Psyllid ID: psy931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MLTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Secondary Structure (PSIPRED)
ccHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcccEEccccccHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEccc
Coil and Loop (DISEMBL)
MLTLREAyyrmfppeslgtmipksggdyayineafgplPAFLYMWVALFVIMPTGNAVTALTFAQYIlqpiwphcdppysAVRLLAAVITCLLTAINCynkyhltcsv
Flexible Loop (DISEMBL)
MLTLREAYYrmfppeslgtmIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Low Complexity Region (SEG)
MLTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Disordered region (IsUnstruct)
******AYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTC**
Disordered Region (DISOPRED)
******AYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Disordered Region (DISEMBL)
MLTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Disordered Region (DISPRO)
MLTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q92536	515	Y+L amino acid transporte	yes	N/A	0.768	0.161	0.614	2e-23
Q8BGK6	515	Y+L amino acid transporte	yes	N/A	0.768	0.161	0.578	5e-22
A1L3M3	510	Y+L amino acid transporte	N/A	N/A	0.768	0.162	0.566	9e-22
Q28I80	514	Y+L amino acid transporte	yes	N/A	0.768	0.161	0.566	3e-21
Q9Z1K8	510	Y+L amino acid transporte	no	N/A	0.768	0.162	0.578	4e-21
Q9R0S5	512	Y+L amino acid transporte	no	N/A	0.768	0.162	0.578	5e-21
Q59I64	468	Y+L amino acid transporte	no	N/A	0.759	0.175	0.573	6e-21
Q9UM01	511	Y+L amino acid transporte	no	N/A	0.768	0.162	0.566	1e-20
P63116	530	Asc-type amino acid trans	no	N/A	0.759	0.154	0.5	5e-18
P63115	530	Asc-type amino acid trans	no	N/A	0.759	0.154	0.5	5e-18

>sp|Q92536|YLAT2_HUMAN Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 60/83 (72%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI EAFG   AF+ +WV+L V+ PTG A+ A+TFA YI+QP +P C
Sbjct: 100 ELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSC 159

Query: 76  DPPYSAVRLLAAVITCLLTAINC 98
           DPPY A RLLAA   CLLT +NC
Sbjct: 160 DPPYLACRLLAAACICLLTFVNC 182

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial (RPE) cells.
Homo sapiens (taxid: 9606)

>sp|Q8BGK6|YLAT2_MOUSE Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=2 SV=1

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 59/83 (71%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI EAFG   AF+ +WV+L ++ PT  A+ A+TFA YI++P +P C
Sbjct: 100 ELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYIIKPSFPTC 159

Query: 76  DPPYSAVRLLAAVITCLLTAINC 98
           DPPY A RLLAA   CLLT +NC
Sbjct: 160 DPPYVACRLLAAACVCLLTFVNC 182

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial cells.

Mus musculus (taxid: 10090)

>sp|A1L3M3|YLAT2_XENLA Y+L amino acid transporter 2 OS=Xenopus laevis GN=slc7a6 PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 59/83 (71%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C
Sbjct: 95  ELGTTIKKSGASYAYILEAFGGFVAFIRLWTSLLIIEPTSQAVIAITFANYLVQPVFPSC 154

Query: 76  DPPYSAVRLLAAVITCLLTAINC 98
           +PPY A RL+AA   CL+T INC
Sbjct: 155 NPPYMASRLIAAACVCLITFINC 177

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus laevis (taxid: 8355)

>sp|Q28I80|YLAT2_XENTR Y+L amino acid transporter 2 OS=Xenopus tropicalis GN=slc7a6 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 58/83 (69%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C
Sbjct: 95  ELGTTIKKSGASYAYILEAFGDFVAFIRLWTSLLIIEPTSQAVIAITFANYLVQPVFPSC 154

Query: 76  DPPYSAVRLLAAVITCLLTAINC 98
            PPY A RL+AA   CL+T INC
Sbjct: 155 YPPYMASRLIAAACVCLITFINC 177

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus tropicalis (taxid: 8364)

>sp|Q9Z1K8|YLAT1_MOUSE Y+L amino acid transporter 1 OS=Mus musculus GN=Slc7a7 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 58/83 (69%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C
Sbjct: 93  ELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSC 152

Query: 76  DPPYSAVRLLAAVITCLLTAINC 98
             PY+A RLLAA   CLLT INC
Sbjct: 153 GAPYAAGRLLAAACICLLTFINC 175

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Mus musculus (taxid: 10090)

>sp|Q9R0S5|YLAT1_RAT Y+L amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a7 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 58/83 (69%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C
Sbjct: 95  ELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSC 154

Query: 76  DPPYSAVRLLAAVITCLLTAINC 98
             PY+A RLLAA   CLLT INC
Sbjct: 155 GAPYAAGRLLAAACICLLTFINC 177

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Rattus norvegicus (taxid: 10116)

>sp|Q59I64|YLAT2_DANRE Y+L amino acid transporter 2 OS=Danio rerio GN=slc7a6 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 59/82 (71%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI E+FG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C
Sbjct: 62  ELGTTITKSGASYAYILESFGGFIAFIRLWTSLLIIEPTSQAVIAITFANYLVQPLFPTC 121

Query: 76  DPPYSAVRLLAAVITCLLTAIN 97
           +PPYSA RL+AA   CLLT IN
Sbjct: 122 EPPYSASRLIAAACICLLTFIN 143

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Danio rerio (taxid: 7955)

>sp|Q9UM01|YLAT1_HUMAN Y+L amino acid transporter 1 OS=Homo sapiens GN=SLC7A7 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 58/83 (69%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGT I KSG  YAYI EAFG   AF+ +W +L +I PT  A+ A+TFA Y++QP++P C
Sbjct: 92  ELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSC 151

Query: 76  DPPYSAVRLLAAVITCLLTAINC 98
             PY+A RLLAA   CLLT INC
Sbjct: 152 FAPYAASRLLAAACICLLTFINC 174

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes.

Homo sapiens (taxid: 9606)

>sp|P63116|AAA1_RAT Asc-type amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a10 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 57/82 (69%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LG  IPKSGGDYAY+ E FG L  FL +W A+ ++ PT  AV ++TF+ Y+LQP++P+C
Sbjct: 101 ELGVAIPKSGGDYAYVTEIFGGLAGFLLLWSAVLIMYPTSLAVISMTFSNYVLQPVFPNC 160

Query: 76  DPPYSAVRLLAAVITCLLTAIN 97
            PP +A R+L+     LLT +N
Sbjct: 161 IPPATASRVLSMACLMLLTWVN 182

Sodium-independent, high affinity transport of small neutral D- and L-amino acids and amino acid-related compounds. May play a role in the modulation of glutamatergic transmission through mobilization of D-serine at the glutamatergic synapse.

Rattus norvegicus (taxid: 10116)

>sp|P63115|AAA1_MOUSE Asc-type amino acid transporter 1 OS=Mus musculus GN=Slc7a10 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 57/82 (69%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LG  IPKSGGDYAY+ E FG L  FL +W A+ ++ PT  AV ++TF+ Y+LQP++P+C
Sbjct: 101 ELGVAIPKSGGDYAYVTEIFGGLAGFLLLWSAVLIMYPTSLAVISMTFSNYVLQPVFPNC 160

Query: 76  DPPYSAVRLLAAVITCLLTAIN 97
            PP +A R+L+     LLT +N
Sbjct: 161 IPPATASRVLSMACLMLLTWVN 182

Sodium-independent, high affinity transport of small neutral D- and L-amino acids and amino acid-related compounds. May play a role in the modulation of glutamatergic transmission through mobilization of D-serine at the glutamatergic synapse.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
307205380	496	Large neutral amino acids transporter sm	0.787	0.171	0.858	2e-37
332025781	490	Large neutral amino acids transporter sm	0.787	0.173	0.847	2e-37
307184182	490	Large neutral amino acids transporter sm	0.787	0.173	0.847	6e-37
322779194	401	hypothetical protein SINV_09992 [Solenop	0.777	0.209	0.857	8e-37
66550796	489	PREDICTED: large neutral amino acids tra	0.787	0.173	0.847	2e-36
380016932	489	PREDICTED: LOW QUALITY PROTEIN: large ne	0.787	0.173	0.847	2e-36
350399823	489	PREDICTED: large neutral amino acids tra	0.787	0.173	0.858	4e-36
340712486	489	PREDICTED: large neutral amino acids tra	0.787	0.173	0.858	4e-36
157103807	506	amino acids transporter [Aedes aegypti]	0.833	0.177	0.766	7e-36
156548342	507	PREDICTED: large neutral amino acids tra	0.787	0.167	0.8	1e-35

>gi|307205380|gb|EFN83721.1| Large neutral amino acids transporter small subunit 2 [Harpegnathos saltator]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 82/85 (96%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYI++AFGPLPAFLY+WVALFV++PTGNA+TALTFAQYILQP+WP C
Sbjct: 94  ELGTMIPKSGGDYAYISDAFGPLPAFLYLWVALFVLVPTGNAITALTFAQYILQPVWPGC 153

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
            PPY+AVRLLAAV+TCLLTAINCYN
Sbjct: 154 TPPYAAVRLLAAVVTCLLTAINCYN 178

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025781|gb|EGI65938.1| Large neutral amino acids transporter small subunit 2 [Acromyrmex echinatior]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 82/85 (96%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYI++AFGPLPAFLY+WVALFV++PTGNA+TALTFAQYILQP+WP C
Sbjct: 88  ELGTMIPKSGGDYAYISDAFGPLPAFLYLWVALFVLVPTGNAITALTFAQYILQPVWPGC 147

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
           +PPY+A+RLLAAVITCLLT INCYN
Sbjct: 148 EPPYAAIRLLAAVITCLLTVINCYN 172

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184182|gb|EFN70702.1| Large neutral amino acids transporter small subunit 2 [Camponotus floridanus]

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 81/85 (95%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIP+SGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP WP C
Sbjct: 88  ELGTMIPRSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPAWPGC 147

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
           +PPY AVRLLAAVITCLLTAINCYN
Sbjct: 148 EPPYEAVRLLAAVITCLLTAINCYN 172

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779194|gb|EFZ09530.1| hypothetical protein SINV_09992 [Solenopsis invicta]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 81/84 (96%)

Query: 17  LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
           LGTMIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP+WP C+
Sbjct: 1   LGTMIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPVWPGCE 60

Query: 77  PPYSAVRLLAAVITCLLTAINCYN 100
           PPY AVRLLAAVITCLLT INCYN
Sbjct: 61  PPYVAVRLLAAVITCLLTVINCYN 84

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66550796|ref|XP_395404.2| PREDICTED: large neutral amino acids transporter small subunit 2-like [Apis mellifera]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 81/85 (95%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP+W  C
Sbjct: 87  ELGTMIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPVWHGC 146

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
            PPY+AVRLLAAVITCLLTAINCYN
Sbjct: 147 IPPYAAVRLLAAVITCLLTAINCYN 171

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016932|ref|XP_003692421.1| PREDICTED: LOW QUALITY PROTEIN: large neutral amino acids transporter small subunit 2-like [Apis florea]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 81/85 (95%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP+W  C
Sbjct: 87  ELGTMIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPVWHGC 146

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
            PPY+AVRLLAAVITCLLTAINCYN
Sbjct: 147 IPPYAAVRLLAAVITCLLTAINCYN 171

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399823|ref|XP_003485650.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus impatiens]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 81/85 (95%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYIN+AFGPLPAFLY++VALFV++PTGNA+TALTFAQYILQP+W  C
Sbjct: 87  ELGTMIPKSGGDYAYINDAFGPLPAFLYLYVALFVLVPTGNAITALTFAQYILQPVWHGC 146

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
            PPY+AVRLLAAVITCLLTAINCYN
Sbjct: 147 VPPYAAVRLLAAVITCLLTAINCYN 171

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712486|ref|XP_003394790.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus terrestris]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 81/85 (95%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYIN+AFGPLPAFLY++VALFV++PTGNA+TALTFAQYILQP+W  C
Sbjct: 87  ELGTMIPKSGGDYAYINDAFGPLPAFLYLYVALFVLVPTGNAITALTFAQYILQPVWHGC 146

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
            PPY+AVRLLAAVITCLLTAINCYN
Sbjct: 147 VPPYAAVRLLAAVITCLLTAINCYN 171

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103807|ref|XP_001648140.1| amino acids transporter [Aedes aegypti] gi|108869341|gb|EAT33566.1| AAEL014161-PA [Aedes aegypti]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYI EAFGPLPAFLY+WVAL +++P GNA+TA+TFAQY+LQP+WP C
Sbjct: 105 ELGTMIPKSGGDYAYIGEAFGPLPAFLYLWVALLILVPAGNAITAITFAQYLLQPLWPTC 164

Query: 76  DPPYSAVRLLAAVITCLLTAINCYNKYHLT 105
           +PPY +VRLLAA+ITCLLTAINCYN   +T
Sbjct: 165 EPPYESVRLLAALITCLLTAINCYNVKWVT 194

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548342|ref|XP_001603387.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Nasonia vitripennis]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 80/85 (94%)

Query: 16  SLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
            LGTMIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TA+TFAQYILQP+W  C
Sbjct: 105 ELGTMIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITAITFAQYILQPLWTGC 164

Query: 76  DPPYSAVRLLAAVITCLLTAINCYN 100
           +PPY A+RLLAAV+TC LTAINCYN
Sbjct: 165 EPPYEAIRLLAAVVTCFLTAINCYN 189

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0002778	499	mnd "minidiscs" [Drosophila me	0.777	0.168	0.738	2.3e-32
UNIPROTKB|E7EPZ8	229	SLC7A6 "Y+L amino acid transpo	0.796	0.375	0.609	5.3e-24
UNIPROTKB|Q92536	515	SLC7A6 "Y+L amino acid transpo	0.796	0.166	0.609	2.3e-23
UNIPROTKB|F1NX29	486	SLC7A7 "Uncharacterized protei	0.777	0.172	0.595	1.4e-22
UNIPROTKB|E9PLV9	289	SLC7A8 "Large neutral amino ac	0.759	0.283	0.573	2.1e-22
UNIPROTKB|F1MDA3	515	SLC7A6 "Uncharacterized protei	0.796	0.166	0.574	2.8e-22
MGI|MGI:2142598	515	Slc7a6 "solute carrier family	0.796	0.166	0.574	3.7e-22
RGD|1309193	515	Slc7a6 "solute carrier family	0.796	0.166	0.574	3.7e-22
UNIPROTKB|F1PA88	514	SLC7A6 "Uncharacterized protei	0.796	0.167	0.574	4.7e-22
UNIPROTKB|E2RAY2	530	SLC7A6 "Uncharacterized protei	0.796	0.162	0.574	5.2e-22

FB|FBgn0002778 mnd "minidiscs" [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 62/84 (73%), Positives = 72/84 (85%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGTMIPKSGGDYAYI  AFGPLPAFLY+WVAL +++PTGNA+TALTFA Y+L+P WP CD
Sbjct:    99 LGTMIPKSGGDYAYIGTAFGPLPAFLYLWVALLILVPTGNAITALTFAIYLLKPFWPSCD 158

Query:    77 PPYSAVRLLAAVITCLLTAINCYN 100
              P  AV+LLAA + C+LT INCYN
Sbjct:   159 APIEAVQLLAAAMICVLTLINCYN 182

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS;TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

UNIPROTKB|E7EPZ8 SLC7A6 "Y+L amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 53/87 (60%), Positives = 63/87 (72%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGT I KSG  YAYI EAFG   AF+ +WV+L V+ PTG A+ A+TFA YI+QP +P CD
Sbjct:   101 LGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCD 160

Query:    77 PPYSAVRLLAAVITCLLTAINC-YNKY 102
             PPY A RLLAA   CLLT +NC Y K+
Sbjct:   161 PPYLACRLLAAACICLLTFVNCAYVKW 187

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q92536 SLC7A6 "Y+L amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 53/87 (60%), Positives = 63/87 (72%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGT I KSG  YAYI EAFG   AF+ +WV+L V+ PTG A+ A+TFA YI+QP +P CD
Sbjct:   101 LGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCD 160

Query:    77 PPYSAVRLLAAVITCLLTAINC-YNKY 102
             PPY A RLLAA   CLLT +NC Y K+
Sbjct:   161 PPYLACRLLAAACICLLTFVNCAYVKW 187

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1NX29 SLC7A7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 267 (99.0 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 50/84 (59%), Positives = 59/84 (70%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LG  I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TF  YI+QPI+PHC+
Sbjct:    75 LGASIVKSGASYAYILEAFGAFVAFIRLWSSLLIIEPTTQAVIAITFGNYIVQPIFPHCE 134

Query:    77 PPYSAVRLLAAVITCLLTAINCYN 100
             PPY AVRL+AA   C LT INC N
Sbjct:   135 PPYDAVRLIAAACICSLTFINCVN 158

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PLV9 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LG  IPKSGGDY+Y+ + FG L  FL +W+A+ VI PT  AV ALTF+ Y+LQP++P C 
Sbjct:    96 LGVTIPKSGGDYSYVKDIFGGLAGFLRLWIAVLVIYPTNQAVIALTFSNYVLQPLFPTCF 155

Query:    77 PPYSAVRLLAAVITCLLTAINC 98
             PP S +RLLAA+   LLT +NC
Sbjct:   156 PPESGLRLLAAICLLLLTWVNC 177

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MDA3 SLC7A6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGT I KSG  YAYI EAFG   AF+ +W +L ++ PTG A+ A+TFA YI+QP +P C+
Sbjct:   101 LGTTITKSGASYAYILEAFGGFIAFIRLWASLLIVEPTGQAIIAITFANYIIQPSFPTCE 160

Query:    77 PPYSAVRLLAAVITCLLTAINC-YNKY 102
             PPY A RLLAA   CLLT +NC Y K+
Sbjct:   161 PPYLACRLLAAACMCLLTFVNCAYVKW 187

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

MGI|MGI:2142598 Slc7a6 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 6" [Mus musculus (taxid:10090)]

 Score = 264 (98.0 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGT I KSG  YAYI EAFG   AF+ +WV+L ++ PT  A+ A+TFA YI++P +P CD
Sbjct:   101 LGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYIIKPSFPTCD 160

Query:    77 PPYSAVRLLAAVITCLLTAINC-YNKY 102
             PPY A RLLAA   CLLT +NC Y K+
Sbjct:   161 PPYVACRLLAAACVCLLTFVNCAYVKW 187

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309193 Slc7a6 "solute carrier family 7 (amino acid transporter light chain, y+L system), member 6" [Rattus norvegicus (taxid:10116)]

 Score = 264 (98.0 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGT I KSG  YAYI EAFG   AF+ +WV+L ++ PT  A+ A+TFA YI++P +P CD
Sbjct:   101 LGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYIIKPSFPTCD 160

Query:    77 PPYSAVRLLAAVITCLLTAINC-YNKY 102
             PPY A RLLAA   CLLT +NC Y K+
Sbjct:   161 PPYVACRLLAAACVCLLTFVNCAYVKW 187

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PA88 SLC7A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 263 (97.6 bits), Expect = 4.7e-22, P = 4.7e-22
 Identities = 50/87 (57%), Positives = 61/87 (70%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGT I KSG  YAYI EAFG   AF+ +W +L ++ PT  A+ A+TFA YI+QP +P CD
Sbjct:   100 LGTTITKSGASYAYILEAFGGFIAFIRLWASLLIVEPTSQAIIAITFANYIIQPSFPTCD 159

Query:    77 PPYSAVRLLAAVITCLLTAINC-YNKY 102
             PPY A RLLAA   CLLT +NC Y K+
Sbjct:   160 PPYVACRLLAAACICLLTFVNCAYVKW 186

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|E2RAY2 SLC7A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 263 (97.6 bits), Expect = 5.2e-22, P = 5.2e-22
 Identities = 50/87 (57%), Positives = 61/87 (70%)

Query:    17 LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
             LGT I KSG  YAYI EAFG   AF+ +W +L ++ PT  A+ A+TFA YI+QP +P CD
Sbjct:   100 LGTTITKSGASYAYILEAFGGFIAFIRLWASLLIVEPTSQAIIAITFANYIIQPSFPTCD 159

Query:    77 PPYSAVRLLAAVITCLLTAINC-YNKY 102
             PPY A RLLAA   CLLT +NC Y K+
Sbjct:   160 PPYVACRLLAAACICLLTFVNCAYVKW 186

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92536	YLAT2_HUMAN	No assigned EC number	0.6144	0.7685	0.1611	yes	N/A
Q28I80	YLAT2_XENTR	No assigned EC number	0.5662	0.7685	0.1614	yes	N/A
Q8BGK6	YLAT2_MOUSE	No assigned EC number	0.5783	0.7685	0.1611	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	108
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	3e-29
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	7e-08
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	4e-06
PRK11357	445	PRK11357, frlA, putative fructoselysine transporte	5e-04
TIGR00908	442	TIGR00908, 2A0305, ethanolamine permease	0.003

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  108 bits (272), Expect = 3e-29
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query: 17  LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
           LGT IPKSGG+Y YI E FGPL AFL +W+ L VI P   AV AL FA YIL P++P C+
Sbjct: 100 LGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCE 159

Query: 77  PPYSAVRLLAAVITCLLTAINCYN 100
            P  A+RL+A +   LLT +NC +
Sbjct: 160 VPEWAIRLVAVLCVLLLTLVNCLS 183

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 17  LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
           L +  P++GG Y ++  AFG   AF+  W      +  G A ++   AQY+L   +P   
Sbjct: 54  LSSAFPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYIL-GLASSSSVAAQYLLSAFFPDLV 112

Query: 77  PPYSAVRLLAAVITCLLTAINCY 99
                   +A  I  +   IN  
Sbjct: 113 GNTWLTYGIAIAILIIFALINIR 135

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 17  LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALF--VIMPTGNAVTALTFAQYILQPIWPH 74
           L + IP +GG YAY   A GP   FL  W+ L   VI     A+ A ++  Y+  P    
Sbjct: 68  LSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLF-PGPGL 126

Query: 75  CDPPYSAVRLLAAVITCLLTAINCY 99
                  + L+A  +  LLT +N  
Sbjct: 127 LSIGPLLIILIALALIALLTLLNLR 151

Length = 466

>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 17  LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYI 67
           L T  P++G DY Y+  A     AFL  W + +       ++ AL     +
Sbjct: 66  LSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNL 116

Length = 445

>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 26/91 (28%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 11  MFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVAL--FVIMPTGNAVTALTFAQYIL 68
            F    L TMIP +GG Y +   AFGP   FL     L  F   P      A     Y  
Sbjct: 57  CFSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAP---PAIACFIGAYC- 112

Query: 69  QPIWPHCDPPYSAVRLLAAVITCLLTAINCY 99
                    P     L A V   +   IN  
Sbjct: 113 -----ESLFPVGPGWLAALVFYIVFIGINIL 138

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG1287|consensus	479		99.78
TIGR00911	501	2A0308 L-type amino acid transporter.	99.75
PRK10655	438	potE putrescine transporter; Provisional	99.71
PRK10644	445	arginine:agmatin antiporter; Provisional	99.7
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.68
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.68
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.67
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.67
PRK11021	410	putative transporter; Provisional	99.66
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.66
PRK10249	458	phenylalanine transporter; Provisional	99.65
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.65
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.65
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.64
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.64
PRK11387	471	S-methylmethionine transporter; Provisional	99.64
PRK10238	456	aromatic amino acid transporter; Provisional	99.63
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.63
PRK10746	461	putative transport protein YifK; Provisional	99.63
PRK15049	499	L-asparagine permease; Provisional	99.62
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.61
PRK10580	457	proY putative proline-specific permease; Provision	99.6
PRK10836	489	lysine transporter; Provisional	99.58
TIGR00930	953	2a30 K-Cl cotransporter.	99.57
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.56
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.56
TIGR00909	429	2A0306 amino acid transporter.	99.56
TIGR00913	478	2A0310 amino acid permease (yeast).	99.53
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.53
PRK15238	496	inner membrane transporter YjeM; Provisional	99.48
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.48
KOG1289|consensus	550		99.39
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.37
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.33
PHA02764	399	hypothetical protein; Provisional	99.29
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.27
KOG1286|consensus	554		99.23
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.22
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.9
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	98.01
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.94
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.11
PF03845	320	Spore_permease: Spore germination protein; InterPr	97.05
KOG2083|consensus	643		96.52
PRK15132	403	tyrosine transporter TyrP; Provisional	96.45
PRK13629	443	threonine/serine transporter TdcC; Provisional	96.35
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	96.17
PRK10483	414	tryptophan permease; Provisional	95.76
PRK09664	415	tryptophan permease TnaB; Provisional	95.67
KOG1288|consensus	945		91.43
KOG2082|consensus	1075		88.95
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	86.38
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	82.89

>KOG1287|consensus

Probab=99.78  E-value=1.2e-18  Score=128.83  Aligned_cols=106  Identities=50%  Similarity=0.845  Sum_probs=97.4

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      .+++.+...++||+||++++|++||+|.|..+.|||.++|...|..++...+...+..+.++++|....++|.++.|+..
T Consensus        55 ~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~  134 (479)
T KOG1287|consen   55 FCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVA  134 (479)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHH
Confidence            35778999999999999999999999999999999999999999998877788889999999999666678877788899


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      .++++..++++++.+|+.++|+..|+
T Consensus       135 ~~lla~~~l~~lt~~n~~~V~~a~~v  160 (479)
T KOG1287|consen  135 SKLLAAALLVLLTLINSFSVKWATRV  160 (479)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            99999999999999999999988764

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.75  E-value=1.9e-17  Score=124.00  Aligned_cols=106  Identities=45%  Similarity=0.746  Sum_probs=89.9

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++.+.+++.+++++||++++|++||.|+|+++.+||..||+.+|..+..+.+...+..+..+++|+.+.++|+...+++.
T Consensus        85 i~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~  164 (501)
T TIGR00911        85 VCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWA  164 (501)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH
Confidence            45677899999999999999999999999999999999999999987655566777888888998765445765555666


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..+++++++++.+.+|++|+|..+|+
T Consensus       165 ~~~i~~~~i~~~~~ln~~Gvk~~~~~  190 (501)
T TIGR00911       165 IRLVAVLCVLLLTLVNCLSVKWATRV  190 (501)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            77888889999999999999998874

>PRK10655 potE putrescine transporter; Provisional

Probab=99.71  E-value=9.4e-17  Score=118.36  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++.+.+++++++|+|+++++|++||.|.|+++.+||..||+.||.+++.+ .......+.+..+|+.. ++|. +.+++.
T Consensus        46 i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~y~~~-~~~~-~~~~~~  122 (438)
T PRK10655         46 VTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSL-LIANVAIAISAVGYGTE-LFGA-TLSPVQ  122 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hccc-ccchHH
Confidence            46778899999999999999999999999999999999999999998865 33444556677788876 4563 233455


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..+..++++++++.+|++|+|..+|+
T Consensus       123 ~~~~~~~~l~~~~~ln~~g~~~~~~i  148 (438)
T PRK10655        123 ICLATIGVLWLCTVANFGGARITGQI  148 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            56677788899999999999998874

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.70  E-value=1.9e-16  Score=117.05  Aligned_cols=103  Identities=17%  Similarity=0.275  Sum_probs=81.3

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+.+++.+++++||++++|++||.|+|+++.+||..||+.||.+|+.+. ............|... ++|..+ +++.
T Consensus        48 i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~  124 (445)
T PRK10644         48 VTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACW-IGNIAMVVIGVGYLSY-FFPILK-DPLV  124 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HhcccC-CcHH
Confidence            456788999999999999999999999999999999999999999998653 3344444455567664 456432 2344


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..++.++++++++.+|++|+|..+|+
T Consensus       125 ~~~~~~~~~~~~~~ln~~gvk~~~~i  150 (445)
T PRK10644        125 LTITCVVVLWIFVLLNIVGPKMITRV  150 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            55677788889999999999998874

>TIGR00908 2A0305 ethanolamine permease

Probab=99.68  E-value=3.4e-16  Score=115.49  Aligned_cols=97  Identities=26%  Similarity=0.314  Sum_probs=82.0

Q ss_pred             HHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931            4 LREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR   83 (108)
Q Consensus         4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~   83 (108)
                      .+.+++.+++++|+++++|++||.|.|+++.+||..||+.||.+++.+ ....+.++..+++|+.. ++|+.  +   ..
T Consensus        50 ~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~-~~p~~--~---~~  122 (442)
T TIGR00908        50 ATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEF-AFAPPAIACFIGAYCES-LFPVG--P---GW  122 (442)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhccC--c---hh
Confidence            445678899999999999999999999999999999999999999876 66778888999999986 45643  2   24


Q ss_pred             HHHHHHHHHHHHHHHhcccccccc
Q psy931           84 LLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        84 ~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..+.+++++++.+|++|+|..+|+
T Consensus       123 ~~~~~~~~~~~~ln~~g~~~~~~i  146 (442)
T TIGR00908       123 LAALVFYIVFIGINILGVGEAAKL  146 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Confidence            566677888899999999998874

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.68  E-value=3.4e-16  Score=116.59  Aligned_cols=104  Identities=23%  Similarity=0.229  Sum_probs=83.4

Q ss_pred             chHHHHHHhhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCC-CCh
Q psy931            2 LTLREAYYRMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD-PPY   79 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~-~~~   79 (108)
                      ++.+.+++.+++|+|+++++|+ +||.|+|+++.+||..||+.||.+++.+ .......+....+|+.. ++|..+ .++
T Consensus        49 i~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~p~~~~~~~  126 (473)
T TIGR00905        49 ITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGY-FFPLFGSGNP  126 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhhhhcCCCc
Confidence            4567788999999999999999 9999999999999999999999998765 44455566666777765 446332 223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           80 SAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ++..+.++.++++.+.+|++|+|..+|+
T Consensus       127 ~~~~~~~~~~~~~~~~ln~~Gi~~~~~i  154 (473)
T TIGR00905       127 VPSILGASVLLWVFTFLVLRGVRQAAFI  154 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            4556777888889999999999998874

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.67  E-value=4.9e-16  Score=113.74  Aligned_cols=100  Identities=24%  Similarity=0.341  Sum_probs=84.9

Q ss_pred             HHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHH
Q psy931            7 AYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLA   86 (108)
Q Consensus         7 al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~   86 (108)
                      .++.+++|+|+++++|++||.|.|+++.+||++||+.+|.+++.+ ....+......++|+...+.|+.++.+++...++
T Consensus        44 ~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  122 (426)
T PF13520_consen   44 FLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIVGWLYWVAY-ILSLASVASSFASYLLSLFGPDLNPSPWPQFLIA  122 (426)
T ss_dssp             HHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcccceeEEEe-eccccccccchhhhhhhccccccccccchheeee
Confidence            378999999999999999999999999999999999999999986 5566677788899998754444444456778889


Q ss_pred             HHHHHHHHHHHHhcccccccc
Q psy931           87 AVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        87 ~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ++++++.+.+|++|.|..+|+
T Consensus       123 ~~~~~~~~~l~~~g~~~~~~~  143 (426)
T PF13520_consen  123 IILILLFTLLNLLGIKLSGKI  143 (426)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHH
T ss_pred             ecccccceEeeechhhhhhhh
Confidence            999999999999999998874

...

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.67  E-value=6.5e-16  Score=114.07  Aligned_cols=102  Identities=19%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++++.+++.+++++||++++|++||.|+|++| +||.+||..||.+|... .......+....+|+.. ++|..+. +..
T Consensus        45 i~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~y~~~-~~p~~~~-~~~  120 (435)
T PRK10435         45 ISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFGFQTGVLYYHAN-WIGNLAIGITAVSYLST-FFPVLND-PIP  120 (435)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HccccCC-hHH
Confidence            45778999999999999999999999999999 99999999999988643 23445556777788876 4575432 234


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..++++.++++++.+|++|+|..+++
T Consensus       121 ~~~~~~~i~~~~~~ln~~gvk~~~~i  146 (435)
T PRK10435        121 AGIACIAIVWVFTFVNMLGGTWVSRL  146 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            45667778889999999999988764

>PRK11021 putative transporter; Provisional

Probab=99.66  E-value=6.7e-16  Score=113.06  Aligned_cols=101  Identities=21%  Similarity=0.234  Sum_probs=79.2

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++.+.+++.+++++|+++++|++||.|.|+++.+||+.||+.||.++..+ +...+.......+|... .+|..   ++.
T Consensus        40 i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~---~~~  114 (410)
T PRK11021         40 LLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVTGWLFLSVI-PVGLPAALQIAAGFGQA-LFGWS---SWQ  114 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HcCCC---Cch
Confidence            46778999999999999999999999999999999999999999998764 33333333344566665 34532   233


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ...++.+++++.+.+|++|+|.++|+
T Consensus       115 ~~~~~~~~~~~~~~ln~~Gv~~~~~~  140 (410)
T PRK11021        115 LLLAELLTLALLWLLNLRGASSSANL  140 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45667778888999999999998874

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.66  E-value=8.6e-16  Score=114.49  Aligned_cols=105  Identities=18%  Similarity=0.248  Sum_probs=80.9

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh-----C---C
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-----W---P   73 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-----~---~   73 (108)
                      +..+.+++++++++||++++|++||.|+|+++.+||..||++||.+++.+ ....+..+.....++...+     .   |
T Consensus        55 i~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (475)
T TIGR03428        55 VVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ-IVTAAAAAIALQVVLPNIWSGFQIIGEDP  133 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccCc
Confidence            45678899999999999999999999999999999999999999999876 4455555666555543211     0   1


Q ss_pred             CCC-C-ChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           74 HCD-P-PYSAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        74 ~~~-~-~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ++. + +.++..+++.+++++.+.+|++|+|..+|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i  169 (475)
T TIGR03428       134 TLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRV  169 (475)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            111 1 124566778888889999999999998774

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK10249 phenylalanine transporter; Provisional

Probab=99.65  E-value=1.6e-15  Score=112.75  Aligned_cols=99  Identities=18%  Similarity=0.211  Sum_probs=81.7

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+.+++++++++||++++|++||.|.|+++.+||..||+.||.+|+.+ ....+.+....+.|+.. ++|+.  +   
T Consensus        62 i~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~-~~~~~--~---  134 (458)
T PRK10249         62 VAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQY-WFPDV--P---  134 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCcC--c---
Confidence            45778999999999999999999999999999999999999999999876 44556666677778775 44532  2   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ......+++++.+.+|++|+|..+|+
T Consensus       135 ~~~~~~~~~~l~~~lN~~gv~~~~~i  160 (458)
T PRK10249        135 TWIWAAAFFIIINAVNLVNVRLYGET  160 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhhhH
Confidence            34456777889999999999998874

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.65  E-value=1.6e-15  Score=112.36  Aligned_cols=99  Identities=17%  Similarity=0.133  Sum_probs=81.1

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++++.+++.+++++||++++|++||.|.|++|.+||..||..||.+++.+ ....+.++...+.++.. +.|+.     .
T Consensus        33 i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-----~  105 (446)
T PRK10197         33 FAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW-VLVIPLEANIAAMILHS-WVPGI-----P  105 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccccC-----c
Confidence            46788999999999999999999999999999999999999999999875 44566666666666554 33422     2


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ...++.+++++++.+|++|+|..+++
T Consensus       106 ~~~~~~~~l~~~~~lN~~gv~~~~~i  131 (446)
T PRK10197        106 IWLFSLVITLALTGSNLLSVKNYGEF  131 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            45678888999999999999998764

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.65  E-value=2e-15  Score=111.76  Aligned_cols=99  Identities=19%  Similarity=0.250  Sum_probs=83.9

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+.+++++++++||++++|++||.|.|+++.+||..||+.||.+++.+ ....+.++...++++.. ++|+.  +   
T Consensus        53 i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~--~---  125 (452)
T TIGR01773        53 LAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQY-WFPDI--P---  125 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcC--c---
Confidence            45678899999999999999999999999999999999999999999876 55677788888888875 44642  2   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ....+++++++.+.+|++|+|..+|+
T Consensus       126 ~~~~~~~~~~~~~~~n~~gv~~~~~~  151 (452)
T TIGR01773       126 LWLFSLILTIVLTLTNLYSVKSYGEF  151 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHH
Confidence            44677788888999999999998764

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.64  E-value=1.9e-15  Score=111.67  Aligned_cols=102  Identities=18%  Similarity=0.161  Sum_probs=82.3

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++.+.+++.+++|+|+++++|++||.|.|+++.+||..||+.+|..+....+...+..+..+++|+.. ..|.   ++..
T Consensus        51 i~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~  126 (445)
T PRK11357         51 IGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLL  126 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHH
Confidence            35567899999999999999999999999999999999999999855433355677788888899875 3453   2234


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ...++..++.+++.+|++|+|..+|+
T Consensus       127 ~~~~~~~~~~~~~~ln~~gv~~~~~v  152 (445)
T PRK11357        127 GKFIAAGLIIAFMLLHLRSVEGGAAF  152 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            45667777888999999999988774

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.64  E-value=1.3e-15  Score=115.65  Aligned_cols=105  Identities=19%  Similarity=0.258  Sum_probs=84.4

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhC---CCC---
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIW---PHC---   75 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~---~~~---   75 (108)
                      ++++.+++.+++|+|+++++|++||.|.|+++.+||..||+.||.+++.+ ....+.++.++++|+...+.   ++.   
T Consensus        70 iagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~-~~~~a~va~~~s~yl~~ll~~~~~~~~~~  148 (557)
T TIGR00906        70 ISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEY-VIGTAAVARSWSAYFDELLNKQIGQFRRT  148 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            46778999999999999999999999999999999999999999999876 66778888888888875331   100   


Q ss_pred             ----CCCh--HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           76 ----DPPY--SAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        76 ----~~~~--~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                          ..+.  ....+++++++++.+.+|.+|+|.++|+
T Consensus       149 ~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v  186 (557)
T TIGR00906       149 YFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWV  186 (557)
T ss_pred             cccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHH
Confidence                0011  1235667788888999999999999874

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.64  E-value=2e-15  Score=112.40  Aligned_cols=98  Identities=14%  Similarity=0.234  Sum_probs=76.3

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+.+++++++++||++++|++||.|.|+++.+||..||+.||.+|+.+ ....+......+.++.. ++|+  .+   
T Consensus        56 i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~--~~---  128 (471)
T PRK11387         56 IGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTW-TVALGSSLTAAGFCMQY-WFPQ--VP---  128 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccCc--Cc---
Confidence            45678999999999999999999999999999999999999999999876 44555555556555543 3453  22   


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      ......+++++++.+|++|+|..+|
T Consensus       129 ~~~~~~~~~~~~~~in~~gvk~~~~  153 (471)
T PRK11387        129 VWPWCLLFCALIFGLNVVSTRFFAE  153 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            2233445567788999999998875

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.63  E-value=2.4e-15  Score=111.68  Aligned_cols=99  Identities=18%  Similarity=0.174  Sum_probs=82.0

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+.+++++++++|+++++|++||.|+|+++.+||..||+.||.+++.+ ....+.+..++++|+.. ++|+  .+   
T Consensus        53 i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~--~~---  125 (456)
T PRK10238         53 IAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQF-WYPE--IP---  125 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCc--Cc---
Confidence            45678899999999999999999999999999999999999999999987 55667777788888875 4453  23   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ......+++++++.+|++|+|..+|+
T Consensus       126 ~~~~~~i~~~~~~~lN~~gv~~~~~~  151 (456)
T PRK10238        126 TWVSAAVFFVVINAINLTNVKVFGEM  151 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            23445566788999999999988764

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.63  E-value=3.5e-15  Score=111.05  Aligned_cols=104  Identities=18%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             chHHHHHHhhHHHHhcccccccC-CcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCC-Ch
Q psy931            2 LTLREAYYRMFPPESLGTMIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDP-PY   79 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~-GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~-~~   79 (108)
                      ++++.+++++++++||++++|++ ||.|+|+++.|||..||+.||.+|+.+.. .....+....+++.. ++|.... ++
T Consensus        43 i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~~~-~~~~~~~~~~~~~~~-~~p~~~~~~~  120 (468)
T TIGR03810        43 ITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPFMGFISAWGYWLSAWL-GNVAYATLLFSTLGY-FFPIFGGGNN  120 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hcccccCCCc
Confidence            46778899999999999999997 59999999999999999999999987533 344445455566654 4564422 22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           80 SAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      .+....+..++++++.+|++|+|..+|+
T Consensus       121 ~~~~~~~~~~~~~~~~ln~~Gv~~~~~i  148 (468)
T TIGR03810       121 PPSIIGASVLLWCVHFLVLRGVEGAAFI  148 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3445667777888999999999988763

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10746 putative transport protein YifK; Provisional

Probab=99.63  E-value=3.6e-15  Score=110.99  Aligned_cols=99  Identities=13%  Similarity=0.149  Sum_probs=80.9

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +.++.+++++++++||++++|++||.|+|++|.+||..||..||.+|+.| ....+.+..+.++|+.. ++|+.  +   
T Consensus        51 i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~-~~p~~--~---  123 (461)
T PRK10746         51 IAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMW-MAVGISEITAIGVYVQF-WFPEM--A---  123 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-ccCCC--c---
Confidence            35677899999999999999999999999999999999999999999986 44556667788888875 45642  2   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ......+++++++.+|++|+|..+++
T Consensus       124 ~~~~~~~~~~~~~~lN~~gv~~~~~~  149 (461)
T PRK10746        124 QWIPALIAVALVALANLAAVRLYGEI  149 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            23445566788888999999998764

>PRK15049 L-asparagine permease; Provisional

Probab=99.62  E-value=4.3e-15  Score=111.57  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=78.1

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+.+++++.+++||++++|++||.|+|+++.+||..||+.||.+|+.| ....+....+.+.|... + +....  .+
T Consensus        69 i~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~~-~-~~~~~--~~  143 (499)
T PRK15049         69 ICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINW-AMTGIVDITAVALYMHY-W-GAFGG--VP  143 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-h-ccCCC--Cc
Confidence            45778999999999999999999999999999999999999999999876 33344444455666543 2 32221  12


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      .+..+.+++++++.+|++|+|..+|+
T Consensus       144 ~~~~~~~~~~l~~~iN~~gvk~~~~i  169 (499)
T PRK15049        144 QWVFALAALTIVGTMNMIGVKWFAEM  169 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557778889999999999998874

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.61  E-value=3.8e-15  Score=111.07  Aligned_cols=105  Identities=22%  Similarity=0.248  Sum_probs=83.1

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhC----chhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh---CCC
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFG----PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPH   74 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g----~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~   74 (108)
                      +..+..++++++++||++++|++||.|+|+++.+|    |..+|+.||.+++.+ ....+..+...++++...+   .|+
T Consensus        55 i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~  133 (482)
T TIGR00907        55 IAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQ-VAGTASTDLSVAQLILGIVSLTTPG  133 (482)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46778899999999999999999999999999876    577999999998875 5566777777888876532   122


Q ss_pred             --CCCChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           75 --CDPPYSAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        75 --~~~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                        +.++++....+.++++++++.+|++|+|..+|+
T Consensus       134 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~  168 (482)
T TIGR00907       134 REYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRI  168 (482)
T ss_pred             CCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHH
Confidence              223345556777788899999999999987664

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.60  E-value=1e-14  Score=108.22  Aligned_cols=99  Identities=18%  Similarity=0.260  Sum_probs=79.5

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+.+++++++++|+++++|++||.|.|+++.+||..||+.||.+++.+ ....+....+++.|... ++|+.  +   
T Consensus        50 i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~---  122 (457)
T PRK10580         50 IGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEI-LIVAIADVTAFGIYMGV-WFPTV--P---  122 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCC--C---
Confidence            45678899999999999999999999999999999999999999998875 44556666778888765 44532  2   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      .....+.++++.+.+|++|+|..+|+
T Consensus       123 ~~~~~~~~~~l~~~ln~~gv~~~~~~  148 (457)
T PRK10580        123 HWIWVLSVVLIICAVNLMSVKVFGEL  148 (457)
T ss_pred             hHHHHHHHHHHHHHHHHccchhHHHH
Confidence            22335566778899999999988763

>PRK10836 lysine transporter; Provisional

Probab=99.58  E-value=2.4e-14  Score=107.11  Aligned_cols=99  Identities=19%  Similarity=0.192  Sum_probs=74.7

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +.++.+++++++|+||++++|++||.|.|+++.+||..||+.||.+++.+ ....+. ....+++..+.++|+.  +   
T Consensus        57 i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~~~-~~~~a~-~~~a~~~~~~~~~~~~--~---  129 (489)
T PRK10836         57 LIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNW-AVTIAV-DLVAAQLVMSWWFPDT--P---  129 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhhhcCCCC--c---
Confidence            46788999999999999999999999999999999999999999999865 444443 3333444333344532  2   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ....+.+++.+++.+|++|+|..+++
T Consensus       130 ~~~~~~~~~~~~~~lN~~gv~~~~~~  155 (489)
T PRK10836        130 GWIWSALFLGVIFLLNYISVRGFGEA  155 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            22345566677889999999987763

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.57  E-value=1.3e-14  Score=115.65  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=88.2

Q ss_pred             chHHHHHHhhHHHHhcccc-cccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCC-----
Q psy931            2 LTLREAYYRMFPPESLGTM-IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC-----   75 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~-~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-----   75 (108)
                      ++.+++++.++||+|+++. +|++||.|.|++|.+||..||..||..++.. ....+..+.++++|+...+ +..     
T Consensus       119 la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf-~~~~~~~~  196 (953)
T TIGR00930       119 LCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLL-RENGSKIM  196 (953)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-hhcccccc
Confidence            5678899999999999998 9999999999999999999999999998875 6788999999999998753 321     


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           76 DPPYSAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        76 ~~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..+.....+++.+++++++++|++|+|..+|+
T Consensus       197 ~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~  228 (953)
T TIGR00930       197 VDPINDIRIYGTVTVVVLLGISFAGMEWENKA  228 (953)
T ss_pred             cCccccchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            11222356788899999999999999998874

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.56  E-value=2.4e-14  Score=107.76  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=72.7

Q ss_pred             HHHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHhhhCCCCCCChHHHH
Q psy931            7 AYYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAV--TALTFAQYILQPIWPHCDPPYSAVR   83 (108)
Q Consensus         7 al~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~--~a~~~~~y~~~~~~~~~~~~~~~~~   83 (108)
                      .++.+++++||++++| ++||.|+|+++.+||++||+.+|.+|+.+.....+.  ...+...|...  +|+.+.+++...
T Consensus        47 ~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~  124 (507)
T TIGR00910        47 FIPVALCAAEMATVDGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK--FPALNEDPIIKF  124 (507)
T ss_pred             HHHHHHHHHHHHcccCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhccCcHHHH
Confidence            4668999999999997 999999999999999999999998887542211221  12233345442  244433445555


Q ss_pred             HHHHHHHHHHHHHHHhcccccccc
Q psy931           84 LLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        84 ~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      +..++++++++++|++|+|..+|+
T Consensus       125 i~~l~i~~~~t~~n~~G~k~~~~i  148 (507)
T TIGR00910       125 IAALIIFWALAFSQFGGTKRTAKI  148 (507)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHH
Confidence            666778889999999999998874

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.56  E-value=3.1e-14  Score=106.08  Aligned_cols=100  Identities=19%  Similarity=0.153  Sum_probs=68.4

Q ss_pred             HHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHhh--hCCCCCCChHH
Q psy931            7 AYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMP---TGNAVTALTFAQYILQP--IWPHCDPPYSA   81 (108)
Q Consensus         7 al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~---~~~a~~a~~~~~y~~~~--~~~~~~~~~~~   81 (108)
                      .++.+++++||++++|++||.|.|+++.+||++||+.+|.+|..+..   ...+..+..+ .|....  ..+....+.+.
T Consensus        44 ~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  122 (474)
T TIGR03813        44 LVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSL-AFIGPEATVDESLAGNKLY  122 (474)
T ss_pred             HHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCccccCcccccccHH
Confidence            35799999999999999999999999999999999999999886422   1111111111 122110  01122122344


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ...+.++++++.+.+|++|+|..+|+
T Consensus       123 ~~~~~l~~~~~~~~in~~gv~~~~~i  148 (474)
T TIGR03813       123 VLVSVLFVYWLATFIALRGVAAFTKV  148 (474)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            44566677778899999999988764

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00909 2A0306 amino acid transporter

Probab=99.56  E-value=2.6e-14  Score=105.00  Aligned_cols=104  Identities=26%  Similarity=0.343  Sum_probs=83.3

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC--CCCCh
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH--CDPPY   79 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--~~~~~   79 (108)
                      ++.+.+++.+++++|+++++|++||.|.|+++.+||..||+.+|.+++.+ ....+..+..+++|+...+ +.  .+.|.
T Consensus        44 i~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~-~~~~~~~~~  121 (429)
T TIGR00909        44 LAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFL-PGVGLDLPA  121 (429)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHccccCch
Confidence            35667788999999999999999999999999999999999999999876 6678888888899987643 42  11121


Q ss_pred             HH---------HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           80 SA---------VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        80 ~~---------~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      +.         ....++.++++++.+|++|+|..+|+
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~  158 (429)
T TIGR00909       122 VLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV  158 (429)
T ss_pred             hhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            11         11346778899999999999998875

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.53  E-value=9.5e-14  Score=103.43  Aligned_cols=99  Identities=13%  Similarity=0.064  Sum_probs=76.4

Q ss_pred             chHHHHHHhhHHHHhcccccccCC-cchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSG-GDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS   80 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~G-G~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~   80 (108)
                      +.++.+++++++++||++++|++| |.|.|+++.+||..||++||.+++.+ ....+......++++.. +.|+.  +. 
T Consensus        44 i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~~-  118 (478)
T TIGR00913        44 IMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQW-LIVLPLELVTASMTIQY-WTDKV--NP-  118 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCCC--CH-
Confidence            356778999999999999999655 56679999999999999999999986 55677778888888764 33422  21 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           81 AVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        81 ~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                        .....+++++.+++|++|+|..+|+
T Consensus       119 --~~~~~~~~~~~~~in~~gv~~~~~~  143 (478)
T TIGR00913       119 --AVWIAIFYVFIVIINLFGVKGYGEA  143 (478)
T ss_pred             --HHHHHHHHHHHHHHHHhcchHHHHH
Confidence              1222345567889999999998764

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.53  E-value=7.7e-14  Score=102.75  Aligned_cols=103  Identities=25%  Similarity=0.335  Sum_probs=86.0

Q ss_pred             hHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC---CCCCh
Q psy931            3 TLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---CDPPY   79 (108)
Q Consensus         3 ~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~   79 (108)
                      ..+...+.+++++|+++.+|++||.|.|+++.+||+.+|..+|.+++.+ ....+..+...++++.. ++|.   ...+.
T Consensus        54 ~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  131 (466)
T COG0531          54 AGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSY-LFPGPGLLSIGP  131 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcchhhcCCc
Confidence            4566677799999999999999999999999999999999999999976 66777888888887775 4453   22222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           80 SAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      +...+++.+++++.+.+|++|+|..+|+
T Consensus       132 ~~~~~~~~~~~~~~~~ln~~G~~~~~~~  159 (466)
T COG0531         132 LLIILIALALIALLTLLNLRGIKASAKI  159 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            5678889999999999999999998774

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.48  E-value=3.7e-13  Score=100.95  Aligned_cols=103  Identities=16%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             HHHHHhhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHhhh-CCC---CC
Q psy931            5 REAYYRMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTA---LTFAQYILQPI-WPH---CD   76 (108)
Q Consensus         5 ~~al~~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a---~~~~~y~~~~~-~~~---~~   76 (108)
                      ...++.+++++||++++|+ +||.|+|+++.+||++||+.+|.++..+........+   ......+.... .+.   .+
T Consensus        49 ~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (496)
T PRK15238         49 LFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLG  128 (496)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhc
Confidence            3357799999999999997 8999999999999999999999877654221111111   11111111100 000   00


Q ss_pred             -CChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           77 -PPYSAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        77 -~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                       .++.....+++..+++++.+|.+|+|.++|+
T Consensus       129 ~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i  160 (496)
T PRK15238        129 LNSTQVVGILAVIWMILVTFVASKGINKIAKV  160 (496)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence             1112233556666678999999999998874

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.48  E-value=4.5e-13  Score=99.89  Aligned_cols=99  Identities=11%  Similarity=0.121  Sum_probs=79.4

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +..+..++++.+++|+++..|+.|+.|.|+++.+||..||+.||.+++.+ ....+.++.+++.|+.. ++|+.  +   
T Consensus        61 i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~-~~p~~--~---  133 (469)
T PRK11049         61 IIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQF-WFPDL--S---  133 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC--c---
Confidence            34567789999999999999999999999999999999999999999876 33445566777888875 45643  2   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ....+.+++++++.+|++|+|..+|+
T Consensus       134 ~~~~~~~~~~~~~~iN~~g~~~~~~i  159 (469)
T PRK11049        134 DWVASLAVVLLLLSLNLATVKMFGEM  159 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            23445567788899999999998774

>KOG1289|consensus

Probab=99.39  E-value=9.4e-13  Score=98.60  Aligned_cols=105  Identities=20%  Similarity=0.276  Sum_probs=90.4

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHH----HhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh---CCC
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINE----AFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPH   74 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~----~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~   74 (108)
                      ++.+..+|++++.+|++|.+|++||.|.|+..    .++|..+|++||.+.+++ ....++...+.++.+....   .|+
T Consensus        91 Ia~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~-~~~~aSi~~S~A~~i~~~v~l~np~  169 (550)
T KOG1289|consen   91 IAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQ-ATGVASITYSLAQLILGAVSLTNPN  169 (550)
T ss_pred             HHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHhhcCCC
Confidence            56788899999999999999999999999985    788899999999998876 6788888999998887642   366


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           75 CDPPYSAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        75 ~~~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      +.+++++...+...+..+..++|....|..+|+
T Consensus       170 y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I  202 (550)
T KOG1289|consen  170 YEPTNYHQFGVFEAILFVHGLLNSLPTRVLARI  202 (550)
T ss_pred             CcccceEeehHHHHHHHHHHHHhcCCcHHHHHH
Confidence            666677888899999999999999999887764

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.37  E-value=5.2e-12  Score=93.13  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=87.5

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++++.+.++..+..|+...-|++|+..+|+++.+||++||+.||.||+.| .....++..+.+.|++. ++|+.     +
T Consensus        54 I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~-WfP~v-----P  126 (462)
T COG1113          54 IAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFW-VLVGIAELTAIGIYLQF-WFPDV-----P  126 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC-----c
Confidence            67888999999999999999999999999999999999999999999998 56777888999999997 56864     3


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      .++.+...+.+...+|+.++|..+.
T Consensus       127 ~Wv~al~~~~l~~~~NL~sVk~FGE  151 (462)
T COG1113         127 QWVFALAAVVLLLAVNLISVKVFGE  151 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888899999999999998764

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.33  E-value=8.4e-13  Score=98.42  Aligned_cols=104  Identities=17%  Similarity=0.236  Sum_probs=80.9

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh--CCCCCCCh
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI--WPHCDPPY   79 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~--~~~~~~~~   79 (108)
                      ++.+.+++.+.+++|+++++|++||.|.|++|.+||..||..||.+++.+ ....+.+....+.++.. +  +++...+.
T Consensus        37 i~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  114 (478)
T PF00324_consen   37 IAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSY-IAAIAAEATAAGSFLQF-WGYFPGLPSTW  114 (478)
T ss_pred             HHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHH-HHHHHhhhhhhhhhhcc-ccccccccccc
Confidence            56788999999999999999999999999999999999999999999876 55666666666655553 3  23321111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           80 SAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      .+..+++.+.+++.+.+|++|+|..+|+
T Consensus       115 ~~~~~~~~i~~~~~~~l~~~gv~~~~~~  142 (478)
T PF00324_consen  115 VWGILIAIIFILLITLLNLFGVRVSGKI  142 (478)
T ss_pred             cccchhhhhhhhhhhhhhhhhhhccchH
Confidence            1112457778889999999999999873

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PHA02764 hypothetical protein; Provisional

Probab=99.29  E-value=3.2e-12  Score=90.77  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVT   59 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~   59 (108)
                      ++++.+++.++||+|+++++|++||.|.|.+|.+||..|++.||..|..+ +.+.++.
T Consensus        54 LGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP~~GFLvG~a~WLtl-~~G~Pal  110 (399)
T PHA02764         54 IGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSSKFYTIFGISLWLTY-VLSQPIL  110 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCccHHHHHHHHHHHHH-Hhhcchh
Confidence            56788999999999999999999999999999999999999999998875 5555554

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.27  E-value=2.3e-11  Score=88.37  Aligned_cols=103  Identities=8%  Similarity=-0.100  Sum_probs=77.6

Q ss_pred             hHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHH
Q psy931            3 TLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAV   82 (108)
Q Consensus         3 ~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~   82 (108)
                      ....+++.+++++|+++++|++||.|+|+++.+||..+++.+|.+++.. .....+.....++++... ++....++.+.
T Consensus        37 ~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~-~~~~~ay~~~~~~~l~~~-~~~~~~~~~~~  114 (381)
T TIGR00837        37 LWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVL-YILTYAYISGGGSILSRL-IGEYFGFPWSA  114 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHccHHHHHHH-HHHhcCCCccH
Confidence            4567889999999999999999999999999999999999999988754 334555555666676653 23211111234


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccc
Q psy931           83 RLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        83 ~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ....+.+.+++..+|.+|+|..+|+
T Consensus       115 ~~~~~~~~~v~~~l~~~G~~~~~~v  139 (381)
T TIGR00837       115 RAIVLIFTVLFGSFVWLSTSAVDRI  139 (381)
T ss_pred             HHHHHHHHHHHHHHHHhchhHHHHH
Confidence            5566677778889999999988764

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>KOG1286|consensus

Probab=99.23  E-value=5.5e-11  Score=90.42  Aligned_cols=68  Identities=21%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             chHHHHHHhhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy931            2 LTLREAYYRMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQP   70 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~   70 (108)
                      +.+..+++.+.||+|++.++|+ +||.|.|+++.+||.+||..||.+++.| ....+.++.+.+.|+..+
T Consensus        72 i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w  140 (554)
T KOG1286|consen   72 IAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYW  140 (554)
T ss_pred             HHHHHHHHHHHHHHHHheecccccccceeeeeeeeCcHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH
Confidence            3467899999999999999999 5999999999999999999999999987 678999999999999874

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.22  E-value=1.5e-10  Score=86.94  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      +.+...++++.+..||++.+|.+|+..+|+.|-.+|-.||..||.||+.| ....+.+-.+.+..++. ++|+. .|   
T Consensus        86 i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~w-~v~~~~El~aa~~vi~y-W~p~~-v~---  159 (541)
T COG0833          86 IIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGWNYWLNW-AVTLPLELTAASLVIQY-WFPDT-VP---  159 (541)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCchHHHHHHHHHHHHH-HHHhhHHHHHHHHhhhh-hcCCC-CC---
Confidence            45678899999999999999999999999999999999999999999998 66788877777766665 55643 22   


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLT  105 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~  105 (108)
                      ......++..+.+++|++++|..+
T Consensus       160 ~~~w~~iF~~~i~~iN~~~Vk~fG  183 (541)
T COG0833         160 PWIWIAIFLVLIFLLNLFGVKGFG  183 (541)
T ss_pred             hHHHHHHHHHHHHHHHHhcccccc
Confidence            344455677888999999999876

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.90  E-value=1.9e-08  Score=72.60  Aligned_cols=99  Identities=12%  Similarity=0.055  Sum_probs=77.0

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++++.+++.+++++|+++++|+. +.++|.++.+||..|++.+|.+... .....+.....+++++.....|+  .   +
T Consensus        42 l~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--t---p  114 (359)
T TIGR00912        42 LGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGRLLSILFILY-FFLIAAYLIRIFADFIKTYLLPR--T---P  114 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC--C---C
Confidence            46777889999999999999987 6999999999999999999998764 35555566667777776533343  1   2


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ...+.+..++++...|..|.|..+|+
T Consensus       115 ~~~~~l~~l~~~~~~~~~Gi~~i~r~  140 (359)
T TIGR00912       115 IIVIIILIIIVSIYIVRKGIEVLLRT  140 (359)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            45566777778888899999988774

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=98.01  E-value=7.9e-05  Score=54.84  Aligned_cols=84  Identities=13%  Similarity=0.233  Sum_probs=58.3

Q ss_pred             ccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHH
Q psy931           20 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTG----NAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTA   95 (108)
Q Consensus        20 ~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~----~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~l~~~   95 (108)
                      +.|++||.|++.++.+||+.|++.+|...+...|..    .+..+.-++  +. .++|+.. +.....+.+++...+...
T Consensus        49 av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~--i~-p~~~~~~-~~~~l~i~siiff~i~~~  124 (378)
T TIGR00796        49 ALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLFAIPRTATVSFEMG--IA-PLLHSPT-SLLALFIFSLIFFAVVLL  124 (378)
T ss_pred             eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH--HH-hccCccc-chHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999876555654    455554444  32 2445321 122334455666667777


Q ss_pred             HHHhcccccccc
Q psy931           96 INCYNKYHLTCS  107 (108)
Q Consensus        96 iN~~g~k~~~~i  107 (108)
                      +|+++.|...++
T Consensus       125 l~~~~~k~~~~i  136 (378)
T TIGR00796       125 LSLNPSKLIDRV  136 (378)
T ss_pred             HHcCcccHHHHh
Confidence            999998887653

transmembrane helical spanners.

>TIGR00814 stp serine transporter

Probab=97.94  E-value=0.00012  Score=54.19  Aligned_cols=95  Identities=15%  Similarity=0.072  Sum_probs=62.0

Q ss_pred             hhHHHHhccccccc-CCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCC--CCCCChHHHHHHH
Q psy931           10 RMFPPESLGTMIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWP--HCDPPYSAVRLLA   86 (108)
Q Consensus        10 ~a~~~ael~s~~P~-~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--~~~~~~~~~~~i~   86 (108)
                      .+..+.|.....|. ..+.++++++.+||..|.+.++.+++.. .....+++...++.+.+.+..  ..+.|  ...+.+
T Consensus        50 ~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~-~~i~~aY~~~~~~~~~~fl~~~~~~~~p--~~~i~~  126 (397)
T TIGR00814        50 GHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAI-YPILLIYSVAITNDSASFLVNQLGTAPP--LRGLLS  126 (397)
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCc--HHHHHH
Confidence            33344555444454 7899999999999999999999998764 334455554444444432211  11222  234566


Q ss_pred             HHHHHHHHHHHHhcccccccc
Q psy931           87 AVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        87 ~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..+++....++..|.|...|+
T Consensus       127 lilv~il~~iv~~G~~~i~r~  147 (397)
T TIGR00814       127 LALILILVAIMSFGEKLLFKI  147 (397)
T ss_pred             HHHHHHHHHHHHhcHHHHHHH
Confidence            677777788999999988774

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.11  E-value=0.0044  Score=45.88  Aligned_cols=101  Identities=9%  Similarity=0.009  Sum_probs=66.8

Q ss_pred             HHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931            4 LREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR   83 (108)
Q Consensus         4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~   83 (108)
                      -..++..++.++|.....|+..+.-.-+++.+||..+++.+..+.+..+. ...++....++.+.+.+ +.....+....
T Consensus        44 w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~-ll~AYisg~g~~~~~~l-~~~~~~~~~~~  121 (394)
T PF03222_consen   44 WPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYA-LLVAYISGGGSILSSLL-GNQLGTDLSPW  121 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHccHHHHHHHH-HHhcCCCCcHH
Confidence            35667888999999999999999999999999999999998887765433 44455566666665533 32111112233


Q ss_pred             HHHHHHHHHHHHHHHhccccccc
Q psy931           84 LLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        84 ~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      .....+..++..+-+.|.|...|
T Consensus       122 ~~~~~f~~i~~~iv~~g~~~v~~  144 (394)
T PF03222_consen  122 LSSLLFTIIFGGIVYFGTKAVDR  144 (394)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHH
Confidence            44444455555555667665544

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.05  E-value=0.014  Score=41.67  Aligned_cols=98  Identities=9%  Similarity=0.007  Sum_probs=72.8

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++...++...+.+..+.+++|+ -...++.++.+||..|.+.+..+.+. .....+.....+++.+.....|+.     +
T Consensus        40 l~~~~~l~~~~l~~~l~~~~p~-~~l~~~~~~~~Gk~lg~ii~~~~~l~-~l~~~~~~lr~~~~~i~~~~lp~T-----P  112 (320)
T PF03845_consen   40 LGGLIGLLLALLIYYLLKRFPG-KTLVEISEKLFGKWLGKIINLLYILY-FLLISALVLREFSEFIKTYLLPET-----P  112 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcC-----C
Confidence            4677888899999999999988 45679999999999999998776653 355666667777777776555542     2


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      ...+...+++........|.+..+|
T Consensus       113 ~~~i~~~~ll~~~y~a~~G~e~i~R  137 (320)
T PF03845_consen  113 IWVIILLFLLVAAYAARKGIEVIAR  137 (320)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4555556666777777777777666

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>KOG2083|consensus

Probab=96.52  E-value=0.0054  Score=47.49  Aligned_cols=102  Identities=20%  Similarity=0.141  Sum_probs=80.4

Q ss_pred             chHHHHHHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931            2 LTLREAYYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS   80 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~   80 (108)
                      ++..+++..+++-.-.+++-- +.||.|.-..|..||..|--.|-++.++. ...++....++++-+...+ ...  +.+
T Consensus        71 ~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~efggsigiIy~f~~-aVa~am~~vgfaEsv~~l~-~~~--s~~  146 (643)
T KOG2083|consen   71 LTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPEFGGSIGIIYAFAN-AVATAMYVVGFAESVAHLF-ETE--SKE  146 (643)
T ss_pred             HHHHHHHHHHHhHheeeecceeccCcEEEEEEecccccccchhHHHHHHHH-HHHHHHhhhhHHHHHHHHH-Hhc--cHH
Confidence            456778888888888888776 57999999999999998888888888874 6678888899998888754 432  223


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           81 AVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        81 ~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      -.+.++.+..+++..+|..|+|+..|.
T Consensus       147 ~i~gi~~vt~~ill~i~~ag~~w~~k~  173 (643)
T KOG2083|consen  147 MIDGIGSVTVLILLAINVAGVEWEAKL  173 (643)
T ss_pred             HhcchhHHHHHHHHHhhhccchhHHHH
Confidence            345588888899999999999987763

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=96.45  E-value=0.026  Score=42.09  Aligned_cols=96  Identities=10%  Similarity=0.073  Sum_probs=60.6

Q ss_pred             HHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh---CCCCCCChHHH
Q psy931            6 EAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPHCDPPYSAV   82 (108)
Q Consensus         6 ~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~~~~~~~~~   82 (108)
                      .+...++.++|.....|+..+..+-+++.+||..+++....+.+..++ ...++....++.+.+.+   .+ .+.++   
T Consensus        46 ~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~-ll~AYisg~g~il~~~l~~~~~-~~i~~---  120 (403)
T PRK15132         46 LMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYA-LTAAYISGAGELLASSISDWTG-ISMSP---  120 (403)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHHHHhcc-CCCCh---
Confidence            466778889999889888888999999999999999998888775433 45555555344443322   22 22222   


Q ss_pred             HHHHHHHHHHHHHHHHhccccccc
Q psy931           83 RLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        83 ~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      ....+.+.++...+-+.|.|...|
T Consensus       121 ~~~~l~F~~~~~~iv~~g~~~v~~  144 (403)
T PRK15132        121 TAGVLLFTLVAGGVVCVGTSSVDL  144 (403)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHH
Confidence            223333444444455556665544

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=96.35  E-value=0.057  Score=40.76  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             HHHHHhhHHHHhccccc-ccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931            5 REAYYRMFPPESLGTMI-PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR   83 (108)
Q Consensus         5 ~~al~~a~~~ael~s~~-P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~   83 (108)
                      ..+++.++.+.|..... |+..+.-+-+++.+||..+.+.+..+.+..++ .+.++...+.+.+.+.+......++.+..
T Consensus        61 p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~-ll~aY~~~itn~l~sfl~~ql~~~~~~r~  139 (443)
T PRK13629         61 PIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICP-LLWIYGVTITNTFMTFWENQLGFAPLNRG  139 (443)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCcCCccHH
Confidence            45566778889999988 65666778889999999999999888876544 34444555555554421000111111245


Q ss_pred             HHHHHHHHHHHHHHHhccccccc
Q psy931           84 LLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        84 ~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      +.+.+++.++..+-..|.|...|
T Consensus       140 l~slifv~~l~~iv~~G~~~v~k  162 (443)
T PRK13629        140 FVALFLLLLMAFVIWFGKDLMVK  162 (443)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHH
Confidence            66777777777777788776655

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=96.17  E-value=0.06  Score=40.20  Aligned_cols=103  Identities=7%  Similarity=0.016  Sum_probs=69.2

Q ss_pred             chHHHHHHhhHHHHhcccccccCC-cchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC-CCCCh
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSG-GDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH-CDPPY   79 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~G-G~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~~~~   79 (108)
                      ++...+++..+.+.|.....|+.. +...=+++.+||.++++.+-.+.+.. .....++....++-+.+.+ +. ...++
T Consensus        48 i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~-~~~~~aY~~~~g~~l~~~~-~~~~~~~~  125 (415)
T COG0814          48 IAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFAL-YGLLVAYIVGIGNLLASFL-GNQFGLNP  125 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHH-HHHHHHHHhcchhHHHHHH-HhhcccCC
Confidence            355678889999999999999995 99999999999999999998777653 3345556666666666532 32 11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccc
Q psy931           80 SAVRLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      ....+..+++...+..+...|.+...|
T Consensus       126 ~~r~~~~lif~~~~~~l~~~~~~~~lk  152 (415)
T COG0814         126 LPRKLGSLIFALVLAFLSWLGTLAVLK  152 (415)
T ss_pred             cchHHHHHHHHHHHHHHHHhchhHHHH
Confidence            234444455555555566666665443

>PRK10483 tryptophan permease; Provisional

Probab=95.76  E-value=0.12  Score=38.83  Aligned_cols=100  Identities=5%  Similarity=-0.144  Sum_probs=63.3

Q ss_pred             HHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHH
Q psy931            4 LREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVR   83 (108)
Q Consensus         4 ~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~   83 (108)
                      -+.++..++...|....+|+.-+.-+-+|+..||....+.+..+.+..+. ...++....++.+.+.+ ++.+. +.+..
T Consensus        52 W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~-Ll~AYisg~g~il~~~l-~~~~~-~i~~~  128 (414)
T PRK10483         52 WFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYI-LTYAYISASGSILHHTF-AEMSL-NVPAR  128 (414)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHhCcHHHHHHHH-HhcCC-CCcHH
Confidence            35677888889999999999999999999999998665544444433222 34444445555555533 32111 11234


Q ss_pred             HHHHHHHHHHHHHHHhccccccc
Q psy931           84 LLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        84 ~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      ..++.+..++..+-+.|.|...|
T Consensus       129 ~~~llF~~~~~~iv~~gt~~vd~  151 (414)
T PRK10483        129 AAGFGFALLVAFVVWLSTKAVSR  151 (414)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHH
Confidence            45556666666777777776655

>PRK09664 tryptophan permease TnaB; Provisional

Probab=95.67  E-value=0.15  Score=38.24  Aligned_cols=99  Identities=7%  Similarity=-0.026  Sum_probs=62.7

Q ss_pred             hHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC---CCCCh
Q psy931            3 TLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---CDPPY   79 (108)
Q Consensus         3 ~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~   79 (108)
                      +-+.++..++...|....+|+.-+.-+-+|+..||....+.+..+.+..+ +...++-..-++.+.+.+ +.   .+.+ 
T Consensus        49 ~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y-~Ll~AYisggG~il~~~l-~~~~~~~i~-  125 (415)
T PRK09664         49 AWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLY-ILTYAYISANGAIISETI-SMNLGYHAN-  125 (415)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHH-hhhccCCCc-
Confidence            34567788888999999999999999999999999755555444433322 234444445555555533 21   1222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccc
Q psy931           80 SAVRLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        80 ~~~~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                        ....++.+.+++..+-+.|.|...|
T Consensus       126 --~~~~~llF~~~~~~~v~~gt~~vd~  150 (415)
T PRK09664        126 --PRIVGICTAIFVASVLWISSLAASR  150 (415)
T ss_pred             --HHHHHHHHHHHHHHHHHhchhHHHH
Confidence              2334456666666666677766554

>KOG1288|consensus

Probab=91.43  E-value=0.34  Score=38.85  Aligned_cols=99  Identities=14%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             HHHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCC---------CC
Q psy931            7 AYYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---------CD   76 (108)
Q Consensus         7 al~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---------~~   76 (108)
                      -++..++.+.+++.=- +.||.|....|..||-.|--.|-+..++ ....++.....+.+-+..-+.++         .+
T Consensus       113 ~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf~a-nV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP  191 (945)
T KOG1288|consen  113 LLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFFVA-NVFNCAMNISGFVEPILDNFGKEAQGASGSQFLP  191 (945)
T ss_pred             HHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhhHH-HHhcchhhhhhhhHHHHHhcCccccCCcccccCC
Confidence            3444555666665443 5689999999999998887777665555 46778888888887777633211         12


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhccccccc
Q psy931           77 PPYSAVRLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        77 ~~~~~~~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                      +.+|+..+-+..+..++..+.+.|....+|
T Consensus       192 ~g~ww~fly~t~vl~l~~~vc~lGsalfAk  221 (945)
T KOG1288|consen  192 DGYWWRFLYTTLVLALCLIVCLLGSALFAK  221 (945)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence            335777777788888888888888877765

>KOG2082|consensus

Probab=88.95  E-value=0.57  Score=37.98  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=62.1

Q ss_pred             HHhhHHHHhcccccc-cCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCC------CC---
Q psy931            8 YYRMFPPESLGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC------DP---   77 (108)
Q Consensus         8 l~~a~~~ael~s~~P-~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~------~~---   77 (108)
                      ++.+.+.+-.++.=- .+||.|....|..||-.|-.+|-+..++. ....+.+.....+.+....+|..      +.   
T Consensus       161 mLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYLgt-T~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~  239 (1075)
T KOG2082|consen  161 MLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGT-TVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDE  239 (1075)
T ss_pred             HHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhhhh-HHHHHHHHHhHHHHHHHHHccHhhhcCccccccc
Confidence            344556666666433 58999999999999999988887655542 33334444444444443334421      00   


Q ss_pred             -C--hHHHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           78 -P--YSAVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        78 -~--~~~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                       .  ..-.++-+.+++++.+++-+.|+|..-|+
T Consensus       240 ~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~  272 (1075)
T KOG2082|consen  240 AAAMLNNLRVYGTVFLILMALIVFVGVKFVNKF  272 (1075)
T ss_pred             hhhhhcceehHHHHHHHHHHHHHHHHHHHHHHh
Confidence             0  12245667788888888888999876553

>TIGR00835 agcS amino acid carrier protein

Probab=86.38  E-value=10  Score=28.76  Aligned_cols=75  Identities=24%  Similarity=0.274  Sum_probs=40.7

Q ss_pred             CcchhhhHHHhC-chhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHhcccc
Q psy931           25 GGDYAYINEAFG-PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYH  103 (108)
Q Consensus        25 GG~y~y~~~~~g-~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~l~~~iN~~g~k~  103 (108)
                      ||+-.|.++..+ |+.|.+.+.. .+.+.......++.+.++.+.+.+ +   .|   ....++.+.++...+-.-|+|.
T Consensus       116 GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~-~---~~---~~v~~i~l~~l~~~vi~GGik~  187 (425)
T TIGR00835       116 GGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF-N---VP---KLVTGIVLTVLTALIIFGGLKR  187 (425)
T ss_pred             cChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc-C---Cc---HHHHHHHHHHHHHHHHhcCchH
Confidence            455588888765 6666665544 333323345666677776666422 2   22   3344545555555554447776


Q ss_pred             cccc
Q psy931          104 LTCS  107 (108)
Q Consensus       104 ~~~i  107 (108)
                      .+|+
T Consensus       188 Ia~v  191 (425)
T TIGR00835       188 IAKI  191 (425)
T ss_pred             HHHH
Confidence            6553

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=82.89  E-value=17  Score=27.90  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=54.1

Q ss_pred             HhhHHHHhcccccc-------cCCcchhhhHHHhCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931            9 YRMFPPESLGTMIP-------KSGGDYAYINEAFGPL-PAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS   80 (108)
Q Consensus         9 ~~a~~~ael~s~~P-------~~GG~y~y~~~~~g~~-~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~   80 (108)
                      .+.++=+-|+..|.       -.||+-.|.++.+|.+ .+-+.+...........+...+.+.++-+...+ +   .|  
T Consensus       109 at~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af-~---~~--  182 (452)
T COG1115         109 ATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAF-G---IP--  182 (452)
T ss_pred             HHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc-C---Cc--
Confidence            33344444666655       1478999999999864 444444222233222456677777777777643 3   12  


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccc
Q psy931           81 AVRLLAAVITCLLTAINCYNKYHLTC  106 (108)
Q Consensus        81 ~~~~i~~~~i~l~~~iN~~g~k~~~~  106 (108)
                       ....++.+.++...+-+-|+|.-+|
T Consensus       183 -~~~~gi~la~l~~~VI~GGi~rIa~  207 (452)
T COG1115         183 -PLVTGIVLALLVALVIFGGIKRIAK  207 (452)
T ss_pred             -HHHHHHHHHHHHHHHHHcchHHHHH
Confidence             4555666666667777777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	2e-09
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	1e-07
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	2e-05

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 17  LGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD 76
           +  + P  GG YAY    FGP   +       ++    GN    +    Y L   +P   
Sbjct: 63  MSFLDPSPGGSYAYARRCFGPFLGYQTNV-LYWLACWIGNIAMVVIGVGY-LSYFFPILK 120

Query: 77  PPYSAVRLLAAVITCLLTAINC 98
            P+    +   V+  +   +N 
Sbjct: 121 DPWVLT-ITCVVVLWIFVLLNI 141

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 17  LGTMIPKSGGDYAYINEAFGP-LPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHC 75
           LG  I  + G  A+I++A G  +         L++      A+ A  FA Y L  I  + 
Sbjct: 62  LGAKIVSNAGPIAFIHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLI--NA 118

Query: 76  DPPYSAVRLLAAVITCLLTAINCY 99
                 + +    I    TA+N +
Sbjct: 119 PINTFNIAITEIGIVAFFTALNFF 142

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 17  LGTMIP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-WPH 74
           + T+   + GG +A+++   GP   F  +    ++ +  G           +   + WP 
Sbjct: 64  MATVDGWEEGGVFAWVSNTLGPRWGFAAISF-GYLQIAIGFIPMLYFVLGALSYILKWPA 122

Query: 75  CDPPYSAVRLLAAVITCLLTAINC 98
            +       + A +I   L     
Sbjct: 123 LNEDPITKTIAALIILWALALTQF 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.64
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.62
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.57

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.64  E-value=7.9e-16  Score=111.57  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=88.2

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChHH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSA   81 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~   81 (108)
                      ++.+.+++.+++|+|+++++|++||.|+|+++.+||..||+.+|.+++.+ ....+..+..+++|+.. ++|+.+ ++++
T Consensus        48 i~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~  124 (445)
T 3l1l_A           48 VTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSY-FFPILK-DPWV  124 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT-TCGGGG-SHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HCcccc-ccHH
Confidence            45677899999999999999999999999999999999999999999875 55667788888999876 456532 3466


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccc
Q psy931           82 VRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        82 ~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ..+++++++++++.+|++|+|..+|+
T Consensus       125 ~~~~~~~~~~~~~~in~~g~~~~~~~  150 (445)
T 3l1l_A          125 LTITCVVVLWIFVLLNIVGPKMITRV  150 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            77888899999999999999998874

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.62  E-value=1.6e-15  Score=111.68  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=78.0

Q ss_pred             HHhhHHHHhccc--ccccCCcchhhhHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh-CCCCCCChHHHHH
Q psy931            8 YYRMFPPESLGT--MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-WPHCDPPYSAVRL   84 (108)
Q Consensus         8 l~~a~~~ael~s--~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-~~~~~~~~~~~~~   84 (108)
                      ++.+++++|+++  ++| +||.|+|+++.+||+.||+.+|.+++.+ ....+......++++...+ .|+.+++++...+
T Consensus        55 l~~al~~ael~s~~~~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  132 (511)
T 4djk_A           55 IPVGLCAAEMATVDGWE-EGGVFAWVSNTLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYILKWPALNEDPITKTI  132 (511)
T ss_dssp             HHHHHHHHHHHTTSCC----CHHHHHHHHHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHH
T ss_pred             HHHHHHHHHHcccccCC-CCChhhhHHhhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCcHHHHH
Confidence            458999999999  999 9999999999999999999999999875 4455666666677775432 4555555567888


Q ss_pred             HHHHHHHHHHHHHHhcccccccc
Q psy931           85 LAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        85 i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      ++++++++++.+|++|+|..+|+
T Consensus       133 ~~~~~~~~~~~in~~g~~~~~~~  155 (511)
T 4djk_A          133 AALIILWALALTQFGGTKYTARI  155 (511)
T ss_dssp             HHHHHHHHHHHHHHTCSSSHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHH
Confidence            89999999999999999998874

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.57  E-value=2.5e-14  Score=103.77  Aligned_cols=103  Identities=19%  Similarity=0.153  Sum_probs=85.6

Q ss_pred             chHHHHHHhhHHHHhcccccccCCcchhhhHHHhCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhCCCCCCChH
Q psy931            2 LTLREAYYRMFPPESLGTMIPKSGGDYAYINEAFGPLP-AFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS   80 (108)
Q Consensus         2 ~~~~~al~~a~~~ael~s~~P~~GG~y~y~~~~~g~~~-gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~   80 (108)
                      ++.+.+++.+++++|+++++|++||.|+|+++.+||+. +...+|.+++.+ ....+..+..+++|+... +|.. ++++
T Consensus        47 i~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~~-~~~~-~~~~  123 (444)
T 3gia_A           47 LSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSY-VISIALFAKGFAGYFLPL-INAP-INTF  123 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTCC-CCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hCCC-CchH
Confidence            45677899999999999999999999999999999963 444579888875 667888899999999874 4643 3456


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccc
Q psy931           81 AVRLLAAVITCLLTAINCYNKYHLTCS  107 (108)
Q Consensus        81 ~~~~i~~~~i~l~~~iN~~g~k~~~~i  107 (108)
                      +..+++.+++++++.+|++|+|..+|+
T Consensus       124 ~~~~~~~~~~~~~~~in~~g~~~~~~~  150 (444)
T 3gia_A          124 NIAITEIGIVAFFTALNFFGSKAVGRA  150 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            667888899999999999999998774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00