6778889999


Q ss_pred             ecccchhHH
Q psy9319         224 RADHFNKKK  232 (432)
Q Consensus       224 R~~d~~~k~  232 (432)
                      ++||.....
T Consensus       226 ~iwd~~~~~  234 (371)
T d1k8kc_         226 CLADADKKM  234 (371)
T ss_dssp             EEEEGGGTT
T ss_pred             eEEeeeccc
Confidence            999987643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=4.5e-23  Score=196.78  Aligned_cols=207  Identities=11%  Similarity=0.081  Sum_probs=158.9

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEEccCCcCEEEEEEcCCCCEEEEEeCC--CeEEEE
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILKAHPVTCICIEFDPTGKYFAVGSKD--ALVSLW   79 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~sgs~d--g~I~iw   79 (432)
                      .+.|.+++|+|++.++ ++++.|++     +++|+..++..  ...+.+|.++|.+++|+|++.+|++++.+  ..+.||
T Consensus        58 ~~~v~~~~~sp~g~~l-atg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~  131 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYC-ASGDVHGN-----VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  131 (311)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTSE-----EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             CCCEEEEEEeCCCCeE-eccccCce-----EeeeeeeccccccccccccccCcccccccccccccccccccccccccccc
Confidence            4678999999999876 78887775     45666666554  35688999999999999999999998864  569999


Q ss_pred             eCCCCeeEEEEeeCCCCEEEEEEeeCCCE-EEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCC
Q psy9319          80 DAAELTCIRTFQRLDWPVRAISFSHDGAL-IASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDK  157 (432)
Q Consensus        80 d~~~~~~~~~~~~h~~~V~~i~~spdg~~-l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~  157 (432)
                      ++.++.....+.+|...|++++|+|++.+ |++|+.|+.|++||+++++....+. |..+|.++.|+|++.++++++.|+
T Consensus       132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence            99999999999999999999999999885 8889999999999999999888886 788999999999999999999999


Q ss_pred             eEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         158 YDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       158 ~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      .        +.+|++.++..+..+.........    +..........|.+..   ++.++.|..+++||+...
T Consensus       212 ~--------v~~~d~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~s~~~~~---l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         212 T--------IVLYNGVDGTKTGVFEDDSLKNVA----HSGSVFGLTWSPDGTK---IASASADKTIKIWNVATL  270 (311)
T ss_dssp             C--------EEEEETTTCCEEEECBCTTSSSCS----SSSCEEEEEECTTSSE---EEEEETTSEEEEEETTTT
T ss_pred             c--------cccccccccccccccccccccccc----ccccccccccCCCCCE---EEEEeCCCeEEEEECCCC
Confidence            9        555555555444433222110000    0000111122345544   788999999999998754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6e-22  Score=189.98  Aligned_cols=205  Identities=15%  Similarity=0.181  Sum_probs=165.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +.|.+++|+|++..+ ++++.|+.+..|++.   ..+......+.+|...+.+++|+|++.++++++.|+.|.+||+.++
T Consensus        98 ~~I~~v~~s~dg~~l-~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~  173 (337)
T d1gxra_          98 NYIRSCKLLPDGCTL-IVGGEASTLSIWDLA---APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ  173 (337)
T ss_dssp             SBEEEEEECTTSSEE-EEEESSSEEEEEECC---CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEEcCCCCEE-EEeeccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            458899999999876 777888766555443   1244567788899999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      .+.....+|...|.+++|+|++..+++|+.|+.|++||+.+++.+..+.+...|.+++|+|++.+|++++.|+.|++||+
T Consensus       174 ~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~  253 (337)
T d1gxra_         174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccc
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999999999986


Q ss_pred             Cc---------------------------------eEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCcccccc
Q psy9319         165 GN---------------------------------LKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRK  211 (432)
Q Consensus       165 ~~---------------------------------i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~  211 (432)
                      ..                                 |++||+.++..+..+....            ........|.++. 
T Consensus       254 ~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------------~v~~~~~s~d~~~-  320 (337)
T d1gxra_         254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS------------SVLSCDISVDDKY-  320 (337)
T ss_dssp             TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS------------CEEEEEECTTSCE-
T ss_pred             cccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCC------------CEEEEEEeCCCCE-
Confidence            42                                 5566666655554432111            0011112344444 


Q ss_pred             ccceeccCcceeecccc
Q psy9319         212 LGLLEKKKDYRVRADHF  228 (432)
Q Consensus       212 ~glLe~~~D~~lR~~d~  228 (432)
                        ++.++.|..||+||.
T Consensus       321 --l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         321 --IVTGSGDKKATVYEV  335 (337)
T ss_dssp             --EEEEETTSCEEEEEE
T ss_pred             --EEEEeCCCeEEEEEE
Confidence              788899999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.3e-22  Score=188.64  Aligned_cols=155  Identities=14%  Similarity=0.024  Sum_probs=131.1

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcce-----eeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLE-----EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLW   79 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~-----~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iw   79 (432)
                      +.|.+++|+|++.++ ++|+ |+.     |.+||..++.     ......+|.+.|.+++|+|+|++|++|+.|+.|++|
T Consensus        52 ~~V~~v~fs~~g~~l-atg~-dg~-----V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iw  124 (337)
T d1gxra_          52 EVVCAVTISNPTRHV-YTGG-KGC-----VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             SCCCEEEECSSSSEE-EEEC-BSE-----EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             CcEEEEEECCCCCEE-EEEE-CCE-----EEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccc
Confidence            568999999999877 6665 554     4556654432     223345799999999999999999999999999999


Q ss_pred             eCCC--CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECC
Q psy9319          80 DAAE--LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        80 d~~~--~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      |+..  +.....+..|...+.+++|+|++.++++++.|+.|.+||+.++.+..... |...|.+++|+|++..+++++.|
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9874  45567788899999999999999999999999999999999998877765 78899999999999999999999


Q ss_pred             CeEEEEeCCc
Q psy9319         157 KYDRKQDCGN  166 (432)
Q Consensus       157 ~~I~vwd~~~  166 (432)
                      +.|++||+..
T Consensus       205 ~~v~i~d~~~  214 (337)
T d1gxra_         205 NTVRSWDLRE  214 (337)
T ss_dssp             SEEEEEETTT
T ss_pred             cccccccccc
Confidence            9999988753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.3e-21  Score=180.03  Aligned_cols=155  Identities=26%  Similarity=0.288  Sum_probs=142.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++.++ ++|+.|+++     ++||..+++++.++.+|...|.+++|+|++.++++++.++.+.+|+....
T Consensus        18 ~~I~~l~~sp~~~~l-~s~s~Dg~i-----~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVM-VSASEDATI-----KVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             SCEEEEEECSSSSEE-EEEESSSCE-----EEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             CCeEEEEEcCCCCEE-EEEeCCCeE-----EEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence            458999999999876 788888765     56677799999999999999999999999999999999999999999988


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEe
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQD  163 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd  163 (432)
                      .....+.+|...+.++.|+|++..+++++.|+.+.+||+.++..+..+. +...+.+++|+|++.+|++++.|+.|++|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~  171 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  171 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence            8888888999999999999999999999999999999999999988886 788899999999999999999999988888


Q ss_pred             CC
Q psy9319         164 CG  165 (432)
Q Consensus       164 ~~  165 (432)
                      ..
T Consensus       172 ~~  173 (317)
T d1vyhc1         172 VA  173 (317)
T ss_dssp             TT
T ss_pred             ec
Confidence            63

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5e-21  Score=185.33  Aligned_cols=211  Identities=18%  Similarity=0.221  Sum_probs=170.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++..+ ++|+.|+.     +.+|+...++.+..+.+|...|.+++|++++..+++|+.++.|++||..+.
T Consensus       122 ~~V~~l~~s~~~~~l-~s~~~dg~-----v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         122 LYIRSVCFSPDGKFL-ATGAEDRL-----IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             CBEEEEEECTTSSEE-EEEETTSC-----EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEECCCCCcc-eecccccc-----cccccccccccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            457899999999876 77777775     466777889999999999999999999999999999999999999999998


Q ss_pred             eeEEEEeeCCCCEEEEEEee-CCCEEEEEeCCCeEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCcEEEEEEC
Q psy9319          85 TCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYDIC--------IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~sp-dg~~l~sgs~dg~V~vwd~~~~~~~~~~~--------~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ........+. ...++.++| ++.+|++|+.|+.|++||+.++..+..+.        |...|.+++|+|++.+|++|+.
T Consensus       196 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         196 QCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             EEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            8877776554 455555555 89999999999999999999998876652        5678999999999999999999


Q ss_pred             CCeEEEEeCC----------------------------------------------ceEEeecCCCceeeeecCCCchhh
Q psy9319         156 DKYDRKQDCG----------------------------------------------NLKVFGFLPEPIKKRKRGGTMSSW  189 (432)
Q Consensus       156 d~~I~vwd~~----------------------------------------------~i~vwd~~~~~~~~~~~g~~mss~  189 (432)
                      |+.|++||+.                                              .|++||+.++.++..+.+|.....
T Consensus       275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~  354 (388)
T d1erja_         275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI  354 (388)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence            9999999852                                              378899999888888888764322


Q ss_pred             hHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         190 VKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       190 ~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ..+.     .+.....|.+..   +++++.|..||+|++.+
T Consensus       355 ~~~~-----~~~~~~spd~~~---l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         355 SVAV-----ANGSSLGPEYNV---FATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEEE-----CSSCTTCTTCEE---EEEEETTSEEEEEEEEE
T ss_pred             EEEE-----ecCcccCCCCCE---EEEEeCCCEEEEEeeee
Confidence            1111     111122344444   78899999999999853

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.4e-21  Score=182.93  Aligned_cols=152  Identities=20%  Similarity=0.238  Sum_probs=133.2

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .+....+.|....+ +++..|+     .+.+||..+++++..+.+|.++|++++|+|++.+|++|+.|+.|++||+....
T Consensus       186 ~~~~~~~~~~~~~~-~~~~~d~-----~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~  259 (340)
T d1tbga_         186 DVMSLSLAPDTRLF-VSGACDA-----SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             CEEEEEECTTSSEE-EEEETTT-----EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             eEeeecccccccee-EEeecCc-----eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence            34556666777665 6666555     46778888999999999999999999999999999999999999999999888


Q ss_pred             eEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          86 CIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        86 ~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      ....+.  .+...|.+++|+|++.+|++|+.||.|++||+.+++++..+. |.++|.+++|+|++.+|++|+.||.|++|
T Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            776664  456789999999999999999999999999999999999887 88999999999999999999999996666


Q ss_pred             e
Q psy9319         163 D  163 (432)
Q Consensus       163 d  163 (432)
                      |
T Consensus       340 d  340 (340)
T d1tbga_         340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6e-21  Score=177.17  Aligned_cols=195  Identities=18%  Similarity=0.188  Sum_probs=165.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..+.++.++|++..+ ++++.|+     .+.+|+..++..+..+.+|...+.+++|+|++.+|++|+.|+.|++|++.++
T Consensus       102 ~~~~~~~~~~~~~~~-~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~  175 (317)
T d1vyhc1         102 HNVSSVSIMPNGDHI-VSASRDK-----TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK  175 (317)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTS-----EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccceeeeccCCCceE-EeeccCc-----ceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence            445778889998876 6666665     4567788899999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCC--------------------CEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDG--------------------ALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAW  143 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg--------------------~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~f  143 (432)
                      .....+.+|...+.+++|+|++                    .++++|+.|+.|++||+.++.++..+. |...|.+++|
T Consensus       176 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (317)
T d1vyhc1         176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF  255 (317)
T ss_dssp             CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence            9999999999999999998763                    578999999999999999999998886 8889999999


Q ss_pred             ccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCccee
Q psy9319         144 HPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRV  223 (432)
Q Consensus       144 spdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~l  223 (432)
                      +|++.+|++|+.||.        |++||+.++.++..+.+|......           ....|.+..   +++++.|.+|
T Consensus       256 ~~~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~~h~~~V~~-----------~~~s~~~~~---l~s~s~Dg~i  313 (317)
T d1vyhc1         256 HSGGKFILSCADDKT--------LRVWDYKNKRCMKTLNAHEHFVTS-----------LDFHKTAPY---VVTGSVDQTV  313 (317)
T ss_dssp             CSSSSCEEEEETTTE--------EEEECCTTSCCCEEEECCSSCEEE-----------EEECSSSSC---EEEEETTSEE
T ss_pred             CCCCCEEEEEECCCe--------EEEEECCCCcEEEEEcCCCCCEEE-----------EEEcCCCCE---EEEEeCCCeE
Confidence            999999999999999        777788888888888877532111           112345544   8899999999


Q ss_pred             eccc
Q psy9319         224 RADH  227 (432)
Q Consensus       224 R~~d  227 (432)
                      ++||
T Consensus       314 ~iWd  317 (317)
T d1vyhc1         314 KVWE  317 (317)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.1e-20  Score=185.27  Aligned_cols=158  Identities=13%  Similarity=0.136  Sum_probs=129.3

Q ss_pred             eeeeeeecCCCceeEEEEeecC----------cc---eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319          19 YQSSVLTDISPKQLDFKFKEHH----------KL---EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus        19 l~~s~s~D~~~~~~~i~~~d~~----------~~---~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      ++++++.|+++..|++......          ..   ........+...+.+++|+|+| +|++|+.|++|+|||+.++.
T Consensus       138 ~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~  216 (393)
T d1sq9a_         138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR  216 (393)
T ss_dssp             EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred             EEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc
Confidence            4577888999888887532100          00   1111223456678999999998 89999999999999999988


Q ss_pred             eEEEE------eeCCCCEEEEEEeeCCCEEEEEeCCC---eEEEEeCCCCcEEEEE--------------ecCCceEEEE
Q psy9319          86 CIRTF------QRLDWPVRAISFSHDGALIASGSEDL---TIDIAHVESGKKVYDI--------------CIQAATFTVA  142 (432)
Q Consensus        86 ~~~~~------~~h~~~V~~i~~spdg~~l~sgs~dg---~V~vwd~~~~~~~~~~--------------~~~~~V~~l~  142 (432)
                      ++..+      .+|..+|++++|+|+|.+|++|+.|+   .|++||+.++.++..+              .|...|++++
T Consensus       217 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~  296 (393)
T d1sq9a_         217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS  296 (393)
T ss_dssp             EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred             cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeec
Confidence            76654      46889999999999999999999886   4999999999888776              3778899999


Q ss_pred             EccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         143 WHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       143 fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      |+|++++|++|+.|++        |++||+.+|.++..+.||.
T Consensus       297 fspd~~~l~S~s~D~~--------v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         297 FNDSGETLCSAGWDGK--------LRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             ECSSSSEEEEEETTSE--------EEEEETTTTEEEEEEECCG
T ss_pred             cCCCCCeeEEECCCCE--------EEEEECCCCCEEEEECCcC
Confidence            9999999999999999        8888999999999998885

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.5e-20  Score=178.19  Aligned_cols=208  Identities=10%  Similarity=0.027  Sum_probs=159.8

Q ss_pred             CcccccccCCCC-cceeeeeeecCCCceeEEEEeecC---cceeeEEEccCCcCEEEEEEcCCCCEEEEEeC--CCeEEE
Q psy9319           5 NFIPLLGLNPRP-SLYQSSVLTDISPKQLDFKFKEHH---KLEEQNILKAHPVTCICIEFDPTGKYFAVGSK--DALVSL   78 (432)
Q Consensus         5 n~I~~l~~~p~~-~~l~~s~s~D~~~~~~~i~~~d~~---~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~--dg~I~i   78 (432)
                      ..|.+++|+|.+ ..++++++.|+++++|++......   .+.....+..|.++|.+++|+|+|.+|++++.  ++.+.+
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence            458899999854 356689999999888887643211   11223346678999999999999999987764  678999


Q ss_pred             EeCCCCeeEEEEeeCCCCEEEEEEeeCCCE-EEEEeCCCeEEEEeCCCCcEEEEEe----cCCceEEEEEccC-CcEEEE
Q psy9319          79 WDAAELTCIRTFQRLDWPVRAISFSHDGAL-IASGSEDLTIDIAHVESGKKVYDIC----IQAATFTVAWHPK-QYLLAY  152 (432)
Q Consensus        79 wd~~~~~~~~~~~~h~~~V~~i~~spdg~~-l~sgs~dg~V~vwd~~~~~~~~~~~----~~~~V~~l~fspd-g~~l~s  152 (432)
                      |+..++.++..+.+|...|.+++|+|++.+ +++++.|+.|++||+.+++....+.    +...|.+++|+|+ +.++++
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s  223 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT  223 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             EeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccc
Confidence            999999999999999999999999998764 6789999999999998887766653    5677999999996 689999


Q ss_pred             EECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhH
Q psy9319         153 ACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK  231 (432)
Q Consensus       153 ~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k  231 (432)
                      ++.|+.        |++||+.++..+..+.+|..........        ...|.+..   ++.++.|..+|+||....
T Consensus       224 ~~~d~~--------i~iwd~~~~~~~~~l~~~~~~v~~~~~s--------~~~~dg~~---l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         224 VGSDRK--------ISCFDGKSGEFLKYIEDDQEPVQGGIFA--------LSWLDSQK---FATVGADATIRVWDVTTS  283 (325)
T ss_dssp             EETTCC--------EEEEETTTCCEEEECCBTTBCCCSCEEE--------EEESSSSE---EEEEETTSEEEEEETTTT
T ss_pred             cccccc--------eeeeeeccccccccccccccccccceee--------eeccCCCE---EEEEeCCCeEEEEECCCC
Confidence            999999        7777777888888887765322111000        00123333   788999999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.8e-20  Score=176.89  Aligned_cols=201  Identities=11%  Similarity=0.003  Sum_probs=152.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKY-FAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~-L~sgs~dg~I~iwd~~~   83 (432)
                      +.|.++.|+|++..++++ +.+.   ...+.+|+..+++++..+.+|...|++++|+|++.. +++++.|+.|++||...
T Consensus       116 ~~v~~v~~s~~~~~l~~~-~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  191 (325)
T d1pgua1         116 GPISDISWDFEGRRLCVV-GEGR---DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP  191 (325)
T ss_dssp             SCEEEEEECTTSSEEEEE-ECCS---SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT
T ss_pred             CcEEEEEECCCCCcccee-eccc---cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccc
Confidence            457889999999887444 3322   123566677788999999999999999999998765 67899999999999988


Q ss_pred             CeeEEEEe---eCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEc---cCCcEEEEEEC
Q psy9319          84 LTCIRTFQ---RLDWPVRAISFSHD-GALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWH---PKQYLLAYACD  155 (432)
Q Consensus        84 ~~~~~~~~---~h~~~V~~i~~spd-g~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fs---pdg~~l~s~s~  155 (432)
                      +.....+.   .|...|++++|+|+ +.+|++|+.|+.|++||+.+++++..+. |..++..+.|+   |+|.+|++++.
T Consensus       192 ~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~  271 (325)
T d1pgua1         192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA  271 (325)
T ss_dssp             BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET
T ss_pred             cccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeC
Confidence            87766554   46778999999996 6899999999999999999999998886 55555544444   68899999999


Q ss_pred             CCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         156 DKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       156 d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      |+.        |++||+.+++++..+..+........+.       ... +....   +++++.|..|++||.
T Consensus       272 D~~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~---l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         272 DAT--------IRVWDVTTSKCVQKWTLDKQQLGNQQVG-------VVA-TGNGR---IISLSLDGTLNFYEL  325 (325)
T ss_dssp             TSE--------EEEEETTTTEEEEEEECCTTCGGGCEEE-------EEE-EETTE---EEEEETTSCEEEEET
T ss_pred             CCe--------EEEEECCCCCEEEEEEecCCcccCeEEE-------EEE-CCCCE---EEEEECCCEEEEEEC
Confidence            999        7778888888887776554322111100       000 11112   788999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.6e-19  Score=174.53  Aligned_cols=208  Identities=15%  Similarity=0.219  Sum_probs=152.0

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc------------------cCCcCEEEEEEcCCCCE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK------------------AHPVTCICIEFDPTGKY   66 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~------------------~h~~~V~~l~~spdg~~   66 (432)
                      +.|.+++|+|++.++ ++|+ |++     +.+|+..+++.+..+.                  +|...|++++|+|+|++
T Consensus        63 ~~V~~l~fs~dg~~l-asg~-d~~-----i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          63 SVVCCVKFSNDGEYL-ATGC-NKT-----TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             SCCCEEEECTTSSEE-EEEC-BSC-----EEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CcEEEEEECCCCCEE-EEEe-CCe-----EEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            568999999999876 6665 655     4666666776665554                  46677999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEEEEEcc-
Q psy9319          67 FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP-  145 (432)
Q Consensus        67 L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fsp-  145 (432)
                      |++|+.||.|++||...+..+..+.+|...|.+++|++++..+++|+.++.+++||+.+........+.....++.|+| 
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  215 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  215 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             ceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999998888777666666666665 


Q ss_pred             CCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeec
Q psy9319         146 KQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRA  225 (432)
Q Consensus       146 dg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~  225 (432)
                      ++.+|++|+.|+.        +.+|++.++..+..+.......    .............|.+..   ++.+..|..+++
T Consensus       216 ~~~~l~~~~~d~~--------i~i~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~~---l~s~~~d~~i~i  280 (388)
T d1erja_         216 DGKYIAAGSLDRA--------VRVWDSETGFLVERLDSENESG----TGHKDSVYSVVFTRDGQS---VVSGSLDRSVKL  280 (388)
T ss_dssp             TCCEEEEEETTSC--------EEEEETTTCCEEEEEC----------CCCSSCEEEEEECTTSSE---EEEEETTSEEEE
T ss_pred             CCCeEEEEcCCCe--------EEEeecccCccceeeccccccc----cCCCCCEEEEEECCCCCE---EEEEECCCcEEE
Confidence            7899999999999        5555555554444332111000    000001111122344444   788899999999


Q ss_pred             ccchhHHHH
Q psy9319         226 DHFNKKKKT  234 (432)
Q Consensus       226 ~d~~~k~~~  234 (432)
                      ||.......
T Consensus       281 wd~~~~~~~  289 (388)
T d1erja_         281 WNLQNANNK  289 (388)
T ss_dssp             EEC------
T ss_pred             EeccCCccc
Confidence            998765433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=5.7e-20  Score=178.67  Aligned_cols=169  Identities=14%  Similarity=0.139  Sum_probs=136.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ..|.+++|+|++.++ ++|+.|+++..|++.   .....+...+.+|...|++++|+|+++.|++|+.|++|++|++...
T Consensus        52 ~~V~~l~fsp~~~~l-~s~s~D~~i~vWd~~---~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          52 GQVTGVDWAPDSNRI-VTCGTDRNAYVWTLK---GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             SCEEEEEEETTTTEE-EEEETTSCEEEEEEE---TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             CCEEEEEECCCCCEE-EEEECCCeEEEEeec---ccccccccccccccccccccccccccccceeecccCcceeeeeecc
Confidence            568999999999876 788889887777664   1223455667889999999999999999999999999999988754


Q ss_pred             ee----EEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCC------------------cEEEEEe-cCCceEEE
Q psy9319          85 TC----IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG------------------KKVYDIC-IQAATFTV  141 (432)
Q Consensus        85 ~~----~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~------------------~~~~~~~-~~~~V~~l  141 (432)
                      ..    ......|...|.+++|+|++.+|++|+.|++|++||+...                  ..+.... |...|.++
T Consensus       128 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  207 (371)
T d1k8kc_         128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  207 (371)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             cccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE
Confidence            43    2334568899999999999999999999999999998643                  2333333 77889999


Q ss_pred             EEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCC
Q psy9319         142 AWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGT  185 (432)
Q Consensus       142 ~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~  185 (432)
                      +|+|+|.+|++++.|+.        +.+||+.++..+..+.+|.
T Consensus       208 ~~s~~g~~l~s~~~d~~--------i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         208 CFSANGSRVAWVSHDST--------VCLADADKKMAVATLASET  243 (371)
T ss_dssp             EECSSSSEEEEEETTTE--------EEEEEGGGTTEEEEEECSS
T ss_pred             EeecccccccccccCCc--------ceEEeeecccceeeeeccc
Confidence            99999999999999999        6777777777777776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.84  E-value=3.2e-20  Score=173.64  Aligned_cols=195  Identities=14%  Similarity=0.085  Sum_probs=133.5

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC--
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDA--   81 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~--   81 (432)
                      ..|.+++|+|++..+ ++|+.|+++     ++||..++++...+. +|...|++++|+|+|.+ ++++.|+.+++|+.  
T Consensus        13 ~~V~~l~~s~dg~~l-~s~s~Dg~v-----~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~   85 (299)
T d1nr0a2          13 KAITALSSSADGKTL-FSADAEGHI-----NSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGG   85 (299)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCE-----EEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSS
T ss_pred             CCcEEEEECCCCCEE-EEEcCCCeE-----EEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCC
Confidence            458999999999876 788888875     445555666666653 56677777777776653 33444666666653  


Q ss_pred             --------------------------------------------------------------------------------
Q psy9319          82 --------------------------------------------------------------------------------   81 (432)
Q Consensus        82 --------------------------------------------------------------------------------   81 (432)
                                                                                                      
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~  165 (299)
T d1nr0a2          86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL  165 (299)
T ss_dssp             SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                            


Q ss_pred             CCCeeEE-EEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe----cCCceEEEEEccCCcEEEEEECC
Q psy9319          82 AELTCIR-TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC----IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus        82 ~~~~~~~-~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~----~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      .++.... ....|...|++++|+|++.+|++++.|+.|++||+.++..+....    |...|.+++|+|++.+|++|+.|
T Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d  245 (299)
T d1nr0a2         166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD  245 (299)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCC
Confidence            2222111 123467789999999999999999999999999998887654432    67889999999999999999999


Q ss_pred             CeEEEEeCCceEEeecCCCceee--eecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccc
Q psy9319         157 KYDRKQDCGNLKVFGFLPEPIKK--RKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       157 ~~I~vwd~~~i~vwd~~~~~~~~--~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                      +.        |++||+.++....  ...+|..+.....           ..+.+..   +++++.|..||+||.
T Consensus       246 g~--------i~iwd~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~---l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         246 NS--------VIVWNMNKPSDHPIIIKGAHAMSSVNSV-----------IWLNETT---IVSAGQDSNIKFWNV  297 (299)
T ss_dssp             SC--------EEEEETTCTTSCCEEETTSSTTSCEEEE-----------EEEETTE---EEEEETTSCEEEEEC
T ss_pred             CE--------EEEEECCCCCcceEEEecCCCCCcEEEE-----------EECCCCE---EEEEeCCCEEEEEec
Confidence            99        5555555443222  1222222111100           0122333   788999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=5.5e-19  Score=172.93  Aligned_cols=142  Identities=14%  Similarity=0.170  Sum_probs=115.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE------EEccCCcCEEEEEEcCCCCEEEEEeCCCe---
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN------ILKAHPVTCICIEFDPTGKYFAVGSKDAL---   75 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~------~l~~h~~~V~~l~~spdg~~L~sgs~dg~---   75 (432)
                      .++.+++|+|++  ++++|+.|+++     ++||..+++++.      .+.+|..+|.+++|+|+|.+|++|+.|++   
T Consensus       185 ~~~~~v~~s~dg--~lasgs~Dg~i-----~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~  257 (393)
T d1sq9a_         185 QFATSVDISERG--LIATGFNNGTV-----QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC  257 (393)
T ss_dssp             CCCCEEEECTTS--EEEEECTTSEE-----EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred             CcEEEEEECCCC--EEEEEeCCCcE-----EEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcce
Confidence            346789999987  44788888765     566666766654      45679999999999999999999999874   


Q ss_pred             EEEEeCCCCeeEEEEe-------------eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceE--
Q psy9319          76 VSLWDAAELTCIRTFQ-------------RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATF--  139 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~-------------~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~--  139 (432)
                      |++||+.++.++..+.             +|.+.|++++|+|++++|+|||.|++|++||+.+|+++..+. |...|.  
T Consensus       258 i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE  337 (393)
T ss_dssp             EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred             eeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCC
Confidence            8999999998877764             799999999999999999999999999999999999999986 666554  


Q ss_pred             --EEEEccCCcEEEEE
Q psy9319         140 --TVAWHPKQYLLAYA  153 (432)
Q Consensus       140 --~l~fspdg~~l~s~  153 (432)
                        .++|+|++..++++
T Consensus       338 ~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         338 EDILAVDEHGDSLAEP  353 (393)
T ss_dssp             GGCCCBCTTSCBCSSC
T ss_pred             ccEEEECCCCCEEEEc
Confidence              46777777665533

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=5.3e-19  Score=165.17  Aligned_cols=151  Identities=14%  Similarity=0.140  Sum_probs=118.0

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE-EEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN-ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~-~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      +.+++++|++..+ ++++.|+.+..|++     .++.... ....|...|++++|+|++.+|++++.|+.|++||+.++.
T Consensus       139 ~~~~~~s~~~~~l-~~g~~dg~i~~~d~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  212 (299)
T d1nr0a2         139 SSCVALSNDKQFV-AVGGQDSKVHVYKL-----SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  212 (299)
T ss_dssp             EEEEEECTTSCEE-EEEETTSEEEEEEE-----ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             ccccccccccccc-cccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4678899988866 67777766555544     4554433 345789999999999999999999999999999998765


Q ss_pred             eE---EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe---c-CCceEEEEEccCCcEEEEEECCCe
Q psy9319          86 CI---RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC---I-QAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        86 ~~---~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~---~-~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ..   ..+.+|...|++++|+|++.+|++|+.||.|++||+.++.....+.   + ...|.++.| +++.+|++|+.|+.
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~  291 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSN  291 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCE
Confidence            43   3456789999999999999999999999999999998875433332   3 345666655 56789999999999


Q ss_pred             EEEEeC
Q psy9319         159 DRKQDC  164 (432)
Q Consensus       159 I~vwd~  164 (432)
                      |++||+
T Consensus       292 i~iWdl  297 (299)
T d1nr0a2         292 IKFWNV  297 (299)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            666665

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=5.8e-18  Score=157.20  Aligned_cols=149  Identities=17%  Similarity=0.176  Sum_probs=116.0

Q ss_pred             cccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEE
Q psy9319          10 LGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIR   88 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~   88 (432)
                      ..++|++..+++++..+..     +.+|+.........+. .|.+.+++++|+|+|.+|++|+.||.|++||+.++....
T Consensus       124 ~~~~~~~~~~~v~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  198 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNT-----IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT  198 (287)
T ss_dssp             EEEEECSSEEEEEETTTSC-----EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eeeeccCcceeeeccccce-----eeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccc
Confidence            3456667666555444433     4555555555544444 477899999999999999999999999999999887654


Q ss_pred             -EEeeCCCCEEEEEEeeC----------CCEEEEEeCCCeEEEEeCCCC-cEEEEEe-cCCceEEEEEccCCcEEEEEEC
Q psy9319          89 -TFQRLDWPVRAISFSHD----------GALIASGSEDLTIDIAHVESG-KKVYDIC-IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        89 -~~~~h~~~V~~i~~spd----------g~~l~sgs~dg~V~vwd~~~~-~~~~~~~-~~~~V~~l~fspdg~~l~s~s~  155 (432)
                       .+.+|...|.+++|+|.          +.+|++|+.|++|++||+..+ ..+..+. |...|.+++|+|++ .|++++.
T Consensus       199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~  277 (287)
T d1pgua2         199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA  277 (287)
T ss_dssp             CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEET
T ss_pred             ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEEC
Confidence             35789999999999874          468999999999999999774 4555543 88999999999986 5889999


Q ss_pred             CCeEEEEeC
Q psy9319         156 DKYDRKQDC  164 (432)
Q Consensus       156 d~~I~vwd~  164 (432)
                      |+.|++|++
T Consensus       278 D~~v~iW~i  286 (287)
T d1pgua2         278 DACIKRWNV  286 (287)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999666653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.3e-17  Score=151.44  Aligned_cols=174  Identities=15%  Similarity=0.197  Sum_probs=128.4

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS  113 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs  113 (432)
                      +.+|+......+..+.+|...+.++  ++++.+|++|+.||.|++||+..+.++..+.+|...+.+++++  +.+|++|+
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s  234 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN  234 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE
T ss_pred             EEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEc
Confidence            4556666777788888888777665  4568899999999999999999999999999999999888765  46999999


Q ss_pred             CCCeEEEEeCCCCcEEEEEe----cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhh
Q psy9319         114 EDLTIDIAHVESGKKVYDIC----IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSW  189 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~~----~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~  189 (432)
                      .|+.|++||+...+....+.    |...+.++.|  ++.++++|+.||.        |++||+.+|+++..+........
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~--------i~iwd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGT--------VKLWDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSE--------EEEEETTTCCEEEEEEECTTGGG
T ss_pred             CCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCE--------EEEEECCCCCEEEEEecccCCCC
Confidence            99999999999998887774    4455666655  4679999999999        77778888888776643322111


Q ss_pred             hHHhhhcccccccccCccccccccceeccC----cceeecccchh
Q psy9319         190 VKAAKVNQKTHRERHQPEDRRKLGLLEKKK----DYRVRADHFNK  230 (432)
Q Consensus       190 ~~a~~~~~~~h~er~qp~~r~~~glLe~~~----D~~lR~~d~~~  230 (432)
                      ..      ........|.+..   +..+..    +..|++|||+.
T Consensus       305 ~~------~v~~v~~s~~~~~---la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         305 GG------VVWRIRASNTKLV---CAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TC------EEEEEEECSSEEE---EEEECSSSSSCCEEEEEECCC
T ss_pred             CC------CEEEEEECCCCCE---EEEEeCCCCCeeEEEEEeCCC
Confidence            11      1111223344433   444444    45699999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.4e-17  Score=155.23  Aligned_cols=118  Identities=15%  Similarity=0.244  Sum_probs=101.8

Q ss_pred             eEEEccCCcCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          45 QNILKAHPVTC-ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        45 ~~~l~~h~~~V-~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                      ..+|+||...| +|++  ++|++|++|+.||+|+|||+.+++++.++.+|.++|++++|+|+ .+|++|+.|++|++|++
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            45789998875 5655  46889999999999999999999999999999999999999986 58999999999999999


Q ss_pred             CCCcEEEEEec---CCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         124 ESGKKVYDICI---QAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       124 ~~~~~~~~~~~---~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                      ....+......   ...+..+.+++++.++++++.|+.|++||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~  126 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  126 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECC
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEcc
Confidence            99888776652   2334567788999999999999999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.1e-16  Score=148.67  Aligned_cols=197  Identities=16%  Similarity=0.143  Sum_probs=131.5

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC   86 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~   86 (432)
                      |.|+.+  ++.++ ++|+.|++     |++||..+++++.++.+|.++|++++|+|+ .+|++|+.|++|++|+.....+
T Consensus        16 itc~~~--~~~~l-~tgs~Dg~-----i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~   86 (355)
T d1nexb2          16 ITCLQF--EDNYV-ITGADDKM-----IRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC   86 (355)
T ss_dssp             EEEEEE--ETTEE-EEEETTTE-----EEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEE
T ss_pred             EEEEEE--CCCEE-EEEeCCCe-----EEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccc
Confidence            355554  55554 88888875     567778899999999999999999999985 5899999999999999998877


Q ss_pred             EEEEeeCCC--CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe------------------------cCCceEE
Q psy9319          87 IRTFQRLDW--PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC------------------------IQAATFT  140 (432)
Q Consensus        87 ~~~~~~h~~--~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~------------------------~~~~V~~  140 (432)
                      ......+..  .+..+.+++++.++++++.|+.|++||+.++..+....                        +...+  
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--  164 (355)
T d1nexb2          87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--  164 (355)
T ss_dssp             EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--
T ss_pred             ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--
Confidence            665554333  34455667778888888888888888876544322211                        11111  


Q ss_pred             EEEccCCcEEEEEECCCeEEEEeCC----------------------------------ceEEeecCCCceeeeecCCCc
Q psy9319         141 VAWHPKQYLLAYACDDKYDRKQDCG----------------------------------NLKVFGFLPEPIKKRKRGGTM  186 (432)
Q Consensus       141 l~fspdg~~l~s~s~d~~I~vwd~~----------------------------------~i~vwd~~~~~~~~~~~g~~m  186 (432)
                      ..+.+++.++++++.|+.|++||+.                                  .+++|++.++..+..+.+|..
T Consensus       165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~  244 (355)
T d1nexb2         165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA  244 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccc
Confidence            2334455566666666666666542                                  267788888877777777653


Q ss_pred             hhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       187 ss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ....  +         .  +...   .++.+..|..+++||.+.
T Consensus       245 ~v~~--~---------~--~~~~---~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         245 LVGL--L---------R--LSDK---FLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             CCCE--E---------E--ECSS---EEEEECTTSEEEEEETTT
T ss_pred             cccc--c---------c--cccc---eeeeeecccccccccccc
Confidence            2111  0         0  1112   278888999999998764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-15  Score=139.52  Aligned_cols=187  Identities=17%  Similarity=0.221  Sum_probs=135.0

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT   85 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~   85 (432)
                      .|.|+.  +++..+ ++++.|+++     ++||..+++++.++.+|.++|++++|  ++++|++|+.|+.|++|++..+.
T Consensus        17 ~V~c~~--~d~~~l-~sgs~Dg~i-----~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          17 GVYCLQ--YDDQKI-VSGLRDNTI-----KIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CEEEEE--CCSSEE-EEEESSSCE-----EEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             CEEEEE--EcCCEE-EEEeCCCeE-----EEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            455654  566655 888888876     55666789999999999999999876  57899999999999999987543


Q ss_pred             eEEE-------------------------------------------EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          86 CIRT-------------------------------------------FQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        86 ~~~~-------------------------------------------~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      ....                                           +..|...|.++.+.  ...+++++.|+.|++||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d  164 (293)
T d1p22a2          87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWN  164 (293)
T ss_dssp             EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeec
Confidence            2221                                           12344455555443  45788899999999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCCCchhhhHHhhhcccccc
Q psy9319         123 VESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHR  201 (432)
Q Consensus       123 ~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~  201 (432)
                      +.+++.+..+. +...|..+.++  +..+++++.|+.        +++||+.++..+....++......           
T Consensus       165 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~~~~~~v~~-----------  223 (293)
T d1p22a2         165 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT--------IRLWDIECGACLRVLEGHEELVRC-----------  223 (293)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC--------EEEEETTTCCEEEEECCCSSCEEE-----------
T ss_pred             CCCCcEEEEEcccccccccccCC--CCeEEEecCCCE--------EEEEecccceeeeeecccceeeee-----------
Confidence            99999988876 66677777665  678999999999        666666666666666554321100           


Q ss_pred             cccCccccccccceeccCcceeecccchh
Q psy9319         202 ERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       202 er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                        ..+...   -++.+..|..+++||...
T Consensus       224 --~~~~~~---~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         224 --IRFDNK---RIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             --EECCSS---EEEEEETTSCEEEEEHHH
T ss_pred             --ccccce---EEEEEcCCCEEEEEECCC
Confidence              011122   278889999999998754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.71  E-value=6.6e-17  Score=153.60  Aligned_cols=162  Identities=12%  Similarity=0.089  Sum_probs=125.4

Q ss_pred             cccccCC-CCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCC
Q psy9319           8 PLLGLNP-RPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA--LVSLWDAAEL   84 (432)
Q Consensus         8 ~~l~~~p-~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg--~I~iwd~~~~   84 (432)
                      ..-.||| +|.++ ++++.      ..+.+|+...+...+ + +|...|.+++|||||+.|++++.+.  .|++||..++
T Consensus         6 ~~~~fSP~dG~~~-a~~~~------g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~   76 (360)
T d1k32a3           6 FAEDFSPLDGDLI-AFVSR------GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG   76 (360)
T ss_dssp             GEEEEEECGGGCE-EEEET------TEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             hcccccCCCCCEE-EEEEC------CeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            4456999 78776 55432      368888987776654 3 7999999999999999998776553  7999999877


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEECCCeEEEE-
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKYDRKQ-  162 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s~d~~I~vw-  162 (432)
                      .. ..+..|...|.+++|+|+|++|++++.++.+++|++.++.+...+. +...+.+++|+|+|.+|++++.+....++ 
T Consensus        77 ~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          77 KA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             CE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             cE-EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence            64 5677899999999999999999999999999999999999888776 77788999999999999976544321111 


Q ss_pred             -eCCceEEeecCCCceee
Q psy9319         163 -DCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       163 -d~~~i~vwd~~~~~~~~  179 (432)
                       ....+.+|++.++....
T Consensus       156 ~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             CCEEEEEEEETTTTEEEE
T ss_pred             ccccceeeeccccCceee
Confidence             11225667776665443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-16  Score=147.02  Aligned_cols=138  Identities=16%  Similarity=0.243  Sum_probs=113.8

Q ss_pred             ccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEE
Q psy9319          11 GLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF   90 (432)
Q Consensus        11 ~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~   90 (432)
                      .+++++..+ ++++.|+.     +++||...++++..+.+|...+.++++++  .+|++|+.|+.|++||+........+
T Consensus       182 ~~~~~~~~l-~s~~~dg~-----i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~  253 (342)
T d2ovrb2         182 SLQFDGIHV-VSGSLDTS-----IRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTL  253 (342)
T ss_dssp             EEEECSSEE-EEEETTSC-----EEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cccCCCCEE-EEEeCCCe-----EEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccc
Confidence            344455544 77777765     46677788999999999999999887764  69999999999999999988887777


Q ss_pred             ee---CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe------cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          91 QR---LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC------IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        91 ~~---h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~------~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ..   |...+.++.+  ++.++++|+.||+|++||+.+++.+..+.      |...|.+++|+|++.++++|+.||+
T Consensus       254 ~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         254 QGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             CSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             cccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence            65   4456666655  55799999999999999999999988773      5567999999999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=4.8e-17  Score=151.77  Aligned_cols=158  Identities=11%  Similarity=-0.022  Sum_probs=118.2

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT-GKYFAVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~sgs~dg~I~iwd~~~   83 (432)
                      +.|.+++|+|++.+| ++++.|+++++|++...  .....+....+|.++|++++|+|+ +.+|++|+.|+.|++|++..
T Consensus        12 d~I~~l~fsp~~~~L-~s~s~Dg~v~iwd~~~~--~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          12 DYISDIKIIPSKSLL-LITSWDGSLTVYKFDIQ--AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             SCEEEEEEEGGGTEE-EEEETTSEEEEEEEETT--TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCEEEEEEeCCCCEE-EEEECCCeEEEEEccCC--CcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            458999999999876 88889988777766421  111223334479999999999986 56899999999999999998


Q ss_pred             CeeEEEEeeCCC-CEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE----e---cCCceEEEEEccCCcEEEEEEC
Q psy9319          84 LTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI----C---IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        84 ~~~~~~~~~h~~-~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~----~---~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      +........+.. ......+.+++..+++++.++++.+||++++......    .   .......+.+.+.+..+++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
T d1yfqa_          89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN  168 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEES
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecC
Confidence            777666655444 3455566778899999999999999998754332222    1   2223456777888999999999


Q ss_pred             CCeEEEEeCC
Q psy9319         156 DKYDRKQDCG  165 (432)
Q Consensus       156 d~~I~vwd~~  165 (432)
                      |+.|++||+.
T Consensus       169 d~~i~~~~~~  178 (342)
T d1yfqa_         169 NSQVQWFRLP  178 (342)
T ss_dssp             TTEEEEEESS
T ss_pred             CCcEEEEecc
Confidence            9999999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=1.5e-16  Score=151.17  Aligned_cols=159  Identities=11%  Similarity=0.013  Sum_probs=134.5

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      ....|.++.|+|++..+++++..++    ..+.+||..++. +..+..|.+.|.+++|+|+|++|++++.++.+.+|++.
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCc-EEEeeCCCceEEeeeecccccccceecccccccccccc
Confidence            3466899999999998855544332    347888887664 45678899999999999999999999999999999999


Q ss_pred             CCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe----------CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEE
Q psy9319          83 ELTCIRTFQRLDWPVRAISFSHDGALIASGS----------EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAY  152 (432)
Q Consensus        83 ~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs----------~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s  152 (432)
                      ++.+...+..|...+.+++|+|+|++|+.++          .++.+++||+.+++......+...+..++|+|+|+.|++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  195 (360)
T d1k32a3         116 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  195 (360)
T ss_dssp             TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             ccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEE
Confidence            9999989999999999999999999998654          345699999999887776678888999999999999999


Q ss_pred             EECCCeEEEEeCCc
Q psy9319         153 ACDDKYDRKQDCGN  166 (432)
Q Consensus       153 ~s~d~~I~vwd~~~  166 (432)
                      ++.++.+.+||...
T Consensus       196 ~s~~~~~~~~d~~~  209 (360)
T d1k32a3         196 LSYRSLDPSPDRVV  209 (360)
T ss_dssp             EESCCCCCEECSSS
T ss_pred             EeCCCceEcccccc
Confidence            99999977777543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-15  Score=139.36  Aligned_cols=167  Identities=16%  Similarity=0.229  Sum_probs=121.6

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      +.+.....|...|+|++  +||++|++|+.||+|+|||+.+++++.++.+|.+.|++++|  ++++|++|+.|+.|++|+
T Consensus         6 ~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             EEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccc
Confidence            44555678889999875  57999999999999999999999999999999999999876  678999999999999999


Q ss_pred             CCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC-----------------------------------ce
Q psy9319         123 VESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG-----------------------------------NL  167 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~-----------------------------------~i  167 (432)
                      +..+............ ...+.+....+++++.++.+.+||..                                   .+
T Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i  160 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEA-VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  160 (293)
T ss_dssp             SSSCCEEEEECCCCSC-EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             cccccccccccccccc-cccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCce
Confidence            9988776665433322 23334445566777777777777642                                   15


Q ss_pred             EEeecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchh
Q psy9319         168 KVFGFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNK  230 (432)
Q Consensus       168 ~vwd~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~  230 (432)
                      ++|++.++..+..+.++......             ..+..   ..++.+..|..+++||...
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~v~~-------------~~~~~---~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRGIAC-------------LQYRD---RLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEE-------------EEEET---TEEEEEETTSCEEEEETTT
T ss_pred             eeecCCCCcEEEEEccccccccc-------------ccCCC---CeEEEecCCCEEEEEeccc
Confidence            66666666666665554322110             00111   2378889999999998864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=8.8e-16  Score=142.16  Aligned_cols=196  Identities=15%  Similarity=0.107  Sum_probs=135.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEE-----------------------------eecCcceeeEEEccCCcCE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKF-----------------------------KEHHKLEEQNILKAHPVTC   55 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~-----------------------------~d~~~~~~~~~l~~h~~~V   55 (432)
                      +.|.++.++++..  +++++.|.+++.|++..                             |+..++..+..+..+ .+ 
T Consensus        47 ~~V~~~~~~~~~~--~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  122 (287)
T d1pgua2          47 NLIVSLDNSKAQE--YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SP-  122 (287)
T ss_dssp             SCEEEEECCSTTC--CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SC-
T ss_pred             CCEEEEEecCCCe--EEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-ce-
Confidence            3566777776543  36777888777776542                             233333333333322 22 


Q ss_pred             EEEEEcCCCCEEEEEeCCC-eEEEEeCCCCeeEEEEe-eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-
Q psy9319          56 ICIEFDPTGKYFAVGSKDA-LVSLWDAAELTCIRTFQ-RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-  132 (432)
Q Consensus        56 ~~l~~spdg~~L~sgs~dg-~I~iwd~~~~~~~~~~~-~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-  132 (432)
                       +.+++|++..+++++.++ .|++|++........+. .|...+++++|+|++.+|++|+.||.|++||+.++...... 
T Consensus       123 -~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  201 (287)
T d1pgua2         123 -GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW  201 (287)
T ss_dssp             -EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred             -eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc
Confidence             345677788888887775 79999998665554443 47788999999999999999999999999999998876543 


Q ss_pred             -ecCCceEEEEEccC----------CcEEEEEECCCeEEEEeCCceEEeecCC-CceeeeecCCCchhhhHHhhhccccc
Q psy9319         133 -CIQAATFTVAWHPK----------QYLLAYACDDKYDRKQDCGNLKVFGFLP-EPIKKRKRGGTMSSWVKAAKVNQKTH  200 (432)
Q Consensus       133 -~~~~~V~~l~fspd----------g~~l~s~s~d~~I~vwd~~~i~vwd~~~-~~~~~~~~g~~mss~~~a~~~~~~~h  200 (432)
                       .|...|.+++|+|.          +.++++|+.|+.        +++|++.. +..+..+.+|......          
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~--------i~iw~~~~~~~~~~~~~~h~~~V~~----------  263 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN--------IFIYSVKRPMKIIKALNAHKDGVNN----------  263 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSC--------EEEEESSCTTCCEEETTSSTTCEEE----------
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCe--------EEEEECCCCCeEEEEeCCCCCCeEE----------
Confidence             37888999999875          468999999999        55556544 4455555566422111          


Q ss_pred             ccccCccccccccceeccCcceeecccc
Q psy9319         201 RERHQPEDRRKLGLLEKKKDYRVRADHF  228 (432)
Q Consensus       201 ~er~qp~~r~~~glLe~~~D~~lR~~d~  228 (432)
                       ....|.+ .   +++.+.|..+|+|+.
T Consensus       264 -v~~~~~~-~---l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         264 -LLWETPS-T---LVSSGADACIKRWNV  286 (287)
T ss_dssp             -EEEEETT-E---EEEEETTSCEEEEEE
T ss_pred             -EEECCCC-E---EEEEECCCeEEEEEE
Confidence             1111322 2   788999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.6e-16  Score=146.71  Aligned_cols=122  Identities=13%  Similarity=0.006  Sum_probs=99.9

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee---EEEEeeCCCCEEEEEEeeC-CCEEEEEeCCCeE
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTC---IRTFQRLDWPVRAISFSHD-GALIASGSEDLTI  118 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~V~~i~~spd-g~~l~sgs~dg~V  118 (432)
                      +.+..+++|...|++++|+|++++|++|+.||+|+|||+.++..   +....+|..+|.+++|+|+ +.+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            56677889999999999999999999999999999999876543   2333469999999999996 5589999999999


Q ss_pred             EEEeCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         119 DIAHVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       119 ~vwd~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ++|++..+.......  +........+.+++..+++++.++.+++||+
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~  129 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeec
Confidence            999999887777665  3333455667778899999999999555543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=1.5e-14  Score=142.71  Aligned_cols=83  Identities=8%  Similarity=0.034  Sum_probs=59.8

Q ss_pred             CEEEEEEeeCCCEEEE-------EeCCCeEEEEeCCCCcEEEEE----------ecCCceEEEEEccCCcEEEEEE----
Q psy9319          96 PVRAISFSHDGALIAS-------GSEDLTIDIAHVESGKKVYDI----------CIQAATFTVAWHPKQYLLAYAC----  154 (432)
Q Consensus        96 ~V~~i~~spdg~~l~s-------gs~dg~V~vwd~~~~~~~~~~----------~~~~~V~~l~fspdg~~l~s~s----  154 (432)
                      .+..++|+||+.+|++       ++.|++|++||+.++.....+          .+...|.+++|||||++++.++    
T Consensus       305 ~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~  384 (426)
T d1hzua2         305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK  384 (426)
T ss_dssp             CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT
T ss_pred             ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCC
Confidence            4667888999998884       445788999999998766554          1345588999999998775442    


Q ss_pred             -CCCeEEEEeCCceEEeecCCCcee
Q psy9319         155 -DDKYDRKQDCGNLKVFGFLPEPIK  178 (432)
Q Consensus       155 -~d~~I~vwd~~~i~vwd~~~~~~~  178 (432)
                       .++.|+|||..+.++|+.-++..+
T Consensus       385 ~~~~~i~v~D~~T~k~~~~i~~~~~  409 (426)
T d1hzua2         385 NDSSALVVVDDKTLKLKAVVKDPRL  409 (426)
T ss_dssp             TSCCEEEEEETTTTEEEEEECCTTC
T ss_pred             CCCCeEEEEECCCCeEEEEECCCCc
Confidence             467777777777776665554443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=2.8e-13  Score=134.24  Aligned_cols=156  Identities=11%  Similarity=-0.020  Sum_probs=119.4

Q ss_pred             ceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeE--EEE---ee
Q psy9319          18 LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI--RTF---QR   92 (432)
Q Consensus        18 ~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~--~~~---~~   92 (432)
                      +++++.+.|+     .+.+||..+++.+..+..|. .+..++|||||+++++++.|++|.+||+.++...  ..+   .+
T Consensus        33 ~~~v~~~d~g-----~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          33 LFSVTLRDAG-----QIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEEEETTTT-----EEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EEEEEEcCCC-----EEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence            4446766665     46788889999999998874 6899999999999999999999999999887642  222   24


Q ss_pred             CCCCEEEEEEeeCCCEE-EEEeCCCeEEEEeCCCCcEEEEEe------------cCCceEEEEEccCCcEEE-EEECCCe
Q psy9319          93 LDWPVRAISFSHDGALI-ASGSEDLTIDIAHVESGKKVYDIC------------IQAATFTVAWHPKQYLLA-YACDDKY  158 (432)
Q Consensus        93 h~~~V~~i~~spdg~~l-~sgs~dg~V~vwd~~~~~~~~~~~------------~~~~V~~l~fspdg~~l~-s~s~d~~  158 (432)
                      |.+.+.++.|||||++| ++++.+++|.+||..+++++..+.            .......+.++|+|..++ +...++.
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            55667777788999976 678889999999999999887663            234466789999997665 4556788


Q ss_pred             EEEEeCC---ceEEeecCCCceee
Q psy9319         159 DRKQDCG---NLKVFGFLPEPIKK  179 (432)
Q Consensus       159 I~vwd~~---~i~vwd~~~~~~~~  179 (432)
                      |.+||..   ...++.+..+....
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~  210 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLH  210 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEE
T ss_pred             EEEEEccCCCcceEEEEcccCccc
Confidence            8888764   34567766655433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.47  E-value=8.9e-12  Score=114.47  Aligned_cols=152  Identities=13%  Similarity=0.055  Sum_probs=121.6

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iwd~~~   83 (432)
                      .....++|+|++..++++++.+.     .|.+||..+++.+..+..|.. +..++|++++..++ ++..++.+.+|+..+
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~-----~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSN-----DVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGT-----EEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCC-----EEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeeccccc
Confidence            44577899999998767765554     567888899999999988765 57899999998655 556677899999999


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEE-EeCCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECC-CeEEE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIAS-GSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD-KYDRK  161 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~s-gs~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d-~~I~v  161 (432)
                      +.....+. +...+.++.|+|++..++. ++.++.+.+|+..++..+..+.....+..+.|+|++..+++++.+ +.+.+
T Consensus       106 ~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (301)
T d1l0qa2         106 NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV  184 (301)
T ss_dssp             TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccc
Confidence            98887776 4456789999999997764 456889999999999998888877788889999998888777765 44445


Q ss_pred             Ee
Q psy9319         162 QD  163 (432)
Q Consensus       162 wd  163 (432)
                      |+
T Consensus       185 ~~  186 (301)
T d1l0qa2         185 ID  186 (301)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=2.1e-12  Score=120.49  Aligned_cols=161  Identities=11%  Similarity=0.043  Sum_probs=112.7

Q ss_pred             cccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCc-----CEEEEEEcCCCCEEEEEe---------
Q psy9319           6 FIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPV-----TCICIEFDPTGKYFAVGS---------   71 (432)
Q Consensus         6 ~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~-----~V~~l~~spdg~~L~sgs---------   71 (432)
                      .+..++|+|++..++++++.++     .+.+||..+++.+..+..+..     .+..++|+|++.++++++         
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~-----~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSE-----SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTT-----EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CccEEEECCCCCEEEEEECCCC-----eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            3578899999988766665444     567888889999888876543     344789999999987765         


Q ss_pred             ---CCCeEEEEeCCCCeeEEEEeeC-------------------------------------------------------
Q psy9319          72 ---KDALVSLWDAAELTCIRTFQRL-------------------------------------------------------   93 (432)
Q Consensus        72 ---~dg~I~iwd~~~~~~~~~~~~h-------------------------------------------------------   93 (432)
                         .+..+.+||..++.....+..+                                                       
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceee
Confidence               3456777776655444333211                                                       


Q ss_pred             --------------------------------------------------CCCEEEEEEeeCCCEEEEEeCCCeEEEEeC
Q psy9319          94 --------------------------------------------------DWPVRAISFSHDGALIASGSEDLTIDIAHV  123 (432)
Q Consensus        94 --------------------------------------------------~~~V~~i~~spdg~~l~sgs~dg~V~vwd~  123 (432)
                                                                        ...+.++.++|++.+++.+  ++.|++||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~  267 (337)
T d1pbyb_         190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEEC
Confidence                                                              1122233344444444333  356788888


Q ss_pred             CCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         124 ESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       124 ~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      .+++.+..+.+...+.+++|+|||++|++++.++.        |.+||..+++.+..+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~--------i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         268 EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD--------LAAYDAETLEKKGQV  317 (337)
T ss_dssp             TTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSE--------EEEEETTTCCEEEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCc--------EEEEECCCCcEEEEE
Confidence            88888888888888999999999999999999999        666777766666554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.43  E-value=8.8e-12  Score=114.48  Aligned_cols=163  Identities=14%  Similarity=0.055  Sum_probs=126.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC-CeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD-ALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d-g~I~iwd~~~   83 (432)
                      ....++.++|++..+++++..+.     .+.+|+..++.....+..+ ..+.+++++|++..+++++.+ +.+.+|+...
T Consensus       116 ~~~~~~~~~~dg~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (301)
T d1l0qa2         116 KSPLGLALSPDGKKLYVTNNGDK-----TVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTT-----EEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccceEEEeecCCCeeeeeecccc-----ceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccc
Confidence            34567889999988766655443     4567788888888887765 446889999999888777665 6677888887


Q ss_pred             CeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEE-EEEECCCeE
Q psy9319          84 LTCIRTFQRLDWPVRAISFSHDGALIASGSE---DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLL-AYACDDKYD  159 (432)
Q Consensus        84 ~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~---dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l-~s~s~d~~I  159 (432)
                      ......+. +...+..++|++++..++.++.   ++.|.+||+.+++.+..+.....+.+++|+|||++| ++++.++. 
T Consensus       190 ~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~-  267 (301)
T d1l0qa2         190 NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNT-  267 (301)
T ss_dssp             TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTE-
T ss_pred             eeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCe-
Confidence            77666655 4456788999999998876643   468999999999999888877789999999999976 56667888 


Q ss_pred             EEEeCCceEEeecCCCceeeeec
Q psy9319         160 RKQDCGNLKVFGFLPEPIKKRKR  182 (432)
Q Consensus       160 ~vwd~~~i~vwd~~~~~~~~~~~  182 (432)
                             |.+||+.+++++..+.
T Consensus       268 -------i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         268 -------VSVIDTATNTITATMA  283 (301)
T ss_dssp             -------EEEEETTTTEEEEEEE
T ss_pred             -------EEEEECCCCeEEEEEe
Confidence                   7777777777766654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=2.4e-12  Score=120.02  Aligned_cols=150  Identities=13%  Similarity=0.064  Sum_probs=118.5

Q ss_pred             eeeeeeecCCCceeEEEEeecCcceeeEEEccC--CcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCeeEEEEeeCCC
Q psy9319          19 YQSSVLTDISPKQLDFKFKEHHKLEEQNILKAH--PVTCICIEFDPTGKYF-AVGSKDALVSLWDAAELTCIRTFQRLDW   95 (432)
Q Consensus        19 l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h--~~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~~~~~~~~~~~h~~   95 (432)
                      ++++++.|.     .+.+||..+++.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..
T Consensus         3 ~~vt~~~d~-----~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           3 YILAPARPD-----KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEETTT-----EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             EEEEEcCCC-----EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC
Confidence            346666655     5577888899999888653  4567899999999987 5667899999999999999888876543


Q ss_pred             -----CEEEEEEeeCCCEEEEEe------------CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe
Q psy9319          96 -----PVRAISFSHDGALIASGS------------EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        96 -----~V~~i~~spdg~~l~sgs------------~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                           .+..++|+|++.++++++            .++.+.+||..++.....+.....+..++|+|+|.++++++.+  
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--
Confidence                 345789999999998776            3568999999999999998888888999999999999988654  


Q ss_pred             EEEEeCCceEEeecCCCceeeeecC
Q psy9319         159 DRKQDCGNLKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       159 I~vwd~~~i~vwd~~~~~~~~~~~g  183 (432)
                              +.+||..++.....+..
T Consensus       156 --------~~~~d~~~~~~~~~~~~  172 (337)
T d1pbyb_         156 --------LHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             --------EEEEETTTTEEEEEECS
T ss_pred             --------cceeeeecCcEEEEeec
Confidence                    45566666666555443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.41  E-value=7.7e-13  Score=130.17  Aligned_cols=132  Identities=8%  Similarity=0.011  Sum_probs=100.0

Q ss_pred             ceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEE--E---ee
Q psy9319          18 LYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT--F---QR   92 (432)
Q Consensus        18 ~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~--~---~~   92 (432)
                      +++++.+.|+     .+.+||..+++.+.++..|. .+..++|||||++|++++.|++|++||+.+++....  +   .+
T Consensus        33 ~~~V~~~~dg-----~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~  106 (426)
T d1hzua2          33 LFSVTLRDAG-----QIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE  106 (426)
T ss_dssp             EEEEEETTTT-----EEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred             EEEEEEcCCC-----EEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC
Confidence            3446665554     56778888999999999875 589999999999999999999999999998875433  2   24


Q ss_pred             CCCCEEEEEEeeCCCEEEEE-eCCCeEEEEeCCCCcEEEEEe-c-----------CCceEEEEEccCCcEEEEEEC
Q psy9319          93 LDWPVRAISFSHDGALIASG-SEDLTIDIAHVESGKKVYDIC-I-----------QAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus        93 h~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~~~~~~~~~~-~-----------~~~V~~l~fspdg~~l~s~s~  155 (432)
                      |.+.+.+++|+|||++++++ ..++++.+||..++.++..+. +           ......+.+++++..++....
T Consensus       107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence            56667788888999987655 588999999999998887664 2           223445666666665555443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=7.1e-13  Score=131.25  Aligned_cols=158  Identities=11%  Similarity=-0.056  Sum_probs=117.4

Q ss_pred             CCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceee--EEE---ccCCcCEEEEEEcCCCCEE-EEEeCCCeE
Q psy9319           3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQ--NIL---KAHPVTCICIEFDPTGKYF-AVGSKDALV   76 (432)
Q Consensus         3 g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~--~~l---~~h~~~V~~l~~spdg~~L-~sgs~dg~I   76 (432)
                      ....+..++|+|++..+ ++++.|+     .+.+||..+++..  ..+   .+|.+.+.+.+|||||++| ++++.+++|
T Consensus        60 ~g~~~~~v~fSpDG~~l-~~~s~dg-----~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          60 TGYAVHISRLSASGRYL-FVIGRDG-----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             CSSCEEEEEECTTSCEE-EEEETTS-----EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             CCCCeeEEEECCCCCEE-EEEcCCC-----CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence            33567889999999988 5556565     4566776666532  222   3566677777889999976 678889999


Q ss_pred             EEEeCCCCeeEEEEeeC-----------CCCEEEEEEeeCCCEEE-EEeCCCeEEEEeCCCCcEEE--EEecCCceEEEE
Q psy9319          77 SLWDAAELTCIRTFQRL-----------DWPVRAISFSHDGALIA-SGSEDLTIDIAHVESGKKVY--DICIQAATFTVA  142 (432)
Q Consensus        77 ~iwd~~~~~~~~~~~~h-----------~~~V~~i~~spdg~~l~-sgs~dg~V~vwd~~~~~~~~--~~~~~~~V~~l~  142 (432)
                      .+||..++.++..+..|           .+....+.++|+|..++ +.+.++.|.+||..+++...  .+.+...+..++
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~  213 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  213 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence            99999999988777543           34567889999998765 55678999999999887544  455667789999


Q ss_pred             EccCCcEEEEEECC-CeEEEEeCCc
Q psy9319         143 WHPKQYLLAYACDD-KYDRKQDCGN  166 (432)
Q Consensus       143 fspdg~~l~s~s~d-~~I~vwd~~~  166 (432)
                      |+|+|+++++++.+ +.+.++|...
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ECCCCCEEEEeccccceEEEeeccc
Confidence            99999988877754 4555555543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.37  E-value=8.6e-12  Score=116.64  Aligned_cols=73  Identities=4%  Similarity=-0.153  Sum_probs=57.3

Q ss_pred             cccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCeeE
Q psy9319          10 LGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGKYF-AVGSKDALVSLWDAAELTCI   87 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~~~~~~   87 (432)
                      +++++++.++ ++++.|.     .+.+||..+++.+.++. .|...+.+++|+|||+++ ++++.++.|.+||+.++..+
T Consensus         2 ~a~~~~~~~l-~~~~~~~-----~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYM-IVTNYPN-----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEE-EEEETTT-----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEE-EEEcCCC-----EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            4788988877 6665554     57888999999999887 456667899999999987 55667899999999876544


Q ss_pred             E
Q psy9319          88 R   88 (432)
Q Consensus        88 ~   88 (432)
                      .
T Consensus        76 ~   76 (346)
T d1jmxb_          76 F   76 (346)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.28  E-value=2.3e-10  Score=108.81  Aligned_cols=80  Identities=9%  Similarity=-0.054  Sum_probs=59.4

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------CCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------KDA   74 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------~dg   74 (432)
                      ..+..++++|++..++++.. ........+.+||..+++.+..+..+..+  .++|||||++|++++          .++
T Consensus        21 ~p~~~~a~spdg~~~~~~~~-~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~   97 (373)
T d2madh_          21 GPTNDEAPGADGRRSYINLP-AHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CCccccccCCCCCEEEEEcc-cccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccce
Confidence            44678889999998755422 12223345777889999999999877654  689999999998875          357


Q ss_pred             eEEEEeCCCCeeE
Q psy9319          75 LVSLWDAAELTCI   87 (432)
Q Consensus        75 ~I~iwd~~~~~~~   87 (432)
                      .|.+||+.+++.+
T Consensus        98 ~v~v~D~~t~~~~  110 (373)
T d2madh_          98 YVEVFDPVTFLPI  110 (373)
T ss_pred             EEEEEECCCCcEE
Confidence            8999999876654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.17  E-value=6e-11  Score=110.71  Aligned_cols=99  Identities=10%  Similarity=0.066  Sum_probs=83.4

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe-eCCCCEEEEEEeeCCCEEE-EEeCCCeEEEEeCCCCcEEEEEecC
Q psy9319          58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSHDGALIA-SGSEDLTIDIAHVESGKKVYDICIQ  135 (432)
Q Consensus        58 l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~i~~spdg~~l~-sgs~dg~V~vwd~~~~~~~~~~~~~  135 (432)
                      ++|++++++|++++.+++|.+||+.+++.+.++. .|...+.+++|+|||++++ +++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4689999999999999999999999999998886 4566788999999999875 5557899999999999988877522


Q ss_pred             -------CceEEEEEccCCcEEEEEECC
Q psy9319         136 -------AATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       136 -------~~V~~l~fspdg~~l~s~s~d  156 (432)
                             ..+..++|+|||.++++++.+
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecC
Confidence                   235678999999998887643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.7e-10  Score=107.40  Aligned_cols=140  Identities=15%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             eeeeeecCCCceeEEEEeecCcceeeE--EEccCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCeeEEEEe---eC
Q psy9319          20 QSSVLTDISPKQLDFKFKEHHKLEEQN--ILKAHPVTCICIEFDPTGKYFAVG-SKDALVSLWDAAELTCIRTFQ---RL   93 (432)
Q Consensus        20 ~~s~s~D~~~~~~~i~~~d~~~~~~~~--~l~~h~~~V~~l~~spdg~~L~sg-s~dg~I~iwd~~~~~~~~~~~---~h   93 (432)
                      +++++.|.+++.|++     .+...+.  ....|.+.+.+++|||||++|+++ ..|+.|.+|++........+.   .+
T Consensus         7 ~v~~~~~~~I~v~~~-----~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           7 YIASPESQQIHVWNL-----NHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEGGGTEEEEEEE-----CTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEECCCCCcEEEEEE-----cCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            466666765555544     3332222  223577889999999999998555 458999999987654333322   34


Q ss_pred             CCCEEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEECC-CeEEEEeC
Q psy9319          94 DWPVRAISFSHDGALIASGSE-DLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDD-KYDRKQDC  164 (432)
Q Consensus        94 ~~~V~~i~~spdg~~l~sgs~-dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d-~~I~vwd~  164 (432)
                      ...+..++|+|||++|++++. ++.|.+|+...........   +...+.++.|+|+++++++++.+ ..|.+|+.
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            456778999999999998884 7789999987766544432   56678899999999988887744 45555554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=5.4e-10  Score=105.16  Aligned_cols=82  Identities=11%  Similarity=-0.015  Sum_probs=56.3

Q ss_pred             ccccccCCCCcceeeeeeecCCC----ceeEEEEeecCcceeeEEEccCCc-------CEEEEEEcCCCCEEEEEe--CC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISP----KQLDFKFKEHHKLEEQNILKAHPV-------TCICIEFDPTGKYFAVGS--KD   73 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~----~~~~i~~~d~~~~~~~~~l~~h~~-------~V~~l~~spdg~~L~sgs--~d   73 (432)
                      +..++|+|++..++++...+...    ....+.+||..+++.+..+..+..       ....++|+|+|..++.++  .+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            34678999999886654432211    245688999999988887764432       234578999999887664  45


Q ss_pred             CeEEEEeCCCCeeEE
Q psy9319          74 ALVSLWDAAELTCIR   88 (432)
Q Consensus        74 g~I~iwd~~~~~~~~   88 (432)
                      ..+.+|+..++..+.
T Consensus       129 ~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKR  143 (355)
T ss_dssp             CEEEEEETTTTEEEE
T ss_pred             ceeeeeecCCCcEee
Confidence            678888887765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=3.8e-09  Score=99.20  Aligned_cols=122  Identities=11%  Similarity=0.025  Sum_probs=91.2

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------CCCeEE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------KDALVS   77 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------~dg~I~   77 (432)
                      ...+.+|++..++++..... ...-.+.+||..+++.+.++..+..+  .++|||||++|++++          .|+.|.
T Consensus         5 ~~~a~spdg~~~~v~~~~~~-~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHF-AAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGG-CSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccC-CCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            34467899988755532222 23346788999999999999876555  689999999887643          478999


Q ss_pred             EEeCCCCeeEEEEeeCCC-------CEEEEEEeeCCCEEEEEe--CCCeEEEEeCCCCcEEEEE
Q psy9319          78 LWDAAELTCIRTFQRLDW-------PVRAISFSHDGALIASGS--EDLTIDIAHVESGKKVYDI  132 (432)
Q Consensus        78 iwd~~~~~~~~~~~~h~~-------~V~~i~~spdg~~l~sgs--~dg~V~vwd~~~~~~~~~~  132 (432)
                      +||+.++..+..+..+..       ....++|+|++.+++.++  .+..+.+||..++..+..+
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  145 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence            999999998887765432       235688999999888775  4578999999988776554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=2e-09  Score=102.72  Aligned_cols=168  Identities=5%  Similarity=-0.118  Sum_probs=113.9

Q ss_pred             cccccCCCCcceeeeeeec-C---CCceeEEEEeecCcceeeEEEccCCc-------CEEEEEEcCCCCEEEEEe-CCCe
Q psy9319           8 PLLGLNPRPSLYQSSVLTD-I---SPKQLDFKFKEHHKLEEQNILKAHPV-------TCICIEFDPTGKYFAVGS-KDAL   75 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D-~---~~~~~~i~~~d~~~~~~~~~l~~h~~-------~V~~l~~spdg~~L~sgs-~dg~   75 (432)
                      ..+.|+|++..+.++.... .   ......+.+||..+++.+..+..+..       ....++|||||++|++++ .++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            4578999998775543221 1   12356689999999999888765432       123689999999988775 5789


Q ss_pred             EEEEeCCCCeeEEEEeeCCC------------------------------------------------------------
Q psy9319          76 VSLWDAAELTCIRTFQRLDW------------------------------------------------------------   95 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~~------------------------------------------------------------   95 (432)
                      +.+||+.+++.+..+..+..                                                            
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             EEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence            99999877654433211000                                                            


Q ss_pred             -------------------------------------CEEEEEEeeCCCEEEEEeCC---------CeEEEEeCCCCcEE
Q psy9319          96 -------------------------------------PVRAISFSHDGALIASGSED---------LTIDIAHVESGKKV  129 (432)
Q Consensus        96 -------------------------------------~V~~i~~spdg~~l~sgs~d---------g~V~vwd~~~~~~~  129 (432)
                                                           ....++++|++..++....+         ..|++||..+++.+
T Consensus       228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~  307 (368)
T d1mdah_         228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence                                                 01124556665555443211         35889999999988


Q ss_pred             EEEecCCceEEEEEccCCc-E-EEEEECCCeEEEEeCCceEEeecCCCceeeeecC
Q psy9319         130 YDICIQAATFTVAWHPKQY-L-LAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRG  183 (432)
Q Consensus       130 ~~~~~~~~V~~l~fspdg~-~-l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g  183 (432)
                      ..+.....+.+++|+|||+ + ++++..++.        |.+||..+|+.+..+..
T Consensus       308 ~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~--------v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         308 GPISNGHDSDAIIAAQDGASDNYANSAGTEV--------LDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ECCEEEEEECEEEECCSSSCEEEEEETTTTE--------EEEEESSSCEEEEECCC
T ss_pred             EEecCCCceeEEEECCCCCEEEEEEeCCCCe--------EEEEECCCCCEEEEEEC
Confidence            8888777889999999996 3 455566788        78888888887777653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.00  E-value=6.6e-10  Score=109.89  Aligned_cols=141  Identities=13%  Similarity=0.062  Sum_probs=107.2

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEcc-----CCcCEEEEEEcCCCCEEEEEeC---------C
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKA-----HPVTCICIEFDPTGKYFAVGSK---------D   73 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~-----h~~~V~~l~~spdg~~L~sgs~---------d   73 (432)
                      ..+.|.+++.++ ..  .|     .++.+||..+++....+..     |...|.++.|||||++|+.++.         +
T Consensus        20 ~~~~W~~d~~~~-~~--~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~   91 (470)
T d2bgra1          20 YSLRWISDHEYL-YK--QE-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (470)
T ss_dssp             CCCEECSSSEEE-EE--SS-----SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cCCEeCCCCEEE-EE--cC-----CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccC
Confidence            346677877654 21  23     3567889999987765554     4578999999999999998754         4


Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec-------------------
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI-------------------  134 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~-------------------  134 (432)
                      +.+.|||+.++.. ..+..|...+..+.|||||+.||... ++.+++|+..++........                   
T Consensus        92 ~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          92 ASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             ceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            6789999998874 56777889999999999999999865 66899999998877654321                   


Q ss_pred             CCceEEEEEccCCcEEEEEECCCe
Q psy9319         135 QAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       135 ~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .+....+.|||||+.|++...|.+
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECT
T ss_pred             cCCccccEECCCCCccceeEecCC
Confidence            122455789999999999876544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.5e-08  Score=93.72  Aligned_cols=155  Identities=12%  Similarity=0.043  Sum_probs=107.3

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE---EEccCCcCEEEEEEcCCCCEEEEEeC-CCeEEEE
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN---ILKAHPVTCICIEFDPTGKYFAVGSK-DALVSLW   79 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~---~l~~h~~~V~~l~~spdg~~L~sgs~-dg~I~iw   79 (432)
                      ...+..++|+|++..+++++..|+++..|++     .......   ....+...+.+++|+|||++|++++. ++.|.+|
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i-----~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI-----APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEE-----CTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEEEEE-----eCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            3567899999999988777776776655554     2322211   22233455678999999999988875 6789999


Q ss_pred             eCCCCeeEE--EEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEEEE-------ecCCceEEEEEccCCcE
Q psy9319          80 DAAELTCIR--TFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVYDI-------CIQAATFTVAWHPKQYL  149 (432)
Q Consensus        80 d~~~~~~~~--~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~~~-------~~~~~V~~l~fspdg~~  149 (432)
                      +........  ....+...+.++.++|+++++++++ .+..|.+|+..........       .....+..++|++++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            877655433  3345667789999999999988877 4567999998765433221       13455788999999988


Q ss_pred             EEEEEC-CCeEEEEe
Q psy9319         150 LAYACD-DKYDRKQD  163 (432)
Q Consensus       150 l~s~s~-d~~I~vwd  163 (432)
                      ++.... .+...+|+
T Consensus       191 ~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         191 AYCVNELNSSVDVWE  205 (333)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEeeccccCceEEEe
Confidence            776654 44544443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.78  E-value=1.3e-08  Score=100.34  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeC-----CCCEEEEEEeeCCCEEEEEeC---------CCeEEEEe
Q psy9319          57 CIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL-----DWPVRAISFSHDGALIASGSE---------DLTIDIAH  122 (432)
Q Consensus        57 ~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~i~~spdg~~l~sgs~---------dg~V~vwd  122 (432)
                      .+.|.+++.+++.  .++.|.+||+.++.....+..+     ...|.++.|||||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            5779999987764  5788999999999877655543     467999999999999998754         46789999


Q ss_pred             CCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceee
Q psy9319         123 VESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKK  179 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~  179 (432)
                      +.+++......+...+..+.|||||+.+|... ++.        +.+|+..++...+
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~--------l~~~~~~~g~~~~  146 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NND--------IYVKIEPNLPSYR  146 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTE--------EEEESSTTSCCEE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEee-ccc--------ceEEECCCCceee
Confidence            99987655445788899999999999999865 556        5555555554443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.75  E-value=6.8e-08  Score=91.19  Aligned_cols=104  Identities=15%  Similarity=0.024  Sum_probs=80.3

Q ss_pred             ccCCcCEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe----------
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVG-----SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS----------  113 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sg-----s~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs----------  113 (432)
                      ..+.+++.+++++|||+.++..     +..+.|.+||..+++.+.++..+..+  .++|||||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4678899999999999988764     23457999999999999888766544  799999999998875          


Q ss_pred             CCCeEEEEeCCCCcEEEEEec-CCc-------eEEEEEccCCcEEEEEE
Q psy9319         114 EDLTIDIAHVESGKKVYDICI-QAA-------TFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       114 ~dg~V~vwd~~~~~~~~~~~~-~~~-------V~~l~fspdg~~l~s~s  154 (432)
                      .++.|.+||+.+++.+..+.. ...       ...+.|+|++..++...
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~  143 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE
Confidence            357899999999999887752 222       23467778777655544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=1.1e-07  Score=90.36  Aligned_cols=149  Identities=9%  Similarity=-0.121  Sum_probs=101.6

Q ss_pred             cccccCCCCcceeee--eeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe----------CCCe
Q psy9319           8 PLLGLNPRPSLYQSS--VLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS----------KDAL   75 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s--~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs----------~dg~   75 (432)
                      ..++..|++....++  ...+++   ..+.++|..+++.+..+.++..+  .++|+|||+.|++++          .|+.
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~---~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGT---TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSS---EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCc---ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCe
Confidence            444556666543233  233333   35666788999999998887765  478999999988765          3678


Q ss_pred             EEEEeCCCCeeEEEEeeCCC-------CEEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCcEEEEEecCCceEEEEEccCC
Q psy9319          76 VSLWDAAELTCIRTFQRLDW-------PVRAISFSHDGALIASGS-EDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQ  147 (432)
Q Consensus        76 I~iwd~~~~~~~~~~~~h~~-------~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg  147 (432)
                      |.+||..+++++..+..+..       ....++|||||++|++++ .++.+.+||+.+++.+..+.......  .+....
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~  175 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAA  175 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEET
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCCC
Confidence            99999999998887765432       234689999999998876 57999999999999888876333221  111122


Q ss_pred             cEEEEEECCCeEEEEe
Q psy9319         148 YLLAYACDDKYDRKQD  163 (432)
Q Consensus       148 ~~l~s~s~d~~I~vwd  163 (432)
                      ..++..+.||.+.+++
T Consensus       176 ~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         176 ATHYLGSCPASLAASD  191 (368)
T ss_dssp             TEEECCCCTTSCEEEE
T ss_pred             ceEEEEcCCCCEEEEE
Confidence            3445556666644433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.40  E-value=3.3e-06  Score=82.08  Aligned_cols=158  Identities=12%  Similarity=0.041  Sum_probs=105.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCC-------------ceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISP-------------KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS   71 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~-------------~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs   71 (432)
                      ..+..+.|+|++....+++.....+             ..+.+...|..+.+....+... +....++|+|+|+++++++
T Consensus       116 ~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~  194 (441)
T d1qnia2         116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTC  194 (441)
T ss_dssp             CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEE
T ss_pred             CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEe
Confidence            3456788999988765554433222             2245566788777776666544 3467889999999998876


Q ss_pred             CC-----------------------------------------CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEE
Q psy9319          72 KD-----------------------------------------ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA  110 (432)
Q Consensus        72 ~d-----------------------------------------g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~  110 (432)
                      .+                                         +.+.+++......+..+.... ..+.+.++|||++++
T Consensus       195 ~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~  273 (441)
T d1qnia2         195 YNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFI  273 (441)
T ss_dssp             SCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEE
T ss_pred             cCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEE
Confidence            54                                         234444444444555555443 357899999999876


Q ss_pred             E-EeCCCeEEEEeCCCCc-----------EEEE-EecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         111 S-GSEDLTIDIAHVESGK-----------KVYD-ICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       111 s-gs~dg~V~vwd~~~~~-----------~~~~-~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      + +..+++|.+||+.+..           ++.- ....-.....+|+++|..+.+.+.|..|.-|++
T Consensus       274 ~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         274 ANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             EeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            5 5679999999986421           1111 112233566789999998888899999777776

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=2.4e-05  Score=69.75  Aligned_cols=164  Identities=12%  Similarity=0.045  Sum_probs=96.2

Q ss_pred             CCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC-e--EEEEe
Q psy9319           4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA-L--VSLWD   80 (432)
Q Consensus         4 ~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg-~--I~iwd   80 (432)
                      .+.+..-.|||+|..++.+......   ..+.+.+...+ ....+..+.+...+..|||+|..++..+... .  +..+.
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGR---SALVIQTLANG-AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSS---CEEEEEETTTC-CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCceeeeEECCCCCEEEEEEeeccC---cceeeeecccC-ceeEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence            3445567899999998554333222   23344444443 4445566778888999999999887655321 1  11111


Q ss_pred             CCCC---------------------e----------------------eEEEEeeCCCCEEEEEEeeCCCEEEEEeCCC-
Q psy9319          81 AAEL---------------------T----------------------CIRTFQRLDWPVRAISFSHDGALIASGSEDL-  116 (432)
Q Consensus        81 ~~~~---------------------~----------------------~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg-  116 (432)
                      ....                     .                      ....+..+........|+|++..++..+.++ 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             cccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCC
Confidence            1100                     0                      0001112233456788999999888776543 


Q ss_pred             --eEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCce
Q psy9319         117 --TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPI  177 (432)
Q Consensus       117 --~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~  177 (432)
                        .+.+.|...+.. ..+..........|+|||+.|+..+..+.-     ..+.++++.++..
T Consensus       194 ~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~-----~~l~~~~~dg~~~  250 (269)
T d2hqsa1         194 QQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMG-----SVLNLVSTDGRFK  250 (269)
T ss_dssp             CEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTE-----EEEEEEETTSCCE
T ss_pred             ceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCC-----cEEEEEECCCCCE
Confidence              455556655543 444456667889999999988876543320     1266777776544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.29  E-value=3.1e-06  Score=82.29  Aligned_cols=151  Identities=6%  Similarity=-0.079  Sum_probs=103.2

Q ss_pred             ccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc-cCCcCEEEEEEcCCCC--EEEEEeCCC-----------
Q psy9319           9 LLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK-AHPVTCICIEFDPTGK--YFAVGSKDA-----------   74 (432)
Q Consensus         9 ~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~-~h~~~V~~l~~spdg~--~L~sgs~dg-----------   74 (432)
                      ....+|+|..++++...+.     .+.++|..+++....+. .+...+..++|+|+|+  ++++++.+.           
T Consensus        76 ~t~gtpDGr~lfV~d~~~~-----rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          76 MTDGRYDGKYLFINDKANT-----RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             EETTEEEEEEEEEEETTTT-----EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             eecccCCCCEEEEEcCCCC-----EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            3445677777655533322     46678888998888775 4567789999999997  444444332           


Q ss_pred             ------eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCC---------------------------------
Q psy9319          75 ------LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED---------------------------------  115 (432)
Q Consensus        75 ------~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~d---------------------------------  115 (432)
                            .+..+|..+.....++... +....+.|+|+|+++++++.+                                 
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             cccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence                  2345788877776666543 457889999999998877643                                 


Q ss_pred             --------CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEE-EECCCeEEEEeCC
Q psy9319         116 --------LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAY-ACDDKYDRKQDCG  165 (432)
Q Consensus       116 --------g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s-~s~d~~I~vwd~~  165 (432)
                              +.+.+++......+..+........+.++|||+++++ +..+++|.+||+.
T Consensus       230 k~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             CCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             CEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence                    3344555555566667765556778999999998765 4678886666654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.27  E-value=6.3e-06  Score=78.35  Aligned_cols=155  Identities=12%  Similarity=0.043  Sum_probs=93.7

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCccee--eEEEc--cCCcCEEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEE--QNILK--AHPVTCICIEFDPTGKYFAVGS-KDALVSLW   79 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~--~~~l~--~h~~~V~~l~~spdg~~L~sgs-~dg~I~iw   79 (432)
                      .++..+.|+|++..++++..  +...+|.+.+ + .++..  ...+.  ........++|+|+|++++... .+++|.+|
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~--g~d~v~~~~~-~-~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~  220 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADL--TANKLWTHRK-L-ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEET--TTTEEEEEEE-C-TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeC--CCCEEEEEEc-c-CCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEE
Confidence            35678999999998755532  2333343332 2 22222  22222  2345678999999999886554 57899999


Q ss_pred             eCCCCeeE--EEEe-----------------eCCCCEEEEEEeeCCCEEEEEeC-C-----CeEEEEeCCCCcEEEEE--
Q psy9319          80 DAAELTCI--RTFQ-----------------RLDWPVRAISFSHDGALIASGSE-D-----LTIDIAHVESGKKVYDI--  132 (432)
Q Consensus        80 d~~~~~~~--~~~~-----------------~h~~~V~~i~~spdg~~l~sgs~-d-----g~V~vwd~~~~~~~~~~--  132 (432)
                      ++..+...  ....                 .+......+.++|||++|+++.. +     ..|..|++.....+...  
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            98754322  1111                 01123567899999999987742 1     34777777543322211  


Q ss_pred             -e----cCCceEEEEEcc-CCcEEEEEE-CCCeEEEEe
Q psy9319         133 -C----IQAATFTVAWHP-KQYLLAYAC-DDKYDRKQD  163 (432)
Q Consensus       133 -~----~~~~V~~l~fsp-dg~~l~s~s-~d~~I~vwd  163 (432)
                       .    .......++++| +|++|+++. .++.|.+|+
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence             1    234567799998 789887775 567744443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.13  E-value=0.00015  Score=65.60  Aligned_cols=146  Identities=9%  Similarity=0.081  Sum_probs=98.3

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEE--ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNIL--KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      ...+++.+++.++++.+   ..   ..+.+++ .+++.+..+  ..+......++++++|..+++....+.|.+||.. |
T Consensus       116 p~~~avd~~G~i~v~~~---~~---~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G  187 (279)
T d1q7fa_         116 PRGVTVDNKGRIIVVEC---KV---MRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-G  187 (279)
T ss_dssp             EEEEEECTTSCEEEEET---TT---TEEEEEC-TTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-C
T ss_pred             cceeccccCCcEEEEee---cc---ceeeEec-cCCceeecccccccccccceeeeccceeEEeeeccccceeeeecC-C
Confidence            34556666665543321   11   1233333 245555554  3455678889999999998888888999999976 5


Q ss_pred             eeEEEEe--eCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEECCCe
Q psy9319          85 TCIRTFQ--RLDWPVRAISFSHDGALIASGSE-DLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus        85 ~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~-dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      ..+.++-  +.......|++.|+|+++++-+. ++.|.+++. +|+.+..+.   .......+++.|+|.+++ ++.++.
T Consensus       188 ~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~  265 (279)
T d1q7fa_         188 QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYR  265 (279)
T ss_dssp             CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTE
T ss_pred             ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCe
Confidence            6666663  23456889999999997776544 457999984 688777765   233578899999997655 557888


Q ss_pred             EEEE
Q psy9319         159 DRKQ  162 (432)
Q Consensus       159 I~vw  162 (432)
                      |++|
T Consensus       266 v~~f  269 (279)
T d1q7fa_         266 LYIY  269 (279)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.06  E-value=7.2e-05  Score=70.74  Aligned_cols=158  Identities=7%  Similarity=-0.103  Sum_probs=88.1

Q ss_pred             CCCCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEE--EEEe-CCCeEE
Q psy9319           1 MEGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYF--AVGS-KDALVS   77 (432)
Q Consensus         1 ~~g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L--~sgs-~dg~I~   77 (432)
                      +|+.+.+..++++|++..+.++..  ..+   .....+..++...............++++++++.+  ++++ ..++|.
T Consensus        36 ~~~~~~~s~la~s~d~~~ly~~~~--~~~---~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~  110 (365)
T d1jofa_          36 IPQDEPISWMTFDHERKNIYGAAM--KKW---SSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             CCTTCCCSEEEECTTSSEEEEEEB--TEE---EEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEE
T ss_pred             ccCCCCCCEEEEcCCCCEEEEEeC--CcE---EEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEE
Confidence            356666778999999988755532  222   22222333322221111122334567788888743  3322 234555


Q ss_pred             EEeCCC-C------------ee---EEE-EeeCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEeCCCCcEEE---EEe---
Q psy9319          78 LWDAAE-L------------TC---IRT-FQRLDWPVRAISFSHDGALIASGSE-DLTIDIAHVESGKKVY---DIC---  133 (432)
Q Consensus        78 iwd~~~-~------------~~---~~~-~~~h~~~V~~i~~spdg~~l~sgs~-dg~V~vwd~~~~~~~~---~~~---  133 (432)
                      .+.+.. +            ..   ... -......++++.|+|||+++++++. ...|.+|+......+.   ...   
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T d1jofa_         111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             EeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC
Confidence            544321 1            11   101 0112335789999999998888763 5678888765432222   111   


Q ss_pred             cCCceEEEEEccCCcEEEEEE-CCCeEEEEe
Q psy9319         134 IQAATFTVAWHPKQYLLAYAC-DDKYDRKQD  163 (432)
Q Consensus       134 ~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd  163 (432)
                      .......++|+|+|+++++.. .++.|.+|+
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            345689999999999887766 456643333

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.05  E-value=8.1e-05  Score=68.19  Aligned_cols=119  Identities=10%  Similarity=0.023  Sum_probs=87.9

Q ss_pred             eeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEe
Q psy9319          43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH  122 (432)
Q Consensus        43 ~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd  122 (432)
                      +.+..+... ..+..++++|||+++++...+++|..|+....  ...+......+.+++|+|+|+++++...++.+..|+
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence            334444332 24778999999999999999999999987643  344555678899999999999999888888888887


Q ss_pred             CCCC--cEEEEE--ecCCceEEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         123 VESG--KKVYDI--CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       123 ~~~~--~~~~~~--~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ....  ......  ........++++++|.++++.+.++.+..+|.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~  141 (302)
T d2p4oa1          96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  141 (302)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeec
Confidence            6543  222222  24455788999999999888888888555554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=7e-05  Score=67.08  Aligned_cols=105  Identities=9%  Similarity=-0.022  Sum_probs=77.4

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI  132 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~  132 (432)
                      ....+++++|+|.++++...++.|..+|.............-.....+++.++|.++++....+.|..++...... ..+
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~  218 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVL  218 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EEC
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEE
Confidence            3457899999999888888888999999875543332234456678999999999888888888898888755432 222


Q ss_pred             e--cCCceEEEEEccCCcEEEEEECCCe
Q psy9319         133 C--IQAATFTVAWHPKQYLLAYACDDKY  158 (432)
Q Consensus       133 ~--~~~~V~~l~fspdg~~l~s~s~d~~  158 (432)
                      .  .-.....|+++++|.++++-..+++
T Consensus       219 ~~~~~~~P~~i~~d~~g~l~vad~~~~r  246 (260)
T d1rwia_         219 PFTGLNTPLAVAVDSDRTVYVADRGNDR  246 (260)
T ss_dssp             CCCSCCCEEEEEECTTCCEEEEEGGGTE
T ss_pred             ccCCCCCeEEEEEeCCCCEEEEECCCCE
Confidence            2  2345788999999988777666666

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.93  E-value=0.00017  Score=66.63  Aligned_cols=150  Identities=8%  Similarity=0.033  Sum_probs=93.0

Q ss_pred             ccccccCCCCcceeeeeeecCC---------CceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCC-----EEEEEeC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDIS---------PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGK-----YFAVGSK   72 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~---------~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~-----~L~sgs~   72 (432)
                      .+.+.+.|++.+++...+....         .....+..++. .++..... .+....+.++|+|++.     ++++-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeec
Confidence            4667888888877443221110         11123333332 33333222 2233446789998764     4455567


Q ss_pred             CCeEEEEeCCCCeeEE------EEee-CCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec-CCceEEEEEc
Q psy9319          73 DALVSLWDAAELTCIR------TFQR-LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI-QAATFTVAWH  144 (432)
Q Consensus        73 dg~I~iwd~~~~~~~~------~~~~-h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~-~~~V~~l~fs  144 (432)
                      .+.|..||+.....+.      .+.+ +......+++.++|+++++....+.|.+||..++..+..+.. ...+.+++|.
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg  276 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEe
Confidence            7889988875322221      1111 123456899999999888888889999999988887776663 4568899999


Q ss_pred             cCCcE-EEEEECCCe
Q psy9319         145 PKQYL-LAYACDDKY  158 (432)
Q Consensus       145 pdg~~-l~s~s~d~~  158 (432)
                      |+++. +++.+.++.
T Consensus       277 ~d~~~lyVt~~~~g~  291 (314)
T d1pjxa_         277 PQTKTIFVTEHENNA  291 (314)
T ss_dssp             TTSSEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCc
Confidence            99874 455556666

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=0.00017  Score=64.42  Aligned_cols=151  Identities=9%  Similarity=-0.021  Sum_probs=97.3

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL   84 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~   84 (432)
                      +....+++++++.++ ++.   .  ....+.+++..+...+....+ .....+++++++|.++++-.....+..++....
T Consensus        57 ~~p~gvav~~~g~i~-v~d---~--~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~  129 (260)
T d1rwia_          57 YQPQGLAVDGAGTVY-VTD---F--NNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK  129 (260)
T ss_dssp             CSCCCEEECTTCCEE-EEE---T--TTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCS
T ss_pred             cCceEEEEcCCCCEE-Eee---e--eeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccc
Confidence            344567777877655 332   1  122344444434433322222 345689999999998887777777888887654


Q ss_pred             eeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEE-ecCCceEEEEEccCCcEEEEEECCCeEEEE
Q psy9319          85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQ  162 (432)
Q Consensus        85 ~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~-~~~~~V~~l~fspdg~~l~s~s~d~~I~vw  162 (432)
                      ..............+++++|+|.++++...++.|..+|.......... ........++++++|.++++....+.|..+
T Consensus       130 ~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         130 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             SCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             eeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEE
Confidence            332221222345678999999998888888889999998765443322 244557889999999988877777774333

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=8.6e-05  Score=65.94  Aligned_cols=128  Identities=11%  Similarity=0.065  Sum_probs=83.0

Q ss_pred             cCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCeeEE
Q psy9319          12 LNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA---LVSLWDAAELTCIR   88 (432)
Q Consensus        12 ~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg---~I~iwd~~~~~~~~   88 (432)
                      +++++..+..+...++..   ++...+...+ ....+..+........|+|+|..++..+.++   .+.+.+...+..  
T Consensus       134 ~~~~~~~~~~~~~~~g~~---~i~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--  207 (269)
T d2hqsa1         134 WFPDSQNLAFTSDQAGRP---QVYKVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--  207 (269)
T ss_dssp             ECTTSSEEEEEECTTSSC---EEEEEETTSS-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--
T ss_pred             cccccccceecccccCCc---eEeeeecccc-cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--
Confidence            444444443443333333   3444444443 3344555667778889999999888776554   455556555443  


Q ss_pred             EEeeCCCCEEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCcEEEEEecCCceEEEEEcc
Q psy9319          89 TFQRLDWPVRAISFSHDGALIASGSE---DLTIDIAHVESGKKVYDICIQAATFTVAWHP  145 (432)
Q Consensus        89 ~~~~h~~~V~~i~~spdg~~l~sgs~---dg~V~vwd~~~~~~~~~~~~~~~V~~l~fsp  145 (432)
                      ....+........|||||+.|+..+.   ...|+++++..+.........+.+...+|||
T Consensus       208 ~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         208 QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            34445667788999999999886553   3578999998877655445667788899998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.5e-05  Score=75.60  Aligned_cols=139  Identities=9%  Similarity=0.045  Sum_probs=92.8

Q ss_pred             cccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCC---cCEEEEEEcCCCCEEEEEeC---------CCeEE
Q psy9319          10 LGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHP---VTCICIEFDPTGKYFAVGSK---------DALVS   77 (432)
Q Consensus        10 l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~---~~V~~l~~spdg~~L~sgs~---------dg~I~   77 (432)
                      ..|.+++..+. . .     ....+.++++.+++....+....   ..+....|||||++++.+..         .+.+.
T Consensus        22 ~~W~~~~~~~~-~-~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~   94 (465)
T d1xfda1          22 AKWISDTEFIY-R-E-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (465)
T ss_dssp             CCBSSSSCBCC-C-C-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             CEEeCCCcEEE-E-e-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEE
Confidence            45666665432 1 1     22356778888877654454432   35677889999999877643         46789


Q ss_pred             EEeCCCCeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe--cCCce---------------
Q psy9319          78 LWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC--IQAAT---------------  138 (432)
Q Consensus        78 iwd~~~~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~--~~~~V---------------  138 (432)
                      ++|+.++.......  .....+....|||||+.||... ++.|.+.+..++..+....  ....|               
T Consensus        95 i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~  173 (465)
T d1xfda1          95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (465)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcc
Confidence            99999876533222  2234466689999999998876 5678899888776665543  11112               


Q ss_pred             --EEEEEccCCcEEEEEECC
Q psy9319         139 --FTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       139 --~~l~fspdg~~l~s~s~d  156 (432)
                        ..+.|||||+.||....|
T Consensus       174 ~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         174 THIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             SSEEEEECTTSSEEEEEEEE
T ss_pred             ccceEEECCCCCeEEEEEec
Confidence              467899999999987643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.80  E-value=0.00061  Score=62.78  Aligned_cols=150  Identities=9%  Similarity=0.023  Sum_probs=93.8

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYF-AVGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~sgs~dg~I~iwd~~~   83 (432)
                      +..+.+.+.|++.+++.............+...+.. +..+..+...-...+.++|+|+++.| ++-+..+.|..||+..
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            334667788888766333221121222334444433 33333333333446789999999866 4556678999998763


Q ss_pred             -CeeEEE-------EeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC-------CceEEEEEccCCc
Q psy9319          84 -LTCIRT-------FQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ-------AATFTVAWHPKQY  148 (432)
Q Consensus        84 -~~~~~~-------~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~-------~~V~~l~fspdg~  148 (432)
                       +.....       ..........+++.++|+++++....+.|.++|. .|+.+..+..+       ..+.+++|.|++.
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence             211111       1111233568999999998888889999999996 68888887533       2478999999887


Q ss_pred             EEEEEECC
Q psy9319         149 LLAYACDD  156 (432)
Q Consensus       149 ~l~s~s~d  156 (432)
                      .+++.+.+
T Consensus       288 ~~~~t~~~  295 (319)
T d2dg1a1         288 QLIICSND  295 (319)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEcCC
Confidence            76665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.80  E-value=0.0005  Score=62.66  Aligned_cols=152  Identities=11%  Similarity=0.024  Sum_probs=97.6

Q ss_pred             CCCCcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           2 EGQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         2 ~g~n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      |...++..++++|++.++ ++...+.     .|..++.. +. ...+....+.+.+++|+|+|++++++..++.+.+|+.
T Consensus        25 p~~~~~e~iAv~pdG~l~-vt~~~~~-----~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          25 PVNTFLENLASAPDGTIF-VTNHEVG-----EIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             CTTCCEEEEEECTTSCEE-EEETTTT-----EEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCcCCEEECCCCCEE-EEeCCCC-----EEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            334467788999999877 5543333     34444433 32 3445556678999999999999999888888888876


Q ss_pred             CCCee-EEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEec-----------CCceEEEEEccCC
Q psy9319          82 AELTC-IRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI-----------QAATFTVAWHPKQ  147 (432)
Q Consensus        82 ~~~~~-~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~-----------~~~V~~l~fspdg  147 (432)
                      ..... ...+.  ........+.+.+++.++++.+.++.+..+|..++........           ...+..+.++. +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~  175 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-N  175 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-T
T ss_pred             cccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-C
Confidence            53221 22222  2445688999999999998888899999999887754332211           12244555543 2


Q ss_pred             cEEEEEECCCeEEEE
Q psy9319         148 YLLAYACDDKYDRKQ  162 (432)
Q Consensus       148 ~~l~s~s~d~~I~vw  162 (432)
                      .++++.+..+.|..+
T Consensus       176 ~l~~~~~~~~~i~~~  190 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRI  190 (302)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             ceeeecCCCCeEEec
Confidence            344444556664333

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.73  E-value=0.0013  Score=60.36  Aligned_cols=151  Identities=9%  Similarity=-0.014  Sum_probs=93.0

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKD----ALVSLWDAAE   83 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~d----g~I~iwd~~~   83 (432)
                      ..+.|++++.++++.      +....|..++..+......+.........++|+++|.++++...+    +.|...+..+
T Consensus        43 EG~~~D~~G~Ly~~D------~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLD------VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEEECTTSCEEEEE------TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             EeCEECCCCCEEEEE------CCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            455777888765332      223345556766665555555556678899999999988776432    3455566655


Q ss_pred             CeeEEEEee--CCCCEEEEEEeeCCCEEEEEeC------CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEE-E
Q psy9319          84 LTCIRTFQR--LDWPVRAISFSHDGALIASGSE------DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA-C  154 (432)
Q Consensus        84 ~~~~~~~~~--h~~~V~~i~~spdg~~l~sgs~------dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~-s  154 (432)
                      +........  -......+.+.|+|+++++...      .+.+..++...+........-.....++|+|+++.|+.+ +
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence            544333322  1235788999999997766432      234666666544433333344456789999999866555 4


Q ss_pred             CCCeEEEEeC
Q psy9319         155 DDKYDRKQDC  164 (432)
Q Consensus       155 ~d~~I~vwd~  164 (432)
                      ..+.|..||+
T Consensus       197 ~~~~I~~~d~  206 (319)
T d2dg1a1         197 TANRLHRIAL  206 (319)
T ss_dssp             GGTEEEEEEE
T ss_pred             cCCceEEEEE
Confidence            5677555553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00026  Score=69.11  Aligned_cols=167  Identities=10%  Similarity=0.037  Sum_probs=96.9

Q ss_pred             cccccCCCCcceeeeeeecCC---CceeEEEEeecCcceeeEEE--ccCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9319           8 PLLGLNPRPSLYQSSVLTDIS---PKQLDFKFKEHHKLEEQNIL--KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA   82 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~---~~~~~i~~~d~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~   82 (432)
                      ....+||++..++.+.-....   .....+.++|+.++......  ....+.+....|||||+.||... ++.|.+.+..
T Consensus        64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~  142 (465)
T d1xfda1          64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV  142 (465)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred             ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence            345689999876544211110   12346777888877654322  22334556688999999998876 6688888887


Q ss_pred             CCeeEEEEe-eCCCC-----------------EEEEEEeeCCCEEEEEeCC-C---------------------------
Q psy9319          83 ELTCIRTFQ-RLDWP-----------------VRAISFSHDGALIASGSED-L---------------------------  116 (432)
Q Consensus        83 ~~~~~~~~~-~h~~~-----------------V~~i~~spdg~~l~sgs~d-g---------------------------  116 (432)
                      ++..+.... +..+.                 -..+.|||||++||....| .                           
T Consensus       143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G  222 (465)
T d1xfda1         143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG  222 (465)
T ss_dssp             SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred             CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccC
Confidence            766544332 21121                 2467899999999986532 2                           


Q ss_pred             ------eEEEEeCCCCcEEEEEe-------cCCceEEEEEccCCcEEEEEEC-CCeEEEEeCCceEEeecCCCceeee
Q psy9319         117 ------TIDIAHVESGKKVYDIC-------IQAATFTVAWHPKQYLLAYACD-DKYDRKQDCGNLKVFGFLPEPIKKR  180 (432)
Q Consensus       117 ------~V~vwd~~~~~~~~~~~-------~~~~V~~l~fspdg~~l~s~s~-d~~I~vwd~~~i~vwd~~~~~~~~~  180 (432)
                            .+.++|+.++.......       ...-+..+.|+|++.+++.... +..     ...+.++|..+|.+...
T Consensus       223 ~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~-----~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN-----VSILTLCDATTGVCTKK  295 (465)
T ss_dssp             SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC-----EEEEEEEETTTCCEEEE
T ss_pred             CCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccc-----cceEEEEcCCCCcEEEE
Confidence                  24445554433221111       0112567889999886665432 322     11266677777765443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.53  E-value=0.00025  Score=62.85  Aligned_cols=95  Identities=15%  Similarity=0.040  Sum_probs=69.7

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeC-C-----CeEEEEeCCCCcEEE
Q psy9319          59 EFDPT--GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE-D-----LTIDIAHVESGKKVY  130 (432)
Q Consensus        59 ~~spd--g~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~-d-----g~V~vwd~~~~~~~~  130 (432)
                      ..|||  |..++..+ ++.|.+.|+.++.. ..+..+.+.+...+|||||+.||..+. +     ..|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99888765 56798999998775 466777788999999999999986542 2     248888888776654


Q ss_pred             EEec-------CCceEEEEEccCCcEEEEEEC
Q psy9319         131 DICI-------QAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus       131 ~~~~-------~~~V~~l~fspdg~~l~s~s~  155 (432)
                      ....       ......+.|+|+|+.|+....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            3221       123567899999999887644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.49  E-value=0.0018  Score=59.45  Aligned_cols=156  Identities=9%  Similarity=-0.098  Sum_probs=92.0

Q ss_pred             ccccccCCCCcceeeeeeec-CCCceeEEEEeecCcceeeEEEcc----CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9319           7 IPLLGLNPRPSLYQSSVLTD-ISPKQLDFKFKEHHKLEEQNILKA----HPVTCICIEFDPTGKYFAVGSKDALVSLWDA   81 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D-~~~~~~~i~~~d~~~~~~~~~l~~----h~~~V~~l~~spdg~~L~sgs~dg~I~iwd~   81 (432)
                      ....+|+|++.+++++.... .......|..++..++........    ..+....++|+++|..++++.....|..+|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            45567899999885542211 112234566677776654433322    1233568999999998888877778989998


Q ss_pred             CCCeeEEEEeeCCC----CEEEEEEeeCCCEEEEEeC---------------CCeEEEEeCCCCcEEEEEecCCceEEEE
Q psy9319          82 AELTCIRTFQRLDW----PVRAISFSHDGALIASGSE---------------DLTIDIAHVESGKKVYDICIQAATFTVA  142 (432)
Q Consensus        82 ~~~~~~~~~~~h~~----~V~~i~~spdg~~l~sgs~---------------dg~V~vwd~~~~~~~~~~~~~~~V~~l~  142 (432)
                      .............+    ..+.+++.|+|.+.++-+.               .|.|..++. .++.......-.....++
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~  178 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIA  178 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcceeeeeE
Confidence            75443211111111    3578999999998776432               245655654 344443333334456789


Q ss_pred             EccCCc----EE-EEEECCCeEEEEe
Q psy9319         143 WHPKQY----LL-AYACDDKYDRKQD  163 (432)
Q Consensus       143 fspdg~----~l-~s~s~d~~I~vwd  163 (432)
                      |+|++.    .| ++-+..+.|..||
T Consensus       179 ~~~d~d~~~~~lyv~d~~~~~i~~~d  204 (314)
T d1pjxa_         179 VRHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             EEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             ECCCCCcceeEEEEEeecccceEEee
Confidence            998764    34 4445566644443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.38  E-value=0.0083  Score=53.47  Aligned_cols=110  Identities=11%  Similarity=0.050  Sum_probs=81.6

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEe--eCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEE
Q psy9319          52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV  129 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~  129 (432)
                      .....++++.++|.++++....+.+.+++.. +..+..+.  .+......+++.+++..+++....+.|.+||. +|+.+
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~  190 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYL  190 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEE
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCcee
Confidence            3456788889999888887777888888865 55566553  34567888999999988888888899999996 56777


Q ss_pred             EEEec---CCceEEEEEccCCcEEEEEEC-CCeEEEEe
Q psy9319         130 YDICI---QAATFTVAWHPKQYLLAYACD-DKYDRKQD  163 (432)
Q Consensus       130 ~~~~~---~~~V~~l~fspdg~~l~s~s~-d~~I~vwd  163 (432)
                      ..+..   ......++++|+|+++++-+. ++.|.+|+
T Consensus       191 ~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         191 RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             eeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            77752   334788999999997776543 34544433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.20  E-value=0.00094  Score=58.91  Aligned_cols=109  Identities=16%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             cccCCC--CcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeC-C-----CeEEEEeC
Q psy9319          10 LGLNPR--PSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK-D-----ALVSLWDA   81 (432)
Q Consensus        10 l~~~p~--~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~-d-----g~I~iwd~   81 (432)
                      +.++|+  |..++.++       .+++.+.|..++.. ..|..+.+.+...+|||||+.|+..+. +     ..|.+++.
T Consensus         4 ~~~sPdi~G~~v~f~~-------~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC-------CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CCEEEEEETTEEEEEE-------TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             cccCCCCCCCEEEEEe-------CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            346688  88764442       23566667776654 567777788899999999999886542 2     24778888


Q ss_pred             CCCeeEEEEeeC-------CCCEEEEEEeeCCCEEEEEeCC------CeEEEEeCCCCc
Q psy9319          82 AELTCIRTFQRL-------DWPVRAISFSHDGALIASGSED------LTIDIAHVESGK  127 (432)
Q Consensus        82 ~~~~~~~~~~~h-------~~~V~~i~~spdg~~l~sgs~d------g~V~vwd~~~~~  127 (432)
                      .++.... +..+       ......+.|+|+|+.|+.....      ..+...+...+.
T Consensus        76 ~~g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          76 ENGEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             TTTEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             cCCceEE-eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            8776543 2211       2345678999999998876432      234555554443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.15  E-value=0.013  Score=52.87  Aligned_cols=145  Identities=12%  Similarity=0.012  Sum_probs=92.9

Q ss_pred             CcccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC
Q psy9319           5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLWDAAE   83 (432)
Q Consensus         5 n~I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iwd~~~   83 (432)
                      +.++++.+.|++.+++.+...+......  .++....++......+ -.....++|++++..++ +-+..+.|..|++..
T Consensus       103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g--~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         103 NRSNDGRMHPSGALWIGTMGRKAETGAG--SIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCE--EEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             ccceeeEECCCCCEEEEeccccccccce--eEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence            3457778888888774443322222222  2333334554444433 23457899999998654 556677898888652


Q ss_pred             ------CeeE--EEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecC-CceEEEEEc-cCCcEEEEE
Q psy9319          84 ------LTCI--RTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ-AATFTVAWH-PKQYLLAYA  153 (432)
Q Consensus        84 ------~~~~--~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~-~~V~~l~fs-pdg~~l~s~  153 (432)
                            +...  ..+.+..+....+++.++|+++++.-..+.|..||. .|+.+..+..+ ..+++++|- |+.+.|+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         180 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence                  1111  122233456788999999998887778889999995 68888888754 458999996 566555433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.50  E-value=0.22  Score=44.26  Aligned_cols=160  Identities=11%  Similarity=-0.012  Sum_probs=97.4

Q ss_pred             ccccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeEEEc--cC--CcCEEEEEEcCCCCEEEEEeCC----CeEEE
Q psy9319           7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILK--AH--PVTCICIEFDPTGKYFAVGSKD----ALVSL   78 (432)
Q Consensus         7 I~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~~l~--~h--~~~V~~l~~spdg~~L~sgs~d----g~I~i   78 (432)
                      +.++.+.+++.+++++  .+      -+..+|..+++......  ..  ...++.+.+.|+|++.++....    +.-.+
T Consensus        61 ~~~i~~~~dg~l~va~--~~------gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          61 GSALAKISDSKQLIAS--DD------GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             EEEEEEEETTEEEEEE--TT------EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             cEEEEEecCCCEEEEE--eC------ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeE
Confidence            3455566666655322  11      25566777775543322  11  2357889999999877665432    24456


Q ss_pred             EeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEeCCCC------cEEEEEe---cCCceEEEEEccCCc
Q psy9319          79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIASG-SEDLTIDIAHVESG------KKVYDIC---IQAATFTVAWHPKQY  148 (432)
Q Consensus        79 wd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg-s~dg~V~vwd~~~~------~~~~~~~---~~~~V~~l~fspdg~  148 (432)
                      |.+..+.....+. .-...+.++|+|++..++.+ +..+.|+.+++...      .......   ..+....++++.+|+
T Consensus       133 ~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         133 YHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             EEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             eeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            6666666544443 33456789999999866544 56788999887431      1111121   344577899999999


Q ss_pred             EEEEEECCCeEEEEeCC--ceEEeecCCC
Q psy9319         149 LLAYACDDKYDRKQDCG--NLKVFGFLPE  175 (432)
Q Consensus       149 ~l~s~s~d~~I~vwd~~--~i~vwd~~~~  175 (432)
                      +.++.-..+.|..||..  .+..+.+...
T Consensus       212 lWva~~~~g~V~~~dp~G~~~~~i~lP~~  240 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDTDGNHIARYEVPGK  240 (295)
T ss_dssp             EEEEEETTTEEEEECTTCCEEEEEECSCS
T ss_pred             EEeeeeCCCceEEecCCCcEeeEecCCCC
Confidence            88877778887777752  2444555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.24  Score=43.32  Aligned_cols=142  Identities=8%  Similarity=-0.020  Sum_probs=82.1

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGS--KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIAS  111 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s  111 (432)
                      |.+.+.........+.........++++|...+|+-..  ..+.|...++............-....++++.+.+..|+.
T Consensus       101 I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEE
Confidence            44445444433444555556678999998555554332  3456777777644433333334456789999998777776


Q ss_pred             Ee-CCCeEEEEeCCCCcEEEEEe---cCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeeecCC
Q psy9319         112 GS-EDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRKRGG  184 (432)
Q Consensus       112 gs-~dg~V~vwd~~~~~~~~~~~---~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~~g~  184 (432)
                      +. ..+.|...|+..........   .......+++. ++.+.++-..++.        |...+..+|.....+...
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~--------I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA--------IFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE--------EEEEETTTCCCCEEEECS
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe--------EEEEECCCCcceEEEEcC
Confidence            64 56889999987655433332   12335567766 2344443335555        555566666554444433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.38  Score=41.96  Aligned_cols=112  Identities=11%  Similarity=-0.112  Sum_probs=72.9

Q ss_pred             CcCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe--CCCeEEEEeCCCCcE
Q psy9319          52 PVTCICIEFDPTGKYFAV-GSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS--EDLTIDIAHVESGKK  128 (432)
Q Consensus        52 ~~~V~~l~~spdg~~L~s-gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs--~dg~V~vwd~~~~~~  128 (432)
                      ...+.++++.+.+..|+. -...+.|.+.++........+.........+++.|...+|+...  ..+.|...++.....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            345668888885555544 45567899999986665555555566789999999666665543  335677777755544


Q ss_pred             EEEEe-cCCceEEEEEccCCcEEEEE-ECCCeEEEEe
Q psy9319         129 VYDIC-IQAATFTVAWHPKQYLLAYA-CDDKYDRKQD  163 (432)
Q Consensus       129 ~~~~~-~~~~V~~l~fspdg~~l~s~-s~d~~I~vwd  163 (432)
                      ..... .-..+..+++++.+..|+.+ ...+.|...+
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~  192 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  192 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEE
Confidence            43333 33457889999877766666 4455644433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.95  E-value=0.079  Score=49.84  Aligned_cols=130  Identities=12%  Similarity=0.050  Sum_probs=81.1

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEEEEeCCC---------------eEEEE------------------
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDA---------------LVSLW------------------   79 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~sgs~dg---------------~I~iw------------------   79 (432)
                      .+.+.|..+++....+.- .+....++++|+|+++++.+.+.               .+.++                  
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            345567777766555443 23455788999999998877542               13333                  


Q ss_pred             -----eCCC--C-eeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCCC------------CcEEEEEecCCce
Q psy9319          80 -----DAAE--L-TCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVES------------GKKVYDICIQAAT  138 (432)
Q Consensus        80 -----d~~~--~-~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~~------------~~~~~~~~~~~~V  138 (432)
                           |...  + ..+..+. -....+.+.++|||+++++++ .+.+|.|+|+..            ..........-..
T Consensus       253 gV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP  331 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  331 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred             CceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence                 3321  1 1111222 223456789999999988776 689999999852            1112222344556


Q ss_pred             EEEEEccCCcEEEEEECCCeEEEEeC
Q psy9319         139 FTVAWHPKQYLLAYACDDKYDRKQDC  164 (432)
Q Consensus       139 ~~l~fspdg~~l~s~s~d~~I~vwd~  164 (432)
                      ..-+|+..|....|.--|..|.-|++
T Consensus       332 Lht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         332 LHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cccccCCCceEEEEeeccceEEEEec
Confidence            77899999876666678998666665

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.81  Score=39.69  Aligned_cols=131  Identities=10%  Similarity=-0.035  Sum_probs=78.8

Q ss_pred             EEEeecCcceeeEEEccCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEE
Q psy9319          34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFA-VGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG  112 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sg  112 (432)
                      |...+.........+......+.++++..-+..|+ +-...+.|.+.++....+...+......+..+++.|...+++..
T Consensus        60 I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_          60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             EEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEe
Confidence            33334333333334444446788999988665555 55567799999998655443344344678999999977766654


Q ss_pred             eC---CCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         113 SE---DLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       113 s~---dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      ..   .+.|..-++.......... .-.....+++++.+..|+.+. ..+.|...|+
T Consensus       140 ~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  196 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (263)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence            32   2335555665444333332 334567899998877776554 4566444444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.43  E-value=1.4  Score=38.14  Aligned_cols=124  Identities=7%  Similarity=-0.121  Sum_probs=73.2

Q ss_pred             ccCCcCEEEEEEcCCCCEEEEEe-C--CCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEeCC
Q psy9319          49 KAHPVTCICIEFDPTGKYFAVGS-K--DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS-EDLTIDIAHVE  124 (432)
Q Consensus        49 ~~h~~~V~~l~~spdg~~L~sgs-~--dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs-~dg~V~vwd~~  124 (432)
                      .........++++|...+++-.. .  .+.|.--++............-....++++.+.+..|+.+. ..+.|...|+.
T Consensus       118 ~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            33346678999999666665432 2  22355456654433333333345678999998877776664 67889999987


Q ss_pred             CCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         125 SGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       125 ~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      .+.....+........+++. ++.+.++-...+.        |...|..+|..+..+
T Consensus       198 g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~--------I~~~~~~~g~~~~~~  245 (263)
T d1npea_         198 QPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS--------VIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE--------EEEEETTTTEEEEEE
T ss_pred             CCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCE--------EEEEECCCCccceEE
Confidence            65544444433345577765 3333333334455        666677666655543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.05  E-value=0.61  Score=45.49  Aligned_cols=133  Identities=13%  Similarity=0.041  Sum_probs=79.3

Q ss_pred             EEEeecCcceeeEEEccCCc---------CEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCeeEEEEeeCC-------
Q psy9319          34 FKFKEHHKLEEQNILKAHPV---------TCICIEFDPTGK---YFAVGSKDALVSLWDAAELTCIRTFQRLD-------   94 (432)
Q Consensus        34 i~~~d~~~~~~~~~l~~h~~---------~V~~l~~spdg~---~L~sgs~dg~I~iwd~~~~~~~~~~~~h~-------   94 (432)
                      +...|..+|+.+..++.+..         ......+..+|.   .++.++.+|.+.++|..+|+.+.......       
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            34457788888777664322         112222233443   46778899999999999988764321100       


Q ss_pred             ------------------------------CCE--EEEEEeeCCCEEEEEeCC---------------------------
Q psy9319          95 ------------------------------WPV--RAISFSHDGALIASGSED---------------------------  115 (432)
Q Consensus        95 ------------------------------~~V--~~i~~spdg~~l~sgs~d---------------------------  115 (432)
                                                    +..  ...+++|+...++....+                           
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence                                          000  125667766655543322                           


Q ss_pred             ----------CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         116 ----------LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       116 ----------g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                                |.|..+|+.+|+.+.......+..+-..+..+.++++|+.|+.++-+|..+
T Consensus       434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~t  494 (571)
T d2ad6a1         434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCC
Confidence                      468888999999888876554433322333466788899999955555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.04  E-value=0.34  Score=47.30  Aligned_cols=129  Identities=9%  Similarity=-0.031  Sum_probs=78.7

Q ss_pred             eecCcceeeEEEccCCcCE---------EEEEEcCCC---CEEEEEeCCCeEEEEeCCCCeeEEEEeeCC----------
Q psy9319          37 KEHHKLEEQNILKAHPVTC---------ICIEFDPTG---KYFAVGSKDALVSLWDAAELTCIRTFQRLD----------   94 (432)
Q Consensus        37 ~d~~~~~~~~~l~~h~~~V---------~~l~~spdg---~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~----------   94 (432)
                      .|..+++....++.....+         .-+....+|   ..++.++.+|.+.++|..+|+.+.....-.          
T Consensus       275 ld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~  354 (560)
T d1kv9a2         275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (560)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             ecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChh
Confidence            4667777766554322211         112222234   356778889999999999998765432100          


Q ss_pred             ------------------------CC--EEEEEEeeCCCEEEEEeC----------------------------------
Q psy9319          95 ------------------------WP--VRAISFSHDGALIASGSE----------------------------------  114 (432)
Q Consensus        95 ------------------------~~--V~~i~~spdg~~l~sgs~----------------------------------  114 (432)
                                              +.  -...+++|+...++....                                  
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  434 (560)
T d1kv9a2         355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (560)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             hccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCc
Confidence                                    00  013556776666654332                                  


Q ss_pred             --CCeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCC
Q psy9319         115 --DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG  165 (432)
Q Consensus       115 --dg~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~  165 (432)
                        .|.|.-||+.+|+.+..+....+...-.++-.|.++++|+.|+.++-+|..
T Consensus       435 ~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~  487 (560)
T d1kv9a2         435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (560)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECC
Confidence              256888999999999888766555443344456788889999995555443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.77  E-value=0.95  Score=44.02  Aligned_cols=57  Identities=5%  Similarity=-0.155  Sum_probs=38.0

Q ss_pred             CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeee
Q psy9319         116 LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKR  180 (432)
Q Consensus       116 g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~  180 (432)
                      |.|.-||+.+|+.+.......+...-..+-.|.++++|+.|+.        ++.+|..+|+.+-.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~--------l~A~Da~TGe~LW~  513 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR--------LVAYHAATGEKLWE  513 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE--------EEEEETTTCCEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCe--------EEEEECCCCcEeEE
Confidence            3577889999998888875544333233446778888999999        55555555555433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.49  E-value=0.21  Score=45.44  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             EEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCeeE--EEE-eeCCCCEEEEEEeeCCCEEEEEeCC-CeEEEE
Q psy9319          57 CIEFDPTGKYFAVGSKDA-----------LVSLWDAAELTCI--RTF-QRLDWPVRAISFSHDGALIASGSED-LTIDIA  121 (432)
Q Consensus        57 ~l~~spdg~~L~sgs~dg-----------~I~iwd~~~~~~~--~~~-~~h~~~V~~i~~spdg~~l~sgs~d-g~V~vw  121 (432)
                      ..+...+|++++.|+.+.           .+.+||..++...  ... ..+.......++.++|.+++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            334456888888887431           3779999876542  222 2233334466788999999888754 689999


Q ss_pred             eCCCCcEEEEEe--cCCceEEEEEccCCcEEEEEECC
Q psy9319         122 HVESGKKVYDIC--IQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       122 d~~~~~~~~~~~--~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                      |..+..-...-.  ....-.+++..+||.+++.|+.+
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             cCccCcccccccccccccccceeeecCCceeeecccc
Confidence            998765433211  22223457777899999988754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.24  E-value=0.38  Score=45.00  Aligned_cols=102  Identities=12%  Similarity=0.127  Sum_probs=65.3

Q ss_pred             CCcCEEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCeeEE-EEeeCCCCEEEEEEeeCCCEEEEEeCC---------
Q psy9319          51 HPVTCICIEFDPTGKYFAVG-SKDA----LVSLWDAAELTCIR-TFQRLDWPVRAISFSHDGALIASGSED---------  115 (432)
Q Consensus        51 h~~~V~~l~~spdg~~L~sg-s~dg----~I~iwd~~~~~~~~-~~~~h~~~V~~i~~spdg~~l~sgs~d---------  115 (432)
                      +.-.+..+++||+|++++.+ +..|    .|+++|+.+++.+. .+..  .....++|++|+..|+....+         
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            33344567789999988744 3333    69999999998753 2221  112468899999977654322         


Q ss_pred             -------CeEEEEeCCCCcE--EEEEe---cCCceEEEEEccCCcEEEEEE
Q psy9319         116 -------LTIDIAHVESGKK--VYDIC---IQAATFTVAWHPKQYLLAYAC  154 (432)
Q Consensus       116 -------g~V~vwd~~~~~~--~~~~~---~~~~V~~l~fspdg~~l~s~s  154 (432)
                             ..|..|.+.++..  ...+.   ....+..+..++++.+++...
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence                   2588888876533  23333   223466677899998877543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.24  E-value=1.1  Score=43.58  Aligned_cols=79  Identities=13%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             eEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEE--EEEccCCc-EEE
Q psy9319          75 LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT--VAWHPKQY-LLA  151 (432)
Q Consensus        75 ~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~--l~fspdg~-~l~  151 (432)
                      .|.-||+.+|+.+-.+.... +...-..+-.|.++++|+.||.++.+|..+|+.+..+.....+..  +.|..+|+ +|+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            46667777777766554322 222222344677888899999999999999999999875444333  56666886 444


Q ss_pred             EEE
Q psy9319         152 YAC  154 (432)
Q Consensus       152 s~s  154 (432)
                      ..+
T Consensus       537 v~~  539 (573)
T d1kb0a2         537 VAV  539 (573)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.90  E-value=0.99  Score=42.11  Aligned_cols=159  Identities=8%  Similarity=0.058  Sum_probs=101.2

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCeeEEEEe-eCCCCEEEEEEee--CCCEEEEEeCC------------------CeEEE
Q psy9319          63 TGKYFAVGS-KDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSH--DGALIASGSED------------------LTIDI  120 (432)
Q Consensus        63 dg~~L~sgs-~dg~I~iwd~~~~~~~~~~~-~h~~~V~~i~~sp--dg~~l~sgs~d------------------g~V~v  120 (432)
                      ||++|+... .++.|.+-|+.+.++...+. .....+..++..+  ...|++.++.+                  +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            788887765 57899999999998865443 2445677777765  44577766553                  24678


Q ss_pred             EeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCe---------------EEEEeC---------------CceEEe
Q psy9319         121 AHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY---------------DRKQDC---------------GNLKVF  170 (432)
Q Consensus       121 wd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~---------------I~vwd~---------------~~i~vw  170 (432)
                      +|..+.+....+...+....+.++|+|+++++.+.+..               +.+++.               +.+.+.
T Consensus       178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            99999988888877777888999999999998875421               222222               112222


Q ss_pred             ecCCCceeeeecCCCchhhhHHhhhcccccccccCccccccccceeccCcceeecccchhHH
Q psy9319         171 GFLPEPIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKK  232 (432)
Q Consensus       171 d~~~~~~~~~~~g~~mss~~~a~~~~~~~h~er~qp~~r~~~glLe~~~D~~lR~~d~~~k~  232 (432)
                      |....         .-+.....+......|-....|++++  -+..+.-+-++.+-|+.+-.
T Consensus       258 D~~~~---------~~~~v~~yIPVpKsPHGV~vSPDGKy--i~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         258 DGRKE---------ASSLFTRYIPIANNPHGCNMAPDKKH--LCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             ECSGG-----------CSSEEEEEEESSCCCEEECTTSSE--EEEECTTSSBEEEEEGGGHH
T ss_pred             ccccc---------CCcceeEEEecCCCCCceEECCCCCE--EEEeCCcCCcEEEEEehhhh
Confidence            22110         00011112333445677777777766  23566678889999987743

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.78  E-value=0.56  Score=45.89  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEE--EEEccCCc-EE
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT--VAWHPKQY-LL  150 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~--l~fspdg~-~l  150 (432)
                      |.|.-+|+.+|+..-.+..+. ++.+-.++..|.+++.|+.||.++.+|..+|+.+..+.....+..  +.|..+|+ ++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            467778888888776665332 233223455677888899999999999999999999974444332  67778885 44


Q ss_pred             EEE
Q psy9319         151 AYA  153 (432)
Q Consensus       151 ~s~  153 (432)
                      +..
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.72  E-value=3.3  Score=38.08  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=66.7

Q ss_pred             cccccCCCCcceeeeeeecCCCceeEEEEeecCcceeeE-EEccCCcCEEEEEEcCCCCEEEEEeCC-------------
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQN-ILKAHPVTCICIEFDPTGKYFAVGSKD-------------   73 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~~~~~i~~~d~~~~~~~~-~l~~h~~~V~~l~~spdg~~L~sgs~d-------------   73 (432)
                      ..+.++|++..++.+.+. +......+++.|+.+++.+. .+..-  ....++|++|+..|+....+             
T Consensus       128 ~~~~~Spd~~~la~s~d~-~G~e~~~l~v~Dl~tg~~~~~~i~~~--~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSA-SGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEECTTSSEEEEEEEE-TTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             cceEecCCCCEEEEEecc-ccCchheeEEeccCcceecccccccc--cccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            345689999988555444 44567899999999998764 33221  12467899999887654432             


Q ss_pred             ---CeEEEEeCCCCee--EEEEeeCC--CCEEEEEEeeCCCEEEEE
Q psy9319          74 ---ALVSLWDAAELTC--IRTFQRLD--WPVRAISFSHDGALIASG  112 (432)
Q Consensus        74 ---g~I~iwd~~~~~~--~~~~~~h~--~~V~~i~~spdg~~l~sg  112 (432)
                         ..|..+.+.+...  ...+....  ..+..+..++++++++..
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence               2577777766433  33444332  346677888999987643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.67  E-value=0.47  Score=46.36  Aligned_cols=80  Identities=10%  Similarity=0.121  Sum_probs=52.5

Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEE--EEEccCCc-EE
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT--VAWHPKQY-LL  150 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~--l~fspdg~-~l  150 (432)
                      |.|.-+|+.+|+.+-.... ..+..+-.++-.+.++++|+.|+.++.+|.++|+.+..+.....+.+  +.|..+|+ ++
T Consensus       444 G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            3566677777776655432 11222112233566888899999999999999999999975554443  66777885 44


Q ss_pred             EEEE
Q psy9319         151 AYAC  154 (432)
Q Consensus       151 ~s~s  154 (432)
                      ++..
T Consensus       523 ~v~~  526 (571)
T d2ad6a1         523 GSMY  526 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.76  E-value=7.7  Score=37.43  Aligned_cols=51  Identities=16%  Similarity=0.139  Sum_probs=36.2

Q ss_pred             CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCc
Q psy9319         116 LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN  166 (432)
Q Consensus       116 g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~  166 (432)
                      |.|.-||+.+|+.+.......++..-.++..|.+++.|+.|+.++-+|..+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T  503 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDT  503 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCC
Confidence            568889999999888776555544434445677888899999955555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.41  E-value=0.87  Score=44.18  Aligned_cols=81  Identities=11%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEE--EEEccCCc-EE
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT--VAWHPKQY-LL  150 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~--l~fspdg~-~l  150 (432)
                      |.|.-||+.+|+.+-.+.. ..+..+-.++-.+.+++.|+.||.++.+|..+|+.+..+.....+..  +.|..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            4577788888887665542 22222223344577888899999999999999999999875444332  56667885 55


Q ss_pred             EEEEC
Q psy9319         151 AYACD  155 (432)
Q Consensus       151 ~s~s~  155 (432)
                      ++.+.
T Consensus       517 ~v~aG  521 (560)
T d1kv9a2         517 AIMAG  521 (560)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            54443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.03  E-value=0.75  Score=44.92  Aligned_cols=58  Identities=16%  Similarity=0.086  Sum_probs=41.5

Q ss_pred             CeEEEEeCCCCcEEEEEecCCceEEEEEccCCcEEEEEECCCeEEEEeCCceEEeecCCCceeeee
Q psy9319         116 LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPEPIKKRK  181 (432)
Q Consensus       116 g~V~vwd~~~~~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~vwd~~~i~vwd~~~~~~~~~~  181 (432)
                      |.|.-+|+.+|+.+.......++..-..+..|.++++|+.|+.        ++.+|..+|+.+-++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~--------l~A~Da~TGe~LW~~  523 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGY--------FKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSE--------EEEEETTTCCEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCe--------EEEEECCCCcEeEEE
Confidence            5788899999999988876665554334556778888999999        555566666555443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.94  E-value=5.5  Score=36.24  Aligned_cols=98  Identities=11%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEE--
Q psy9319          54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD--  131 (432)
Q Consensus        54 ~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~--  131 (432)
                      .|..++|+.+  .|+.. .++.+..++...-........-..++.++.++|.  .++....+|.+.++++..+.....  
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            5888999754  45554 4567888887754444444445667888888775  566777889999999988864332  


Q ss_pred             ----EecCCceEEEEEccCCcEEEEEECC
Q psy9319         132 ----ICIQAATFTVAWHPKQYLLAYACDD  156 (432)
Q Consensus       132 ----~~~~~~V~~l~fspdg~~l~s~s~d  156 (432)
                          +...+.+.+++|++.|..++++..+
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence                2355778899999999988887543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.77  E-value=4  Score=38.03  Aligned_cols=103  Identities=10%  Similarity=0.043  Sum_probs=61.5

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeEEEE--e------eCCCCEEEEEEeeC---CCEEEEEeC-------
Q psy9319          53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF--Q------RLDWPVRAISFSHD---GALIASGSE-------  114 (432)
Q Consensus        53 ~~V~~l~~spdg~~L~sgs~dg~I~iwd~~~~~~~~~~--~------~h~~~V~~i~~spd---g~~l~sgs~-------  114 (432)
                      ...++++|.|+|++|++--..|.|.+++..++......  .      ...+....|+|+|+   ..+++....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            45679999999998887766899999998776543222  1      12356788999994   334443210       


Q ss_pred             C----C--eEEEEeCCCCcE-------E-EEEe--cCCceEEEEEccCCcEEEEEEC
Q psy9319         115 D----L--TIDIAHVESGKK-------V-YDIC--IQAATFTVAWHPKQYLLAYACD  155 (432)
Q Consensus       115 d----g--~V~vwd~~~~~~-------~-~~~~--~~~~V~~l~fspdg~~l~s~s~  155 (432)
                      +    +  .+..+.......       + ..+.  ..+....|.|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    1  133333322211       1 1111  2234678999999987776664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.68  E-value=3.6  Score=37.11  Aligned_cols=125  Identities=12%  Similarity=0.043  Sum_probs=75.2

Q ss_pred             EEEEeecCcceeeEEEccCCcCEEEEEEc------CCCCEEEEEeC--C--CeEEEEeCCC-CeeEEEEeeC-------C
Q psy9319          33 DFKFKEHHKLEEQNILKAHPVTCICIEFD------PTGKYFAVGSK--D--ALVSLWDAAE-LTCIRTFQRL-------D   94 (432)
Q Consensus        33 ~i~~~d~~~~~~~~~l~~h~~~V~~l~~s------pdg~~L~sgs~--d--g~I~iwd~~~-~~~~~~~~~h-------~   94 (432)
                      -+.++|+ .|+.+..+..  +.+..+..-      ..+.-|+.++.  +  .+|.+|.+.. ...+..+...       .
T Consensus        51 Gl~vYdL-~G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~  127 (353)
T d1h6la_          51 GLAVYSL-EGKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAI  127 (353)
T ss_dssp             CCEEEET-TCCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSS
T ss_pred             CEEEEcC-CCcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccccccccc
Confidence            4677776 5777777653  455555432      12223455542  2  3677887652 2223333221       1


Q ss_pred             CCEEEEEE--ee-CCC-EEEEEeCCCeEEEEeCC---CC----cEEEEEecCCceEEEEEccCCcEEEEEECCCeEE
Q psy9319          95 WPVRAISF--SH-DGA-LIASGSEDLTIDIAHVE---SG----KKVYDICIQAATFTVAWHPKQYLLAYACDDKYDR  160 (432)
Q Consensus        95 ~~V~~i~~--sp-dg~-~l~sgs~dg~V~vwd~~---~~----~~~~~~~~~~~V~~l~fspdg~~l~s~s~d~~I~  160 (432)
                      ..++.+|+  +| +|. +++....+|.+..|.+.   .+    ..+..+.....+..|++++....|+.+-.+..|+
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw  204 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIW  204 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceE
Confidence            24666776  56 454 44555678888888663   33    3455566788899999999888899888876533

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.18  E-value=0.84  Score=44.73  Aligned_cols=79  Identities=13%  Similarity=0.164  Sum_probs=53.1

Q ss_pred             CeEEEEeCCCCeeEEEEeeCCCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEecCCceEE--EEEccCCc-EE
Q psy9319          74 ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT--VAWHPKQY-LL  150 (432)
Q Consensus        74 g~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~~~~~V~~--l~fspdg~-~l  150 (432)
                      |.|.-||+.+|+.+-... +..++.+-.++..|.+++.|+.||.++.+|..+|+.+..+.....+..  +.|..+|+ ++
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            457778888887765443 222222223344677888899999999999999999999974444332  56666885 44


Q ss_pred             EEE
Q psy9319         151 AYA  153 (432)
Q Consensus       151 ~s~  153 (432)
                      +..
T Consensus       532 av~  534 (596)
T d1w6sa_         532 AIY  534 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.72  E-value=1.8  Score=38.62  Aligned_cols=94  Identities=16%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             EEEeecCcceee--EE-EccCCcCEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCeeEEEEee-CCCCEEEEEEeeCCCE
Q psy9319          34 FKFKEHHKLEEQ--NI-LKAHPVTCICIEFDPTGKYFAVGSKD-ALVSLWDAAELTCIRTFQR-LDWPVRAISFSHDGAL  108 (432)
Q Consensus        34 i~~~d~~~~~~~--~~-l~~h~~~V~~l~~spdg~~L~sgs~d-g~I~iwd~~~~~~~~~~~~-h~~~V~~i~~spdg~~  108 (432)
                      +.+||..++.-.  .. ...|.......++.++|.+++.|+.+ ..+.+||..+......-.. ....-.+++..+||.+
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            567888776432  22 23343334466788999999988765 5899999987654321111 1122345677789999


Q ss_pred             EEEEeCC------CeEEEEeCCCCc
Q psy9319         109 IASGSED------LTIDIAHVESGK  127 (432)
Q Consensus       109 l~sgs~d------g~V~vwd~~~~~  127 (432)
                      ++.|+.+      ..+.+||..+.+
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeeccccccccccceeeeecCCCCc
Confidence            8888743      368999988765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.73  E-value=11  Score=33.07  Aligned_cols=146  Identities=8%  Similarity=0.035  Sum_probs=91.6

Q ss_pred             ccCCCCcceeeeee--ecCCCceeEEEEeecCcceeeEEEccCCcCEEEEEEcCC--C-CEEEEEe---CCCeEEEEeCC
Q psy9319          11 GLNPRPSLYQSSVL--TDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT--G-KYFAVGS---KDALVSLWDAA   82 (432)
Q Consensus        11 ~~~p~~~~l~~s~s--~D~~~~~~~i~~~d~~~~~~~~~l~~h~~~V~~l~~spd--g-~~L~sgs---~dg~I~iwd~~   82 (432)
                      ..+++...++..|.  .+..+ .+.+++++.+. +..+.++||.+....+.+..+  . ..++.+.   ..+.+.|.++.
T Consensus       154 ~~d~~~kW~~l~GI~~~~~~i-~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig  231 (327)
T d1utca2         154 RTDAKQKWLLLTGISAQQNRV-VGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG  231 (327)
T ss_dssp             EECTTSCEEEEEEEEEETTEE-EEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECS
T ss_pred             EECCCCCEEEEEeEecCCCce-eEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcC
Confidence            44566666644433  34433 47888887654 466788999776665544322  1 2333332   22578888876


Q ss_pred             CCe---e------EEEEeeC---CCCEEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcEEEEEe-cCCceEEEEEccCCcE
Q psy9319          83 ELT---C------IRTFQRL---DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYL  149 (432)
Q Consensus        83 ~~~---~------~~~~~~h---~~~V~~i~~spdg~~l~sgs~dg~V~vwd~~~~~~~~~~~-~~~~V~~l~fspdg~~  149 (432)
                      +..   .      +..+...   ....-++..|+....++..+.-|.|.++|+.++.++..-. ....|...+-+.++.-
T Consensus       232 ~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~G  311 (327)
T d1utca2         232 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG  311 (327)
T ss_dssp             CCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE
T ss_pred             CCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCce
Confidence            421   1      1111111   3446678889888899999999999999999999998777 4566665555555445


Q ss_pred             EEEEECCCe
Q psy9319         150 LAYACDDKY  158 (432)
Q Consensus       150 l~s~s~d~~  158 (432)
                      +++...+|.
T Consensus       312 i~~VNr~Gq  320 (327)
T d1utca2         312 IIGVNRKGQ  320 (327)
T ss_dssp             EEEEETTSE
T ss_pred             EEEECCCCe
Confidence            555566665

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.37  E-value=17  Score=32.02  Aligned_cols=157  Identities=13%  Similarity=-0.034  Sum_probs=81.9

Q ss_pred             cccccCCCCcceeeeeeecCCC------ceeEEEEeecCccee-e--EEEccCC-----cCEEEEEE--cCCCCE-EEEE
Q psy9319           8 PLLGLNPRPSLYQSSVLTDISP------KQLDFKFKEHHKLEE-Q--NILKAHP-----VTCICIEF--DPTGKY-FAVG   70 (432)
Q Consensus         8 ~~l~~~p~~~~l~~s~s~D~~~------~~~~i~~~d~~~~~~-~--~~l~~h~-----~~V~~l~~--spdg~~-L~sg   70 (432)
                      .++.+.|++..+++++.....+      ..+.+.+.|..+... .  ..+.+..     -....+.+  .++|.. |++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            4567788887775554322111      125566666554322 1  1122111     11223332  456653 3333


Q ss_pred             e---CCCeEEEEeCCCCe--e--EEEEee-CCCCEEEEEEeeCCCEEEEEeC---C------------CeEEEEeCCCCc
Q psy9319          71 S---KDALVSLWDAAELT--C--IRTFQR-LDWPVRAISFSHDGALIASGSE---D------------LTIDIAHVESGK  127 (432)
Q Consensus        71 s---~dg~I~iwd~~~~~--~--~~~~~~-h~~~V~~i~~spdg~~l~sgs~---d------------g~V~vwd~~~~~  127 (432)
                      .   ...+|.+|++....  .  +.++.. .....+++.+..++.+++|-..   +            +...+|....+.
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            2   34578888765332  2  122221 1245789999999988887321   1            233444444444


Q ss_pred             EEEEEecCCceEEEEEccCCcEEEEEE-CCCeEEEEeC
Q psy9319         128 KVYDICIQAATFTVAWHPKQYLLAYAC-DDKYDRKQDC  164 (432)
Q Consensus       128 ~~~~~~~~~~V~~l~fspdg~~l~s~s-~d~~I~vwd~  164 (432)
                      .......-.....++++||+++|+.+. ..+.|+.|++
T Consensus       198 ~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         198 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence            433334455678899999998777664 5566555544