Psyllid ID: psy9333

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MLRLPILKCIQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKC
ccccccccEEEEcccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccHHHHHHHHHHHHHccccEEEEEcccccccccEEEEcccHHHHHHHHHcccccccccccccEEEEEEcccccccccccccEEEEEEEccccccEEEEEcccEEEcccccccccccccccccccccHHHHHccccccccccccEEEHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcEEEEccccccccccc
cccccccccEEEEcccccHHHHHHHHHHcEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccEEEccccHHHHHHHHHHccccEEEEcccccccccEEEEEccHHHHHHHHHHcccccccccccccEEEEEEEcccEEEcccEEEEEEEEEEEccccEEEEEEccccEEEEEEEccccccccccEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccHHEHEEEEEEEccccEEccccc
MLRLPILKCIQTCRNIFSLELgyrmndnqiinhfpnhyeltRKDLLVKNIKRYRKELERegnplaeksnevpgryihldfipitfilpadyNMFVEEyrknpastwimkpcgksqgngIFLINKLSKLKkwsresktpfnpilvKESYVISkyidnplliggkkfdLRLYVLVTSfrplkcylfklgfcrfctvkydkniTELDNMYVHLTNVSvqkhgadynnihggkmNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKwsresktpfnpilvKESYVISkyidnplliggkkc
mlrlpilkcIQTCRNIFSLELGYRMNDNQIINHfpnhyeltrkDLLVKNIKRYRKEleregnplaeksnevpgryIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLkkwsresktpfnpilvkesyVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKkwsresktpfnpiLVKEsyviskyidnplliggkkc
MLRLPILKCIQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKC
***LPILKCIQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYR****************VPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDNPLLIG****
*LRLPILKCIQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLK*****************SYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKC
MLRLPILKCIQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKC
*LRLPILKCIQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDNPLLIGG**C
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRLPILKCIQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
Q0VC71423 Probable tubulin polyglut yes N/A 0.840 0.612 0.709 1e-113
O95922423 Probable tubulin polyglut yes N/A 0.840 0.612 0.709 1e-113
Q91V51423 Probable tubulin polyglut yes N/A 0.840 0.612 0.706 1e-113
Q5PPI9423 Probable tubulin polyglut yes N/A 0.840 0.612 0.706 1e-113
Q23SI8433 Probable alpha-tubulin po N/A N/A 0.808 0.575 0.567 4e-82
Q3SZH6461 Probable tubulin polyglut no N/A 0.762 0.509 0.410 4e-54
Q641W7461 Probable tubulin polyglut no N/A 0.759 0.507 0.412 1e-53
A2APC3461 Probable tubulin polyglut no N/A 0.759 0.507 0.416 1e-52
Q3SXZ7439 Probable tubulin polyglut no N/A 0.704 0.494 0.430 4e-47
Q8CHB8 1328 Tubulin polyglutamylase T no N/A 0.694 0.161 0.370 1e-36
>sp|Q0VC71|TTLL1_BOVIN Probable tubulin polyglutamylase TTLL1 OS=Bos taurus GN=TTLL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 186/262 (70%), Positives = 234/262 (89%), Gaps = 3/262 (1%)

Query: 10  IQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSN 69
           +QT RN+FS+E GYR++D+QI+NHFPNHYELTRKDL+VKNIKRYRKELE+EG+PLAEK  
Sbjct: 41  VQTIRNVFSVETGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDE 100

Query: 70  EVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLK 129
              G+Y++LDF+P+T++LPADYN+FVEE+RK+P+STWIMKPCGK+QG GIFLINKLS++K
Sbjct: 101 S--GKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIK 158

Query: 130 KWSRESKTP-FNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGF 188
           KWSR+SKT  F     KE+YVIS YI+NPLLIGG+KFDLRLYVLV+++RPL+CY++KLGF
Sbjct: 159 KWSRDSKTSSFVTQSTKEAYVISLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGF 218

Query: 189 CRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDIT 248
           CRFCTVKY  + +ELDNM+VHLTNV++QKHG DYN+IHGGK  + NLRLYLESTRGK++T
Sbjct: 219 CRFCTVKYTPSTSELDNMFVHLTNVAIQKHGEDYNHIHGGKWTVNNLRLYLESTRGKEVT 278

Query: 249 NKLFTNISWLIVHSLKSVSYIM 270
           +KLF  I W+IV SLK+V+ +M
Sbjct: 279 SKLFDEIHWIIVQSLKAVAPVM 300
Catalytic subunit of the neuronal tubulin polyglutamylase complex. Modifies alpha- and beta-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: -EC: .EC: -EC: .EC: -
>sp|O95922|TTLL1_HUMAN Probable tubulin polyglutamylase TTLL1 OS=Homo sapiens GN=TTLL1 PE=2 SV=1 Back     alignment and function description
>sp|Q91V51|TTLL1_MOUSE Probable tubulin polyglutamylase TTLL1 OS=Mus musculus GN=Ttll1 PE=1 SV=1 Back     alignment and function description
>sp|Q5PPI9|TTLL1_RAT Probable tubulin polyglutamylase TTLL1 OS=Rattus norvegicus GN=Ttll1 PE=2 SV=1 Back     alignment and function description
>sp|Q23SI8|TTLL1_TETTS Probable alpha-tubulin polyglutamylase Ttll1 OS=Tetrahymena thermophila (strain SB210) GN=Ttll1 PE=3 SV=1 Back     alignment and function description
>sp|Q3SZH6|TTLL9_BOVIN Probable tubulin polyglutamylase TTLL9 OS=Bos taurus GN=TTLL9 PE=2 SV=1 Back     alignment and function description
>sp|Q641W7|TTLL9_RAT Probable tubulin polyglutamylase TTLL9 OS=Rattus norvegicus GN=Ttll9 PE=2 SV=1 Back     alignment and function description
>sp|A2APC3|TTLL9_MOUSE Probable tubulin polyglutamylase TTLL9 OS=Mus musculus GN=Ttll9 PE=2 SV=2 Back     alignment and function description
>sp|Q3SXZ7|TTLL9_HUMAN Probable tubulin polyglutamylase TTLL9 OS=Homo sapiens GN=TTLL9 PE=2 SV=3 Back     alignment and function description
>sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus GN=Ttll5 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
156549431 432 PREDICTED: probable tubulin polyglutamyl 0.844 0.601 0.827 1e-127
307212492408 Probable tubulin polyglutamylase TTLL1 [ 0.850 0.642 0.821 1e-127
242014911361 conserved hypothetical protein [Pediculu 0.847 0.722 0.812 1e-126
340717338 436 PREDICTED: probable tubulin polyglutamyl 0.844 0.596 0.827 1e-126
383855872 436 PREDICTED: probable tubulin polyglutamyl 0.844 0.596 0.823 1e-126
350413395 436 PREDICTED: probable tubulin polyglutamyl 0.844 0.596 0.827 1e-126
328783855 434 PREDICTED: probable tubulin polyglutamyl 0.837 0.594 0.819 1e-124
158290036 417 AGAP010336-PA [Anopheles gambiae str. PE 0.844 0.623 0.806 1e-124
195125235 498 GI12743 [Drosophila mojavensis] gi|19391 0.850 0.526 0.784 1e-123
195428998 507 GK16596 [Drosophila willistoni] gi|19415 0.850 0.516 0.784 1e-123
>gi|156549431|ref|XP_001605729.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/261 (82%), Positives = 241/261 (92%), Gaps = 1/261 (0%)

Query: 11  QTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNE 70
           Q+CRNIFS+E GYRM DNQ INHFPNHYELTRKDLLVKNIKRYRK+LEREGNPLAE+ + 
Sbjct: 68  QSCRNIFSVETGYRMADNQTINHFPNHYELTRKDLLVKNIKRYRKDLEREGNPLAERGDG 127

Query: 71  VPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKK 130
            PG+Y+HLDFIP+TF+LPADYNMFVEEYRK+P STWIMKPCGKSQG GIFLINKLSKLKK
Sbjct: 128 -PGKYLHLDFIPVTFVLPADYNMFVEEYRKSPQSTWIMKPCGKSQGAGIFLINKLSKLKK 186

Query: 131 WSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCR 190
           WSRE++ PFNP L KESYVIS+YIDNPLLIGGKKFDLRLYVL+TSFRPLK YLFKLGFCR
Sbjct: 187 WSREARNPFNPNLTKESYVISRYIDNPLLIGGKKFDLRLYVLITSFRPLKAYLFKLGFCR 246

Query: 191 FCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNK 250
           FCTVKYD +I ELDNMYVHLTNVSVQKHG +YN++HGGK+++QNLRLYLESTRGK +T K
Sbjct: 247 FCTVKYDTSIQELDNMYVHLTNVSVQKHGDEYNSLHGGKLSVQNLRLYLESTRGKAVTEK 306

Query: 251 LFTNISWLIVHSLKSVSYIMA 271
           LF NISW IVHSLK+V+ +MA
Sbjct: 307 LFANISWCIVHSLKAVAPVMA 327

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307212492|gb|EFN88223.1| Probable tubulin polyglutamylase TTLL1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242014911|ref|XP_002428126.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512657|gb|EEB15388.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340717338|ref|XP_003397141.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383855872|ref|XP_003703434.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350413395|ref|XP_003489982.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328783855|ref|XP_393263.2| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Apis mellifera] gi|380018734|ref|XP_003693278.1| PREDICTED: probable tubulin polyglutamylase TTLL1-like [Apis florea] Back     alignment and taxonomy information
>gi|158290036|ref|XP_311608.4| AGAP010336-PA [Anopheles gambiae str. PEST] gi|157018446|gb|EAA07118.4| AGAP010336-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195125235|ref|XP_002007087.1| GI12743 [Drosophila mojavensis] gi|193918696|gb|EDW17563.1| GI12743 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195428998|ref|XP_002062551.1| GK16596 [Drosophila willistoni] gi|194158636|gb|EDW73537.1| GK16596 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
FB|FBgn0052238487 CG32238 [Drosophila melanogast 0.850 0.537 0.788 3.1e-115
UNIPROTKB|F1NZA9427 TTLL1 "Uncharacterized protein 0.840 0.606 0.729 8.1e-108
UNIPROTKB|Q0VC71423 TTLL1 "Probable tubulin polygl 0.840 0.612 0.709 3.1e-106
UNIPROTKB|E2RTA4423 TTLL1 "Uncharacterized protein 0.840 0.612 0.709 3.1e-106
MGI|MGI:2443047423 Ttll1 "tubulin tyrosine ligase 0.840 0.612 0.706 6.5e-106
RGD|1309124423 Ttll1 "tubulin tyrosine ligase 0.840 0.612 0.706 6.5e-106
UNIPROTKB|Q5PPI9423 Ttll1 "Probable tubulin polygl 0.840 0.612 0.706 6.5e-106
UNIPROTKB|O95922423 TTLL1 "Probable tubulin polygl 0.840 0.612 0.709 6.5e-106
UNIPROTKB|F1SJR6423 TTLL1 "Uncharacterized protein 0.840 0.612 0.706 1.4e-105
ZFIN|ZDB-GENE-040426-1326423 ttll1 "tubulin tyrosine ligase 0.840 0.612 0.699 2.3e-103
FB|FBgn0052238 CG32238 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 209/265 (78%), Positives = 239/265 (90%)

Query:    10 IQTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEK-- 67
             +QTCRNIFS++ GYRM+DNQ+INHFPNHYEL+RKDLLVKNIKRYRK+LER+GNPLAEK  
Sbjct:   112 VQTCRNIFSVDSGYRMHDNQMINHFPNHYELSRKDLLVKNIKRYRKDLERDGNPLAEKTE 171

Query:    68 SNEVPG-RYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLS 126
             SN   G RY++LDF+P TF+LPADYNMFVEEYRK P STWIMKPCGKSQG GIFLINKLS
Sbjct:   172 SNNSSGTRYLYLDFVPTTFVLPADYNMFVEEYRKFPLSTWIMKPCGKSQGAGIFLINKLS 231

Query:   127 KLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKL 186
             KLKKWSRE+K PF+P + KESYVIS+YIDNPLLIGGKKFDLRLYVLV SFRPLK YLFK 
Sbjct:   232 KLKKWSREAKGPFHPQIAKESYVISRYIDNPLLIGGKKFDLRLYVLVASFRPLKAYLFKQ 291

Query:   187 GFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKD 246
             GFCRFCTVKYD ++TELDNMYVHLTNVSVQKHG +YN +HGGK ++QNL LYLE TRGK+
Sbjct:   292 GFCRFCTVKYDTSVTELDNMYVHLTNVSVQKHGGEYNTLHGGKWSVQNLALYLEGTRGKE 351

Query:   247 ITNKLFTNISWLIVHSLKSVSYIMA 271
             +T++LF  ISWLIVHSL++V+ +MA
Sbjct:   352 VTDRLFGAISWLIVHSLRAVAPVMA 376
GO:0004835 "tubulin-tyrosine ligase activity" evidence=ISS
GO:0018166 "C-terminal protein-tyrosinylation" evidence=ISS
UNIPROTKB|F1NZA9 TTLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VC71 TTLL1 "Probable tubulin polyglutamylase TTLL1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTA4 TTLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2443047 Ttll1 "tubulin tyrosine ligase-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309124 Ttll1 "tubulin tyrosine ligase-like family, member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5PPI9 Ttll1 "Probable tubulin polyglutamylase TTLL1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O95922 TTLL1 "Probable tubulin polyglutamylase TTLL1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJR6 TTLL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1326 ttll1 "tubulin tyrosine ligase-like family, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O95922TTLL1_HUMAN6, ., -, ., -, ., -0.70990.84090.6122yesN/A
Q91V51TTLL1_MOUSE6, ., -, ., -, ., -0.70610.84090.6122yesN/A
Q5PPI9TTLL1_RAT6, ., -, ., -, ., -0.70610.84090.6122yesN/A
Q0VC71TTLL1_BOVIN6, ., -, ., -, ., -0.70990.84090.6122yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
pfam03133291 pfam03133, TTL, Tubulin-tyrosine ligase family 1e-78
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family Back     alignment and domain information 
 Score =  240 bits (615), Expect = 1e-78
 Identities = 95/248 (38%), Positives = 137/248 (55%), Gaps = 32/248 (12%)

Query: 24  RMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPI 83
               +Q +NHFP  YE+TRKDLL KNIKR   +  R+                  DF+P 
Sbjct: 4   DEPYHQALNHFPGSYEITRKDLLWKNIKRQPCDFGRK-----------------FDFLPR 46

Query: 84  TFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPIL 143
           TFILP D   FV+ +  N  +TWI+KP   ++G GI + N LS++ K  +          
Sbjct: 47  TFILPTDLAEFVDYFEDNERNTWIVKPSASARGRGIRITNDLSQILKQIQ---------- 96

Query: 144 VKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITEL 203
                V+ KYI+ PLLI G+KFD+RLYVLVTS  PL+ Y+++ G  RF +VKY  ++++L
Sbjct: 97  -SRPLVVQKYIERPLLIDGRKFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDL 155

Query: 204 DNMYVHLTNVSVQKH----GADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLI 259
           D++ +HLTN S+QK       DYN  +G K +L N   YLE    ++I  ++ + I   I
Sbjct: 156 DDVEMHLTNYSIQKKSSSLNEDYNEPNGHKWSLFNFWKYLEEKDKEEIWLEIESIIIKTI 215

Query: 260 VHSLKSVS 267
           + +    S
Sbjct: 216 LAAEVEAS 223

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 100.0
KOG2156|consensus 662 100.0
KOG2157|consensus497 100.0
KOG2158|consensus 565 100.0
KOG2155|consensus631 99.97
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 99.23
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 97.79
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 97.74
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 97.35
PRK05246316 glutathione synthetase; Provisional 97.34
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 97.22
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 97.2
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 96.98
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 96.94
PRK12458338 glutathione synthetase; Provisional 96.94
PRK10446300 ribosomal protein S6 modification protein; Provisi 96.9
PLN02941328 inositol-tetrakisphosphate 1-kinase 96.82
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 96.48
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 95.68
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 95.45
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 95.35
PRK06849389 hypothetical protein; Provisional 94.73
PRK14016 727 cyanophycin synthetase; Provisional 94.62
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 94.52
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 94.27
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 94.2
PRK07206416 hypothetical protein; Provisional 94.07
PRK08654 499 pyruvate carboxylase subunit A; Validated 94.0
PRK08462445 biotin carboxylase; Validated 93.73
PRK08463 478 acetyl-CoA carboxylase subunit A; Validated 93.67
PRK02186 887 argininosuccinate lyase; Provisional 93.3
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 93.19
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 93.19
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 93.08
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 93.05
PRK12999 1146 pyruvate carboxylase; Reviewed 92.69
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 92.64
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 92.54
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 92.31
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 92.02
PRK14571299 D-alanyl-alanine synthetase A; Provisional 91.98
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 91.93
PRK12833 467 acetyl-CoA carboxylase biotin carboxylase subunit; 91.9
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 91.51
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 91.5
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 91.33
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 91.3
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 91.24
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 91.2
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 91.02
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 90.95
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 90.94
PRK05586447 biotin carboxylase; Validated 90.59
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 89.92
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 89.88
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 89.57
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 89.41
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 89.37
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 89.2
PRK14569296 D-alanyl-alanine synthetase A; Provisional 89.08
PRK07178 472 pyruvate carboxylase subunit A; Validated 89.03
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 88.81
COG2308488 Uncharacterized conserved protein [Function unknow 88.81
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 88.45
PLN02257434 phosphoribosylamine--glycine ligase 87.92
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 87.66
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 87.12
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 86.93
PRK14572347 D-alanyl-alanine synthetase A; Provisional 86.87
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 86.58
KOG0238|consensus 670 85.96
KOG0369|consensus 1176 85.14
KOG2157|consensus497 83.92
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 83.82
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 83.7
PHA02117397 glutathionylspermidine synthase domain-containing 83.2
TIGR02049403 gshA_ferroox glutamate--cysteine ligase, T. ferroo 83.03
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 82.22
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 80.74
PRK14570364 D-alanyl-alanine synthetase A; Provisional 80.06
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information 
Probab=100.00  E-value=3.1e-56  Score=415.94  Aligned_cols=249  Identities=41%  Similarity=0.707  Sum_probs=125.9

Q ss_pred             CCCCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchhhHHHHHHHHHhCCCC
Q psy9333          25 MNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPAS  104 (308)
Q Consensus        25 l~~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~e~~~f~~~~~~~~~~  104 (308)
                      +.++|+||||||++.||+|+.|+++++++.+...              ..   .+|+|+||.||.+..+|.+.+.+.+.+
T Consensus         4 ~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~--------------~~---~~~~p~t~~l~~~~~~~~~~~~~~~~~   66 (292)
T PF03133_consen    4 MKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFP--------------KE---FDFYPETFILPQDYKEFLKYFEKNPKN   66 (292)
T ss_dssp             -CHHTT-TSS--EEEE----------------------------------------------HHHHHHHHHHHHHTTS--
T ss_pred             CCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcC--------------Cc---ccCCcceEecHHHHHHHHHHHhcCCCC
Confidence            5668999999999999999999999999876542              11   379999999999999999999888889


Q ss_pred             eEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEeeecCcEEEEE
Q psy9333         105 TWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLF  184 (308)
Q Consensus       105 ~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~Pl~vy~y  184 (308)
                      +||+||++++||+||.++++++++.++.         .....++||||||+||+||+|||||||+||||+|++||+||+|
T Consensus        67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~~---------~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y  137 (292)
T PF03133_consen   67 LWIVKPSNGSRGRGIKLFNNLEQILRFS---------KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLY  137 (292)
T ss_dssp             -EEEEES-------EEEES-HHHHHCCH---------CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEE
T ss_pred             EEEEeccccCCCCCceecCCHHHHHHHh---------hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeec
Confidence            9999999999999999999999987541         2356899999999999999999999999999999999999999


Q ss_pred             cCceEeecCCCCCCCcccccccccCCccccccccCC---CcC-CCCCCccchHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q psy9333         185 KLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGA---DYN-NIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIV  260 (308)
Q Consensus       185 ~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~---~~~-~~~g~~wsl~~l~~~L~~~~g~~~~~~i~~~I~~ii~  260 (308)
                      ++|++|+|+++|+....+..+.++||||+++||+.+   ++. ...+++|++..|++++..  |.+ .+.+|++|.++|+
T Consensus       138 ~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~-~~~~~~~i~~~i~  214 (292)
T PF03133_consen  138 KEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKE--GID-WEKIWEKICDIII  214 (292)
T ss_dssp             S--EEEE-SS------------------------------------EEEHHHHHHHCTTTS--SS--STTTCHHHHHHHH
T ss_pred             cCceEEeccceeeccccccccccccccccccccccccccccccccccccchhhhhhhhccc--CCC-cccchhhhhHHHH
Confidence            999999999999754568889999999999999843   222 235689999999999976  444 4678888888888


Q ss_pred             HHHHHHH-----HHHhhhcccc--------cCCCCCccchhhhccccccccCCcc
Q psy9333         261 HSLKSVS-----YIMAKKWSRE--------SKTPFNPILVKESYVISKYIDNPLL  302 (308)
Q Consensus       261 ~t~~a~~-----p~~~~~~~~~--------~~~~f~p~l~~~~~~~d~l~d~~~~  302 (308)
                      .++.++.     ..+.....++        .|..++|||+|+|.+|++-.++|++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~  269 (292)
T PF03133_consen  215 KTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVD  269 (292)
T ss_dssp             HHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTH
T ss_pred             HHhhhhhhhhccccccccccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhH
Confidence            8888882     2333332222        2888899999999999888777653

This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
>KOG2156|consensus Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>KOG2158|consensus Back     alignment and domain information
>KOG2155|consensus Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>COG2308 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>KOG0238|consensus Back     alignment and domain information
>KOG0369|consensus Back     alignment and domain information
>KOG2157|consensus Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PHA02117 glutathionylspermidine synthase domain-containing protein Back     alignment and domain information
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3tig_A380 Tubulin Tyrosine Ligase Length = 380 1e-09
4i4t_F384 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 3e-09
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase Length = 380 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 35/272 (12%)
Query: 21  LGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELE--------------REGNPLAE 66
           LG+     Q++N++    +L RK  LVK IK   +  E               E  P   
Sbjct: 55  LGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMR 114
Query: 67  KSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLS 126
             N +P     L   P T       + F ++      + WI K    ++G GI + +  +
Sbjct: 115 ARNGLP----DLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDAT 170
Query: 127 KLKKWSRESKTPFNPILVKESYVISKYIDNPLLI--GGKKFDLRLYVLVTSFRPLKCYLF 184
           +L  +              + +VI KY+++PLL+  G +KFD+R +VLV +      YL+
Sbjct: 171 ELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLY 219
Query: 185 KLGFCRFCTVKYDKNITELDNMYVHLTNVSVQK-HGADYNNI-HGGKMNLQNLRLYLEST 242
           + G  R  +  Y    T   +M  HLTN  +QK H  +Y     G +M  +    YL ++
Sbjct: 220 REGVLRTSSEPYSD--TNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTS 277
Query: 243 RGKDITNKLFTNISWLIVHSLKSVSYIMAKKW 274
              ++ N +   I  +I   L  +   ++ K+
Sbjct: 278 LNINLENSILCQIKEIIRVCLSCLEPAISTKY 309
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 384 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 2e-70
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380 Back     alignment and structure
 Score =  221 bits (565), Expect = 2e-70
 Identities = 62/281 (22%), Positives = 109/281 (38%), Gaps = 29/281 (10%)

Query: 11  QTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNE 70
                +    LG+     Q++N++    +L RK  LVK IK   +  E       E    
Sbjct: 45  GERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTETC-TWFPESYVI 103

Query: 71  VPGRYI-----------HLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGI 119
            P                L   P T       + F ++      + WI K    ++G GI
Sbjct: 104 YPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGI 163

Query: 120 FLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLI--GGKKFDLRLYVLVTSFR 177
            + +  ++L  +              + +VI KY+++PLL+  G +KFD+R +VLV +  
Sbjct: 164 LISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN-- 212

Query: 178 PLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADY--NNIHGGKMNLQNL 235
               YL++ G  R  +  Y        +M  HLTN  +QK  +        G +M  +  
Sbjct: 213 QYNIYLYREGVLRTSSEPYSDT--NFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEF 270

Query: 236 RLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSR 276
             YL ++   ++ N +   I  +I   L  +   ++ K+  
Sbjct: 271 NQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLP 311
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 100.0
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 97.32
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 96.77
3n6x_A474 Putative glutathionylspermidine synthase; domain o 96.7
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 96.65
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 96.58
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 96.56
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 96.51
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 96.33
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 95.99
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 95.85
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 95.65
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 95.65
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 95.46
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 95.39
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 95.35
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 95.16
3ouz_A446 Biotin carboxylase; structural genomics, center fo 95.05
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 94.99
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 94.81
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 94.78
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 94.5
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 94.47
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 94.44
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 94.43
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 94.31
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 94.31
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 94.23
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 94.15
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 94.13
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 94.12
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 94.02
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 93.95
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 93.93
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 93.77
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 93.69
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 93.33
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 93.22
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 93.13
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 92.86
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 92.82
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 92.77
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 92.73
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 92.3
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 92.1
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 92.04
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 92.0
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 91.97
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 91.77
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 91.67
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 91.64
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 91.2
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 90.82
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 90.78
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 90.75
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 90.64
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 90.45
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 90.35
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 90.31
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 90.14
2io8_A619 Bifunctional glutathionylspermidine synthetase/ami 89.3
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 88.49
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 87.54
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 86.33
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 85.76
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 85.42
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 85.24
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 85.13
2vob_A652 Trypanothione synthetase; ligase; 2.3A {Leishmania 84.7
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 84.69
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 81.85
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
Probab=100.00  E-value=5.9e-58  Score=438.25  Aligned_cols=239  Identities=26%  Similarity=0.460  Sum_probs=173.5

Q ss_pred             CCCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccc-hh---------------
Q psy9333          26 NDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFIL-PA---------------   89 (308)
Q Consensus        26 ~~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~l-p~---------------   89 (308)
                      ..+|+||||||+.+||||+.|+++|++++ ...              ..   .+|+|+||.| |.               
T Consensus        60 ~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~--------------~~---~~f~P~ty~L~P~~~~~p~~~~~~~~~~  121 (380)
T 3tig_A           60 GLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT--------------ET---CTWFPESYVIYPTNEKTPAMRARNGLPD  121 (380)
T ss_dssp             TCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH--------------TT---CTTSCCEEECCC----------------
T ss_pred             CcceEEeecCCcccccccHHHHHHHHHhh-hcc--------------cc---cCcCCcceeeCccccccccccccccccc
Confidence            66899999999999999999999999853 322              22   3899999999 75               


Q ss_pred             --------hHHHHHHHHHh----CCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333          90 --------DYNMFVEEYRK----NPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP  157 (308)
Q Consensus        90 --------e~~~f~~~~~~----~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P  157 (308)
                              |+++|+++|++    +++++||+||+++++|+||.++++++++.++.+.         ....+|||+||+||
T Consensus       122 ~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~---------~~~~~VvQkYI~~P  192 (380)
T 3tig_A          122 LANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDN---------QGQVHVIQKYLESP  192 (380)
T ss_dssp             --------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHHHHHHHHH---------HTSCEEEEECCSSB
T ss_pred             cccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhc---------cCCcEEEEecccCc
Confidence                    45679988864    5689999999999999999999999999877653         24689999999999


Q ss_pred             ccc--cCccceeeEEEEEeeecCcEEEEEcCceEeecCCCCCCCcccccccccCCcccccccc-CCCcCC-CCCCccchH
Q psy9333         158 LLI--GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH-GADYNN-IHGGKMNLQ  233 (308)
Q Consensus       158 lLi--~grKFDlR~yvLvts~~Pl~vy~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~-~~~~~~-~~g~~wsl~  233 (308)
                      +||  +|||||||+||||||  ||+||+|++|++|||+++|+  .+++++.++||||+||||+ +++|+. +.|++|+++
T Consensus       193 lLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~--~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~  268 (380)
T 3tig_A          193 LLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYS--DTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFE  268 (380)
T ss_dssp             CCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC------------------------------------CCBCHH
T ss_pred             eeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcC--ccchhhhhhhccccccccccccccccccCCCcCcHH
Confidence            999  999999999999999  99999999999999999995  4588889999999999996 567875 468999999


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccc--------cCCCCCccchhhhccccc
Q psy9333         234 NLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKW---SRE--------SKTPFNPILVKESYVISK  295 (308)
Q Consensus       234 ~l~~~L~~~~g~~~~~~i~~~I~~ii~~t~~a~~p~~~~~~---~~~--------~~~~f~p~l~~~~~~~d~  295 (308)
                      +|++||++..+.++.+.||++|+++|++++.|+++.|....   .++        .|..++|||+|+|.+|++
T Consensus       269 ~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~  341 (380)
T 3tig_A          269 EFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPAC  341 (380)
T ss_dssp             HHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCC
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCc
Confidence            99999988767777789999999999999999999998642   112        266777777777777776
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 97.44
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 96.97
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 96.76
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 95.97
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 93.98
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 93.85
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 93.31
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 93.23
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 92.73
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 92.6
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 91.29
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 91.28
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 90.53
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 89.84
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 89.55
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 86.84
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 81.89
d2io8a3297 Glutathionylspermidine synthase, synthetase domain 80.6
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: Prokaryotic glutathione synthetase, C-domain
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.0001  Score=61.24  Aligned_cols=84  Identities=23%  Similarity=0.213  Sum_probs=57.5

Q ss_pred             CCeeeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333          78 LDFIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID  155 (308)
Q Consensus        78 ~~~~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~  155 (308)
                      .+++|+|.+.  |.++.+|.+++     ..+|+||..|+.|+|+..+...+.........    .........++|+|+.
T Consensus        10 ~~~~P~Tlit~~~~~~~~f~~~~-----g~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~----~~~~~~~~~~~q~~~~   80 (192)
T d1gsaa2          10 SDLTPETLVTRNKAQLKAFWEKH-----SDIILKPLDGMGGASIFRVKEGDPNLGVIAET----LTEHGTRYCMAQNYLP   80 (192)
T ss_dssp             TTTSCCEEEESCHHHHHHHHHHH-----SSEEEECSSCCTTTTCEEECTTCTTHHHHHHH----HTTTTTSCEEEEECCG
T ss_pred             cccCCCeEEECCHHHHHHHHHHc-----CCeEEEEcCCCeEEEEEEeecCchhhhHHHHH----HHhcCccccccccccc
Confidence            4789999887  67888888775     25899999999999999996432211111000    0012345688899986


Q ss_pred             CCccccCccceeeEEEEEee
Q psy9333         156 NPLLIGGKKFDLRLYVLVTS  175 (308)
Q Consensus       156 ~PlLi~grKFDlR~yvLvts  175 (308)
                      ..     .+.|+|++|+...
T Consensus        81 ~~-----~~~d~Rv~vv~~~   95 (192)
T d1gsaa2          81 AI-----KDGDKRVLVVDGE   95 (192)
T ss_dssp             GG-----GGCEEEEEEETTE
T ss_pred             cc-----cCceeEEEEECCc
Confidence            32     3569999998754
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure