Psyllid ID: psy9355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MAFKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQPC
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccccEEEEcHHHHHccHHHHHHHHccccccccHHHHHHHHHccccccEEEEEcccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEccccccEEEEEEEEEcccHHHHHHHHHcccccccccHHHHHHcccccccccEEEccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHcHHHHHHHHHHHccEEEccEEEcccccccEEEHHHHcccccEEccccEEcHHHHHHHccccccc
Coil and Loop (DISEMBL)
mafkvdsrqgLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAEShrhtgdvyfvpafsglyapywqpdargiicgitedttrGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQAdlcgipvgknltggkdggkyiTDVSNASRTMLMNietlewdpmlcgvweinmqpc
Flexible Loop (DISEMBL)
mafkvdsrqglLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKnltggkdggkyITDVSNASRTMLMNIETLEWDPMLCGVWEINMQPC
Low Complexity Region (SEG)
MAFKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQPC
Disordered region (IsUnstruct)
*********GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEIN****
Disordered Region (DISOPRED)
**FKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ**
Disordered Region (DISEMBL)
MAFKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQPC
Disordered Region (DISPRO)
******SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEIN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q64516	559	Glycerol kinase OS=Mus mu	yes	N/A	0.754	0.275	0.664	8e-54
Q0IID9	559	Glycerol kinase OS=Bos ta	yes	N/A	0.754	0.275	0.664	1e-53
Q14409	553	Putative glycerol kinase	yes	N/A	0.764	0.282	0.662	1e-53
P32189	559	Glycerol kinase OS=Homo s	yes	N/A	0.754	0.275	0.664	2e-53
Q63060	524	Glycerol kinase OS=Rattus	yes	N/A	0.754	0.293	0.658	3e-53
Q4R4D5	553	Glycerol kinase 2 OS=Maca	N/A	N/A	0.754	0.278	0.638	5e-51
Q9WU65	554	Glycerol kinase 2 OS=Mus	no	N/A	0.764	0.281	0.624	5e-51
Q14410	553	Glycerol kinase 2 OS=Homo	no	N/A	0.754	0.278	0.645	5e-51
B9LD34	498	Glycerol kinase OS=Chloro	yes	N/A	0.745	0.305	0.565	4e-49
B8GC51	498	Glycerol kinase OS=Chloro	yes	N/A	0.745	0.305	0.565	6e-49

>sp|Q64516|GLPK_MOUSE Glycerol kinase OS=Mus musculus GN=Gk PE=2 SV=2

 Score =  209 bits (533), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 122/155 (78%), Gaps = 1/155 (0%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct: 300 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVG 359

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct: 360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
           DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K
Sbjct: 420 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVK 454

Key enzyme in the regulation of glycerol uptake and metabolism.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 0

>sp|Q0IID9|GLPK_BOVIN Glycerol kinase OS=Bos taurus GN=GK PE=2 SV=1

 Score =  209 bits (531), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 121/155 (78%), Gaps = 1/155 (0%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct: 300 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVG 359

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct: 360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
           DCGI L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct: 420 DCGIPLSHLQVDGGMTNNKILMQLQADILYIPVVK 454

Key enzyme in the regulation of glycerol uptake and metabolism.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q14409|GLPK3_HUMAN Putative glycerol kinase 3 OS=Homo sapiens GN=GK3P PE=5 SV=2

 Score =  209 bits (531), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 123/157 (78%), Gaps = 1/157 (0%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct: 294 VFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 353

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct: 354 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 413

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160
           DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K L
Sbjct: 414 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVKPL 450

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|P32189|GLPK_HUMAN Glycerol kinase OS=Homo sapiens GN=GK PE=1 SV=3

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 122/155 (78%), Gaps = 1/155 (0%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct: 300 VFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 359

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct: 360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
           DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K
Sbjct: 420 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVK 454

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q63060|GLPK_RAT Glycerol kinase OS=Rattus norvegicus GN=Gk PE=2 SV=1

 Score =  207 bits (527), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/155 (65%), Positives = 121/155 (78%), Gaps = 1/155 (0%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct: 294 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVG 353

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFS LYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct: 354 TSYGCYFVPAFSALYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 413

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
           DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K
Sbjct: 414 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVK 448

Key enzyme in the regulation of glycerol uptake and metabolism (By similarity). Increases the binding of activated glucocorticoid-receptor to nuclei in the presence of ATP.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q4R4D5|GLPK2_MACFA Glycerol kinase 2 OS=Macaca fascicularis GN=GK2 PE=2 SV=1

 Score =  200 bits (509), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/155 (63%), Positives = 118/155 (76%), Gaps = 1/155 (0%)

Query: 5   VDSRQGLLTTVAFKLGDE-PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTT+A+KLG E P  YALEGSVA+AGA + WLRDN+G++    +IE LA+   
Sbjct: 294 VFSEHGLLTTIAYKLGKEKPAYYALEGSVAIAGAVIRWLRDNLGIIETSGDIEKLAKEVG 353

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFSGLYAPYW+P ARGI+CG+T+ T + HI  AALEA+CFQTR+ILEAM +
Sbjct: 354 TSYGCYFVPAFSGLYAPYWEPSARGILCGLTQFTNKCHIAFAALEAVCFQTREILEAMNR 413

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
           DCGI L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct: 414 DCGIPLRHLQVDGGMTNNKVLMQLQADILHIPVIK 448

Key enzyme in the regulation of glycerol uptake and metabolism.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q9WU65|GLPK2_MOUSE Glycerol kinase 2 OS=Mus musculus GN=Gk2 PE=2 SV=1

 Score =  200 bits (509), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 121/157 (77%), Gaps = 1/157 (0%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTT+A+KLG ++PV YALEGSVA+AGA + WLRDN  ++T   E+E+LA    
Sbjct: 294 VFSEHGLLTTLAYKLGKNKPVFYALEGSVAIAGAVIRWLRDNFEIITTSGEVENLAREVG 353

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct: 354 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 413

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160
           DCGI L  LQVDGGMT N+ LMQ QAD+  IPV K++
Sbjct: 414 DCGIPLSHLQVDGGMTNNRILMQLQADILHIPVVKSV 450

Key enzyme in the regulation of glycerol uptake and metabolism.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q14410|GLPK2_HUMAN Glycerol kinase 2 OS=Homo sapiens GN=GK2 PE=2 SV=2

 Score =  200 bits (509), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 118/155 (76%), Gaps = 1/155 (0%)

Query: 5   VDSRQGLLTTVAFKLGDE-PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTTVA+KLG E P  YALEGSVA+AGA + WLRDN+G++    +IE LA+   
Sbjct: 294 VFSEHGLLTTVAYKLGREKPAYYALEGSVAIAGAVIRWLRDNLGIIETSGDIERLAKEVG 353

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +   YFVPAFSGLYAPYW+P ARGI+CG+T+ T + HI  AALEA+CFQTR+ILEAM +
Sbjct: 354 TSYGCYFVPAFSGLYAPYWEPSARGILCGLTQFTNKCHIAFAALEAVCFQTREILEAMNR 413

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
           DCGI L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct: 414 DCGIPLRHLQVDGGMTNNKVLMQLQADILHIPVIK 448

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|B9LD34|GLPK_CHLSY Glycerol kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glpK PE=3 SV=1

 Score =  194 bits (493), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 115/152 (75%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S+ GLLTTV +K GD+P VYALEGS+A+ GA + WLRDN+G++T   E+E+LA     
Sbjct: 279 VPSKSGLLTTVCYKFGDQPAVYALEGSIAITGALVQWLRDNLGLITSSAEVEALANLVED 338

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
            G +YFVPAFSGL+APYW+ DARG+I G+T    +GH+ RA LEA  +QTR++L+AM++D
Sbjct: 339 NGGIYFVPAFSGLFAPYWRSDARGVIVGLTRYVNKGHLARAVLEATAYQTREVLDAMEQD 398

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            G++L  L+VDGGM  N  LMQ QAD+ G+PV
Sbjct: 399 SGVKLTALKVDGGMVYNNTLMQFQADILGVPV 430

Key enzyme in the regulation of glycerol uptake and metabolism.

Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) (taxid: 480224)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|B8GC51|GLPK_CHLAD Glycerol kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glpK PE=3 SV=1

 Score =  193 bits (491), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 115/152 (75%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S+ GLLTTV +K GD+P VYALEGS+A+ GA + WLRDN+G++T   E+E+LA     
Sbjct: 279 VPSKSGLLTTVCYKFGDQPAVYALEGSIAITGALVQWLRDNLGLITTSAEVEALANLVED 338

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
            G +YFVPAFSGL+APYW+ DARG+I G+T    +GH+ RA LEA  +QTR++L+AM++D
Sbjct: 339 NGGIYFVPAFSGLFAPYWRSDARGVIVGLTRYVNKGHLARAVLEATAYQTREVLDAMEQD 398

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            G++L  L+VDGGM  N  LMQ QAD+ G+PV
Sbjct: 399 SGVKLTALKVDGGMVYNNTLMQFQADILGVPV 430

Key enzyme in the regulation of glycerol uptake and metabolism.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
350398739	517	PREDICTED: putative glycerol kinase 3-li	0.735	0.290	0.699	4e-58
340712059	517	PREDICTED: putative glycerol kinase 3-li	0.735	0.290	0.699	4e-58
307206432	517	Glycerol kinase [Harpegnathos saltator]	0.735	0.290	0.712	5e-57
380030485	517	PREDICTED: putative glycerol kinase 3-li	0.745	0.294	0.683	1e-56
328783919	517	PREDICTED: putative glycerol kinase 3-li	0.745	0.294	0.683	2e-56
322788409	515	hypothetical protein SINV_09388 [Solenop	0.735	0.291	0.692	4e-56
332021641	517	Glycerol kinase [Acromyrmex echinatior]	0.75	0.295	0.699	4e-56
383865305	515	PREDICTED: putative glycerol kinase 3-li	0.745	0.295	0.677	5e-56
307182150	518	Glycerol kinase [Camponotus floridanus]	0.740	0.291	0.668	7e-56
332375460	556	unknown [Dendroctonus ponderosae]	0.882	0.323	0.578	2e-55

>gi|350398739|ref|XP_003485295.1| PREDICTED: putative glycerol kinase 3-like [Bombus impatiens]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 126/153 (82%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           KVDS QGL+TT+A+K+G EP +YALEGSVA+ GAA+ WLRDN+ +   + + + +AES R
Sbjct: 293 KVDSTQGLITTIAYKMGKEPAIYALEGSVAIGGAALTWLRDNIQLFANITQSQDMAESVR 352

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
           ++GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HIVRAALEA+CFQTRDILEAM K
Sbjct: 353 NSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTQQYHIVRAALEAVCFQTRDILEAMIK 412

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 413 DSGTKLTTLQVDGGMTVNNLLMQLQADLTGINV 445

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712059|ref|XP_003394582.1| PREDICTED: putative glycerol kinase 3-like [Bombus terrestris]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 126/153 (82%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           KVDS QGL+TT+A+K+G EP +YALEGSVA+ GAA+ WLRDN+ +   + + + +AES R
Sbjct: 293 KVDSTQGLITTIAYKMGKEPAIYALEGSVAIGGAALTWLRDNIQLFANITQSQDMAESVR 352

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
           ++GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HIVRAALEA+CFQTRDILEAM K
Sbjct: 353 NSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTQQYHIVRAALEAVCFQTRDILEAMIK 412

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 413 DSGTKLTTLQVDGGMTVNNLLMQLQADLTGINV 445

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206432|gb|EFN84470.1| Glycerol kinase [Harpegnathos saltator]

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 126/153 (82%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           KVDS QGLLTTVA+K+   P VYALEGSVAVAGAA++WLRDN+ ++T + + + +AE  R
Sbjct: 293 KVDSTQGLLTTVAYKIARFPPVYALEGSVAVAGAALSWLRDNIQILTNITQSQDMAERVR 352

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HI+RAALEA+CFQTRDILEAM K
Sbjct: 353 CSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTQQYHIIRAALEAVCFQTRDILEAMVK 412

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 413 DSGTKLTTLQVDGGMTVNNLLMQLQADLTGITV 445

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030485|ref|XP_003698878.1| PREDICTED: putative glycerol kinase 3-like [Apis florea]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 124/155 (80%)

Query: 2   AFKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAES 61
           + KVDS QGL+TT+A+K+G     YALEGSVAVAGAA++WLRDN+ +   + + + +AE 
Sbjct: 291 SIKVDSTQGLITTIAYKIGKNSATYALEGSVAVAGAALSWLRDNIQLFNNITQSQDMAEH 350

Query: 62  HRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAM 121
            R +GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HIVRAALEA+CFQTRDILEAM
Sbjct: 351 VRSSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTQQYHIVRAALEAVCFQTRDILEAM 410

Query: 122 KKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            KD G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 411 VKDSGTKLTTLQVDGGMTVNNLLMQLQADLTGISV 445

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783919|ref|XP_623440.3| PREDICTED: putative glycerol kinase 3-like [Apis mellifera]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 124/155 (80%)

Query: 2   AFKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAES 61
           + KVDS QGL+TT+A+K+G     YALEGSVAVAGAA++WLRDN+ +   + + + +AE 
Sbjct: 291 SIKVDSTQGLITTIAYKIGKNSATYALEGSVAVAGAALSWLRDNIQLFNNITQSQDMAEH 350

Query: 62  HRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAM 121
            R +GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HIVRAALEA+CFQTRDILEAM
Sbjct: 351 VRSSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTQQYHIVRAALEAVCFQTRDILEAM 410

Query: 122 KKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            KD G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 411 VKDSGTKLTTLQVDGGMTVNNLLMQLQADLTGINV 445

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788409|gb|EFZ14080.1| hypothetical protein SINV_09388 [Solenopsis invicta]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 125/153 (81%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           KVDS QGL+TTV +K+   P VYALEGSVAVAGAA++WLRDN+ +++ + + + +AE  R
Sbjct: 293 KVDSTQGLITTVGYKIARAPAVYALEGSVAVAGAALSWLRDNMQLLSNITQTQDMAERVR 352

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HI+RAALEA+CFQTRDILEAM K
Sbjct: 353 CSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTQQYHIIRAALEAVCFQTRDILEAMVK 412

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 413 DSGTKLTTLQVDGGMTVNDLLMQLQADLTGINV 445

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021641|gb|EGI62000.1| Glycerol kinase [Acromyrmex echinatior]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 124/153 (81%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           KVDS QGL+TTVA+K+   P VYALEGSVAVAGAA++WLRDN+ ++  + + + +AE  R
Sbjct: 293 KVDSTQGLITTVAYKIARSPPVYALEGSVAVAGAALSWLRDNMQLIGNIMQTQDMAERVR 352

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HI+RAALEA+CFQTRDILEAM K
Sbjct: 353 CSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTEQYHIIRAALEAVCFQTRDILEAMVK 412

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G  L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 413 DSGTNLTTLQVDGGMTVNDLLMQLQADLIGITV 445

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865305|ref|XP_003708115.1| PREDICTED: putative glycerol kinase 3-like [Megachile rotundata]

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 124/155 (80%)

Query: 2   AFKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAES 61
           + K+DS QGL+TT+A+K+G  P  YALEGSVAVAGAA++WLRDN+ +   + + + +AE 
Sbjct: 291 SVKIDSNQGLITTIAYKMGKAPATYALEGSVAVAGAALSWLRDNMQLFNNIAQSQEMAEH 350

Query: 62  HRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAM 121
            + TGDVYFVPAFSGLYAPYW+ DARGIICGITEDT + HIVRA LEA+CFQTRDILEAM
Sbjct: 351 VKCTGDVYFVPAFSGLYAPYWEQDARGIICGITEDTQQYHIVRATLEAVCFQTRDILEAM 410

Query: 122 KKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            KD G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 411 VKDSGTKLTTLQVDGGMTVNNLLMQLQADLTGISV 445

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182150|gb|EFN69493.1| Glycerol kinase [Camponotus floridanus]

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 125/154 (81%)

Query: 3   FKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESH 62
            KVDS  GL+TT+A+K+   P VYALEGSVAVAGAA++WLR+N+ +++ + + + +AE  
Sbjct: 293 IKVDSMHGLITTIAYKIARSPAVYALEGSVAVAGAALSWLRNNMQLLSNITQTQDMAERV 352

Query: 63  RHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMK 122
           + +GDVYFVPAFSGLYAPYWQ DARG+ICGITEDT + HI+RAALEA+CFQTRDILEAM 
Sbjct: 353 KSSGDVYFVPAFSGLYAPYWQQDARGVICGITEDTEQYHIIRAALEAVCFQTRDILEAMV 412

Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           KD G +L  LQVDGGMT N  LMQ QADL GI V
Sbjct: 413 KDSGTELTMLQVDGGMTVNNLLMQLQADLTGITV 446

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375460|gb|AEE62871.1| unknown [Dendroctonus ponderosae]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 135/192 (70%), Gaps = 12/192 (6%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGV-EEIESLAESH 62
           +V S  GL+TTVA+K GDEP +YALEGSVAVAGAA+ WLRDN+G +  + E+ ESLA+  
Sbjct: 293 RVHSSHGLVTTVAYKFGDEPAIYALEGSVAVAGAAIKWLRDNMGFIKNINEDTESLAKEV 352

Query: 63  RHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMK 122
             TGDVYFVPAF GL+APYW+ DARGIICG+T  +T+ HI+RAALE++CFQTRD+LEAM 
Sbjct: 353 FTTGDVYFVPAFKGLFAPYWRQDARGIICGLTAFSTKQHIIRAALESVCFQTRDVLEAMN 412

Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV-----------GKNLTGGKDGGKYIT 171
           KDCGI L KL VDG MT N  LMQ QAD+ GIPV           G  +  G   G  + 
Sbjct: 413 KDCGIPLSKLNVDGIMTTNNLLMQLQADITGIPVVRAHAHDITALGVAMAAGMAKGVEVW 472

Query: 172 DVSNASRTMLMN 183
           DV    R ++ N
Sbjct: 473 DVHAEERDLIPN 484

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
UNIPROTKB|D4A354	559	Gk "Glycerol kinase" [Rattus n	0.754	0.275	0.664	4.6e-50
MGI|MGI:106594	559	Gyk "glycerol kinase" [Mus mus	0.754	0.275	0.664	4.6e-50
UNIPROTKB|Q14409	553	GK3P "Putative glycerol kinase	0.764	0.282	0.662	7.4e-50
UNIPROTKB|Q0IID9	559	GK "Glycerol kinase" [Bos taur	0.754	0.275	0.664	9.5e-50
UNIPROTKB|P32189	559	GK "Glycerol kinase" [Homo sap	0.754	0.275	0.664	1.2e-49
UNIPROTKB|C9JLT1	354	GK "Glycerol kinase" [Homo sap	0.754	0.435	0.664	1.2e-49
UNIPROTKB|E2QSE8	554	E2QSE8 "Uncharacterized protei	0.754	0.277	0.664	1.5e-49
UNIPROTKB|E2RNT9	524	GK "Uncharacterized protein" [	0.754	0.293	0.664	1.5e-49
UNIPROTKB|F6UV44	559	GK "Uncharacterized protein" [	0.754	0.275	0.664	1.5e-49
UNIPROTKB|F1SPV0	524	LOC100523928 "Uncharacterized	0.754	0.293	0.664	2e-49

UNIPROTKB|D4A354 Gk "Glycerol kinase" [Rattus norvegicus (taxid:10116)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 103/155 (66%), Positives = 122/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   300 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVG 359

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K
Sbjct:   420 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVK 454

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

MGI|MGI:106594 Gyk "glycerol kinase" [Mus musculus (taxid:10090)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 103/155 (66%), Positives = 122/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   300 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVG 359

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K
Sbjct:   420 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVK 454

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=ISO;IMP

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0042393 "histone binding" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISO

UNIPROTKB|Q14409 GK3P "Putative glycerol kinase 3" [Homo sapiens (taxid:9606)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 104/157 (66%), Positives = 123/157 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   294 VFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 353

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   354 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 413

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160
             DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K L
Sbjct:   414 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVKPL 450

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0005741 "mitochondrial outer membrane" evidence=NAS

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=NAS

UNIPROTKB|Q0IID9 GK "Glycerol kinase" [Bos taurus (taxid:9913)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 103/155 (66%), Positives = 121/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   300 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKSSEEIEKLAKEVG 359

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct:   420 DCGIPLSHLQVDGGMTNNKILMQLQADILYIPVVK 454

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

UNIPROTKB|P32189 GK "Glycerol kinase" [Homo sapiens (taxid:9606)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 103/155 (66%), Positives = 122/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   300 VFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 359

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K
Sbjct:   420 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVK 454

GO:0005524 "ATP binding" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IMP;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0005741 "mitochondrial outer membrane" evidence=NAS

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=IMP;NAS

GO:0005829 "cytosol" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=IMP

GO:0006641 "triglyceride metabolic process" evidence=IMP

UNIPROTKB|C9JLT1 GK "Glycerol kinase" [Homo sapiens (taxid:9606)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 103/155 (66%), Positives = 122/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:    95 VFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 154

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   155 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 214

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT+NK LMQ QAD+  IPV K
Sbjct:   215 DCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVK 249

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

UNIPROTKB|E2QSE8 E2QSE8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 103/155 (66%), Positives = 121/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   294 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 353

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   354 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 413

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct:   414 DCGIPLSHLQVDGGMTNNKILMQLQADILYIPVVK 448

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

UNIPROTKB|E2RNT9 GK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 103/155 (66%), Positives = 121/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   294 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 353

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   354 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 413

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct:   414 DCGIPLSHLQVDGGMTNNKILMQLQADILYIPVVK 448

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

UNIPROTKB|F6UV44 GK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 103/155 (66%), Positives = 121/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   300 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVG 359

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T + HI  AALEA+CFQTR+IL+AM +
Sbjct:   360 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNR 419

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCGI L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct:   420 DCGIPLSHLQVDGGMTNNKILMQLQADILYIPVVK 454

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

UNIPROTKB|F1SPV0 LOC100523928 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 103/155 (66%), Positives = 121/155 (78%)

Query:     5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
             V S  GLLTTVA+KLG D+PV YALEGSVA+AGA + WLRDN+G++   EEIE LA+   
Sbjct:   294 VFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVVRWLRDNLGIIKTSEEIEKLAKEVG 353

Query:    64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +   YFVPAFSGLYAPYW+P ARGIICG+T+ T R HI  AALEA+CFQTR+IL+AM +
Sbjct:   354 TSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNRCHIAFAALEAVCFQTREILDAMNR 413

Query:   124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
             DCG+ L  LQVDGGMT NK LMQ QAD+  IPV K
Sbjct:   414 DCGMPLRHLQVDGGMTNNKILMQLQADILYIPVVK 448

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q826J2	GLPK3_STRAW	2, ., 7, ., 1, ., 3, 0	0.5454	0.7549	0.3049	yes	N/A
A8I8V7	GLPK_AZOC5	2, ., 7, ., 1, ., 3, 0	0.5646	0.7205	0.2951	yes	N/A
A9WJ21	GLPK_CHLAA	2, ., 7, ., 1, ., 3, 0	0.5592	0.7450	0.3052	yes	N/A
A9WS93	GLPK_RENSM	2, ., 7, ., 1, ., 3, 0	0.5921	0.7450	0.3015	yes	N/A
A4FNR2	GLPK_SACEN	2, ., 7, ., 1, ., 3, 0	0.5490	0.75	0.306	yes	N/A
Q6AGR0	GLPK_LEIXX	2, ., 7, ., 1, ., 3, 0	0.5592	0.7450	0.3003	yes	N/A
Q5Z175	GLPK_NOCFA	2, ., 7, ., 1, ., 3, 0	0.5286	0.7450	0.3046	yes	N/A
B8GC51	GLPK_CHLAD	2, ., 7, ., 1, ., 3, 0	0.5657	0.7450	0.3052	yes	N/A
Q4J9R1	GLPK1_SULAC	2, ., 7, ., 1, ., 3, 0	0.5503	0.7205	0.2951	yes	N/A
C5C1C4	GLPK_BEUC1	2, ., 7, ., 1, ., 3, 0	0.5620	0.75	0.3029	yes	N/A
A1R6X6	GLPK_ARTAT	2, ., 7, ., 1, ., 3, 0	0.5789	0.7352	0.2976	yes	N/A
A8F679	GLPK_THELT	2, ., 7, ., 1, ., 3, 0	0.5519	0.7401	0.3026	yes	N/A
Q54VT8	GLPK_DICDI	2, ., 7, ., 1, ., 3, 0	0.5506	0.7696	0.2912	yes	N/A
Q749I1	GLPK_GEOSL	2, ., 7, ., 1, ., 3, 0	0.5855	0.7401	0.3044	yes	N/A
B1MFT1	GLPK_MYCA9	2, ., 7, ., 1, ., 3, 0	0.5454	0.6323	0.2559	yes	N/A
Q9CB81	GLPK_MYCLE	2, ., 7, ., 1, ., 3, 0	0.5256	0.7647	0.3070	yes	N/A
O69664	GLPK_MYCTU	2, ., 7, ., 1, ., 3, 0	0.5263	0.6225	0.2456	yes	N/A
B8H8T1	GLPK_ARTCA	2, ., 7, ., 1, ., 3, 0	0.5789	0.6225	0.2519	yes	N/A
A5U920	GLPK_MYCTA	2, ., 7, ., 1, ., 3, 0	0.5263	0.6225	0.2456	yes	N/A
B7KN92	GLPK_METC4	2, ., 7, ., 1, ., 3, 0	0.5526	0.7450	0.3033	yes	N/A
A4T5Y1	GLPK_MYCGI	2, ., 7, ., 1, ., 3, 0	0.5519	0.6617	0.2673	yes	N/A
A5G146	GLPK_ACICJ	2, ., 7, ., 1, ., 3, 0	0.5657	0.7450	0.3046	yes	N/A
Q14409	GLPK3_HUMAN	2, ., 7, ., 1, ., 3, 0	0.6624	0.7647	0.2820	yes	N/A
A9W8T7	GLPK_METEP	2, ., 7, ., 1, ., 3, 0	0.5526	0.7450	0.3033	yes	N/A
Q64516	GLPK_MOUSE	2, ., 7, ., 1, ., 3, 0	0.6645	0.7549	0.2754	yes	N/A
A5VE44	GLPK_SPHWW	2, ., 7, ., 1, ., 3, 0	0.5789	0.7450	0.2986	yes	N/A
B9LD34	GLPK_CHLSY	2, ., 7, ., 1, ., 3, 0	0.5657	0.7450	0.3052	yes	N/A
A5CS23	GLPK_CLAM3	2, ., 7, ., 1, ., 3, 0	0.5657	0.7450	0.3009	yes	N/A
Q01V13	GLPK_SOLUE	2, ., 7, ., 1, ., 3, 0	0.5466	0.7156	0.2955	yes	N/A
P32189	GLPK_HUMAN	2, ., 7, ., 1, ., 3, 0	0.6645	0.7549	0.2754	yes	N/A
Q63060	GLPK_RAT	2, ., 7, ., 1, ., 3, 0	0.6580	0.7549	0.2938	yes	N/A
B1ZGW7	GLPK_METPB	2, ., 7, ., 1, ., 3, 0	0.5526	0.7450	0.3033	yes	N/A
A5UU55	GLPK_ROSS1	2, ., 7, ., 1, ., 3, 0	0.5460	0.7450	0.3052	yes	N/A
B5EB79	GLPK_GEOBB	2, ., 7, ., 1, ., 3, 0	0.5306	0.7058	0.2909	yes	N/A
B8CM45	GLPK_SHEPW	2, ., 7, ., 1, ., 3, 0	0.5263	0.7401	0.3062	yes	N/A
Q0IID9	GLPK_BOVIN	2, ., 7, ., 1, ., 3, 0	0.6645	0.7549	0.2754	yes	N/A
Q39V17	GLPK_GEOMG	2, ., 7, ., 1, ., 3, 0	0.5789	0.7401	0.3044	yes	N/A
A1TGD7	GLPK_MYCVP	2, ., 7, ., 1, ., 3, 0	0.5526	0.6617	0.2673	yes	N/A
B2IE09	GLPK_BEII9	2, ., 7, ., 1, ., 3, 0	0.5394	0.7401	0.2978	yes	N/A
B3E6Z6	GLPK_GEOLS	2, ., 7, ., 1, ., 3, 0	0.5789	0.7401	0.3044	yes	N/A
C6E1L8	GLPK_GEOSM	2, ., 7, ., 1, ., 3, 0	0.5306	0.7058	0.2909	yes	N/A
B1LWN6	GLPK_METRJ	2, ., 7, ., 1, ., 3, 0	0.5328	0.7450	0.3033	yes	N/A
Q9ADA7	GLPK1_STRCO	2, ., 7, ., 1, ., 3, 0	0.5460	0.7450	0.2968	yes	N/A
A6WXV2	GLPK_OCHA4	2, ., 7, ., 1, ., 3, 0	0.5592	0.7450	0.3046	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	204
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	2e-95
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	1e-85
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	2e-84
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	1e-80
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	4e-80
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	5e-76
cd07789	495	cd07789, FGGY_CsGK_like, Cellulomonas sp	2e-74
PLN02295	512	PLN02295, PLN02295, glycerol kinase	8e-73
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	1e-71
cd07795	496	cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi	6e-68
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	4e-58
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	9e-53
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	2e-49
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	1e-38
pfam02782	193	pfam02782, FGGY_C, FGGY family of carbohydrate kin	5e-37
cd00366	435	cd00366, FGGY, FGGY family of carbohydrate kinases	2e-31
cd07794	470	cd07794, FGGY_GK_like_proteobact, Proteobacterial	1e-24
cd07804	492	cd07804, FGGY_XK_like_1, uncharacterized xylulose	1e-24
COG1070	502	COG1070, XylB, Sugar (pentulose and hexulose) kina	5e-23
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	1e-20
TIGR01312	481	TIGR01312, XylB, D-xylulose kinase	2e-19
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	6e-19
cd07783	484	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase	1e-17
cd07803	482	cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup	3e-17
cd07770	440	cd07770, FGGY_GntK, Gluconate kinases; a subfamily	1e-16
cd07805	514	cd07805, FGGY_XK_like_2, uncharacterized xylulose	1e-16
cd07774	430	cd07774, FGGY_1, uncharacterized subgroup; belongs	2e-16
cd07782	536	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu	2e-15
cd07789	495	cd07789, FGGY_CsGK_like, Cellulomonas sp	1e-14
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	2e-14
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	2e-14
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	2e-14
cd07779	488	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like	2e-14
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	2e-13
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	3e-13
COG1069	544	COG1069, AraB, Ribulose kinase [Energy production	4e-13
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	5e-13
cd07795	496	cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi	6e-13
PLN02295	512	PLN02295, PLN02295, glycerol kinase	8e-13
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	4e-12
cd07802	447	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil	4e-12
TIGR01315	541	TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki	7e-11
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	2e-10
TIGR01314	505	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	3e-09
PRK10331	470	PRK10331, PRK10331, L-fuculokinase; Provisional	3e-08
PRK15027	484	PRK15027, PRK15027, xylulokinase; Provisional	6e-08
cd07773	448	cd07773, FGGY_FK, L-fuculose kinases; a subfamily	2e-07
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	3e-07
cd07794	470	cd07794, FGGY_GK_like_proteobact, Proteobacterial	3e-07
cd07781	498	cd07781, FGGY_RBK, Ribulokinases; belongs to the F	4e-07
cd07809	487	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup	4e-07
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	1e-06
PRK04123	548	PRK04123, PRK04123, ribulokinase; Provisional	1e-06
pfam00370	245	pfam00370, FGGY_N, FGGY family of carbohydrate kin	2e-06
TIGR01234	536	TIGR01234, L-ribulokinase, L-ribulokinase	5e-06
cd00366	435	cd00366, FGGY, FGGY family of carbohydrate kinases	9e-06
cd07775	452	cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf	4e-05
TIGR02628	465	TIGR02628, fuculo_kin_coli, L-fuculokinase	7e-05
cd07771	440	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfam	2e-04
cd07770	440	cd07770, FGGY_GntK, Gluconate kinases; a subfamily	3e-04
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	6e-04
COG1070	502	COG1070, XylB, Sugar (pentulose and hexulose) kina	0.002
cd07777	448	cd07777, FGGY_SHK_like, sedoheptulokinase-like pro	0.004

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  286 bits (733), Expect = 2e-95
 Identities = 108/155 (69%), Positives = 127/155 (81%), Gaps = 1/155 (0%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GLLTTVA+KLG D+P +YALEGSVA+AGAA+ WLRDN+G++    +IE LA    
Sbjct: 285 VFSTHGLLTTVAYKLGPDKPTIYALEGSVAIAGAAIRWLRDNLGIIKTSSDIEKLASEVG 344

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            +GDVYFVPAFSGLYAPYW+ DARGIICG+T+ TT+ HI RAALEA+CFQTR+ILEAM K
Sbjct: 345 TSGDVYFVPAFSGLYAPYWRKDARGIICGLTQFTTKNHIARAALEAVCFQTREILEAMNK 404

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
           DCGI L KLQVDGGMT+N  LMQ QAD+ GIPV +
Sbjct: 405 DCGIPLSKLQVDGGMTSNNLLMQLQADILGIPVVR 439

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score =  261 bits (668), Expect = 1e-85
 Identities = 96/150 (64%), Positives = 116/150 (77%)

Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S+ GLLTTVA++LG +  VYALEGSV VAGAA+ WLRDN+ ++    E E+LA S    G
Sbjct: 278 SKHGLLTTVAYQLGGKKPVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNG 337

Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
            VYFVPAF+GL APYW PDARG I G+T  TT+ HI RAALEAI FQTRD+LEAM+KD G
Sbjct: 338 GVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAG 397

Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           +++ KL+VDGGMT N  LMQ QAD+ G+PV
Sbjct: 398 VEITKLRVDGGMTNNNLLMQFQADILGVPV 427

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  257 bits (659), Expect = 2e-84
 Identities = 99/153 (64%), Positives = 119/153 (77%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
            V S  GLLTT+A+KLG    VYALEGS+AVAG+A+ WLRDN+ +++   E+E LA S  
Sbjct: 275 PVISEHGLLTTIAYKLGPGKPVYALEGSIAVAGSAVQWLRDNLKIISSASEVEELAASVE 334

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            TG VYFVPAFSGL+APYW PDARG I G+T  TTR HIVRAALEAI FQTRD+L+AM+K
Sbjct: 335 DTGGVYFVPAFSGLFAPYWDPDARGTILGLTRGTTRAHIVRAALEAIAFQTRDVLDAMEK 394

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D GI+L  L+VDGG+T N  LMQ QAD+ G+PV
Sbjct: 395 DSGIKLSVLRVDGGLTKNNLLMQFQADILGVPV 427

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  247 bits (634), Expect = 1e-80
 Identities = 92/152 (60%), Positives = 115/152 (75%), Gaps = 1/152 (0%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S+ GLLTT+A++LG + V YALEGS+ +AGAA+ WLRD +G++    E E+LA S   
Sbjct: 275 VRSKNGLLTTIAWQLGGK-VTYALEGSIFIAGAAVQWLRDGLGLIESAAETEALARSVPD 333

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
            G VYFVPAF+GL APYW PDARG I G+T  TTR HI RAALE+I +QTRD+LEAM+ D
Sbjct: 334 NGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTRAHIARAALESIAYQTRDLLEAMEAD 393

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            GI L +L+VDGG +AN  LMQ QAD+ G+PV
Sbjct: 394 SGIPLKELRVDGGASANDFLMQFQADILGVPV 425

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score =  246 bits (631), Expect = 4e-80
 Identities = 96/154 (62%), Positives = 119/154 (77%), Gaps = 1/154 (0%)

Query: 4   KVDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESH 62
            V S+ GLLTTV ++LG + P VYALEGS+AVAGA + WLRDN+G+++   EIE LA S 
Sbjct: 281 IVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSV 340

Query: 63  RHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMK 122
           + TG V FVPAFSGL+APYW+PDARG I G+T  TTR HIVRAALEAI  QT D++E+M+
Sbjct: 341 KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESME 400

Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           KD GI+L  L+VDGG+T NK LMQ QAD+ G  +
Sbjct: 401 KDAGIELNSLRVDGGLTKNKLLMQFQADILGKDI 434

Length = 504

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score =  236 bits (604), Expect = 5e-76
 Identities = 81/152 (53%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A+ +  + V YALEGS+ VAG+A+ WLRD + +++   + E+LA     
Sbjct: 281 VKSENGLLTTIAWGIDGKVV-YALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVED 339

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
              VY VPAF+GL APYW  DARG I G+T  TT+ HI+RA LE+I +QTRD+L+AM+ D
Sbjct: 340 NDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQAD 399

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            GI+L +L+VDGG  AN  LMQ QAD+ G+PV
Sbjct: 400 SGIRLKELRVDGGAVANNFLMQFQADILGVPV 431

Length = 498

>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp

 Score =  231 bits (592), Expect = 2e-74
 Identities = 88/153 (57%), Positives = 114/153 (74%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
            V S+ GLLTTVA++ G +P VYALEGS+AV G+ + WLRDN+G++    EIE+LA +  
Sbjct: 277 PVRSKHGLLTTVAYQFGGQPAVYALEGSIAVTGSLVQWLRDNLGLIKTAAEIETLARTVE 336

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
             G VYFVPAFSGL+APYW+ DARG+I G+T    +GHI RA LEA  FQTR++++AM  
Sbjct: 337 DNGGVYFVPAFSGLFAPYWRSDARGVIVGLTRYVNKGHIARAVLEATAFQTREVVDAMNA 396

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G+ L  L+VDGGM AN+ LMQ QAD+ G+PV
Sbjct: 397 DSGVALESLRVDGGMVANELLMQFQADILGVPV 429

glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score =  228 bits (583), Expect = 8e-73
 Identities = 95/158 (60%), Positives = 115/158 (72%), Gaps = 6/158 (3%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S+ GLLTTVA+KLG D P  YALEGSVA+AGAA+ WLRDN+G++    EIE+LA +  
Sbjct: 283 VPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVD 342

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
            TG VYFVPAFSGL+AP W+ DARG+  GIT  T + HI RA LE++CFQ +D+L+AM+K
Sbjct: 343 DTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRK 402

Query: 124 DCGI-----QLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G       L  L+VDGG TAN  LMQ QADL G PV
Sbjct: 403 DAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPV 440

Length = 512

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score =  225 bits (575), Expect = 1e-71
 Identities = 88/152 (57%), Positives = 110/152 (72%), Gaps = 1/152 (0%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A+ L  +   YALEGS+ VAGAA+ WLRD +G++    + E LAES   
Sbjct: 280 VRSENGLLTTIAWGLDGKVT-YALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVED 338

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
            G VYFVPAF+GL APYW  DARG I G+T  TT+ HI RA LE+I +QTRD+LEAM+KD
Sbjct: 339 NGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKD 398

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            GI+L +L+VDGG + N  LMQ QAD+ G+PV
Sbjct: 399 SGIKLTRLRVDGGASRNNFLMQFQADILGVPV 430

Length = 499

>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  215 bits (549), Expect = 6e-68
 Identities = 91/154 (59%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 4   KVDSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESH 62
            V S+ GLLTTVA++ G     VYALEGS+AVAG+A+ WLRDN+G+++  E+I  LA   
Sbjct: 284 PVISKHGLLTTVAYQFGPGAKPVYALEGSIAVAGSAVKWLRDNLGLISKAEDIGELASQV 343

Query: 63  RHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMK 122
             +G V FV AFSGL+APYW  DARG I GIT+ TT+ HI RAALEA+CFQTR IL+AM 
Sbjct: 344 PDSGGVVFVTAFSGLFAPYWDDDARGTIFGITQYTTKSHIARAALEAVCFQTRAILDAMS 403

Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           KD G  L  L VDGGM+ +   MQ QAD+ GIPV
Sbjct: 404 KDSGSPLKALAVDGGMSNSDVAMQIQADILGIPV 437

This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  190 bits (483), Expect = 4e-58
 Identities = 88/160 (55%), Positives = 115/160 (71%), Gaps = 8/160 (5%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           + S  GLLTT+A+KLG D P  YALEGS+A+AGAA+ WLRD++G++    EIESLA++  
Sbjct: 285 IPSNHGLLTTIAYKLGPDAPTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIESLAKTVN 344

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
           +TG VYFVPAF+GL+AP+W+ DARG+  GIT  T + HI RA LE++CFQ +++L +MK 
Sbjct: 345 NTGGVYFVPAFNGLFAPWWRDDARGVCIGITRYTNKAHIARAVLESMCFQVKEVLTSMKA 404

Query: 124 DCG-IQLIK------LQVDGGMTANKHLMQTQADLCGIPV 156
           D G I+         L+VDGG T N  LMQ QADL G PV
Sbjct: 405 DAGNIEANTVGGEFLLRVDGGATVNNLLMQIQADLMGSPV 444

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score =  175 bits (446), Expect = 9e-53
 Identities = 69/152 (45%), Positives = 101/152 (66%), Gaps = 1/152 (0%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GL+T++A+ +    V Y LEG++   GA + WL+D +G++    E E LA S   
Sbjct: 276 VLSDHGLVTSLAWSV-GGKVTYVLEGNINYTGATITWLKDKLGLIQDPAETEELALSANP 334

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
              VY VPAF+GL APYW+ DA+  I G+T  T +  +VRAALE+I +Q  D+++AM++D
Sbjct: 335 NDGVYLVPAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVRAALESIAYQINDVIDAMEED 394

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            GI++ +L+VDGG T N++LMQ QAD+   PV
Sbjct: 395 SGIEISELRVDGGPTRNRYLMQFQADILNAPV 426

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  166 bits (422), Expect = 2e-49
 Identities = 76/155 (49%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
              GL TT+A+  G EP  YALEG++ V GAA+ W+ D +G+      +  LA +    G
Sbjct: 275 PSHGLSTTIAWHDGGEPT-YALEGNITVTGAAVAWMADLLGLP-DPAALSELAATASDNG 332

Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
            VYFVPA +GL AP+W  DARG+I G+T  T R H+ RAALE+I FQ  D+ EAM++  G
Sbjct: 333 GVYFVPALTGLGAPWWDRDARGLISGLTLGTGRAHLARAALESIAFQIADVFEAMQQAAG 392

Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161
             L +L VDGG T N+ LMQ QADL G PV ++ T
Sbjct: 393 GPLERLSVDGGATRNRFLMQLQADLLGRPVIRSDT 427

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  138 bits (349), Expect = 1e-38
 Identities = 60/150 (40%), Positives = 90/150 (60%), Gaps = 2/150 (1%)

Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S +GL   V +K+G+E VVY  EG+    G A++W + ++G+ T   E   +A S   + 
Sbjct: 293 SVKGLYPLVGWKIGNE-VVYLAEGASNDTGTAIDWAQ-SIGLFTDPAETSDMANSVPDSE 350

Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
            VYF+PAFSGL  P   P A     G+   TT+ H+VRA LE+I F+ + + E +KK+ G
Sbjct: 351 GVYFIPAFSGLQPPINDPRACAGFIGLKPSTTKEHLVRALLESIAFRIKQLYETIKKETG 410

Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
             + K++VDGG++ N  + Q  ADL G+PV
Sbjct: 411 QPIKKIRVDGGVSNNDFICQLLADLTGLPV 440

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain

 Score =  127 bits (320), Expect = 5e-37
 Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 14/161 (8%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEE---IESLAE 60
            V S  G+         +E   + LEG  + AG+ + WL   +     + +   +ESLA 
Sbjct: 18  PVLSVHGVWGPY----TNEGG-WGLEGGQSAAGSLLGWLLQTLRAREELRDAGLVESLAL 72

Query: 61  S-----HRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTR 115
                     G + F+P FSG  AP   P ARG I G++  TT  ++ RA LE +    R
Sbjct: 73  LLALAADAPAGGLLFLPDFSGERAPGADPHARGAITGLSSPTTLANLYRALLEGLALALR 132

Query: 116 DILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            ILEA+ +  G  + ++   GG + N  L+Q  AD  G PV
Sbjct: 133 QILEALAEL-GAPIDRIIASGGGSRNPLLLQLLADALGRPV 172

This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. Length = 193

>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases

 Score =  118 bits (297), Expect = 2e-31
 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 21  DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAE--SHRHTGDVYFVPAFSGLY 78
             P  Y  E S    GA + W RD  G+     + E+ A+   +     +  +P FSG  
Sbjct: 282 AIPGKYVTEASFFTGGALLRWFRDEFGLREDGSDYEAAAQEAPNSGPNGLLILPHFSGSG 341

Query: 79  APYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM 138
            PYW P ARG I G+T  TTR  I RA LE I ++ RD L+A++   GI++ +++V GG 
Sbjct: 342 TPYWDPAARGAIFGLTLGTTRADIYRALLEGIAYELRDNLDALEA-AGIKIDRIRVTGGG 400

Query: 139 TANKHLMQTQADLCGIPV 156
           + +   +Q  AD+ G+PV
Sbjct: 401 SRSDLWLQILADIFGLPV 418

This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435

>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =   99 bits (249), Expect = 1e-24
 Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 3/144 (2%)

Query: 10  GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVY 69
           GLL TVA+++G EP VYAL+G V  A AA+ W +  +G+ +  EE+ +          + 
Sbjct: 266 GLLPTVAWQIG-EPPVYALDGGVYDAAAAVEWAK-RLGLFSDFEELAAFPAPPAIARGLA 323

Query: 70  FVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQL 129
           FVPA SGL  P+W   A G+  G++  TTR  + +A LE +  ++ +++ AM     +  
Sbjct: 324 FVPALSGLACPHWDRSAAGLWLGMSLATTRQDMCQALLEGVAMRSAEVIYAMDGVRPVG- 382

Query: 130 IKLQVDGGMTANKHLMQTQADLCG 153
            +L +DGG+T N +  Q  AD+  
Sbjct: 383 DRLSIDGGLTRNPYFCQFLADVLQ 406

This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470

>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score = 99.6 bits (249), Expect = 1e-24
 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 8/141 (5%)

Query: 23  PVVYALEGSVAVAGAAMNWLRDNVG---MVTG---VEEIESLAE-SHRHTGDVYFVPAFS 75
           P  Y L G ++  GAA+ W RDN G      G    +E+E  AE        + F+P  +
Sbjct: 285 PGTYLLNGGMSTGGAALRWFRDNFGPEETEGGLDAYDELEEEAEKVPPGADGLLFLPYLA 344

Query: 76  GLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVD 135
           G   P W PDARG+  G+T   TR H+ RA LE + +  R ILE  ++  G+++ ++   
Sbjct: 345 GERTPIWDPDARGVFFGLTLGHTRAHLYRAVLEGVAYALRHILEIAEEA-GVKVSRVVAV 403

Query: 136 GGMTANKHLMQTQADLCGIPV 156
           GG   ++  MQ +AD+ G+PV
Sbjct: 404 GGGAKSRLWMQIKADVLGLPV 424

This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492

>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

 Score = 95.1 bits (237), Expect = 5e-23
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 26  YALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAE---SHRHTGDVYFVPAFSGLYAPYW 82
           + + G+    G  + WLR+  G+     E+   A    +      + F+P  SG   P+ 
Sbjct: 296 FIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHA 355

Query: 83  QPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANK 142
            P ARG   G+T   TR H+ RA LE + F   D LEA+++  G    +++V GG   + 
Sbjct: 356 DPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSP 415

Query: 143 HLMQTQADLCGIPV 156
             +Q  AD  G+PV
Sbjct: 416 LWLQILADALGLPV 429

Length = 502

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score = 88.3 bits (220), Expect = 1e-20
 Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 35  AGAAMNWLRDNVGMVTGVEEIESLAESHRH-TGDVYFVPAFSGLYAPYWQPDARGIICGI 93
           AG ++ W RD  G     EE+ + AE     +  + F+P  SG   P+  P+ARG   G+
Sbjct: 298 AGGSLKWFRDTFGPDDSYEELLAEAEQVPPGSEGLLFLPYLSGERTPHNDPNARGAFIGL 357

Query: 94  TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG 153
           T   TR H+ RA LE + F  RD LE + ++ G+ + ++   GG   +   +Q QAD+ G
Sbjct: 358 TLSHTRAHLTRAVLEGVAFSLRDSLEIL-RELGVPIDRIIAIGGGARSPLWLQIQADVLG 416

Query: 154 IPV 156
           +PV
Sbjct: 417 LPV 419

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 38/122 (31%), Positives = 60/122 (49%)

Query: 35  AGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT 94
           A +++ W R+  G        E   +S      V F+P  +G   P+  P ARG   G+T
Sbjct: 297 ATSSLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLT 356

Query: 95  EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI 154
            +TTR  + RA LE + F  RD L+ +++  GI +  +++ GG   +    Q  AD+ G 
Sbjct: 357 HNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGT 416

Query: 155 PV 156
           PV
Sbjct: 417 PV 418

This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 83.9 bits (208), Expect = 6e-19
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           NLTGG +GG +ITDV+NASRTMLMNIETLEWDP LC  + I M
Sbjct: 176 NLTGGPNGGVHITDVTNASRTMLMNIETLEWDPELCKFFGIPM 218

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 16/144 (11%)

Query: 22  EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYA-- 79
            P  + +EG     G+ + W +D +G        E   E+          P   GL    
Sbjct: 290 YPGTWLVEGGQTSTGSVLKWFKDLIGGGDDNGYDELNEEAAA------VPPGSEGLVVLD 343

Query: 80  -------PYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKL 132
                  PY  P ARG I G+T   TR H+ RA LE + + TR I +AM+   G ++ ++
Sbjct: 344 YFQGNRTPYTDPLARGAIWGLTLGHTRAHVYRAILEGVAYGTRHIFDAMEAA-GYEVSEI 402

Query: 133 QVDGGMTANKHLMQTQADLCGIPV 156
              GG T ++  +Q  AD+ G+P 
Sbjct: 403 VAAGGATRSRLWLQIHADVIGVPF 426

This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 35  AGAAMNWLRDNVG--MVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICG 92
           AG+A+ W RD +G   V+  E  E  A+       + F+P  +G   PY  P+ARG   G
Sbjct: 298 AGSALRWARDLLGPADVSYAEMAELAAQVPVGANGLLFLPYLNGERTPYNDPNARGAFFG 357

Query: 93  ITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC 152
           +T   TRGH+ RA LE + F  RD LE +    G    ++++ GG   ++   Q  AD+ 
Sbjct: 358 LTLSHTRGHLARAVLEGVAFSLRDCLEVL-HGMGTAPQRIKLIGGGAKSELWRQILADVL 416

Query: 153 GIPV 156
           G+PV
Sbjct: 417 GVPV 420

This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 16/152 (10%)

Query: 21  DEPVV--------YALEGSVAVAGAAMN-------WLRDNVGMVTGVEEIE-SLAESHRH 64
           D+PV         Y L+    V G A+N       WLRD + +    E  E  +      
Sbjct: 267 DQPVTDPPGRLFCYRLDKGRWVLGGAVNNGGIVLRWLRDTLALPEEEEAEELGIDPYDGL 326

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           T  + F+PA +G   P W    R  + G+T       I  AA+E +  + R ILE +  +
Sbjct: 327 TRGLEFLPAGAGERFPPWLSGERAPLWGLTRAARGSFIGLAAMEGVAHRLRAILEGIIFN 386

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
             + L  ++  GG T ++      AD     +
Sbjct: 387 LSVGLALVEASGGATESRAWGGFLADALWRQI 418

This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440

>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 11/142 (7%)

Query: 26  YALEGSVAVAGAAMNWLRDNVGM-------VTGVEEIESLAESHRHT----GDVYFVPAF 74
           Y +      AG A+ WL+D +           G    E L E           + F+P  
Sbjct: 301 YLVVAEQETAGGALEWLKDLLLQDEDGLADEEGRSVYERLDELAASAPPGSNGLIFLPWL 360

Query: 75  SGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQV 134
            G  +P   P+ARG    ++ +TTR  ++RA LE +    R +LEA+++  G +L +L+ 
Sbjct: 361 HGERSPVEDPNARGGFFNLSLETTRADLLRAVLEGVALNLRWLLEAVERFLGRRLGELRF 420

Query: 135 DGGMTANKHLMQTQADLCGIPV 156
            GG   +    Q  AD+ G P+
Sbjct: 421 VGGGARSDLWCQIIADVLGRPI 442

This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514

>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 22  EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPY 81
           EP  Y L   +   G A+ WLR    ++ G    +   E    +  + F P   G  +P 
Sbjct: 284 EPDRYYLIAGLPSGGFAIEWLR---NILGGEASSKRAQEKLLDSAAL-FYPYSRGSGSPI 339

Query: 82  WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN 141
               A G   G+T+ T++  I R+ LE + F+ R  LE ++K  G +  ++ V GG + N
Sbjct: 340 RSEIAGGAFYGLTDTTSQEDITRSVLEGLTFEARSTLECLEK-LGFEGSRIVVIGGGSRN 398

Query: 142 KHLMQTQADLCGIPV 156
           K  +Q +A + G P+
Sbjct: 399 KLWLQLKASVLGKPI 413

This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 430

>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 16/130 (12%)

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVR---AALEAICFQTRDILEAM 121
           T D++ +P F G  +P   P+ RG+I G+T DT+   + R   A L+AI + TR I+EAM
Sbjct: 374 TRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSLDDLARLYLATLQAIAYGTRHIIEAM 433

Query: 122 KKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV-----------GKNLTGGKDGGKYI 170
               G ++  L   GG++ N   +Q  AD  G+PV           G  + G    G + 
Sbjct: 434 NAA-GHKIDTLFACGGLSKNPLFVQLHADATGLPVVLPKEEEAVLLGAAMLGAVAAGDF- 491

Query: 171 TDVSNASRTM 180
             +  A   M
Sbjct: 492 PSLKEAMAAM 501

This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536

>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 26/44 (59%), Positives = 33/44 (75%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202
           NLTGG  GG ++TDV+NASRTMLM++ETL+WDP L   + I   
Sbjct: 168 NLTGGPRGGVHVTDVTNASRTMLMDLETLDWDPELLAAFGIPRS 211

glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 3/44 (6%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202
           NLTGGK    ++TDV+NASRTML NI TL+WD  L  ++ I  +
Sbjct: 169 NLTGGK---VHVTDVTNASRTMLFNIHTLDWDDELLELFGIPRE 209

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 3/43 (6%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           NLTGGK    ++TDV+NASRTMLMN+ TL+WD  L  ++ I  
Sbjct: 168 NLTGGK---VHVTDVTNASRTMLMNLHTLQWDEELLELFGIPS 207

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           NLTGGK    ++TDV+NASRT LMNI+TL+WD  L   + I  
Sbjct: 173 NLTGGKS---HVTDVTNASRTFLMNIKTLKWDEELLNKFGIPK 212

Length = 504

>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 31/77 (40%), Positives = 49/77 (63%)

Query: 80  PYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT 139
           P+W P+ARG I G  +  TR H+ RA +E I +  R+ LE ++K  G+++ KL+V GG +
Sbjct: 357 PHWDPEARGAIIGFGDVHTRAHLYRAIIEGIAYALREGLERIEKRTGVKIKKLRVSGGGS 416

Query: 140 ANKHLMQTQADLCGIPV 156
            +  + Q  AD+ G+PV
Sbjct: 417 QSDLICQITADIFGLPV 433

This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            LT GK    + TD SNASRT L NI TL+WD  LC ++ I
Sbjct: 168 KLTNGK---SFKTDYSNASRTQLFNIHTLDWDEELCELFGI 205

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            LTGGK    ++TD +NASRTML NI TL+WD  L  + +I
Sbjct: 173 KLTGGK---VHVTDYTNASRTMLFNIHTLDWDDELLELLDI 210

Length = 498

>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion]

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 52  VEEIESLAESHRH----TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTR---GHIVR 104
            + +E L E+          ++ +  F+G  +P   P  +G+I G+T DT+      + R
Sbjct: 349 AQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYR 408

Query: 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           A LEA  F TR I+E  +   GI +  L   GG+  N  LMQ  AD+ G PV
Sbjct: 409 ALLEATAFGTRAIIETFEDQ-GIAIDTLFASGGIRKNPLLMQLYADVTGRPV 459

Length = 544

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 66.4 bits (163), Expect = 5e-13
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            LTGGK    + TDV+NASRTML NI TLEWD  L  ++ I
Sbjct: 168 KLTGGK---VHATDVTNASRTMLFNIHTLEWDDELLELFGI 205

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           NLTGG     ++TDV+NASRTM MN+ TL++D  L   + I+ 
Sbjct: 175 NLTGGPKTKVHVTDVTNASRTMFMNLATLKYDQKLLDFFGIDK 217

This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           NLTGG  GG ++TDV+NASRTMLMN++TL+WD        I  
Sbjct: 174 NLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPA 216

Length = 512

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 23/41 (56%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            LTGGK    ++TD SNASRTML NI +LEWD  L  +  I
Sbjct: 173 KLTGGK---VHVTDYSNASRTMLFNIHSLEWDDELLELLGI 210

Length = 499

>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 63.7 bits (156), Expect = 4e-12
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 56  ESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTR 115
             +A +        F P    L      P+AR    G++   TR  +VRA  E + F  R
Sbjct: 330 RLVAAAPPEYHPYLFEP---FLRGSNVDPNARAGFFGLSAWHTRADLVRAVYEGVAFAHR 386

Query: 116 DILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D LEA++       I+L   GG   +    Q  AD+ G+PV
Sbjct: 387 DHLEALRATGLPGEIRLT--GGAARSPVWAQMFADVLGLPV 425

This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447

>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase

 Score = 60.3 bits (146), Expect = 7e-11
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVR---AALEAICFQTRDILEAM 121
               +  P   G  +P   P+ RG+I G++ D ++  +     A +E I + TR I+EAM
Sbjct: 378 VRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAM 437

Query: 122 KKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
               G  +  + + GG   N  LMQ  AD C +PV
Sbjct: 438 NTA-GHTIKSIFMSGGQCQNPLLMQLIADACDMPV 471

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. Length = 541

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 28  LEGSVAVAGAAMNWLRD--------NVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYA 79
           LEG  +  G    W  D        +     GV    + AE       +  +  F+G  +
Sbjct: 295 LEGGQSATGGIFLWFVDVGRLAATFDEAQEKGVALDAAAAERGPQLRGLLALDRFNGNRS 354

Query: 80  PYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT 139
           P+  P+ RG + G+T  T R  I RA LEA+ F TR I+EA       ++  L   GG  
Sbjct: 355 PFVDPELRGFLLGLTLPTDRADIYRALLEAVAFGTRLIVEAFHGLGYPEVGPLYAAGGGA 414

Query: 140 ANKHLMQTQADLCGIPV 156
            +   MQ  AD+ G PV
Sbjct: 415 RSHLWMQIHADVTGRPV 431

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 26  YALEGSVAVAGAAMNWLRDNV----------GMVTGVEEIESLAESHRHTGD-VYFVPAF 74
           + + G V   G  + W RD +            +   + +  +A       D + F P  
Sbjct: 288 WVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYL 347

Query: 75  SGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQV 134
           +G  AP W  +ARG   G+T    + H++RAALE + +    +  A+ +  G  L  +Q 
Sbjct: 348 AGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQA 407

Query: 135 DGGMTANKHLMQTQADLCGIPV 156
            GG  +++   Q  +D+    +
Sbjct: 408 TGGFASSEVWRQMMSDIFEQEI 429

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway [Energy metabolism, Sugars]. Length = 505

>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 86  ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLM 145
                 G+T +TTRGH  RAALE +  Q +  L+ ++K    +  +L + GG + N    
Sbjct: 347 QNAGWQGVTLNTTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWN 406

Query: 146 QTQADLCGIPV 156
           Q +A++  IP+
Sbjct: 407 QIKANMLDIPI 417

Length = 470

>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional

 Score = 51.5 bits (123), Expect = 6e-08
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 35  AGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT 94
           A + ++W     G+      I +  ++      V+F+P  SG   P+  P A+G+  G+T
Sbjct: 294 AASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLT 353

Query: 95  EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI 154
                  + RA LE + +   D ++ +   CGI+   + + GG   +++  Q  AD+ G 
Sbjct: 354 HQHGPNELARAVLEGVGYALADGMDVV-HACGIKPQSVTLIGGGARSEYWRQMLADISGQ 412

Query: 155 PVGKNLTGGKDG 166
            +    TGG  G
Sbjct: 413 QLDYR-TGGDVG 423

Length = 484

>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 66  GDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDC 125
             V F P F  L       D  G I G++  TTRGHI RAALE +  Q +  L+ +++  
Sbjct: 337 DGVNFEPDFLQL------GDGNGSIEGLSLHTTRGHIYRAALEGLTNQLKRNLDYLEQVG 390

Query: 126 GIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
             +   L + GG + N    Q +AD   IP+
Sbjct: 391 QFKAKPLILVGGGSKNTLWNQIRADALQIPL 421

This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 19/34 (55%), Positives = 28/34 (82%), Gaps = 2/34 (5%)

Query: 159 NLTGGKDG--GKYITDVSNASRTMLMNIETLEWD 190
           NLTGG +G  G ++TD +NA+RTMLM+++TL+W 
Sbjct: 174 NLTGGINGEEGVHVTDCTNAARTMLMDLKTLQWH 207

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLC 194
           G ++TDV+ ASRT LMN+ETL+WDP LC
Sbjct: 164 GTFVTDVTTASRTSLMNLETLQWDPELC 191

This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470

>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 84  PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NK 142
               G+I G+T  T    I RA +EA  F  R I+E   ++ G+ + ++   GG+   N 
Sbjct: 392 QRLTGLILGLTLQTKAEEIYRALIEATAFGARAIIERF-EEQGVPVERVIAAGGIAQKNP 450

Query: 143 HLMQTQADLCGIPV 156
            LMQ  AD+   P+
Sbjct: 451 LLMQIYADVLNRPI 464

This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498

>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 56  ESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT-EDTTRGHIVRAALEAICFQT 114
              A++      +  +P F+G   P   P+ARG + G+T  +TTR ++ RAA+E   F  
Sbjct: 323 ALAAQAPPGAEGLTLLPFFNGERTPN-LPNARGSLHGLTSANTTRANLARAAVEGATFGL 381

Query: 115 RDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           R  L+ + +  G++  ++++ GG   +    Q  AD+    V
Sbjct: 382 RYGLDLL-RALGLKSTEIRLIGGGAKSPAWRQIIADIMNAEV 422

This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           NLTGG     + TD SNA+RT L+++   +WDP L  ++ I
Sbjct: 166 NLTGGA---VFATDASNAARTQLLDLHGGQWDPQLLDLFGI 203

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 74  FSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQ 133
           F+G   P      +G+I G+T  T    I RA +EA  F TR I+E   +D G+ + ++ 
Sbjct: 385 FNGRRTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECF-EDQGVPVEEVI 443

Query: 134 VDGGM-TANKHLMQTQADLCGIPV 156
             GG+   N  LMQ  AD+   P+
Sbjct: 444 AAGGIARKNPVLMQIYADVLNRPI 467

Length = 548

>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           G++ TD S+AS TM+ NI+TLEWD  L  +  I  
Sbjct: 166 GQFTTDYSDASGTMMFNIKTLEWDEELLAILGIPP 200

This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245

>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 51  GVEEIESLAESHRHTGDVYFVPA--FSGLYAPYWQPDARGIICGITEDTTRGHIVRAALE 108
            + E  S A + + +G+   V    F+G  +P      +G+I G+T  T    + RA +E
Sbjct: 357 QLHEALSEAAAKQPSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIE 416

Query: 109 AICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCGIPV 156
           A  F TR I+E    D G+ + +L   GG+   N  +MQ  AD+   P+
Sbjct: 417 ATAFGTRMIMETF-TDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPL 464

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli [Energy metabolism, Sugars]. Length = 536

>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEIN 200
            G+++ D SNASRTML +I+T +WDP L     I 
Sbjct: 163 TGEFVIDYSNASRTMLFDIQTRDWDPELLEAAGIP 197

This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435

>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 33/138 (23%), Positives = 46/138 (33%), Gaps = 22/138 (15%)

Query: 36  GAAMNWLRD-------NVGMVTGVEEIESLAE--SHRHTGDVYFVPAFS--------GLY 78
           G  M W RD             G++  E L E  S    G    +P FS           
Sbjct: 302 GLVMRWFRDAFCAEEKLEAERLGIDTYELLEEMASRVPVGSYGIIPIFSDVMNYGTWYHA 361

Query: 79  APYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM 138
           AP +   +        E   R  + RA  E     +   L+ +    G +   L   GG 
Sbjct: 362 APSFLNLSL-----DPEKCGRATLFRALEENAAIVSAWNLDIITDFTGFEPDYLVFAGGA 416

Query: 139 TANKHLMQTQADLCGIPV 156
           + +K   Q  AD+ G PV
Sbjct: 417 SKSKLWSQILADVTGKPV 434

This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452

>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 26/70 (37%), Positives = 42/70 (60%)

Query: 87  RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQ 146
           +G I G+T +TTRGHI RAALE +  Q +  L+ +++    +  +L + GG + N    Q
Sbjct: 352 QGGIQGLTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQ 411

Query: 147 TQADLCGIPV 156
            +A++  IPV
Sbjct: 412 IRANMLDIPV 421

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465

>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 98  TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           T G I R   E++  + R  LE +++  G ++  + + GG + N+ L Q  AD  GIPV
Sbjct: 366 TPGEIARCIYESLALKYRRTLEELEELTGKKIEVIHIVGGGSRNELLNQLTADATGIPV 424

This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 440

>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G+ + D S AS T L+NI TL+WD     +  I
Sbjct: 164 GELVVDYSIASGTGLLNIHTLDWDEEALEIAGI 196

This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
            LTGGK   +++TDVSNAS T L +  T+EW      ++ I  
Sbjct: 184 KLTGGK---EHVTDVSNASATGLFDPFTMEWSSWALSLFGIPS 223

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLC 194
           G++ T++S+AS T L++I T +WD  L 
Sbjct: 171 GEFATEISDASGTGLLDIRTRKWDWELL 198

Length = 502

>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 53  EEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT-EDTTRGHIVRAALEAIC 111
           + + +LA +      +   P   G       PD R  +  IT  + T GHI RA  + I 
Sbjct: 332 DRLIALALAESDP-PLKIDPTLFG---ERHDPDLRASVSNITLSNLTLGHITRALCQGIV 387

Query: 112 FQTRDIL-EAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
               ++    + K  GI+ I       +  N  L      + G+P+
Sbjct: 388 ENLHEMFPRELLKSAGIERIVG-SGSALRRNPVLRDEVEKVFGLPL 432

This subfamily is predominantly composed of uncharacterized bacterial and eukaryotic proteins with similarity to human sedoheptulokinase (SHK, also known as D-altro-heptulose or heptulokinase, EC 2.7.1.14) encoded by the carbohydrate kinase-like (CARKL/SHPK) gene. SHK catalyzes the ATP-dependent phosphorylation of sedoheptulose to produce sedoheptulose 7-phosphate and ADP. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
PLN02295	512	glycerol kinase	100.0
PRK00047	498	glpK glycerol kinase; Provisional	100.0
PTZ00294	504	glycerol kinase-like protein; Provisional	100.0
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	100.0
COG0554	499	GlpK Glycerol kinase [Energy production and conver	100.0
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	100.0
PRK15027	484	xylulokinase; Provisional	100.0
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	100.0
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	100.0
PRK04123	548	ribulokinase; Provisional	100.0
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	100.0
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	100.0
PRK10331	470	L-fuculokinase; Provisional	100.0
PF02782	198	FGGY_C: FGGY family of carbohydrate kinases, C-ter	100.0
KOG2517|consensus	516		99.97
COG1069	544	AraB Ribulose kinase [Energy production and conver	99.97
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	99.97
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	99.97
PRK10640	471	rhaB rhamnulokinase; Provisional	99.96
PLN02669	556	xylulokinase	99.94
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	99.91
KOG2531|consensus	545		99.13
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.55
PRK13317	277	pantothenate kinase; Provisional	98.21
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	97.52
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	97.21
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	96.94
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	96.91
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	96.88
COG0533	342	QRI7 Metal-dependent proteases with possible chape	96.86
PRK09585	365	anmK anhydro-N-acetylmuramic acid kinase; Reviewed	96.7
PF03702	364	UPF0075: Uncharacterised protein family (UPF0075);	96.63
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	96.54
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.43
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	96.29
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	96.18
PLN02920	398	pantothenate kinase 1	95.93
COG2377	371	Predicted molecular chaperone distantly related to	95.38
PRK09604	332	UGMP family protein; Validated	95.36
PRK14878	323	UGMP family protein; Provisional	95.19
PRK11678	450	putative chaperone; Provisional	94.94
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	94.93
PRK09472	420	ftsA cell division protein FtsA; Reviewed	94.83
CHL00094	621	dnaK heat shock protein 70	94.64
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	94.4
TIGR00329	305	gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami	94.39
PF03630	341	Fumble: Fumble ; InterPro: IPR004567 Pantothenate	94.37
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	94.34
PLN02902	876	pantothenate kinase	94.23
TIGR03722	322	arch_KAE1 universal archaeal protein Kae1. This fa	94.03
TIGR03723	314	bact_gcp putative glycoprotease GCP. This model re	93.95
PRK13410	668	molecular chaperone DnaK; Provisional	93.71
COG3426	358	Butyrate kinase [Energy production and conversion]	93.64
PRK13928	336	rod shape-determining protein Mbl; Provisional	93.62
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	92.7
PRK13929	335	rod-share determining protein MreBH; Provisional	92.62
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	92.53
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	92.47
PRK09605	535	bifunctional UGMP family protein/serine/threonine	92.29
PRK13927	334	rod shape-determining protein MreB; Provisional	92.25
PRK05183	616	hscA chaperone protein HscA; Provisional	91.95
PTZ00400	663	DnaK-type molecular chaperone; Provisional	91.89
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	91.71
PRK13930	335	rod shape-determining protein MreB; Provisional	91.49
PRK01433	595	hscA chaperone protein HscA; Provisional	91.0
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	90.81
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	89.67
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	89.42
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	89.03
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	87.83
PTZ00297	1452	pantothenate kinase; Provisional	87.6
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	86.71
PLN03184	673	chloroplast Hsp70; Provisional	86.39
PF02543	360	CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036	86.31
KOG2201|consensus	371		85.97
PRK13411	653	molecular chaperone DnaK; Provisional	85.8
PTZ00009	653	heat shock 70 kDa protein; Provisional	85.5
PRK00180	402	acetate kinase A/propionate kinase 2; Reviewed	85.3
TIGR00016	404	ackA acetate kinase. Acetate kinase is involved in	84.45
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	83.82
PF00814	268	Peptidase_M22: Glycoprotease family; InterPro: IPR	83.31
PRK07058	396	acetate kinase; Provisional	81.18
PRK12379	396	propionate/acetate kinase; Provisional	80.16

>PLN02295 glycerol kinase

Probab=100.00  E-value=1.3e-39  Score=291.91  Aligned_cols=193  Identities=49%  Similarity=0.725  Sum_probs=168.1

Q ss_pred             CCCceeeeeeecC-CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCC
Q psy9355           8 RQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDA   86 (204)
Q Consensus         8 ~~g~~~~~~~~~~-~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~   86 (204)
                      ..+.+.+++|.++ ..|+.|+++++++++|.+++|+++.++...+++++++++++.++++|++|+|||.|+|+|+||+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~a  365 (512)
T PLN02295        286 KHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDA  365 (512)
T ss_pred             CCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCC
Confidence            4577888888764 237899999999999999999999886434577888888777777789999999999999999999


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355          87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD-----CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus        87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~-----~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ||.|+||+.+|+++||+|||+|||||++|+++|.|++.     .+.++++|+++||+++|++|+||+||++|+||+++..
T Consensus       366 rg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~  445 (512)
T PLN02295        366 RGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPAD  445 (512)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCc
Confidence            99999999999999999999999999999999999864     2346889999999999999999999999999998775


Q ss_pred             C----------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         162 G----------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       162 ~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                      .          ++++.|+|++++++.+++++..++|+|+++..+ |++.+
T Consensus       446 ~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P~~~~~~-y~~~y  494 (512)
T PLN02295        446 IETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRPKLDEEE-RAKRY  494 (512)
T ss_pred             cccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECCCCCHHH-HHHHH
Confidence            2          235778899988776688898999999999888 77654

>PRK00047 glpK glycerol kinase; Provisional

Probab=100.00  E-value=4.4e-39  Score=287.75  Aligned_cols=191  Identities=43%  Similarity=0.689  Sum_probs=166.5

Q ss_pred             CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCc
Q psy9355           8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDAR   87 (204)
Q Consensus         8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~   87 (204)
                      ..+.+.+++|.++. ++.|+++++++++|.+++|+++.++....+++++++++..+++++++|+|||.|+|+|+||+++|
T Consensus       284 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~ar  362 (498)
T PRK00047        284 ENGLLTTIAWGIDG-KVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDAR  362 (498)
T ss_pred             CCCceeEEEEEcCC-CcEEEEEeeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCc
Confidence            45677778887542 23799999999999999999998864345677788887777778999999999999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-----
Q psy9355          88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-----  162 (204)
Q Consensus        88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-----  162 (204)
                      |.|+|++.+|+++||+|||+|||||.+|+++|.|++..|.++++|+++||++||++|+||+||++|+||+++...     
T Consensus       363 g~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~  442 (498)
T PRK00047        363 GAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTAL  442 (498)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHH
Confidence            999999999999999999999999999999999986458889999999999999999999999999999987652     


Q ss_pred             -----CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 -----GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 -----~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                           ++++.|.|+|++++ +++++..++|+|++++++ |++.+
T Consensus       443 GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~~~-y~~~~  484 (498)
T PRK00047        443 GAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEPQMDEEE-REKLY  484 (498)
T ss_pred             HHHHHHhhhcCcCCCHHHH-HhhcCCCeEECCCCCHHH-HHHHH
Confidence                 23678899999987 788888999999999877 77654

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=100.00  E-value=4.5e-39  Score=288.08  Aligned_cols=193  Identities=49%  Similarity=0.756  Sum_probs=169.3

Q ss_pred             CCCceeeeeeecC-CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCC
Q psy9355           8 RQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDA   86 (204)
Q Consensus         8 ~~g~~~~~~~~~~-~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~   86 (204)
                      ..+++..+||.++ ..|+.|++++++.++|.+++|+++.++...+++++++++++.+++++++|+|||.|+|+|+||+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~a  364 (504)
T PTZ00294        285 KHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDA  364 (504)
T ss_pred             CCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCC
Confidence            4567778888763 336799999999999999999999887545688888888877788899999999999999999999


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC----
Q psy9355          87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG----  162 (204)
Q Consensus        87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~----  162 (204)
                      ||.|+|++.+|+++||+|||+|||||.+|+++|.|++..|.++++|+++||+++|++|+||+||++|+||+++...    
T Consensus       365 rg~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a  444 (504)
T PTZ00294        365 RGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTA  444 (504)
T ss_pred             CEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecCcccchH
Confidence            9999999999999999999999999999999999987558888999999999999999999999999999988762    


Q ss_pred             ------CcccccccCCHHHHHHHhhc-cCeEeecCcchhhhhhccCC
Q psy9355         163 ------GKDGGKYITDVSNASRTMLM-NIETLEWDPMLCGVWEINMQ  202 (204)
Q Consensus       163 ------~a~g~g~~~~~~~a~~~~~~-~~~~~~P~~~~~~~y~~~~~  202 (204)
                            ++++.|.|+|++++. ++++ ..++|+|+++.++ |++.++
T Consensus       445 lGaAl~aa~a~G~~~~~~~~~-~~~~~~~~~~~P~~~~~~-y~~~~~  489 (504)
T PTZ00294        445 LGAALLAGLAVGVWKSLEEVK-KLIRRSNSTFSPQMSAEE-RKAIYK  489 (504)
T ss_pred             HHHHHHHHhhcCccCCHHHHH-HhccCCCcEECCCCCHHH-HHHHHH
Confidence                  135788999999875 5555 6789999999999 888654

>TIGR01311 glycerol_kin glycerol kinase

Probab=100.00  E-value=1.1e-38  Score=284.91  Aligned_cols=192  Identities=52%  Similarity=0.776  Sum_probs=167.1

Q ss_pred             CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCc
Q psy9355           8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDAR   87 (204)
Q Consensus         8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~   87 (204)
                      ..+.+.+++|.++..+..|+++|++.++|.+++|+++.++...++++++++++..+++++++|+|||.|+|+|+||+++|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~ar  358 (493)
T TIGR01311       279 KHGLLTTVAYQLGGKKPVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDAR  358 (493)
T ss_pred             CCCceEEEEEecCCCCceEEEEeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCc
Confidence            34566778887542111599999999999999999998875456778888887777888999999999999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-----
Q psy9355          88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-----  162 (204)
Q Consensus        88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-----  162 (204)
                      |+|+|++.+|+++||+|||+|||||.+|++++.|++..|.++++|+++||++||++|+||+||++|+||++++..     
T Consensus       359 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~al  438 (493)
T TIGR01311       359 GAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTAL  438 (493)
T ss_pred             EEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHH
Confidence            999999999999999999999999999999999987558888999999999999999999999999999987652     


Q ss_pred             -----CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 -----GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 -----~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                           ++++.|.|+|++++ +++++..++|+|+++..+ |++.+
T Consensus       439 GaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P~~~~~~-y~~~~  480 (493)
T TIGR01311       439 GAAYAAGLAVGYWKSLEEI-EALWRVEKTFEPEMDEEE-REARY  480 (493)
T ss_pred             HHHHHHHhhcCcCCCHHHH-HHhcCCCcEECCCCCHHH-HHHHH
Confidence                 23678999999996 899999999999999877 77754

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=100.00  E-value=4.2e-38  Score=270.84  Aligned_cols=187  Identities=49%  Similarity=0.770  Sum_probs=171.9

Q ss_pred             cCCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCC
Q psy9355           4 KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQ   83 (204)
Q Consensus         4 ~~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~   83 (204)
                      ++.|++||++|++|.++. +-.|.+||++..+|.+++||++.+++..+..+.+.+|++++.++|++|.|.|.|.++||||
T Consensus       279 ~~~S~~~LLtTIa~~l~g-k~~YALEGsif~aGaavqWLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd  357 (499)
T COG0554         279 PVRSENGLLTTIAWGLDG-KVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWD  357 (499)
T ss_pred             cccCCCCceeEEEeccCC-eEEEEEecceeehhhHHHHHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcC
Confidence            477889999999999985 5789999999999999999999999888889999999998878899999999999999999


Q ss_pred             CCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355          84 PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-  162 (204)
Q Consensus        84 ~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-  162 (204)
                      +++||.|+||+..++++|++||++|||||+.+++++.|++..+.+++++++.||.++|+++||++||++|+||++|... 
T Consensus       358 ~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~E  437 (499)
T COG0554         358 SDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVLE  437 (499)
T ss_pred             cccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeeccccch
Confidence            9999999999999999999999999999999999999999888889999999999999999999999999999999973 


Q ss_pred             ---------CcccccccCCHHHHHHHhhccCeEeecCcc
Q psy9355         163 ---------GKDGGKYITDVSNASRTMLMNIETLEWDPM  192 (204)
Q Consensus       163 ---------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~  192 (204)
                               +.++.|+++|.+|.. +.....+.|+|..+
T Consensus       438 tTAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~  475 (499)
T COG0554         438 TTALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMD  475 (499)
T ss_pred             hhHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCC
Confidence                     235678899999865 55577899999864

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=100.00  E-value=1.5e-38  Score=286.82  Aligned_cols=179  Identities=23%  Similarity=0.304  Sum_probs=155.0

Q ss_pred             CcceEEecchhhchhHHHHHHHHhcCCC------------CCHHHHHH----HHHhcC-C-----CCCeEEecCCCCCCC
Q psy9355          22 EPVVYALEGSVAVAGAAMNWLRDNVGMV------------TGVEEIES----LAESHR-H-----TGDVYFVPAFSGLYA   79 (204)
Q Consensus        22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~----~a~~~~-~-----~~g~~~~P~l~G~r~   79 (204)
                      .|+.|+++++++++|.+++|+++.+...            ..|+.+++    ++++.+ +     ++|++|+|||.|+|+
T Consensus       313 ~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r~  392 (541)
T TIGR01315       313 IPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRS  392 (541)
T ss_pred             CCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccCcC
Confidence            3688999999999999999999876411            23544444    344433 3     378999999999999


Q ss_pred             CCCCCCCcEEEEcCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcE
Q psy9355          80 PYWQPDARGIICGITEDTTR---GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV  156 (204)
Q Consensus        80 P~~~~~~~g~~~Gl~~~~~~---~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv  156 (204)
                      |+|||++||.|+||+.+|++   .||+||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+|||+|+||
T Consensus       393 P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV  471 (541)
T TIGR01315       393 PIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHTIKSIFMSGGQCQNPLLMQLIADACDMPV  471 (541)
T ss_pred             CCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEecCcccCHHHHHHHHHHHCCee
Confidence            99999999999999999999   899999999999999999999987 58889999999999999999999999999999


Q ss_pred             EeccCC----------CcccccccCCHHHHHHHhhccCeEeecCcchh-hhhhccC
Q psy9355         157 GKNLTG----------GKDGGKYITDVSNASRTMLMNIETLEWDPMLC-GVWEINM  201 (204)
Q Consensus       157 ~~~~~~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~-~~y~~~~  201 (204)
                      +++...          ++++.|.|+|++++.+.|++..++|+|+++.+ +.|++.+
T Consensus       472 ~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~Y~~~y  527 (541)
T TIGR01315       472 LIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWPRGDPAKKLHDRKY  527 (541)
T ss_pred             EecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccCCcEEcCCcchhHHHHHHHH
Confidence            998863          23577899999998889988899999999998 8888755

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>PRK15027 xylulokinase; Provisional

Probab=100.00  E-value=2.9e-38  Score=281.60  Aligned_cols=186  Identities=19%  Similarity=0.302  Sum_probs=160.8

Q ss_pred             CceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcE
Q psy9355          10 GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARG   88 (204)
Q Consensus        10 g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g   88 (204)
                      +.+..+++.   .|+.|.+++.+.++|.+++|+++.++. ..++++++.+++.+ ++++++|+|||.|+|+|+||+++||
T Consensus       272 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~W~~~~~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg  347 (484)
T PRK15027        272 SAVHSFCHA---LPQRWHLMSVMLSAASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKG  347 (484)
T ss_pred             hceeeccee---cCCceEEEEEehhhHHHHHHHHHHhCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcce
Confidence            334455654   368899999999999999999998864 45777777777665 8889999999999999999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC---CC--
Q psy9355          89 IICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT---GG--  163 (204)
Q Consensus        89 ~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~---~~--  163 (204)
                      +|+||+.+|+++||+||++|||||.+++++|.+++ .|.++++|+++||++||++|+||+||++|+||++...   ++  
T Consensus       348 ~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~  426 (484)
T PRK15027        348 VFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPAL  426 (484)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHH
Confidence            99999999999999999999999999999999987 5888999999999999999999999999999966532   22  


Q ss_pred             ------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         164 ------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       164 ------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                            +++.|.++|++++. ++++..++|+||+++++.|++.+
T Consensus       427 GaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P~~~~~~~Y~~~~  469 (484)
T PRK15027        427 GAARLAQIAANPEKSLIELL-PQLPLEQSHLPDAQRYAAYQPRR  469 (484)
T ss_pred             HHHHHHHHhcCCcCCHHHHH-hhcCCCceECCCHHHHHHHHHHH
Confidence                  25778999999875 66688899999999999998754

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=100.00  E-value=1.4e-37  Score=278.57  Aligned_cols=184  Identities=22%  Similarity=0.317  Sum_probs=162.3

Q ss_pred             eeeecCCCcceEEecchhhchhHHHHHHHHhcCC----------CCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCC
Q psy9355          15 VAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGM----------VTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQ   83 (204)
Q Consensus        15 ~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~----------~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~   83 (204)
                      ++|.++  ++.|+.+++++++|.+++|+++.+..          ...|+.+++++++.+ ++++++|+|||.|+|+|+||
T Consensus       279 ~~~~~~--~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~  356 (505)
T TIGR01314       279 FCYALT--KEHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWN  356 (505)
T ss_pred             EEEEec--CCcEEEEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCC
Confidence            556544  37899999999999999999987642          134788999888776 78889999999999999999


Q ss_pred             CCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355          84 PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-  162 (204)
Q Consensus        84 ~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-  162 (204)
                      +++||+|+||+.+|+++||+||++|||||.++++++.+++..|.++++|+++||+++|++|+||+||++|+||+++... 
T Consensus       357 ~~~rg~f~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e  436 (505)
T TIGR01314       357 ANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYE  436 (505)
T ss_pred             CCccEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCCC
Confidence            9999999999999999999999999999999999999977668889999999999999999999999999999987752 


Q ss_pred             -C--------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 -G--------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 -~--------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                       +        +++.|.++|++++ .++++..++|+|++++++.|++.+
T Consensus       437 ~~a~GaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~~~~Y~~~y  483 (505)
T TIGR01314       437 SSCLGACILGLKALGLIEDFSEV-STMVGTTETHTPIEKNFEIYREIS  483 (505)
T ss_pred             cchHHHHHHHHHhcCccCCHHHH-HHhcCCCceECcCHHHHHHHHHHH
Confidence             2        2577899999986 788899999999999999998754

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>TIGR01312 XylB D-xylulose kinase

Probab=100.00  E-value=1.8e-37  Score=276.00  Aligned_cols=191  Identities=25%  Similarity=0.344  Sum_probs=169.0

Q ss_pred             CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCC
Q psy9355           8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDA   86 (204)
Q Consensus         8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~   86 (204)
                      ..+.+..++|..   |+.|++++++.++|.+++|+++.++. .+++.+++++++.+ ++++++|+||+.|+|.|+||+++
T Consensus       273 ~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~  348 (481)
T TIGR01312       273 PAGAVHGFCHAL---PGGWLPMGVTLSATSSLEWFRELFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQA  348 (481)
T ss_pred             cccceeeeeeec---CCceEEEeEehhhHHHHHHHHHHhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCc
Confidence            345566777763   57899999999999999999998863 46888999888876 77889999999999999999999


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C-
Q psy9355          87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G-  163 (204)
Q Consensus        87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~-  163 (204)
                      +|+|+|++.+|+++|++||++|||||.+|++++.|++..+.++++|+++||++||++|+||+||++|+||++++..  + 
T Consensus       349 ~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a  428 (481)
T TIGR01312       349 RGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPA  428 (481)
T ss_pred             ceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchH
Confidence            9999999999999999999999999999999999987445788999999999999999999999999999998762  1 


Q ss_pred             -------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccCC
Q psy9355         164 -------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ  202 (204)
Q Consensus       164 -------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~~  202 (204)
                             +.+.|.|+|++++.+.+++..+.|+|+++.++.|++.++
T Consensus       429 ~GaA~~a~~~~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~~  474 (481)
T TIGR01312       429 LGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYE  474 (481)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHhhccCCCceECCCHHHHHHHHHHHH
Confidence                   256788999999989999999999999999998887653

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>PRK04123 ribulokinase; Provisional

Probab=100.00  E-value=1e-37  Score=281.84  Aligned_cols=190  Identities=22%  Similarity=0.279  Sum_probs=163.7

Q ss_pred             eeeeeeecC--CCcceEEecchhhchhHHHHHHHHhcCC-----------CCCHHHHHHHHHhcC-CCCCeEEecCCCCC
Q psy9355          12 LTTVAFKLG--DEPVVYALEGSVAVAGAAMNWLRDNVGM-----------VTGVEEIESLAESHR-HTGDVYFVPAFSGL   77 (204)
Q Consensus        12 ~~~~~~~~~--~~p~~y~~~g~~~~~G~~~~W~~~~~~~-----------~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~   77 (204)
                      .+.+++.+.  -.|+.|.++++++++|.+++||++.++.           ...|+++++++++.+ ++++++|+|||.|+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ge  388 (548)
T PRK04123        309 VPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGR  388 (548)
T ss_pred             cCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCC
Confidence            445555432  2368899999999999999999998741           134788888888776 88899999999999


Q ss_pred             CCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc-cccHHHHHHHHhhhCCcE
Q psy9355          78 YAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM-TANKHLMQTQADLCGIPV  156 (204)
Q Consensus        78 r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGg-a~s~~~~Qi~Adv~g~pv  156 (204)
                      |+|+|||++||.|+||+.+|+++||+|||+|||+|.+++++|.|++ .+.++++|+++||+ +||++|+||+||++|+||
T Consensus       389 r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV  467 (548)
T PRK04123        389 RTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPVLMQIYADVLNRPI  467 (548)
T ss_pred             CCCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHHHHHHHHHhcCCce
Confidence            9999999999999999999999999999999999999999999987 68888999999999 999999999999999999


Q ss_pred             EeccCC--C--------cccccccCCHHHHHHHhh-ccCeEeecCcchhhhhhccCC
Q psy9355         157 GKNLTG--G--------KDGGKYITDVSNASRTML-MNIETLEWDPMLCGVWEINMQ  202 (204)
Q Consensus       157 ~~~~~~--~--------a~g~g~~~~~~~a~~~~~-~~~~~~~P~~~~~~~y~~~~~  202 (204)
                      +++...  +        +++.|.|+|++++.+.|+ ...++|+|+++.++.|++.++
T Consensus       468 ~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~  524 (548)
T PRK04123        468 QVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPENVARYEQLYQ  524 (548)
T ss_pred             EecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHHHHHHHHHHH
Confidence            887752  2        256788999999888887 455779999999888887653

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=100.00  E-value=3.4e-37  Score=277.73  Aligned_cols=188  Identities=21%  Similarity=0.229  Sum_probs=162.9

Q ss_pred             eeeeecC--CCcceEEecchhhchhHHHHHHHHhcCCC-----------CCHHHHHHHHHhcC-CCCCeEEecCCCCCCC
Q psy9355          14 TVAFKLG--DEPVVYALEGSVAVAGAAMNWLRDNVGMV-----------TGVEEIESLAESHR-HTGDVYFVPAFSGLYA   79 (204)
Q Consensus        14 ~~~~~~~--~~p~~y~~~g~~~~~G~~~~W~~~~~~~~-----------~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~   79 (204)
                      .+++.++  -.|+.|.++++++++|.+++|+++.+...           ..|+.|++.+++.+ ++++++|+|||.|+|+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~  387 (536)
T TIGR01234       308 GMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRS  387 (536)
T ss_pred             ceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCC
Confidence            4555432  23688999999999999999999987421           23788888887776 8889999999999999


Q ss_pred             CCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc-cccHHHHHHHHhhhCCcEEe
Q psy9355          80 PYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM-TANKHLMQTQADLCGIPVGK  158 (204)
Q Consensus        80 P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGg-a~s~~~~Qi~Adv~g~pv~~  158 (204)
                      |+||+++||.|+|++.+|++.||+|||+|||||.+++++|.|++ .|.++++|+++||+ ++|++|+||+||++|+||++
T Consensus       388 P~~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~  466 (536)
T TIGR01234       388 PLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQI  466 (536)
T ss_pred             CCCCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEe
Confidence            99999999999999999999999999999999999999999987 68889999999999 99999999999999999998


Q ss_pred             ccCC----------CcccccccCCHHHHHHHhh-ccCeEeecCcchhhhhhccCC
Q psy9355         159 NLTG----------GKDGGKYITDVSNASRTML-MNIETLEWDPMLCGVWEINMQ  202 (204)
Q Consensus       159 ~~~~----------~a~g~g~~~~~~~a~~~~~-~~~~~~~P~~~~~~~y~~~~~  202 (204)
                      +...          ++++.|.|+|++++.+.++ +..++|+|+++.++.|++.++
T Consensus       467 ~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~  521 (536)
T TIGR01234       467 VASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTPCSENAQRYEQLYA  521 (536)
T ss_pred             ccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECCChhHHHHHHHHHH
Confidence            7752          1257788999999888887 668899999999888887553

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=100.00  E-value=6.4e-35  Score=262.15  Aligned_cols=177  Identities=19%  Similarity=0.225  Sum_probs=154.4

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCC----------CCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEE
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMV----------TGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIIC   91 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~----------~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~   91 (204)
                      |+.|.+++.++++|.+++||++.+...          ..|+++++++++.| +++++  +|||.|++.|.+++.++|+|+
T Consensus       292 ~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~  369 (520)
T PRK10939        292 PGMVQAESISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFI  369 (520)
T ss_pred             CCcceEeeeeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEE
Confidence            688999999999999999999876421          34788999888876 77766  599999987655568999999


Q ss_pred             cCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC------
Q psy9355          92 GITEDT---TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG------  162 (204)
Q Consensus        92 Gl~~~~---~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~------  162 (204)
                      ||+.+|   +++||+||++|||||.+|++++.+++..|.++++|+++||+++|++|+||+|||+|+||++++..      
T Consensus       370 Gl~~~~~~~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alG  449 (520)
T PRK10939        370 NLSIDPEKCNKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALG  449 (520)
T ss_pred             ccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHH
Confidence            999987   89999999999999999999999987558889999999999999999999999999999998852      


Q ss_pred             ----CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 ----GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 ----~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                          ++++.|+|+|++++.+.+++..++|+|+++..+.|++.+
T Consensus       450 aA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~y  492 (520)
T PRK10939        450 CAIAAGVGAGIYSSLAETGERLVRWERTFEPNPENHELYQEAK  492 (520)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHcccCceECcCHHHHHHHHHHH
Confidence                235778999999998899888999999999988888754

>PRK10331 L-fuculokinase; Provisional

Probab=100.00  E-value=1.1e-32  Score=245.02  Aligned_cols=167  Identities=20%  Similarity=0.151  Sum_probs=143.8

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCC-CCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHH
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGM-VTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRG  100 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~-~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~  100 (204)
                      ++.|..++.... |.+++|+++.++. ...|+.|++++++.+ ++++++|+|+|.|+|        ||+|+||+.+|+++
T Consensus       291 ~~~~~~~~~~~~-g~~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~  361 (470)
T PRK10331        291 SGLYNPGMQWLA-SGVLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRG  361 (470)
T ss_pred             CceeeechhhHH-HHHHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHH
Confidence            567766554444 4589999998753 245889999888776 888999999999887        99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC----------Cccccccc
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG----------GKDGGKYI  170 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~----------~a~g~g~~  170 (204)
                      ||+||++|||||++|+++|.|++..+.++++|+++||++||++|+||+||++|+||++++..          ++++.|.|
T Consensus       362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~  441 (470)
T PRK10331        362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEF  441 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCC
Confidence            99999999999999999999987435678999999999999999999999999999988762          13578999


Q ss_pred             CCHHHHHHHhhccCeEeecCcchhhhhhc
Q psy9355         171 TDVSNASRTMLMNIETLEWDPMLCGVWEI  199 (204)
Q Consensus       171 ~~~~~a~~~~~~~~~~~~P~~~~~~~y~~  199 (204)
                      +|++++.+.|.+..++|+|+ .+.+.|++
T Consensus       442 ~~~~~a~~~~~~~~~~~~P~-~~~~~y~~  469 (470)
T PRK10331        442 SSPEQARAQMKYQYRYFYPQ-TEPEFIEE  469 (470)
T ss_pred             CCHHHHHHHHhhcceeECCC-ccHhhhhc
Confidence            99999988998878899999 78888875

>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=100.00  E-value=3.4e-32  Score=215.54  Aligned_cols=161  Identities=37%  Similarity=0.639  Sum_probs=134.6

Q ss_pred             CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCC---CCC----HHHHHH--HHHhcCCCCCeEEecCCCC
Q psy9355           6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGM---VTG----VEEIES--LAESHRHTGDVYFVPAFSG   76 (204)
Q Consensus         6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~---~~~----~~~l~~--~a~~~~~~~g~~~~P~l~G   76 (204)
                      .+..+++..+.-..  .|+.|+++++.+++|..++|+++.++.   ..+    ++.++.  ..+..++..+++|+|++.|
T Consensus        20 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G   97 (198)
T PF02782_consen   20 ISPPGFWNPFADHV--IPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEAAASPPGSGGVFFLPFLSG   97 (198)
T ss_dssp             TTSSSSEEEEEEET--SEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHHHHTSSTCTTSEEEECTTG
T ss_pred             cCCCeeEEeecCcC--CCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHhhhccCcccceeeeecccc
Confidence            35677888777321  378999999999999999999999753   111    133332  2233347788999999999


Q ss_pred             CCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcE
Q psy9355          77 LYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV  156 (204)
Q Consensus        77 ~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv  156 (204)
                      +|+|+||++++|+|+|++.+|++.|++|||+||++|.++++++.|++..+.++++|+++||+++|++|+|++||++|+||
T Consensus        98 ~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V  177 (198)
T PF02782_consen   98 ERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPV  177 (198)
T ss_dssp             BCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEE
T ss_pred             CcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCce
Confidence            99999999999999999999999999999999999999999999998669999999999999999999999999999999


Q ss_pred             EeccCC--Cccccc
Q psy9355         157 GKNLTG--GKDGGK  168 (204)
Q Consensus       157 ~~~~~~--~a~g~g  168 (204)
                      .+++..  ++.|+.
T Consensus       178 ~~~~~~e~~a~GaA  191 (198)
T PF02782_consen  178 VRPEVEEASALGAA  191 (198)
T ss_dssp             EEESSSTHHHHHHH
T ss_pred             EeCCCCchHHHHHH
Confidence            998763  344443

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....

>KOG2517|consensus

Probab=99.97  E-value=5.7e-32  Score=237.06  Aligned_cols=195  Identities=42%  Similarity=0.594  Sum_probs=164.2

Q ss_pred             CcCCCCCCceeeeeeecCC-CcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCC
Q psy9355           3 FKVDSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPY   81 (204)
Q Consensus         3 ~~~~~~~g~~~~~~~~~~~-~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~   81 (204)
                      ++..+.+|++++++|+++. .+-.|++||....+|..++|+++.+++.....++++++..+....+++|.|.|.|.|+|+
T Consensus       288 ~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~  367 (516)
T KOG2517|consen  288 YFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPY  367 (516)
T ss_pred             ccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccCceEEEccccCCCCCC
Confidence            3456678999999999973 244699999999999999999999877556667777777777788899999999999999


Q ss_pred             CCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355          82 WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus        82 ~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      |||++||.|+|++.+++..||+||++|+|+|++|+++|.+++..+.++++++++||.++|++++|+.||++|+||+++..
T Consensus       368 ~d~~arg~i~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~  447 (516)
T KOG2517|consen  368 ADPTARGVIIGLSQDTSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQD  447 (516)
T ss_pred             CCcccceeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccc
Confidence            99999999999999999999999999999999999999999864479999999999999999999999999999999987


Q ss_pred             CC----------cccccc--cCCHHHHHHHhhccCeEeecCcchhhhhhcc
Q psy9355         162 GG----------KDGGKY--ITDVSNASRTMLMNIETLEWDPMLCGVWEIN  200 (204)
Q Consensus       162 ~~----------a~g~g~--~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~  200 (204)
                      ..          +.+.|.  |.+.+++.  +....+.|.|+.+- +.++.+
T Consensus       448 ~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P~~~~-~~~~~k  495 (516)
T KOG2517|consen  448 VEAVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRPNIDD-KLLDKK  495 (516)
T ss_pred             hhHHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecCCCCc-HHHHHH
Confidence            31          133454  44555543  56788999999764 433333

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=99.97  E-value=1.4e-31  Score=233.46  Aligned_cols=191  Identities=25%  Similarity=0.303  Sum_probs=161.4

Q ss_pred             CceeeeeeecCC--CcceEEecchhhchhHHHHHHHHhcCCC--------CC----H-------HHHHHHHHhc-CCCCC
Q psy9355          10 GLLTTVAFKLGD--EPVVYALEGSVAVAGAAMNWLRDNVGMV--------TG----V-------EEIESLAESH-RHTGD   67 (204)
Q Consensus        10 g~~~~~~~~~~~--~p~~y~~~g~~~~~G~~~~W~~~~~~~~--------~~----~-------~~l~~~a~~~-~~~~g   67 (204)
                      -.+++||-.+..  .||.|++||+++++|..++||.+...-.        .+    +       ..|++.+.+. +..++
T Consensus       289 ~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  368 (544)
T COG1069         289 RFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASG  368 (544)
T ss_pred             eecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCC
Confidence            456677766642  4999999999999999999999875210        11    1       2233333333 37889


Q ss_pred             eEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHH
Q psy9355          68 VYFVPAFSGLYAPYWQPDARGIICGITEDTTRG---HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHL  144 (204)
Q Consensus        68 ~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~---~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~  144 (204)
                      ++++|++.|.|+|+-||+++|+|+|++++|+.+   .+++|.+|+++|..|.++|.+++ .|.++++|+++||..||++|
T Consensus       369 l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~Id~l~~sGG~~KN~ll  447 (544)
T COG1069         369 LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED-QGIAIDTLFASGGIRKNPLL  447 (544)
T ss_pred             cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH-cCCeeeEEEecCCcccCHHH
Confidence            999999999999999999999999999999999   89999999999999999999988 69999999999999999999


Q ss_pred             HHHHHhhhCCcEEeccCC----------CcccccccCCHHHHHHHhhccCeEeecCc-chhhhhhccC
Q psy9355         145 MQTQADLCGIPVGKNLTG----------GKDGGKYITDVSNASRTMLMNIETLEWDP-MLCGVWEINM  201 (204)
Q Consensus       145 ~Qi~Adv~g~pv~~~~~~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~-~~~~~y~~~~  201 (204)
                      ||++||++|+||+++...          +++++|.|.|+..|+++|.+..++..|++ +..+.|++.+
T Consensus       448 mql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~~~~~~~~~~~~~~~y~~ly  515 (544)
T COG1069         448 MQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLPPPPERAARYERLY  515 (544)
T ss_pred             HHHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcccceecCChHHHHHHHHHHH
Confidence            999999999999998763          24677899999999999999888888887 7777777654

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.2e-30  Score=230.78  Aligned_cols=188  Identities=26%  Similarity=0.351  Sum_probs=152.8

Q ss_pred             CceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhc--C-CCCCeEEecCCCCCCCCCCCCCC
Q psy9355          10 GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESH--R-HTGDVYFVPAFSGLYAPYWQPDA   86 (204)
Q Consensus        10 g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~--~-~~~g~~~~P~l~G~r~P~~~~~~   86 (204)
                      +.+.+.|+.   .|+.|+..+..+++|.+++|+++.++...++.++...+...  + +..++.|.||+.|+|.|.+++.+
T Consensus       283 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~  359 (502)
T COG1070         283 GSIYTFCLG---LPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAA  359 (502)
T ss_pred             cceeeeccc---CCCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccc
Confidence            344444443   36788889999999999999999988643444444333332  2 67889999999999999999999


Q ss_pred             cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC--CCc
Q psy9355          87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT--GGK  164 (204)
Q Consensus        87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~--~~a  164 (204)
                      |+.|+|++..|+++|++||++||++|.+++.++.|++..+.++++|+++||++||++|+||+||++|+||.++..  .++
T Consensus       360 r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a  439 (502)
T COG1070         360 RGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGA  439 (502)
T ss_pred             eeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchH
Confidence            999999999999999999999999999999999999976899999999999999999999999999999998874  221


Q ss_pred             ---------ccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         165 ---------DGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       165 ---------~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                               .+.+++++.+++.+.+.. .+++.||++..+.|++.+
T Consensus       440 ~g~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~y~~~~  484 (502)
T COG1070         440 LGGAALAAAALGGIYDSAEGALKAVVD-ARRIIPDPERAAAYQELY  484 (502)
T ss_pred             HHHHHHHHHHhCCCCccHHHHhhcccc-ccccCCChHHHHHHHHHH
Confidence                     123445555665555544 889999999988888764

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=99.97  E-value=7.2e-30  Score=226.69  Aligned_cols=160  Identities=23%  Similarity=0.218  Sum_probs=133.9

Q ss_pred             CcceEEecchhhchhHHHHHHHHhcCCC----CC-HHHHHHHHHhcC-CCCCeE-EecCCCCCCCCCCCCCCcEEEEcCC
Q psy9355          22 EPVVYALEGSVAVAGAAMNWLRDNVGMV----TG-VEEIESLAESHR-HTGDVY-FVPAFSGLYAPYWQPDARGIICGIT   94 (204)
Q Consensus        22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~~----~~-~~~l~~~a~~~~-~~~g~~-~~P~l~G~r~P~~~~~~~g~~~Gl~   94 (204)
                      .++.|..++...++| +++|+++.+...    .+ |++|++.+++.+ ++++++ |+|++.        |.++|+|+||+
T Consensus       289 ~~g~~~~~~~~~~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~  359 (465)
T TIGR02628       289 QAGLYNPAMQWLASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLT  359 (465)
T ss_pred             CCceeeehhhhhhhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCC
Confidence            367787665555555 899999876421    12 688899888776 788888 888753        57799999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC----------Cc
Q psy9355          95 EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG----------GK  164 (204)
Q Consensus        95 ~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~----------~a  164 (204)
                      .+|++.||+||++|||||.+|+++|.+++..+.++++|+++||+++|++|+||+||++|+||++++..          ++
T Consensus       360 ~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~  439 (465)
T TIGR02628       360 LNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGF  439 (465)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHH
Confidence            99999999999999999999999999987435678999999999999999999999999999988752          23


Q ss_pred             ccccccCCHHHHHHHhhccCeEeecC
Q psy9355         165 DGGKYITDVSNASRTMLMNIETLEWD  190 (204)
Q Consensus       165 ~g~g~~~~~~~a~~~~~~~~~~~~P~  190 (204)
                      ++.|+|+|++++.+.+++..++|+|+
T Consensus       440 ~a~G~~~~~~~a~~~~~~~~~~~~P~  465 (465)
T TIGR02628       440 YGVGEYNSPEEAQAQMHPQYRYFYPQ  465 (465)
T ss_pred             HhcCccCCHHHHHHHhhccceeeCCC
Confidence            67889999999988998888899996

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PRK10640 rhaB rhamnulokinase; Provisional

Probab=99.96  E-value=4.2e-29  Score=222.06  Aligned_cols=169  Identities=18%  Similarity=0.207  Sum_probs=136.1

Q ss_pred             CcceEEecchhhchhHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC-CCcEEEEcCCCCC
Q psy9355          22 EPVVYALEGSVAVAGAAMNWLRDNVGM---VTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP-DARGIICGITEDT   97 (204)
Q Consensus        22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~---~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~-~~~g~~~Gl~~~~   97 (204)
                      .++.|.++..+.  |   +|+++.+..   ..+|+++.+++++.+++++++ +|  .|+|.  ||| ++||+|+|++..|
T Consensus       269 ~~g~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~g~~gli-~p--~ger~--~~~~~arg~~~gl~~~~  338 (471)
T PRK10640        269 AEGRYRVLKNIM--G---LWLLQRVLQERQITDLPALIAATAALPACRFLI-NP--NDDRF--INPPSMCSEIQAACRET  338 (471)
T ss_pred             CCceEEEecchh--H---HHHHHHHHHHhccCCHHHHHHHHHhCCCCCcee-CC--Ccccc--cCchhhHHHHHHHHHHh
Confidence            357776666443  3   899987641   246888888888778778876 68  68884  675 8999996666655


Q ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC-CC-------
Q psy9355          98 ------TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT-GG-------  163 (204)
Q Consensus        98 ------~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~-~~-------  163 (204)
                            +++||+|||+|||||.+++++|.|++..+.++++|+++||+++|++|+||+||++|+||.+.+. ++       
T Consensus       339 G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~ea~alGaa~~  418 (471)
T PRK10640        339 AQPVPESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGI  418 (471)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCChhHHHHHHHHH
Confidence                  9999999999999999999999998755778899999999999999999999999999988776 21       


Q ss_pred             -cccccccCCHHHHHHHhhc---cCeEeecCcc--hhhhhhccC
Q psy9355         164 -KDGGKYITDVSNASRTMLM---NIETLEWDPM--LCGVWEINM  201 (204)
Q Consensus       164 -a~g~g~~~~~~~a~~~~~~---~~~~~~P~~~--~~~~y~~~~  201 (204)
                       +++.|.++|++++ +++++   ..++|+||++  |.+.|.+.+
T Consensus       419 a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~~~~~~~~~  461 (471)
T PRK10640        419 QLMTLDELNNVDDF-RQVVSTNFPLTTFTPNPDSEIARHVAQFQ  461 (471)
T ss_pred             HHHHcCCcCCHHHH-HHHHHhcCCceEEcCCChHHHHHHHHHHH
Confidence             2578899999876 67777   5789999986  777776543

>PLN02669 xylulokinase

Probab=99.94  E-value=1.7e-26  Score=208.83  Aligned_cols=137  Identities=16%  Similarity=0.104  Sum_probs=123.1

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCC----CCCCCcEEEEcCCCC-
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPY----WQPDARGIICGITED-   96 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~----~~~~~~g~~~Gl~~~-   96 (204)
                      |+.|+.+++..++|.+++|+++.+. ..+|+.+++++++.+ +++|++++||+.|++.|+    +++.++|.|.|++.+ 
T Consensus       329 ~~~y~~~~~~~ngg~~~~w~r~~~~-~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~  407 (556)
T PLN02669        329 PESYMVMLCYKNGSLTREDIRNRCA-DGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDG  407 (556)
T ss_pred             CCCeEEEEEecchHHHHHHHHHHhc-cCcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCccchhhhccccCccccc
Confidence            6889999999999999999999885 246888999887776 778899899999999996    567788999999887 


Q ss_pred             --------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355          97 --------TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG  162 (204)
Q Consensus        97 --------~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~  162 (204)
                              |+++|++|||+||++|++|.+++.|+  .+.++++|+++||+++|++|+||+|||+|+||++++..
T Consensus       408 ~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~--~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~  479 (556)
T PLN02669        408 LVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG--MPVPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP  479 (556)
T ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC
Confidence                    69999999999999999999999995  35678999999999999999999999999999998763

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=99.91  E-value=3.7e-24  Score=189.66  Aligned_cols=147  Identities=17%  Similarity=0.208  Sum_probs=112.9

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC-CcEE------EEc
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGM---VTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD-ARGI------ICG   92 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~---~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~-~~g~------~~G   92 (204)
                      ++.|.+.+... ++    |+++.+..   ...|+++++.+...|     .+.|++.+++.|+|+|. +++.      |+|
T Consensus       282 ~~~~~~~~~~~-g~----W~~~~~~~~~~~~~~~~l~~~a~~~p-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G  351 (454)
T TIGR02627       282 DGRYRVLKNIM-GL----WLLQRVCRERDINDLPALIEQAQALP-----AFKSIINPNDDRFINPENMCEEIQAYCRETN  351 (454)
T ss_pred             ccEEEeecchh-hh----HHHHHHHhhhccccHHHHHHHhcCCC-----CCCeeeCCCcccccChhhhHHHHHHHHHHcC
Confidence            56676665443 33    65554421   235667776665443     23366678899999995 4444      499


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-C--------
Q psy9355          93 ITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-G--------  163 (204)
Q Consensus        93 l~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-~--------  163 (204)
                      |+.+|+++||+|||+|||||.+|+++|.|++..+.++++|+++||+++|++|+||+||++|+||.+.... +        
T Consensus       352 l~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~e~~a~GaA~~a  431 (454)
T TIGR02627       352 QPIPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADACGIRVIAGPVEASTLGNIGVQ  431 (454)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHhCCceEcCCchHHHHHHHHHH
Confidence            9999999999999999999999999999987447788999999999999999999999999999876642 2        


Q ss_pred             cccccccCCHHHHHHH
Q psy9355         164 KDGGKYITDVSNASRT  179 (204)
Q Consensus       164 a~g~g~~~~~~~a~~~  179 (204)
                      +++.|.|++++++.+.
T Consensus       432 ~~~~G~~~~~~~~~~~  447 (454)
T TIGR02627       432 LMALDEINDMAAFRQI  447 (454)
T ss_pred             HHhcCCcCCHHHHHHH
Confidence            2577899999887443

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>KOG2531|consensus

Probab=99.13  E-value=5.6e-10  Score=96.59  Aligned_cols=142  Identities=15%  Similarity=0.130  Sum_probs=104.8

Q ss_pred             eeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEE-
Q psy9355          13 TTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGII-   90 (204)
Q Consensus        13 ~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~-   90 (204)
                      +.+|+-+.  |..|+..-+..+|+.+-+=.++... ..+|+.+++...+.+ |.+|.+-+-|-.+|-.|.   ...|.. 
T Consensus       320 Hvf~hP~~--~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~---~~~G~~R  393 (545)
T KOG2531|consen  320 HVFCHPTD--PNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPS---VPKGTLR  393 (545)
T ss_pred             ceeccCCC--ccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCCCceeEecccccccCC---CCccceE
Confidence            34555443  6789888888889888888887643 368999999888776 666654333334676662   112221 


Q ss_pred             ------------EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355          91 ------------CGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK  158 (204)
Q Consensus        91 ------------~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~  158 (204)
                                  .++....++.+-+||++||-....|.+.+.|.-. ..+.++|+++||.|+|....|++|||+|.||.+
T Consensus       394 ~~~~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~~-~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~  472 (545)
T KOG2531|consen  394 FIFENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPLGFK-SNPPTRILVTGGASRNEAILQIIADVFGAPVYT  472 (545)
T ss_pred             EEecCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccccCC-CCCCceEEEecCccccHHHHHHHHHHhCCCeEe
Confidence                        1333445688899999999999999999887531 236789999999999999999999999999998


Q ss_pred             ccC
Q psy9355         159 NLT  161 (204)
Q Consensus       159 ~~~  161 (204)
                      -+.
T Consensus       473 ~~~  475 (545)
T KOG2531|consen  473 IEG  475 (545)
T ss_pred             ecC
Confidence            754

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.55  E-value=2.1e-07  Score=76.49  Aligned_cols=114  Identities=20%  Similarity=0.281  Sum_probs=78.8

Q ss_pred             hhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q psy9355          32 VAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAIC  111 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia  111 (204)
                      ...+|.-++-+.+.++.  +++++++++.+..  .     |.-.+.+...+-  ....+..+....++++++++++++++
T Consensus       123 a~Gtg~f~e~~a~~l~~--~~~e~~~~~~~~~--~-----~~~~~~~c~vf~--~s~vi~~l~~g~~~~di~~~~~~~va  191 (248)
T TIGR00241       123 AAGTGRFLEVTARRLGV--SVEELGSLAEKAD--R-----KAKISSMCTVFA--ESELISLLAAGVKKEDILAGVYESIA  191 (248)
T ss_pred             cccccHHHHHHHHHcCC--CHHHHHHHHhcCC--C-----CCCcCCEeEEEe--chhHHHHHHCCCCHHHHHHHHHHHHH
Confidence            33456677777777775  6788887765421  1     211111111111  01222345556789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcc-eEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355         112 FQTRDILEAMKKDCGIQLI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLTG  162 (204)
Q Consensus       112 ~~~~~~~e~l~~~~g~~~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~  162 (204)
                      +.+...+..+      +++ +|+++||+++|+.|.+.+++.+++||.+++..
T Consensus       192 ~~i~~~~~~~------~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~  237 (248)
T TIGR00241       192 ERVAEMLQRL------KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEP  237 (248)
T ss_pred             HHHHHHHhhc------CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCc
Confidence            9999865432      244 79999999999999999999999999998875

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>PRK13317 pantothenate kinase; Provisional

Probab=98.21  E-value=6.9e-05  Score=62.63  Aligned_cols=142  Identities=14%  Similarity=0.098  Sum_probs=96.3

Q ss_pred             eEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEEc-----CCCCCC
Q psy9355          25 VYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIICG-----ITEDTT   98 (204)
Q Consensus        25 ~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~G-----l~~~~~   98 (204)
                      .+.-.+++..||..+.=+.+.+-...+++++.+++.+-. ..-++ .+-.+.+...+....+.+.+.+|     ++...+
T Consensus       116 ~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl-~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~  194 (277)
T PRK13317        116 SQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDL-KVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFT  194 (277)
T ss_pred             ceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccc-eeccccCCCCCCCCCceeEehhhhhhhhhccCCC
Confidence            455556676777766666666533468999999998643 22222 23444443233335566666655     344578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEec-CccccHHHHHHHHhhh---CCcEEeccCC---Ccccccc
Q psy9355          99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDG-GMTANKHLMQTQADLC---GIPVGKNLTG---GKDGGKY  169 (204)
Q Consensus        99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~G-Gga~s~~~~Qi~Adv~---g~pv~~~~~~---~a~g~g~  169 (204)
                      ++|++++++..++..+....-.+.+.  ...++|+.+| |.++|+.+++.+++.+   +.++.+|++.   +|+|+.+
T Consensus       195 ~eDIaasl~~~v~~~I~~lA~~~ar~--~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL  270 (277)
T PRK13317        195 SSDILAGVIGLVGEVITTLSIQAARE--KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALL  270 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHH
Confidence            99999999999988887764444332  3457899999 6889999999999999   7889998874   4566544

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=97.52  E-value=0.0077  Score=50.38  Aligned_cols=135  Identities=13%  Similarity=0.078  Sum_probs=91.4

Q ss_pred             eEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCC--CCCCCCCCCcEEEEc-C-----CC
Q psy9355          25 VYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGL--YAPYWQPDARGIICG-I-----TE   95 (204)
Q Consensus        25 ~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~--r~P~~~~~~~g~~~G-l-----~~   95 (204)
                      .|--.+++..||+++-=+...+....+++++.++|++-. ..-.+ .+-++.|.  ..+.-..+..++-+| +     +.
T Consensus       121 ~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl-~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~  199 (279)
T TIGR00555       121 NYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDL-LVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQ  199 (279)
T ss_pred             cEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCccccc-ccccccCCCCCCCCCCcceeeeccchhhcccccc
Confidence            566666777777776666666654578999999998643 11122 24445542  122235566777777 3     34


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecC-ccccHHHHHHHHhhhC---CcEEeccCC
Q psy9355          96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGG-MTANKHLMQTQADLCG---IPVGKNLTG  162 (204)
Q Consensus        96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GG-ga~s~~~~Qi~Adv~g---~pv~~~~~~  162 (204)
                      ..+++|++++++..|+..+-..--....  ....++|+..|| ...++.+++.++..++   ..+..|+++
T Consensus       200 ~~~~eDiAaSLl~mV~~nIg~lA~~~a~--~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~  268 (279)
T TIGR00555       200 SFSPEDIAASLLGLIGNNIGQIAYLCAL--RYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHE  268 (279)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCc
Confidence            4679999999999999977665433322  245789999999 5678999999998876   556677764

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=97.21  E-value=0.0014  Score=56.32  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=85.6

Q ss_pred             cceEE-ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEE------cCCC
Q psy9355          23 PVVYA-LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIIC------GITE   95 (204)
Q Consensus        23 p~~y~-~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~------Gl~~   95 (204)
                      +..|. .+-+...+|+-++=+.+.++.  +.+++.+.+....  . +   +-++ .+        ...|.      =+..
T Consensus       251 v~df~mN~~CAAGtGrFLE~~A~~Lgv--~v~E~~~~A~~~~--~-~---v~i~-S~--------CaVF~eSevi~~~~~  313 (396)
T COG1924         251 VDDFTMNDKCAAGTGRFLEVIARRLGV--DVEELGKLALKAT--P-P---VKIN-SR--------CAVFAESEVISALAE  313 (396)
T ss_pred             eeeeEeccccccccchHHHHHHHHhCC--CHHHHHHHHhcCC--C-C---cccC-Ce--------eEEEehHHHHHHHHc
Confidence            33344 445677788889988888885  6888888877532  1 0   1111 11        12221      1234


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcce-EEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355          96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI  170 (204)
Q Consensus        96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~  170 (204)
                      ..+++++..++.++++-+....  .+++   ++++. |++.||.+.|..+...+.|.+|++|.+|+..   +|+|+.++
T Consensus       314 G~~~EdI~AGl~~Sv~~~v~~~--~~~~---~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~  387 (396)
T COG1924         314 GASPEDILAGLAYSVAENVAEK--VIKR---VDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALI  387 (396)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH--Hhhc---cCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHH
Confidence            5789999999999988655431  2322   23333 9999999999999999999999999999985   56666554

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=96.94  E-value=0.003  Score=55.08  Aligned_cols=121  Identities=17%  Similarity=0.243  Sum_probs=80.7

Q ss_pred             ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEE------cCCCCCCHHH
Q psy9355          28 LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIIC------GITEDTTRGH  101 (204)
Q Consensus        28 ~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~------Gl~~~~~~~~  101 (204)
                      ..-+...+|.-++-..+.++.  +.+++.+++.+..  +     |.--+.+        ..+|.      =+....+++|
T Consensus       296 NDKCAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~--~-----pv~ISS~--------CtVFAESEVIslla~G~~reD  358 (432)
T TIGR02259       296 NDRCAAGCGRYLGYIADEMNM--GLHELGPLAMKSS--K-----PARINST--------CTVFAGAELRDRLALGDKRED  358 (432)
T ss_pred             cCcccccchHHHHHHHHHcCC--CHHHHHHHHhcCC--C-----CCCcCCc--------ceEEehHHHHHHHHCCCCHHH
Confidence            344555677888888888875  5777777665431  1     1111122        22331      1234578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-----CCcEEeccCC---Ccccccc
Q psy9355         102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-----GIPVGKNLTG---GKDGGKY  169 (204)
Q Consensus       102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-----g~pv~~~~~~---~a~g~g~  169 (204)
                      +++++..+|+-.+...+..+.    ..-+.|.++||.++|+.+.+.+.+.+     +.+|.+|+..   +|+|+.+
T Consensus       359 IaAGL~~SIA~Rv~s~l~r~~----~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL  430 (432)
T TIGR02259       359 ILAGLHRAIILRAISIISRSG----GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASE  430 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhccc----CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHH
Confidence            999999999886665543331    12357999999999999999999999     5788888774   4555543

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=96.91  E-value=0.0064  Score=53.18  Aligned_cols=125  Identities=17%  Similarity=0.256  Sum_probs=80.3

Q ss_pred             hhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy9355          31 SVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAI  110 (204)
Q Consensus        31 ~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgi  110 (204)
                      +...+|+-++-+.+.++.  +.+++.+++.+.. .+     |.-.+.+.-.+..  ...+.=++...+++|+++++..+|
T Consensus       272 CAAGTGrFLE~~A~~Lgi--~ieEl~~lA~~~~-~~-----pv~IsS~CtVFae--SevIsll~~G~~~eDIaAGl~~SI  341 (404)
T TIGR03286       272 CAGASGRFLEMTAKRLGV--DITELGKLALKGM-PE-----KVRMNSYCIVFGI--QDLVTALAEGASPEDVAAAACHSV  341 (404)
T ss_pred             ccccCcHHHHHHHHHhCC--CHHHHHHHHHhCC-CC-----CCCccCccccccc--HhHHHHHHCCCCHHHHHHHHHHHH
Confidence            344578888888888865  6888888775431 01     1111111111110  111111223478999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCc-ceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355         111 CFQTRDILEAMKKDCGIQL-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI  170 (204)
Q Consensus       111 a~~~~~~~e~l~~~~g~~~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~  170 (204)
                      +-++...  .+++   .++ +.|+++||.++|+.+...+.+.+|.+|.+|+..   +|+|+.++
T Consensus       342 a~rv~~~--l~~~---~~i~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~  400 (404)
T TIGR03286       342 AEQVYEQ--QLQE---IDVREPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALL  400 (404)
T ss_pred             HHHHHHH--Hhhc---CCCCCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHH
Confidence            9876641  1222   233 459999999999999999999999999999884   45555443

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=96.88  E-value=0.0078  Score=50.60  Aligned_cols=128  Identities=13%  Similarity=0.210  Sum_probs=78.8

Q ss_pred             ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHH
Q psy9355          28 LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAAL  107 (204)
Q Consensus        28 ~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvl  107 (204)
                      ..-+...+|+-++=..+.++.  +.+++.+++.... .+     |.--+.++-.+...  -.+.=+....+++|+++++.
T Consensus       154 NdkCAAGTGrFLE~~A~~Lgi--~leel~~~a~~~~-~~-----p~~Iss~CtVFAeS--evi~l~~~G~~~edI~aGl~  223 (293)
T TIGR03192       154 NDKCAAGTGRGMEVISDLMQI--PIADLGPRSFDVE-TE-----PEAVSSICVVFAKS--EALGLLKAGYTKNMVIAAYC  223 (293)
T ss_pred             cCcccccccHHHHHHHHHcCC--CHHHHHHHHHhcC-CC-----CCCcCCcceEeccH--hHHHHHHCCCCHHHHHHHHH
Confidence            334455667778887777775  5677777653211 01     21111222111110  00111234578999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEE-eccC---CCccccccc
Q psy9355         108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVG-KNLT---GGKDGGKYI  170 (204)
Q Consensus       108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~-~~~~---~~a~g~g~~  170 (204)
                      ++|+-++..   .+++ .+. -+.|+++||.++|+.+.+.+.+.++++|. .|+.   .+|+|+.++
T Consensus       224 ~sia~rv~~---~~~~-~~i-~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~  285 (293)
T TIGR03192       224 QAMAERVVS---LLER-IGV-EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALF  285 (293)
T ss_pred             HHHHHHHHH---Hhcc-cCC-CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHH
Confidence            999976543   3333 232 24589999999999999999999999998 4443   356676654

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.024  Score=48.45  Aligned_cols=129  Identities=22%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             ceEEecchhh--chhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCC-----
Q psy9355          24 VVYALEGSVA--VAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITE-----   95 (204)
Q Consensus        24 ~~y~~~g~~~--~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~-----   95 (204)
                      |.|-+.|.+.  ..|.+++-+.+.+|+. ..-..++++|++-.  ..-+.+|+-.     .+.+...=+|.||..     
T Consensus       147 g~y~ilGeTlDdA~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~--~~~~~fP~~~-----~~~~~~DfSFSGLkTa~~~~  219 (342)
T COG0533         147 GRYEVLGETLDDAAGEAFDKVARLLGLGYPGGPAIEKLAKKGD--PDAFEFPRPM-----VKGKNLDFSFSGLKTAVLRL  219 (342)
T ss_pred             CcEEEEeeechhhhhHHHHHHHHHhCCCCCCcHHHHHHHhcCC--CCceeCCccc-----cCCCCcceehHhHHHHHHHH
Confidence            6676666543  5789999999999873 22248899988642  2236677621     112223345555542     


Q ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355          96 -----------DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus        96 -----------~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                                 ..++++++++.-|.+.-.+.+..+..-+.  ...+++++.||.+.|..+++++.++.   |..+..|+.
T Consensus       220 ~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~--~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~  297 (342)
T COG0533         220 LKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERALKH--TGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL  297 (342)
T ss_pred             HHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh
Confidence                       12467799999888887777776665443  35788999999999999999999876   445777765

>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed

Probab=96.70  E-value=0.0063  Score=52.76  Aligned_cols=60  Identities=18%  Similarity=0.097  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355          97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus        97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      .+++|+++-+.|=.|.++.+.+..+.    .+.++|+++|||++|+.+++.+.+.+..+|...+
T Consensus       259 ~s~~D~~aTlt~~TA~sI~~~~~~~~----~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~  318 (365)
T PRK09585        259 LSPEDVQATLTELTAASIARAVRRLP----PGPDELLVCGGGARNPTLMERLAALLPTEVATTD  318 (365)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHH
Confidence            47899999999977877777775442    2346899999999999999999999865555433

>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P

Probab=96.63  E-value=0.011  Score=51.21  Aligned_cols=60  Identities=20%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCC-cEEeccC
Q psy9355          98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI-PVGKNLT  161 (204)
Q Consensus        98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~-pv~~~~~  161 (204)
                      +++|+.+-+.|=.|.++.+.++.+.    .++++|+++|||++|+.+++.+...+.. +|...+.
T Consensus       258 ~~~D~~aTlt~~TA~sI~~~i~~~~----~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~  318 (364)
T PF03702_consen  258 SPEDILATLTEFTAQSIADAIRRFP----PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDE  318 (364)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHH-----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGG
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcC----CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHH
Confidence            6999999999988887777776653    3478999999999999999999998875 7766554

It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=96.54  E-value=0.0073  Score=49.37  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ++++.+++.+.-.+++.++   +   .+++.|+++||+|+.+.+.+.+.+.+|.||.++.+
T Consensus       173 ~~i~~~~~~i~~~i~~~l~---~---~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~  227 (239)
T TIGR02529       173 PVVKPVYQKMASIVKRHIE---G---QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQH  227 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH---h---CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCC
Confidence            4556666666665555443   2   35679999999999999999999999999987665

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.43  E-value=0.015  Score=48.11  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHH
Q psy9355          28 LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAAL  107 (204)
Q Consensus        28 ~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvl  107 (204)
                      ..-+...+|.-++-..+.++.  +.+++.+++....  +     |.--+.+...+....  .+.=+....+++|++.++.
T Consensus       126 NdkCAAGTG~FLe~~A~~L~i--~leel~~~a~~~~--~-----~~~iss~CtVFaeSe--vi~~~~~G~~~edI~aGl~  194 (262)
T TIGR02261       126 TSQCASGSGQFLENIARYLGI--AQDEIGSLSQQAD--N-----PEKVSGICAVLAETD--VINMVSRGISAPNILKGIH  194 (262)
T ss_pred             cCcccccccHHHHHHHHHhCC--CHHHHHHHHhcCC--C-----CCCcCCCceEEchhh--HHHHHHCCCCHHHHHHHHH
Confidence            334455678888888888875  5777777665331  1     111112221111100  0011234578999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC
Q psy9355         108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG  153 (204)
Q Consensus       108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g  153 (204)
                      .+|+-.+...+.   + .+...++|+++||.++|+.+.+.+.+.++
T Consensus       195 ~sia~r~~~~~~---~-~~~~~~~v~~~GGva~n~~~~~~le~~l~  236 (262)
T TIGR02261       195 ESMADRLAKLLK---S-LGALDGTVLCTGGLALDAGLLEALKDAIQ  236 (262)
T ss_pred             HHHHHHHHHHHh---c-cCCCCCcEEEECcccccHHHHHHHHHHhc
Confidence            999986654433   3 23334569999999999999999999884

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=96.29  E-value=0.014  Score=50.11  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355          99 RGHIVRAALEAICFQTRDILEAMKKD-CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus        99 ~~~l~rAvlEgia~~~~~~~e~l~~~-~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ..+.++.+++-++-++++.++.+... .+.++++|+++|||++.+-+.+.+++.||.||.+...
T Consensus       244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p  307 (340)
T PF11104_consen  244 DQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINP  307 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcCh
Confidence            45788999999999999999976553 3567999999999999999999999999999998664

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=96.18  E-value=0.011  Score=49.05  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      .++++..+|-+.-.+++.++      ..+++.|+++||+|+.+-+.+++++.+|.||.++..
T Consensus       199 ~~ii~~~~~~i~~~i~~~l~------~~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~  254 (267)
T PRK15080        199 FPVVKPVVEKMASIVARHIE------GQDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQH  254 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHh------cCCCCEEEEECCcccchhHHHHHHHHhCCCcccCCC
Confidence            34555655555555554433      136789999999999999999999999999988665

>PLN02920 pantothenate kinase 1

Probab=95.93  E-value=0.46  Score=41.58  Aligned_cols=137  Identities=14%  Similarity=0.051  Sum_probs=92.9

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCC---CCCCCCCCcEEEEc--CCC-
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLY---APYWQPDARGIICG--ITE-   95 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r---~P~~~~~~~g~~~G--l~~-   95 (204)
                      |+.|--.|++.-||+++-=|...+-...+|+++-++|+.-. ..-. +.+-+..|..   .+.-..++.++-+|  ... 
T Consensus       184 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvD-llVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~  262 (398)
T PLN02920        184 DGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVID-MLVGDIYGGMDYSKIGLSSTTIASSFGKAISDN  262 (398)
T ss_pred             CCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccC-ceeccccCCCCCCCCCCCccceeeccCcccccc
Confidence            56777778888888877767666655678999999988643 1222 3456666521   23345667777777  321 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccH-HHHHHHHhhh------CCcEEeccCC
Q psy9355          96 ----DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANK-HLMQTQADLC------GIPVGKNLTG  162 (204)
Q Consensus        96 ----~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~-~~~Qi~Adv~------g~pv~~~~~~  162 (204)
                          +.+++|++|+++--|+..+-++--...+  -..+++|+.+|.-.+++ ..++.++-..      ++....++..
T Consensus       263 ~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~--~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHe  338 (398)
T PLN02920        263 KELEDYKPEDVARSLLRMISNNIGQISYLNAL--RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHE  338 (398)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCc
Confidence                3469999999999999999877544433  35689999999999876 7777665544      3444455553

>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.075  Score=45.82  Aligned_cols=58  Identities=21%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEe
Q psy9355          97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGK  158 (204)
Q Consensus        97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~  158 (204)
                      -+++|+.+...|-.+-.+-   +.+. ......++++++|||.+|+++|+.+|..+ |.+|..
T Consensus       263 l~a~Dv~aTL~eltA~tIv---~s~~-~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~  321 (371)
T COG2377         263 LNAEDVQATLVELTAATIV---KSVA-TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVAT  321 (371)
T ss_pred             CCHHHHHHHHHHHHHHHHH---HHHh-hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeee
Confidence            3788999998886655444   4443 23456899999999999999999999999 444443

>PRK09604 UGMP family protein; Validated

Probab=95.36  E-value=0.37  Score=41.33  Aligned_cols=120  Identities=23%  Similarity=0.225  Sum_probs=79.5

Q ss_pred             hhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC---------CCCCHHH
Q psy9355          32 VAVAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT---------EDTTRGH  101 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~---------~~~~~~~  101 (204)
                      -.+-|..++.+...+|.. ..-..++.+|..  +....+-+|... +.     ....=+|.|+.         ...++.+
T Consensus       158 d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~--g~~~~~~~~~~~-~~-----~~~~~sfsg~~~~~~~~~~~~~~~~~~  229 (332)
T PRK09604        158 DDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQ--GDPDAFKFPRPM-DR-----PGLDFSFSGLKTAVLNTIEKSEQTKAD  229 (332)
T ss_pred             CchhhHHHHHHHHHcCCCCCCcHHHHHHHHh--CCCCeEeCCccc-cC-----CCccEecCcHHHHHHHHHHhcCCCHHH
Confidence            346789999999988863 111246676643  221112223221 11     11112234442         2235789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355         102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus       102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                      +++++.+.++-.+.+.++...+.+  ..++|.++||.+.|..+++.+.+.+   |.++.+++.
T Consensus       230 iA~s~q~~l~~~l~~~~~~~~~~~--~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~  290 (332)
T PRK09604        230 IAASFQAAVVDVLVIKTKRALKQT--GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPL  290 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence            999999999888888877776543  4678999999999999999999998   888888776

>PRK14878 UGMP family protein; Provisional

Probab=95.19  E-value=0.084  Score=45.10  Aligned_cols=120  Identities=17%  Similarity=0.156  Sum_probs=78.1

Q ss_pred             hhchhHHHHHHHHhcCCCC-CHHHHHHHHHhcCCCCCeEEecCC-CCCCCCCCCCCCcEEE----EcCCCCCCHHHHHHH
Q psy9355          32 VAVAGAAMNWLRDNVGMVT-GVEEIESLAESHRHTGDVYFVPAF-SGLYAPYWQPDARGII----CGITEDTTRGHIVRA  105 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~~-~~~~l~~~a~~~~~~~g~~~~P~l-~G~r~P~~~~~~~g~~----~Gl~~~~~~~~l~rA  105 (204)
                      -.+.|..++-+...+++.. .-..+|+++....  . .+-+|+- .+.     +-+.+|.+    .-+....++.+++++
T Consensus       149 d~s~Gr~fD~vA~~LGl~~~G~~~lE~~a~~~~--~-~~~~p~~~~~~-----~~~fsgl~~~v~~~i~~~~~~~diAa~  220 (323)
T PRK14878        149 DIAIGNALDTFAREVGLAPPGGPAIEKCAEKGE--K-YIELPYVVKGQ-----DLSFSGLLTAALRLYKGKERLEDVCYS  220 (323)
T ss_pred             CcchhHHHHHHHHHcCCCCCChhHHHHHHhhCC--C-cCcCCccCcCC-----CCcchHHHHHHHHHHHcCCCHHHHHHH
Confidence            3567999999998888631 1234777665421  1 1112321 111     11111111    011122456899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355         106 ALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus       106 vlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                      +.+.++-.+-+..+...+.+  ..++|.++||.+.|..+++.+.+.+   |.+|.+++.
T Consensus       221 fq~~l~~~l~~~~~~~~~~~--g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~  277 (323)
T PRK14878        221 LRETAFAMLVEVTERALAHT--GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPP  277 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence            99999888888877776544  4678999999999999999999988   888988775

>PRK11678 putative chaperone; Provisional

Probab=94.94  E-value=0.11  Score=46.45  Aligned_cols=74  Identities=9%  Similarity=0.090  Sum_probs=49.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC-CcEEeccCCCccccc
Q psy9355          94 TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG-IPVGKNLTGGKDGGK  168 (204)
Q Consensus        94 ~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~~~~~~a~g~g  168 (204)
                      ...-++.++- .+++.+.-++...++..-+..+..++.|+++||.++.|...+++.+.++ .|+.....-.+++.|
T Consensus       366 ~~~ItR~efe-~ii~~~l~ri~~~i~~~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~G  440 (450)
T PRK11678        366 ATEISQQGLE-EAISQPLARILELVQLALDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAG  440 (450)
T ss_pred             ceeeCHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHH
Confidence            3344566543 3344444444444444333356778899999999999999999999996 577776555555444

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=94.93  E-value=0.081  Score=45.26  Aligned_cols=61  Identities=16%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDC-GIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~-g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      .++++.+++-++-++++.++.+.... +.++++|+++||+++.+-+...+++.||.||.+..
T Consensus       253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~  314 (348)
T TIGR01175       253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN  314 (348)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence            35678888889888888887764322 34688999999999999999999999999998864

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=94.83  E-value=0.096  Score=46.33  Aligned_cols=62  Identities=8%  Similarity=0.102  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh---cC---CCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355          99 RGHIVRAALEAICFQTRDILEAMKKD---CG---IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus        99 ~~~l~rAvlEgia~~~~~~~e~l~~~---~g---~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      -.+++++-+|.|.-.+++.++.+...   .+   .....|+++||+|+-+.+.++++++|++||.+..
T Consensus       293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~  360 (420)
T PRK09472        293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA  360 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeC
Confidence            44677777777877777777555332   23   2357799999999999999999999999998754

>CHL00094 dnaK heat shock protein 70

Probab=94.64  E-value=0.049  Score=50.61  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=29.1

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      .++.|+++||++|.|.+.+++++++|.++....
T Consensus       328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~  360 (621)
T CHL00094        328 DIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSV  360 (621)
T ss_pred             hCcEEEEECCccCChHHHHHHHHHhCCCcCcCC
Confidence            578999999999999999999999998875433

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=94.40  E-value=0.078  Score=50.02  Aligned_cols=121  Identities=16%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             hhchhHHHHHHHHhcCCC--CCHH-----HHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEc----CCCCCCHH
Q psy9355          32 VAVAGAAMNWLRDNVGMV--TGVE-----EIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICG----ITEDTTRG  100 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~--~~~~-----~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~G----l~~~~~~~  100 (204)
                      .++.|..++=+...+++.  .+|+     .+|.++..   +...++.|+-.  ...  +-+.++.+..    +....++.
T Consensus       560 tSS~GRlFDaVAalLGl~~~~syEGqAa~~LE~lA~~---s~~~v~~~~~i--~~~--~id~~~l~~~ii~~l~~g~~~~  632 (711)
T TIGR00143       560 TTSTGRLFDAVAAALGLCGERTYEGEAAIALEALALR---SDGIANYPFEI--KNK--VLDLKEFYQRFLEDLLVGEDRS  632 (711)
T ss_pred             cCCCCcHHHHHHHHcCCCcccccchhhHHHHHHHHhc---CCCccccCccc--cCC--ccCHHHHHHHHHHHHHcCCCHH
Confidence            456788888888888763  2344     24444432   11122344321  000  1122222211    12235688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC---CcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG---IPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g---~pv~~~~~  161 (204)
                      ++++++.+.++-.+...++.+.+.+  ..+.|+++||.++|..+++.+.+.++   .+|..++.
T Consensus       633 ~IAa~fh~tla~~L~~~a~~~~~~~--g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~  694 (711)
T TIGR00143       633 KIAHIAHKFVASGLVEIATAIAVPF--GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRH  694 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCC
Confidence            9999999999988888877775533  46789999999999999999998875   67777664

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family

Probab=94.39  E-value=0.15  Score=43.13  Aligned_cols=125  Identities=20%  Similarity=0.202  Sum_probs=76.3

Q ss_pred             hhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC----------CCCCHH
Q psy9355          32 VAVAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT----------EDTTRG  100 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~----------~~~~~~  100 (204)
                      -.+.|..++-+...+++. ..-..++.+|.......-.+.+|+...   ...+-+.+|.+..+.          ...++.
T Consensus       156 d~S~GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~~~~~~~~~---~~~~~s~sgl~~~~~~~~~~~~~~~~~~~~~  232 (305)
T TIGR00329       156 DDAVGEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFYFPLPYTVK---PMLDFSFSGLKTAALRKIEKLKKNLNEATKE  232 (305)
T ss_pred             CchhhHHHHHHHHHcCCCCCChHHHHHHHhhCCCccccCCCccccC---CCCcEEchHHHHHHHHHHHhcccccccccHH
Confidence            456889999999888862 222346666643211110112232211   000111111110000          013478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                      ++.+++.+.++-.+-+.++...+.+  .+++|.++||.+.|..+++.+.+.+   |.++.+++.
T Consensus       233 ~iAasfq~~l~~~l~~~~~~~~~~~--g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~  294 (305)
T TIGR00329       233 DIAYSFQETAFDHLIEKTKRALKDT--GPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPL  294 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence            8999999999888888877776543  4678999999999999999999887   667877765

This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.

>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=94.37  E-value=0.19  Score=43.36  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCC--CCCCCCCCcEEEEcCCC----
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLY--APYWQPDARGIICGITE----   95 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r--~P~~~~~~~g~~~Gl~~----   95 (204)
                      ++.|--.|++.-||+++-=|...+-...+++++.++|++-. ..-.+ .+-+..|..  .+.-.++..++-+|=-.    
T Consensus       175 ~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDl-lV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~  253 (341)
T PF03630_consen  175 PNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDL-LVGDIYGGDYNKIGLPGDLTASSFGKVQSKAK  253 (341)
T ss_dssp             TTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSE-EHHHHHSS-BGGGTB-TTSEEETTCCGGSHHH
T ss_pred             CCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCc-eeeeccCCCcccCCCCHHHHHhhhhhhhhccc
Confidence            56777777777888877666666533578999999998643 22223 345555554  22345566666555322    


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHH---hhh---CCcEEeccCC
Q psy9355          96 ---DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQA---DLC---GIPVGKNLTG  162 (204)
Q Consensus        96 ---~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~A---dv~---g~pv~~~~~~  162 (204)
                         ..+++|++|+++.-|++.+-++.-...+.  ..+++|+.+|.-.+ ++..++.++   +..   ++....++..
T Consensus       254 ~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~--~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~  328 (341)
T PF03630_consen  254 RKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKI--HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHE  328 (341)
T ss_dssp             H-CC--HHHHHHHHHHHHHHHHHHHHHHHHHH--HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTT
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCC
Confidence               23689999999999999998876555443  35789999999996 578888888   443   3444455554

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=94.34  E-value=0.16  Score=43.83  Aligned_cols=125  Identities=15%  Similarity=0.170  Sum_probs=84.5

Q ss_pred             ceEEecchh--hchhHHHHHHHHhcCCCC---CHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCC---
Q psy9355          24 VVYALEGSV--AVAGAAMNWLRDNVGMVT---GVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITE---   95 (204)
Q Consensus        24 ~~y~~~g~~--~~~G~~~~W~~~~~~~~~---~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~---   95 (204)
                      +.|-+.|.+  -+.|.+++-+.+.+++..   .=..+|++|++.  . ..+-+|.-.        .+..=+|.|+..   
T Consensus       144 ~~~~ilG~T~Dda~Gea~DKvar~LGL~~yp~gGp~iE~lA~~g--~-~~~~~P~~~--------~~~dfSFSGlkTav~  212 (345)
T PTZ00340        144 HRYRIFGETIDIAVGNCLDRFARLLNLSNDPAPGYNIEQLAKKG--K-NLIELPYVV--------KGMDMSFSGILTYIE  212 (345)
T ss_pred             CeEEEEEeecccchhHHHHHHHHHhCCCCCCCChHHHHHHHhhC--C-CccCCCCCC--------CCCcEECccHHHHHH
Confidence            556655543  458899999999998741   246788888642  2 222234321        112234544431   


Q ss_pred             --------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---
Q psy9355          96 --------------------DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---  152 (204)
Q Consensus        96 --------------------~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---  152 (204)
                                          ...+.++++++.|.++-.+.+.++..-+..  ..++|+++||.+.|..+++.+.+.+   
T Consensus       213 ~~i~~~~~~~~~~~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~--~~~~lvv~GGVAaN~~LR~~l~~~~~~~  290 (345)
T PTZ00340        213 DLVEHPQFKDVVSEIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHC--GSNEVLIVGGVGCNLRLQEMMQQMAKER  290 (345)
T ss_pred             HHHHhccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcCCHHHHHHHHHHHHHHHHHc
Confidence                                012568999999999888877766654433  5688999999999999999999886   


Q ss_pred             CCcEEeccC
Q psy9355         153 GIPVGKNLT  161 (204)
Q Consensus       153 g~pv~~~~~  161 (204)
                      +.++..|+.
T Consensus       291 ~~~~~~p~~  299 (345)
T PTZ00340        291 GGKLFAMDE  299 (345)
T ss_pred             CCEEEeCCh
Confidence            788888775

>PLN02902 pantothenate kinase

Probab=94.23  E-value=1.5  Score=42.13  Aligned_cols=128  Identities=15%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CCCeEEecCCCCC-C--CCCCCCCCcEEEEc--CC--
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH-TGDVYFVPAFSGL-Y--APYWQPDARGIICG--IT--   94 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~-~~g~~~~P~l~G~-r--~P~~~~~~~g~~~G--l~--   94 (204)
                      ++.|--.|++.-||+++-=|...+-...+|+++-++|+.-.. .-. +.+-+..|. .  .+.-..++.++-+|  ..  
T Consensus       233 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vD-llVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~  311 (876)
T PLN02902        233 DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAID-MLVGDIYGGMDYSKIGLSASTIASSFGKVISEN  311 (876)
T ss_pred             CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccC-eeeccccCCCCcCCCCCCcchhhhccCcccccc
Confidence            567877788888888877676666446789999999976431 122 345666662 1  12234566666666  21  


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHhhhC
Q psy9355          95 ---EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQADLCG  153 (204)
Q Consensus        95 ---~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Adv~g  153 (204)
                         .+.+++|++|+++--|++.+-++--...+  ...+++|+.+|.-.+ ++.-|+.++-.++
T Consensus       312 ~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~--~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~  372 (876)
T PLN02902        312 KELSDYRPEDISLSLLRMISYNIGQISYLNAL--RFGLKRIFFGGFFIRGHAYTMDTISFAVH  372 (876)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEEecceecCCcchHHHHHHHHH
Confidence               23569999999999999999887654443  356889999999986 5777787775554

>TIGR03722 arch_KAE1 universal archaeal protein Kae1

Probab=94.03  E-value=0.22  Score=42.44  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=75.5

Q ss_pred             hchhHHHHHHHHhcCCCC-CHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEE---c-CCCCCCHHHHHHHHH
Q psy9355          33 AVAGAAMNWLRDNVGMVT-GVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIIC---G-ITEDTTRGHIVRAAL  107 (204)
Q Consensus        33 ~~~G~~~~W~~~~~~~~~-~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~---G-l~~~~~~~~l~rAvl  107 (204)
                      .+.|..++.+...+++.. .-..+++++...  .. .+-+|+.. ...   +-+.++.+.   . +....++.++++++.
T Consensus       151 ~s~GrlfDava~~LGl~~~G~~~le~la~~~--~~-~~~~~~~~-~~~---~~~fs~l~~~~~~~~~~~~~~~diAasfq  223 (322)
T TIGR03722       151 IGLGNALDKFAREVGLGHPGGPKIEELAEKG--KE-YIELPYTV-KGM---DLSFSGLLTAALRAYKKGARLEDVCYSLQ  223 (322)
T ss_pred             ccchHHHHHHHHHhCCCCCChHHHHHHHhcC--CC-cccCCccC-CCC---cCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            567999999999888632 113566665432  11 11123211 000   001111110   0 011234789999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhh---hCCcEEeccC
Q psy9355         108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADL---CGIPVGKNLT  161 (204)
Q Consensus       108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv---~g~pv~~~~~  161 (204)
                      +.++-.+.+..+...+.+  ..++|.++||.+.|..+++.+.+.   .|.+|.+++.
T Consensus       224 ~~l~~~l~~~a~~~~~~~--g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~  278 (322)
T TIGR03722       224 ETAFAMLVEVTERALAHT--GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP  278 (322)
T ss_pred             HHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence            999888888887776644  467899999999999999999994   4778887765

This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.

>TIGR03723 bact_gcp putative glycoprotease GCP

Probab=93.95  E-value=0.2  Score=42.64  Aligned_cols=62  Identities=23%  Similarity=0.215  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355          98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus        98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                      ++.++++++.+.++-.+.+.++...+.+  ..++|.++||.+.|..+++.+.+.+   +.++.+++.
T Consensus       231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~  295 (314)
T TIGR03723       231 DKADIAASFQAAVVDVLVEKTKRALKKT--GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL  295 (314)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence            4678999999999988888877776543  4678999999999999999999998   888888776

This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas

>PRK13410 molecular chaperone DnaK; Provisional

Probab=93.71  E-value=0.077  Score=49.78  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=28.9

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      .++.|+++||++|.|.+.+++.+++|.++....
T Consensus       328 dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~  360 (668)
T PRK13410        328 DIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNV  360 (668)
T ss_pred             hCcEEEEECCccccHHHHHHHHHHcCCCcccCC
Confidence            578999999999999999999999998765433

>COG3426 Butyrate kinase [Energy production and conversion]

Probab=93.64  E-value=0.33  Score=40.69  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC--CcEEeccC
Q psy9355         102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG--IPVGKNLT  161 (204)
Q Consensus       102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g--~pv~~~~~  161 (204)
                      -++-++++++|+...-+-.+...+.-+++-|+++||.++++.++..+.+-+.  .||.+-+.
T Consensus       270 ~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PG  331 (358)
T COG3426         270 KAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPG  331 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCC
Confidence            4456778899999988888877777789999999999999999999999877  57766554

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=93.62  E-value=0.16  Score=43.34  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCcc-eEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCG-IQLI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI  170 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g-~~~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~  170 (204)
                      +++...++.+.-.+++.++....... -.++ .|+++||+|+-+.+.+++++.+++||.+....   .+.|++.+
T Consensus       246 eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~  320 (336)
T PRK13928        246 EALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKM  320 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence            44555555565555555554321011 1234 69999999999999999999999999887642   34555443

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=92.70  E-value=0.16  Score=47.20  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      .++.|+++||++|.|.+.+++.+.+|.++....
T Consensus       326 ~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~  358 (627)
T PRK00290        326 DIDEVILVGGSTRMPAVQELVKEFFGKEPNKGV  358 (627)
T ss_pred             hCcEEEEECCcCCChHHHHHHHHHhCCCCCcCc
Confidence            578999999999999999999999998876543

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=92.62  E-value=0.46  Score=40.68  Aligned_cols=33  Identities=12%  Similarity=0.090  Sum_probs=29.4

Q ss_pred             cc-eEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         129 LI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       129 ~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ++ .|+++||+|+-+.+.+++++.+++||.+..+
T Consensus       278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~  311 (335)
T PRK13929        278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAAN  311 (335)
T ss_pred             cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCC
Confidence            44 5999999999999999999999999988654

>TIGR01174 ftsA cell division protein FtsA

Probab=92.53  E-value=0.22  Score=43.22  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=29.6

Q ss_pred             cce-EEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         129 LIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       129 ~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      +.+ |+++||+|+.+.+.+++.+.|+.||.+...
T Consensus       314 i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P  347 (371)
T TIGR01174       314 LNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP  347 (371)
T ss_pred             CCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence            455 999999999999999999999999988654

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=92.47  E-value=0.29  Score=41.71  Aligned_cols=61  Identities=15%  Similarity=0.187  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-ceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQ-L-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~-~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      +++...++++.-.++..++......... . +.|+++||+|+-|.+.+.+++.+++||.+...
T Consensus       250 e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~  312 (333)
T TIGR00904       250 EALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADD  312 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCC
Confidence            4444555555555555444321111112 2 36999999999999999999999999988764

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=92.29  E-value=0.52  Score=42.94  Aligned_cols=117  Identities=16%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             hhchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCC--------CCCHHHH
Q psy9355          32 VAVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITE--------DTTRGHI  102 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~--------~~~~~~l  102 (204)
                      -.+.|..++-+...++.... --.++.+|...  .. ..-+|+-.      .+  ..=+|.|+-.        ..+..++
T Consensus       153 d~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~--~~-~~~~~~~~------~~--~~~~~~~l~~~~~~~~~~~~~~~~i  221 (535)
T PRK09605        153 DIGVGNALDKFARHVGLPHPGGPKIEKLAKDG--KK-YIDLPYVV------KG--MDFSFSGLLTAAKRAYDAGEPLEDV  221 (535)
T ss_pred             chhhhHHHHHHHHHhCCCCCCCHHHHHHHhcC--CC-cccCCCcC------CC--CCEeehHHHHHHHHHHHcCCCHHHH
Confidence            44678999999988876321 12456666432  11 11133210      00  0112333321        1246789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355         103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus       103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                      ++++.+.++-.+.+.++...+.+  ..++|.++||.+.|..+++.+.+.+   +.+|.+++.
T Consensus       222 A~~~q~~l~~~l~~~~~~~~~~~--g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~  281 (535)
T PRK09605        222 CYSLQETAFAMLTEVTERALAHT--GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEP  281 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence            99999999888888877776544  4678999999999999999999765   778888775

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=92.25  E-value=0.3  Score=41.53  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-eEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQ-LI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~-~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      +++...++++.-.+++.++......... .+ .|+++||+++-+.+.+.+.+.++.||.+...
T Consensus       247 e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~  309 (334)
T PRK13927        247 EALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAED  309 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCC
Confidence            4555555666555555554431100111 23 5999999999999999999999999988654

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=91.95  E-value=0.23  Score=46.21  Aligned_cols=31  Identities=13%  Similarity=0.154  Sum_probs=28.0

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGK  158 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~  158 (204)
                      .++.|+++||++|.|...+++++.+|.++..
T Consensus       328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~~  358 (616)
T PRK05183        328 EVKEVVMVGGSTRVPLVREAVGEFFGRTPLT  358 (616)
T ss_pred             cCCEEEEECCcccChHHHHHHHHHhccCcCc
Confidence            5789999999999999999999999987654

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=91.89  E-value=0.31  Score=45.72  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEec
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKN  159 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~  159 (204)
                      .++.|+++||.++.|...+++.+.+|.++...
T Consensus       367 ~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~  398 (663)
T PTZ00400        367 ELNDVILVGGMTRMPKVSETVKKIFGKEPSKG  398 (663)
T ss_pred             HCcEEEEECCccCChHHHHHHHHHhCCCcccC
Confidence            46899999999999999999999999887543

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=91.71  E-value=0.23  Score=45.89  Aligned_cols=33  Identities=18%  Similarity=0.235  Sum_probs=29.0

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      .++.|+++||.+|.|...+++.+.+|.++....
T Consensus       324 ~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~  356 (595)
T TIGR02350       324 DIDEVILVGGSTRIPAVQELVKDFFGKEPNKSV  356 (595)
T ss_pred             HCcEEEEECCcccChHHHHHHHHHhCCcccCCc
Confidence            578999999999999999999999998776543

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=91.49  E-value=0.4  Score=40.75  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC-Ccce-EEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGI-QLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~-~~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      +++...++.+.-.++..++........ ..++ |+++||+++-+.+.+.+++.++.|+.+...
T Consensus       251 e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~  313 (335)
T PRK13930        251 EALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAED  313 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCC
Confidence            344455555555555555433110001 1244 999999999999999999999999987654

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=91.00  E-value=0.39  Score=44.52  Aligned_cols=35  Identities=9%  Similarity=0.059  Sum_probs=30.5

Q ss_pred             CCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       127 ~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ..++.|+++||.+|.|...+++.+.+|+++....+
T Consensus       307 ~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~n  341 (595)
T PRK01433        307 PNIDGVILVGGATRIPLIKDELYKAFKVDILSDID  341 (595)
T ss_pred             ccCcEEEEECCcccChhHHHHHHHHhCCCceecCC
Confidence            35899999999999999999999999998765433

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=90.81  E-value=0.22  Score=42.68  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=27.9

Q ss_pred             ceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355         130 IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG  162 (204)
Q Consensus       130 ~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~  162 (204)
                      +.|+++||+|+-+-+-+.+++-+++||.+.+..
T Consensus       275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P  307 (326)
T PF06723_consen  275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDP  307 (326)
T ss_dssp             H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SST
T ss_pred             CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCH
Confidence            459999999999999999999999999998873

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=89.67  E-value=0.42  Score=44.84  Aligned_cols=54  Identities=13%  Similarity=0.216  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGI---QLIKLQVDGGMTANKHLMQTQADLCGIPVGK  158 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~---~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~  158 (204)
                      ++.+.+++-+.-.+++.++   + .+.   .++.|+++||.+|-|...+++.+.+|.+...
T Consensus       327 ~l~~~l~~r~~~~v~~~L~---~-a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~  383 (657)
T PTZ00186        327 GITQRLIERSIAPCKQCMK---D-AGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFR  383 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHH---H-cCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccc
Confidence            4445555544443333333   2 343   5789999999999999999999999986544

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=89.42  E-value=0.61  Score=42.84  Aligned_cols=59  Identities=15%  Similarity=0.166  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ++.-+++.+.-.+..+++.... ...+++.|.++||+++.|.+.+++.+.++.++.....
T Consensus       303 l~~~~~~~~~~~i~~~l~~~~~-~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~  361 (602)
T PF00012_consen  303 LCEPLLERIIEPIEKALKDAGL-KKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVN  361 (602)
T ss_dssp             HTHHHHHHTHHHHHHHHHHTT---GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-
T ss_pred             cccccccccccccccccccccc-cccccceeEEecCcccchhhhhhhhhccccccccccc
Confidence            3344444444444443332211 1235789999999999999999999999987765443

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=89.03  E-value=0.94  Score=42.03  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=28.4

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEec
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKN  159 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~  159 (204)
                      .++.|+++||+++.|...+++.+.++.++...
T Consensus       312 ~id~ViLvGGssriP~V~~~l~~~f~~~~~~~  343 (599)
T TIGR01991       312 EIKGVVLVGGSTRMPLVRRAVAELFGQEPLTD  343 (599)
T ss_pred             hCCEEEEECCcCCChHHHHHHHHHhCCCCCCC
Confidence            57899999999999999999999999876543

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=87.83  E-value=2.5  Score=36.23  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDCG-IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~g-~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      .+.++-+++-+.-++++.++-+-...+ ..+++|+++||+++-.-+-+.+.+-++.|+.+...
T Consensus       258 ~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP  320 (354)
T COG4972         258 SEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP  320 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence            467899999999999999998765333 46899999999999999999999999999988654

>PTZ00297 pantothenate kinase; Provisional

Probab=87.60  E-value=22  Score=36.77  Aligned_cols=141  Identities=17%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             ceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHH---HHhcC-CCCCeEEecCCCCC---C-CCCCCCCCcEEEEcC--
Q psy9355          24 VVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESL---AESHR-HTGDVYFVPAFSGL---Y-APYWQPDARGIICGI--   93 (204)
Q Consensus        24 ~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~---a~~~~-~~~g~~~~P~l~G~---r-~P~~~~~~~g~~~Gl--   93 (204)
                      +.|--.|++.-||+++-=|...+-...+|+++-++   |+.-. ..-.+ .+=++.|.   . .|....++.++-+|=  
T Consensus      1235 ~~~~RvgGt~iGGGT~~GL~~llt~~~~f~e~l~~~~la~~Gd~~~vDl-lVgDIyg~~~~~~~~~L~~~~iASsfGk~~ 1313 (1452)
T PTZ00297       1235 GSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDL-LVGDIYGYNAKDLPAMLSVDTVASTFGKLG 1313 (1452)
T ss_pred             CcEEEecCcccccHhHHHHHHHhcCCCCHHHHHHHHHHhhCCCccccce-EEeeccCCCcccccCCCCcceeeeccCccc
Confidence            56777777888888776666665445789988774   44322 11112 23333441   1 111233444444440  


Q ss_pred             ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9355          94 ---------------------------------------------TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQ  128 (204)
Q Consensus        94 ---------------------------------------------~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~  128 (204)
                                                                   ....+++|++|+++-.|.+.+-++--...+  ...
T Consensus      1314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~--~~~ 1391 (1452)
T PTZ00297       1314 TERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSR--VQG 1391 (1452)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcC
Confidence                                                         001358999999999999999887543333  457


Q ss_pred             cceEEEecCcc-ccHHHHHHHHhhhC------CcEEeccCC---Ccccc
Q psy9355         129 LIKLQVDGGMT-ANKHLMQTQADLCG------IPVGKNLTG---GKDGG  167 (204)
Q Consensus       129 ~~~I~~~GGga-~s~~~~Qi~Adv~g------~pv~~~~~~---~a~g~  167 (204)
                      +++|+.+|+-. .++..++.++..++      +....+++.   +|+|+
T Consensus      1392 ~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga 1440 (1452)
T PTZ00297       1392 VPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGC 1440 (1452)
T ss_pred             CCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhh
Confidence            89999999954 68999999998874      444555553   44554

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=86.71  E-value=0.87  Score=38.86  Aligned_cols=68  Identities=18%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-cce-EEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355         103 VRAALEAICFQTRDILEAMKKDCGIQ-LIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI  170 (204)
Q Consensus       103 ~rAvlEgia~~~~~~~e~l~~~~g~~-~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~  170 (204)
                      ++-.+++|.-.+|..+|..--++..+ .++ ++++||||.-+-+-+.+++-++.||.+.+..   .+.|+|..
T Consensus       256 l~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~  328 (342)
T COG1077         256 LEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKA  328 (342)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchh
Confidence            34455555556666555421111112 244 9999999988888999999999999998873   45677653

>PLN03184 chloroplast Hsp70; Provisional

Probab=86.39  E-value=0.96  Score=42.59  Aligned_cols=32  Identities=16%  Similarity=0.147  Sum_probs=28.5

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCCcEEec
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKN  159 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~  159 (204)
                      +++.|+++||.+|.|...+++.+.+|.++...
T Consensus       365 dId~ViLvGGssriP~V~~~i~~~fg~~~~~~  396 (673)
T PLN03184        365 DIDEVILVGGSTRIPAVQELVKKLTGKDPNVT  396 (673)
T ss_pred             HccEEEEECCccccHHHHHHHHHHhCCCcccc
Confidence            46899999999999999999999999877543

>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []

Probab=86.31  E-value=1.8  Score=37.56  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             CCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCcce-EEEecCccccHHHHHHHHhhhCCc-EEeccC
Q psy9355          97 TTRGHIV---RAALEAICFQTRDILEAMKKDCGIQLIK-LQVDGGMTANKHLMQTQADLCGIP-VGKNLT  161 (204)
Q Consensus        97 ~~~~~l~---rAvlEgia~~~~~~~e~l~~~~g~~~~~-I~~~GGga~s~~~~Qi~Adv~g~p-v~~~~~  161 (204)
                      ....+++   +..+|-+...+   ++.+.+.+|  .++ |.++||.+.|-.+++.+++-.+.. |.+++.
T Consensus       133 ~~~~dlAa~~Q~~~E~~v~~~---~~~~~~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa  197 (360)
T PF02543_consen  133 QRHADLAASAQKVLEEIVLHL---VRHLLERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPA  197 (360)
T ss_dssp             SS-HHHHHHHHHHHHHHHHHH---HHHHHHHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TT
T ss_pred             chHHHHHHHHHHHHHHHHHHH---HHHHHHHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCC
Confidence            3556666   55666665544   333334355  556 999999999999999999997754 888775

The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.

>KOG2201|consensus

Probab=85.97  E-value=4.5  Score=34.70  Aligned_cols=129  Identities=15%  Similarity=0.093  Sum_probs=80.4

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCC--CCCCCcEEEEc------CC
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPY--WQPDARGIICG------IT   94 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~--~~~~~~g~~~G------l~   94 (204)
                      |+.|=-.|+++-||+++==|-..+-...++||+-++|.+-...+-=+++-...|-....  -.+++.++-+|      =.
T Consensus       193 ~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg~y~~fGL~~~~iASSFGk~~~~eK~  272 (371)
T KOG2201|consen  193 PDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGGDYSRFGLKGDLIASSFGKVIRKEKE  272 (371)
T ss_pred             CCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCccHhhcCCChhHHHHHHHHHhhcccc
Confidence            77787777777777765444444433578999999887643111112334444432110  01112222121      12


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHhhhC
Q psy9355          95 EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQADLCG  153 (204)
Q Consensus        95 ~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Adv~g  153 (204)
                      .+.+++|++||.+--|.+.+-++.-.. . ....++||+..|--.| ++.-|..+|=.++
T Consensus       273 ~~~s~eDia~SlL~mIsnNIGqiAyl~-A-~~~ni~rV~FgG~fiR~~~itM~tLsyAi~  330 (371)
T KOG2201|consen  273 LSVSKEDIARSLLRMISNNIGQIAYLC-A-LNENIKRVYFGGFFIRGHPITMKTLSYAIN  330 (371)
T ss_pred             cccChHHHHHHHHHHHHhhHHHHHHHH-H-HHhCccEEEEeeeEEecCceehHHHHHHHH
Confidence            347899999999999999998876544 3 3567899999998887 5777888776554

>PRK13411 molecular chaperone DnaK; Provisional

Probab=85.80  E-value=1.6  Score=40.97  Aligned_cols=30  Identities=13%  Similarity=0.202  Sum_probs=26.5

Q ss_pred             cceEEEecCccccHHHHHHHHhhhC-CcEEe
Q psy9355         129 LIKLQVDGGMTANKHLMQTQADLCG-IPVGK  158 (204)
Q Consensus       129 ~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~  158 (204)
                      ++.|+++||.+|.|...+++.+.++ .++..
T Consensus       328 id~ViLvGGssriP~v~~~l~~~f~~~~~~~  358 (653)
T PRK13411        328 IDRVILVGGSTRIPAVQEAIQKFFGGKQPDR  358 (653)
T ss_pred             CcEEEEECCCCCcchHHHHHHHHcCCcCcCC
Confidence            6899999999999999999999997 55544

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=85.50  E-value=1.3  Score=41.51  Aligned_cols=30  Identities=13%  Similarity=0.096  Sum_probs=26.4

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhC-CcEE
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCG-IPVG  157 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~  157 (204)
                      .++.|.++||.+|.|...+++.+.++ .++.
T Consensus       332 ~i~~ViLvGGssriP~v~~~i~~~f~~~~~~  362 (653)
T PTZ00009        332 SVHEVVLVGGSTRIPKVQSLIKDFFNGKEPC  362 (653)
T ss_pred             HCcEEEEECCCCCChhHHHHHHHHhCCCCCC
Confidence            47899999999999999999999996 4553

>PRK00180 acetate kinase A/propionate kinase 2; Reviewed

Probab=85.30  E-value=4.5  Score=35.75  Aligned_cols=50  Identities=8%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhhC
Q psy9355         104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCG  153 (204)
Q Consensus       104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~g  153 (204)
                      +-++|..+|+++..+-.+-..+.-.++-|+.+||.. +|+.+++.+.+-+.
T Consensus       299 ~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~  349 (402)
T PRK00180        299 KLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLE  349 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence            348899999999999888776634799999999999 88888888776544

>TIGR00016 ackA acetate kinase

Probab=84.45  E-value=5.3  Score=35.31  Aligned_cols=50  Identities=8%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhhC
Q psy9355         104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCG  153 (204)
Q Consensus       104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~g  153 (204)
                      +-++|..+|+++..+-.+...++-.++-|+.+||.. +++.+++.+.+-++
T Consensus       303 ~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~  353 (404)
T TIGR00016       303 QLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALE  353 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence            348899999999999888776665689999999999 78887777766544

Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=83.82  E-value=4  Score=38.37  Aligned_cols=57  Identities=16%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCC
Q psy9355          96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI  154 (204)
Q Consensus        96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~  154 (204)
                      ..++.+++.+...++|-.+.+++..+.+.  ..+++|.++||...|+++++-+++.+..
T Consensus       663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~--~gi~~V~lsGGVf~N~~l~~~~~~~l~~  719 (750)
T COG0068         663 KDEPEKIATKFHNALAEGFAELAVELAKK--YGINKVVLSGGVFQNRLLLERLAKYLKK  719 (750)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCccEEEeeCCeeecHHHHHHHHHHHHh
Confidence            46788899999999999888888888763  4578999999999999999999999985

>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.31  E-value=6  Score=32.82  Aligned_cols=114  Identities=22%  Similarity=0.214  Sum_probs=63.5

Q ss_pred             hchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCH----HHHHHHHH
Q psy9355          33 AVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTR----GHIVRAAL  107 (204)
Q Consensus        33 ~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~----~~l~rAvl  107 (204)
                      ...|..++-..+.+++... -..+++++...   +. +-+|.        ...+..=+|.|+....-+    .++++++.
T Consensus       135 ~~~ge~~dk~~~~l~l~~~~g~~le~la~~~---~~-~~~p~--------~~~~~~~sFsG~~t~~~~~i~~~~iA~s~q  202 (268)
T PF00814_consen  135 DAIGEAFDKVARLLGLPYPGGPALEKLASEG---EA-FKFPR--------PLKNCDFSFSGLKTAVYRLIEKADIAASFQ  202 (268)
T ss_dssp             SCHHHHHHHHHHHTT--SSHHHHHHHHHCT----S---------------SEETTEEEEHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHhhHHHHhccccccCcHHHHHHHhC---Cc-ceecc--------ceeeeeEEEEcccHHHHHHhhhhHHHHHHH
Confidence            4577888888877765322 23566666532   11 11221        111244556666532211    45677777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh--CCcEEecc
Q psy9355         108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC--GIPVGKNL  160 (204)
Q Consensus       108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~--g~pv~~~~  160 (204)
                      +.++-.+.......-+.  ...+.|.++||.+.|+.+++.+.+..  +.++..|+
T Consensus       203 ~~~~~~l~~~~~~a~~~--~~~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~  255 (268)
T PF00814_consen  203 EAIADHLAKKAPRALEK--PRAKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP  255 (268)
T ss_dssp             HHHHHHHHHHHHHHHHH--HTCSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred             HHHHHHHHHHHHHHHHh--hcccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence            77666555555443222  35789999999999999998876543  67777766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....

>PRK07058 acetate kinase; Provisional

Probab=81.18  E-value=6.4  Score=34.66  Aligned_cols=50  Identities=12%  Similarity=0.198  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhhC
Q psy9355         103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCG  153 (204)
Q Consensus       103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~g  153 (204)
                      ++-++|..+|+++..+-.+...+| .++-|+.+||.. +|+.+++.+.+-++
T Consensus       294 A~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l~  344 (396)
T PRK07058        294 AREALDLFALRIAGEIARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERLA  344 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence            556899999999999999887775 789999999999 78877777666544

>PRK12379 propionate/acetate kinase; Provisional

Probab=80.16  E-value=8.7  Score=33.86  Aligned_cols=47  Identities=11%  Similarity=0.164  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcccc-HHHHHHHHhh
Q psy9355         104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN-KHLMQTQADL  151 (204)
Q Consensus       104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s-~~~~Qi~Adv  151 (204)
                      +-++|..+|+++..+-.+-..++ .++-|+.+||...| ...++.+.+-
T Consensus       294 ~lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~  341 (396)
T PRK12379        294 QLAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEH  341 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhh
Confidence            34889999999999988877777 89999999999954 5555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
2d4w_A	504	Crystal Structure Of Glycerol Kinase From Cellulomo		8e-48
2d4w_A	504	Crystal Structure Of Glycerol Kinase From Cellulomo		1e-06
2dpn_A	495	Crystal Structure Of The Glycerol Kinase From Therm		2e-41
2dpn_A	495	Crystal Structure Of The Glycerol Kinase From Therm		8e-05
1bu6_O	501	Crystal Structures Of Escherichia Coli Glycerol Kin		8e-37
1bu6_O	501	Crystal Structures Of Escherichia Coli Glycerol Kin		7e-04
1gla_G	501	Structure Of The Regulatory Complex Of Escherichia		9e-37
1gla_G	501	Structure Of The Regulatory Complex Of Escherichia		7e-04
1bwf_Y	501	Escherichia Coli Glycerol Kinase Mutant With Bound		9e-37
1bwf_Y	501	Escherichia Coli Glycerol Kinase Mutant With Bound		8e-04
3ezw_A	526	Crystal Structure Of A Hyperactive Escherichia Coli		9e-37
3ezw_A	526	Crystal Structure Of A Hyperactive Escherichia Coli		6e-04
3g25_A	501	1.9 Angstrom Crystal Structure Of Glycerol Kinase (		6e-35
3d7e_O	505	Enterococcus Casseliflavus Glycerol Kinase Mutant H		2e-34
3d7e_O	505	Enterococcus Casseliflavus Glycerol Kinase Mutant H		3e-04
3h3n_X	506	Glycerol Kinase H232r With Glycerol Length = 506		2e-34
3h3n_X	506	Glycerol Kinase H232r With Glycerol Length = 506		3e-04
3h45_X	506	Glycerol Kinase H232e With Ethylene Glycol Length =		2e-34
3h45_X	506	Glycerol Kinase H232e With Ethylene Glycol Length =		3e-04
3flc_O	518	Crystal Structure Of The His-Tagged H232r Mutant Of		2e-34
3flc_O	518	Crystal Structure Of The His-Tagged H232r Mutant Of		3e-04
1r59_O	505	Enterococcus Casseliflavus Glycerol Kinase Length =		2e-34
1r59_O	505	Enterococcus Casseliflavus Glycerol Kinase Length =		3e-04
1xup_O	487	Enterococcus Casseliflavus Glycerol Kinase Complexe		2e-34
1xup_O	487	Enterococcus Casseliflavus Glycerol Kinase Complexe		3e-04
4e1j_A	520	Crystal Structure Of Glycerol Kinase In Complex Wit		7e-34
2zf5_O	497	Crystal Structure Of Highly Thermostable Glycerol K		1e-33
2zf5_O	497	Crystal Structure Of Highly Thermostable Glycerol K		1e-04
2w41_A	507	Crystal Structure Of Plasmodium Falciparum Glycerol		8e-31
2w41_A	507	Crystal Structure Of Plasmodium Falciparum Glycerol		7e-05
2w40_A	503	Crystal Structure Of Plasmodium Falciparum Glycerol		8e-31
2w40_A	503	Crystal Structure Of Plasmodium Falciparum Glycerol		7e-05
2itm_A	484	Crystal Structure Of The E. Coli Xylulose Kinase Co		7e-07
3gbt_A	504	Crystal Structure Of Gluconate Kinase From Lactobac		1e-06
3ifr_A	508	The Crystal Structure Of Xylulose Kinase From Rhodo		3e-06
3gg4_A	554	The Crystal Structure Of Glycerol Kinase From Yersi		2e-04

>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 87/153 (56%), Positives = 111/153 (72%)
Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           KV S+ GLLTTV +K+GD P VYALEGS+AV G+ + WLRDN+GM     ++E LA   +
Sbjct: 279 KVMSKNGLLTTVCYKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQ 338
Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
             G  YFVPAFSGL+APYW+PDARG + G+T    R HI RAALEA  FQ+R++++AM  
Sbjct: 339 DNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNA 398
Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D G+ L +L+VDGGM AN+ LMQ QAD  G+ V
Sbjct: 399 DSGVDLTELRVDGGMVANELLMQFQADQLGVDV 431

>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 28/31 (90%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEW 189
           N+TGG +GG ++TDV+NASRTMLM+++TL W
Sbjct: 170 NMTGGTEGGVHVTDVTNASRTMLMDLDTLSW 200

>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S +GLL TVA+ LG     YALEGS+ VAGAA+ WL++ VG++    E+E+LA S   
Sbjct: 277 VLSEKGLLATVAWSLGGR-ATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVED 334
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           TGDVYFVPAF+GL APYW P ARG + G+T  T+R H+ RAALE + FQ RD++ AM+++
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEE 394
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            G++L  L+ DGGM  N+  ++ QADL G+PV
Sbjct: 395 AGVRLKVLKADGGMAQNRLFLKIQADLLGVPV 426

>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLC 194
           NLTGGK    + TD +NASRT+L N+ TL WDP L 
Sbjct: 170 NLTGGK---VHATDPTNASRTLLFNLHTLAWDPELL 202

>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A     E V YALEG+V +AGA++ WLRD + ++    + E  A   ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           T  VY VPAF+GL APYW P ARG I G+T      HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
            GI+L  L+VDGG  AN  LMQ Q+D+ G  V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432

>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G  ++TD +NASRTML NI TL+WD  +  V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209

>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A     E V YALEG+V +AGA++ WLRD + ++    + E  A   ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           T  VY VPAF+GL APYW P ARG I G+T      HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
            GI+L  L+VDGG  AN  LMQ Q+D+ G  V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432

>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G  ++TD +NASRTML NI TL+WD  +  V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209

>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A     E V YALEG+V +AGA++ WLRD + ++    + E  A   ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           T  VY VPAF+GL APYW P ARG I G+T      HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
            GI+L  L+VDGG  AN  LMQ Q+D+ G  V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432

>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G  ++TD +NASRTML NI TL+WD  +  V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209

>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A     E V YALEG+V +AGA++ WLRD + ++    + E  A   ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           T  VY VPAF+GL APYW P ARG I G+T      HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
            GI+L  L+VDGG  AN  LMQ Q+D+ G  V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432

>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G  ++TD +NASRTML NI TL+WD  +  V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209

>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A+ + D  V YALEGS+ V+G+A+ WLRD +  +    + ES A     
Sbjct: 282 VKSESGLLTTIAYGI-DGKVNYALEGSIFVSGSAIQWLRDGLRXINSAPQSESYATRVDS 340
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           T  VY VPAF GL  PYW  +ARG I G+T  T + H +RA LE++C+QTRD+ EA  KD
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVXEAXSKD 400
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
            GI +  L+VDGG   N  + Q QAD+    V +
Sbjct: 401 SGIDVQSLRVDGGAVKNNFIXQFQADIVNTSVER 434

>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S   LLTT+ + +  + V YALEGS+ VAG+A+ WLRD + M+    + E LA   +   
Sbjct: 282 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 340
Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
           +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKKD G
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 400
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
           I +  L+VDGG   N  LMQ QAD+  I V +  NL     G  Y+
Sbjct: 401 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 446

>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
           DG  ++TD SNASRTML NI  LEWD
Sbjct: 175 DGQVHVTDYSNASRTMLYNIHKLEWD 200

>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S   LLTT+ + +  + V YALEGS+ VAG+A+ WLRD + M+    + E LA   +   
Sbjct: 283 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 341
Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
           +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKKD G
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 401
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
           I +  L+VDGG   N  LMQ QAD+  I V +  NL     G  Y+
Sbjct: 402 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 447

>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
           DG  ++TD SNASRTML NI  LEWD
Sbjct: 176 DGQVHVTDYSNASRTMLYNIHKLEWD 201

>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S   LLTT+ + +  + V YALEGS+ VAG+A+ WLRD + M+    + E LA   +   
Sbjct: 283 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 341
Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
           +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKKD G
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 401
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
           I +  L+VDGG   N  LMQ QAD+  I V +  NL     G  Y+
Sbjct: 402 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 447

>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
           DG  ++TD SNASRTML NI  LEWD
Sbjct: 176 DGQVHVTDYSNASRTMLYNIHKLEWD 201

>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S   LLTT+ + +  + V YALEGS+ VAG+A+ WLRD + M+    + E LA   +   
Sbjct: 295 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 353
Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
           +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKKD G
Sbjct: 354 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 413
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
           I +  L+VDGG   N  LMQ QAD+  I V +  NL     G  Y+
Sbjct: 414 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 459

>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
           DG  ++TD SNASRTML NI  LEWD
Sbjct: 188 DGQVHVTDYSNASRTMLYNIHKLEWD 213

>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S   LLTT+ + +  + V YALEGS+ VAG+A+ WLRD + M+    + E LA   +   
Sbjct: 282 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 340
Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
           +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKKD G
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 400
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
           I +  L+VDGG   N  LMQ QAD+  I V +  NL     G  Y+
Sbjct: 401 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 446

>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
           DG  ++TD SNASRTML NI  LEWD
Sbjct: 175 DGQVHVTDYSNASRTMLYNIHKLEWD 200

>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7   SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
           S   LLTT+ + +  + V YALEGS+ VAG+A+ WLRD + M+    + E LA   +   
Sbjct: 278 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 336
Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
           +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKKD G
Sbjct: 337 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 396
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
           I +  L+VDGG   N  LMQ QAD+  I V +  NL     G  Y+
Sbjct: 397 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 442

>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
           DG  ++TD SNASRTML NI  LEWD
Sbjct: 171 DGQVHVTDYSNASRTMLYNIHKLEWD 196

>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 100/157 (63%), Gaps = 5/157 (3%)
Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S+  LLTT+A++L D    YALEGS+ VAGAA+ WLRD + ++    +  SLAES   
Sbjct: 301 VRSKNRLLTTIAYRL-DGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADP 359
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           + +VY VPAF+GL AP+W PDARG I G T +T      RAALEA+C+QTRD+LEA  KD
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGXTRNTGPAEFARAALEAVCYQTRDLLEAXHKD 419
Query: 125 C---GIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
               G   + L+VDGG  A+    Q  +DL   PV +
Sbjct: 420 WRRNGNDTV-LRVDGGXVASDWTXQRLSDLLDAPVDR 455

>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 94/146 (64%), Gaps = 3/146 (2%)
Query: 11  LLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYF 70
           LLTT+A+ L    V YALEGS+ V GAA+ WLRD + ++    E E LA        VYF
Sbjct: 279 LLTTIAWGLNGR-VSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYF 337
Query: 71  VPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLI 130
           VPAF GL APYW   ARGII GIT  T R H+ RA LEAI + TRD+++ M+K   +Q+ 
Sbjct: 338 VPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEK--LVQIK 395
Query: 131 KLQVDGGMTANKHLMQTQADLCGIPV 156
           +L+VDGG TAN  LMQ QAD+    V
Sbjct: 396 ELRVDGGATANDFLMQFQADILNRKV 421

>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G+++TD SNASRTML NI+ L+WD  L  +++I
Sbjct: 172 GEHVTDYSNASRTMLFNIKKLDWDDELLELFDI 204

>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Adp Length = 507

Iteration: 1
 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 109/190 (57%), Gaps = 12/190 (6%)
Query: 5   VDSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GL+TT+ +K  D +   YALEGS+  AG+ ++WL  N  ++    E   + E   
Sbjct: 287 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCE 345
Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
           +T  V FVPAFSGLYAP W+ DAR  I G+T +T R HIVRA LE I FQ  +I++++  
Sbjct: 346 NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 405
Query: 124 DCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLM 182
           D GI+++  L+ DGGMT NK  MQ  +D+    +        +  KY  +V++    +L 
Sbjct: 406 DMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKI--------EVSKY-KEVTSLGAAVLA 456
Query: 183 NIETLEWDPM 192
            +E   WD +
Sbjct: 457 GLEVKIWDSL 466

>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Adp Length = 507

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G   TDV+NASRT+LM+I TL+WD  +C ++ I
Sbjct: 182 GNCYTDVTNASRTLLMDINTLQWDEKMCKIFNI 214

>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Bound Glycerol Length = 503

Iteration: 1
 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 109/190 (57%), Gaps = 12/190 (6%)
Query: 5   VDSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GL+TT+ +K  D +   YALEGS+  AG+ ++WL  N  ++    E   + E   
Sbjct: 283 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCE 341
Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
           +T  V FVPAFSGLYAP W+ DAR  I G+T +T R HIVRA LE I FQ  +I++++  
Sbjct: 342 NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 401
Query: 124 DCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLM 182
           D GI+++  L+ DGGMT NK  MQ  +D+    +        +  KY  +V++    +L 
Sbjct: 402 DMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKI--------EVSKY-KEVTSLGAAVLA 452
Query: 183 NIETLEWDPM 192
            +E   WD +
Sbjct: 453 GLEVKIWDSL 462

>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Bound Glycerol Length = 503

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           G   TDV+NASRT+LM+I TL+WD  +C ++ I
Sbjct: 178 GNCYTDVTNASRTLLMDINTLQWDEKMCKIFNI 210

>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 23  PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYW 82
           P  + L   +  A + ++W     G+      I +  ++      V+F+P  SG   P+ 
Sbjct: 282 PQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHN 341
Query: 83  QPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANK 142
            P A+G+  G+T       + RA LE + +   D ++ +   CGI+   + + GG   ++
Sbjct: 342 NPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSE 400
Query: 143 HLMQTQADLCG 153
           +  Q  AD+ G
Sbjct: 401 YWRQMLADISG 411

>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus Acidophilus Length = 504

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 26  YALEGSVAVAGAAMNWLRDNV--GMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQ 83
           Y L G V   G   NW R  +     T  + ++    +   + ++ F+P   G  AP W 
Sbjct: 290 YLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWD 349
Query: 84  PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKH 143
            +ARG   G+T    +    RA +E I F   D    + K+   + + +   GG   +  
Sbjct: 350 ANARGSFVGLTRXHQKPEXARAVIEGIIFNLYDAASNLIKNTK-KPVAINATGGFLKSDF 408
Query: 144 LMQTQADLCGIPV 156
           + Q  A++  +P+
Sbjct: 409 VRQLCANIFNVPI 421

>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From Rhodospirillum Rubrum Length = 508

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 23  PVVYALEGSVAVAGAAMNWLRDNVGMVTGVE---EIESLAESHRHTGD-VYFVPAFSGLY 78
           P +YA  G  A  G+A+NWL   +    G     ++++LA       D +  +P F G  
Sbjct: 292 PGLYAPNGCXAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEK 351
Query: 79  APYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM 138
            P   P A G   G++   TRGH+ RA LEA+    R  + A+  D G    +     G 
Sbjct: 352 TPIHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHV-AVLDDIGHAPQRFFASDGG 410
Query: 139 TANKHLMQTQADLCGIPV 156
           T ++      AD+   PV
Sbjct: 411 TRSRVWXGIXADVLQRPV 428

>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia Pseudotuberculosis Length = 554

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTT-RGHIVR--AALEAICFQTRDILEAM 121
           T D++ +P F G  +P   P+  GII G+   TT     +R  A ++A+   TR I+E  
Sbjct: 377 TNDIHXLPYFHGNRSPRANPNLTGIITGLKLSTTPEDXALRYLATIQALALGTRHIIETX 436
Query: 122 KKDCGIQLIKLQVDGGMTANKHLMQTQADLCG 153
            ++ G  +      GG T N   +Q  A+  G
Sbjct: 437 NQN-GYNIDTXXASGGGTKNPIFVQEHANATG 467

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	4e-88
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	1e-16
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	4e-86
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	4e-14
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	8e-84
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	1e-13
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	1e-83
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	2e-13
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	2e-83
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	2e-13
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	7e-82
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	1e-13
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	2e-81
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	2e-13
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	2e-78
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	7e-13
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	8e-42
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	5e-08
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	6e-39
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	2e-07
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	3e-27
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	4e-05
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	4e-26
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	1e-25
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	6e-05
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	7e-25
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	4e-05
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	1e-24
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	9e-21
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	2e-10

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score =  267 bits (684), Expect = 4e-88
 Identities = 86/152 (56%), Positives = 110/152 (72%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S+ GLLTTV +K+GD P VYALEGS+AV G+ + WLRDN+GM     ++E LA   + 
Sbjct: 280 VMSKNGLLTTVCYKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQD 339

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
            G  YFVPAFSGL+APYW+PDARG + G+T    R HI RAALEA  FQ+R++++AM  D
Sbjct: 340 NGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNAD 399

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            G+ L +L+VDGGM AN+ LMQ QAD  G+ V
Sbjct: 400 SGVDLTELRVDGGMVANELLMQFQADQLGVDV 431

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           N+TGG +GG ++TDV+NASRTMLM+++TL W   +     I
Sbjct: 170 NMTGGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGI 210

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score =  261 bits (670), Expect = 4e-86
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 3/154 (1%)

Query: 5   VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
           V S  GL+TT+ +K   ++   YALEGS+  AG+ ++WL  N  ++    E   + E   
Sbjct: 283 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCE 341

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
           +T  V FVPAFSGLYAP W+ DAR  I G+T +T R HIVRA LE I FQ  +I++++  
Sbjct: 342 NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 401

Query: 124 DCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPV 156
           D GI+++  L+ DGGMT NK  MQ  +D+    +
Sbjct: 402 DMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKI 435

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 4/41 (9%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           NLT G       TDV+NASRT+LM+I TL+WD  +C ++ I
Sbjct: 174 NLTKGN----CYTDVTNASRTLLMDINTLQWDEKMCKIFNI 210

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score =  255 bits (654), Expect = 1e-83
 Identities = 69/152 (45%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
             S   LLTT+ + +  +   YALEGS+ VAG+A+ WLRD + M+    + E LA   + 
Sbjct: 281 QLSDNDLLTTIGYGINGKVY-YALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKG 339

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
             +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKKD
Sbjct: 340 DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKD 399

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            GI +  L+VDGG   N  LMQ QAD+  I V
Sbjct: 400 SGIDIPLLKVDGGAAKNDLLMQFQADILDIDV 431

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            LT G+    ++TD SNASRTML NI  LEWD  +  +  I
Sbjct: 173 KLTDGQ---VHVTDYSNASRTMLYNIHKLEWDQEILDLLNI 210

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score =  254 bits (652), Expect = 2e-83
 Identities = 73/152 (48%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S  GLLTT+A+ +  +   YALEGS+ V+G+A+ WLRD + M+    + ES A     
Sbjct: 282 VKSESGLLTTIAYGIDGKVN-YALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDS 340

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           T  VY VPAF GL  PYW  +ARG I G+T  T + H +RA LE++C+QTRD++EAM KD
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVMEAMSKD 400

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            GI +  L+VDGG   N  +MQ QAD+    V
Sbjct: 401 SGIDVQSLRVDGGAVKNNFIMQFQADIVNTSV 432

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            L+G      +ITD SNASRT++ NI  LEWD  L  +  +
Sbjct: 174 KLSGKA---AHITDYSNASRTLMFNIHDLEWDDELLELLTV 211

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score =  250 bits (642), Expect = 7e-82
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S +GLL TVA+ LG     YALEGS+ VAGAA+ WL++ VG++    E+E+LA S   
Sbjct: 277 VLSEKGLLATVAWSLGGRAT-YALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVED 334

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           TGDVYFVPAF+GL APYW P ARG + G+T  T+R H+ RAALE + FQ RD++ AM+++
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEE 394

Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
            G++L  L+ DGGM  N+  ++ QADL G+PV
Sbjct: 395 AGVRLKVLKADGGMAQNRLFLKIQADLLGVPV 426

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
           NLTGGK    + TD +NASRT+L N+ TL WDP L     I
Sbjct: 170 NLTGGK---VHATDPTNASRTLLFNLHTLAWDPELLEALGI 207

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score =  250 bits (641), Expect = 2e-81
 Identities = 79/154 (51%), Positives = 101/154 (65%), Gaps = 3/154 (1%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
           V S+  LLTT+A++L  E   YALEGS+ VAGAA+ WLRD + ++    +  SLAES   
Sbjct: 301 VRSKNRLLTTIAYRLDGE-TTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADP 359

Query: 65  TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
           + +VY VPAF+GL AP+W PDARG I G+T +T      RAALEA+C+QTRD+LEAM KD
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKD 419

Query: 125 C--GIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
                    L+VDGGM A+   MQ  +DL   PV
Sbjct: 420 WRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPV 453

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            LTGG+    + TD +NASRT+L NI    WD  L  V  +
Sbjct: 194 RLTGGE---CFCTDATNASRTLLYNIAENAWDDELTEVLRV 231

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score =  242 bits (619), Expect = 2e-78
 Identities = 75/148 (50%), Positives = 93/148 (62%), Gaps = 3/148 (2%)

Query: 9   QGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDV 68
             LLTT+A+ L      YALEGS+ V GAA+ WLRD + ++    E E LA        V
Sbjct: 277 DNLLTTIAWGLNGRVS-YALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGV 335

Query: 69  YFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQ 128
           YFVPAF GL APYW   ARGII GIT  T R H+ RA LEAI + TRD+++ M+K   +Q
Sbjct: 336 YFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEKL--VQ 393

Query: 129 LIKLQVDGGMTANKHLMQTQADLCGIPV 156
           + +L+VDGG TAN  LMQ QAD+    V
Sbjct: 394 IKELRVDGGATANDFLMQFQADILNRKV 421

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score = 65.3 bits (160), Expect = 7e-13
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 5/41 (12%)

Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
            LTG      ++TD SNASRTML NI+ L+WD  L  +++I
Sbjct: 169 RLTGE-----HVTDYSNASRTMLFNIKKLDWDDELLELFDI 204

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504

 Score =  146 bits (370), Expect = 8e-42
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 8/156 (5%)

Query: 3   FKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMV-TGVEEIESLAE- 60
            K+D         A     +   Y L G V   G   NW R  +       ++   +A+ 
Sbjct: 272 PKIDPSASYFCYPA-----DKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQT 326

Query: 61  SHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEA 120
           +   + ++ F+P   G  AP W  +ARG   G+T    +  + RA +E I F   D    
Sbjct: 327 APAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAASN 386

Query: 121 MKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           + K+   + + +   GG   +  + Q  A++  +P+
Sbjct: 387 LIKN-TKKPVAINATGGFLKSDFVRQLCANIFNVPI 421

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202
           GK +TD + A+ T ++N++TL WD  L  + +I  +
Sbjct: 167 GKLVTDTTMAAGTGILNLKTLTWDQELLDILKIKKE 202

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489

 Score =  138 bits (350), Expect = 6e-39
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 5/154 (3%)

Query: 5   VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
             +   L   +  + G     Y +  ++         L++    +  +  + +  ++   
Sbjct: 271 FTNDTALAANITNEGG-AEGRYRVLKNIMGLWLLQRVLQE--RQINDLPALIAATQALPA 327

Query: 65  TGDVYFV--PAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMK 122
              +       F        +  A           +   + R   +++     D+L  + 
Sbjct: 328 CRFIINPNDDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELA 387

Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           +  G    +L + GG   N  L Q  AD CGI V
Sbjct: 388 QLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRV 421

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202
           GK   + +NA+ T L+NI + +WD  L      N  
Sbjct: 170 GKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKA 205

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508

 Score =  106 bits (267), Expect = 3e-27
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 26  YALEGSVAVAGAAMNWLRDNVGMVTGV---EEIESLAESHR-HTGDVYFVPAFSGLYAPY 81
           YA  G +A  G+A+NWL   +    G     ++++LA         +  +P F G   P 
Sbjct: 295 YAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPI 354

Query: 82  WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN 141
             P A G   G++   TRGH+ RA LEA+    R  +  +  D G    +     G T +
Sbjct: 355 HDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVL-DDIGHAPQRFFASDGGTRS 413

Query: 142 KHLMQTQADLCGIPV 156
           +  M   AD+   PV
Sbjct: 414 RVWMGIMADVLQRPV 428

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 5/35 (14%), Positives = 14/35 (40%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           G+ + D + A     +++ +   +  L  +  I  
Sbjct: 173 GERVVDRNWALEGGFIDLASGTVEADLVALAHIPP 207

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484

 Score =  101 bits (255), Expect = 1e-25
 Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 26  YALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGD-VYFVPAFSGLYAPYWQP 84
           + L   +  A + ++W     G ++ V  + + A+    + + V+F+P  SG   P+  P
Sbjct: 285 WHLMSVMLSAASCLDWAAKLTG-LSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNP 343

Query: 85  DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHL 144
            A+G+  G+T       + RA LE + +   D ++ +   CGI+   + + GG   +++ 
Sbjct: 344 QAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV-HACGIKPQSVTLIGGGARSEYW 402

Query: 145 MQTQADLCGIPV 156
            Q  AD+ G  +
Sbjct: 403 RQMLADISGQQL 414

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 7/35 (20%), Positives = 22/35 (62%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           G++ +D+S+A+ TM +++   +W  ++    +++ 
Sbjct: 162 GEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSR 196

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511

 Score =  100 bits (250), Expect = 7e-25
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 9/137 (6%)

Query: 26  YALEGSVAVAGAAMNWLRDNVGMVTGV------EEIESLAESHRHTGDVYFVPAFSGLYA 79
                 V  AG  + W    VG   G           +  +       + FVP       
Sbjct: 297 TLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERC 356

Query: 80  PYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT 139
           P   P  RG + G+T  TTR  I+ A LE      R   E +     + L+K+   GG  
Sbjct: 357 PVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELL-GMEKVGLLKVV--GGGA 413

Query: 140 ANKHLMQTQADLCGIPV 156
            ++  ++  AD   + +
Sbjct: 414 RSEAWLRMIADNLNVSL 430

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
           G++ TD +NAS T L   +   W   L   +  ++
Sbjct: 171 GRHATDRTNASTTGLYRPKDDAWHVELLADYGFSL 205

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554

 Score = 99.7 bits (249), Expect = 1e-24
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 24/154 (15%)

Query: 26  YALEGSVAVAGAAMNWLRDNVGMV---------TGVEEIESLAESHRH-----------T 65
           +  EG  +  GA ++ +  +              G    E+L    R            T
Sbjct: 318 WLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLT 377

Query: 66  GDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIV---RAALEAICFQTRDILEAMK 122
            D++ +P F G  +P   P+  GII G+   TT   +     A ++A+   TR I+E M 
Sbjct: 378 NDIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETM- 436

Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
              G  +  +   GG T N   +Q  A+  G  +
Sbjct: 437 NQNGYNIDTMMASGGGTKNPIFVQEHANATGCAM 470

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515

 Score = 88.2 bits (219), Expect = 9e-21
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 35  AGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIICGI 93
               ++  R  +G+    +E+  LA + +     +  VP F G   P   P+A     G+
Sbjct: 333 GSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTPNR-PNATATFSGM 389

Query: 94  T-EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC 152
           T  +TTR ++ RA +E +    RD LE + +  G  + ++ + GG   ++ +      + 
Sbjct: 390 TLANTTRENLARAFVEGLLCSQRDCLELI-RSLGASITRILLIGGGAKSEAIRTLAPSIL 448

Query: 153 GIPV 156
           G+ V
Sbjct: 449 GMDV 452

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 10/91 (10%)

Query: 67  DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
               +P     + PY      G    I           AA           L+ +     
Sbjct: 335 GRMILPTLMRGFGPYP----HGRFAWINRPEDWFERRAAACLYAALVADTALDLIGSTG- 389

Query: 127 IQLIKLQVDGGMTANKHLMQTQADLC-GIPV 156
               ++ V+G        ++  A L     V
Sbjct: 390 ----RILVEGRFAEADVFVRALASLRPDCAV 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	100.0
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	100.0
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	100.0
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	100.0
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	100.0
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	100.0
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	100.0
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	100.0
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	100.0
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	100.0
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	100.0
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	100.0
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	100.0
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	100.0
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	100.0
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	100.0
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	100.0
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	99.95
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	99.93
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	99.41
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	97.81
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	97.66
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.14
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	97.0
3qbx_A	371	Anhydro-N-acetylmuramic acid kinase; acetate and s	96.99
3cqy_A	370	Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1	96.74
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	95.7
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	95.64
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	95.56
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	95.38
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	95.08
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	94.98
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	94.93
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	94.63
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	94.6
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	94.54
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	93.56
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	93.1
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	92.1
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	91.98
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	91.26
3ven_A	576	O-carbamoyltransferase TOBZ; antibiotic biosynthes	89.24
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	89.05
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	88.57
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	84.9
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	82.27

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.1e-41  Score=301.73  Aligned_cols=192  Identities=42%  Similarity=0.631  Sum_probs=163.0

Q ss_pred             CCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355           5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP   84 (204)
Q Consensus         5 ~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~   84 (204)
                      +.+..|+++++||.++. ++.|.++|+++++|.+++|+++.++...+|+++++++++.+++++++|+|||.|+|+|+|||
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~lP~l~Ger~P~~d~  379 (520)
T 4e1j_A          301 VRSKNRLLTTIAYRLDG-ETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDP  379 (520)
T ss_dssp             CCCSSSCEEEEEEEETT-EEEEEEEEEESCSHHHHHHHHHTTCCC-----CHHHHHTSCTTCCCEEECCTTCBCTTTCBT
T ss_pred             ccCCCceeeEEeEecCC-CceEEEcchHhhHHHHHHHHHHHcCCcccHHHHHHHHhcCCCCCcEEEEcCccCCCCCCCCC
Confidence            34467899999998763 46899999999999999999999886567889999999888899999999999999999999


Q ss_pred             CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355          85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD---CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus        85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~---~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ++||.|+|++..|+++||+||++|||||++|+++|.|++.   .| ++++|+++||++||++|+||+||++|+||.++..
T Consensus       380 ~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~  458 (520)
T 4e1j_A          380 DARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVI  458 (520)
T ss_dssp             TCCCEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEEESC
T ss_pred             CCCEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEecCC
Confidence            9999999999999999999999999999999999999885   47 8899999999999999999999999999998765


Q ss_pred             C----------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhcc
Q psy9355         162 G----------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEIN  200 (204)
Q Consensus       162 ~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~  200 (204)
                      .          ++++.|.|+|++++. ++++..++|+|+++..+ |++.
T Consensus       459 ~e~~alGAA~lA~~a~G~~~~~~~~~-~~~~~~~~~~P~~~~~~-~~~~  505 (520)
T 4e1j_A          459 LETTALGVAWLAGSRAGVWPNQEAFA-KSWARDRRFEPHMDEAT-RKVK  505 (520)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCHHHHH-HTCCEEEEECCCSCHHH-HHHH
T ss_pred             CccHHHHHHHHHHHHcCCcCCHHHHH-hhcCCCeEECCCCCHHH-HHHH
Confidence            2          235678999999974 77788899999988665 3443

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=100.00  E-value=6.7e-41  Score=298.70  Aligned_cols=188  Identities=38%  Similarity=0.619  Sum_probs=168.7

Q ss_pred             CCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355           5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP   84 (204)
Q Consensus         5 ~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~   84 (204)
                      +.+..|++++++|.++. ++.|.++|+++++|.+++|+++.++...+|+++++++++.+..++++|+|||.|+|+|+||+
T Consensus       281 ~~~~~~~~~~~~~~~~g-~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~Ger~P~~d~  359 (506)
T 3h3n_X          281 QLSDNDLLTTIGYGING-KVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS  359 (506)
T ss_dssp             CSCCTTSEEEEEEEETT-EEEEEEEEEECCSSHHHHHHHHTSCCCSSTTHHHHHHTTCCSCSCCEEECCTTCBCTTTCBT
T ss_pred             ccCCCceEEEeeeecCC-CCEEEEecchhhHHHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCceEEeccccCCCCCccCC
Confidence            34567899999999753 45899999999999999999999886667899999999887668999999999999999999


Q ss_pred             CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--
Q psy9355          85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--  162 (204)
Q Consensus        85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--  162 (204)
                      ++||.|+|++..|+++||+||++|||||++|++++.|++..|.++++|+++||++||++|+||+||++|+||.++...  
T Consensus       360 ~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~  439 (506)
T 3h3n_X          360 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLET  439 (506)
T ss_dssp             TCCCEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCEEEEESGGGGCHHHHHHHHHHHTSEEEECSSSCH
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEecccccCHHHHHHHHHHhCCeEEecCCCcc
Confidence            999999999999999999999999999999999999988668899999999999999999999999999999987752  


Q ss_pred             --------CcccccccCCHHHHHHHhhccCeEeecCcchh
Q psy9355         163 --------GKDGGKYITDVSNASRTMLMNIETLEWDPMLC  194 (204)
Q Consensus       163 --------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~  194 (204)
                              ++++.|.|+|++++ +++++..++|+|+++..
T Consensus       440 ~alGaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P~~~~~  478 (506)
T 3h3n_X          440 TALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFTPEMPAE  478 (506)
T ss_dssp             HHHHHHHHHHHHTTSSCSHHHH-HTTCCCCCEECCCSCHH
T ss_pred             hhHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECCCCCHH
Confidence                    23577899999985 67888899999998754

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=100.00  E-value=5e-41  Score=299.19  Aligned_cols=193  Identities=39%  Similarity=0.612  Sum_probs=170.8

Q ss_pred             CCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355           5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP   84 (204)
Q Consensus         5 ~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~   84 (204)
                      +.+..|++++++|.++. +..|.++|+++++|.+++|+++.++...+|+++++++++.+..++++|+|||.|+|+|+||+
T Consensus       282 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~  360 (501)
T 3g25_A          282 VKSESGLLTTIAYGIDG-KVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDS  360 (501)
T ss_dssp             CCCSSSCEEEEEEEETT-EEEEEEEEEESCSTHHHHHHHHTSCCCSSGGGHHHHHTTSSCCTTCEEECCTTCBCTTTCBT
T ss_pred             ccCCCCeEEEeeEecCC-ccEEEEecccccHHHHHHHHHHHcCCCCcHHHHHHHHhhCCCCCeEEEecccccCCCCCCCC
Confidence            34457899999998753 35899999999999999999999876567999999998887668999999999999999999


Q ss_pred             CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--
Q psy9355          85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--  162 (204)
Q Consensus        85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--  162 (204)
                      ++||.|+|++..|+++||+||++|||||++|++++.|++..|.++++|+++||++||++|+||+||++|+||.++...  
T Consensus       361 ~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~~~e~  440 (501)
T 3g25_A          361 EARGAIFGLTRGTEKEHFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQET  440 (501)
T ss_dssp             TCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCH
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHhCCceEecCCCcc
Confidence            999999999999999999999999999999999999988678899999999999999999999999999999987752  


Q ss_pred             --------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhcc
Q psy9355         163 --------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEIN  200 (204)
Q Consensus       163 --------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~  200 (204)
                              ++++.|.|+|++++ +++++..++|+|+++..+ |+++
T Consensus       441 ~alGaA~la~~a~G~~~~~~~~-~~~~~~~~~~~P~~~~~~-~~~~  484 (501)
T 3g25_A          441 TALGAAFLAGLAVGFWESKDDI-AKNWKLEEKFDPKMDEGE-REKL  484 (501)
T ss_dssp             HHHHHHHHHHHHTTSSSCTHHH-HHHCCEEEEECCCCCHHH-HHHH
T ss_pred             hHHHHHHHHHHHhCccCCHHHH-HHhccCCeEECCCCCHHH-HHHH
Confidence                    12577899999985 678888999999987653 4443

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=100.00  E-value=1.1e-40  Score=297.10  Aligned_cols=194  Identities=45%  Similarity=0.720  Sum_probs=171.2

Q ss_pred             CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355           6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD   85 (204)
Q Consensus         6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~   85 (204)
                      .+..++++++||.++..++.|+++|+++++|.+++|+++.++...+|+++++++++.++++|++|+|+|.|+|+|+|||+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~  360 (504)
T 2d4w_A          281 MSKNGLLTTVCYKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYWRPD  360 (504)
T ss_dssp             CCSSSCEEEEEECCTTSCCEEEEEEEESCSHHHHHHHHHTTCTTTTCSCTHHHHTTSSSCTTCEEECTTCCCSTTTCCCC
T ss_pred             cCCCCcEEEEEEEcCCCCceEEEcchhhhHHHHHHHHHHHhCCCCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCC
Confidence            34568999999986422348999999999999999999988765668889999988888889999999999999999999


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355          86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---  162 (204)
Q Consensus        86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---  162 (204)
                      +||.|+|++..|+++||+||++|||||++|++++.|++..|.++++|+++||++||++|+||+||++|+||.++...   
T Consensus       361 arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~  440 (504)
T 2d4w_A          361 ARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNADSGVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETT  440 (504)
T ss_dssp             SCEEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCcccCHHHHHHHHHHhCCeEEeCCCCcch
Confidence            99999999999999999999999999999999999987678889999999999999999999999999999988753   


Q ss_pred             -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                             ++++.|.|+|++++ .++++..++|+|+++. +.|++.+
T Consensus       441 alGaA~lA~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~-~~y~~~y  484 (504)
T 2d4w_A          441 ALGAAYAAGIAVGFWKGEQDV-IDNWAEDKRWSPSMES-GERERLY  484 (504)
T ss_dssp             HHHHHHHHHHHHTSSCSHHHH-HHHCCEEEEECCCSCH-HHHHHHH
T ss_pred             HHHHHHHHHhhcCccCCHHHH-HhhcCCCeEEccCCCH-HHHHHHH
Confidence                   12567889999997 4777888899999887 7777654

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=100.00  E-value=3e-40  Score=294.21  Aligned_cols=194  Identities=35%  Similarity=0.523  Sum_probs=172.0

Q ss_pred             CCCCCceeeeeeecCC-CcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355           6 DSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP   84 (204)
Q Consensus         6 ~~~~g~~~~~~~~~~~-~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~   84 (204)
                      .+..++++++||.++. .++.|+++|+++++|.+++|+++ ++...+|+++++++++.++++|++|+|+|.|+|+|+||+
T Consensus       284 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~  362 (503)
T 2w40_A          284 YSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLK-NKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRS  362 (503)
T ss_dssp             CCSSSCEEEEEECCSTTSCCEEEEEEEESCSHHHHHHHHH-TTSSSCGGGHHHHHHHCCSCTTCEEECCTTCBCTTTCBT
T ss_pred             cCCCCceeEEEeecCCCCCceEEEechhhhhHhHHHHHHH-hCCcCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCC
Confidence            3456889999998642 12489999999999999999999 876567999999998888888999999999999999999


Q ss_pred             CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355          85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQL-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-  162 (204)
Q Consensus        85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-  162 (204)
                      ++||.|+|++..|+++|++||++|||||++|+++|.|++..|.++ ++|+++||++||++|+|++||++|+||.++... 
T Consensus       363 ~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~~~e  442 (503)
T 2w40_A          363 DARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKE  442 (503)
T ss_dssp             TCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSC
T ss_pred             CCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEeCccccCHHHHHHHHHHHCCeEEecCCCc
Confidence            999999999999999999999999999999999999987668888 999999999999999999999999999988753 


Q ss_pred             ---------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 ---------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 ---------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                               ++++.|.|+|++++.+.|++..++|+|+++. +.|++.+
T Consensus       443 ~~alGaA~la~~~~G~~~~~~~~~~~~~~~~~~~~P~~~~-~~y~~~y  489 (503)
T 2w40_A          443 VTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDD-KKRKKKT  489 (503)
T ss_dssp             HHHHHHHHHHHHHTTCSSCHHHHHHHHTCEEEEECCCSCH-HHHHHHH
T ss_pred             chHHHHHHHHHHHhCccCCHHHHHHhccCCCcEEccCCCH-HHHHHHH
Confidence                     1256788999999988878888999999887 7777654

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=100.00  E-value=1e-40  Score=298.81  Aligned_cols=191  Identities=40%  Similarity=0.594  Sum_probs=164.9

Q ss_pred             CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355           6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD   85 (204)
Q Consensus         6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~   85 (204)
                      .+..++++.+++... .++.|.++|+++++|.+++||++.++......+.+..+...++++|++|+|+|.|+|+|+|||+
T Consensus       281 ~~~~~~~~~~~~~~~-~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~gl~~lP~~~G~r~P~~d~~  359 (526)
T 3ezw_A          281 KSENGLLTTIACGPT-GEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPY  359 (526)
T ss_dssp             CCSSSCEEEEEECTT-SCEEEEEEEEESCSHHHHHHHHHTSCCCCSSSCHHHHHTTSSSCTTCEEECCTTCBCTTTCBTT
T ss_pred             cccccceeeeeeccC-CcceeeeHHHHHHHHHHHHHHHHHhccccchhHHHHHHhccCCCCCeEEeCCCCCCCCCCCCcc
Confidence            345677777777644 3678999999999999999999998865444445556666668999999999999999999999


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355          86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---  162 (204)
Q Consensus        86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---  162 (204)
                      +||+|+||+..|+++||+||++|||||.+|+++|.|++..|.++++|+++||++||++|+||+||++|+||.++...   
T Consensus       360 arG~~~Glt~~~~~~~i~RAvlEgia~~~r~~le~l~~~~g~~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~~  439 (526)
T 3ezw_A          360 ARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVT  439 (526)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHH
T ss_pred             cCeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECchhhCHHHHHHHHHHHCCEEEeCCCCchH
Confidence            99999999999999999999999999999999999988789999999999999999999999999999999998763   


Q ss_pred             -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhh
Q psy9355         163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWE  198 (204)
Q Consensus       163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~  198 (204)
                             +++|.|+|+|++|+. ++++..++|+|+++..+.|+
T Consensus       440 alGAA~lA~~a~G~~~~~~e~~-~~~~~~~~~~P~~~~~~~~~  481 (526)
T 3ezw_A          440 ALGAAYLAGLAVGFWQNLDELQ-EKAVIEREFRPGIETTERNY  481 (526)
T ss_dssp             HHHHHHHHHHHTTSSSCGGGST-TCCCEEEEECCCSCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHH-HhcCCCeEEcCCCCHHHHHH
Confidence                   236789999999975 45567899999988776544

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=100.00  E-value=1.3e-40  Score=297.11  Aligned_cols=188  Identities=21%  Similarity=0.182  Sum_probs=165.2

Q ss_pred             CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcC--CCCCHHHHHHHHHhcC-C---CCCeEEecCCCCCCCCC
Q psy9355           8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVG--MVTGVEEIESLAESHR-H---TGDVYFVPAFSGLYAPY   81 (204)
Q Consensus         8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~--~~~~~~~l~~~a~~~~-~---~~g~~~~P~l~G~r~P~   81 (204)
                      ..+.+.+++|.+   |+.|.+.|+++++|.+++|+++.++  ...+|+++++++++.+ +   ++|++|+|||.|+|+|+
T Consensus       282 ~~~~~~~~~~~~---~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~l~~~a~~~~~g~~~~~gl~~~P~~~Ger~P~  358 (511)
T 3hz6_A          282 PVGTIFRLAGII---AGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPV  358 (511)
T ss_dssp             CSSCCEEECSSS---TTEEEEEEEESSSHHHHHHHGGGGTCCTTSCSHHHHHHHHHHHTTCCCCTTCEEEEESSCBCSSS
T ss_pred             CCCceEEEEEec---CCceEEEeehhhHHHHHHHHHHHhcccccccHHHHHHHHHhCCCCCCCCCCEEEeCCCCCCCCCC
Confidence            567888899874   4666666999999999999999987  5457999999988764 7   89999999999999999


Q ss_pred             CCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcE-Eecc
Q psy9355          82 WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV-GKNL  160 (204)
Q Consensus        82 ~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv-~~~~  160 (204)
                      ||+++||.|+|++..|+++||+||++|||||++|++++.|++  |. +++|+++||++||++|+||+||++|+|| .++.
T Consensus       359 ~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~~~l~~--g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~  435 (511)
T 3hz6_A          359 ELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGM--EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPD  435 (511)
T ss_dssp             CBSSCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTG--GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCC
T ss_pred             CCCccceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecC
Confidence            999999999999999999999999999999999999999976  77 9999999999999999999999999999 8866


Q ss_pred             CC----------CcccccccCCHHHHHHHh---hccCeEeecCcchhhhhhccC
Q psy9355         161 TG----------GKDGGKYITDVSNASRTM---LMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       161 ~~----------~a~g~g~~~~~~~a~~~~---~~~~~~~~P~~~~~~~y~~~~  201 (204)
                      ..          ++++.|.++|++++++++   ++..++|+|+++.++.|++.+
T Consensus       436 ~~e~~alGaA~lA~~a~G~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y  489 (511)
T 3hz6_A          436 AHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHPQPCDEGRRRRKF  489 (511)
T ss_dssp             GGGHHHHHHHHHHHHHTTSCSCHHHHHHHHHTC---CCCBCCCCCCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCcCCHHHHHHHhhccCCCCeEECcCHHHHHHHHHHH
Confidence            42          235778999998889999   899999999999888887765

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=100.00  E-value=2.5e-40  Score=295.18  Aligned_cols=185  Identities=24%  Similarity=0.323  Sum_probs=160.4

Q ss_pred             eeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCC-CC--CHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCc
Q psy9355          12 LTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGM-VT--GVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDAR   87 (204)
Q Consensus        12 ~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~-~~--~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~   87 (204)
                      +.+++|.   .|+.|+++|+++++|.+++|+++.+.. ..  +|+++++++++.+ +++|++|+|||.|+|+|+|||++|
T Consensus       284 ~~~~~~~---~~g~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~~gl~flP~~~Ger~P~~d~~ar  360 (508)
T 3ifr_A          284 LYLDYHL---VPGLYAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFAS  360 (508)
T ss_dssp             BBCCBCS---STTCBCCEEEESSSHHHHHHHHHHHSTTCTTHHHHHHHHHHHTSCTTGGGCEEECCTTCCC----CCCCC
T ss_pred             cceeeee---cCCceEEechhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHhcCCCCCCCeEEecCCCCCCCCCCCCCcC
Confidence            5566665   368899999999999999999998842 12  5899999888765 899999999999999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C--
Q psy9355          88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G--  163 (204)
Q Consensus        88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~--  163 (204)
                      |.|+|++..|+++||+||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+||++|+||.+++..  +  
T Consensus       361 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~al  439 (508)
T 3ifr_A          361 GTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVLDD-IGHAPQRFFASDGGTRSRVWMGIMADVLQRPVQLLANPLGSAV  439 (508)
T ss_dssp             CEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEECCSTHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCCCCchHH
Confidence            999999999999999999999999999999999987 58999999999999999999999999999999998752  1  


Q ss_pred             ------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         164 ------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       164 ------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                            +++.|.|+|++++ .++++..++|+|+++.++.|++.+
T Consensus       440 GaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P~~~~~~~y~~~y  482 (508)
T 3ifr_A          440 GAAWVAAIGGGDDLGWDDV-TALVRTGEKITPDPAKAEVYDRLY  482 (508)
T ss_dssp             HHHHHHHHHTCSSCCGGGG-GGGSEEEEEECCCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHH-HhhcCCCeEECcCHHHHHHHHHHH
Confidence                  2567889999986 458888999999999888888765

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=100.00  E-value=5.3e-40  Score=295.72  Aligned_cols=180  Identities=22%  Similarity=0.293  Sum_probs=160.6

Q ss_pred             CcceEEecchhhchhHHHHHHHHhcCC------------CCCHHHHHHHHHhcC-C-------CCCeEEecCCCCCCCCC
Q psy9355          22 EPVVYALEGSVAVAGAAMNWLRDNVGM------------VTGVEEIESLAESHR-H-------TGDVYFVPAFSGLYAPY   81 (204)
Q Consensus        22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~~-~-------~~g~~~~P~l~G~r~P~   81 (204)
                      .|+.|+++|+++++|.+++|+++.++.            .+.|+.+++.+++.+ +       ++|++|+|||.|+|+|+
T Consensus       314 ~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~flP~~~Ger~P~  393 (554)
T 3l0q_A          314 LPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLTNDIHMLPYFHGNRSPR  393 (554)
T ss_dssp             STTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSGGGGGGGGTTCCEECCTTCBCSSS
T ss_pred             cCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCCCccccccCceEEcccccCCCCCC
Confidence            378999999999999999999998752            134777877766543 3       68999999999999999


Q ss_pred             CCCCCcEEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355          82 WQPDARGIICGITEDTTRGHI---VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK  158 (204)
Q Consensus        82 ~~~~~~g~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~  158 (204)
                      |||++||+|+||+.+|+++||   +||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+||++|+||.+
T Consensus       394 ~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~-~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~  472 (554)
T 3l0q_A          394 ANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQ-NGYNIDTMMASGGGTKNPIFVQEHANATGCAMLL  472 (554)
T ss_dssp             CBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEE
T ss_pred             CCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEe
Confidence            999999999999999999999   889999999999999999987 6889999999999999999999999999999999


Q ss_pred             ccCC----------CcccccccCCHHHHHHHhhccCeEeec-CcchhhhhhccCC
Q psy9355         159 NLTG----------GKDGGKYITDVSNASRTMLMNIETLEW-DPMLCGVWEINMQ  202 (204)
Q Consensus       159 ~~~~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P-~~~~~~~y~~~~~  202 (204)
                      ++..          ++++.|.|+|++++++++++..++|+| |++.++.|++.++
T Consensus       473 ~~~~e~~alGAA~lA~~a~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~Y~~~y~  527 (554)
T 3l0q_A          473 PEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQTNKIKAYYDRKYR  527 (554)
T ss_dssp             ESCSCHHHHHHHHHHHHHTTSSSSHHHHHHHHCCEEEEECCCCHHHHHHHHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHcCCcCCHHHHHHHhcCCCcEEeCCCHHHHHHHHHHHH
Confidence            8753          235788999999999999999999999 9999999887653

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=100.00  E-value=1.6e-39  Score=289.07  Aligned_cols=191  Identities=44%  Similarity=0.708  Sum_probs=168.5

Q ss_pred             CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355           6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD   85 (204)
Q Consensus         6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~   85 (204)
                      .+..++++++||.++. ++.|.++|+++++|.+++|+++ ++...+|+++++++++.++++|++|+|+|.|+|+|+||++
T Consensus       278 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~  355 (495)
T 2dpn_A          278 LSEKGLLATVAWSLGG-RATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPY  355 (495)
T ss_dssp             CCSSSCEEEEEEEETT-EEEEEEEEEESCSHHHHHHHHH-TTSSSSTTTHHHHHHTCSCCSSCEEECCTTCBCTTTCBTT
T ss_pred             cCCCCceEEEEEEcCC-CCEEEEechHHhHHHHHHHHHH-cCCccCHHHHHHHHhhCCCCCcEEEecCCCCCCCCCCCCC
Confidence            3456899999999753 4689999999999999999999 8765678899999988888889999999999999999999


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C
Q psy9355          86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G  163 (204)
Q Consensus        86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~  163 (204)
                      +||.|+|++..|+++||+||++|||||+++++++.|++..|.++++|+++||++||++|+|++||++|+||.++...  +
T Consensus       356 arg~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~e~~  435 (495)
T 2dpn_A          356 ARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETT  435 (495)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCCeeEecCCcccH
Confidence            99999999999999999999999999999999999987668888999999999999999999999999999988753  1


Q ss_pred             --------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         164 --------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       164 --------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                              +.+.|.+ |++++ .++++..++|+|+++. +.|++.+
T Consensus       436 alGaA~la~~a~G~~-~~~~~-~~~~~~~~~~~P~~~~-~~y~~~~  478 (495)
T 2dpn_A          436 ALGAALMAGVGAGAL-SPEDV-AGRFREAERFLPTMPE-GRREALY  478 (495)
T ss_dssp             HHHHHHHHHHHHTSC-CHHHH-HHHCCEEEEECCCSCH-HHHHHHH
T ss_pred             HHHHHHHHHhhcCcC-CHHHH-HHhcCCCeEEccCCCH-HHHHHHH
Confidence                    2466888 99987 4777788899999887 6666543

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=100.00  E-value=3e-39  Score=287.40  Aligned_cols=191  Identities=42%  Similarity=0.578  Sum_probs=168.4

Q ss_pred             CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355           6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD   85 (204)
Q Consensus         6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~   85 (204)
                      .+..|+++++||.++. ++.|+++|+++++|.+++|+++.++...+|+++++++++.+++++++|+|+|.|+|+|+||++
T Consensus       274 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~  352 (497)
T 2zf5_O          274 LYSDNLLTTIAWGLNG-RVSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPYWDQF  352 (497)
T ss_dssp             CCCTTSEEEEEEEETT-EEEEEEEEEESCSHHHHHHHHHTSCCCSCGGGHHHHHTTSSSCTTCEEECCTTCBCTTTCBTT
T ss_pred             cCCCCcEEEEEEEcCC-CCEEEEechhhhHHHHHHHHHHHhCCCCcHHHHHHHHhhCCCCCceEEecCcCCCCCCCCCCC
Confidence            3456889999999753 468999999999999999999998765678999999988888889999999999999999999


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355          86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---  162 (204)
Q Consensus        86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---  162 (204)
                      +||.|+|++..|+++|++||++|||||+++++++.|++ .+ ++++|+++||++||++|+|++||++|+||.++...   
T Consensus       353 arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~l~~l~~-~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~  430 (497)
T 2zf5_O          353 ARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEK-LV-QIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETT  430 (497)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHTT-TS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcCCCcch
Confidence            99999999999999999999999999999999999976 45 78999999999999999999999999999988763   


Q ss_pred             -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                             ++++.|.|+|++++ .++++..++|+|+++. +.|++.+
T Consensus       431 alGaA~lA~~~~g~~~~~~~~-~~~~~~~~~~~P~~~~-~~y~~~y  474 (497)
T 2zf5_O          431 ALGAAYLAGLAVDYWADTREI-AELWKAERIFEPKMDE-KTRERLY  474 (497)
T ss_dssp             HHHHHHHHHHHTTSSCCHHHH-HTTCCEEEEECCCCCH-HHHHHHH
T ss_pred             HHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECCCccH-HHHHHHH
Confidence                   12567889999997 5777888899999876 6666543

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=100.00  E-value=3.6e-39  Score=287.42  Aligned_cols=188  Identities=19%  Similarity=0.312  Sum_probs=162.5

Q ss_pred             CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCC
Q psy9355           8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMV-TGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPD   85 (204)
Q Consensus         8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~   85 (204)
                      ..+.+  +||.++  ++.|+++|+++++|.+++|+++.++.. .+++++.+++++.+ +++|++|+|||.|+|+|+||++
T Consensus       276 ~~~~~--~~~~~~--~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~~~Ger~P~~d~~  351 (504)
T 3ll3_A          276 PSASY--FCYPAD--KTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWDAN  351 (504)
T ss_dssp             TTCCS--EEEEEE--TTEEEEEEEESCSHHHHHHHHHHHTCTTCCHHHHHHHHHTSCTTGGGCEEECCTTCBCTTTCBTT
T ss_pred             CCCce--EEEEeC--CCeEEEEeehhhHHHHHHHHHHHhccchhHHHHHHHHHhcCCCCCCCeEEecCccCCCCCCCCCc
Confidence            34444  677655  589999999999999999999988642 23444444777776 8899999999999999999999


Q ss_pred             CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355          86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---  162 (204)
Q Consensus        86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---  162 (204)
                      +||+|+|++..|+++||+||++|||||++|+++|.|++ .+.++++|+++||++||++|+||+||++|+||.++...   
T Consensus       352 arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~  430 (504)
T 3ll3_A          352 ARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAASNLIK-NTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTMKEQQSG  430 (504)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TSCCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred             cCeEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEeCchhcCHHHHHHHHHhhCCeEEecCCCCch
Confidence            99999999999999999999999999999999999987 47789999999999999999999999999999998652   


Q ss_pred             -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                             ++++.|.++|+++ ++++++..++|+|+++.++.|++.+
T Consensus       431 alGaA~lA~~a~G~~~~~~~-~~~~~~~~~~~~P~~~~~~~Y~~~y  475 (504)
T 3ll3_A          431 TLAAMFLARQALGLNQDLSE-IGQFAQADKVYFPNPKEAATYQKLF  475 (504)
T ss_dssp             HHHHHHHHHHHTTSCCSGGG-GGGTSCEEEEECCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCccCCHHH-HHHhcCCCeEEccCHHHHHHHHHHH
Confidence                   1256788999987 6788898999999999888887765

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=100.00  E-value=4.2e-38  Score=279.16  Aligned_cols=186  Identities=18%  Similarity=0.297  Sum_probs=154.3

Q ss_pred             CceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcE
Q psy9355          10 GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARG   88 (204)
Q Consensus        10 g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g   88 (204)
                      +.+.++++.   .|+.|+++++++++|.+++|+++.++. .+|+++++.++..+ ++++++|+|||.|+|+|+||+++||
T Consensus       272 ~~~~~~~~~---~~g~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~~~~~a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g  347 (484)
T 2itm_A          272 SAVHSFCHA---LPQRWHLMSVMLSAASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKG  347 (484)
T ss_dssp             SSCEEEECS---STTCEEEEEEECCHHHHHHHHHHHTTC-CSHHHHHHHGGGCCTTSCCCEEEEEEC--------CCEEE
T ss_pred             cceEEeecc---cCCeeeeeehhhhHHHHHHHHHHhcCc-ccHHHHHHHHhcCCCCCCCeEEeCCCCCCCCCCCCCCCce
Confidence            344556654   468999999999999999999998864 46888888887765 8999999999999999999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cc-
Q psy9355          89 IICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GK-  164 (204)
Q Consensus        89 ~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a-  164 (204)
                      .|+|++.+|+++||+||++|||+|++|++++.|++ .|.++++|+++||++||++|+|++||++|+||.+++..   ++ 
T Consensus       348 ~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~al  426 (484)
T 2itm_A          348 VFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPAL  426 (484)
T ss_dssp             EEEEEETTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHH
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHH
Confidence            99999999999999999999999999999999987 58888999999999999999999999999999998763   22 


Q ss_pred             -------ccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         165 -------DGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       165 -------~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                             ++.|.++|++++.+.+ +..++|+|+++.++.|++.+
T Consensus       427 GAA~lA~~~~g~~~~~~~~~~~~-~~~~~~~P~~~~~~~y~~~y  469 (484)
T 2itm_A          427 GAARLAQIAANPEKSLIELLPQL-PLEQSHLPDAQRYAAYQPRR  469 (484)
T ss_dssp             HHHHHHHHHHCTTSCHHHHSCCC-CEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCCHHHHHHhc-CCCeEECCCHHHHHHHHHHH
Confidence                   3567889999986654 56788999999888887654

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=100.00  E-value=1.5e-34  Score=258.11  Aligned_cols=183  Identities=19%  Similarity=0.216  Sum_probs=154.2

Q ss_pred             CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCC
Q psy9355           6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQP   84 (204)
Q Consensus         6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~   84 (204)
                      .+..+.+.++++.    ++.|+.+++++++|.+++|+++.++.  +|+++++++++.+ +++|++|+|||.|+|+|+| |
T Consensus       308 ~~~~~~~~~~~~~----~g~~~~~~~~~~gg~~l~w~~~~~~~--~~~~l~~~a~~~~~g~~gl~~lP~~~Ger~P~~-~  380 (515)
T 3i8b_A          308 YDLTGAVSGFADC----TGHYLPLACTINGSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTPNR-P  380 (515)
T ss_dssp             CCTTSCSEEEECS----SSSEEEEEEESCSTHHHHHHHHHHTC--CHHHHHHHHHHSCTTGGGCEEECCTTCBTTTTB-T
T ss_pred             cCCCCcEEeeecC----CCCEEEeeecccHHHHHHHHHHHhCC--CHHHHHHHHHhCCCCCCCeEEecCCCCCcCCCC-c
Confidence            3456778888875    67899999999999999999998875  6999999999886 8889999999999999976 9


Q ss_pred             CCcEEEEcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355          85 DARGIICGITEDT-TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-  162 (204)
Q Consensus        85 ~~~g~~~Gl~~~~-~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-  162 (204)
                      ++||.|+|++..| +++||+||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+||++|+||.++... 
T Consensus       381 ~arg~~~Gl~~~~~~~~~l~RAvlEgia~~~r~~l~~l~~-~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e  459 (515)
T 3i8b_A          381 NATATFSGMTLANTTRENLARAFVEGLLCSQRDCLELIRS-LGASITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDE  459 (515)
T ss_dssp             TCCCEEESCCTTTCSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEECCCC
T ss_pred             CcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEECchhcCHHHHHHHHHHhCCceEecCCcc
Confidence            9999999999999 99999999999999999999999987 68999999999999999999999999999999997752 


Q ss_pred             -Cc--------ccccccCCHHHHHHHhh-ccCeEeecCc--chhhhhhcc
Q psy9355         163 -GK--------DGGKYITDVSNASRTML-MNIETLEWDP--MLCGVWEIN  200 (204)
Q Consensus       163 -~a--------~g~g~~~~~~~a~~~~~-~~~~~~~P~~--~~~~~y~~~  200 (204)
                       ++        ++.|.+++.++    +. .....|+|++  +..+.|++-
T Consensus       460 ~~alGAA~lA~~a~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  505 (515)
T 3i8b_A          460 YVAIGAARQAAWVLSGETEPPA----WQLTIDGVETGEPTEAVYEAYAKA  505 (515)
T ss_dssp             HHHHHHHHHHHHHHHCCSSCCC----CCCCEEEEECCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCChhH----hhhhccccCCCCccHHHHHHHHHH
Confidence             22        34566655542    22 2345566665  566677653

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=100.00  E-value=3.4e-34  Score=257.10  Aligned_cols=180  Identities=15%  Similarity=0.026  Sum_probs=152.7

Q ss_pred             eeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEE
Q psy9355          13 TTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIIC   91 (204)
Q Consensus        13 ~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~   91 (204)
                      ..+++.++  ++.|+.+++++++|.+++|+++.++. .+|+++++++++.+ +++|++|+|||.|+|.|+    ++|.|+
T Consensus       321 ~~~~~~~~--~~~~~~~~~~~~gg~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lp~~~Ger~P~----~~G~~~  393 (538)
T 4bc3_A          321 HIFCNPVD--SQHYMALLCFKNGSLMREKIRNESVS-RSWSDFSKALQSTEMGNGGNLGFYFDVMEITPE----IIGRHR  393 (538)
T ss_dssp             EEEEETTE--EEEEEEEEEESSSHHHHHHHHHHHST-TCHHHHHHHHHTSCTTGGGCEEEEESSCCSSSC----CCEEEE
T ss_pred             ceEEeecC--CCCEEEeehhhccchHHHHHHHHhcC-CCHHHHHHHHhcCCCCCCCeEEeecCCCCcCCC----CCceee
Confidence            34666543  36799999999999999999998863 57999999999887 889999999999999996    455554


Q ss_pred             ------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C
Q psy9355          92 ------GITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G  163 (204)
Q Consensus        92 ------Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~  163 (204)
                            |++ .|+++||+||++|||||++|++++.+++ .+.++++|+++||++||++|+||+||++|+||.++...  +
T Consensus       394 ~~~~~~g~~-~~~~~~l~RAvlEgia~~~r~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~  471 (538)
T 4bc3_A          394 FNTENHKVA-AFPGDVEVRALIEGQFMAKRIHAEGLGY-RVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSA  471 (538)
T ss_dssp             ECTTSCEES-CCCHHHHHHHHHHHHHHHHHHHHHHTTC-CCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEECCCTTHH
T ss_pred             ecccccccc-CCCHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEecCCCCch
Confidence                  233 2899999999999999999999999976 57788999999999999999999999999999997653  1


Q ss_pred             --------cccccc--cCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355         164 --------KDGGKY--ITDVSNASRTMLMNIETLEWDPMLCGVWEINM  201 (204)
Q Consensus       164 --------a~g~g~--~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~  201 (204)
                              +++.|.  |+|++++.+.|++..++|+|+++.++.|++.+
T Consensus       472 alGaA~lA~~a~G~~~~~~~~ea~~~~~~~~~~~~P~~~~~~~Y~~~y  519 (538)
T 4bc3_A          472 CVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALL  519 (538)
T ss_dssp             HHHHHHHHHHHHHTGGGSCHHHHHTTSCCCEEEECCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccCCCHHHHHHhhcCCCeeECCCHHHHHHHHHHH
Confidence                    245666  89999998888888899999999988888765

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=99.95  E-value=1.1e-27  Score=212.46  Aligned_cols=171  Identities=17%  Similarity=0.232  Sum_probs=134.3

Q ss_pred             CcceEEecchhhchhHHHHHHHHhcC---CCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC-----CcEEEEcC
Q psy9355          22 EPVVYALEGSVAVAGAAMNWLRDNVG---MVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD-----ARGIICGI   93 (204)
Q Consensus        22 ~p~~y~~~g~~~~~G~~~~W~~~~~~---~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~-----~~g~~~Gl   93 (204)
                      .|+.|.+++.+.  |   .|+++.+.   ....++++.+.++..++.+ .+|+|    ++.|+|+|+     .+|.+.|+
T Consensus       287 ~~~~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~-~l~~p----~~~~~~~p~~~~~~~~g~~~g~  356 (489)
T 2uyt_A          287 AEGRYRVLKNIM--G---LWLLQRVLQERQINDLPALIAATQALPACR-FIINP----NDDRFINPDEMCSEIQAACREM  356 (489)
T ss_dssp             GGGCEEEEEEEC--T---THHHHHHHHHTTCCCHHHHHHHHTTSCSSS-SCCCT----TSGGGSSCSCHHHHHHHHHHHT
T ss_pred             CCCeEEEehhHh--H---HHHHHHhhcccchhhHHHHHHHhccCCCcC-eeECC----CCCccCChhhhHHHHHHHHHhc
Confidence            378888888765  2   58877642   1245777777665555655 45788    577888887     47888888


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-Cc------
Q psy9355          94 --TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-GK------  164 (204)
Q Consensus        94 --~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-~a------  164 (204)
                        +..|+++||+||++|||||++|+++|.|++..|.++++|+++||++||++|+||+||++|+||.++... ++      
T Consensus       357 ~~~~~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~e~~alGaa~~  436 (489)
T 2uyt_A          357 AQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGI  436 (489)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEECCTTHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCChhhhHHHHHHHHHHHCCeeecCCccHhHHHHHHH
Confidence              478999999999999999999999999987668889999999999999999999999999999986642 11      


Q ss_pred             -----ccccccCCHHHHHHHhhccCeEeecCcchh-hhhhccCCC
Q psy9355         165 -----DGGKYITDVSNASRTMLMNIETLEWDPMLC-GVWEINMQP  203 (204)
Q Consensus       165 -----~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~-~~y~~~~~~  203 (204)
                           .+.|.+++++++++.+.+ .++|+||++.+ +.|++.++.
T Consensus       437 A~~a~~~~~~~~~~~~~~~~~~~-~~~~~P~~~~~~~~Y~~~~~~  480 (489)
T 2uyt_A          437 QLMTLDELNNVDDFRQVVSTTAN-LTTFTPNPDSEIAHYVALIHS  480 (489)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHSC-CEEECCCTTSHHHHHHHHTTC
T ss_pred             HHHHcCccccHHHHHHHHHhhCC-CeEECCCcchHHHHHHHHHHH
Confidence                 223445666677777755 58999999999 999887764

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=99.93  E-value=8e-27  Score=206.68  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=106.2

Q ss_pred             EEecchhhchhHHHHHHHHhcCCCCC--HHHHHHHHHhc-CCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHH
Q psy9355          26 YALEGSVAVAGAAMNWLRDNVGMVTG--VEEIESLAESH-RHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHI  102 (204)
Q Consensus        26 y~~~g~~~~~G~~~~W~~~~~~~~~~--~~~l~~~a~~~-~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l  102 (204)
                      |.+++...++|.+++|+++..+...+  .+..+..++.. ++++|++|+|||.|+|+|+||+  ||+|+||+.    .|+
T Consensus       291 ~~~~g~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~a~~~~~g~~Gl~flP~l~Ger~P~~d~--rG~~~Gl~~----~~l  364 (482)
T 3h6e_A          291 RPVPSARFMGGREIETLIEIDTRRVDIKPDQPALLAAVPEVLRHGRMILPTLMRGFGPYPHG--RFAWINRPE----DWF  364 (482)
T ss_dssp             CEEEEEEECHHHHHHHHHCSGGGCTTCGGGHHHHHHTHHHHHHTTCEEESCSSTTCSSCTTC--CCEEESCCS----SHH
T ss_pred             ccccchhhhhHHHHHHHHHhcccccccccchhhHHHhccccCCCCeEEecCCCCCCCCCCCC--ceEEeCCCH----HHH
Confidence            45677788899999999754432211  22223223322 3788999999999999999987  999999997    799


Q ss_pred             HHHHHHH--HHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhh-hCCcEEeccCC--Ccccccc
Q psy9355         103 VRAALEA--ICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADL-CGIPVGKNLTG--GKDGGKY  169 (204)
Q Consensus       103 ~rAvlEg--ia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv-~g~pv~~~~~~--~a~g~g~  169 (204)
                      +||++||  |||++|+++|.|++     .++|+++||++||++|+||+||+ +|+||.+++..  +++|+.+
T Consensus       365 ~RA~lE~~Gia~~~r~~l~~~~~-----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGAA~  431 (482)
T 3h6e_A          365 ERRAAACLYAALVADTALDLIGS-----TGRILVEGRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALR  431 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC-----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESSCCCTTGGGHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcC-----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCCCchHHHHHHH
Confidence            9999995  99999999998864     27899999999999999999999 99999999863  4555443

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=99.41  E-value=1.7e-13  Score=112.69  Aligned_cols=122  Identities=12%  Similarity=0.158  Sum_probs=94.4

Q ss_pred             hhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC-CCCCHHHHHHHHHHH
Q psy9355          31 SVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT-EDTTRGHIVRAALEA  109 (204)
Q Consensus        31 ~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~-~~~~~~~l~rAvlEg  109 (204)
                      +...+|..++|+.+.++.  +++++++++.+.+       .|+..+.|.+.   .+++.++++. ..|+++|++|+++|+
T Consensus       127 ca~GtG~~le~~a~~lg~--~~~el~~la~~~~-------~p~~~~~~c~v---fa~s~v~~l~~~g~~~~di~~av~e~  194 (270)
T 1hux_A          127 CAAGTGRFLDVMANILEV--KVSDLAELGAKST-------KRVAISSTCTV---FAESEVISQLSKGTDKIDIIAGIHRS  194 (270)
T ss_dssp             CCTTSHHHHHHHHHHHTC--CTTTHHHHHTTCC-------SCCCCCCCSHH---HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHhCC--CHHHHHHHHhhCC-------CCCCcccccch---hHhHHHHHHhhCCCCHHHHHHHHHHH
Confidence            444567899999999875  5788888876532       46777777763   3566677775 678999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Ccccccc
Q psy9355         110 ICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKY  169 (204)
Q Consensus       110 ia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~  169 (204)
                      |++.+.   +.++. .+. .++|+++||+++|+.|+|+++|++|+||.+|+..   +++|+.+
T Consensus       195 Va~~i~---~~~~~-~~~-~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl  252 (270)
T 1hux_A          195 VASRVI---GLANR-VGI-VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAAL  252 (270)
T ss_dssp             HHHHHH---HHHHT-TCC-CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHH
T ss_pred             HHHHHH---HHHhc-CCC-CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHH
Confidence            999974   33433 233 4789999999999999999999999999998863   3555544

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=97.81  E-value=0.00026  Score=58.30  Aligned_cols=142  Identities=15%  Similarity=0.045  Sum_probs=87.6

Q ss_pred             cceEEecc-hhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CCCeEEecCCCCCCCCCCCCCCcEEEEcC-----CC
Q psy9355          23 PVVYALEG-SVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH-TGDVYFVPAFSGLYAPYWQPDARGIICGI-----TE   95 (204)
Q Consensus        23 p~~y~~~g-~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~-~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl-----~~   95 (204)
                      ++.|...+ +...+|.-++-.+..++. .+++++.++|.+... .-+ +.+-.+.|...+.-..+...+.+|-     ..
T Consensus       128 ~~~f~r~~g~aaGgGtFl~l~a~ll~~-~~~~el~~lA~~g~~~~vD-l~v~DIy~~~~~~l~~~s~as~Fgk~~~l~~~  205 (287)
T 2ews_A          128 GQSQRRVGGIGTGGGMIQGLGYLLSQI-TDYKQLTDMAQHGDRNTID-LKVRHIYKDTEPPIPGDLTAANFGHVLHHLDA  205 (287)
T ss_dssp             SSCEEEEEEESCSHHHHHHHHHHHHCC-CCHHHHHHHHTTCCCTTTC-EETTTC-------CCTTSEEETTTTGGGCTTS
T ss_pred             CCceEEcCccccchhhHHHHHHHHhCC-CCHHHHHHHHHcCCccccc-cchhhhcCCCCCCcCcchhhHHHHHHHHHHhC
Confidence            34565444 444455566666666663 489999999865321 111 2222222211111223334443332     33


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecC-ccccHHHHHHHHhh---hCCcEEeccCC---Cccccc
Q psy9355          96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGG-MTANKHLMQTQADL---CGIPVGKNLTG---GKDGGK  168 (204)
Q Consensus        96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GG-ga~s~~~~Qi~Adv---~g~pv~~~~~~---~a~g~g  168 (204)
                      ..+++|++++++.+|+..+........+.  .++++|+.+|| .+.|+.+++.+.+.   .+.++.+|+..   +|+|+.
T Consensus       206 g~~~eDIaasl~~sV~~~I~~la~~~a~~--~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAa  283 (287)
T 2ews_A          206 DFTPSNKLAAVIGVVGEVVTTMAITVARE--FKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGAL  283 (287)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHH
Confidence            56899999999999988877665543332  34557999999 89999999999998   58999998875   445543

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=97.66  E-value=0.00018  Score=61.03  Aligned_cols=142  Identities=17%  Similarity=0.057  Sum_probs=91.6

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CCCeEEecCCCCCCCC--CCCCCCcEEEEcCC-----
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH-TGDVYFVPAFSGLYAP--YWQPDARGIICGIT-----   94 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~-~~g~~~~P~l~G~r~P--~~~~~~~g~~~Gl~-----   94 (204)
                      ++.|...++...||+.+-=+...+-...+++++.++|++-.. .-.+ .+=+..|...+  .-..+...+-+|-.     
T Consensus       194 ~~~f~rvgG~siGGGTflGL~~lLtg~~~~dEl~~lA~~Gd~~~vDl-lV~DIYg~~y~~~gL~~~~~ASsFGk~~~~~~  272 (360)
T 2i7n_A          194 KDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDK-LVKDIYGGDYERFGLQGSAVASSFGNMMSKEK  272 (360)
T ss_dssp             TTEEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSE-EHHHHHSSCBGGGTBCTTSEEETTTTTTSHHH
T ss_pred             CCCEEEeccccCccHhHHHHHHHHhCCCCHHHHHHHHHcCCCCcccc-eeeecccCcccccCCCccceeehhhhHhhHhh
Confidence            456776666666666544444344223689999999976431 1122 22333332211  12344555555544     


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecC-ccccHHHHHHHHhhhC------CcEEeccCC---C
Q psy9355          95 -EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGG-MTANKHLMQTQADLCG------IPVGKNLTG---G  163 (204)
Q Consensus        95 -~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GG-ga~s~~~~Qi~Adv~g------~pv~~~~~~---~  163 (204)
                       ...+++|++++++.+|+..+..+.-...+..+.  ++|+++|| .++|+..++.++..++      +++.+++..   +
T Consensus       273 ~~~~~~eDIa~gll~sVa~~I~~lA~l~A~~~~i--~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~G  350 (360)
T 2i7n_A          273 RDSISKEDLARATLVTITNNIGSIARMCALNENI--DRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFG  350 (360)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHH
Confidence             246799999999999999988775433333344  47999999 9999999999999985      788888874   3


Q ss_pred             cccc
Q psy9355         164 KDGG  167 (204)
Q Consensus       164 a~g~  167 (204)
                      |+|+
T Consensus       351 AlGA  354 (360)
T 2i7n_A          351 AVGA  354 (360)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.14  E-value=0.00052  Score=55.55  Aligned_cols=123  Identities=13%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             hhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q psy9355          32 VAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAIC  111 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia  111 (204)
                      ...+|..++-+.+.+++  +|++..+++.......     | + ..+...+.  ....+.=+....+++++++++.+.|+
T Consensus       126 ~~g~G~f~d~~a~~l~~--~~~~~~~~~~~a~~~~-----~-i-~~~~~~f~--~s~~~~~~~~~~~~~di~a~~~~~v~  194 (276)
T 4ehu_A          126 AAGTGRFLDVMAKIIEV--DVSELGSISMNSQNEV-----S-I-SSTCTVFA--ESEVISHLSENAKIEDIVAGIHTSVA  194 (276)
T ss_dssp             STTSHHHHHHHHHHHTC--CGGGHHHHHTTCSSCC-----C-C-CCCSHHHH--HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHhcc--ChhhhHHHHhcCCCCC-----C-c-CCccchhh--hhHHHHhhhccccHHHHHHHHHHHHH
Confidence            34456677777777775  5777776665432110     1 1 11110000  00000011234578999999999987


Q ss_pred             HHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355         112 FQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI  170 (204)
Q Consensus       112 ~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~  170 (204)
                      -.+...   ..+.  ...++|+++||.++|+.+.+.+++.+|+++.+|+..   +|+|+.++
T Consensus       195 ~~l~~~---~~~~--~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~  251 (276)
T 4ehu_A          195 KRVSSL---VKRI--GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALY  251 (276)
T ss_dssp             HHHHHH---HHHH--CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHH
T ss_pred             HHHHHH---HHhc--ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHH
Confidence            665543   3232  246789999999999999999999999999998874   45666554

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=97.00  E-value=0.0008  Score=54.12  Aligned_cols=100  Identities=13%  Similarity=0.200  Sum_probs=67.2

Q ss_pred             ceEEecchhhchhHHHHHH-HHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHH
Q psy9355          24 VVYALEGSVAVAGAAMNWL-RDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHI  102 (204)
Q Consensus        24 ~~y~~~g~~~~~G~~~~W~-~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l  102 (204)
                      |..........||..+.+. .+.+..  ++++.+++.... +                              ......++
T Consensus       159 g~~~~~~~~~~Gg~~~~~~l~~~l~~--~~~~ae~~k~~~-~------------------------------~~~~~~~~  205 (272)
T 3h1q_A          159 GKITATFDEPTGGTHLSLVLAGSYKI--PFEEAETIKKDF-S------------------------------RHREIMRV  205 (272)
T ss_dssp             TEEEEECCBSCCHHHHHHHHHHHHTC--CHHHHHHHHHSS-T------------------------------THHHHHHH
T ss_pred             CEEEEEecCCCcHHHHHHHHHHHhCC--CHHHHHHHHHhc-C------------------------------CHHHHHHH
Confidence            4455556677788777664 344443  455555544321 1                              12334667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ++.+++.++..++..++.    .+ .++.|+++||+++++.+.+++.+.++.||.++..
T Consensus       206 ~~~~~~~i~~~i~~~l~~----~~-~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~  259 (272)
T 3h1q_A          206 VRPVIEKMALIVKEVIKN----YD-QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIH  259 (272)
T ss_dssp             HHHHHHHHHHHHHHHTTT----SC-SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSS
T ss_pred             HHHHHHHHHHHHHHHHHh----cC-CCCEEEEECCccchhhHHHHHHHHhCCCccccCC
Confidence            778888777666554432    22 3679999999999999999999999999987665

>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*

Probab=96.99  E-value=0.0037  Score=53.03  Aligned_cols=61  Identities=21%  Similarity=0.091  Sum_probs=48.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC-CcEEeccC
Q psy9355          97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG-IPVGKNLT  161 (204)
Q Consensus        97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~~~~  161 (204)
                      .+++|+.+-+.|=.|-++.+.++.+    ..++++|+++|||++|+.+++.++..+. .+|...+.
T Consensus       256 ls~~Dv~ATLt~~TA~sIa~~~~~~----~~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~  317 (371)
T 3qbx_A          256 LPAADIQATLLELSARSISESLLDA----QPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDE  317 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHH----CTTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhc----cCCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHH
Confidence            4789999999888877777766543    2346899999999999999999999984 77766554

>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}

Probab=96.74  E-value=0.006  Score=51.74  Aligned_cols=57  Identities=26%  Similarity=0.295  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEec
Q psy9355          98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKN  159 (204)
Q Consensus        98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~  159 (204)
                      +++|+.+-+.|=.|-++.+.++.+    . ..++|+++|||++|+.+++.++..+ +.+|...
T Consensus       264 ~~~Dv~ATLt~~TA~sIa~~~~~~----~-~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t  321 (370)
T 3cqy_A          264 NEEDIQSTLLDLTCHSIAQDILKL----A-QEGELFVCGGGAFNAELMQRLAALLPGYRIDTT  321 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH----C-SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhc----C-CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeH
Confidence            689999999997777777766544    2 4569999999999999999999999 4455443

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=95.70  E-value=0.044  Score=45.77  Aligned_cols=125  Identities=19%  Similarity=0.171  Sum_probs=80.9

Q ss_pred             ceEEecch--hhchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcC-------
Q psy9355          24 VVYALEGS--VAVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGI-------   93 (204)
Q Consensus        24 ~~y~~~g~--~~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl-------   93 (204)
                      +.|-+.+.  -.+.|..++-+...+|+... -..++.+|...  .. .+-+|+.        .....=+|.|+       
T Consensus       147 ~~~~~lg~t~d~S~G~~fD~vA~~LGl~y~g~~~le~lA~~g--~~-~~~~~~~--------~~~~~~sfsgl~~~v~~~  215 (334)
T 3eno_A          147 GRYRVLGETLDIGIGNMIDKFAREAGIPFPGGPEIEKLAMKG--TK-LLDLPYS--------VKGMDTAFSGILTAALQY  215 (334)
T ss_dssp             SBEEEEEEBSSCCHHHHHHHHHTTTTCCSCHHHHHHTTGGGC--CS-CCCCCCC--------EETTEECCHHHHHHHHHH
T ss_pred             CEEEEeccCCCccHHHHHHHHHHHcCCCCCCHHHHHHHHhcC--CC-CCCCcee--------ccCceEchHHHHHHHHHH
Confidence            44543333  46789999999988886311 13566655432  11 1112221        00001112221       


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355          94 -TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus        94 -~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                       .....++++++++.+.++-.+.+.++...+..+  .++|.++||.+.|..+++.+.+.+   |.+|.+++.
T Consensus       216 l~~g~~~~diAasfq~~l~~~l~~~~~~a~~~~g--~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~  285 (334)
T 3eno_A          216 LKTGQAIEDISYSIQETAFAMLVEVLERALYVSG--KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDR  285 (334)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCC
Confidence             112468899999999999888888777655454  579999999999999999999988   889988775

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=95.64  E-value=0.046  Score=45.50  Aligned_cols=126  Identities=16%  Similarity=0.099  Sum_probs=82.3

Q ss_pred             cceEEecch--hhchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcC------
Q psy9355          23 PVVYALEGS--VAVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGI------   93 (204)
Q Consensus        23 p~~y~~~g~--~~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl------   93 (204)
                      .+.|-..|.  -.+.|..++-+...+++... -..++++|...  .. .+-+|+..        .+..=+|.|+      
T Consensus       140 ~~~~~~lg~t~dds~Gr~fD~vA~~LGl~~~~~~~le~lA~~g--~~-~~~~p~~i--------~~~~fsfs~l~~~v~~  208 (330)
T 2ivn_A          140 GGRYRVFGETLDIGIGNAIDVFARELGLGFPGGPKVEKLAEKG--EK-YIELPYAV--------KGMDLSFSGLLTEAIR  208 (330)
T ss_dssp             TTEEEEEEEBSSSCHHHHHHHHHHHHTCCSCHHHHHHHHHHTC--CS-CCCCCCCE--------ETTEECCHHHHHHHHH
T ss_pred             CCeEEEEEeecCchhHHHHHHHHHHhCCCCCcHHHHHHHhhcC--CC-cCCCCccc--------CCCeEehHHHHHHHHH
Confidence            355655433  23689999999999987322 13677777642  11 11123211        0000011121      


Q ss_pred             --CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355          94 --TED-TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus        94 --~~~-~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                        ... .+++++++++.+.++-.+....+...+.++  .++|.++||.+.|..+++.+.+.+   |.+|.+++.
T Consensus       209 ~~~~g~~~~~diAa~fq~~l~~~l~~~~~~~~~~~~--~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~  280 (330)
T 2ivn_A          209 KYRSGKYRVEDLAYSFQETAFAALVEVTERAVAHTE--KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPY  280 (330)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCC
Confidence              111 468999999999999888888877765443  578999999999999999999887   788888774

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=95.56  E-value=0.028  Score=47.18  Aligned_cols=63  Identities=16%  Similarity=0.069  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355          98 TRGHIVRAALEAICFQTRDILEAMKKDC-GIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus        98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~-g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      .-.++++..++.+.-.+++.++.+.... ...++.|+++||+++.+.+.+++++.+++|+.+..
T Consensus       275 ~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~  338 (377)
T 2ych_A          275 RIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN  338 (377)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence            3566788899999998988888764222 34689999999999999999999999999998863

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=95.38  E-value=0.023  Score=48.92  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355          99 RGHIVRAALEAICFQTRDILEAMKKD-----CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus        99 ~~~l~rAvlEgia~~~~~~~e~l~~~-----~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      -.++++..+|-+.-.+++.++...-.     ....++.|+++||+|+-+.+.+++++.||+||.+..
T Consensus       294 l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~  360 (419)
T 4a2a_A          294 LSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC  360 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence            45677888888888888777665310     123467899999999999999999999999998765

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=95.08  E-value=0.011  Score=49.91  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      ++++..++.+.-.+++.++... .....++.|+++||+++.|.+.+.+.+.++.++..+..
T Consensus       307 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~  366 (383)
T 1dkg_D          307 SLVEDLVNRSIELLKVALQDAG-LSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN  366 (383)
T ss_dssp             HHSHHHHHHHHHHHHHHHHTTT-CCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-CCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcC
Confidence            3455556655544444443321 11135689999999999999999999999998876554

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=94.93  E-value=0.1  Score=47.50  Aligned_cols=122  Identities=13%  Similarity=0.054  Sum_probs=80.9

Q ss_pred             hhchhHHHHHHHHhcCCC-C--CHH-----HHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcC-CCCCCHHHH
Q psy9355          32 VAVAGAAMNWLRDNVGMV-T--GVE-----EIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGI-TEDTTRGHI  102 (204)
Q Consensus        32 ~~~~G~~~~W~~~~~~~~-~--~~~-----~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl-~~~~~~~~l  102 (204)
                      +++.|..++=+...+|+. .  +|+     +||++|.....  ..+=+|+-.  .....|  .++.+..+ ....+++++
T Consensus       502 tSS~GRLFDavAalLGl~~~~~~YEGqaA~~LEalA~~~~~--~~~~lp~~i--~~~~ld--~s~l~~~ll~~g~~~~dI  575 (657)
T 3ttc_A          502 ASSCGRLFDAVAAALGCAPATLSYEGEAACALEALAASCDG--VTHPVTMPR--VDNQLD--LATFWQQWLNWQAPVNQR  575 (657)
T ss_dssp             EEEHHHHHHHHHHHHTCSCSSCSSTTHHHHHHHHHHHTCCC--CCCCCCCCE--ETTEEC--HHHHHHHHHTCCCCHHHH
T ss_pred             cCccchHHHHHHHHcCCCCccCccCchhHHHHHHHHhhCCC--ccCCceeec--cCCccc--HHHHHHHHHHcCCCHHHH
Confidence            567899999988888864 2  243     47777764321  111012210  000011  11211111 123578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEeccC
Q psy9355         103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKNLT  161 (204)
Q Consensus       103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~~~  161 (204)
                      .+++.++++-.+....+.+.+.+  .+++|.++||.++|..+++.+.+.+ |.+|..++.
T Consensus       576 AasFh~ala~~L~~~~~ra~~~~--g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~  633 (657)
T 3ttc_A          576 AWAFHDALAQGFAALMREQATMR--GITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQS  633 (657)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT--TCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCC
Confidence            99999999999998888776544  4679999999999999999999998 888888765

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=94.63  E-value=0.031  Score=50.43  Aligned_cols=62  Identities=13%  Similarity=0.091  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355          99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus        99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      -+++++.+++.+.-.+++.++...- ....++.|+++||+++.|.+.+++.+.+|+++....+
T Consensus       305 ~e~l~~~~~~~i~~~v~~~L~~a~~-~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~n  366 (605)
T 4b9q_A          305 LESLVEDLVNRSIEPLKVALQDAGL-SVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN  366 (605)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTTC-CGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC-CHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcC
Confidence            4567788888887777776654321 1235789999999999999999999999999876544

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=94.60  E-value=0.04  Score=46.62  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEeccC
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKNLT  161 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~~~  161 (204)
                      .++++.+++.+.-.+++.++.... ....++.|+++||+++.|.+.+++.+.+ +.+|..+.+
T Consensus       324 ~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~  385 (404)
T 3i33_A          324 EELNADLFRGTLEPVEKALRDAKL-DKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN  385 (404)
T ss_dssp             HHHTHHHHHHTHHHHHHHHHHHTC-CGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC-CHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcC
Confidence            445566677666666666554321 1235788999999999999999999999 888876654

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=94.54  E-value=0.042  Score=46.70  Aligned_cols=58  Identities=9%  Similarity=0.069  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK  158 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~  158 (204)
                      +++++.+++.+.-.+++.++... .....++.|+++||+++.|.+.+++.+.++.++.+
T Consensus       317 ~~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v  374 (409)
T 4gni_A          317 ETIARTVFEGFNRLVESAVKKAG-LDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRI  374 (409)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHTT-CCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-CCHHHCCEEEEECCccccHHHHHHHHHHcCCcccc
Confidence            34556666666655555554331 11134689999999999999999999999988544

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=93.56  E-value=0.29  Score=45.33  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355          96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus        96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                      ..+++++++++.++++-.+.+....+.+.+|  .++|.++||.++|..+++.+.+.+   |.++..++.
T Consensus       663 g~~~~dIAasFq~ala~~L~~~~~~a~~~~g--~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~  729 (761)
T 3vth_A          663 GFEKSYISAKFHNTVVNFTYDLANLIRKETG--INKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSK  729 (761)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCC
Confidence            3578899999999999988888877665554  578999999999999999998886   889988764

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=93.10  E-value=0.33  Score=42.90  Aligned_cols=125  Identities=17%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             ceEEecch--hhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC------
Q psy9355          24 VVYALEGS--VAVAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT------   94 (204)
Q Consensus        24 ~~y~~~g~--~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~------   94 (204)
                      +.|-..|.  -.+.|..++-+...+|+. ..-..++++|+...   ..+-+|+-        .....-+|.|+.      
T Consensus       146 ~~~~~lg~t~d~s~G~~~D~~a~~lgl~~~gg~~ie~lA~~g~---~~~~~p~~--------~~~~~~sfsgl~~~~~~~  214 (540)
T 3en9_A          146 KKYRVFGETLDIAVGNCLDQFARYVNLPHPGGPYIEELARKGK---KLVDLPYT--------VKGMDIAFSGLLTAAMRA  214 (540)
T ss_dssp             TEEEEEEEBSSSCHHHHHHHHHHHTTCCSSCHHHHHHHHHTCC---CCCCCCCC--------EETTEECCHHHHHHHHHH
T ss_pred             CceEEEeeccchHhHHHHHHHHHHcCCCCCCHHHHHHHHHcCC---ccCcCCCC--------CCCcceecHHHHHHHHHH
Confidence            34443333  356899999999998873 12257888886432   11112321        111122333332      


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355          95 --EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT  161 (204)
Q Consensus        95 --~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~  161 (204)
                        ...+++++++++-+.++-.+.+..+...+.++  .++|.++||.+.|..+++.+.+.+   |.++..|+.
T Consensus       215 ~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~--~~~~~~~GGVa~N~~l~~~l~~~~~~~~~~~~~p~~  284 (540)
T 3en9_A          215 YDAGERLEDICYSLQEYAFSMLTEITERALAHTN--KGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPK  284 (540)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCCH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEeCcHHhHHHHHHHHHHHHHhcCCEEEeCCC
Confidence              12468899999999988888777766655454  579999999999999999998876   678888764

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=92.10  E-value=0.15  Score=44.72  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      .++++.+++.+.-.+++.++... .....++.|+++||+++.|.+.+.+.+.+++++..+.+
T Consensus       275 e~l~~~~~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~  335 (509)
T 2v7y_A          275 EELSAHLVERTMGPVRQALQDAG-LTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN  335 (509)
T ss_dssp             HHHTHHHHHTTHHHHHHHHHHHT-CCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-CChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCC
Confidence            34556666666555555554432 11135789999999999999999999999988766554

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=91.98  E-value=0.062  Score=44.45  Aligned_cols=71  Identities=18%  Similarity=0.164  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-ceEEEecCccccHHHHHHHHhhhCCcEEeccCC---CcccccccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQ-L-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYIT  171 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~-~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~~  171 (204)
                      ++++..++.+.-.+++.++........+ + +.|+++||+++.+.+.+.+.+.++.+|.++.+.   .+.|+.++.
T Consensus       248 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a  323 (344)
T 1jce_A          248 EALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVL  323 (344)
T ss_dssp             HHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHH
Confidence            3445555555554544443221000001 2 589999999999999999999999999886552   344555543

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=91.26  E-value=0.23  Score=45.41  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      .++++.+++.+.-.++..++... .....++.|+++||+++.|.+.+++.+.+|+++....+
T Consensus       307 e~l~~~l~~~i~~~i~~~L~~a~-l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~n  367 (675)
T 3d2f_A          307 EELVKPLLERVTEPVTKALAQAK-LSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLN  367 (675)
T ss_dssp             HHHTHHHHTTTTHHHHHHHHHHT-CCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCC
Confidence            34556666666655555554431 11125789999999999999999999999999876554

>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*

Probab=89.24  E-value=1  Score=40.27  Aligned_cols=61  Identities=13%  Similarity=0.056  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCC-cEEecc
Q psy9355          98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI-PVGKNL  160 (204)
Q Consensus        98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~-pv~~~~  160 (204)
                      ...++++++-+.++-.+.+....+.+.+|  .++|.++||.+.|..+++.+.+..+. .+.++.
T Consensus       279 ~~~dIAasfQ~~l~~~L~~~~~~a~~~tg--~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp  340 (576)
T 3ven_A          279 EYRDLAATAQAALERAVFGLADSVLARTG--ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPP  340 (576)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCC
Confidence            47899999998888888888777666554  68999999999999999999887775 666654

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=89.05  E-value=0.37  Score=42.86  Aligned_cols=60  Identities=13%  Similarity=0.113  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC-CcEEeccC
Q psy9355         101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG-IPVGKNLT  161 (204)
Q Consensus       101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~~~~  161 (204)
                      +++..+++.+.-.+++.++... .....++.|+++||+++.|.+.+.+.+.++ +++..+.+
T Consensus       304 ~l~~~~~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~n  364 (554)
T 1yuw_A          304 ELNADLFRGTLDPVEKALRDAK-LDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN  364 (554)
T ss_dssp             HHTHHHHHHTTHHHHHHHHHTT-CCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-CChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCC
Confidence            4555566655555555444321 111357899999999999999999999996 77765544

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=88.57  E-value=0.92  Score=42.09  Aligned_cols=62  Identities=11%  Similarity=0.159  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEecc
Q psy9355          97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNL  160 (204)
Q Consensus        97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~  160 (204)
                      .++.++++++-+.++-.+.+.+..+.+.+  ..++|.++||.+.|.++++.+.+.+   |.+|.++.
T Consensus       676 ~~~~dIAasfQ~al~~~L~~~~~~a~~~t--g~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~  740 (772)
T 4g9i_A          676 ASPADIAYSAHLALARAFAHTAVERAREF--GVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTT  740 (772)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccC
Confidence            46788888888888888777777776644  4689999999999999999998875   56777654

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=84.90  E-value=0.2  Score=45.09  Aligned_cols=56  Identities=13%  Similarity=0.069  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355         105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus       105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      .+++.+.-.+++.++... .....++.|+++||+++.|.+.+++.+.+|+++....+
T Consensus       311 ~~~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~n  366 (605)
T 2kho_A          311 DLVNRSIEPLKVALQDAG-LSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN  366 (605)
T ss_dssp             STTGGGTSHHHHHHHTTT-CCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSC
T ss_pred             HHHHHHHHHHHHHHHHcC-CChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCC
Confidence            344444444444443321 11235789999999999999999999999998766544

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=82.27  E-value=1.9  Score=35.11  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=26.4

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhCC---cEEeccC
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCGI---PVGKNLT  161 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~---pv~~~~~  161 (204)
                      .++.|+++||+|+-  +.+.+.+.++.   ++.++..
T Consensus       272 ~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~  306 (320)
T 2zgy_A          272 GYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNN  306 (320)
T ss_dssp             CCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSC
T ss_pred             CCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCC
Confidence            56899999999975  88999999998   5766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1r59o2	235	c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus	9e-29
d2p3ra2	247	c.55.1.4 (A:254-500) Glycerol kinase {Escherichia	5e-28
d1huxa_	259	c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp	3e-05
d1r59o1	252	c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c	1e-04

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score =  105 bits (262), Expect = 9e-29
 Identities = 69/153 (45%), Positives = 97/153 (63%), Gaps = 1/153 (0%)

Query: 4   KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
              S   LLTT+ + +  +   YALEGS+ VAG+A+ WLRD + M+    + E LA   +
Sbjct: 24  PQLSDNDLLTTIGYGINGKVY-YALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAK 82

Query: 64  HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
              +VY VPAF+GL APYW  +ARG + G+T  TT+   VRA L+A+ +Q++D+++ MKK
Sbjct: 83  GDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKK 142

Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
           D GI +  L+VDGG   N  LMQ QAD+  I V
Sbjct: 143 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDV 175

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 14/144 (9%), Positives = 38/144 (26%), Gaps = 20/144 (13%)

Query: 16  AFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLA---ESHRHTGDVYFVP 72
              + +  +          AG           +   V ++  L               V 
Sbjct: 109 VIHVENGTMTNFQMNDKCAAGTGRFLDVMANILEVKVSDLAELGAKSTKRVAISSTCTVF 168

Query: 73  AFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKL 132
           A S             +I  +++ T +  I+     ++  +   +   +          +
Sbjct: 169 AESE------------VISQLSKGTDKIDIIAGIHRSVASRVIGLANRVGIVK-----DV 211

Query: 133 QVDGGMTANKHLMQTQADLCGIPV 156
            + GG+  N  +     +  G+ +
Sbjct: 212 VMTGGVAQNYGVRGALEEGLGVEI 235

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 16/127 (12%)

Query: 91  CGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIK----LQVDGGMTANKHLMQ 146
             +  D T G  +  A+     Q+  I + +K D   ++I     L +D   +A K    
Sbjct: 82  TTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWL 141

Query: 147 -----------TQADLCGIPVGKNLTGGKDGGK-YITDVSNASRTMLMNIETLEWDPMLC 194
                         +L    +   L      G+ ++TD SNASRTML NI  LEWD  + 
Sbjct: 142 LDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQEIL 201

Query: 195 GVWEINM 201
            +  I  
Sbjct: 202 DLLNIPS 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1r59o2	235	Glycerol kinase {Enterococcus casseliflavus [TaxId	100.0
d2p3ra2	247	Glycerol kinase {Escherichia coli [TaxId: 562]}	100.0
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	97.65
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	96.42
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	94.84
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	94.41
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	94.18
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	93.72
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	92.0
d1saza2	203	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	84.21

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=100.00  E-value=2.2e-46  Score=302.15  Aligned_cols=195  Identities=37%  Similarity=0.596  Sum_probs=167.1

Q ss_pred             cCCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCC
Q psy9355           4 KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQ   83 (204)
Q Consensus         4 ~~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~   83 (204)
                      ++.+.+|+++++||.++. +..|.++|.++++|.+++|+++.+......++.++.+...+++++++|+|||.|+|+|+||
T Consensus        24 ~~~~~~gll~t~~~~~~~-~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~g~~flP~~~G~~~P~~~  102 (235)
T d1r59o2          24 PQLSDNDLLTTIGYGING-KVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWD  102 (235)
T ss_dssp             CCCCSSSCEEEECCCSSS-CCCEEEECCCSCSSHHHHHTTTTSCSSSSGGGGTTTTSSSSSCSSCEEECCTTCCCTTTCC
T ss_pred             cccCCCCcEEEEEEEeCC-ccEEEeHHHHHHHHHHHHHHHhhhhcccchhhhcccccccCCCCcceeeehhhhccccccC
Confidence            456678999999999874 3579999999999999999999887644444444444444588999999999999999999


Q ss_pred             CCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355          84 PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-  162 (204)
Q Consensus        84 ~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-  162 (204)
                      +++||.|+||+.+|++.||+||++|||||++|+++|.|++..|.++++|+++||+++|++|+|++||++|+||.++... 
T Consensus       103 ~~arg~~~Gl~~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~e  182 (235)
T d1r59o2         103 SEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLE  182 (235)
T ss_dssp             SSCCCEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCCC
T ss_pred             CCcceeEeecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEecCcchhCHHHHhhhhhccceeeeeccccc
Confidence            9999999999999999999999999999999999999988779999999999999999999999999999999998873 


Q ss_pred             -C--------cccccccCCHHHHHHHhhccCeEeecCcch---hhhhhcc
Q psy9355         163 -G--------KDGGKYITDVSNASRTMLMNIETLEWDPML---CGVWEIN  200 (204)
Q Consensus       163 -~--------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~---~~~y~~~  200 (204)
                       +        +++.|.++|++++ +++++..++|+|+.+.   .+.|++.
T Consensus       183 ~~alGaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~~~~~~~Y~~w  231 (235)
T d1r59o2         183 TTALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFTPEMPAEERDNLYEGW  231 (235)
T ss_dssp             TTTHHHHHHHHHHHTSSSSSTTS-GGGCCEEEEECCCSTTSSHHHHHTTT
T ss_pred             hHHHHHHHHHHHHcCCCCCHHHH-HhccCCCcEEcCCCCHHHHHHHHHHH
Confidence             2        2467888999884 7788889999998653   3344443

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00012  Score=55.79  Aligned_cols=138  Identities=14%  Similarity=0.000  Sum_probs=94.0

Q ss_pred             cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCC--CCCCCcEEEEcCC------
Q psy9355          23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPY--WQPDARGIICGIT------   94 (204)
Q Consensus        23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~--~~~~~~g~~~Gl~------   94 (204)
                      ++.|-..|++..+|.++.=+.+.+....++++++++|++-....--+..|...|....+  -..+...+.+|-.      
T Consensus        46 ~~~~~~iggT~~gGgtf~gla~lLlg~~~~~eI~klA~~G~~~~~dl~~~di~~~~~s~sgL~t~~~a~~fgk~~~~~~~  125 (212)
T d2i7na2          46 KDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKR  125 (212)
T ss_dssp             TTEEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSEEHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHH
T ss_pred             CCceEEecCCcccHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccCccCCCcCCCCCCcccCCHHHHHHHhhhhhhcccc
Confidence            57888888888999999988887744578999999998753111124456554432221  2344555555532      


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHH-HHHHhh------hCCcEEeccCC
Q psy9355          95 EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLM-QTQADL------CGIPVGKNLTG  162 (204)
Q Consensus        95 ~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~-Qi~Adv------~g~pv~~~~~~  162 (204)
                      ...+++|+++++.+.|+..+-+......+..  .+++|+++||.+.|..++ ++++.+      -+..+..++..
T Consensus       126 ~~~~~~DiaaS~q~~v~~~l~~~a~~aa~~~--~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~  198 (212)
T d2i7na2         126 DSISKEDLARATLVTITNNIGSIARMCALNE--NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHE  198 (212)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTT
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCCh
Confidence            3457899999999999999988876665544  478999999988765444 444432      26788888764

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.42  E-value=0.0038  Score=46.09  Aligned_cols=62  Identities=13%  Similarity=0.134  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355          99 RGHIVRAALEAICFQTRDILEAMKKDCG-----IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL  160 (204)
Q Consensus        99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g-----~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~  160 (204)
                      -.+++++.++-+.-.+++.++.+.....     ..+..|+++||+|+-+-+.++++++||+||++..
T Consensus        95 l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri~~  161 (191)
T d1e4ft2          95 LSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC  161 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhhHHHHHHHHHCCCeEEeC
Confidence            3457788888888777777777654321     1234699999999999999999999999998643

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.0067  Score=43.96  Aligned_cols=71  Identities=20%  Similarity=0.169  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355         100 GHIVRAALEAICFQTRDILEAMKKDC--GIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI  170 (204)
Q Consensus       100 ~~l~rAvlEgia~~~~~~~e~l~~~~--g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~  170 (204)
                      .++...+++-+...+...++......  ....+.|+++||+|+-|...+++++.+|+|+.+..+.   -|.|++.+
T Consensus       107 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~  182 (196)
T d1jcea2         107 REALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMV  182 (196)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHH
Confidence            34444555555444444444332210  0123569999999999999999999999999987652   24555544

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=94.41  E-value=0.024  Score=41.71  Aligned_cols=63  Identities=19%  Similarity=0.336  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355          97 TTRGHIVRAALEAICFQTRDIL-EAMKKDCGI---QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT  161 (204)
Q Consensus        97 ~~~~~l~rAvlEgia~~~~~~~-e~l~~~~g~---~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~  161 (204)
                      -+++++-. +++-+.-.+...+ +.|++ .+.   .++.|.++||+++.|.+.+++.+.++.++.+..+
T Consensus       115 itr~~~~~-~~~~~~~~~~~~i~~~l~~-a~~~~~~Id~v~lvGG~sr~p~l~~~i~~~f~~~~~~~~~  181 (198)
T d1dkgd2         115 VTRAKLES-LVEDLVNRSIELLKVALQD-AGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN  181 (198)
T ss_dssp             EEHHHHHH-HSHHHHHHHHHHHHHHHHT-TTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSC
T ss_pred             EcHHHHHH-HHHHHHHHHHHHHHHHHHH-hCCChhHCcEEEEEcCccCCHHHHHHHHHHHCCCCCCCCC
Confidence            35666543 3333433333333 33332 343   4689999999999999999999999988765444

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.18  E-value=0.064  Score=39.88  Aligned_cols=61  Identities=10%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355          97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG  162 (204)
Q Consensus        97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~  162 (204)
                      ...++++...++.+.-....   .+..  -..++.|++.||.++|+.+.+.+.+.++.+|.+|+..
T Consensus       181 ~~~~~i~~~~~~~~~~~~~~---~~~~--~~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~  241 (259)
T d1huxa_         181 TDKIDIIAGIHRSVASRVIG---LANR--VGIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLA  241 (259)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH---HHHT--TCCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGG
T ss_pred             CcHHHHHHHHHHHHHHHHHH---HHHh--ccCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCc
Confidence            45666666666665544433   3433  1356789999999999999999999999999998874

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.72  E-value=0.044  Score=39.88  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=28.1

Q ss_pred             CcceEEEecCccccHHHHHHHHhhhC-CcEEecc
Q psy9355         128 QLIKLQVDGGMTANKHLMQTQADLCG-IPVGKNL  160 (204)
Q Consensus       128 ~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~~~  160 (204)
                      +++.|.++||+++.|...+.+++.++ .++..+.
T Consensus       142 ~i~~V~lvGG~sr~p~v~~~i~~~f~~~~i~~~~  175 (193)
T d1bupa2         142 QIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSI  175 (193)
T ss_dssp             GCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSS
T ss_pred             HCCEEEEECCccccHHHHHHHHHHcCCCCCCCCC
Confidence            47799999999999999999999996 6665543

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.00  E-value=0.33  Score=35.66  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhh---CCcEEeccCC
Q psy9355          96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLC---GIPVGKNLTG  162 (204)
Q Consensus        96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~---g~pv~~~~~~  162 (204)
                      .....++.++++|.++..+...+..+...  ..+++|++.||+. .++.+.+.+.+.+   +..+..++..
T Consensus       186 ~~~~~~~a~~~~~~~~~~l~~~~~~~~~~--~~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~  254 (267)
T d2ewsa1         186 DFTPSNKLAAVIGVVGEVVTTMAITVARE--FKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENG  254 (267)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTG
T ss_pred             hcchhhhHHHHHHHHHHHHHHHHHHHHhh--cCCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCc
Confidence            35788899999999998888877777654  3567898888875 5899989888876   4566666653

>d1saza2 c.55.1.2 (A:173-375) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=84.21  E-value=1.6  Score=31.92  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHhhhCC--cEEecc
Q psy9355         104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQADLCGI--PVGKNL  160 (204)
Q Consensus       104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Adv~g~--pv~~~~  160 (204)
                      +-++|..+|+++..+-.+...++-+++-|+.+||... ++.+++.+.+-+..  ||.+.+
T Consensus        99 ~lA~d~~~y~i~K~Iga~~a~L~G~vDaIvfTgGIgen~~~vr~~I~~~l~~lgpv~v~P  158 (203)
T d1saza2          99 KRVYRAMAYQIAKWIGKMAAVLKGEVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFP  158 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHHhccccccEEEec
Confidence            4588999999999999887767657899999999995 56677766666653  676544