Psyllid ID: psy9378

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
YPYRETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPLTQDHFIKENQPVRNDSWDELPHMDDYEDIIPFSYFAYLNCYPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSLFFCVLWLCGQVY
ccccccEEEEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEEccHHHHHHHHccccccccHHHcccccccccccccccccccccccccccccEEcccccccccccccccccEEccccccHHHHcHHHHcccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHcccccccEEccccccHHHHHHHHHcccccEEccccHHHHHHHHHccccEEEcccHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHccccEEEEEEEEEEEEcccccccccEEEEEEccccccccHHHHccccEEEEEEEEccccccccccccEEEccccccccccccHHccccccccc
cccccccccEEEEccccccHHHHHccccccccccccEEEEcccccEEEEccccccccccccEEEEEcHHHHHHHHHHccccHccccccccccccccccccccHHHHHHccccEHHEEEcccccccEEEEcHHHHEEEEccccccEEHcccHHHccccccccccccccccccccccccccccccccEEccccccHHHHHHHcHHHccccccccEEEEcHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHcccccccccHHHHHHHHHHHccccEEEEccHHHHHHHHHHccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccEEEEcccccccEEEccccccccccccccccEEEEccccccHHHHHHHHccccc
ypyretlvpssvwgptcdgldkvnddillpempvgswliyrdmgaytlpvastfngfpipkVHAVIEEHIWLMLkdrlpltqdhfikenqpvrndswdelphmddyediipfsyfaylncypnvnmklqnpedqiyvldrgnDAVHVMKSIILsgvpvynypdnirvlpefqptisvwkripkslmvyprtddmtqvpvynypdnvgmkedafyVLDVGEIVRKHEdwklklprvdpyyavkcndSQMVLEVLAALgtgfdcaskpishIRYAAeygidtmtfDNEIELqkvkqfhptAQLVIRIRCDAEVAQCQlgmkfgcdpiseapRLLRLAKSLDLDVVGVSfhvgsgcgdppvfgrAIYSARQIFDLGNSLGFSMRVLdlgggypgytgysmNRIAEIINVAldeyfpveegvsiiaepgryyVASAFTLATLIHSkrdilganssvpthtmyyindgvygsfnciiydhavctpipfnvmddsqvslrsplflQESFLLSCLSLFFCVLWLCGQVY
ypyretlvpssvwgptcdgLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPLTQDHFIkenqpvrndswdELPHMDDYEDIIPFSYFAYLNCYPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNYPDNIRVLpefqptisvwkriPKSLmvyprtddmtqVPVYNYPDNVGMKEDAFYVLDVGEIVRkhedwklklprvDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHvgsgcgdppVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSLFFCVLWLCGQVY
YPYRETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPLTQDHFIKENQPVRNDSWDELPHMDDYEDIIPFSYFAYLNCYPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPlflqesfllsclslffcvlwlcGQVY
*******VPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPLTQDHFIKENQPVRNDSWDELPHMDDYEDIIPFSYFAYLNCYPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSLFFCVLWLCGQ**
*****TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKD********************WDELPHMDDYEDIIPFSYFAYLNCYPNVNMK*********VLDRGNDAVHVMKSI********************************SLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMD****SLRSPLFLQESFLLSCLSLFFCVLWLCGQVY
********PSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPLTQDHFIKENQPVRNDSWDELPHMDDYEDIIPFSYFAYLNCYPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSLFFCVLWLCGQVY
****ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPLTQD*****NQPVRNDSWDELPHMDDYEDIIPFSYFAYLNCYPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSLFFCVLWLCGQVY
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YPYRETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLPLTQDHFIKENQPVRNDSWDELPHMDDYEDIIPFSYFAYLNCYPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSLFFCVLWLCGQVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
P27117461 Ornithine decarboxylase O yes N/A 0.519 0.587 0.506 2e-79
P11926461 Ornithine decarboxylase O yes N/A 0.519 0.587 0.509 4e-79
P09057461 Ornithine decarboxylase O yes N/A 0.509 0.577 0.508 6e-79
P27119461 Ornithine decarboxylase O N/A N/A 0.509 0.577 0.511 1e-78
P00860461 Ornithine decarboxylase O yes N/A 0.509 0.577 0.508 2e-78
P07805423 Ornithine decarboxylase O N/A N/A 0.519 0.640 0.503 3e-78
P27118450 Ornithine decarboxylase ( yes N/A 0.519 0.602 0.493 9e-77
P27120460 Ornithine decarboxylase 1 N/A N/A 0.519 0.589 0.478 1e-76
Q9I8S4456 Ornithine decarboxylase 2 N/A N/A 0.517 0.592 0.475 6e-74
P14019455 Ornithine decarboxylase O yes N/A 0.513 0.589 0.483 3e-70
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  297 bits (760), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/304 (50%), Positives = 198/304 (65%), Gaps = 33/304 (10%)

Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKP--- 266
           +DAFYV D+G+I++KH  W   LPRV P+YAVKCNDS+ +++ LAA+GTGFDCASK    
Sbjct: 37  KDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQ 96

Query: 267 --------------------ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
                               +S I+YAA  G+  MTFD+E+EL KV + HP A+LV+RI 
Sbjct: 97  LVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIA 156

Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
            D   A C+L +KFG   +  +  LL  AK LD+DV+GVSFHVGSGC DP  F +AI  A
Sbjct: 157 TDDSKAVCRLSVKFGA-TLKTSRLLLERAKELDIDVIGVSFHVGSGCTDPETFVQAISDA 215

Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMN--RIAEIINVALDEYFPVEEGVSIIAEP 424
           R +FD+G  +GF+M +LD+GGG+PG     +    I  +IN ALD+YFP + GV IIAEP
Sbjct: 216 RCVFDMGAEVGFNMYLLDIGGGFPGSEDVKLKFEEITSVINPALDKYFPSDSGVRIIAEP 275

Query: 425 GRYYVASAFTLATLIHSKRDILGANS-------SVPTHTMYYINDGVYGSFNCIIYDHAV 477
           GRYYVASAFTLA  I +K+ +L   +       S     MYY+NDGVYGSFNCI+YDHA 
Sbjct: 276 GRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEESTDRTFMYYVNDGVYGSFNCILYDHAH 335

Query: 478 CTPI 481
             P+
Sbjct: 336 VKPL 339

Bos taurus (taxid: 9913)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2 Back     alignment and function description
>sp|P09057|DCOR_RAT Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1 Back     alignment and function description
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1 Back     alignment and function description
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=2 Back     alignment and function description
>sp|P07805|DCOR_TRYBB Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2 Back     alignment and function description
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1 Back     alignment and function description
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc1-a PE=2 SV=1 Back     alignment and function description
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc1-b PE=2 SV=1 Back     alignment and function description
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase OS=Cricetulus griseus GN=ODC1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
345493669478 PREDICTED: ornithine decarboxylase-like 0.532 0.581 0.641 1e-106
383860578472 PREDICTED: ornithine decarboxylase-like 0.528 0.584 0.635 1e-105
340728813470 PREDICTED: ornithine decarboxylase-like 0.528 0.587 0.629 1e-105
350402809470 PREDICTED: ornithine decarboxylase-like 0.528 0.587 0.629 1e-105
110748906470 PREDICTED: ornithine decarboxylase-like 0.528 0.587 0.615 1e-103
332020341471 Ornithine decarboxylase [Acromyrmex echi 0.528 0.585 0.631 1e-103
380013233470 PREDICTED: LOW QUALITY PROTEIN: ornithin 0.528 0.587 0.609 1e-103
322790208479 hypothetical protein SINV_04085 [Solenop 0.526 0.574 0.62 1e-101
270010871456 hypothetical protein TcasGA2_TC015912 [T 0.540 0.618 0.586 1e-100
189239038433 PREDICTED: similar to ornithine decarbox 0.540 0.651 0.586 2e-99
>gi|345493669|ref|XP_001604390.2| PREDICTED: ornithine decarboxylase-like isoform 1 [Nasonia vitripennis] gi|345493671|ref|XP_003427124.1| PREDICTED: ornithine decarboxylase-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/304 (64%), Positives = 229/304 (75%), Gaps = 26/304 (8%)

Query: 205 NVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS 264
           N G++E+AFYVLDVG+IV+KH+ WK KLPRVDP+YAVKCNDS  VLEVLA+LG GFDCAS
Sbjct: 28  NSGLQEEAFYVLDVGDIVQKHQIWKEKLPRVDPFYAVKCNDSLTVLEVLASLGVGFDCAS 87

Query: 265 K-----------------------PISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQL 301
           K                       P SHIR+AA  G+D MT DNE EL K+K+  PTA++
Sbjct: 88  KNEINKVLDIGVDSSRIIFANPAKPASHIRHAAAVGVDLMTVDNESELHKIKKLFPTAKV 147

Query: 302 VIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR 361
           V+RIRCD+EVAQCQLGMKFGCDP  EAP LLRLA+ LD+DVVG+SFHVGSGC DPPVF R
Sbjct: 148 VLRIRCDSEVAQCQLGMKFGCDPTFEAPSLLRLARLLDIDVVGISFHVGSGCQDPPVFNR 207

Query: 362 AIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSII 421
           AI  A+ +FDL   +GF   +LDLGGGYPG  G S+ +IA++IN ALDEYFP ++ V II
Sbjct: 208 AICHAKNLFDLAVDIGFKPYLLDLGGGYPGNKGSSIEKIADVINHALDEYFPTDD-VHII 266

Query: 422 AEPGRYYVASAFTLATLIHSKRDIL--GANSSVPTHTMYYINDGVYGSFNCIIYDHAVCT 479
           AEPGR+YVASAFTLAT IHSKR +   G +    THTMYYINDGVYGSFNC++YDH   T
Sbjct: 267 AEPGRFYVASAFTLATAIHSKRSVRADGNSPGNVTHTMYYINDGVYGSFNCLLYDHQHVT 326

Query: 480 PIPF 483
           PIP 
Sbjct: 327 PIPL 330

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383860578|ref|XP_003705766.1| PREDICTED: ornithine decarboxylase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340728813|ref|XP_003402708.1| PREDICTED: ornithine decarboxylase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350402809|ref|XP_003486611.1| PREDICTED: ornithine decarboxylase-like isoform 1 [Bombus impatiens] gi|350402812|ref|XP_003486612.1| PREDICTED: ornithine decarboxylase-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|110748906|ref|XP_393529.3| PREDICTED: ornithine decarboxylase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|332020341|gb|EGI60763.1| Ornithine decarboxylase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380013233|ref|XP_003690669.1| PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase-like [Apis florea] Back     alignment and taxonomy information
>gi|322790208|gb|EFZ15207.1| hypothetical protein SINV_04085 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|270010871|gb|EFA07319.1| hypothetical protein TcasGA2_TC015912 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189239038|ref|XP_968571.2| PREDICTED: similar to ornithine decarboxylase [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
UNIPROTKB|P27117461 ODC1 "Ornithine decarboxylase" 0.413 0.468 0.530 5.2e-77
UNIPROTKB|I3LTY3449 ODC1 "Uncharacterized protein" 0.413 0.481 0.530 5.2e-77
UNIPROTKB|P11926461 ODC1 "Ornithine decarboxylase" 0.411 0.466 0.541 2.2e-76
RGD|3227461 Odc1 "ornithine decarboxylase 0.404 0.457 0.533 2.9e-76
UNIPROTKB|E2R8D9461 ODC1 "Uncharacterized protein" 0.411 0.466 0.519 5.9e-76
MGI|MGI:97402461 Odc1 "ornithine decarboxylase, 0.404 0.457 0.529 7.5e-76
FB|FBgn0013307394 Odc1 "Ornithine decarboxylase 0.404 0.535 0.488 2.3e-68
POMBASE|SPAC144.04c432 spe1 "ornithine decarboxylase 0.383 0.462 0.488 1.8e-62
UNIPROTKB|Q96A70460 ADC "Arginine decarboxylase" [ 0.419 0.476 0.454 6.1e-62
UNIPROTKB|G4MRJ1459 MGG_02441 "Ornithine decarboxy 0.396 0.450 0.435 9.9e-62
UNIPROTKB|P27117 ODC1 "Ornithine decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 586 (211.3 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
 Identities = 120/226 (53%), Positives = 154/226 (68%)

Query:   265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDP 324
             K +S I+YAA  G+  MTFD+E+EL KV + HP A+LV+RI  D   A C+L +KFG   
Sbjct:   115 KQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGAT- 173

Query:   325 ISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLD 384
             +  +  LL  AK LD+DV+GVSFHVGSGC DP  F +AI  AR +FD+G  +GF+M +LD
Sbjct:   174 LKTSRLLLERAKELDIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLD 233

Query:   385 LGGGYPGYTGYSMN--RIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSK 442
             +GGG+PG     +    I  +IN ALD+YFP + GV IIAEPGRYYVASAFTLA  I +K
Sbjct:   234 IGGGFPGSEDVKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAK 293

Query:   443 RDIL----GANS---SVPTHTMYYINDGVYGSFNCIIYDHAVCTPI 481
             + +L    G++    S     MYY+NDGVYGSFNCI+YDHA   P+
Sbjct:   294 KLVLKEQTGSDDEEESTDRTFMYYVNDGVYGSFNCILYDHAHVKPL 339
GO:0033387 "putrescine biosynthetic process from ornithine" evidence=IEA
GO:0004586 "ornithine decarboxylase activity" evidence=IEA
UNIPROTKB|I3LTY3 ODC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P11926 ODC1 "Ornithine decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|3227 Odc1 "ornithine decarboxylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8D9 ODC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:97402 Odc1 "ornithine decarboxylase, structural 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0013307 Odc1 "Ornithine decarboxylase 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAC144.04c spe1 "ornithine decarboxylase Spe1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q96A70 ADC "Arginine decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G4MRJ1 MGG_02441 "Ornithine decarboxylase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P11926DCOR_HUMAN4, ., 1, ., 1, ., 1, 70.50980.51910.5878yesN/A
P00860DCOR_MOUSE4, ., 1, ., 1, ., 1, 70.50830.50950.5770yesN/A
P09057DCOR_RAT4, ., 1, ., 1, ., 1, 70.50830.50950.5770yesN/A
P27117DCOR_BOVIN4, ., 1, ., 1, ., 1, 70.50650.51910.5878yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.10.691
4th Layer4.1.1.17LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 1e-136
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 1e-77
pfam02784245 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent deca 2e-74
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 4e-63
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 8e-46
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 3e-32
cd06828373 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-pho 5e-30
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 8e-23
cd06839382 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5 1e-19
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 1e-16
TIGR01048414 TIGR01048, lysA, diaminopimelate decarboxylase 2e-16
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 2e-13
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 2e-13
PRK08961861 PRK08961, PRK08961, bifunctional aspartate kinase/ 3e-12
TIGR03099398 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decar 4e-11
cd06842423 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5 6e-11
cd06841379 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5 4e-10
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 9e-09
cd06843377 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5 1e-07
cd06840368 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyrido 1e-07
PLN02537410 PLN02537, PLN02537, diaminopimelate decarboxylase 2e-07
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 7e-04
cd06836379 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri 9e-04
cd06830409 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosp 0.002
cd06836379 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri 0.003
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information 
 Score =  399 bits (1028), Expect = e-136
 Identities = 153/301 (50%), Positives = 184/301 (61%), Gaps = 32/301 (10%)

Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----- 264
           E  F V+D+G++VRK+  WK  LPRV P+YAVKCN    VL  LAALG GFDCAS     
Sbjct: 1   ETPFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIE 60

Query: 265 ------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
                             K IS IRYAAE G+   TFD+E EL+K+ +  P A+L++RI 
Sbjct: 61  LVLGLGVSPERIIFANPCKSISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIA 120

Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
            D   A C L  KFG DP  EA  LLR AK L L+VVGVSFHVGS C DP  +  AI  A
Sbjct: 121 TDDSGALCPLSRKFGADP-EEARELLRRAKELGLNVVGVSFHVGSQCTDPSAYVDAIADA 179

Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPG-YTG--YSMNRIAEIINVALDEYFPVEEGVSIIAE 423
           R++FD    LGF +++LD+GGG+PG Y G   S   IA +IN ALDEYFP +EGV IIAE
Sbjct: 180 REVFDEAAELGFKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFP-DEGVRIIAE 238

Query: 424 PGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPF 483
           PGRY VASAFTLA  + +KR     +        YY+NDGVYGSFN I++DH    P   
Sbjct: 239 PGRYLVASAFTLAVNVIAKRKRGDDD----RERWYYLNDGVYGSFNEILFDHIRYPPRVL 294

Query: 484 N 484
            
Sbjct: 295 K 295

This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein. Length = 362
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>gnl|CDD|143506 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|233248 TIGR01048, lysA, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase A system-associated Back     alignment and domain information
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|143510 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>gnl|CDD|143507 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
KOG0622|consensus448 100.0
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 100.0
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 100.0
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 100.0
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 100.0
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 100.0
PLN02537410 diaminopimelate decarboxylase 100.0
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 100.0
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 100.0
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 100.0
PRK11165420 diaminopimelate decarboxylase; Provisional 100.0
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 100.0
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 100.0
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 100.0
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 100.0
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 100.0
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 100.0
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 100.0
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 100.0
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 100.0
PRK05354 634 arginine decarboxylase; Provisional 100.0
TIGR01273 624 speA arginine decarboxylase, biosynthetic. A disti 100.0
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 100.0
PLN02439 559 arginine decarboxylase 100.0
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 99.92
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.92
cd06819358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.91
cd00430367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 99.9
cd06812374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.89
cd06818382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.85
cd06820353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.83
cd06821361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.82
KOG0622|consensus448 99.79
cd06811382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.79
cd06813388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.79
PRK00053363 alr alanine racemase; Reviewed 99.76
TIGR00492367 alr alanine racemase. This enzyme interconverts L- 99.75
PRK13340406 alanine racemase; Reviewed 99.72
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.7
cd06826365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 99.69
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 99.65
cd07376345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.62
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.62
cd06827354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 99.6
cd06825368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 99.54
cd06817389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.48
PLN02537410 diaminopimelate decarboxylase 99.48
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 99.48
cd06814379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.47
cd06815353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.44
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.43
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 99.41
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 99.41
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 99.4
COG0787360 Alr Alanine racemase [Cell envelope biogenesis, ou 99.39
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 99.37
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 99.37
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 99.35
PRK11165420 diaminopimelate decarboxylase; Provisional 99.35
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 99.35
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 99.34
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 99.34
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 99.33
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 99.33
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 99.33
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 99.24
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 99.2
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 99.19
PRK03646355 dadX alanine racemase; Reviewed 99.19
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.18
PRK11930822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.17
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 99.16
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 99.02
COG3616368 Predicted amino acid aldolase or racemase [Amino a 98.88
COG3457353 Predicted amino acid racemase [Amino acid transpor 98.76
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 97.84
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 97.15
PF07745332 Glyco_hydro_53: Glycosyl hydrolase family 53; Inte 92.08
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 90.94
KOG3157|consensus244 90.17
PRK05354634 arginine decarboxylase; Provisional 89.0
PRK01060281 endonuclease IV; Provisional 88.88
COG3867403 Arabinogalactan endo-1,4-beta-galactosidase [Carbo 87.91
PRK02308303 uvsE putative UV damage endonuclease; Provisional 85.23
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 84.19
PRK13210284 putative L-xylulose 5-phosphate 3-epimerase; Revie 82.63
PRK13209283 L-xylulose 5-phosphate 3-epimerase; Reviewed 81.71
PRK12677 384 xylose isomerase; Provisional 81.0
PRK09856275 fructoselysine 3-epimerase; Provisional 80.99
TIGR03234254 OH-pyruv-isom hydroxypyruvate isomerase. This enzy 80.42
>KOG0622|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.5e-65  Score=519.22  Aligned_cols=311  Identities=49%  Similarity=0.845  Sum_probs=292.5

Q ss_pred             CCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CC
Q psy9378         210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KP  266 (522)
Q Consensus       210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~  266 (522)
                      ..||||+|+..|.+++++|++.+|+++++||||||++|.|+++|+++|+||+|||                       |+
T Consensus        55 ~~aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~riIyanpcK~  134 (448)
T KOG0622|consen   55 KQAFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERIIYANPCKQ  134 (448)
T ss_pred             cCceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHHHHhcCCChHHeEecCCCcc
Confidence            6899999999999999999999999999999999999999999999999999999                       99


Q ss_pred             HHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEE
Q psy9378         267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVS  346 (522)
Q Consensus       267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Glh  346 (522)
                      .++|++|.++||...+|||+.||.++.+.+|+++++|||+++++++++.++.|||++.+ ++..+|+.+|+++++++|+|
T Consensus       135 ~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~~~-~~~~lLd~ak~l~lnvvGvs  213 (448)
T KOG0622|consen  135 VSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDSTATCRLNLKFGCSLD-NCRHLLDMAKELELNVVGVS  213 (448)
T ss_pred             HHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCCCcccccccCccCCCHH-HHHHHHHHHHHcCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999998 99999999999999999999


Q ss_pred             EecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC--CCHHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378         347 FHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG--YSMNRIAEIINVALDEYFPVEEGVSIIAEP  424 (522)
Q Consensus       347 fH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~--~~~~~~a~~I~~~l~~~~~~~~~~~li~EP  424 (522)
                      ||+||.+.+++.|+++++.++.+++++++.|+++.+|||||||++++.  ..|+++++.|+.+++.|||.+ +++||+||
T Consensus       214 fHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~~In~ald~~Fp~~-~v~iiaEp  292 (448)
T KOG0622|consen  214 FHVGSGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIADVINTALDLYFPSG-GVDIIAEP  292 (448)
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEeecCCCCCCccchhhhhhhHHHHHHHHHHHhCCCC-CceEEecc
Confidence            999999999999999999999999999999999999999999999874  459999999999999999944 89999999


Q ss_pred             cceeeccceeEEEEEEEEEeeCCCCCC-----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeec
Q psy9378         425 GRYYVASAFTLATLIHSKRDILGANSS-----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFL  499 (522)
Q Consensus       425 GR~lva~ag~Lvt~V~~~K~~~~~~~g-----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~G  499 (522)
                      |||+|++|++|+++|+++|+......+     .+...+||+|||+|++|+|+|||+++++|.+.+....++..+.++|+|
T Consensus       293 GRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~~~~i~~~~~~~~e~e~~~~ssIwG  372 (448)
T KOG0622|consen  293 GRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDHQHPIPLVVKDPSEEEPLYKSSIWG  372 (448)
T ss_pred             chheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhhhcccCCcccccCCCccccceeeeeeec
Confidence            999999999999999999988653211     234679999999999999999999999998888877777799999999


Q ss_pred             CCCCCcccccc---------CcEEEEeccccC
Q psy9378         500 QESFLLSCLSL---------FFCVLWLCGQVY  522 (522)
Q Consensus       500 p~C~~~D~l~~---------~~~~~~~~~~~~  522 (522)
                      |||.+.|+++-         ||||.|.--|||
T Consensus       373 PtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAY  404 (448)
T KOG0622|consen  373 PTCDGLDVIAEDCLLPQLNVGDWLVFENMGAY  404 (448)
T ss_pred             CCcchHHHHHhhccCCCCCccCeEEEccCCcc
Confidence            99999998764         799999888887

>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>KOG0622|consensus Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information
>KOG3157|consensus Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>PRK01060 endonuclease IV; Provisional Back     alignment and domain information
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK02308 uvsE putative UV damage endonuclease; Provisional Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed Back     alignment and domain information
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed Back     alignment and domain information
>PRK12677 xylose isomerase; Provisional Back     alignment and domain information
>PRK09856 fructoselysine 3-epimerase; Provisional Back     alignment and domain information
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
2oo0_A471 A Structural Insight Into The Inhibition Of Human A 3e-80
2on3_A461 A Structural Insight Into The Inhibition Of Human A 3e-80
7odc_A424 Crystal Structure Ornithine Decarboxylase From Mous 6e-80
1d7k_A421 Crystal Structure Of Human Ornithine Decarboxylase 2e-79
1njj_A425 Crystal Structure Determination Of T. Brucei Ornith 2e-79
1qu4_A425 Crystal Structure Of Trypanosoma Brucei Ornithine D 2e-79
1szr_C425 A Dimer Interface Mutant Of Ornithine Decarboxylase 5e-79
2tod_A425 Ornithine Decarboxylase From Trypanosoma Brucei K69 8e-79
3btn_A448 Crystal Structure Of Antizyme Inhibitor, An Ornithi 3e-58
2nva_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 3e-45
2nv9_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 4e-45
4aib_A395 Crystal Structure Of Ornithine Decarboxylase From E 7e-32
2plj_A419 Crystal Structure Of LysineORNITHINE DECARBOXYLASE 1e-25
3n2b_A441 1.8 Angstrom Resolution Crystal Structure Of Diamin 6e-08
2p3e_A420 Crystal Structure Of Aq1208 From Aquifex Aeolicus L 8e-07
2qgh_A425 Crystal Structure Of Diaminopimelate Decarboxylase 2e-06
3c5q_A425 Crystal Structure Of Diaminopimelate Decarboxylase 2e-06
1twi_A434 Crystal Structure Of Diaminopimelate Decarboxylase 2e-05
3vab_A443 Crystal Structure Of Diaminopimelate Decarboxylase 2e-04
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy-1-Aminopropane Length = 471 Back     alignment and structure 
Iteration: 1

 Score =  296 bits (757), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/304 (50%), Positives = 197/304 (64%), Gaps = 33/304 (10%)
Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKP--- 266
           +DAFYV D+G+I++KH  W   LPRV P+YAVKCNDS+ +++ LAA GTGFDCASK    
Sbjct: 47  KDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQ 106
Query: 267 --------------------ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
                               +S I+YAA  G+  MTFD+E+EL KV + HP A+LV+RI 
Sbjct: 107 LVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIA 166
Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
            D   A C+L +KFG   +  +  LL  AK L++DVVGVSFHVGSGC DP  F +AI  A
Sbjct: 167 TDDSKAVCRLSVKFGA-TLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDA 225
Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMN--RIAEIINVALDEYFPVEEGVSIIAEP 424
           R +FD+G  +GFSM +LD+GGG+PG     +    I  +IN ALD+YFP + GV IIAEP
Sbjct: 226 RCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEP 285
Query: 425 GRYYVASAFTLATLIHSKRDILGANS-------SVPTHTMYYINDGVYGSFNCIIYDHAV 477
           GRYYVASAFTLA  I +K+ +L   +       S     MYY+NDGVYGSFNCI+YDHA 
Sbjct: 286 GRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAH 345
Query: 478 CTPI 481
             P+
Sbjct: 346 VKPL 349
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy- 1-Aminopropane Length = 461 Back     alignment and structure
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse, Truncated 37 Residues From The C-Terminus, To 1.6 Angstrom Resolution Length = 424 Back     alignment and structure
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine Decarboxylase Bound To D-ornithine And To G418 Length = 425 Back     alignment and structure
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine Decarboxylase Length = 425 Back     alignment and structure
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals Structure Of Gem Diamine Intermediate Length = 425 Back     alignment and structure
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a Mutant In Complex With Alpha-Difluoromethylornithine Length = 425 Back     alignment and structure
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine Decarboxylase Homologous Protein Length = 448 Back     alignment and structure
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Bound To Agmatine Length = 372 Back     alignment and structure
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Length = 372 Back     alignment and structure
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From Entamoeba Histolytica. Length = 395 Back     alignment and structure
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE COMPLEXED WITH Putrescine From Vibrio Vulnificus Length = 419 Back     alignment and structure
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. Length = 441 Back     alignment and structure
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus Length = 420 Back     alignment and structure
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l Mutant) From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M. Jannaschii In Co-Complex With L-Lysine Length = 434 Back     alignment and structure
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Brucella Melitensis Bound To Plp Length = 443 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 1e-132
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 2e-25
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 1e-131
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 8e-26
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 1e-131
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 3e-24
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 1e-130
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 1e-21
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 1e-129
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 1e-25
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 1e-118
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 3e-21
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 7e-23
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 2e-22
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 2e-21
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 4e-21
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 1e-20
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 2e-20
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 2e-06
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 4e-20
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 6e-20
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 1e-19
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 2e-19
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 4e-19
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 2e-05
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 2e-17
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 4e-16
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
 Score =  390 bits (1005), Expect = e-132
 Identities = 154/314 (49%), Positives = 195/314 (62%), Gaps = 33/314 (10%)

Query: 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---- 264
            +DAFYV D+G+I++KH  W   LPRV P+YAVKCNDS+ +++ LAA GTGFDCAS    
Sbjct: 46  DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 105

Query: 265 -------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRI 305
                              K +S I+YAA  G+  MTFD+E+EL KV + HP A+LV+RI
Sbjct: 106 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 165

Query: 306 RCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYS 365
             D   A C+L +KFG      +  LL  AK L++DVVGVSFHVGSGC DP  F +AI  
Sbjct: 166 ATDDSKAVCRLSVKFGATL-RTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISD 224

Query: 366 ARQIFDLGNSLGFSMRVLDLGGGYPGYTGY--SMNRIAEIINVALDEYFPVEEGVSIIAE 423
           AR +FD+G  +GFSM +LD+GGG+PG          I  +IN ALD+YFP + GV IIAE
Sbjct: 225 ARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAE 284

Query: 424 PGRYYVASAFTLATLIHSKRDILGANSSV-------PTHTMYYINDGVYGSFNCIIYDHA 476
           PGRYYVASAFTLA  I +K+ +L   +             MYY+NDGVYGSFNCI+YDHA
Sbjct: 285 PGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHA 344

Query: 477 VCTPIPFNVMDDSQ 490
              P+        +
Sbjct: 345 HVKPLLQKRPKPDE 358
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425 Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Length = 420 Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441 Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Length = 443 Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Length = 467 Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Length = 434 Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Length = 386 Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Length = 666 Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Length = 648 Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 100.0
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 100.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 100.0
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 100.0
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 100.0
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 100.0
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 100.0
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 100.0
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 100.0
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 100.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 100.0
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 100.0
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 100.0
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 100.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 100.0
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 100.0
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 100.0
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 100.0
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 100.0
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 100.0
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 99.95
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 99.94
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 99.94
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 99.93
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 99.92
3anu_A376 D-serine dehydratase; PLP-dependent fold-type III 99.92
3co8_A380 Alanine racemase; protein structure initiative II, 99.89
3gwq_A426 D-serine deaminase; structural genomics, joint cen 99.83
1rcq_A357 Catabolic alanine racemase DADX; alpha-beta barrel 99.82
2rjg_A379 Alanine racemase; alpha/beta barrel, cell shape, c 99.81
3llx_A376 Predicted amino acid aldolase or racemase; structu 99.81
4ecl_A374 Serine racemase, vantg; antibiotic resistance, van 99.79
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 99.67
3mub_A367 Alanine racemase; alpha/beta barrel, extended beta 99.62
3e5p_A371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.6
3kw3_A376 Alanine racemase; niaid, ssgcid, seattle structura 99.59
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 99.59
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 99.57
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 99.56
4a3q_A382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.54
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 99.54
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 99.5
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 99.5
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 99.5
3hur_A395 Alanine racemase; structural genomics, isomerase, 99.5
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 99.49
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 99.38
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 99.37
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 99.36
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 99.34
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 99.33
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 99.3
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 99.24
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 99.22
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 99.2
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 99.2
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 98.91
3r79_A244 Uncharacterized protein; PSI-biology, structural g 98.68
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 92.79
3obe_A305 Sugar phosphate isomerase/epimerase; structural ge 91.8
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 90.33
1i60_A278 IOLI protein; beta barrel, structural genomics, PS 89.45
3tva_A290 Xylose isomerase domain protein TIM barrel; struct 88.46
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 87.8
3m0m_A 438 L-rhamnose isomerase; beta/alpha barrel, HOMO-tetr 87.58
3kws_A287 Putative sugar isomerase; structural genomics, joi 87.39
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 87.04
3ngf_A269 AP endonuclease, family 2; structural genomics, se 87.01
3cqj_A295 L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre 86.5
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 86.09
3qc0_A275 Sugar isomerase; TIM barrel, structural genomics, 86.01
3u0h_A281 Xylose isomerase domain protein; structural genomi 85.69
1k77_A260 EC1530, hypothetical protein YGBM; TIM barrel, str 84.85
3ktc_A333 Xylose isomerase; putative sugar isomerase, struct 84.42
2x7v_A287 Probable endonuclease 4; DNA repair protein, metal 83.38
2q02_A272 Putative cytoplasmic protein; structural genomics, 83.32
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 83.07
3vni_A294 Xylose isomerase domain protein TIM barrel; D-psic 82.73
1qtw_A285 Endonuclease IV; DNA repair enzyme, TIM barrel, tr 81.85
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-58  Score=491.32  Aligned_cols=313  Identities=50%  Similarity=0.834  Sum_probs=272.9

Q ss_pred             CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------C
Q psy9378         209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------K  265 (522)
Q Consensus       209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K  265 (522)
                      .+||||+||++.|++|+++|++++|+++++||+|||+++.|++++.++|+||||+|                       |
T Consensus        36 ~~tP~~v~dl~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~Ii~~g~~k  115 (424)
T 7odc_A           36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCK  115 (424)
T ss_dssp             CCCCEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSSC
T ss_pred             CCCcEEEeeHHHHHHHHHHHHHhCCCCeEEEEeccCCcHHHHHHHHHcCCcEEECCHHHHHHHHHcCCChhhEEECCCCC
Confidence            58999999999999999999999999999999999999999999999999999999                       8


Q ss_pred             CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEE
Q psy9378         266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGV  345 (522)
Q Consensus       266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Gl  345 (522)
                      ++++|++|+++|+..++|||++||++|.+.+++++|+||||++...+++...+|||++++ ++.++++.+++.++++.||
T Consensus       116 ~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~~~~~~~~~~~skfG~~~~-~~~~~~~~~~~~~l~l~Gl  194 (424)
T 7odc_A          116 QVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLK-TSRLLLERAKELNIDVIGV  194 (424)
T ss_dssp             CHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------CCCBCHH-HHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHhCCCCEEEE
Confidence            999999999999987899999999999999999999999999866666677899999998 9999999998889999999


Q ss_pred             EEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHHHHHHHHHHHhhCCCCCCcEEEec
Q psy9378         346 SFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRIAEIINVALDEYFPVEEGVSIIAE  423 (522)
Q Consensus       346 hfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~a~~I~~~l~~~~~~~~~~~li~E  423 (522)
                      |||+|||+.+++.|.++++.+.++++.+++.|+++++|||||||++.+  .+++++|++.|+++++++|+...+++|++|
T Consensus       195 h~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~~~~~ldiGGG~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ii~E  274 (424)
T 7odc_A          195 SFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAE  274 (424)
T ss_dssp             ECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCGGGTCEEEEC
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCCCCCCHHHHHHHHHHHHHHHhcccCCcEEEEC
Confidence            999999999999999999999999998999999999999999999865  358999999999999999874356899999


Q ss_pred             CcceeeccceeEEEEEEEEEeeCCCCC-------CCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEe
Q psy9378         424 PGRYYVASAFTLATLIHSKRDILGANS-------SVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSP  496 (522)
Q Consensus       424 PGR~lva~ag~Lvt~V~~~K~~~~~~~-------g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~  496 (522)
                      ||||+|++||+|+|+|+++|+..+...       +...+++|++|+|+|++|++.+|++.+..|.+.+...+++..++++
T Consensus       275 PGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ly~~~~~~p~~~~~~~~~~~~~~~~  354 (424)
T 7odc_A          275 PGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSS  354 (424)
T ss_dssp             CSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTHHHHHSCCCCCCEESSCCCTTCCEEEEE
T ss_pred             CCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEeCCcCCChhhHhhccCccceeeecCCCCCCCeeeEE
Confidence            999999999999999999998753110       1122578999999999999999999887787765444445678999


Q ss_pred             eecCCCCCcccccc---------CcEEEEeccccC
Q psy9378         497 LFLQESFLLSCLSL---------FFCVLWLCGQVY  522 (522)
Q Consensus       497 l~Gp~C~~~D~l~~---------~~~~~~~~~~~~  522 (522)
                      |+||+|+++|+++.         ||+|+|...|||
T Consensus       355 v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY  389 (424)
T 7odc_A          355 IWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAY  389 (424)
T ss_dssp             EECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSS
T ss_pred             EECCCCCCCCEecccccCCCCCCCCEEEECCCCCC
Confidence            99999999997763         799999888888
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Back     alignment and structure
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A* Back     alignment and structure
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 Back     alignment and structure
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A Back     alignment and structure
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 Back     alignment and structure
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* Back     alignment and structure
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* Back     alignment and structure
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d7odca2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 1e-40
d1f3ta2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 3e-35
d1twia2264 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase L 3e-19
d1f3ta1169 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine 2e-18
d1f3ta1169 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine 3e-17
d7odca1177 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine d 3e-17
d7odca1177 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine d 1e-15
d1hkva2265 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase L 1e-16
d1knwa2247 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase L 2e-13
d1knwa1174 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarb 1e-10
d1hkva1181 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarb 5e-08
d1twia1170 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decar 5e-07
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Length = 240 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (364), Expect = 1e-40
 Identities = 122/241 (50%), Positives = 156/241 (64%), Gaps = 26/241 (10%)

Query: 217 DVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKP---------- 266
           D+G+I++KH  W   LPRV P+YAVKCNDS+ ++  LAA+GTGFDCASK           
Sbjct: 1   DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGV 60

Query: 267 -------------ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQ 313
                        +S I+YAA  G+  MTFD+EIEL KV + HP A+LV+RI  D   A 
Sbjct: 61  PAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSKAV 120

Query: 314 CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLG 373
           C+L +KFG   +  +  LL  AK L++DV+GVSFHVGSGC DP  F +A+  AR +FD+ 
Sbjct: 121 CRLSVKFGAT-LKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMA 179

Query: 374 NSLGFSMRVLDLGGGYPGY--TGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVAS 431
             +GFSM +LD+GGG+PG   T      I  +IN ALD+YFP + GV IIAEPGRYYVAS
Sbjct: 180 TEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVAS 239

Query: 432 A 432
           A
Sbjct: 240 A 240
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Length = 240 Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 264 Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Length = 169 Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Length = 169 Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 177 Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 177 Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 265 Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 100.0
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 100.0
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 100.0
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 100.0
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 100.0
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.83
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.81
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.74
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.71
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.63
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.61
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.59
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.51
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.45
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.4
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.39
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 99.23
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 99.07
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 93.88
d1i60a_278 Hypothetical protein IolI {Bacillus subtilis [TaxI 92.14
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-43  Score=346.87  Aligned_cols=215  Identities=56%  Similarity=0.996  Sum_probs=194.3

Q ss_pred             eHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CCHHHHHHH
Q psy9378         217 DVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KPISHIRYA  273 (522)
Q Consensus       217 Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~~~eL~~A  273 (522)
                      |++.|.+|+++|+++||+++++||+|||+++.|++++.++|+|+||+|                       |+.++|+.|
T Consensus         1 dl~~i~~~~~~~~~~~p~v~~~YA~KaN~~~~il~~l~~~G~g~dv~S~~El~~a~~aG~~~~~Iv~~g~~K~~~~l~~a   80 (240)
T d7odca2           1 DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYA   80 (240)
T ss_dssp             EHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHcCCCeEeecchHHHHHHhcCCCccceEecCCccchHHHHHH
Confidence            799999999999999999999999999999999999999999999999                       999999999


Q ss_pred             HHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCC
Q psy9378         274 AEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC  353 (522)
Q Consensus       274 ~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~  353 (522)
                      +++|+..+++||++|++++.+..+.+++.+|+++.....+....+|||++.+ ++.++++.++..++++.|||||+|||+
T Consensus        81 ~~~g~~~~~~ds~~el~~i~~~~~~~~v~~ri~~~~~~~~~~~~~kfG~~~~-~~~~~~~~~~~~~l~l~GlH~H~GSq~  159 (240)
T d7odca2          81 ASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLK-TSRLLLERAKELNIDVIGVSFHVGSGC  159 (240)
T ss_dssp             HHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------CCCBCHH-HHHHHHHHHHHTTCEEEEEECCCCSSC
T ss_pred             HHhhcccccchhHHHHHHHHHhcccccccccccccccccccCcCccccccHH-HHHHHHHHhhhcCceEEeecccccccc
Confidence            9999988999999999999999999999999999876666778899999998 899999988889999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeecc
Q psy9378         354 GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVAS  431 (522)
Q Consensus       354 ~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~  431 (522)
                      .+++.|.++++.+..+++.+++.|+++++|||||||+..+  ..++++|++.|++.++++++.+.+++|++|||||+||+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~EPGR~lvA~  239 (240)
T d7odca2         160 TDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVAS  239 (240)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCGGGTCEEEECCSHHHHGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCeeEEEeCCCcCCCCCCCCCHHHHHHHHHHHHHHhcccCCCCEEEEeCcHHHhcC
Confidence            9999999999999999998899999999999999999865  46799999999999999987556799999999999998


Q ss_pred             c
Q psy9378         432 A  432 (522)
Q Consensus       432 a  432 (522)
                      |
T Consensus       240 A  240 (240)
T d7odca2         240 A  240 (240)
T ss_dssp             G
T ss_pred             C
Confidence            6
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure