Psyllid ID: psy9384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------98
Protein Sequence
MTTETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVVSD
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHccHHHHcccHHHHHHHHHHHcccccccccccEEEEEHHHHcccccccccccccccccHHHHHHHcccccccHHHHHcccccccccccccccHHHHHcHHHHHHccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccHHcccccccccHHHHHHHHHHHHHHEEEcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHcccHHccccHHHHHHHcccHHHHcccccHccEEEEEccccHHHHHcccccHHHHHHHHHHHcHHcccccccccHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccEEEEEEccccccccHHHHHHHccccHHHHHHHHcccccHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccccccccEcccccEHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHcHcccccHHHHHHHccccccccHHHHccccccHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mttetpgqskkffcrEWAFVKLVHCLesktnskpgnnggaliiggpgsgkttlckeivfpsaessfsQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEqfsssespfseaFSTIVEDESIKALLKSDQLLQDSDEVFKKALILplaqikhpktsyFILVDSidethvtnkkiysdkatCSIADLLarnhhlfppwlFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLktkevsdtpcsdtpvsritmfdsknQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAganinhtdcegwtplrsaswgGHSAVVKLLLQsgadvncsdmggRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGahvnaadsEGRTALIASAYMGHADIVSSILEYdadinqqdndgrtALSVSAlcvpssdgYAKVVSILLEkgakvdhedregmTPLLVAAFEGHRDVCEILLEneadqdhidksgrtplwaAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGclaggrqtgsldeqhrdncgwtplhYAAIEGHEEVCRALLEAGakvdqvdndgrapliLAAQDGHYHLVEMFLEQYEANVnqkshdgrTALRVNMKNVTKLSFWYLLIQPLLNIIlsslfpltvedlftkfsttnphisrqEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRylcslndghlihavdlsqrrqtssssavpsatdehfsrdtHMRIILGSSKVGEKISIAAQEGHEDCVRLLLhygadpkhsdhcgrNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYaddipvvsd
Flexible Loop (DISEMBL)
mttetpgqskkffcrEWAFVKLVHCLESktnskpgnngGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALIlplaqikhpktSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQflktkevsdtpcsdtpvsRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKgakvdhedreGMTPLLVAAFEGHRDVCEILLEneadqdhidKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKfsttnphisrqeyKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDlsqrrqtssssavpsatdehfsrdtHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYaddipvvsd
Low Complexity Region (SEG)
MTTETPGQSKKFFCREWAFVKLVHCLESKTNSKpgnnggaliiggpgsgKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVeqfsssespfseafsTIVEDESIKAllksdqllqdsdEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVVSD
Disordered region (IsUnstruct)
**********KFFCREWAFVKLVHCLE*************LII******************************KKLLAYHFCQSYDLATFSVQNFIQSLVEQF**********FSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEV*********VSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDL*************************MRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI*****
Disordered Region (DISOPRED)
***********FFCREWAFVKLVHCLE*********NGGALIIGGPGSGKTTLCKEIVF***************KLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV*******DKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI*****
Disordered Region (DISEMBL)
********SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVE************FSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDL*******************FSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVVSD
Disordered Region (DISPRO)
********SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISxxxxxxxxxxxxxxxxxxxxxHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVVSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	978	2.2.26 [Sep-21-2011]
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.561	0.384	0.446	1e-137
Q502K3	1071	Serine/threonine-protein	no	N/A	0.398	0.364	0.324	4e-44
Q7T163	1672	Kinase D-interacting subs	no	N/A	0.377	0.220	0.340	4e-43
Q9EQG6	1762	Kinase D-interacting subs	no	N/A	0.394	0.219	0.337	5e-43
Q505D1	1053	Serine/threonine-protein	no	N/A	0.565	0.525	0.291	6e-42
O15084	1053	Serine/threonine-protein	no	N/A	0.565	0.525	0.291	6e-42
Q9ULH0	1771	Kinase D-interacting subs	no	N/A	0.380	0.210	0.328	9e-42
Q54KA7	986	Ankyrin repeat, PH and SE	yes	N/A	0.388	0.385	0.315	1e-41
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.340	0.177	0.348	1e-41
B2RXR6	993	Serine/threonine-protein	no	N/A	0.336	0.331	0.338	5e-41

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score =  489 bits (1260), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 279/625 (44%), Positives = 385/625 (61%), Gaps = 76/625 (12%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            +   DS  +++L       +++++   +      DLE+ D HG T L +AA QG    V 
Sbjct: 538  VNQCDSNGRTLLANAAYSGSLDVVNLLVS--RGADLEIEDAHGHTPLTLAARQGHTKVVN 595

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
             L+  GANINHTD +GWT LRSA+WGGH+ VV  LL +G  V+C+D   RTALRAAAWGG
Sbjct: 596  CLIGCGANINHTDQDGWTALRSAAWGGHTEVVSALLYAGVKVDCADADSRTALRAAAWGG 655

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++ + L         L  GA VN AD+EGRTALIA+AYMGH +IV  +L++ A++N +
Sbjct: 656  HEDIVLNL---------LQHGAEVNKADNEGRTALIAAAYMGHREIVEHLLDHGAEVNHE 706

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            D DGRTALSV+ALCVP+S G+A VVS+L+++GA+VDH D++GMTPLLVAA+EGH DV ++
Sbjct: 707  DVDGRTALSVAALCVPASKGHASVVSLLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDL 766

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE  AD DH D +GRTPL AAASMGHAS V  LLFWGA VD+ID+EGRTVLS+A+AQGN
Sbjct: 767  LLEGGADVDHTDNNGRTPLLAAASMGHASVVNTLLFWGAAVDSIDSEGRTVLSIASAQGN 826

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
            ++VV  LLDRG              LDE HRD+ GWTPLH AA EGH  +C AL+E GA+
Sbjct: 827  VEVVRTLLDRG--------------LDENHRDDAGWTPLHMAAFEGHRLICEALIEQGAR 872

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV----NMKNVTKL 751
             +++DNDGR P ILA+Q+GHY  V++ LE  ++N++Q+ +DGR ALRV      +++ +L
Sbjct: 873  TNEIDNDGRIPFILASQEGHYDCVQILLEN-KSNIDQRGYDGRNALRVAALEGHRDIVEL 931

Query: 752  SFWYLLI--------QPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKI 803
             F +           +P L  IL+    LT+ + F + +  N   S  E +  LH+    
Sbjct: 932  LFSHGADVNCKDADGRPTL-YILALENQLTMAEYFLE-NGANVEASDAEGRTALHVSCWQ 989

Query: 804  ISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSA 863
              +   + +I +H                          ++A D  +R      SA+ SA
Sbjct: 990  GHMEMVQVLIAYHAD------------------------VNAADNEKR------SALQSA 1019

Query: 864  TDEHFSRDTHMRIILGS------SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGR 917
              +   +   + I  G+      ++    + IAAQEGH D V++LL +GADP H+D  GR
Sbjct: 1020 AWQGHVKVVQLLIEHGAVVDHTCNQGATALCIAAQEGHIDVVQVLLEHGADPNHADQFGR 1079

Query: 918  NAFRVAAKSGHETVLRLLKQYADDS 942
             A RVAAK+GH  +++LL++Y   S
Sbjct: 1080 TAMRVAAKNGHSQIIKLLEKYGASS 1104

Homo sapiens (taxid: 9606)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  180 bits (457), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/410 (32%), Positives = 210/410 (51%), Gaps = 20/410 (4%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
           +T  D   Q+ LH   A      ++T L    +L++   D+ G+  L+ AA  G+ + V+
Sbjct: 100 VTARDKYWQTPLHIAAANRATRCVETLLPHVSSLNM--ADRTGRAPLHHAAQSGYQEMVK 157

Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
           +LL  GAN++ +D +   P+  A++ GH  VVKLL+  G+D +C D  G T L AAA  G
Sbjct: 158 LLLNKGANLSASDKKDRQPIHWAAYLGHLEVVKLLVSQGSDKSCKDKRGYTPLHAAAASG 217

Query: 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
           H++         VVK LL  GA ++  ++ G TAL  + Y G   + + ++   A++NQ 
Sbjct: 218 HVD---------VVKYLLRNGAEIDEPNAFGNTALHVACYTGQEAVANELVNRGANVNQP 268

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
           ++ G T L ++A+   S++G A  + +L+  GA V+ + +EG +PL +AA  G     +I
Sbjct: 269 NHRGYTPLHLAAV---STNG-ALCLELLVNNGADVNMQSKEGKSPLHMAAIHGRFTRSQI 324

Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
           L++N  + D +D+ G TPL  AA  GH   ++ L+  GA        G   L +A   G+
Sbjct: 325 LIQNGGEIDCVDRYGNTPLHVAAKYGHELLISTLMTNGADTARQGIHGMFPLHLAVLYGS 384

Query: 636 IDVVNQLLDRGMILGCLAGGRQ----TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
            D   +LL  G +   +    +    +   D    DN G T LH AA  G+ E    LL 
Sbjct: 385 SDCCRKLLSSGQLYSIVLSMSKEHVLSAGFDINTPDNFGRTCLHAAASGGNIECLNLLLS 444

Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           +GA +++ D  GR PL  AA +G Y  V + L    A VN++   G T L
Sbjct: 445 SGADMNKKDKFGRTPLHYAAANGRYQCV-VVLVGAGAEVNERDRSGCTPL 493

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score =  177 bits (448), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 144/423 (34%), Positives = 197/423 (46%), Gaps = 54/423 (12%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           L     E N+  +K  L   + +D      +GQT L +A+ QG ++ VQ L+  GAN+N 
Sbjct: 9   LFSYVEEENLAAVKVHLDKFKEVDGR--SDNGQTPLMLASEQGSLEIVQELIRRGANVNL 66

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL--- 463
            D + W+ L SA+  GH  VVK LL++ A +   DMGG TAL  A++ G +EV  VL   
Sbjct: 67  DDVDCWSALISAAKEGHVEVVKELLENSAYIEHRDMGGWTALTWASYKGRVEVATVLLEN 126

Query: 464 ----------------------GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
                                 G   +VKLLL  GA VN +D  G T LI +A  GH D 
Sbjct: 127 GANPNTTGQQYSVYPIIWAAGRGHAEIVKLLLEHGAKVNCSDKYGTTPLIWAARKGHYDC 186

Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
           V  +LE  AD++Q+      A S++AL V    GY +VV  LL++   V+  D++G T L
Sbjct: 187 VMHLLENGADVDQEG-----ANSMTALIVAVKGGYTEVVKELLKRNPNVNMTDKDGNTAL 241

Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
           ++AA EG+ ++ + LL+     +  D+SG T L  A   GH   V  LL   A +D    
Sbjct: 242 MIAAKEGYTEIVQDLLDAGTYVNIPDRSGDTVLIGAVRGGHVEIVRALLHKYADIDIRGQ 301

Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
           E +T L  A  +GN  +V        IL C      T    E        TPL  A    
Sbjct: 302 ENKTALYWAVEKGNATMVRD------ILQCNPDTETTTKDSE--------TPLIKATKMR 347

Query: 682 HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
             EV   LL+ GAKV  VD  G  PL +A +     L E+ L        +   DGR   
Sbjct: 348 SIEVVELLLDKGAKVSAVDKRGDTPLHIAIRGRSRRLAELLL--------RNPKDGRLLY 399

Query: 742 RVN 744
           R N
Sbjct: 400 RPN 402

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score =  177 bits (448), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 211/418 (50%), Gaps = 32/418 (7%)

Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA 402
           +QSV++ +  E NI  LK  L+ C+  D++  ++ GQT L +AA QG V+ V+ LL+ GA
Sbjct: 6   SQSVINYV-EEENIPALKALLEKCK--DVDERNECGQTPLMLAAEQGNVEIVKELLKNGA 62

Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
           N N  D + WT L SAS  GH  +V+ LL+SGA +   DMGG TAL  A + G  +    
Sbjct: 63  NCNLEDLDNWTALISASKEGHIHIVEELLKSGASLEHRDMGGWTALMWACYKGRTD---- 118

Query: 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTA 522
                VV+LLL+ GA+ +         +I +A  GHADIV  +L+  A +N  D  G T 
Sbjct: 119 -----VVELLLSHGANPSVTGLYSVYPIIWAAGRGHADIVHLLLQNGAKVNCSDKYGTTP 173

Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
           L  +A       G+ + V  LL  GA VD E    MT L+VA   G+    + +L+   +
Sbjct: 174 LVWAA-----RKGHLECVKHLLAMGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPN 228

Query: 583 QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
            +  DK G T L  A+  GH   V  LL  G YV+  D  G TVL  A   G++++V  L
Sbjct: 229 VNLTDKDGNTALMIASKEGHIEIVQDLLDAGTYVNIPDRSGDTVLIGAVRGGHVEIVRAL 288

Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
           L            ++   +D + +DN   T L++A  +G+  + R +L+     +    D
Sbjct: 289 L------------QKYADIDIRGQDNK--TALYWAVEKGNATMVRDILQCNPDTEICTKD 334

Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQP 760
           G  PLI A +  +  +VE+ L++  A V+     G T L V ++  ++     LL  P
Sbjct: 335 GETPLIKATKMRNIEVVELLLDK-GAKVSAVDKKGDTPLHVAIRGRSRRLAELLLRNP 391

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score =  173 bits (439), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 273/621 (43%), Gaps = 68/621 (10%)

Query: 334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
           +R+   DSK  + LH+  A  +   ++  LK   + D+   DK+ QT L++AA    V  
Sbjct: 65  ARVNAKDSKWLTPLHRAVASCSEEAVQILLK--HSADVNARDKNWQTPLHIAAANKAVKC 122

Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
            + L+   +N+N +D  G T L  A++ GH  +VKLLL  GA++N  D   R A+  AA+
Sbjct: 123 AESLVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAY 182

Query: 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADIN 513
            GH+E         VVKLL++ GA V   D +  T L A+A  G   +V  +L+   D+N
Sbjct: 183 MGHIE---------VVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMN 233

Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC 573
           + +  G T L V+       +G   VV+ L++ GA V+ ++ +G TPL  AA   H  +C
Sbjct: 234 EPNAYGNTPLHVACY-----NGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGALC 288

Query: 574 -EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
            E+L+ N AD +   K G+TPL   A  G  S    ++  GA +D  D  G T L +AA 
Sbjct: 289 LELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAAR 348

Query: 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
            G+  ++N L+  G               D   R   G  PLH AA+ G  + CR LL +
Sbjct: 349 YGHELLINTLITSGA--------------DTAKRGIHGMFPLHLAALSGFSDCCRKLLSS 394

Query: 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLS 752
           G  +D  D+ GR  L  AA  G        L    A+ N+K   GR+ L     N     
Sbjct: 395 GFDIDTPDDFGRTCLHAAAAGG-NLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQC 453

Query: 753 FWYLL-------------IQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHI 799
            + L+               PL     S      +E L    +  NP I  ++    +H 
Sbjct: 454 LFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLR--NDANPGIRDKQGYNAVHY 511

Query: 800 LRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA 859
                  A   H +      SE  LDV          L +      +  S  R T S   
Sbjct: 512 ------SAAYGHRLCLQLIASETPLDV----------LMETSGTDMLSDSDNRATISPLH 555

Query: 860 VPSATDEHFSRDTHMRIILG----SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHC 915
           + +    H + +  ++ +L     +S     + +AA +GH +CV +L++ GA     D+ 
Sbjct: 556 LAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYV 615

Query: 916 -GRNAFRVAAKSGHETVLRLL 935
             R     AA +GH   LRLL
Sbjct: 616 LKRTPIHAAATNGHSECLRLL 636

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5

 Score =  173 bits (439), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 273/621 (43%), Gaps = 68/621 (10%)

Query: 334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
           +R+   DSK  + LH+  A  +   ++  LK   + D+   DK+ QT L++AA    V  
Sbjct: 65  ARVNAKDSKWLTPLHRAVASCSEEAVQVLLK--HSADVNARDKNWQTPLHIAAANKAVKC 122

Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
            + L+   +N+N +D  G T L  A++ GH  +VKLLL  GA++N  D   R A+  AA+
Sbjct: 123 AEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAY 182

Query: 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADIN 513
            GH+E         VVKLL++ GA V   D +  T L A+A  G   +V  +L+   D+N
Sbjct: 183 MGHIE---------VVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMN 233

Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC 573
           + +  G T L V+       +G   VV+ L++ GA V+ ++ +G TPL  AA   H  +C
Sbjct: 234 EPNAYGNTPLHVACY-----NGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALC 288

Query: 574 -EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
            E+L+ N AD +   K G+TPL   A  G  S    ++  GA +D  D  G T L +AA 
Sbjct: 289 LELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAAR 348

Query: 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
            G+  ++N L+  G               D   R   G  PLH AA+ G  + CR LL +
Sbjct: 349 YGHELLINTLITSGA--------------DTAKRGIHGMFPLHLAALSGFSDCCRKLLSS 394

Query: 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLS 752
           G  +D  D+ GR  L  AA  G        L    A+ N+K   GR+ L     N     
Sbjct: 395 GFDIDTPDDFGRTCLHAAAAGG-NLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQC 453

Query: 753 FWYLL-------------IQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHI 799
            + L+               PL     S      +E L    +  NP I  ++    +H 
Sbjct: 454 LFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLR--NDANPGIRDKQGYNAVHY 511

Query: 800 LRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA 859
                  A   H +      SE  LDV          L +      +  S  R T S   
Sbjct: 512 ------SAAYGHRLCLQLIASETPLDV----------LMETSGTDMLSDSDNRATISPLH 555

Query: 860 VPSATDEHFSRDTHMRIILG----SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHC 915
           + +    H + +  ++ +L     +S     + +AA +GH +CV +L++ GA     D+ 
Sbjct: 556 LAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYI 615

Query: 916 -GRNAFRVAAKSGHETVLRLL 935
             R     AA +GH   LRLL
Sbjct: 616 LKRTPIHAAATNGHSECLRLL 636

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Homo sapiens (taxid: 9606)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score =  172 bits (437), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 140/426 (32%), Positives = 204/426 (47%), Gaps = 54/426 (12%)

Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA 402
           +QSV++    E NI  LK  L+ C+  D++  ++ GQT L +AA QG ++ V+ L++ GA
Sbjct: 6   SQSVIN-YVEEENIPALKALLEKCK--DVDERNECGQTPLMIAAEQGNLEIVKELIKNGA 62

Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
           N N  D + WT L SAS  GH  +V+ LL+ G ++   DMGG TAL  A + G  +V  +
Sbjct: 63  NCNLEDLDNWTALISASKEGHVHIVEELLKCGVNLEHRDMGGWTALMWACYKGRTDVVEL 122

Query: 463 L------------------------GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
           L                        G   +V LLL  GA VN +D  G T L+ +A  GH
Sbjct: 123 LLSHGANPSVTGLYSVYPIIWAAGRGHADIVHLLLQNGAKVNCSDKYGTTPLVWAARKGH 182

Query: 499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGM 558
            + V  +L   AD++Q+      A S++AL V    GY + V  +L++   V+  D++G 
Sbjct: 183 LECVKHLLAMGADVDQEG-----ANSMTALIVAVKGGYTQSVKEILKRNPNVNLTDKDGN 237

Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
           T L++A+ EGH ++ + LL+     +  D+SG T L  A   GH   V  LL   A +D 
Sbjct: 238 TALMIASKEGHTEIVQDLLDAGTYVNIPDRSGDTVLIGAVRGGHVEIVRALLQKYADIDI 297

Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
              + +T L  A  +GN  +V        IL C        + D +     G TPL  A 
Sbjct: 298 RGQDNKTALYWAVEKGNATMVRD------ILQC--------NPDTEICTKDGETPLIKAT 343

Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR 738
              + EV   LL+ GAKV  VD  G  PL +A +     L E+ L        +   DGR
Sbjct: 344 KMRNIEVVELLLDKGAKVSAVDKKGDTPLHIAIRGRSRKLAELLL--------RNPKDGR 395

Query: 739 TALRVN 744
              R N
Sbjct: 396 LLYRPN 401

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 203/412 (49%), Gaps = 32/412 (7%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
           +   D KN + LHK     +   +   L      D   V  +G+T L+ A+  G    V+
Sbjct: 129 VNTKDDKNGTPLHKASLFASAECVLYLLNG--KADPRAVTTNGETPLHHASAGGNPQCVE 186

Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
           +L++A + +N  D +  TPL  AS+ GHS+ V LLL+ GA V+  D+ G + L  AA  G
Sbjct: 187 LLIKADSKVNAVDNDCITPLHQASFSGHSSCVSLLLKKGAKVDPRDIHGISPLHNAASAG 246

Query: 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
           +++          V+ L+  G ++N  D EG T L  + + G+  +   ++E  A IN  
Sbjct: 247 YVDC---------VEQLVRNGENINCVDIEGVTPLHHTCFNGNLQLTKRLIELGAKINMV 297

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLE-KGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
           D  G T L  +A      +G+ +V   LL      +D  D    T L +AAF G  D+ +
Sbjct: 298 DEMGETPLHKAAF-----NGHKEVCEYLLYLDPTMIDCRDSRQSTSLHLAAFNGLLDMVD 352

Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG 634
           +L+  +A  +  D+ G TPL  A+  GH+SC  LL+  GA +  +D++G T L  AA  G
Sbjct: 353 LLIRYKAQINIKDEEGATPLHKASFNGHSSCAKLLVDKGAPICIVDSQGATPLHKAAFNG 412

Query: 635 NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
               +  L+  G  L              + +D+ G TPLH AA  GH + CR LL+ GA
Sbjct: 413 RSKCLATLIRSGAEL--------------EVKDSQGGTPLHNAAYNGHSDCCRILLKKGA 458

Query: 695 KVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK 746
            V+ VD     PL LA+  G    V++ + Q++A ++ K+  G+T L   +K
Sbjct: 459 NVNAVDTHSSTPLHLASAAGARDTVDVLI-QFKARIDAKNFAGKTPLVYAIK 509

Dictyostelium discoideum (taxid: 44689)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  172 bits (435), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 177/362 (48%), Gaps = 29/362 (8%)

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
           T L+VAAH G     ++LL+ GA  N     G+TPL  A    H  V++LLL++GA ++ 
Sbjct: 340 TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDA 399

Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
               G T L  A++ GHL +         VK LL  GA  N ++ +  T L  +A  GH 
Sbjct: 400 VTESGLTPLHVASFMGHLPI---------VKNLLQRGASPNVSNVKVETPLHMAARAGHT 450

Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT 559
           ++   +L+  A +N +  D +T L  +A       G+  +V +LLE  A  +     G T
Sbjct: 451 EVAKYLLQNKAKVNAKAKDDQTPLHCAARI-----GHTNMVKLLLENNANPNLATTAGHT 505

Query: 560 PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI 619
           PL +AA EGH +    LLE EA Q  + K G TPL  AA  G      LLL   A+ +  
Sbjct: 506 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 565

Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
              G T L VA    N+D+V  LL RG       G   + + +       G+TPLH AA 
Sbjct: 566 GKNGLTPLHVAVHHNNLDIVKLLLPRG-------GSPHSPAWN-------GYTPLHIAAK 611

Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
           +   EV R+LL+ G   +     G  PL LAAQ+GH  +V + L + +AN N  +  G T
Sbjct: 612 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLT 670

Query: 740 AL 741
            L
Sbjct: 671 PL 672

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score =  170 bits (430), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 184/390 (47%), Gaps = 61/390 (15%)

Query: 351 CAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE 410
           CAE  I LL +         + + D+ G+TAL+ AA  G ++ V +LL  GANIN  D +
Sbjct: 122 CAEVIIPLLSS---------VNVSDRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKK 172

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
               L  A++ GH  VV LL+  GA+V C D  G T L AAA  G + V         VK
Sbjct: 173 DRRALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQISV---------VK 223

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA--- 527
            LL  G  ++  +  G TAL  + Y G   +V+ +++Y A++NQ +N G T L  +A   
Sbjct: 224 HLLNLGVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNNSGFTPLHFAAAST 283

Query: 528 ---LC------------VPSSDGYAKV-----------VSILLEKGAKVDHEDREGMTPL 561
              LC            + S DG + +              L++ G ++D  D++G TPL
Sbjct: 284 HGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPL 343

Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
            VAA  GH  +   L+ + AD          PL  AA   H+ C   LL  G  +DT D 
Sbjct: 344 HVAARHGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFEIDTPDT 403

Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
            GRT L  AAA GN++ +  L              Q+   D   +D CG TPLHYAA   
Sbjct: 404 FGRTCLHAAAAGGNVECIKLL--------------QSSGADFHKKDKCGRTPLHYAAANC 449

Query: 682 HEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
           H    +AL+  GA V++ D+ GR  L  AA
Sbjct: 450 HFHCIKALVTTGANVNETDDWGRTALHYAA 479

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	978
328780079	1466	PREDICTED: ankyrin repeat domain-contain	0.566	0.377	0.526	1e-164
380029384	1277	PREDICTED: ankyrin repeat domain-contain	0.570	0.436	0.523	1e-163
340722825	1467	PREDICTED: ankyrin repeat domain-contain	0.566	0.377	0.518	1e-163
345479528	1596	PREDICTED: ankyrin repeat domain-contain	0.554	0.339	0.511	1e-163
383857196	1467	PREDICTED: ankyrin repeat domain-contain	0.566	0.377	0.521	1e-163
307179347	1503	Ankyrin repeat domain-containing protein	0.569	0.370	0.514	1e-157
350403662	1470	PREDICTED: ankyrin repeat domain-contain	0.542	0.361	0.485	1e-149
350403665	1467	PREDICTED: ankyrin repeat domain-contain	0.542	0.361	0.485	1e-149
189238284	1422	PREDICTED: similar to CG10011 CG10011-PA	0.546	0.375	0.495	1e-147
242012557	1682	ankyrin repeat-containing protein, putat	0.408	0.237	0.605	1e-145

>gi|328780079|ref|XP_393405.4| PREDICTED: ankyrin repeat domain-containing protein 50 [Apis mellifera]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 326/619 (52%), Positives = 408/619 (65%), Gaps = 65/619 (10%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  ++VLH L A+ N +LL+  L +C    LE  D+HGQT LN+AA  G+ D V+
Sbjct: 570  INQADSCGRTVLHTLAADGNASLLELALATCPQAKLEATDRHGQTPLNLAARHGYADVVR 629

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL AGA  +H DC+GWT LR+A+WGGH+ VV++LL+ GA V+C+D   RTALRAAAWGG
Sbjct: 630  VLLAAGACADHADCDGWTALRAAAWGGHTQVVEMLLEHGAMVDCADWDQRTALRAAAWGG 689

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 690  HEDI---------VKALLQHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 740

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            DNDGRTALSV+ALCVPS+ GYAKVV+ILLE+GA VDH+D++GMTPLLVAAFEGHRDVCE+
Sbjct: 741  DNDGRTALSVAALCVPSNHGYAKVVTILLERGAAVDHQDKDGMTPLLVAAFEGHRDVCEL 800

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D +GRTPLWAAASMGH S VALLLFWG YVD+ID EGRTVLSVAAAQG 
Sbjct: 801  LLEYEADVDHCDATGRTPLWAAASMGHGSVVALLLFWGCYVDSIDNEGRTVLSVAAAQGG 860

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLLDRG              LDEQHRDN GWTPLHYAA EGH +VC ALLEAGAK
Sbjct: 861  TDVVKQLLDRG--------------LDEQHRDNSGWTPLHYAAFEGHIDVCEALLEAGAK 906

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWY 755
            +D+ DNDG+  L+LAAQ+GH  LVE  LEQ+ A ++Q +HDG+TALR     +  L   Y
Sbjct: 907  IDETDNDGKGALMLAAQEGHAALVERLLEQHGAPIDQHAHDGKTALR-----LAALEGHY 961

Query: 756  LLIQPLL--NIIL--------SSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIIS 805
              ++ LL  N  +        S+L+ L +E+          H +R + + R         
Sbjct: 962  DTVRVLLAHNADVNAKDADGRSTLYILALENRLAMARFLLEH-ARADVESR--------- 1011

Query: 806  IANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSS-----SAV 860
              ++E     H   S W     H     L     G  ++A D   R    S+     +A+
Sbjct: 1012 --DSEGRTPLH--VSAW---QGHVEMVALLLTEGGASVNACDNENRTPLHSAAWQGHAAI 1064

Query: 861  PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAF 920
                 EH +   H     G++ +G    IAAQEGHE CVR LL++GADP HSDHCGRNA 
Sbjct: 1065 VRLLLEHGATPDHT-CNQGATALG----IAAQEGHEHCVRALLNHGADPSHSDHCGRNAI 1119

Query: 921  RVAAKSGHETVLRLLKQYA 939
            +VAAKSGH+TV+RLL++Y+
Sbjct: 1120 KVAAKSGHDTVVRLLEEYS 1138

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029384|ref|XP_003698354.1| PREDICTED: ankyrin repeat domain-containing protein 50 [Apis florea]

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 322/615 (52%), Positives = 405/615 (65%), Gaps = 57/615 (9%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  ++VLH L A+ N +LL+  L +C    LE  D+HGQT LN+AA  G+ D V+
Sbjct: 570  INQADSCGRTVLHTLAADGNASLLELALATCPQAKLEATDRHGQTPLNLAARHGYADVVR 629

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL AGA  +H DC+GWT LR+A+WGGH+ VV++LL+ GA V+C+D   RTALRAAAWGG
Sbjct: 630  VLLAAGACADHADCDGWTALRAAAWGGHTQVVEMLLEHGAMVDCADWDQRTALRAAAWGG 689

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 690  HEDI---------VKALLQHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 740

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            DNDGRTALSV+ALCVPS+ GYAKVV+ILLE+GA VDH+D++GMTPLLVAAFEGHRDVCE+
Sbjct: 741  DNDGRTALSVAALCVPSNHGYAKVVTILLERGAAVDHQDKDGMTPLLVAAFEGHRDVCEL 800

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D +GRTPLWAAASMGH S VALLLFWG YVD+ID EGRTVLSVAAAQG 
Sbjct: 801  LLEYEADVDHCDATGRTPLWAAASMGHGSVVALLLFWGCYVDSIDNEGRTVLSVAAAQGG 860

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLLDRG              LDEQHRDN GWTPLHYAA EGH +VC ALLEAGAK
Sbjct: 861  TDVVKQLLDRG--------------LDEQHRDNSGWTPLHYAAFEGHIDVCEALLEAGAK 906

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWY 755
            +D+ DNDG+  L+LAAQ+GH  LVE  LEQ+ A ++Q +HDG+TALR     +  L   Y
Sbjct: 907  IDETDNDGKGALMLAAQEGHAALVERLLEQHGAPIDQHAHDGKTALR-----LAALEGHY 961

Query: 756  LLIQPLL--NIIL--------SSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIIS 805
              ++ LL  N  +        S+L+ L +E+          H +R + + R    R  + 
Sbjct: 962  DTVRVLLAHNADVNAKDADGRSTLYILALENRLAMARFLLEH-ARADVESRDSEGRTPLH 1020

Query: 806  I-ANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSAT 864
            + A   H+ +     +E    V  C       L+                   +A+    
Sbjct: 1021 VSAWQGHVEMVALLLTEGSASVNACDNENRTPLHSA------------AWQGHAAIVRLL 1068

Query: 865  DEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAA 924
             EH +   H     G++ +G    IAAQEGHE CVR LL++GADP HSDHCGRNA +VAA
Sbjct: 1069 LEHGATPDHT-CNQGATALG----IAAQEGHEHCVRALLNHGADPSHSDHCGRNAIKVAA 1123

Query: 925  KSGHETVLRLLKQYA 939
            KSGH+TV+RLL++Y+
Sbjct: 1124 KSGHDTVVRLLEEYS 1138

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722825|ref|XP_003399801.1| PREDICTED: ankyrin repeat domain-containing protein 50-like [Bombus terrestris]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 321/619 (51%), Positives = 406/619 (65%), Gaps = 65/619 (10%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  ++VLH L A+ N +LL+  L +C    LE  D+HGQT LN+AA  G+ D V+
Sbjct: 571  INQADSCGRTVLHTLAADGNASLLELALATCPQAKLEATDRHGQTPLNLAARHGYADVVR 630

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL +GA  +H DC+GWT LR+A+WGGH+ VV++LL+ GA V+C+D   RTALRAAAWGG
Sbjct: 631  VLLASGACADHADCDGWTALRAAAWGGHTQVVEMLLEHGAMVDCADWDQRTALRAAAWGG 690

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 691  HEDI---------VKALLQHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 741

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            DNDGRTALSV+ALCVPS+ GYAKVV+ILLE+GA VDH+D++GMTPLLVAAFEGHRDVCE+
Sbjct: 742  DNDGRTALSVAALCVPSNHGYAKVVTILLERGAAVDHQDKDGMTPLLVAAFEGHRDVCEL 801

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D +GRTPLWAAASMGH S VALLLFWG YVD+ID EGRTVLSVAAAQG 
Sbjct: 802  LLEYEADVDHCDATGRTPLWAAASMGHGSVVALLLFWGCYVDSIDNEGRTVLSVAAAQGG 861

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLLDRG              LDEQHRDN GWTPLHYAA EGH +VC ALLEAGAK
Sbjct: 862  TDVVKQLLDRG--------------LDEQHRDNSGWTPLHYAAFEGHIDVCEALLEAGAK 907

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWY 755
            +D+ DNDG+  L+LAAQ+GH  LVE  LEQ+ A ++Q +HDG+TALR     +  L   Y
Sbjct: 908  IDETDNDGKGALMLAAQEGHAALVERLLEQHRAPIDQHAHDGKTALR-----LAALEGHY 962

Query: 756  LLIQPLLNIIL----------SSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIIS 805
              ++ LL+             S+L+ L +E+          H +R + + R    R  + 
Sbjct: 963  DTVRVLLSHNADVNAKDADGRSTLYILALENRLAMARFLLEH-ARADVESRDSEGRTPLH 1021

Query: 806  I-ANNEHIILFHHSFSEWLLDVKHCTKRYLCSLN----DGHLIHAVDLSQRRQTSSSSAV 860
            + A   H+ +     +E    V  C       L+     GH                +A+
Sbjct: 1022 VSAWQGHVEMVALLLTEGSASVNACDNENRTPLHSAAWQGH----------------AAI 1065

Query: 861  PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAF 920
                 EH +   H     G++ +G    IAAQEGHE CVR LL++GADP HSDHCGRNA 
Sbjct: 1066 VRLLLEHGATPDHT-CNQGATALG----IAAQEGHEHCVRALLNHGADPSHSDHCGRNAI 1120

Query: 921  RVAAKSGHETVLRLLKQYA 939
            +VAAKSGH+TV+RLL++++
Sbjct: 1121 KVAAKSGHDTVVRLLEEHS 1139

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479528|ref|XP_001607344.2| PREDICTED: ankyrin repeat domain-containing protein 50 isoform 1 [Nasonia vitripennis] gi|345479530|ref|XP_003423968.1| PREDICTED: ankyrin repeat domain-containing protein 50 isoform 2 [Nasonia vitripennis]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 323/631 (51%), Positives = 404/631 (64%), Gaps = 89/631 (14%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  ++VLH L A+ N  LL    ++     LE  D+HGQTALN+AA  G+ D V+
Sbjct: 691  INQTDSCGRTVLHNLAADGNATLLALASEAYPTAKLEATDRHGQTALNLAARHGYSDVVK 750

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL AGAN++H DC+GWT LR+A+WGGH+ VV+ LL+ GA V+C+D   RTALRAAAWGG
Sbjct: 751  VLLTAGANVDHADCDGWTALRAAAWGGHTKVVEQLLECGAMVDCADWDQRTALRAAAWGG 810

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H E+         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 811  HEEI---------VKALLQHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 861

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            D+DGRTALSV+ALCVPS+ GY KVVS+LLE+GA V+H+D++GMTPLLVAAFEGHRDVCE+
Sbjct: 862  DSDGRTALSVAALCVPSNHGYTKVVSLLLERGADVNHQDKDGMTPLLVAAFEGHRDVCEL 921

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D +GRTPLWAAASMGH S VALLLFWG YVD+ID EGRTVLSVAAAQG 
Sbjct: 922  LLEYEADVDHCDATGRTPLWAAASMGHGSVVALLLFWGCYVDSIDNEGRTVLSVAAAQGG 981

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV+QLLDRG              LDEQHRDN GWTPLHYAA EGH++VC ALLEAGAK
Sbjct: 982  TDVVSQLLDRG--------------LDEQHRDNSGWTPLHYAAFEGHQDVCEALLEAGAK 1027

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR------------- 742
            +D+ DNDG+  L+LAAQ+GH  LVE  +EQ+ A ++Q +HDG+TALR             
Sbjct: 1028 IDEADNDGKGALMLAAQEGHTTLVERLIEQHLAPIDQHAHDGKTALRLAALEGHYDTVKV 1087

Query: 743  -------VNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKK 795
                   +N K+    S  Y+L   L N +  + F L             P I  ++ + 
Sbjct: 1088 LLSHNADINAKDADGRSILYILA--LENRLAMARFLL---------EQARPDIESRDSEG 1136

Query: 796  R--LHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQ 853
            R  LH+                    S W     H     L     G  ++A D   R  
Sbjct: 1137 RTALHV--------------------SAW---QGHVEMVALLLTEGGASVNARDNENRTP 1173

Query: 854  TSSS-----SAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGAD 908
              S+     +A+     EH +   H     G++ +G    IAAQEGHE CVR LL++GAD
Sbjct: 1174 LHSAAWQGHAAIVRLLLEHGATPDHT-CNQGATALG----IAAQEGHESCVRALLNHGAD 1228

Query: 909  PKHSDHCGRNAFRVAAKSGHETVLRLLKQYA 939
            P HSDHCGRNA +VAAKSGH+TV+RLL+++A
Sbjct: 1229 PNHSDHCGRNAIKVAAKSGHDTVVRLLEEHA 1259

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857196|ref|XP_003704091.1| PREDICTED: ankyrin repeat domain-containing protein 50 [Megachile rotundata]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 323/619 (52%), Positives = 407/619 (65%), Gaps = 65/619 (10%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  ++VLH L A+ N +LL+  L +C    LE  D+HGQT LN+AA  G+ D V+
Sbjct: 570  INQADSCGRTVLHTLAADGNASLLELALATCPQAKLEATDRHGQTPLNLAARHGYADVVR 629

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL AGA  +H DC+GWT LR+A+WGGH+ VV++LL+ GA V+C+D   RTALRAAAWGG
Sbjct: 630  VLLAAGACADHADCDGWTALRAAAWGGHTQVVEMLLEHGAMVDCADWDQRTALRAAAWGG 689

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 690  HEDI---------VKALLQHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 740

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            D+DGRTALSV+ALCVPS+ GYAKVV+ILLE+GA VDH+D++GMTPLLVAAFEGHRDVCE+
Sbjct: 741  DSDGRTALSVAALCVPSNHGYAKVVTILLERGAAVDHQDKDGMTPLLVAAFEGHRDVCEL 800

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D +GRTPLWAAASMGH S VALLLFWG YVD+ID EGRTVLSVAAAQG 
Sbjct: 801  LLEYEADVDHCDATGRTPLWAAASMGHGSVVALLLFWGCYVDSIDNEGRTVLSVAAAQGG 860

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLLDRG              LDEQHRDN GWTPLHYAA EGH +VC ALLEAGAK
Sbjct: 861  TDVVKQLLDRG--------------LDEQHRDNSGWTPLHYAAFEGHIDVCEALLEAGAK 906

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWY 755
            +D+ DNDG+  L+LAAQ+GH  LVE  LEQ+ A ++Q +HDG+TALR     V  L   Y
Sbjct: 907  IDETDNDGKGALMLAAQEGHATLVERLLEQHGAPIDQHAHDGKTALR-----VAALEGHY 961

Query: 756  LLIQPLL--NIIL--------SSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIIS 805
              ++ LL  N  +        S+L+ L +E+          H +R + + R    R  + 
Sbjct: 962  DTVRVLLAHNADVNAKDADGRSTLYILALENRLAMARFLLEH-ARADVESRDSEGRTPLH 1020

Query: 806  I-ANNEHIILFHHSFSEWLLDVKHCTKRYLCSLN----DGHLIHAVDLSQRRQTSSSSAV 860
            + A   H+ +     +E    V  C       L+     GH                +A+
Sbjct: 1021 VSAWQGHVEMVALLLTEGSASVNACDNENRTPLHSAAWQGH----------------AAI 1064

Query: 861  PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAF 920
                 EH +   H     G++ +G    IAAQEGHE CVR LL++GADP HSDHCGRNA 
Sbjct: 1065 VRLLLEHGATPDHT-CNQGATALG----IAAQEGHEHCVRALLNHGADPSHSDHCGRNAI 1119

Query: 921  RVAAKSGHETVLRLLKQYA 939
            +VAAKSGH+TV+RLL++++
Sbjct: 1120 KVAAKSGHDTVVRLLEEHS 1138

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179347|gb|EFN67711.1| Ankyrin repeat domain-containing protein 50 [Camponotus floridanus]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 317/616 (51%), Positives = 403/616 (65%), Gaps = 59/616 (9%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  ++VLH L A+ N +LL+  L +C    LE VD++GQT LN+AA  G+ D V+
Sbjct: 606  INQVDSYGRTVLHTLAADGNASLLELALAACPQAKLEAVDRNGQTPLNLAARHGYADVVR 665

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL AGA  +H DC+GWT LR+A+WGGH+ VV+ LL  GA V+C+D   RTALRAAAWGG
Sbjct: 666  VLLAAGARADHADCDGWTALRAAAWGGHTQVVEQLLTHGAMVDCADWDQRTALRAAAWGG 725

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 726  HEDI---------VKALLKHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 776

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            D+DGRTALSV+ALCVP++ GYAKVV+ILLE+GA VDHED++GMTPLLVAAFEGHRDVC++
Sbjct: 777  DSDGRTALSVAALCVPANHGYAKVVTILLERGATVDHEDKDGMTPLLVAAFEGHRDVCDL 836

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE +AD DH D +GRTPLWAAASMGH S V LLL+WG  VDTID EGRTVLSVAAAQG 
Sbjct: 837  LLEFDADMDHCDVTGRTPLWAAASMGHGSVVKLLLYWGCCVDTIDNEGRTVLSVAAAQGG 896

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLL RG              LDEQHRDN GWTPLHYAA EGH +VC ALLEAGAK
Sbjct: 897  TDVVKQLLARG--------------LDEQHRDNSGWTPLHYAAFEGHVDVCEALLEAGAK 942

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWY 755
            +D+ DNDG++ L+LAAQ+GH  LVE  LE + A ++Q +HDG+TALR     +  L   Y
Sbjct: 943  IDETDNDGKSALMLAAQEGHASLVERLLEHHGAPIDQHAHDGKTALR-----LAALEGHY 997

Query: 756  LLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIAN------- 808
              ++ LL+            D+  K +     +     + RL + R ++  AN       
Sbjct: 998  NTVKILLS---------RNADVNAKDADGRSTLYILALENRLAMARFLLEHANADIESRD 1048

Query: 809  NEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSS-----SAVPSA 863
            +E     H   S W     H     L   + G  ++A D   R    S+     +A+   
Sbjct: 1049 SEGRTSLH--VSAW---QGHVEMVALLLTDGGASVNACDNENRTPLHSAAWQGHAAIVRL 1103

Query: 864  TDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVA 923
              EH +   H     G++ +G    IAAQEGHE CVR LL++GADP HSDHCGRNA +VA
Sbjct: 1104 FLEHGATPDHT-CNQGATALG----IAAQEGHEHCVRALLNHGADPNHSDHCGRNAIKVA 1158

Query: 924  AKSGHETVLRLLKQYA 939
            AKSGH+TV+RLL++++
Sbjct: 1159 AKSGHDTVVRLLEEHS 1174

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403662|ref|XP_003486868.1| PREDICTED: ankyrin repeat domain-containing protein 50-like isoform 1 [Bombus impatiens]

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 312/642 (48%), Positives = 390/642 (60%), Gaps = 111/642 (17%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  Q+VLH L A+ N +LL+  L +C    LE  D+HGQT LN+AA  G+ D V+
Sbjct: 571  INQADSCGQTVLHTLAADGNASLLELALTTCPQAKLEATDRHGQTPLNLAARHGYADVVR 630

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL +GA  +H DC+GWT LR+A+WGGH+ VV++LL+ GA V+C+D   RTALRAAAWGG
Sbjct: 631  VLLASGACADHADCDGWTALRAAAWGGHTEVVEMLLEHGAMVDCADWDQRTALRAAAWGG 690

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 691  HEDI---------VKALLQHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 741

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            DNDGRTALSV+ALCVPS+ GYAKVV+ILLE+GA VDH+D++GMTPLLVAAFEGH+DVCE+
Sbjct: 742  DNDGRTALSVAALCVPSNHGYAKVVTILLERGAAVDHQDKDGMTPLLVAAFEGHKDVCEL 801

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D +GRTPLWAAASMGH S V+LLLFWG YVD+ID EGRTVLSVAAAQG 
Sbjct: 802  LLEYEADVDHCDATGRTPLWAAASMGHGSVVSLLLFWGCYVDSIDNEGRTVLSVAAAQGG 861

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLL+RG              LDEQHRDN GWTPLHYAA EGH +VC ALLEAGAK
Sbjct: 862  TDVVKQLLNRG--------------LDEQHRDNSGWTPLHYAAFEGHIDVCEALLEAGAK 907

Query: 696  VDQVDNDG-----------------------RAP-----------LILAAQDGHYHLVEM 721
            +D+ DNDG                       RAP           L LAA +GHY  V +
Sbjct: 908  IDETDNDGKGALMLAAQEGHAALLERLLEQHRAPIDQHAHDGKTALRLAALEGHYDTVRV 967

Query: 722  FLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKF 781
             L          SH+      VN K+    S  Y+L   L N +  + F L       + 
Sbjct: 968  LL----------SHNAD----VNAKDADGRSTLYILA--LENRLAMARFLL-------EH 1004

Query: 782  STTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLN--- 838
            +  +      E +  LH+       A   H+ +     +E    V  C       L+   
Sbjct: 1005 ARADVESRDSEGRTPLHV------SAWQGHVEMVALLLTEGSASVNACDNEKRTPLHSAA 1058

Query: 839  -DGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHED 897
              GH                +A+     EH +   H     G++ +G    IAAQEGHE 
Sbjct: 1059 WQGH----------------AAIVRLLLEHGATPDHT-CNQGATALG----IAAQEGHEH 1097

Query: 898  CVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYA 939
            CVR LL++GADP HSDHCGRNA +VAAKSGH+TV+RLL++++
Sbjct: 1098 CVRALLNHGADPSHSDHCGRNAIKVAAKSGHDTVVRLLEEHS 1139

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403665|ref|XP_003486869.1| PREDICTED: ankyrin repeat domain-containing protein 50-like isoform 2 [Bombus impatiens]

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 312/642 (48%), Positives = 390/642 (60%), Gaps = 111/642 (17%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            I   DS  Q+VLH L A+ N +LL+  L +C    LE  D+HGQT LN+AA  G+ D V+
Sbjct: 571  INQADSCGQTVLHTLAADGNASLLELALTTCPQAKLEATDRHGQTPLNLAARHGYADVVR 630

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL +GA  +H DC+GWT LR+A+WGGH+ VV++LL+ GA V+C+D   RTALRAAAWGG
Sbjct: 631  VLLASGACADHADCDGWTALRAAAWGGHTEVVEMLLEHGAMVDCADWDQRTALRAAAWGG 690

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         VK LL  GA VN  D EGRTALIA+AYMGH++IV  +L++ A+I+  
Sbjct: 691  HEDI---------VKALLQHGADVNRTDDEGRTALIAAAYMGHSEIVEHLLDFGAEIDHA 741

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            DNDGRTALSV+ALCVPS+ GYAKVV+ILLE+GA VDH+D++GMTPLLVAAFEGH+DVCE+
Sbjct: 742  DNDGRTALSVAALCVPSNHGYAKVVTILLERGAAVDHQDKDGMTPLLVAAFEGHKDVCEL 801

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D +GRTPLWAAASMGH S V+LLLFWG YVD+ID EGRTVLSVAAAQG 
Sbjct: 802  LLEYEADVDHCDATGRTPLWAAASMGHGSVVSLLLFWGCYVDSIDNEGRTVLSVAAAQGG 861

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLL+RG              LDEQHRDN GWTPLHYAA EGH +VC ALLEAGAK
Sbjct: 862  TDVVKQLLNRG--------------LDEQHRDNSGWTPLHYAAFEGHIDVCEALLEAGAK 907

Query: 696  VDQVDNDG-----------------------RAP-----------LILAAQDGHYHLVEM 721
            +D+ DNDG                       RAP           L LAA +GHY  V +
Sbjct: 908  IDETDNDGKGALMLAAQEGHAALLERLLEQHRAPIDQHAHDGKTALRLAALEGHYDTVRV 967

Query: 722  FLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKF 781
             L          SH+      VN K+    S  Y+L   L N +  + F L       + 
Sbjct: 968  LL----------SHNAD----VNAKDADGRSTLYILA--LENRLAMARFLL-------EH 1004

Query: 782  STTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLN--- 838
            +  +      E +  LH+       A   H+ +     +E    V  C       L+   
Sbjct: 1005 ARADVESRDSEGRTPLHV------SAWQGHVEMVALLLTEGSASVNACDNEKRTPLHSAA 1058

Query: 839  -DGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHED 897
              GH                +A+     EH +   H     G++ +G    IAAQEGHE 
Sbjct: 1059 WQGH----------------AAIVRLLLEHGATPDHT-CNQGATALG----IAAQEGHEH 1097

Query: 898  CVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYA 939
            CVR LL++GADP HSDHCGRNA +VAAKSGH+TV+RLL++++
Sbjct: 1098 CVRALLNHGADPSHSDHCGRNAIKVAAKSGHDTVVRLLEEHS 1139

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238284|ref|XP_968972.2| PREDICTED: similar to CG10011 CG10011-PA [Tribolium castaneum]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 300/605 (49%), Positives = 377/605 (62%), Gaps = 71/605 (11%)

Query: 371  LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
             +L D HGQ AL+VAA  G    V++LLEAGAN +  D +GWTPLR+A+WGGH+ VV+LL
Sbjct: 641  FDLHDLHGQAALHVAARLGQAQVVKVLLEAGANADQADVDGWTPLRAAAWGGHTEVVELL 700

Query: 431  LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490
            ++ G  ++  D   RTALRAAAW GH E+         VK+LL  GA+VN  D EGRTAL
Sbjct: 701  VEHGCALDSVDAENRTALRAAAWSGHEEI---------VKILLQHGANVNLTDHEGRTAL 751

Query: 491  IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
            IA+AYMGH++IV  +L+Y AD+N  D DGRTALSV+ALC P + G   VVS LLE+GA V
Sbjct: 752  IAAAYMGHSEIVEHLLDYGADVNHADADGRTALSVAALCAPRTPG-VNVVSTLLERGATV 810

Query: 551  DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
            DH D+EGMTPLLVA+FEGH+DVCE+LLENEAD DH D SGR+PLWAAASMGHA  VALLL
Sbjct: 811  DHRDKEGMTPLLVASFEGHKDVCELLLENEADVDHCDHSGRSPLWAAASMGHAPVVALLL 870

Query: 611  FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
            FWG  +D++D EGRTVLSVAAAQG ++VV QLLDRG              LDEQHRDN G
Sbjct: 871  FWGCCIDSMDGEGRTVLSVAAAQGCVEVVRQLLDRG--------------LDEQHRDNSG 916

Query: 671  WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
            WTPLHYAA EGH++VC ALLEAGA++D+ DN+G+APL LAAQ GH  LV MFL++Y A +
Sbjct: 917  WTPLHYAAFEGHQDVCEALLEAGARIDETDNEGKAPLALAAQGGHAALVSMFLDKYNAPI 976

Query: 731  NQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLN----------IILSSLFPLTVEDLFTK 780
            +Q+ HDG+TALR     +  L   Y ++Q L               S+L+ L +++    
Sbjct: 977  DQRPHDGKTALR-----LAALEGHYEVVQLLTTHGADIDSKDADGRSTLYVLALDNRLA- 1030

Query: 781  FSTTNPHISRQEYKKRLHILRKIISIANNEHIILF--HHSFSEWLLDVKHCTKRYLCSLN 838
                   +S+   ++R  +  + +      H+  +  H      LL    C         
Sbjct: 1031 -------MSKYFIQQRADVETRDLEGRTPLHVSSWQGHTEMVSLLLTYGKCQ-------- 1075

Query: 839  DGHLIHAVDLSQRRQTSSS-----SAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQE 893
                + A DL  R    S+     S +     EH +   H     G++ +G    IAAQE
Sbjct: 1076 ----VDACDLENRTALHSASWQGHSDIVKLLLEHGALPDHT-CNQGATALG----IAAQE 1126

Query: 894  GHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYN 953
            GHE CV  LL +GADP HSD CGRNA RVAAKSGH  V+RLL++Y   S    H     N
Sbjct: 1127 GHELCVVALLEHGADPNHSDACGRNALRVAAKSGHRGVVRLLEEYNARSHKMAHTSSSAN 1186

Query: 954  SAKSG 958
            S  S 
Sbjct: 1187 SITSA 1191

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012557|ref|XP_002426999.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis] gi|212511228|gb|EEB14261.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/428 (60%), Positives = 321/428 (75%), Gaps = 28/428 (6%)

Query: 336  ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
            ++  DS  ++ +H L  E N  LL   L +    +LE+ D+HGQTALN+AA  G++D ++
Sbjct: 886  VSSVDSVGRTTIHTLAGEGNATLLNLILSTYPETNLEVEDRHGQTALNLAARHGYLDVIE 945

Query: 396  ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            +LL AGA+ NH+DCEGWT LR+A+WGGH+ VV+LLL+ GADV+ +D   RTALRAAAWGG
Sbjct: 946  VLLTAGADCNHSDCEGWTALRAAAWGGHTPVVELLLKHGADVDVADSDQRTALRAAAWGG 1005

Query: 456  HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
            H ++         V+LL+A  A+VN  D EGRTALIA++YMGH++IV  +L+  A+I+ Q
Sbjct: 1006 HEDI---------VELLVAHKANVNQTDDEGRTALIAASYMGHSEIVEHLLDNGAEIDHQ 1056

Query: 516  DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            D DGRTALSV+AL VP+++GYAKVV+ILLEKGA VDH+D++GMTPLLVAAFEGHRDVCE+
Sbjct: 1057 DADGRTALSVAALYVPNNEGYAKVVNILLEKGASVDHQDKDGMTPLLVAAFEGHRDVCEL 1116

Query: 576  LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
            LLE EAD DH D SGRTPLWAAASMGH+S V LLLFWG YVD+ID EGRTVLS+AAAQGN
Sbjct: 1117 LLEYEADVDHSDNSGRTPLWAAASMGHSSVVELLLFWGCYVDSIDNEGRTVLSIAAAQGN 1176

Query: 636  IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
             DVV QLLDRG              LDEQHRDN GWTPLHYA  EGH EVC ALLEAGAK
Sbjct: 1177 TDVVRQLLDRG--------------LDEQHRDNSGWTPLHYATFEGHIEVCEALLEAGAK 1222

Query: 696  VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWY 755
            VD+ DNDG+ PL+LAAQ+GH  LVE  L  + A  +Q++HDG+TALR     +  L   Y
Sbjct: 1223 VDEPDNDGKGPLMLAAQEGHGLLVETLLRVHNAPPDQRAHDGKTALR-----LAALEGHY 1277

Query: 756  LLIQPLLN 763
             +++ LLN
Sbjct: 1278 DVVRILLN 1285

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	978
FB|FBgn0039590	2119	CG10011 [Drosophila melanogast	0.385	0.177	0.516	1.2e-161
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.342	0.325	0.412	7.2e-58
WB|WBGene00012124	991	T28D6.4 [Caenorhabditis elegan	0.394	0.389	0.341	2.4e-51
UNIPROTKB|F1NP45	1341	TANC2 "Uncharacterized protein	0.314	0.229	0.360	4.7e-51
UNIPROTKB|Q9HCD6	1990	TANC2 "Protein TANC2" [Homo sa	0.314	0.154	0.360	6.3e-51
UNIPROTKB|F1RRV1	1916	TANC2 "Uncharacterized protein	0.314	0.160	0.360	1.2e-50
UNIPROTKB|F1MSK0	1989	TANC2 "Uncharacterized protein	0.314	0.154	0.360	1.3e-50
UNIPROTKB|F1LTE0	1922	Tanc2 "Protein Tanc2" [Rattus	0.314	0.160	0.363	1.5e-50
RGD|1309285	1932	Tanc2 "tetratricopeptide repea	0.314	0.159	0.363	1.5e-50
MGI|MGI:2444121	1994	Tanc2 "tetratricopeptide repea	0.314	0.154	0.360	2.9e-50

FB|FBgn0039590 CG10011 [Drosophila melanogaster (taxid:7227)]

 Score = 1048 (374.0 bits), Expect = 1.2e-161, Sum P(5) = 1.2e-161
 Identities = 215/416 (51%), Positives = 287/416 (68%)

Query:   342 KNQSVLHKLCAENNINLLKTFLKSCEA-LDLELVDKHGQTALNVAAHQGFVDAVQILLE- 399
             K ++++H L  + N  LL+  L +C++ +DLE+ D +GQTALN+AA  G ++ V++LL  
Sbjct:  1234 KGKALIHILANDGNHQLLERALNACKSPIDLEIEDYNGQTALNIAARNGHLEVVKLLLSF 1293

Query:   400 -------AG----ANINHTDCEGWTPLRSASWGGHSAVVKLLL-QSGADVNCSDMGGRTA 447
                     G     ++NH D +GWTPLRSASWGGHS VV+LL+ Q    ++ +D  GRTA
Sbjct:  1294 SQPCNDGTGRMKRVDVNHADRDGWTPLRSASWGGHSEVVRLLIAQPACKIDLADKEGRTA 1353

Query:   448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILE 507
             LRAAAW GH ++         +KLL+ +GA VN+ D +GRT+LIA++YMGH DIV  +LE
Sbjct:  1354 LRAAAWSGHEDI---------LKLLIESGADVNSVDRQGRTSLIAASYMGHYDIVEILLE 1404

Query:   508 YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE 567
               A++N  D DGR+AL V+ALC   S GY+KV+S LL+ GA  D  D +GM+PLLV++FE
Sbjct:  1405 NGANVNHLDLDGRSALCVAALC--GSSGYSKVISTLLDHGANTDQLDNDGMSPLLVSSFE 1462

Query:   568 GHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL 627
             G+ +VCE+LLEN AD D  D  GRTPLWAA + GHA+ V LLLFWG  +D +D+EGRTVL
Sbjct:  1463 GNAEVCELLLENAADPDLADFMGRTPLWAACTAGHATVVKLLLFWGCGIDCMDSEGRTVL 1522

Query:   628 SVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687
             S+ AAQGN++ V QLLDRG              LDE HRDN GWTPLHYAA EG  EVC 
Sbjct:  1523 SIGAAQGNVETVRQLLDRG--------------LDETHRDNAGWTPLHYAAFEGFHEVCL 1568

Query:   688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
              LLE+GAK+D+ DN+G+  L LAAQ+G  H V+  L+ + + V+QK+HDG+TA R+
Sbjct:  1569 QLLESGAKIDECDNEGKTALHLAAQEGRLHCVQALLDIHSSFVDQKAHDGKTAFRL 1624

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 568 (205.0 bits), Expect = 7.2e-58, Sum P(2) = 7.2e-58
 Identities = 150/364 (41%), Positives = 199/364 (54%)

Query:   378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
             GQT ++ AA +G    V++LL  GA  +     G TPL  A++ GH +VV+L L+ GA  
Sbjct:   673 GQTPISYAASKGHESVVRLLLTHGAQADSKANWGQTPLSRAAFDGHESVVRLFLEHGAQA 732

Query:   438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
             +C D  G T L +AA  GH  V         V+LLL  GA  ++ D + RT L  +A  G
Sbjct:   733 DCKDGDGGTPLSSAAATGHESV---------VRLLLKHGAQADSKDDDCRTPLSYAASNG 783

Query:   498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
             +  +V  +LE+ A  + +D+D RT LS +A     S GY  VV +LLE GA+ D +D++ 
Sbjct:   784 YESVVKLLLEHGARADSKDDDFRTPLSYAA-----SYGYESVVKLLLEHGARTDSKDKDS 838

Query:   558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD 617
              TPL  AA  G+  V  ILLEN A  +  DK   TPL  AAS GH S V LLL +GA  D
Sbjct:   839 QTPLSYAASRGYESVVRILLENGARANSRDKDSHTPLSYAASKGHESVVRLLLQYGAQAD 898

Query:   618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYA 677
             +  + G+T LS AA+ G+  VV  LLD G          QT S     +D  GWTPL YA
Sbjct:   899 SETSSGQTPLSYAASHGHEFVVKLLLDHGA---------QTES-----KDKYGWTPLVYA 944

Query:   678 AIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDG 737
             AI G E   R LLE GA+ +  DN+   PL  AA  GH  +V + L+ + A  + K  +G
Sbjct:   945 AIWGQESAVRLLLEHGAEAELKDNESWTPLSYAALKGHESVVRLLLD-HGAQADSKHGNG 1003

Query:   738 RTAL 741
             RT L
Sbjct:  1004 RTPL 1007

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00012124 T28D6.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 498 (180.4 bits), Expect = 2.4e-51, Sum P(4) = 2.4e-51
 Identities = 144/422 (34%), Positives = 210/422 (49%)

Query:   323 VSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTAL 382
             V D P +    S     +  N  V++  C+  +++ L   L+  + + +++        L
Sbjct:   375 VIDLPTTALLKSAGARMEENNYDVVYA-CSVGDVSYLDAILREMKPVPMDIC-----FGL 428

Query:   383 NVAAHQGFVDAVQILLEAGANINHTDCEG-WTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
               AA +G ++  + L +   ++  + C G W  LRSA+  G   ++ LLL+ G DV+   
Sbjct:   429 LTAAARGNIEMCRFLADHFPHLVASSCCGEWNALRSAACYGQLEILHLLLEKGVDVDECG 488

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
                RTALRAAAW G L           V+LLL  GA V+  DSE RTAL+A+A+M H D+
Sbjct:   489 HSDRTALRAAAWSGQL---------AAVQLLLQTGAEVDRRDSEQRTALMAAAFMCHKDV 539

Query:   502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
             VS I++Y AD+N  D  G TAL ++       +  ++   +LLE  A    ED  G   L
Sbjct:   540 VSVIIQYGADVNAIDKSGATALHLNLSNGSKQEENSETTKLLLEHNADCKIEDANGRVAL 599

Query:   562 LVAAFEGHRDVC-EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG-AYVDTI 619
              +AA+ G  D C +++LE     D +D  G+TPL  AAS G    V  L     A VD I
Sbjct:   600 HLAAYHG--DPCLQLILEKHPIVDVMDNMGQTPLMLAASQGQLEAVQFLTKTAKADVDAI 657

Query:   620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
             D  GRT L  AA  G+ +VV  L        C  G       DE H+DN G   LHYA  
Sbjct:   658 DNNGRTALQWAAINGHPEVVEFL--------CSVGS------DEGHKDNDGAVALHYAVT 703

Query:   680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
               H E+ + L      V+  D  G+ P+++AA +G+  ++E +L      +NQ  H+GRT
Sbjct:   704 HDHVELVKHLTNQHT-VEAKDRYGQHPMMIAAANGNLKVLE-YLMGISDIINQPDHEGRT 761

Query:   740 AL 741
             AL
Sbjct:   762 AL 763

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|F1NP45 TANC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 405 (147.6 bits), Expect = 4.7e-51, Sum P(3) = 4.7e-51
 Identities = 120/333 (36%), Positives = 169/333 (50%)

Query:   382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
             L V +H G+ + V +LLE GAN++     G TPL  A+  G  ++V LL +  A V+  D
Sbjct:   811 LCVQSHLGYTEMVALLLEFGANVDAASESGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLD 870

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG--RTALIASAYMGHA 499
               G+ AL  AA  GHLEV   L   C   +   AG            + ALIA+A MG+ 
Sbjct:   871 KNGQCALVHAALRGHLEVVKFLIQ-CDWSM---AGQQQGVFKKSHAIQQALIAAASMGYT 926

Query:   500 DIVSSILEY----DADINQ-QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             +IVS +L+     + ++ + Q N   +    +AL   +  G   V  +LLE+GA V   +
Sbjct:   927 EIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLDVCRLLLEQGAAVAQPN 986

Query:   555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             R G+ PL  A  +GH  + ++LL + AD +  DK GRTPL  AAS GH   V  LL  GA
Sbjct:   987 RRGVVPLFSAVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVEFLLAQGA 1046

Query:   615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
              +  +D EG T LS A  +G++ VV  L++ G             + D  H D  G TPL
Sbjct:  1047 SISLMDKEGLTALSWACLKGHLAVVRALVENG------------AATD--HADKNGRTPL 1092

Query:   675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
               AA  G  EV + L++ GA ++ VD  G  PL
Sbjct:  1093 DLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPL 1125

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|Q9HCD6 TANC2 "Protein TANC2" [Homo sapiens (taxid:9606)]

 Score = 408 (148.7 bits), Expect = 6.3e-51, Sum P(3) = 6.3e-51
 Identities = 120/333 (36%), Positives = 170/333 (51%)

Query:   382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
             L V +H G+ + V +LLE GAN++ +   G TPL  A+  G+ ++V LL +  A V+  D
Sbjct:   889 LCVQSHLGYTEMVALLLEFGANVDASSESGLTPLGYAAAAGYLSIVVLLCKKRAKVDHLD 948

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG--RTALIASAYMGHA 499
               G+ AL  AA  GHLEV   L   C   +   AG            + ALIA+A MG+ 
Sbjct:   949 KNGQCALVHAALRGHLEVVKFLIQ-CDWTM---AGQQQGVFKKSHAIQQALIAAASMGYT 1004

Query:   500 DIVSSILEY----DADINQ-QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             +IVS +L+     + ++ + Q N   +    +AL   +  G  +V  +LLE+GA V   +
Sbjct:  1005 EIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLEVCRLLLEQGAAVAQPN 1064

Query:   555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             R G  PL     +GH  + ++LL + AD +  DK GRTPL  AAS GH   V  LL  GA
Sbjct:  1065 RRGAVPLFSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGA 1124

Query:   615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
              +  +D EG T LS A  +G++ VV  L+D G             + D  H D  G TPL
Sbjct:  1125 SIALMDKEGLTALSWACLKGHLSVVRSLVDNG------------AATD--HADKNGRTPL 1170

Query:   675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
               AA  G  EV + L++ GA ++ VD  G  PL
Sbjct:  1171 DLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPL 1203

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1RRV1 TANC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 405 (147.6 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
 Identities = 120/333 (36%), Positives = 169/333 (50%)

Query:   382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
             L V +H G+ + V +LLE GAN++ +   G TPL  A+  G  ++V LL +  A V+  D
Sbjct:   818 LCVQSHLGYTEMVALLLEFGANVDASSESGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLD 877

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG--RTALIASAYMGHA 499
               G+ AL  AA  GHLEV   L   C   +   AG            + ALIA+A MG+ 
Sbjct:   878 KNGQCALVHAALRGHLEVVKFLIQ-CDWTM---AGQQQGVFKKSHAIQQALIAAASMGYT 933

Query:   500 DIVSSILEY----DADINQ-QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             +IVS +L+     + ++ + Q N   +    +AL   +  G  +V  +LLE+GA V   +
Sbjct:   934 EIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLEVCRLLLEQGAAVAQPN 993

Query:   555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             R G  PL     +GH  + ++LL + AD +  DK GRTPL  AAS GH   V  LL  GA
Sbjct:   994 RRGAVPLFSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGA 1053

Query:   615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
              +  +D EG T LS A  +G++ VV  L+D G             + D  H D  G TPL
Sbjct:  1054 SIALMDKEGLTALSWACLKGHLSVVRSLVDNG------------AATD--HADKNGRTPL 1099

Query:   675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
               AA  G  EV + L++ GA ++ VD  G  PL
Sbjct:  1100 DLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPL 1132

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1MSK0 TANC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 405 (147.6 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
 Identities = 120/333 (36%), Positives = 169/333 (50%)

Query:   382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
             L V +H G+ + V +LLE GAN++ +   G TPL  A+  G  ++V LL +  A V+  D
Sbjct:   889 LCVQSHLGYTEMVALLLEFGANVDASSESGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLD 948

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG--RTALIASAYMGHA 499
               G+ AL  AA  GHLEV   L   C   +   AG            + ALIA+A MG+ 
Sbjct:   949 KNGQCALVHAALRGHLEVVKFLIQ-CDWTM---AGQQQGVFKKSHAIQQALIAAASMGYT 1004

Query:   500 DIVSSILEY----DADINQ-QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             +IVS +L+     + ++ + Q N   +    +AL   +  G  +V  +LLE+GA V   +
Sbjct:  1005 EIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLEVCRLLLEQGAAVAQPN 1064

Query:   555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             R G  PL     +GH  + ++LL + AD +  DK GRTPL  AAS GH   V  LL  GA
Sbjct:  1065 RRGAVPLFSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGA 1124

Query:   615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
              +  +D EG T LS A  +G++ VV  L+D G             + D  H D  G TPL
Sbjct:  1125 SIALMDKEGLTALSWACLKGHLSVVRSLVDNG------------AATD--HADKNGRTPL 1170

Query:   675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
               AA  G  EV + L++ GA ++ VD  G  PL
Sbjct:  1171 DLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPL 1203

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1LTE0 Tanc2 "Protein Tanc2" [Rattus norvegicus (taxid:10116)]

 Score = 405 (147.6 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
 Identities = 121/333 (36%), Positives = 170/333 (51%)

Query:   382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
             L V +H G+ + V +LLE GAN++ +   G TPL  A+  G  ++V LL +  A V+  D
Sbjct:   819 LCVQSHLGYTEMVALLLEFGANVDASSESGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLD 878

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA-ADSEG-RTALIASAYMGHA 499
               G+ AL  AA  GHLEV   L   C   +   AG        S+  + ALIA+A MG+ 
Sbjct:   879 KNGQCALVHAALRGHLEVVKFLIQ-CDWTM---AGQQQGVFKKSQAIQQALIAAASMGYT 934

Query:   500 DIVSSILEY----DADINQ-QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             +IVS +L+     + ++ + Q N   +    +AL   +  G   V  +LLE+GA V   +
Sbjct:   935 EIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLDVCRLLLEQGAAVAQPN 994

Query:   555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             R G  PL     +GH  + ++LL + AD +  DK GRTPL  AAS GH   V  LL  GA
Sbjct:   995 RRGAVPLFSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGA 1054

Query:   615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
              +  +D EG T LS A  +G++ VV  L+D G             + D  H D  G TPL
Sbjct:  1055 SIALMDKEGLTALSWACLKGHLSVVRSLVDNG------------AATD--HADKNGRTPL 1100

Query:   675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
               AA  G  EV + L++ GA ++ VD  G  PL
Sbjct:  1101 DLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPL 1133

GO:0001701 "in utero embryonic development" evidence=IEA

RGD|1309285 Tanc2 "tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 405 (147.6 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
 Identities = 121/333 (36%), Positives = 170/333 (51%)

Query:   382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
             L V +H G+ + V +LLE GAN++ +   G TPL  A+  G  ++V LL +  A V+  D
Sbjct:   819 LCVQSHLGYTEMVALLLEFGANVDASSESGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLD 878

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA-ADSEG-RTALIASAYMGHA 499
               G+ AL  AA  GHLEV   L   C   +   AG        S+  + ALIA+A MG+ 
Sbjct:   879 KNGQCALVHAALRGHLEVVKFLIQ-CDWTM---AGQQQGVFKKSQAIQQALIAAASMGYT 934

Query:   500 DIVSSILEY----DADINQ-QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             +IVS +L+     + ++ + Q N   +    +AL   +  G   V  +LLE+GA V   +
Sbjct:   935 EIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLDVCRLLLEQGAAVAQPN 994

Query:   555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             R G  PL     +GH  + ++LL + AD +  DK GRTPL  AAS GH   V  LL  GA
Sbjct:   995 RRGAVPLFSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGA 1054

Query:   615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
              +  +D EG T LS A  +G++ VV  L+D G             + D  H D  G TPL
Sbjct:  1055 SIALMDKEGLTALSWACLKGHLSVVRSLVDNG------------AATD--HADKNGRTPL 1100

Query:   675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
               AA  G  EV + L++ GA ++ VD  G  PL
Sbjct:  1101 DLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPL 1133

GO:0001701 "in utero embryonic development" evidence=ISO

MGI|MGI:2444121 Tanc2 "tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2" [Mus musculus (taxid:10090)]

 Score = 403 (146.9 bits), Expect = 2.9e-50, Sum P(3) = 2.9e-50
 Identities = 120/333 (36%), Positives = 168/333 (50%)

Query:   382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
             L V +H G+ + V +LLE GAN++ +   G TPL  A+  G  ++V LL +  A V+  D
Sbjct:   889 LCVQSHLGYTEMVALLLEFGANVDASSESGLTPLGYAAAAGFLSIVVLLCKKRAKVDHLD 948

Query:   442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG--RTALIASAYMGHA 499
               G+ AL  AA  GHLEV   L   C   +   AG            + ALIA+A MG+ 
Sbjct:   949 KNGQCALVHAALRGHLEVVKFLIQ-CDWTM---AGQQQGVFKKSHAIQQALIAAASMGYT 1004

Query:   500 DIVSSILEY----DADINQ-QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             +IVS +L+     + ++ + Q N   +    +AL   +  G   V  +LLE+GA V   +
Sbjct:  1005 EIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLDVCRLLLEQGAAVAQPN 1064

Query:   555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             R G  PL     +GH  + ++LL + AD +  DK GRTPL  AAS GH   V  LL  GA
Sbjct:  1065 RRGAVPLFSTVRQGHWQIVDLLLTHGADVNMADKQGRTPLMMAASEGHLGTVDFLLAQGA 1124

Query:   615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
              +  +D EG T LS A  +G++ VV  L+D G             + D  H D  G TPL
Sbjct:  1125 SIALMDKEGLTALSWACLKGHLSVVRSLVDNG------------AATD--HADKNGRTPL 1170

Query:   675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
               AA  G  EV + L++ GA ++ VD  G  PL
Sbjct:  1171 DLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPL 1203

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	978
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-25
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-20
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-17
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-15
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-14
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-14
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-08
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-07
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
smart00248	30	smart00248, ANK, ankyrin repeats	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	8e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-04
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	4e-04
PHA02795	437	PHA02795, PHA02795, ankyrin-like protein; Provisio	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	7e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.001
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.004
PHA02795	437	PHA02795, PHA02795, ankyrin-like protein; Provisio	0.004

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  131 bits (331), Expect = 3e-32
 Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 40/312 (12%)

Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC-VVKLLLAAGAHVNAADS 484
            V+ LL +GADVN     G+T L       HL +      +  +V+LLL AGA VNA + 
Sbjct: 29  EVRRLLAAGADVNFRGEYGKTPL-------HLYLHYSSEKVKDIVRLLLEAGADVNAPER 81

Query: 485 EGRTALIASAYMGHA---DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
            G T L    Y+ +A   D++  +++  AD+N +D  GRT L V  L   + +   KV+ 
Sbjct: 82  CGFTPLHL--YLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV-YLSGFNIN--PKVIR 136

Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC----EILLENEADQDHIDKSGRTPL--W 595
           +LL KGA V+  D  GMTPL  A     R+       +L++  AD   +D   R+ L   
Sbjct: 137 LLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHH 194

Query: 596 AAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID--VVNQLLDRGMILGCLA 653
             +    A  V  L+  G      D  G T L   A   +    +V  LL  G+      
Sbjct: 195 LQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI------ 248

Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                 S++   R+  G TPLHYAA+  +   CR L+  GA ++ V +DG  PL L  ++
Sbjct: 249 ------SINA--RNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRN 300

Query: 714 GHYHLVEMFLEQ 725
            +   V   L +
Sbjct: 301 NNGRAVRAALAK 312

Length = 471

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  120 bits (303), Expect = 5e-32
 Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 9/133 (6%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
            D+ G+T L++AA  G ++ V++LLE GA++N  D +G TPL  A+  GH  +VKLLL+ 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GADVN  D  G T L  AA  G+L+         VVKLLL  GA VNA D +GRT L  +
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLD---------VVKLLLKHGADVNARDKDGRTPLHLA 113

Query: 494 AYMGHADIVSSIL 506
           A  GH ++V  +L
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  119 bits (300), Expect = 1e-31
 Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 5/131 (3%)

Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
           N +D DGRT L ++A     S+G+ +VV +LLE GA V+ +D +G TPL +AA  GH ++
Sbjct: 1   NARDEDGRTPLHLAA-----SNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEI 55

Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
            ++LLE  AD +  DK G TPL  AA  G+   V LLL  GA V+  D +GRT L +AA 
Sbjct: 56  VKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK 115

Query: 633 QGNIDVVNQLL 643
            G+++VV  LL
Sbjct: 116 NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  118 bits (298), Expect = 3e-31
 Identities = 63/140 (45%), Positives = 75/140 (53%), Gaps = 14/140 (10%)

Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
           +  D +G TPL +AA  GH +V ++LLEN AD +  D  GRTPL  AA  GH   V LLL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
             GA V+  D +G T L +AA  GN+DVV  LL  G               D   RD  G
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG--------------ADVNARDKDG 106

Query: 671 WTPLHYAAIEGHEEVCRALL 690
            TPLH AA  GH EV + LL
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  118 bits (297), Expect = 4e-31
 Identities = 59/140 (42%), Positives = 81/140 (57%), Gaps = 14/140 (10%)

Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
           +  D+ GRTPL  AAS GH   V LLL  GA V+  D +GRT L +AA  G++++V  LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 644 DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG 703
           ++G  +                RD  G TPLH AA  G+ +V + LL+ GA V+  D DG
Sbjct: 61  EKGADV--------------NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106

Query: 704 RAPLILAAQDGHYHLVEMFL 723
           R PL LAA++GH  +V++ L
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  115 bits (289), Expect = 4e-30
 Identities = 65/140 (46%), Positives = 84/140 (60%), Gaps = 14/140 (10%)

Query: 405 NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLG 464
           N  D +G TPL  A+  GH  VVKLLL++GADVN  D  GRT L  AA  GHLE      
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLE------ 54

Query: 465 PLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALS 524
              +VKLLL  GA VNA D +G T L  +A  G+ D+V  +L++ AD+N +D DGRT L 
Sbjct: 55  ---IVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLH 111

Query: 525 VSALCVPSSDGYAKVVSILL 544
           ++A       G+ +VV +LL
Sbjct: 112 LAAKN-----GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  115 bits (289), Expect = 5e-30
 Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 14/140 (10%)

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
           N  D  GRT L  AA  GHLEV         VKLLL  GA VNA D++GRT L  +A  G
Sbjct: 1   NARDEDGRTPLHLAASNGHLEV---------VKLLLENGADVNAKDNDGRTPLHLAAKNG 51

Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
           H +IV  +LE  AD+N +D DG T L ++A      +G   VV +LL+ GA V+  D++G
Sbjct: 52  HLEIVKLLLEKGADVNARDKDGNTPLHLAA-----RNGNLDVVKLLLKHGADVNARDKDG 106

Query: 558 MTPLLVAAFEGHRDVCEILL 577
            TPL +AA  GH +V ++LL
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (261), Expect = 3e-26
 Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 11/134 (8%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D   ++ LH   +  ++ ++K  L++    D+   D  G+T L++AA  G ++ V++LLE
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            GA++N  D +G TPL  A+  G+  VVKLLL+ GADVN  D  GRT L  AA  GHLE 
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE- 120

Query: 460 TIVLGPLCVVKLLL 473
                   VVKLLL
Sbjct: 121 --------VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (251), Expect = 6e-25
 Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 15/125 (12%)

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
           +  D +GRT L +AA+ G+++VV  LL+ G               D   +DN G TPLH 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGA--------------DVNAKDNDGRTPLHL 46

Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
           AA  GH E+ + LLE GA V+  D DG  PL LAA++G+  +V++ L+ + A+VN +  D
Sbjct: 47  AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKD 105

Query: 737 GRTAL 741
           GRT L
Sbjct: 106 GRTPL 110

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  107 bits (268), Expect = 3e-24
 Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 24/287 (8%)

Query: 370 DLELVDKHGQTALNVAAHQGF---VDAVQILLEAGANINHTDCEGWTPLRS-ASWGGHSA 425
           D+    ++G+T L++  H       D V++LLEAGA++N  +  G+TPL           
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98

Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE 485
           V+KLL+++GADVN  D  GRT L     G ++          V++LLL  GA VNA D  
Sbjct: 99  VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINP-------KVIRLLLRKGADVNALDLY 151

Query: 486 GRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
           G T L  +  +   +    +L       AD+   D+  R+ L        S    A++V 
Sbjct: 152 GMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ---SFKPRARIVR 206

Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEG--HRDVCEILLENEADQDHIDKSGRTPL-WAAA 598
            L+  G      D  G TPL   A      R +   LL      +  ++ G+TPL +AA 
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV 266

Query: 599 SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
                +C  L+   GA ++ + ++G T LS+     N   V   L +
Sbjct: 267 FNNPRACRRLIAL-GADINAVSSDGNTPLSLMVRNNNGRAVRAALAK 312

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.6 bits (210), Expect = 9e-20
 Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 11/102 (10%)

Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
           L++AA  G ++ V++LLE GA++N    +  T L  A+  G+  +VKLLL+ GADVN  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
             G TAL  AA  G+LE         +VKLLL  GA +N  D
Sbjct: 59  KDGNTALHLAARNGNLE---------IVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.6 bits (210), Expect = 9e-20
 Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 11/102 (10%)

Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G+  +VKLLL+ GADVN  D    TAL  AA  G+LE+         VKLLL 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEI---------VKLLLE 49

Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
            GA VNA D +G TAL  +A  G+ +IV  +LE+ ADIN +D
Sbjct: 50  HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 92.8 bits (230), Expect = 3e-19
 Identities = 109/388 (28%), Positives = 179/388 (46%), Gaps = 53/388 (13%)

Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
           ++LLE GA++N  D    TP+  A+  G++ +V LLL  GADVN   +   + L  A   
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS 221

Query: 455 GHLEV---------TIVLGPLCVVK-----------LLLAAGAHVNAADSEGRTAL-IAS 493
            +++           I    L ++K           LL  AG  VN+ D    T L  AS
Sbjct: 222 KNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHAS 281

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY-AKVVSILLEKGAKVDH 552
                + +V  +LE  AD+N ++  G T L + A      +GY  + +  L+  GA V+ 
Sbjct: 282 QAPSLSRLVPKLLERGADVNAKNIKGETPLYLMA-----KNGYDTENIRTLIMLGADVNA 336

Query: 553 EDREGMTPLLVAA-FEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
            DR  +TPL  A+  + ++D+   LLE  A+ +  D   +TP+  AA   +   +  LL 
Sbjct: 337 ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD 396

Query: 612 WGAYVDTIDAEGRTVLSVAAAQGN-IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
           +GA ++ +  +  T L  A    N    V  L+DRG             +++ +++D   
Sbjct: 397 YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG------------ANVNSKNKDLS- 443

Query: 671 WTPLHYAAIEGHE-EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
            TPLHYA  +  + +V   LL+ GA V+ ++   + PL++A +   YH +   L  Y A 
Sbjct: 444 -TPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALE---YHGIVNILLHYGAE 499

Query: 730 VNQKSHDGRTALRVNMKNVTKLSFWYLL 757
           + + S     +L  NM      SF Y++
Sbjct: 500 L-RDSRVLHKSLNDNM-----FSFRYII 521

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 82.3 bits (204), Expect = 5e-19
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH      N+ L+K  L+     D+ L D    TAL++AA  G ++ V++LLE GA++N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA--DVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
            D +G T L  A+  G+  +VKLLL+ GAD+N  D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 17/107 (15%)

Query: 627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVC 686
           L +AA  GN+++V  LL++G  +                 D    T LH AA  G+ E+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV--------------NLGDTD--TALHLAARNGNLEIV 44

Query: 687 RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
           + LLE GA V+  D DG   L LAA++G+  +V++ LE + A++N K
Sbjct: 45  KLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLE-HGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 32/226 (14%)

Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCV---VKLLLAAGAHVNAA 482
           VVK+LL +GAD+N S     T L       H    I      V   VKLLL  GA+VNA 
Sbjct: 50  VVKILLDNGADINSSTKNNSTPL-------HYLSNIKYNLTDVKEIVKLLLEYGANVNAP 102

Query: 483 DSEGRTALI--ASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
           D+ G T L+   S       IV  +L+  A++N +++DG   L +    + S+    K++
Sbjct: 103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY---LESNKIDLKIL 159

Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600
            +L++KG  ++ ++R                    LL      +  D  G TPL  A   
Sbjct: 160 KLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 601 GHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
            +   V  LL  GA  + ++  G T L +A    N ++   LL+ G
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 82.2 bits (202), Expect = 2e-17
 Identities = 56/144 (38%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
            L L    H+ A D +GR  L ++A  G   IV  +L   AD+N +D DG T L ++AL 
Sbjct: 57  LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN 116

Query: 530 VPSSDGYAKVVSILLEKGAKVD---HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
               +G  +V  +LLE GA +D     D +G TPL  AA  G  D+ E+LLE  AD +  
Sbjct: 117 GNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR 176

Query: 587 DKSGRTPLWAAASMGHASCVALLL 610
           +  G T L  AA  G    V LLL
Sbjct: 177 NSYGVTALDPAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 82.2 bits (202), Expect = 2e-17
 Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 18/211 (8%)

Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
           +  +   L            + L  +      D  GR PL +AAS G    V LLL  GA
Sbjct: 38  KLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGA 97

Query: 615 YVDTIDAEGRTVLSVAAAQGN-----IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC 669
            V+  DA+G T L +AA  GN     I+V   LL+ G  L                RD  
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN-----------NLRDED 146

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
           G TPLH+AA+ G  ++   LLEAGA  +  ++ G   L  AA++G   LV++ L+  +  
Sbjct: 147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD--KGL 204

Query: 730 VNQKSHDGRTALRVNMKNVTKLSFWYLLIQP 760
                      +     +   +     LI  
Sbjct: 205 HLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 16/107 (14%)

Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L  AA  G+   V LLL  GA V+  D +  T L +AA  GN+++V  LL+ G       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHG------- 51

Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
                   D   +D  G T LH AA  G+ E+ + LLE GA ++  D
Sbjct: 52  -------ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
           G  ++V +LLEKGA V+  D    T L +AA  G+ ++ ++LLE+ AD +  DK G T L
Sbjct: 8   GNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTAL 65

Query: 595 WAAASMGHASCVALLLFWGAYVDTID 620
             AA  G+   V LLL  GA ++  D
Sbjct: 66  HLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 79.1 bits (194), Expect = 3e-16
 Identities = 62/161 (38%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
            + L    ++   D +G  PL SA+  G   +VKLLL SGADVN  D  G T L  AA  
Sbjct: 57  LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN 116

Query: 455 GHLEVTIVLGPLCVVKLLLAAGAH---VNAADSEGRTALIASAYMGHADIVSSILEYDAD 511
           G+       G + V KLLL AGA     N  D +G T L  +A  G ADIV  +LE  AD
Sbjct: 117 GNPP----EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD 172

Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
            N +++ G TAL  +A      +G  ++V +LL+KG  +  
Sbjct: 173 PNSRNSYGVTALDPAAK-----NGRIELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 16/107 (14%)

Query: 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILE 507
           L  AA  G+LE+         VKLLL  GA VN  D++  TAL  +A  G+ +IV  +LE
Sbjct: 1   LHLAAKNGNLEL---------VKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLE 49

Query: 508 YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
           + AD+N +D DG TAL ++A       G  ++V +LLE GA ++ +D
Sbjct: 50  HGADVNAKDKDGNTALHLAARN-----GNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           L +AA  G+ ++ ++LLE  AD +  D    T L  AA  G+   V LLL  GA V+  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRG 646
            +G T L +AA  GN+++V  LL+ G
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 78.9 bits (195), Expect = 3e-15
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 31/210 (14%)

Query: 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH-----RDVCEILLENEADQDHIDKSG 590
              VV ILL+ GA ++   +   TPL   +   +     +++ ++LLE  A+ +  D +G
Sbjct: 47  NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106

Query: 591 RTPLWAAAS--MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID--VVNQLLDRG 646
            TPL  A S      S V  LL  GA V+  +++G  +L +      ID  ++  L+D+G
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG 166

Query: 647 ------------MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
                       +  G          ++   +D  G+TPLHYA    + E  + LL+ GA
Sbjct: 167 VDINAKNRVNYLLSYGV--------PINI--KDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216

Query: 695 KVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
             + V+  G  PL +A  + +  + ++ L 
Sbjct: 217 NPNLVNKYGDTPLHIAILNNNKEIFKLLLN 246

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 79.2 bits (195), Expect = 3e-15
 Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 35/269 (13%)

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
           T L  A   G    V++ ++ GA+INH + +   PL +A   G   ++KLL+ +G D   
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD--- 93

Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCV----VKLLLAAGAHVNAADSEGRTALIASAY 495
                               T +L   C+    +K +L  G  VN  D+E +T L  +  
Sbjct: 94  --------------------TSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIK 133

Query: 496 MGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
            G  + +  + EY AD+N +D++G   + ++         +  ++ +LLEKGA  + +D 
Sbjct: 134 KGDLESIKMLFEYGADVNIEDDNGCYPIHIA-----IKHNFFDIIKLLLEKGAYANVKDN 188

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
            G +PL  AA  G     ++L+++     +  K+G TPL  A  + H      LL   A 
Sbjct: 189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA--IIHNRSAIELLINNAS 246

Query: 616 VDTIDAEGRTVLSVAAAQG-NIDVVNQLL 643
           ++  D +G T L  A     +ID+++ LL
Sbjct: 247 INDQDIDGSTPLHHAINPPCDIDIIDILL 275

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 78.9 bits (194), Expect = 3e-15
 Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 42/326 (12%)

Query: 387 HQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGR 445
           + G ++A++ +++   N IN +  E  TPL  A   G + +V+L ++ GAD+N  +    
Sbjct: 10  YSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIP 69

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
             L  A         I +G   ++KLL+      N  D    T+++    +   D++ +I
Sbjct: 70  HPLLTA---------IKIGAHDIIKLLI-----DNGVD----TSILPIPCI-EKDMIKTI 110

Query: 506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA 565
           L+   D+N +D + +T L  +        G  + + +L E GA V+ ED  G  P+ +A 
Sbjct: 111 LDCGIDVNIKDAELKTFLHYAI-----KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165

Query: 566 FEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRT 625
                D+ ++LLE  A  +  D +G +PL  AA  G  +C+ LL+  G ++      G T
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT 225

Query: 626 VLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYA-AIEGHEE 684
            L  A    N   +  L++   I                 +D  G TPLH+A       +
Sbjct: 226 PLHNAIIH-NRSAIELLINNASI---------------NDQDIDGSTPLHHAINPPCDID 269

Query: 685 VCRALLEAGAKVDQVDNDGRAPLILA 710
           +   LL   A +   DN G  P+  A
Sbjct: 270 IIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 77.4 bits (191), Expect = 8e-15
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 36/238 (15%)

Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA-----VVKLLLQSGADVNCSDMGGR 445
           +D V+ILL+ GA+IN +     TPL   S   ++      +VKLLL+ GA+VN  D  G 
Sbjct: 48  IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI 107

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD--IVS 503
           T L  A        +       +V+ LL  GA+VN  +S+G   L         D  I+ 
Sbjct: 108 TPLLYAI-------SKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILK 160

Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563
            +++   DIN ++                       V+ LL  G  ++ +D  G TPL  
Sbjct: 161 LLIDKGVDINAKNR----------------------VNYLLSYGVPINIKDVYGFTPLHY 198

Query: 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
           A +  + +  + LL+  A+ + ++K G TPL  A    +     LLL  G  + TI  
Sbjct: 199 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 77.6 bits (191), Expect = 2e-14
 Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 16/180 (8%)

Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
           H D    + L + +  G++A+++ LL++  D +  D  GRT L  AA  G+ +       
Sbjct: 520 HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYED------- 572

Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
            CV+ +LL    +V+  D+ G TAL  +    H  I   IL + A I+     G      
Sbjct: 573 -CVL-VLLKHACNVHIRDANGNTALWNAISAKHHKIFR-ILYHFASISDPHAAG------ 623

Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
             LC  +       +  LL++G  VD ED +G T L VA  E H D+  +L+ N AD D 
Sbjct: 624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
           LH AA  G+ E+ + LLE GA V+  D D    L LAA++G+  +V++ LE + A+VN K
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLE-HGADVNAK 57

Query: 734 SHDGRTAL 741
             DG TAL
Sbjct: 58  DKDGNTAL 65

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 74.3 bits (182), Expect = 8e-14
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 19/256 (7%)

Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
           Q AL  A   G +D  + LL+ G N N    +G +P++ A     S  +KLL++ GA  +
Sbjct: 3   QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD 62

Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN-AADSEGRTALIASAYMG 497
                  + L  A         +  G +  V+ LL  G   +     +G T L  +  + 
Sbjct: 63  VKYPDIESELHDA---------VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK 113

Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
             DI+  ++   AD +  + D  + L    L V   D   K + +L++  A +D ED  G
Sbjct: 114 KLDIMKLLIARGADPDIPNTDKFSPLH---LAVMMGD--IKGIELLIDHKACLDIEDCCG 168

Query: 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR-TPLWAAASMGHASCVALLLFWGA-- 614
            TPL++A  +G   +C++LL++ A+ D+  K+G    L  A        V L +  GA  
Sbjct: 169 CTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228

Query: 615 -YVDTIDAEGRTVLSV 629
             +  I+ E  T+L +
Sbjct: 229 NIMFMIEGEECTILDM 244

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 71.5 bits (175), Expect = 6e-13
 Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 35/287 (12%)

Query: 468 VVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527
           +V+L +  GA +N  +++    L+ +  +G  DI+  +++   D              S 
Sbjct: 50  IVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD-------------TSI 96

Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
           L +P       ++  +L+ G  V+ +D E  T L  A  +G  +  ++L E  AD +  D
Sbjct: 97  LPIP--CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED 154

Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG- 646
            +G  P+  A        + LLL  GAY +  D  G + L  AA  G+   +  L+D G 
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214

Query: 647 -MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705
            ++  C                  G+TPLH A I  H      LL   A ++  D DG  
Sbjct: 215 HIMNKC----------------KNGFTPLHNAII--HNRSAIELLINNASINDQDIDGST 256

Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLS 752
           PL  A        +   L  ++A+++ K + G   +    K + K  
Sbjct: 257 PLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDP 303

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.5 bits (164), Expect = 2e-12
 Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 21/183 (11%)

Query: 338 MFDSKNQSVLHKLCAENNINLLKTF----LKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
           +  S        L  E  +    +     LK      L   D  G+  L+ AA +G    
Sbjct: 29  LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKI 88

Query: 394 VQILLEAGANINHTDCEGWTPLRSAS-----WGGHSAVVKLLLQSGA---DVNCSDMGGR 445
           V++LL +GA++N  D +G TPL  A+       G+  V KLLL++GA     N  D  G 
Sbjct: 89  VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN 148

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
           T L  AA  G  +         +V+LLL AGA  N+ +S G TAL  +A  G  ++V  +
Sbjct: 149 TPLHWAALNGDAD---------IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Query: 506 LEY 508
           L+ 
Sbjct: 200 LDK 202

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.4 bits (172), Expect = 2e-12
 Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 25/247 (10%)

Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA 402
           + S+L   C E +  ++KT L     +D+ + D   +T L+ A  +G ++++++L E GA
Sbjct: 93  DTSILPIPCIEKD--MIKTILDC--GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA 148

Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
           ++N  D  G  P+  A       ++KLLL+ GA  N  D  G + L  AA          
Sbjct: 149 DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA---------E 199

Query: 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTA 522
            G    +KLL+  G H+      G T L  +    H      +L  +A IN QD DG T 
Sbjct: 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HNRSAIELLINNASINDQDIDGSTP 257

Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD------VCEIL 576
           L   A+  P       ++ ILL   A +  +D +G  P+  A    ++D      +   +
Sbjct: 258 LH-HAINPPCD---IDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAV 313

Query: 577 LENEADQ 583
           L  EAD+
Sbjct: 314 LIKEADK 320

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 21/241 (8%)

Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546
           + AL  +   G  DI   +L+   + N +  DG + +    L +   D  ++ + +L++ 
Sbjct: 3   QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIK---LAMKFRD--SEAIKLLMKH 57

Query: 547 GAKVDHEDREGMTPLLVAAFEGH-RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
           GA  D +  +  + L  A  EG  + V E+L   +   D   K G TPL  A  +     
Sbjct: 58  GAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDI 117

Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
           + LL+  GA  D  + +  + L +A   G+I  +  L+D           +    ++   
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH----------KACLDIE--- 164

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR-APLILAAQDGHYHLVEMFLE 724
            D CG TPL  A  +G   +C+ LL++GA +D    +G  A L  A ++    +V +F++
Sbjct: 165 -DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223

Query: 725 Q 725
           +
Sbjct: 224 R 224

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 69.1 bits (169), Expect = 7e-12
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 19/193 (9%)

Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
            D   + +D   A ++  +   +S G A ++  LL+     D  D +G TPL +AA +G+
Sbjct: 514 GDNGGEHDDPNMASNLLTV---ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGY 570

Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSV 629
            D   +LL++  +    D +G T LW A S  H     +L  + +  D        +L  
Sbjct: 571 EDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCT 628

Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
           AA + ++  + +LL +G              L+    D+ G T L  A  E H ++ R L
Sbjct: 629 AAKRNDLTAMKELLKQG--------------LNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Query: 690 LEAGAKVDQVDND 702
           +  GA VD+ + D
Sbjct: 675 IMNGADVDKANTD 687

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 60.3 bits (147), Expect = 9e-12
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFL 723
           G T LH AAI G  E+ + LLE G  +++ D DG   L +AA++G+  ++++ L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 68.4 bits (167), Expect = 1e-11
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 31/214 (14%)

Query: 315 KQFLK-TKEVSDTPCSDTPVSRITMFDSKNQ-SVLHKLCAENNINLLKTFLKSCEALDLE 372
           K FL+  KE+ D    D         D  N  S L  + +  N  LL+  LK+   LD +
Sbjct: 495 KNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKA--KLDPD 552

Query: 373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432
           + D  G+T L++AA +G+ D V +LL+   N++  D  G T L +A    H  + ++L  
Sbjct: 553 IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYH 612

Query: 433 --------SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS 484
                   +  D+ C      TA +                L  +K LL  G +V++ D 
Sbjct: 613 FASISDPHAAGDLLC------TAAKR-------------NDLTAMKELLKQGLNVDSEDH 653

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDND 518
           +G TAL  +    H D+V  ++   AD+++ + D
Sbjct: 654 QGATALQVAMAEDHVDMVRLLIMNGADVDKANTD 687

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 64/218 (29%), Positives = 95/218 (43%), Gaps = 18/218 (8%)

Query: 370 DLELVDKH-GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
           D+ + D+H G TAL+ A         ++LL  GAN+N  D    +PL  A    +  +V 
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVH 218

Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS-EGR 487
           +LL++GA  +  D  G T L       H+ V        ++KLLL  G  VNA     G 
Sbjct: 219 ILLENGASTDARDKCGNTPL-------HISVGYCKD-YDILKLLLEHGVDVNAKSYILGL 270

Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS-ILLEK 546
           TAL +S  +     +  +LEY ADIN  ++   T LS +       +    ++S I L K
Sbjct: 271 TALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLK 328

Query: 547 GAKVDHEDREGMTPLLVAAFEGH-----RDVCEILLEN 579
             K D ++ EG    +            +D CE  L  
Sbjct: 329 RIKPDIKNSEGFIDNMDCITSNKRLNQIKDKCEDELNR 366

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.8 bits (161), Expect = 5e-11
 Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 31/197 (15%)

Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPL---LVAAFEGHRDVCEILLENEADQDHIDK 588
           +S+   + V  LL  GA V+     G TPL   L  + E  +D+  +LLE  AD +  ++
Sbjct: 22  ASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER 81

Query: 589 SGRTPLWAAASMGH-ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID--VVNQLLDR 645
            G TPL            + LL+  GA V+  D  GRT L V  +  NI+  V+  LL +
Sbjct: 82  CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK 141

Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE---EVCRALLEAGAKVDQVDND 702
           G               D    D  G TPL    ++      E+ R L++AGA V  VD+ 
Sbjct: 142 G--------------ADVNALDLYGMTPLA-VLLKSRNANVELLRLLIDAGADVYAVDDR 186

Query: 703 GRAPLILAAQDGHYHLV 719
            R+ L       H+HL 
Sbjct: 187 FRSLL-------HHHLQ 196

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 66.2 bits (161), Expect = 6e-11
 Identities = 86/324 (26%), Positives = 129/324 (39%), Gaps = 49/324 (15%)

Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
           L + ++LL  GA VNA D    T +  +A  G+A +V+ +L Y AD+N    D  + L  
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE- 216

Query: 526 SALCVPSSDGYAKVVSIL----------LEKGAKVDHEDREGMTPLLVAAFEGHR-DVCE 574
              C   S     + +I+          L     + +ED E    L  A F  +  D C+
Sbjct: 217 ---CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273

Query: 575 ------------------ILLENEADQDHIDKSGRTPLWAAASMGH-ASCVALLLFWGAY 615
                              LLE  AD +  +  G TPL+  A  G+    +  L+  GA 
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333

Query: 616 VDTIDAEGRTVLSVAAA-QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
           V+  D    T L  A+    N D+V  LL+ G               +   RD C  TP+
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGA--------------NVNARDYCDKTPI 379

Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
           HYAA+  +  +   LL+ GA ++ +       L  A    + ++    L    ANVN K+
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN 439

Query: 735 HDGRTALRVNMKNVTKLSFWYLLI 758
            D  T L    K   KL    +L+
Sbjct: 440 KDLSTPLHYACKKNCKLDVIEMLL 463

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.8 bits (155), Expect = 2e-10
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 39/237 (16%)

Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
           +C+ S D    +  I+  KG  ++    E  TPL+ A   G   + E+ +++ AD +HI+
Sbjct: 7   MCIYSGD-IEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHIN 65

Query: 588 KSGRTPLWAAASMGHASCVALLLF-----------------------WGAYVDTIDAEGR 624
                PL  A  +G    + LL+                         G  V+  DAE +
Sbjct: 66  TKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELK 125

Query: 625 TVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEE 684
           T L  A  +G+++ +  L + G               D    D+ G  P+H A      +
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGA--------------DVNIEDDNGCYPIHIAIKHNFFD 171

Query: 685 VCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           + + LLE GA  +  DN+G +PL  AA+ G Y  +++ ++ +  ++  K  +G T L
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPL 227

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 62.2 bits (151), Expect = 6e-10
 Identities = 74/321 (23%), Positives = 121/321 (37%), Gaps = 64/321 (19%)

Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450
           +D V+ LL  G N+N  D    TPL       +   +K +++S     CS      A++ 
Sbjct: 50  LDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS--INKCSVFYTLVAIKD 107

Query: 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA 510
           A    ++E+          K++L                  +   +  A+I   +L Y A
Sbjct: 108 AFNNRNVEI---------FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA 158

Query: 511 DINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
           DIN +D + G TAL  +     + +   ++  +LL  GA V+  D+   +PL  A    +
Sbjct: 159 DINMKDRHKGNTALHYA-----TENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYN 213

Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSV 629
           + +  ILLEN A  D  DK G TPL       H S                         
Sbjct: 214 KPIVHILLENGASTDARDKCGNTPL-------HISVGYCK-------------------- 246

Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
                + D++  LL+ G+ +   +                G T LH +     E   + L
Sbjct: 247 -----DYDILKLLLEHGVDVNAKSYIL-------------GLTALHSSIKS--ERKLKLL 286

Query: 690 LEAGAKVDQVDNDGRAPLILA 710
           LE GA ++ +++    PL  A
Sbjct: 287 LEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
           +AA  GH + V+LLL  GAD    D+ GR    +AAK+GH  +++LL +   D       
Sbjct: 13  LAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD 72

Query: 949 YYY--YNSAKSGHETVLRLLKQYADDI 973
                + +A++G+  V++LL ++  D+
Sbjct: 73  GNTPLHLAARNGNLDVVKLLLKHGADV 99

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
           +AA+ GH + V+LLL  GAD    D  G     +AA++G+  V++LL ++  D       
Sbjct: 46  LAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

Query: 949 YYY--YNSAKSGHETVLRLL 966
                + +AK+GH  V++LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
              + LH      N+ ++K  L+     D+   DK G TAL++AA  G ++ V++LLE G
Sbjct: 27  DTDTALHLAARNGNLEIVKLLLEHGA--DVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Query: 402 ANINHTD 408
           A+IN  D
Sbjct: 85  ADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           + +AA+ G+ + V+LLL +GAD    D  G  A  +AA++G+ E V  LL+  AD
Sbjct: 32  LHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.2 bits (126), Expect = 8e-09
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
           G T L  AA  G  ++ + LLE   D +  D+ G T L  AA  G+   + LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 25/52 (48%), Positives = 34/52 (65%)

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
           TAL+ AA  G ++ V+ LLE G +IN TD +G T L  A+  G+  V+KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDN 701
           G TPLH AA  GH EV + LLEAGA V+  D 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 58.2 bits (141), Expect = 1e-08
 Identities = 64/282 (22%), Positives = 123/282 (43%), Gaps = 47/282 (16%)

Query: 391 VDAVQILLEAGANINHTDCEGW--TPL------RSASWGGHSAVVKLLLQSGADVNCSDM 442
           +  V++L++ GA++N+   +G+  TPL      R  +      +VKLLL+ GAD+N    
Sbjct: 50  IKIVKLLIDNGADVNY---KGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF 106

Query: 443 GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA-DSEGRTAL--IASAYMGHA 499
            G + +    +  ++    +L      + LL+ G +VN   +S G   L     ++    
Sbjct: 107 NGVSPIVCFIYNSNINNCDML------RFLLSKGINVNDVKNSRGYNLLHMYLESFSVKK 160

Query: 500 DIVSSILEYDADINQQDN-DGRTALSVSALCVPSSDGYAKVVSI-----LLEKGAKVDHE 553
           D++  +L +  ++ ++ +  G T +++             V+SI     L++KG  ++  
Sbjct: 161 DVIKILLSFGVNLFEKTSLYGLTPMNIYL------RNDIDVISIKVIKYLIKKGVNIETN 214

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENE----------ADQDHIDKSGRTPLWAAASMGHA 603
           +         +  E   D  +IL + E             +  DK G  PL  +A + + 
Sbjct: 215 NN-----GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNY 269

Query: 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
                LL  G  +  +  +G TVL+ A   GNID++N++L  
Sbjct: 270 EAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL 311

Length = 494

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 363 LKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPL 415
           L     +DL   D +G T L++AA  G ++ VQ LL+ G ++N  D +G T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 57.2 bits (138), Expect = 3e-08
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 19/177 (10%)

Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
           +V ++L +N    +H D +  + L   AS G+A+ +  LL      D  D++GRT L +A
Sbjct: 508 NVGDLLGDN--GGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIA 565

Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
           A++G  D V  LL       C          +   RD  G T L  A    H ++ R L 
Sbjct: 566 ASKGYEDCVLVLLKH----AC----------NVHIRDANGNTALWNAISAKHHKIFRILY 611

Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
              +  D   +     L  AA+      ++  L+Q   NV+ + H G TAL+V M  
Sbjct: 612 HFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAE 665

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 56.2 bits (136), Expect = 4e-08
 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 20/139 (14%)

Query: 349 KLCAENNINLLKTFLKSCEALDLELVD---KHGQTALNVAAHQGFVDAVQILLEAGANIN 405
            +   +  NLL  +L+S + +DL+++      G   +N        + V  LL  G  IN
Sbjct: 135 NIKNSDGENLLHLYLESNK-IDLKILKLLIDKG-VDINAK------NRVNYLLSYGVPIN 186

Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
             D  G+TPL  A +  +   VK LL  GA+ N  +  G T L  A    + E       
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE------- 239

Query: 466 LCVVKLLLAAGAHVNAADS 484
             + KLLL  G  +     
Sbjct: 240 --IFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 17/122 (13%)

Query: 369 LDLELVDKHGQTALNVAAHQG-----FVDAVQILLEAGA---NINHTDCEGWTPLRSASW 420
            D+   D  G T L++AA  G      ++  ++LLEAGA     N  D +G TPL  A+ 
Sbjct: 97  ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL 156

Query: 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
            G + +V+LLL++GAD N  +  G TAL  AA  G +E         +VKLLL  G H++
Sbjct: 157 NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE---------LVKLLLDKGLHLS 207

Query: 481 AA 482
             
Sbjct: 208 LL 209

Length = 235

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 56.8 bits (137), Expect = 5e-08
 Identities = 35/107 (32%), Positives = 48/107 (44%)

Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
            +ILL  GA+ N  D +G TPL  A   GH  VV++LL+ GAD    D  G+T L  A  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
            G  EV  +L         L A A  ++   +  +   +     H D
Sbjct: 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSHHPD 204

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 56.0 bits (135), Expect = 7e-08
 Identities = 64/292 (21%), Positives = 109/292 (37%), Gaps = 54/292 (18%)

Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCV-PSSDGYAKVVSILLEKGAKVDHEDR--- 555
           D+V S+L    ++NQ D+   T L +  +C  P+  G  +++  + +    V +      
Sbjct: 51  DVVKSLLTRGHNVNQPDHRDLTPLHI--ICKEPNKLGMKEMIRSINKC--SVFYTLVAIK 106

Query: 556 --------EGMTPLLVAAFEGHRD-----VCEI-------------LLENEADQDHIDK- 588
                   E    +L   ++  +      + +              LL   AD +  D+ 
Sbjct: 107 DAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRH 166

Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
            G T L  A          LLL +GA V+  D    + L  A    N  +V+ LL+ G  
Sbjct: 167 KGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG-- 224

Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE-EVCRALLEAGAKVD-QVDNDGRAP 706
                      S D   RD CG TPLH +     + ++ + LLE G  V+ +    G   
Sbjct: 225 ----------ASTD--ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA 272

Query: 707 LILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLI 758
           L  + +          L +Y A++N  +    T L   +K    ++   +LI
Sbjct: 273 LHSSIKSER---KLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI 321

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 56.1 bits (135), Expect = 7e-08
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG 634
           ILL   AD +  D  GRTPL  A + GH   V +LL +GA    +D +G+T L +A   G
Sbjct: 100 ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG 159

Query: 635 NIDVVNQLLDR 645
             +VV QLL R
Sbjct: 160 FREVV-QLLSR 169

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 56.1 bits (135), Expect = 7e-08
 Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
           L+V  LC  ++ G A    ILL  GA  +  D +G TPL +A   GH  V  +LLE  AD
Sbjct: 82  LTVE-LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD 140

Query: 583 QDHIDKSGRTPLWAAASMGHASCVALLL 610
              +DK G+TPL  A   G    V LL 
Sbjct: 141 PTLLDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           G T L  A+  G   +VK LL+ G D+N +D  G TAL  AA  G+LEV  +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 397 LLEAG-ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451
           LLE G  ++N TD  G TPL  A+  G   +V+ LL+ G D+N  D  G TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           GRT L  AA  G +++V  LL++G              +D    D  G T LH AA  G+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKG--------------VDINRTDEDGNTALHIAAENGN 46

Query: 683 EEVCRALL 690
            EV + LL
Sbjct: 47  LEVLKLLL 54

Length = 54

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 70/301 (23%), Positives = 117/301 (38%), Gaps = 72/301 (23%)

Query: 468 VVKLLLAAGAHVNAADSEGRTAL--IAS---AYMGHADIVSSILEYDADINQQDNDGRTA 522
           +VKL +  GA+VN  D+E  T L  I S    Y    DIV  ++E  ADIN++++DG T 
Sbjct: 53  IVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET- 111

Query: 523 LSVSALCVPSSDGY---AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR---DVCEIL 576
                L    S+GY    +++  ++E GA     D++G T L V     H    ++ ++L
Sbjct: 112 ----PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL 167

Query: 577 LENEAD-QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
           LE   D   H +K     L          C     ++   +D IDA              
Sbjct: 168 LEKGVDINTHNNKEKYDTL---------HC-----YFKYNIDRIDA-------------- 199

Query: 636 IDVVNQLLDRGMIL----------------GCLAGGRQTGS---------LDEQHRDNCG 670
            D++   +D G I+                  L   ++            +D    D  G
Sbjct: 200 -DILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELG 258

Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
           + PL+Y+    + ++   LL+ G  ++ +   G   L  A ++    +    L   + N 
Sbjct: 259 FNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILN-KKPNK 317

Query: 731 N 731
           N
Sbjct: 318 N 318

Length = 489

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 11/121 (9%)

Query: 538 KVVSILLEKGAKVDHEDREGMTPL--LVAAFEGHR---DVCEILLENEADQDHIDKSGRT 592
            +V + +  GA V+  D E  TPL  +++  + ++   D+ +IL+EN AD +  +  G T
Sbjct: 52  DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET 111

Query: 593 PLWAAASMGHASCVALLLFW---GAYVDTIDAEGRTVLSVAAAQGN---IDVVNQLLDRG 646
           PL+   S G+ + + +LLF    GA    +D +G T+L V     +   I+++  LL++G
Sbjct: 112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG 171

Query: 647 M 647
           +
Sbjct: 172 V 172

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.7 bits (129), Expect = 4e-07
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
           +AS  G +   ++LL  GAD NC D  GRT L  A   GH++         VV++LL  G
Sbjct: 90  AAS--GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQ---------VVRVLLEFG 138

Query: 477 AHVNAADSEGRTALIASAYMGHADIVSSILEY 508
           A     D +G+T L  +   G  ++V  +  +
Sbjct: 139 ADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.7 bits (129), Expect = 4e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)

Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
           TG  D   RD  G TPLH A   GH +V R LLE GA    +D DG+ PL LA ++G   
Sbjct: 103 TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162

Query: 718 LVEMFL 723
           +V++  
Sbjct: 163 VVQLLS 168

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 543 LLEKG-AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
           LLE G   ++  D  G TPL +AA  G  ++ + LL+   D +  D  G T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.0 bits (124), Expect = 1e-06
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 16/160 (10%)

Query: 392 DAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451
           D V  LLE GAN+N  D    TP+  A+   +  ++  LL  GAD+        TAL  A
Sbjct: 356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415

Query: 452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-IASAYMGHADIVSSILEYDA 510
             G +        P   VK L+  GA+VN+ + +  T L  A       D++  +L+  A
Sbjct: 416 LCGTN--------PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA 467

Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
           D+N  +   +  L ++         Y  +V+ILL  GA++
Sbjct: 468 DVNAINIQNQYPLLIAL-------EYHGIVNILLHYGAEL 500

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +  AA  G  + V+ LL  G D   +D  G  A  +AA++G+  VL+LL
Sbjct: 5   LHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
           + G +D    D  G TPLH AA  G  E+ + LL+ G  ++  D+DG   L LA
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 14/94 (14%)

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-------A 939
           + +AA+ G+ + V+LLL  GAD    D     A  +AA++G+  +++LL ++        
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 940 DDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
            D    +H      +A++G+  +++LL ++  DI
Sbjct: 59  KDGNTALHL-----AARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFL------KSCEALDLELVDKHGQTALNVAAHQG 389
           +   D+   + LH      N       +         +     L D+ G T L+ AA  G
Sbjct: 99  VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG 158

Query: 390 FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
             D V++LLEAGA+ N  +  G T L  A+  G   +VKLLL  G
Sbjct: 159 DADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
           +F     + LH       ++++K  +      D+   DK   + L++A   G +  +++L
Sbjct: 97  VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF--SPLHLAVMMGDIKGIELL 154

Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN-CSDMGGRTALRAAAWGGH 456
           ++  A ++  DC G TPL  A   G  A+ K+LL SGA+++     G   AL  A     
Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK 214

Query: 457 LEVTIVLGPLCVVKLLLAAGAHVN 480
           ++         +V+L +  GA  N
Sbjct: 215 ID---------IVRLFIKRGADCN 229

Length = 413

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 64/296 (21%), Positives = 119/296 (40%), Gaps = 30/296 (10%)

Query: 323 VSDTPCSDTPVSRITMFD----SKNQSVLHKLCAENNINL--LKTFLKSCEALDLELVDK 376
            SD     T    I   +        S+  K    ++ +   +K F+      ++  +D 
Sbjct: 12  FSDNVKLSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSPSTDIVKLFINL--GANVNGLDN 69

Query: 377 HGQTAL-----NVAAHQGFVDAVQILLEAGANINHTDCEGWTP---LRSASWGGHSAVVK 428
              T L     N+  ++  +D V+IL+E GA+IN  + +G TP   L S  +  +  ++ 
Sbjct: 70  EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILL 129

Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA-ADSEGR 487
            ++++GAD    D  G T L+      H  + I      ++KLLL  G  +N   + E  
Sbjct: 130 FMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIE-----IIKLLLEKGVDINTHNNKEKY 183

Query: 488 TALIASAYMGHADIVSSILEYDAD----INQQDNDGRTAL--SVSALCVPSSDGYAKVVS 541
             L          I + IL+   D    IN+++   +      +++L   +      ++ 
Sbjct: 184 DTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILD 243

Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
            +      ++  D  G  PL  +    +R + E LL+   D + I + G T L+ A
Sbjct: 244 FIF-SYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.7 bits (121), Expect = 4e-06
 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 330 DTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEAL----------DLELVDKHGQ 379
            TP   +T  +  +  V H L  E     L     S +A+          D    D  G+
Sbjct: 62  ATPDHNLTTEEVIDPVVAHMLTVE-----LCQLAASGDAVGARILLTGGADPNCRDYDGR 116

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
           T L++A   G V  V++LLE GA+    D +G TPL  A   G   VV+LL 
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
           GRTAL  AA  G LE+         VK LL  G  +N  D +G TAL  +A  G+ +++
Sbjct: 1   GRTALHKAAISGRLEL---------VKYLLEKGVDINRTDEDGNTALHIAAENGNLEVL 50

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
           LL      +NA D  G T L  +A  G  ++V  +L+   D+N +D+DG TAL
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
            ++LL  GA  N  D +GRT L  +   GH  +V  +LE+ AD    D DG+T L ++  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE- 156

Query: 529 CVPSSDGYAKVVSILL 544
                +G+ +VV +L 
Sbjct: 157 ----ENGFREVVQLLS 168

Length = 664

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 878 LGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
           +G SK    + IAA +G+EDCV +LL +  +    D  G  A   A  + H  + R+L  
Sbjct: 553 IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYH 612

Query: 938 YADDSEYFVHYYYYYNSAKSGHETVLR-LLKQ 968
           +A  S+          +AK    T ++ LLKQ
Sbjct: 613 FASISDPHAAGDLLCTAAKRNDLTAMKELLKQ 644

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
           GRT L  AA  G    V  LL  G  ++  D +G T L +AA  GN++V+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTD 408
            G T L++AA  G ++ V++LLEAGA++N  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.7 bits (114), Expect = 3e-05
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 662 DEQHRDNCGWTPLHY---AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHL 718
           D   R   G TPLH     + E  +++ R LLEAGA V+  +  G  PL L   +     
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98

Query: 719 VEMFLEQYEANVNQKSHDGRTALRVNMKN 747
           V   L +  A+VN K   GRT L V +  
Sbjct: 99  VIKLLIKAGADVNAKDKVGRTPLHVYLSG 127

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
           LL     D+N +D  G T L  AA  G LE         +V+ LL  G  +N  DS+G T
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALE---------LVQWLLKPGVDLNLRDSDGLT 51

Query: 489 AL 490
           AL
Sbjct: 52  AL 53

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVD 697
           G TPLH AA  G+ EV + LL+ GA ++
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVD 697
            G TPLH AA  G+ E+ + LLE GA ++
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
           +G TPL  A+  GH  VVKLLL++GADVN  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 45.8 bits (108), Expect = 8e-05
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
           V+ LL  G + N TD +G  PL  AS   ++ +V +LL  GAD N  D   +T L   + 
Sbjct: 55  VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLS- 113

Query: 454 GGHLEVTIVLGPLCVVKLLLAAGAHV-NAADSEGRTALIASAYMGHADIVSSILEYDADI 512
           G   EV      +  + LL+  GA + N+ D EG   L+A        +   I+    + 
Sbjct: 114 GTDDEV------IERINLLVQYGAKINNSVDEEGCGPLLACTDPSER-VFKKIMSIGFEA 166

Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR-- 570
              D  G+  +    +   S +  A  +S +++ G      D +G TPL +   +  +  
Sbjct: 167 RIVDKFGKNHIHRHLM---SDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNV 223

Query: 571 DVCEILLENEADQDHIDKSGRTPL 594
           D+  +LL +  D +  +K G +PL
Sbjct: 224 DIINLLLPS-TDVNKQNKFGDSPL 246

Length = 446

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
           GRTAL  +A       G  ++V  LLEKG  ++  D +G T L +AA  G+ +V ++LL
Sbjct: 1   GRTALHKAA-----ISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
           +G TPL +AA  GH +V ++LLE  AD +  DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINH 406
            G T L++AA  G ++ V++LLE GA+IN 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
           GRTAL  +A  G  ++V  +LE   DIN+ D DG TAL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.3 bits (107), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 687 RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK 746
           R LL  GA  +  D DGR PL +A  +GH  +V + LE + A+      DG+T L +  +
Sbjct: 99  RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEE 157

Query: 747 N 747
           N
Sbjct: 158 N 158

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDN 517
           +G T L  +A  GH ++V  +LE  AD+N +D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 68/271 (25%), Positives = 105/271 (38%), Gaps = 50/271 (18%)

Query: 351 CAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE 410
               ++  +   L+  + L++   D+ G++AL VAA +     +  LL    N++     
Sbjct: 25  AERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLL---NLSCRGAV 81

Query: 411 GWTPLRSASWGGHSAV---VKLLLQSGAD------VNCSDMG----GRTALRAAAWGGHL 457
           G T L + S     AV   +  LL +          N         G TAL  AA   + 
Sbjct: 82  GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNY 141

Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAA------------DS--EGRTALIASAYMGHADIVS 503
           E         +VKLLL  GA V A             DS   G + L A+A +G   IV+
Sbjct: 142 E---------IVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVA 192

Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV----SILLEKGAKVDH----ED- 554
            + E  ADI   D+ G T L +  +       Y ++     +  L    K+      E  
Sbjct: 193 LLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI 252

Query: 555 --REGMTPLLVAAFEGHRDVCEILLENEADQ 583
              +G+TPL +AA EG   +  + L  +  Q
Sbjct: 253 LNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQ 283

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 468 VVKLLLAAGAHVNAADSEGRTAL---IASAYMGHADIVSSILEYDADINQQDNDGRTALS 524
           VV   L  G  ++  DS GRT L   I    +   DI+  + EY  D+N+ DN G T L 
Sbjct: 299 VVYSFLQPGVKLHYKDSAGRTCLHQYILRHNI-STDIIKLLHEYGNDLNEPDNIGNTVLH 357

Query: 525 --VSALCV-----PSSDGYAK--VVSILLEKGAKVDHEDREGMTPL 561
             +S L V     P +D   +  V+  L+  GA +   +  G TPL
Sbjct: 358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPL 403

Length = 764

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 689 LLEAG-AKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           LLE G   ++  D +G  PL LAA+ G   LV+  L+    ++N +  DG TAL
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE 485
           ++K L+++GADVN        +        +  V        ++K+L+ +G+ +   D +
Sbjct: 68  ILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPE-----ILKILIDSGSSITEEDED 122

Query: 486 GRTALIASAYMGH----ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
           G+  L    YM +     +++  +++       +D D    L  S +   S     K+  
Sbjct: 123 GKNLL--HMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY-SYILFHSDK---KIFD 176

Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEG 568
            L   G  ++  ++ G     +  F  
Sbjct: 177 FLTSLGIDINETNKSGYNCYDLIKFRN 203

Length = 209

>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional

 Score = 43.1 bits (101), Expect = 6e-04
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
           L + KL +     +N  D+ GRT L  + Y G+ D+VS +LE  A++N   ++G T L V
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260

Query: 526 S---ALCVPSSDGYAKVVSILLEKGAKVD 551
           +      +   + + K++ ILL +   +D
Sbjct: 261 AVDRGSVIARRETHLKILEILLREPLSID 289

Length = 437

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.1 bits (102), Expect = 7e-04
 Identities = 45/133 (33%), Positives = 58/133 (43%), Gaps = 23/133 (17%)

Query: 635 NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE-----EVCRAL 689
           NIDVV  LLD G               D         TPLHY +   +      E+ + L
Sbjct: 47  NIDVVKILLDNGA--------------DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92

Query: 690 LEAGAKVDQVDNDGRAPLILAAQD--GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK- 746
           LE GA V+  DN+G  PL+ A       Y +VE +L    ANVN K+ DG   L + ++ 
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVE-YLLDNGANVNIKNSDGENLLHLYLES 151

Query: 747 NVTKLSFWYLLIQ 759
           N   L    LLI 
Sbjct: 152 NKIDLKILKLLID 164

Length = 422

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 359 LKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSA 418
           LK+FL S +A      D HG +AL  A     V  V  LL AGA  N  + E   PL  A
Sbjct: 14  LKSFLSSKDAFK---ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQA 68

Query: 419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
           +    + +VK+LL SG D +  D  G TAL  A   G+++
Sbjct: 69  ATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQ 108

Length = 284

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
           + LHK      + L+K  L+    +D+   D+ G TAL++AA  G ++ +++LL
Sbjct: 3   TALHKAAISGRLELVKYLLEK--GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 25/151 (16%)

Query: 606 VALLLFWGAYVDTIDAEGRTVLSV---AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
           V  LL  GA V+     G+T L +    +++   D+V  LL+ G               D
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA--------------D 75

Query: 663 EQHRDNCGWTPLHY---AAIEGHEEVCRALLEAGAKVDQVDNDGRAPL--ILAAQDGHYH 717
               + CG+TPLH     A     +V + L++AGA V+  D  GR PL   L+  + +  
Sbjct: 76  VNAPERCGFTPLHLYLYNATT--LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK 133

Query: 718 LVEMFLEQYEANVNQKSHDGRTALRVNMKNV 748
           ++ + L +  A+VN     G T L V +K+ 
Sbjct: 134 VIRLLLRK-GADVNALDLYGMTPLAVLLKSR 163

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           G TPL  AA  GH   V LLL  GA V+  D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 869 SRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH 928
            RD   R  L          IA   GH   VR+LL +GADP   D  G+    +A ++G 
Sbjct: 110 CRDYDGRTPL---------HIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160

Query: 929 ETVLRLLKQYA 939
             V++LL +++
Sbjct: 161 REVVQLLSRHS 171

Length = 664

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 79/295 (26%), Positives = 111/295 (37%), Gaps = 67/295 (22%)

Query: 421 GGHSAVVKLLLQSGA--DVNCSDMGGRTALRAAAWGG-HLEVTIVLGPLCVVKLLLAAGA 477
            G  A V   L+     ++NC D  GR+AL  AA    +LE+T          LLL    
Sbjct: 27  RGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTE---------LLLNLSC 77

Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD------ND--------GRTAL 523
                 + G T L A   + + D V +IL +     ++       ND        G TAL
Sbjct: 78  RG----AVGDTLLHA-ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITAL 132

Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
            ++A        Y ++V +LLE+GA V              A     D            
Sbjct: 133 HLAAHR----QNY-EIVKLLLERGASVP-----------ARA---CGDFFVK-------S 166

Query: 584 DHID--KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQ 641
             +D    G +PL AAA +G  S VALL    A + T D+ G T+L +   +       +
Sbjct: 167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYE 226

Query: 642 LLDRGM---ILGCLAGGRQTGSLDE--QHRDNCGWTPLHYAAIEGHEEVCRALLE 691
            L   M    L  L   R +  L+    H+     TPL  AA EG   + R  L 
Sbjct: 227 ELSCQMYNFALSLLDKLRDSKELEVILNHQGL---TPLKLAAKEGRIVLFRLKLA 278

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 391 VDAVQILLEAGANINH-TDCEGWTPLR---SASWGGHSAVVKLLLQSGADVNCSDMGGRT 446
           V+ ++ L+E GA++N  T     + L    S +      ++K+L+ SG+ +   D  G+ 
Sbjct: 66  VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN 125

Query: 447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD--IVSS 504
            L       H+ +      + V+KLL+ +G      D +    L  S  + H+D  I   
Sbjct: 126 LL-------HMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNIL-YSYILFHSDKKIFDF 177

Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +     DIN+ +  G     + 
Sbjct: 178 LTSLGIDINETNKSGYNCYDLI 199

Length = 209

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEI 57
          +   RE    +L+  L    +  P +    L+ G  G+GKT+L +E+
Sbjct: 1  RLVGREEELERLLDALRRARSGGPPS---VLLTGPSGTGKTSLLREL 44

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 22/40 (55%), Positives = 22/40 (55%), Gaps = 9/40 (22%)

Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
           G T L  AA  GHLEV         VKLLL AGA VNA D
Sbjct: 2   GNTPLHLAARNGHLEV---------VKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
           ++  D  G T L +AA  G +++V  LL  G              +D   RD+ G T L 
Sbjct: 9   LNATDGNGNTPLHLAAKYGALELVQWLLKPG--------------VDLNLRDSDGLTALD 54

Query: 676 YA 677
            A
Sbjct: 55  LA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDH 914
           +AA+ GH + V+LLL  GAD    D 
Sbjct: 8   LAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.8 bits (92), Expect = 0.004
 Identities = 20/55 (36%), Positives = 25/55 (45%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
            AA  G  D V LLL  GADP   +  G  A   AAK+G   +++LL        
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Length = 235

>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG------- 422
           D+  +D  G+T L  A + G++D V  LLE GAN+N     G+T L  A   G       
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRE 272

Query: 423 -HSAVVKLLLQSGADVNC 439
            H  ++++LL+    ++C
Sbjct: 273 THLKILEILLREPLSIDC 290

Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	978
KOG4177|consensus	1143		100.0
KOG4177|consensus	1143		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		99.98
KOG4369|consensus	2131		99.97
KOG0509|consensus	600		99.95
KOG0509|consensus	600		99.95
KOG4369|consensus	2131		99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
KOG0502|consensus	296		99.9
KOG0502|consensus	296		99.9
KOG0507|consensus	854		99.89
KOG0507|consensus	854		99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
KOG0514|consensus	452		99.83
KOG0514|consensus	452		99.83
KOG0505|consensus	527		99.83
KOG0505|consensus	527		99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.78
KOG0512|consensus	228		99.77
PHA02741	169	hypothetical protein; Provisional	99.76
PHA02741	169	hypothetical protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.74
PHA02884	300	ankyrin repeat protein; Provisional	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.71
PHA02736	154	Viral ankyrin protein; Provisional	99.7
KOG0512|consensus	228		99.7
KOG0195|consensus	448		99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
KOG3676|consensus	782		99.59
KOG0195|consensus	448		99.58
KOG3676|consensus	782		99.56
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.56
KOG4214|consensus	117		99.53
PF05729	166	NACHT: NACHT domain	99.52
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.5
KOG4214|consensus	117		99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.29
KOG1710|consensus	396		99.29
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.28
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.27
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.25
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.24
KOG0515|consensus	752		99.16
KOG0515|consensus	752		99.16
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.15
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.13
KOG1710|consensus	396		99.13
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.12
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.93
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.87
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.82
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.58
KOG0782|consensus	1004		98.55
PF13606	30	Ank_3: Ankyrin repeat	98.53
PF13606	30	Ank_3: Ankyrin repeat	98.53
KOG0783|consensus	1267		98.51
KOG0506|consensus	622		98.48
PRK04841	903	transcriptional regulator MalT; Provisional	98.48
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.45
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.4
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.39
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.38
KOG0783|consensus	1267		98.38
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.38
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.35
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.33
KOG0782|consensus	1004		98.32
PRK12402	337	replication factor C small subunit 2; Reviewed	98.3
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.27
PF14516	331	AAA_35: AAA-like domain	98.26
KOG0818|consensus	669		98.25
KOG0818|consensus	669		98.22
KOG0506|consensus	622		98.2
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.19
COG3899	849	Predicted ATPase [General function prediction only	98.17
KOG0705|consensus	749		98.15
PLN03025	319	replication factor C subunit; Provisional	98.14
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.11
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.09
KOG0522|consensus	560		98.08
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.02
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.01
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.97
PRK08084	235	DNA replication initiation factor; Provisional	97.96
KOG0511|consensus	516		97.96
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.93
KOG2384|consensus	223		97.92
KOG0511|consensus	516		97.91
PRK04195	482	replication factor C large subunit; Provisional	97.89
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.87
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.87
KOG0705|consensus	749		97.87
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.86
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.83
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.82
KOG2384|consensus	223		97.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.8
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.8
KOG0522|consensus	560		97.79
KOG3609|consensus	822		97.78
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.78
PTZ00202	550	tuzin; Provisional	97.77
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.77
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.77
PF00004	132	AAA: ATPase family associated with various cellula	97.77
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.76
KOG3609|consensus	822		97.74
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.74
PRK13342	413	recombination factor protein RarA; Reviewed	97.72
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.69
PHA02544	316	44 clamp loader, small subunit; Provisional	97.69
PRK09087	226	hypothetical protein; Validated	97.69
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.69
PRK06893	229	DNA replication initiation factor; Validated	97.68
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.67
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.67
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	97.66
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.65
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.63
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.63
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.62
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.61
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.6
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.58
KOG0521|consensus	785		97.57
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	97.57
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.57
PRK07471	365	DNA polymerase III subunit delta'; Validated	97.57
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	97.57
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.56
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	97.56
PRK08727	233	hypothetical protein; Validated	97.56
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.55
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.53
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.48
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.48
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.47
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.47
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.46
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.45
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.44
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.42
KOG0521|consensus	785		97.41
PRK13341	725	recombination factor protein RarA/unknown domain f	97.4
KOG0734|consensus	752		97.36
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.35
PRK06620	214	hypothetical protein; Validated	97.34
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.33
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.32
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.31
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.31
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.29
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.29
KOG0989|consensus	346		97.28
PRK05707	328	DNA polymerase III subunit delta'; Validated	97.28
KOG0744|consensus	423		97.27
KOG0727|consensus	408		97.24
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.23
KOG2227|consensus	529		97.17
KOG0739|consensus	439		97.14
KOG1514|consensus	767		97.13
KOG0520|consensus	975		97.12
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.12
PRK05642	234	DNA replication initiation factor; Validated	97.12
CHL00195	489	ycf46 Ycf46; Provisional	97.1
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.08
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.06
COG5635	824	Predicted NTPase (NACHT family) [Signal transducti	97.06
KOG0520|consensus	975		97.04
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.04
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.02
CHL00181	287	cbbX CbbX; Provisional	96.98
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.94
KOG2028|consensus	554		96.93
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.92
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.82
KOG4658|consensus	889		96.82
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.8
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.8
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.79
KOG2004|consensus	906		96.78
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.77
PF13173	128	AAA_14: AAA domain	96.77
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.75
PRK12422	445	chromosomal replication initiation protein; Provis	96.75
KOG2543|consensus	438		96.74
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.74
KOG0733|consensus	802		96.73
PRK07952	244	DNA replication protein DnaC; Validated	96.7
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.62
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	96.57
KOG1970|consensus	634		96.56
PF13245	76	AAA_19: Part of AAA domain	96.54
KOG2228|consensus	408		96.48
PRK06526	254	transposase; Provisional	96.46
PF07088	484	GvpD: GvpD gas vesicle protein; InterPro: IPR00978	96.44
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.43
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.42
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.41
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.37
PRK07399	314	DNA polymerase III subunit delta'; Validated	96.35
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.34
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.32
PRK08116	268	hypothetical protein; Validated	96.28
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	96.26
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.24
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.23
PRK12608	380	transcription termination factor Rho; Provisional	96.22
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.2
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.15
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.13
KOG0738|consensus	491		96.1
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	96.1
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.1
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.08
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.06
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.05
KOG1969|consensus	877		96.05
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.04
CHL00095	821	clpC Clp protease ATP binding subunit	96.01
CHL00176	638	ftsH cell division protein; Validated	96.0
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	95.98
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	95.97
KOG0743|consensus	457		95.94
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.94
PRK06762	166	hypothetical protein; Provisional	95.92
KOG2505|consensus	591		95.91
PF10923	416	DUF2791: P-loop Domain of unknown function (DUF279	95.9
PLN02674	244	adenylate kinase	95.89
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	95.89
KOG0652|consensus	424		95.87
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.85
KOG0731|consensus	774		95.81
PRK08769	319	DNA polymerase III subunit delta'; Validated	95.79
KOG3079|consensus	195		95.78
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	95.76
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	95.74
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.73
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	95.72
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	95.71
PRK13531	498	regulatory ATPase RavA; Provisional	95.7
PRK08233	182	hypothetical protein; Provisional	95.7
PRK06851	367	hypothetical protein; Provisional	95.66
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.64
KOG0726|consensus	440		95.59
KOG3347|consensus	176		95.58
KOG0730|consensus	693		95.53
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.53
TIGR00767	415	rho transcription termination factor Rho. Members	95.53
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.53
PLN03077	857	Protein ECB2; Provisional	95.49
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.49
PRK08058	329	DNA polymerase III subunit delta'; Validated	95.48
PRK07993	334	DNA polymerase III subunit delta'; Validated	95.47
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.45
PRK00279	215	adk adenylate kinase; Reviewed	95.42
PTZ00088	229	adenylate kinase 1; Provisional	95.41
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.41
KOG0736|consensus	953		95.37
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.36
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	95.36
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.34
PRK06871	325	DNA polymerase III subunit delta'; Validated	95.32
KOG2035|consensus	351		95.32
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.31
PRK06851	367	hypothetical protein; Provisional	95.29
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.28
smart00382	148	AAA ATPases associated with a variety of cellular	95.28
KOG0735|consensus	952		95.26
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	95.26
KOG0635|consensus	207		95.22
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	95.22
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.2
cd01128	249	rho_factor Transcription termination factor rho is	95.18
KOG0735|consensus	952		95.18
PRK06964	342	DNA polymerase III subunit delta'; Validated	95.17
KOG0651|consensus	388		95.17
PRK13808	333	adenylate kinase; Provisional	95.16
PRK06696	223	uridine kinase; Validated	95.14
PRK05541	176	adenylylsulfate kinase; Provisional	95.12
PLN02459	261	probable adenylate kinase	95.11
PRK14529	223	adenylate kinase; Provisional	95.09
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.09
PRK00131	175	aroK shikimate kinase; Reviewed	95.08
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.04
KOG2505|consensus	591		95.01
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.01
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	95.01
PRK10865	857	protein disaggregation chaperone; Provisional	94.97
PRK08118	167	topology modulation protein; Reviewed	94.95
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	94.95
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.94
PRK14527	191	adenylate kinase; Provisional	94.94
COG3911	183	Predicted ATPase [General function prediction only	94.93
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	94.93
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	94.91
PRK08939	306	primosomal protein DnaI; Reviewed	94.85
PRK10536	262	hypothetical protein; Provisional	94.84
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	94.84
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	94.82
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	94.8
PRK06761	282	hypothetical protein; Provisional	94.8
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	94.78
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	94.77
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	94.74
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	94.72
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.69
PHA00729	226	NTP-binding motif containing protein	94.68
PHA02244	383	ATPase-like protein	94.68
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	94.68
PRK14531	183	adenylate kinase; Provisional	94.68
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	94.67
PRK12377	248	putative replication protein; Provisional	94.64
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	94.62
KOG0733|consensus	802		94.62
PLN02200	234	adenylate kinase family protein	94.61
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	94.58
PHA02774	613	E1; Provisional	94.57
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	94.54
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	94.52
PRK12339	197	2-phosphoglycerate kinase; Provisional	94.47
PRK00889	175	adenylylsulfate kinase; Provisional	94.47
KOG0730|consensus	693		94.43
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.37
PRK07261	171	topology modulation protein; Provisional	94.31
PRK14737	186	gmk guanylate kinase; Provisional	94.31
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.3
PRK04040	188	adenylate kinase; Provisional	94.26
PRK14738	206	gmk guanylate kinase; Provisional	94.21
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.21
PRK15455	644	PrkA family serine protein kinase; Provisional	94.2
PRK08181	269	transposase; Validated	94.17
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	94.17
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	94.17
PRK08699	325	DNA polymerase III subunit delta'; Validated	94.15
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.13
PRK14532	188	adenylate kinase; Provisional	94.12
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.12
COG4240	300	Predicted kinase [General function prediction only	94.11
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	94.1
PRK03846	198	adenylylsulfate kinase; Provisional	94.09
PRK03839	180	putative kinase; Provisional	94.07
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	94.03
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	94.0
PRK14528	186	adenylate kinase; Provisional	94.0
PRK05480	209	uridine/cytidine kinase; Provisional	94.0
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	93.99
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	93.98
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	93.96
TIGR02237	209	recomb_radB DNA repair and recombination protein R	93.95
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	93.95
PRK10865	857	protein disaggregation chaperone; Provisional	93.95
PRK09825	176	idnK D-gluconate kinase; Provisional	93.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.93
PRK14530	215	adenylate kinase; Provisional	93.92
PRK01184	184	hypothetical protein; Provisional	93.92
PRK02496	184	adk adenylate kinase; Provisional	93.89
COG4136	213	ABC-type uncharacterized transport system, ATPase	93.88
PRK15453	290	phosphoribulokinase; Provisional	93.86
PRK05022	509	anaerobic nitric oxide reductase transcription reg	93.84
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	93.81
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.78
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	93.78
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	93.76
PHA02624	647	large T antigen; Provisional	93.76
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	93.74
PRK08356	195	hypothetical protein; Provisional	93.74
cd01394	218	radB RadB. The archaeal protein radB shares simila	93.73
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	93.72
PTZ00301	210	uridine kinase; Provisional	93.72
KOG3928|consensus	461		93.68
PRK06547	172	hypothetical protein; Provisional	93.65
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	93.62
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	93.6
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	93.58
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	93.57
PRK06835	329	DNA replication protein DnaC; Validated	93.56
KOG2170|consensus	344		93.56
PRK13765	637	ATP-dependent protease Lon; Provisional	93.55
PRK06921	266	hypothetical protein; Provisional	93.55
COG0593	408	DnaA ATPase involved in DNA replication initiation	93.55
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.54
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	93.5
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	93.49
PRK13975	196	thymidylate kinase; Provisional	93.48
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	93.48
PRK06090	319	DNA polymerase III subunit delta'; Validated	93.46
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.46
PHA02530	300	pseT polynucleotide kinase; Provisional	93.44
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	93.44
PRK14526	211	adenylate kinase; Provisional	93.44
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	93.43
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	93.43
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	93.43
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	93.43
PRK06217	183	hypothetical protein; Validated	93.43
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	93.42
PRK00625	173	shikimate kinase; Provisional	93.4
PRK13546	264	teichoic acids export protein ATP-binding subunit;	93.37
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	93.37
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	93.37
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	93.37
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.36
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	93.35
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	93.35
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	93.34
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	93.33
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	93.33
CHL00206	2281	ycf2 Ycf2; Provisional	93.31
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.31
PF07999	439	RHSP: Retrotransposon hot spot protein; InterPro:	93.31
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	93.29
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	93.25
COG1484	254	DnaC DNA replication protein [DNA replication, rec	93.24
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	93.22
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	93.21
PRK13536	340	nodulation factor exporter subunit NodI; Provision	93.16
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	93.13
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	93.13
TIGR00235	207	udk uridine kinase. Model contains a number of lon	93.11
PRK04182	180	cytidylate kinase; Provisional	93.08
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	93.06
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	93.05
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	93.02
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	93.01
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	93.0
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	92.99
PRK09376	416	rho transcription termination factor Rho; Provisio	92.99
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	92.98
PRK05439	311	pantothenate kinase; Provisional	92.97
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	92.96
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	92.96
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	92.95
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	92.95
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	92.9
KOG0729|consensus	435		92.9
PRK09435	332	membrane ATPase/protein kinase; Provisional	92.87
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	92.86
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	92.79
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	92.78
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	92.76
PRK07667	193	uridine kinase; Provisional	92.76
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	92.75
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	92.74
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	92.74
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	92.72
PRK09183	259	transposase/IS protein; Provisional	92.71
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	92.67
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	92.65
PRK04132	846	replication factor C small subunit; Provisional	92.65
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	92.63
PRK12338	319	hypothetical protein; Provisional	92.61
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	92.59
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	92.57
PLN02796	347	D-glycerate 3-kinase	92.55
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	92.5
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	92.47
PRK13537	306	nodulation ABC transporter NodI; Provisional	92.47
PRK00300	205	gmk guanylate kinase; Provisional	92.41

>KOG4177|consensus

Probab=100.00  E-value=2e-62  Score=558.17  Aligned_cols=566  Identities=30%  Similarity=0.361  Sum_probs=518.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384         341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW  420 (978)
Q Consensus       341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  420 (978)
                      ..+.||+|+|+-+|+.++.+.++.  .+..++..+.+|.||||.|++.|+.++++.|+..|+.++..+..+.||||.|+.
T Consensus        52 k~~~~pl~~aa~~~~~~v~~~ll~--~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~  129 (1143)
T KOG4177|consen   52 KSGFTPLHIAAHYGNENVAELLLN--RGAIVNATARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAAR  129 (1143)
T ss_pred             ccccCHHHHHhhhhhhhhhhhhhc--cccccCcccccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhcc
Confidence            367788888888888888888887  777778788888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384         421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD  500 (978)
Q Consensus       421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~  500 (978)
                      .|+.+++.+|+..+++++.+++.|.+|+++|+.   ...         +.++.++..      .+.. +++.|...++.+
T Consensus       130 ~g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~---~~~---------~~ll~~~~~------~d~l-~~~~~~~~~~~~  190 (1143)
T KOG4177|consen  130 KGHVQVIELLLQHGAPINIKTKNGLSPLHMAAQ---VAC---------ARLLLEYKA------PDYL-RLHVAAHCGHAR  190 (1143)
T ss_pred             cccHHHHHHHHHccCCCcccccCCCCchhhhcc---hhh---------hHHhhhccc------chhh-hhhHHhhcchHH
Confidence            888888888888888888888888888888876   333         666666544      1222 668888899999


Q ss_pred             HHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy9384         501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE  580 (978)
Q Consensus       501 ~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g  580 (978)
                      +++.++...++.+..+.++.||+|.++     ..+..+++++++.+|+++...+..|.+|+|.|+..|+.+++.+++.+|
T Consensus       191 ~~~ll~~~~~~~~a~~~~~~tpl~~a~-----~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~g  265 (1143)
T KOG4177|consen  191 VAKLLLDKKADPNASALNGFTPLHIAC-----KKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHG  265 (1143)
T ss_pred             HHhhhhcccCCccccccCCCCchhhhc-----cccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcc
Confidence            999999999999999999999999999     889999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCC
Q psy9384         581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGS  660 (978)
Q Consensus       581 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~  660 (978)
                      +.++..+..+.||+|.|+..+..++.++|+++|+++.......+|++|.|...|+.+++..+++.+              
T Consensus       266 a~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~--------------  331 (1143)
T KOG4177|consen  266 ASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAG--------------  331 (1143)
T ss_pred             cccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhcc--------------
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcH
Q psy9384         661 LDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA  740 (978)
Q Consensus       661 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~  740 (978)
                      ...+..+..|.+|+|+++..++.++..+|.+.+..-...+..+.||+|.|+.+|+.+++++++.+ |++++..+..|.||
T Consensus       332 ~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~gk~gvTp  410 (1143)
T KOG4177|consen  332 ATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSAGKNGVTP  410 (1143)
T ss_pred             CCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhc-cCCcccCCCCCcce
Confidence            78888999999999999999999999999999988888889999999999999999999999998 99999999999999


Q ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhc-hHHHHHHHHHhc------ccccch
Q psy9384         741 LRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKK-RLHILRKIISIA------NNEHII  813 (978)
Q Consensus       741 L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g-~~~i~~~l~~~~------~~~~~t  813 (978)
                      ||.|.     ..++..+++.++    ++|     ++.+..+..|.|++|.|+..| ..++...+...+      ...|.|
T Consensus       411 lh~aa-----~~~~~~~v~l~l----~~g-----A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T  476 (1143)
T KOG4177|consen  411 LHVAA-----HYGNPRVVKLLL----KRG-----ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFT  476 (1143)
T ss_pred             eeehh-----hccCcceEEEEe----ccC-----CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCc
Confidence            99999     899999999999    999     999999999999999999999 788888887776      678999


Q ss_pred             hhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc-----hhhhhhhccCCchhhhhhhCCCCCCchHH
Q psy9384         814 LFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEKIS  888 (978)
Q Consensus       814 ~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~L~  888 (978)
                      |||  .|+..|+.+   +++.|++. ++..+.....+.+++|.+..     +.+.++++|++++.++ ..|    .||||
T Consensus       477 ~Lh--laaq~Gh~~---~~~llle~-~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~-~r~----~TpLh  545 (1143)
T KOG4177|consen  477 PLH--LAAQEGHTE---VVQLLLEG-GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRT-GRG----YTPLH  545 (1143)
T ss_pred             chh--hhhccCCch---HHHHhhhc-CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhc-ccc----cchHH
Confidence            999  999999999   99999999 99999999999999999988     8999999999999999 888    99999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCCcccc--cchhhhhhhhcChhHHHHHH
Q psy9384         889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFV--HYYYYYNSAKSGHETVLRLL  966 (978)
Q Consensus       889 ~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~--~~~~l~~A~~~~~~~~~~~L  966 (978)
                      +||.+|+.++||+|+++|||++.+++.|+||||.|+..|+.+++.+|+++|+++|...  |.|||++|+..|+.+++++|
T Consensus       546 ~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l  625 (1143)
T KOG4177|consen  546 VAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLL  625 (1143)
T ss_pred             HHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHH
Confidence            9999999999999999999999999999999999999999999999999999999955  88999999999999999999


Q ss_pred             HhhcCC
Q psy9384         967 KQYADD  972 (978)
Q Consensus       967 ~~~~~~  972 (978)
                      +..+.+
T Consensus       626 ~~~~~~  631 (1143)
T KOG4177|consen  626 KVVTAT  631 (1143)
T ss_pred             HhccCc
Confidence            999876

>KOG4177|consensus

Probab=100.00  E-value=4.8e-60  Score=538.74  Aligned_cols=557  Identities=28%  Similarity=0.342  Sum_probs=524.4

Q ss_pred             cccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy9384         334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWT  413 (978)
Q Consensus       334 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t  413 (978)
                      ..++..+..|.+|||.|+..|+.++++.|+.  .++..+..+..+.||||.|+..|+.+.+.+|+..|++++.+|..|.|
T Consensus        78 a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~--~ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~~~k~~~g~t  155 (1143)
T KOG4177|consen   78 AIVNATARNGITPLHVASKRGDAEMVKLLLC--RGAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAPINIKTKNGLS  155 (1143)
T ss_pred             cccCcccccCccHHHHHHhhcchhHHHHHHh--ccCchhhcccCCCcchhhhcccccHHHHHHHHHccCCCcccccCCCC
Confidence            5667778899999999999999999999999  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384         414 PLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS  493 (978)
Q Consensus       414 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A  493 (978)
                      |+|+|+.   ...++++.++..      .+-. +++.|...++.++         +++++...++.+..+..+.||+|.|
T Consensus       156 ~l~~a~~---~~~~~ll~~~~~------~d~l-~~~~~~~~~~~~~---------~~ll~~~~~~~~a~~~~~~tpl~~a  216 (1143)
T KOG4177|consen  156 PLHMAAQ---VACARLLLEYKA------PDYL-RLHVAAHCGHARV---------AKLLLDKKADPNASALNGFTPLHIA  216 (1143)
T ss_pred             chhhhcc---hhhhHHhhhccc------chhh-hhhHHhhcchHHH---------HhhhhcccCCccccccCCCCchhhh
Confidence            9999998   778888888755      2223 7799999999999         9999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy9384         494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC  573 (978)
Q Consensus       494 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv  573 (978)
                      +..+..++++.++.+|+++...+..+-+|+|.|+     ..|+.+++.+|+.+|+.++..+..+.||+|.|+..+..++.
T Consensus       217 ~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~-----~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~  291 (1143)
T KOG4177|consen  217 CKKNRIKVVELLLKHGADVSAKDESGLTPLHVAA-----FMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVC  291 (1143)
T ss_pred             ccccccceeeeeeeccCcCCcccccCccHHHHHH-----hccchhHHHHHHhcccccCcccccccCcchhhhccchhhhH
Confidence            9999999999999999999999999999999999     78999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccc
Q psy9384         574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA  653 (978)
Q Consensus       574 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~  653 (978)
                      ++|+++|+++........||++.|...+..+++..+++.++.++..+..+.+|+|.++..++.++..++...+       
T Consensus       292 ~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~-------  364 (1143)
T KOG4177|consen  292 KLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHG-------  364 (1143)
T ss_pred             hhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccc-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998887       


Q ss_pred             CCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCC
Q psy9384         654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK  733 (978)
Q Consensus       654 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~  733 (978)
                             ......+..+.+|+|.|+..|..+++++++.+|++++.....|.||||.|+.+++..+++.++++ +++++..
T Consensus       365 -------~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~-gA~~~~~  436 (1143)
T KOG4177|consen  365 -------AQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKR-GASPNAK  436 (1143)
T ss_pred             -------cccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEecc-CCChhhH
Confidence                   45555678899999999999999999999999999999999999999999999999999999998 9999999


Q ss_pred             CCCCCcHHHHHHhcccchhH-HHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhc-----
Q psy9384         734 SHDGRTALRVNMKNVTKLSF-WYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIA-----  807 (978)
Q Consensus       734 ~~~g~t~L~~a~~~~~~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~-----  807 (978)
                      +..|+||+|+|+     ..+ ..++...++    ..|     .+++.....|.||||.|+..|+.++++.+++..     
T Consensus       437 ~~lG~T~lhvaa-----~~g~~~~~~~~l~----~~g-----~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~  502 (1143)
T KOG4177|consen  437 AKLGYTPLHVAA-----KKGRYLQIARLLL----QYG-----ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNL  502 (1143)
T ss_pred             hhcCCChhhhhh-----hcccHhhhhhhHh----hcC-----CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCc
Confidence            999999999999     777 888888888    999     999999999999999999999999999999976     


Q ss_pred             -ccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc-----hhhhhhhccCCchhhhhhhCCC
Q psy9384         808 -NNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-----VPSATDEHFSRDTHMRIILGSS  881 (978)
Q Consensus       808 -~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~  881 (978)
                       ...+.+++|  .+...+...   +++.++++ |++++.++..|.||||.|+.     +|++|+++|++++.++ +.|  
T Consensus       503 ~~~~~l~~lh--la~~~~~v~---~~~~l~~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G--  573 (1143)
T KOG4177|consen  503 DAKKGLTPLH--LAADEDTVK---VAKILLEH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD-KLG--  573 (1143)
T ss_pred             cchhccchhh--hhhhhhhHH---HHHHHhhc-CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccC-CCC--
Confidence             677899999  999999999   99999999 99999999999999999999     9999999999999999 999  


Q ss_pred             CCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCC-----ccc--ccchhhhhh
Q psy9384         882 KVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS-----EYF--VHYYYYYNS  954 (978)
Q Consensus       882 ~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~-----~~~--~~~~~l~~A  954 (978)
                        +||||.||..|+.+|+.+|+++||++|..|.+|.|||++|++.|+++++++|+..|+..     ...  .|.+|..++
T Consensus       574 --~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~  651 (1143)
T KOG4177|consen  574 --YTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVA  651 (1143)
T ss_pred             --CChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHH
Confidence              99999999999999999999999999999999999999999999999999999999883     222  256676554


Q ss_pred             hh
Q psy9384         955 AK  956 (978)
Q Consensus       955 ~~  956 (978)
                      ..
T Consensus       652 e~  653 (1143)
T KOG4177|consen  652 EE  653 (1143)
T ss_pred             HH
Confidence            43

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-49  Score=471.53  Aligned_cols=481  Identities=20%  Similarity=0.174  Sum_probs=363.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhc----cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHc
Q psy9384         347 LHKLCAENNINLLKTFLKSC----EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWG  421 (978)
Q Consensus       347 l~~a~~~~~~~~v~~ll~~~----~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~  421 (978)
                      |+.++..|+.+.+-.++...    .+.+....+..+.||||.|+..|+.++|+.|++.+++ ++..|..|.||||+|+..
T Consensus         6 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~   85 (682)
T PHA02876          6 LYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICII   85 (682)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCC
Confidence            77777788775433333221    2334445567789999999999999999999998776 567788899999999988


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHc--CCCCccc----CCCCCcHHHHHHH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAA--GAHVNAA----DSEGRTALIASAY  495 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~--g~~~~~~----~~~~~t~L~~A~~  495 (978)
                      ++..  ..++......+.....+.+.+..+.......+         +..|.+.  |.++...    .....++++.|+.
T Consensus        86 ~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  154 (682)
T PHA02876         86 PNVM--DIVISLTLDCDIILDIKYASIILNKHKLDEAC---------IHILKEAISGNDIHYDKINESIEYMKLIKERIQ  154 (682)
T ss_pred             CCcc--ccccccccchhhcccccHHHHHHHHHHHHHHH---------HHHHHHHhcCCcccHHhhccchhhhHHHHHHHH
Confidence            8743  33333222222223334444433333222111         3333332  2222211    1223467888888


Q ss_pred             cCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy9384         496 MGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI  575 (978)
Q Consensus       496 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~  575 (978)
                      .++.+++++|++.|++++.++..|.||||+|+     ..|+.+++++|++.|++++..+..|.+||+.|+..++.+++++
T Consensus       155 ~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa-----~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~  229 (682)
T PHA02876        155 QDELLIAEMLLEGGADVNAKDIYCITPIHYAA-----ERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA  229 (682)
T ss_pred             CCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            89999999999999998888888889999888     6788889999999888888888888889999988888999998


Q ss_pred             HHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCH-HHHHHHHHCCCccccccC
Q psy9384         576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI-DVVNQLLDRGMILGCLAG  654 (978)
Q Consensus       576 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~-~iv~~Ll~~~~~~~~~~~  654 (978)
                      |++++.+++.    +.++++.|+..++.+++++|++.|++++..+..|.||||+|+..++. +++++|++.|        
T Consensus       230 Ll~~~~~~~~----~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g--------  297 (682)
T PHA02876        230 IIDNRSNINK----NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG--------  297 (682)
T ss_pred             HHhcCCCCCC----CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC--------
Confidence            8888776643    34788888888888888888888888888888888888888888876 5888888888        


Q ss_pred             CCCCCCCCccccCCCCchHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHC-CCHHHHHHHHhhcCCCCcC
Q psy9384         655 GRQTGSLDEQHRDNCGWTPLHYAAIEG-HEEVCRALLEAGAKVDQVDNDGRAPLILAAQD-GHYHLVEMFLEQYEANVNQ  732 (978)
Q Consensus       655 ~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~iv~~Ll~~~~~~~~~  732 (978)
                            .+++.++..|.||||+|+..| ..+++++|+..|++++..|..|.||||+|+.. ++.++++.|++. |++++.
T Consensus       298 ------adin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~  370 (682)
T PHA02876        298 ------ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNA  370 (682)
T ss_pred             ------CCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCcc
Confidence                  677778888888888888888 58888888888888888888888888888875 467788888876 888888


Q ss_pred             CCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccc
Q psy9384         733 KSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHI  812 (978)
Q Consensus       733 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~  812 (978)
                      +|..|.||||+|+     ..++.+++++|+    ++|     ++++..+..|.||||.|                     
T Consensus       371 ~d~~G~TpLh~Aa-----~~~~~~iv~~Ll----~~g-----ad~~~~~~~g~T~Lh~A---------------------  415 (682)
T PHA02876        371 RDYCDKTPIHYAA-----VRNNVVIINTLL----DYG-----ADIEALSQKIGTALHFA---------------------  415 (682)
T ss_pred             CCCCCCCHHHHHH-----HcCCHHHHHHHH----HCC-----CCccccCCCCCchHHHH---------------------
Confidence            8888888888888     788888888888    888     77777765555444433                     


Q ss_pred             hhhhhhhhhhhcc-cccccchhhhcccCCCcccccccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHH
Q psy9384         813 ILFHHSFSEWLLD-VKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAA  891 (978)
Q Consensus       813 t~l~~~~A~~~g~-~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~  891 (978)
                              +..++ ..   ++++|++. |+++|.+|                             ..|    .||||+|+
T Consensus       416 --------~~~~~~~~---~vk~Ll~~-gadin~~d-----------------------------~~G----~TpLh~Aa  450 (682)
T PHA02876        416 --------LCGTNPYM---SVKTLIDR-GANVNSKN-----------------------------KDL----STPLHYAC  450 (682)
T ss_pred             --------HHcCCHHH---HHHHHHhC-CCCCCcCC-----------------------------CCC----ChHHHHHH
Confidence                    32222 33   55666666 66655554                             445    78888899


Q ss_pred             HhC-CHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCCcc
Q psy9384         892 QEG-HEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEY  944 (978)
Q Consensus       892 ~~g-~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~  944 (978)
                      ..| +.+++++|+++|+++|..|..|.||+++|+.++  +++++|+.+|++...
T Consensus       451 ~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~~  502 (682)
T PHA02876        451 KKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELRD  502 (682)
T ss_pred             HhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCCc
Confidence            877 689999999999999999999999999999876  589999999998775

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.6e-49  Score=464.61  Aligned_cols=477  Identities=18%  Similarity=0.185  Sum_probs=292.9

Q ss_pred             HHHHHHhCCH-HHHHH-----HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCcHHHHHHhc
Q psy9384         382 LNVAAHQGFV-DAVQI-----LLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD-VNCSDMGGRTALRAAAWG  454 (978)
Q Consensus       382 L~~A~~~g~~-~~v~~-----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~~~t~l~~A~~~  454 (978)
                      |..|+..|+. +++..     |+..|++....+..+.||||.|+..||.|+|+.|++.+++ ++..+..|.||||+|+..
T Consensus         6 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~   85 (682)
T PHA02876          6 LYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICII   85 (682)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCC
Confidence            6667777766 33333     4455777777788899999999999999999999999876 566778899999999988


Q ss_pred             CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCccC----CCCCCChhhhhhh
Q psy9384         455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY--DADINQQ----DNDGRTALSVSAL  528 (978)
Q Consensus       455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~----~~~~~t~l~~a~~  528 (978)
                      ++.           +..++......+.....+.+.+..+.......+++.|-+.  +.++...    .....++++.++ 
T Consensus        86 ~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i-  153 (682)
T PHA02876         86 PNV-----------MDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERI-  153 (682)
T ss_pred             CCc-----------cccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHH-
Confidence            874           2222222222222223333443333333322233333222  1121111    011122333333 


Q ss_pred             ccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL  608 (978)
Q Consensus       529 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  608 (978)
                          ..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.+||+.|+..++.++++.
T Consensus       154 ----~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~  229 (682)
T PHA02876        154 ----QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA  229 (682)
T ss_pred             ----HCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHH
Confidence                4455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCH-HHHH
Q psy9384         609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE-EVCR  687 (978)
Q Consensus       609 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~  687 (978)
                      |++.+.+++.    +.++++.|+..++.+.+++|++.|              .+++..+..|.||||+|+..++. ++++
T Consensus       230 Ll~~~~~~~~----~~~~L~~ai~~~~~~~~~~Ll~~g--------------~~vn~~d~~g~TpLh~Aa~~~~~~~iv~  291 (682)
T PHA02876        230 IIDNRSNINK----NDLSLLKAIRNEDLETSLLLYDAG--------------FSVNSIDDCKNTPLHHASQAPSLSRLVP  291 (682)
T ss_pred             HHhcCCCCCC----CcHHHHHHHHcCCHHHHHHHHHCC--------------CCCCCCCCCCCCHHHHHHhCCCHHHHHH
Confidence            5555544432    234555555555555555555555              44455555555555555555553 3555


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHCC-CHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHH
Q psy9384         688 ALLEAGAKVDQVDNDGRAPLILAAQDG-HYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIIL  766 (978)
Q Consensus       688 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~  766 (978)
                      +|++.|++++..|..|.||||+|+..| +.++++.|+.. |++++..+..|.||||+|+.    ..++.+++++|+    
T Consensus       292 lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~----~~~~~~iv~lLl----  362 (682)
T PHA02876        292 KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQAST----LDRNKDIVITLL----  362 (682)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHH----hCCcHHHHHHHH----
Confidence            555555555555555555555555555 35555555554 55555555555555555551    123445555555    


Q ss_pred             hcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCccccc
Q psy9384         767 SSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAV  846 (978)
Q Consensus       767 ~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~  846 (978)
                      +.|     ++++..|.                           .|.||||  +|+..|+.+   ++++|++. |++++..
T Consensus       363 ~~g-----adin~~d~---------------------------~G~TpLh--~Aa~~~~~~---iv~~Ll~~-gad~~~~  404 (682)
T PHA02876        363 ELG-----ANVNARDY---------------------------CDKTPIH--YAAVRNNVV---IINTLLDY-GADIEAL  404 (682)
T ss_pred             HcC-----CCCccCCC---------------------------CCCCHHH--HHHHcCCHH---HHHHHHHC-CCCcccc
Confidence            555     55554443                           3444444  555555555   55555555 5555544


Q ss_pred             ccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCC-HHHHHHHHHcCCCCCCCcccCccHHHHHHH
Q psy9384         847 DLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGH-EDCVRLLLHYGADPKHSDHCGRNAFRVAAK  925 (978)
Q Consensus       847 ~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~-~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~  925 (978)
                                                  + ..|    .||||+|+..++ ..++++|+++|+++|.+|..|.||||+|+.
T Consensus       405 ----------------------------~-~~g----~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        405 ----------------------------S-QKI----GTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             ----------------------------C-CCC----CchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHH
Confidence                                        3 445    788888887665 578999999999999999999999999999


Q ss_pred             cC-hHHHHHHHHHcCCCCccc--ccchhhhhhhhcChhHHHHHHHhhcCCCC
Q psy9384         926 SG-HETVLRLLKQYADDSEYF--VHYYYYYNSAKSGHETVLRLLKQYADDIP  974 (978)
Q Consensus       926 ~~-~~~~v~~L~~~g~~~~~~--~~~~~l~~A~~~~~~~~~~~L~~~~~~~~  974 (978)
                      .| +.+++++|+++|+++|..  .|.||++.|+.++  ++++.|+.+|.+.+
T Consensus       452 ~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        452 KNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             hCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence            77 789999999999999985  4889999999765  68999999997765

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-48  Score=441.21  Aligned_cols=453  Identities=18%  Similarity=0.152  Sum_probs=333.4

Q ss_pred             HHHHHHHHHhccCCCccccCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH----HHHH
Q psy9384         356 INLLKTFLKSCEALDLELVDKHGQTALNVAAHQ---GFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS----AVVK  428 (978)
Q Consensus       356 ~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~----~iv~  428 (978)
                      ++.|+.++.  .+.+.+..|.+|.||||+||..   |+.++|++|++.|++++.++..|.||||+|+..|+.    ++++
T Consensus        12 ~~~~~~l~~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLR--DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHh--ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            567888887  7777788899999999997655   889999999999999999999999999999999985    4567


Q ss_pred             HHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHH
Q psy9384         429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA--YMGHADIVSSIL  506 (978)
Q Consensus       429 ~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll  506 (978)
                      .|++.+...+..+  ..++++.|+.+++.++         +++|+++|+++|..+..|.|||+.++  ..|+.+++++|+
T Consensus        90 ~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~---------vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi  158 (661)
T PHA02917         90 ALLEATGYSNIND--FNIFSYMKSKNVDVDL---------IKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFI  158 (661)
T ss_pred             HHHhccCCCCCCC--cchHHHHHhhcCCHHH---------HHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHH
Confidence            8888754444433  2367788999999999         99999999999999999999999654  578999999999


Q ss_pred             HcCCCCccCCC---CC-----------CChhhhhhhccC------CCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy9384         507 EYDADINQQDN---DG-----------RTALSVSALCVP------SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF  566 (978)
Q Consensus       507 ~~g~~~~~~~~---~~-----------~t~l~~a~~~~~------~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~  566 (978)
                      ++|++++..+.   .|           .||||+|+....      ...++.+++++|++.|++++.++..|.||||+|+.
T Consensus       159 ~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        159 ENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIK  238 (661)
T ss_pred             HcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHH
Confidence            99999986543   23           488888863110      12357788888888888888888888888888888


Q ss_pred             cCCH--HHHHHHHhCCCCcc----CCCCCCCcHHHHHHH-------c--CCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q psy9384         567 EGHR--DVCEILLENEADQD----HIDKSGRTPLWAAAS-------M--GHASCVALLLFWGAYVDTIDAEGRTVLSVAA  631 (978)
Q Consensus       567 ~~~~--~iv~~Ll~~g~~~~----~~~~~~~t~L~~A~~-------~--~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~  631 (978)
                      +|+.  +++++|++ |++++    ..+..+.+|++.|+.       +  .+.+++++|++.|++      .+.+++++++
T Consensus       239 ~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~------~~~~~~~~~~  311 (661)
T PHA02917        239 SSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP------HGIMCSIVPL  311 (661)
T ss_pred             cCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC------CceeEeeecc
Confidence            8874  68888874 76654    234456677777763       1  167888888888874      3456677777


Q ss_pred             HcCCHHHHHHHHHC-CCccccccCCCCCCCCCccccCCCCchHHH---HHHHcCC--HHHHHHHHhCCCCCCCCCCCCCc
Q psy9384         632 AQGNIDVVNQLLDR-GMILGCLAGGRQTGSLDEQHRDNCGWTPLH---YAAIEGH--EEVCRALLEAGAKVDQVDNDGRA  705 (978)
Q Consensus       632 ~~~~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~---~A~~~~~--~~~v~~Ll~~g~~~~~~d~~g~t  705 (978)
                      ..++.+++++++.. +                       +.+++|   .++..|.  .+++++|+++|++++..+..|.+
T Consensus       312 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~  368 (661)
T PHA02917        312 WRNDKETISLILKTMN-----------------------SDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYF  368 (661)
T ss_pred             cccchHHHHHHHHHhc-----------------------hHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccc
Confidence            88888888888742 3                       223434   3344555  55888888888888888877877


Q ss_pred             HHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCC
Q psy9384         706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN  785 (978)
Q Consensus       706 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~  785 (978)
                      +.    ...+.++++.|+.+.|++++..+.+|.||||.|++.   ..++.+...+..    .+|                
T Consensus       369 ~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~---~~~~~~~~~~~~----~~~----------------  421 (661)
T PHA02917        369 RN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKS---NYGCYNFYTYTY----KKG----------------  421 (661)
T ss_pred             hh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHh---cccchhhhhhhh----hhc----------------
Confidence            43    355677777777755777777677788888888732   122233332222    222                


Q ss_pred             ccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhh
Q psy9384         786 PHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATD  865 (978)
Q Consensus       786 t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~  865 (978)
                                                ...    .+...+..+   ++++|+++ |+++|.+|..|               
T Consensus       422 --------------------------~~~----~~~~~~~~~---~v~~Ll~~-GAdIN~kd~~G---------------  452 (661)
T PHA02917        422 --------------------------LCD----MSYACPILS---TINICLPY-LKDINMIDKRG---------------  452 (661)
T ss_pred             --------------------------cch----hhhhhhhHH---HHHHHHHC-CCCCCCCCCCC---------------
Confidence                                      111    112223455   66777777 66666655544               


Q ss_pred             hccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHH-cChHHHHHHHHHcCCCCcc
Q psy9384         866 EHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAK-SGHETVLRLLKQYADDSEY  944 (978)
Q Consensus       866 ~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~-~~~~~~v~~L~~~g~~~~~  944 (978)
                                        .||||+|+..++.+++++|+++|+++|.+|..|.|||++|+. .++.+++++|+++|++.+.
T Consensus       453 ------------------~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~  514 (661)
T PHA02917        453 ------------------ETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDC  514 (661)
T ss_pred             ------------------cCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhH
Confidence                              778888888888899999999999999888889999999885 6788899999998888875


Q ss_pred             c
Q psy9384         945 F  945 (978)
Q Consensus       945 ~  945 (978)
                      .
T Consensus       515 i  515 (661)
T PHA02917        515 V  515 (661)
T ss_pred             H
Confidence            3

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-46  Score=429.66  Aligned_cols=445  Identities=14%  Similarity=0.091  Sum_probs=313.1

Q ss_pred             HHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH----HHHHH
Q psy9384         500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR----DVCEI  575 (978)
Q Consensus       500 ~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~----~iv~~  575 (978)
                      +.++.|+..|..++..+.+|+||||+|+.  +...++.+++++|++.|++++..+..|.||||.|+..|+.    ++++.
T Consensus        13 ~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~--~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         13 DELKQMLRDRDPNDTRNQFKNNALHAYLF--NEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHHHhccCcccccCCCCCcHHHHHHH--hhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            34445555555555445555555555431  0123445555555555555555555566666666665553    33455


Q ss_pred             HHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHHCCCcccccc
Q psy9384         576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA--AQGNIDVVNQLLDRGMILGCLA  653 (978)
Q Consensus       576 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~--~~~~~~iv~~Ll~~~~~~~~~~  653 (978)
                      |++.+...+..+.  ..+++.|+.+++.+++++|+++|++++..+..|.||||.++  ..|+.+++++|+++|++++...
T Consensus        91 Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917         91 LLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             HHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence            5554332232221  24555666666777777777777777777777777776433  3567777777777774332110


Q ss_pred             CCCCCCCCCccccCCCCchHHHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH--HHHH
Q psy9384         654 GGRQTGSLDEQHRDNCGWTPLHYAAI-----------EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY--HLVE  720 (978)
Q Consensus       654 ~~~~~~~~~~~~~~~~g~t~L~~A~~-----------~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--~iv~  720 (978)
                      .....+..........+.||||+|+.           .++.+++++|+++|+++|..|..|.||||+|+.+|+.  ++|+
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence            00000000011122345699999986           4689999999999999999999999999999999985  7999


Q ss_pred             HHHhhcCCCCc----CCCCCCCcHHHHHHh--cc--cchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHH
Q psy9384         721 MFLEQYEANVN----QKSHDGRTALRVNMK--NV--TKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQE  792 (978)
Q Consensus       721 ~Ll~~~~~~~~----~~~~~g~t~L~~a~~--~~--~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  792 (978)
                      +|++  |++++    ..+..|.+|+++|+.  +.  .....+.+++++|+    +.|     ++      .+.++++.++
T Consensus       249 ~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li----~~G-----a~------~~~~~~~~~~  311 (661)
T PHA02917        249 LLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFL----ENG-----KP------HGIMCSIVPL  311 (661)
T ss_pred             HHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHH----hCC-----CC------CceeEeeecc
Confidence            9974  88775    356678888888882  11  00134889999999    999     53      3567889999


Q ss_pred             hhchHHHHHHHHHhcccccchhhhhhh-hhhhcc--cccccchhhhcccCCCcccccccccccccccccc-hhhhhhh-c
Q psy9384         793 YKKRLHILRKIISIANNEHIILFHHSF-SEWLLD--VKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-VPSATDE-H  867 (978)
Q Consensus       793 ~~g~~~i~~~l~~~~~~~~~t~l~~~~-A~~~g~--~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-~v~~L~~-~  867 (978)
                      ..+..++++++++.  ..+.+++++.. ++..|.  .+   ++++|++. |++++.++..|.++...... ++++|+. .
T Consensus       312 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~~~---~v~~Ll~~-GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~  385 (661)
T PHA02917        312 WRNDKETISLILKT--MNSDVLQHILIEYMTFGDIDIP---LVECMLEY-GAVVNKEAIHGYFRNINIDSYTMKYLLKKE  385 (661)
T ss_pred             cccchHHHHHHHHH--hchHHHHHHHHHHHHcCCCcHH---HHHHHHHc-CCCCCCCCccccchhhcCCHHHHHHHHHhc
Confidence            99999999999863  23445555222 334554  56   99999999 99999999999987532222 7777776 6


Q ss_pred             cCCchhhhhhhCCCCCCchHHHHHHhC-----------------------CHHHHHHHHHcCCCCCCCcccCccHHHHHH
Q psy9384         868 FSRDTHMRIILGSSKVGEKISIAAQEG-----------------------HEDCVRLLLHYGADPKHSDHCGRNAFRVAA  924 (978)
Q Consensus       868 g~~~~~~~~~~g~~~~~t~L~~A~~~g-----------------------~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~  924 (978)
                      |++++..+ ..|    .||||.|++.+                       ..++|++|+++|||+|.+|..|.||||+|+
T Consensus       386 ga~~~~~~-~~G----~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa  460 (661)
T PHA02917        386 GGDAVNHL-DDG----EIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAV  460 (661)
T ss_pred             CCCccccC-CCC----CChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence            99888877 679    99999997543                       367889999999999999999999999999


Q ss_pred             HcChHHHHHHHHHcCCCCccc--ccchhhhhhhh-cChhHHHHHHHhhcCCCCCC
Q psy9384         925 KSGHETVLRLLKQYADDSEYF--VHYYYYYNSAK-SGHETVLRLLKQYADDIPVV  976 (978)
Q Consensus       925 ~~~~~~~v~~L~~~g~~~~~~--~~~~~l~~A~~-~~~~~~~~~L~~~~~~~~~~  976 (978)
                      ..++.+++++|+++|++++..  .|.|||+.|+. .++.+++++|++++.++.++
T Consensus       461 ~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~i  515 (661)
T PHA02917        461 RYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDCV  515 (661)
T ss_pred             HcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhHH
Confidence            999999999999999999985  48999999996 78999999999999988644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=399.18  Aligned_cols=357  Identities=21%  Similarity=0.247  Sum_probs=315.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAH--QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG  422 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g  422 (978)
                      -+++.++..++.+.++.+++.  .     ....+.++||.++.  .++.++|++|+++|++++.+|..|.||||+|+..|
T Consensus        11 ~sl~~~~~~~n~~~~~~~l~~--~-----~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g   83 (446)
T PHA02946         11 LSLYAKYNSKNLDVFRNMLQA--I-----EPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKIN   83 (446)
T ss_pred             HHHHHHHccCcHHHHHHHHhc--c-----CCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcC
Confidence            356788888999999999972  1     12234789998875  44788999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC--ceeeeeccchHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHcCCH
Q psy9384         423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNA-ADSEGRTALIASAYMGHA  499 (978)
Q Consensus       423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~--~~i~~~~~~~~vv~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~~~  499 (978)
                      +.+++++|+++|++++.++..|.||||+|+..++  .++         +++|+++|++++. .+..|.|||+ |+..++.
T Consensus        84 ~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~---------v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~  153 (446)
T PHA02946         84 NNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIER---------INLLVQYGAKINNSVDEEGCGPLL-ACTDPSE  153 (446)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHH---------HHHHHHcCCCcccccCCCCCcHHH-HHHCCCh
Confidence            9999999999999999999999999999987664  455         9999999999995 5888999997 6667999


Q ss_pred             HHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHH
Q psy9384         500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG--HRDVCEILL  577 (978)
Q Consensus       500 ~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~--~~~iv~~Ll  577 (978)
                      +++++|+++|++++..+..|+||||.|+..   ..+..+++++|++.|++++.++..|.||||+|+..+  +.+++++|+
T Consensus       154 ~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~---~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl  230 (446)
T PHA02946        154 RVFKKIMSIGFEARIVDKFGKNHIHRHLMS---DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL  230 (446)
T ss_pred             HHHHHHHhccccccccCCCCCCHHHHHHHh---cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence            999999999999999999999999998742   455678999999999999999999999999999986  789999998


Q ss_pred             hCCCCccCCCCCCCcHHHHHHHcCC-HHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCC
Q psy9384         578 ENEADQDHIDKSGRTPLWAAASMGH-ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR  656 (978)
Q Consensus       578 ~~g~~~~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~  656 (978)
                      + |++++..+..|.||||+|+..++ .++++.|+++|...+     ++ .++.|+..+..++++.+.++|.         
T Consensus       231 ~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~-~~~~a~~~~~~~~~e~l~~~g~---------  294 (446)
T PHA02946        231 P-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQ-TVNICIFYDRDDVLEIINDKGK---------  294 (446)
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-----Cc-HHHHHHHcCchHHHHHHHHcCc---------
Confidence            5 89999999999999999999988 589999999986543     23 3889999999999999998771         


Q ss_pred             CCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCC
Q psy9384         657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD  736 (978)
Q Consensus       657 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~  736 (978)
                                 ..|.||||+|+.+|+.+++++|+++|+       .|.||||+|+.+++.+++++|+.+ |++++.. ..
T Consensus       295 -----------~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~~-~~  354 (446)
T PHA02946        295 -----------QYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFN-HFSVDSV-VN  354 (446)
T ss_pred             -----------ccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHC-CCCCCCc-cc
Confidence                       347799999999999999999999875       478999999999999999999998 9999986 68


Q ss_pred             CCcHHHHHHhcccchhHHHHHHHHHH
Q psy9384         737 GRTALRVNMKNVTKLSFWYLLIQPLL  762 (978)
Q Consensus       737 g~t~L~~a~~~~~~~~~~~~~~~~Ll  762 (978)
                      |.||||+|+     ..++.++++.|+
T Consensus       355 G~t~l~~a~-----~~~~~~~~~~ll  375 (446)
T PHA02946        355 GHTCMSECV-----RLNNPVILSKLM  375 (446)
T ss_pred             cccHHHHHH-----HcCCHHHHHHHH
Confidence            999999999     899999999999

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4e-44  Score=394.68  Aligned_cols=382  Identities=19%  Similarity=0.204  Sum_probs=316.1

Q ss_pred             HHHHHHHHHhccCCCcc-ccCCCCCcHHHHHHHhC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHH
Q psy9384         356 INLLKTFLKSCEALDLE-LVDKHGQTALNVAAHQG---FVDAVQILLEAGANINHTDCEGWTPLRSASWGG--HSAVVKL  429 (978)
Q Consensus       356 ~~~v~~ll~~~~~~~~~-~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g--~~~iv~~  429 (978)
                      ...++..++.|.  +++ ..|..|.||||+|+..|   +.++|++|+++|++++.+|..|+||||+|+..+  +.|+|++
T Consensus        20 ~~~~~~~~~~~~--~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~   97 (672)
T PHA02730         20 YKKIKLEIETCH--NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHL   97 (672)
T ss_pred             HHHHHHHHHHhc--chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHH
Confidence            456777777433  444 78889999999999997   599999999999999999999999999999977  7999999


Q ss_pred             HHhCCC--CCCcCCCCCCcHHHHHHh--cCCceeeeeccchHHHHHHHH-cCCCCcccC-----CCCCcHHHHHHHcCCH
Q psy9384         430 LLQSGA--DVNCSDMGGRTALRAAAW--GGHLEVTIVLGPLCVVKLLLA-AGAHVNAAD-----SEGRTALIASAYMGHA  499 (978)
Q Consensus       430 Ll~~g~--~~~~~~~~~~t~l~~A~~--~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~-----~~~~t~L~~A~~~~~~  499 (978)
                      |+++|+  +++..+..+.+|++.++.  +++.++         +++|+. .+++++...     ..|.+|++.+...++.
T Consensus        98 Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~---------vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~  168 (672)
T PHA02730         98 LISSYSNASNELTSNINDFDLYSYMSSDNIDLRL---------LKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRP  168 (672)
T ss_pred             HHhcCCCCCcccccccCCchHHHHHHhcCCcHHH---------HHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCch
Confidence            999975  447777778899999988  777777         999996 667877653     3788999999999999


Q ss_pred             HHHHHHHHcCCCCcc-------CCCCCC-Chhhhhhhc-cCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHcC
Q psy9384         500 DIVSSILEYDADINQ-------QDNDGR-TALSVSALC-VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV--AAFEG  568 (978)
Q Consensus       500 ~~v~~Ll~~g~~~~~-------~~~~~~-t~l~~a~~~-~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~--a~~~~  568 (978)
                      ++|++|+++|++++.       .+.... +.|++.++. ..+..+..+++++|+++|+++|.++..|.||||+  +...+
T Consensus       169 eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~  248 (672)
T PHA02730        169 EVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTI  248 (672)
T ss_pred             HHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcc
Confidence            999999999999951       222333 444434432 2246788999999999999999999999999995  55567


Q ss_pred             CHHHHHHHHh--------------------------------CCCCccC--------------------CCCCCCc----
Q psy9384         569 HRDVCEILLE--------------------------------NEADQDH--------------------IDKSGRT----  592 (978)
Q Consensus       569 ~~~iv~~Ll~--------------------------------~g~~~~~--------------------~~~~~~t----  592 (978)
                      +.+++++|++                                +|++...                    .+..|.+    
T Consensus       249 ~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~  328 (672)
T PHA02730        249 DIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYII  328 (672)
T ss_pred             cHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHH
Confidence            7999999999                                6777644                    3334433    


Q ss_pred             -----------------HHHHHHHcC---CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCc
Q psy9384         593 -----------------PLWAAASMG---HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN----IDVVNQLLDRGMI  648 (978)
Q Consensus       593 -----------------~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~----~~iv~~Ll~~~~~  648 (978)
                                       .|+.-...+   +.+++++|+++|++++.. ..|.||||+|+..++    .+++++|+++|+.
T Consensus       329 ~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~  407 (672)
T PHA02730        329 DNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH  407 (672)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC
Confidence                             566666644   689999999999999975 789999999998875    8999999999832


Q ss_pred             cccccCCCCCCCCCccccCCCCchHHHH---HHHcC---------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH
Q psy9384         649 LGCLAGGRQTGSLDEQHRDNCGWTPLHY---AAIEG---------HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY  716 (978)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~---A~~~~---------~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  716 (978)
                                  .+++.++..|.||||.   |...+         ..+++++|+.+|+++|.+|..|.||||+|+..++.
T Consensus       408 ------------~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~  475 (672)
T PHA02730        408 ------------MAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNI  475 (672)
T ss_pred             ------------ccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCH
Confidence                        3688899999999984   33222         23579999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCcCCCC-CCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384         717 HLVEMFLEQYEANVNQKSH-DGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL  769 (978)
Q Consensus       717 ~iv~~Ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~  769 (978)
                      +++++|+++ |++++.++. .|.||||+|+..   ..++.+++++|+    ++|
T Consensus       476 eive~LI~~-GAdIN~~d~~~g~TaL~~Aa~~---~~~~~eIv~~LL----s~g  521 (672)
T PHA02730        476 QFARRLLEY-GASVNTTSRSIINTAIQKSSYR---RENKTKLVDLLL----SYH  521 (672)
T ss_pred             HHHHHHHHC-CCCCCCCCCcCCcCHHHHHHHh---hcCcHHHHHHHH----HcC
Confidence            999999997 999999997 599999999822   246899999999    999

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=391.82  Aligned_cols=361  Identities=19%  Similarity=0.238  Sum_probs=317.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384         490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH  569 (978)
Q Consensus       490 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~  569 (978)
                      +..++..++.+.++.+++....     ..+.++||.++..   .....+++++|++.|++++.++..|.||||+|+..|+
T Consensus        13 l~~~~~~~n~~~~~~~l~~~~~-----~g~~~~Lh~~~~~---~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~   84 (446)
T PHA02946         13 LYAKYNSKNLDVFRNMLQAIEP-----SGNYHILHAYCGI---KGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINN   84 (446)
T ss_pred             HHHHHccCcHHHHHHHHhccCC-----CCCChHHHHHHHh---cCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCC
Confidence            5778888999999999975321     1235788876522   4567899999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384         570 RDVCEILLENEADQDHIDKSGRTPLWAAASMG--HASCVALLLFWGAYVDT-IDAEGRTVLSVAAAQGNIDVVNQLLDRG  646 (978)
Q Consensus       570 ~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~~  646 (978)
                      .+++++|+++|++++..+..|.||||+|+..+  ..+++++|+++|++++. .+..|.|||+ |+..++.+++++|++.|
T Consensus        85 ~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g  163 (446)
T PHA02946         85 NRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG  163 (446)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc
Confidence            99999999999999999999999999998866  47999999999999995 6889999997 66779999999999999


Q ss_pred             CccccccCCCCCCCCCccccCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC--CHHHHHHH
Q psy9384         647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG--HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG--HYHLVEMF  722 (978)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~--~~~iv~~L  722 (978)
                                    .+++.++..|+||||+|+..+  +.+++++|+++|++++..|..|.||||+|+..+  +.+++++|
T Consensus       164 --------------ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lL  229 (446)
T PHA02946        164 --------------FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLL  229 (446)
T ss_pred             --------------ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHH
Confidence                          788899999999999988755  479999999999999999999999999999986  88999999


Q ss_pred             HhhcCCCCcCCCCCCCcHHHHHHhcccchhHH-HHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHH
Q psy9384         723 LEQYEANVNQKSHDGRTALRVNMKNVTKLSFW-YLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILR  801 (978)
Q Consensus       723 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~  801 (978)
                      ++  |++++.+|..|.||||+|+     ..++ .+++++|+    ++|     +..+     +.+ ++.|+..+..++++
T Consensus       230 l~--gadin~~d~~G~TpLh~A~-----~~~~~~~~~~~Ll----~~g-----~~~~-----~~~-~~~a~~~~~~~~~e  287 (446)
T PHA02946        230 LP--STDVNKQNKFGDSPLTLLI-----KTLSPAHLINKLL----STS-----NVIT-----DQT-VNICIFYDRDDVLE  287 (446)
T ss_pred             Hc--CCCCCCCCCCCCCHHHHHH-----HhCChHHHHHHHH----hCC-----CCCC-----CcH-HHHHHHcCchHHHH
Confidence            85  8999999999999999999     6655 58999999    888     4433     333 78888889999999


Q ss_pred             HHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhccCCchhhhhhhCCC
Q psy9384         802 KIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSS  881 (978)
Q Consensus       802 ~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~  881 (978)
                      .+.+++...|.||||  +|+..|+.+   ++++|+++ |+                                    .|  
T Consensus       288 ~l~~~g~~~~~TpLh--~Aa~~g~~e---ivk~Ll~~-~~------------------------------------~~--  323 (446)
T PHA02946        288 IINDKGKQYDSTDFK--MAVEVGSIR---CVKYLLDN-DI------------------------------------IC--  323 (446)
T ss_pred             HHHHcCcccCCCHHH--HHHHcCCHH---HHHHHHHC-CC------------------------------------cc--
Confidence            999998888999999  999999999   99999988 42                                    23  


Q ss_pred             CCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCC
Q psy9384         882 KVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS  942 (978)
Q Consensus       882 ~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~  942 (978)
                        .||||+|+..|+.++|++|+.+|+++|.. ..|.|||++|+++++.++++.|+.+..+.
T Consensus       324 --~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~~  381 (446)
T PHA02946        324 --EDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPTS  381 (446)
T ss_pred             --ccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCccH
Confidence              78999999999999999999999999986 58999999999999999999999955433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.2e-43  Score=392.74  Aligned_cols=406  Identities=14%  Similarity=0.132  Sum_probs=308.0

Q ss_pred             HcCCHHHHHHHHHcC-CCCccC-CCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC--H
Q psy9384         495 YMGHADIVSSILEYD-ADINQQ-DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH--R  570 (978)
Q Consensus       495 ~~~~~~~v~~Ll~~g-~~~~~~-~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~--~  570 (978)
                      +.++.+++++|+++| ++++.. +..|.||||.|+..   ..++.+++++|++.|++++.++..|.||||+|+..|+  .
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n---~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGN---MYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHh---ccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCH
Confidence            458889999999999 999988 88899999987521   3456899999999999999999999999999999985  4


Q ss_pred             HHHHHHHhCCCCccCCCCCCCcHHHHHH---HcCCHHHHHHHHHCCCCCcccCCCCCcHHH---HHHHcCCHHHHHHHHH
Q psy9384         571 DVCEILLENEADQDHIDKSGRTPLWAAA---SMGHASCVALLLFWGAYVDTIDAEGRTVLS---VAAAQGNIDVVNQLLD  644 (978)
Q Consensus       571 ~iv~~Ll~~g~~~~~~~~~~~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~---~A~~~~~~~iv~~Ll~  644 (978)
                      +++++|+++|++++.++..|.||||.|+   .+++.++++.+++.+......  ....+++   .|+..|+.+++++|++
T Consensus       228 eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~--~~~~~L~~~i~AA~~g~leiVklLLe  305 (764)
T PHA02716        228 SVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK--NIPMILHSYITLARNIDISVVYSFLQ  305 (764)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc--cchhhhHHHHHHHHcCCHHHHHHHHh
Confidence            8999999999999999999999999875   467889999998864332211  1122333   4788899999999999


Q ss_pred             CCCccccccCCCCCCCCCccccCCCCchHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH----------
Q psy9384         645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI--EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQ----------  712 (978)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~----------  712 (978)
                      +|              .+++.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+.          
T Consensus       306 ~G--------------AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~  371 (764)
T PHA02716        306 PG--------------VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDP  371 (764)
T ss_pred             CC--------------CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccc
Confidence            99              7888889999999998764  467899999999999999999999999998865          


Q ss_pred             ----CCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccc
Q psy9384         713 ----DGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHI  788 (978)
Q Consensus       713 ----~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l  788 (978)
                          .++.+++++|+++ |++++.++..|.||||.++.... ..++.+++++|+    +.+     +.....+       
T Consensus       372 ~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~-n~~~~dIvklLi----s~~-----~~~~~~~-------  433 (764)
T PHA02716        372 ETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQ-NYMYYDIIDCLI----SDK-----VLNMVKH-------  433 (764)
T ss_pred             cccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHH-hcChHHHHHHHH----hCc-----chhhhhh-------
Confidence                3688999999997 99999999999999984321000 345789999999    666     3322221       


Q ss_pred             hHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhcc
Q psy9384         789 SRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHF  868 (978)
Q Consensus       789 ~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g  868 (978)
                               +.++.++...+..+.. +|  .++..++.+   ...++... .. .+      .++.+.   ++..+..++
T Consensus       434 ---------~~~q~ll~~~d~~~~~-lh--h~~a~~~~~---~~~~~~~~-~~-~~------~~~~~~---v~~~~ii~~  487 (764)
T PHA02716        434 ---------RILQDLLIRVDDTPCI-IH--HIIAKYNIP---TDLYTDEY-EP-YD------STKIHD---VYHCAIIER  487 (764)
T ss_pred             ---------hhhhhhhhccCcchhh-HH--HHHHhcCcc---hhhhhhhh-hh-cc------ccccch---hhHHHHHhh
Confidence                     1222233333322222 34  455555555   44444333 10 00      011111   344455667


Q ss_pred             CCchhhhhhhCCCCCCchHHHHHHhCCHH-----HHHHHHHcCCCCCCCcccCccHHHHHHHcChH-----HHHHHHHHc
Q psy9384         869 SRDTHMRIILGSSKVGEKISIAAQEGHED-----CVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE-----TVLRLLKQY  938 (978)
Q Consensus       869 ~~~~~~~~~~g~~~~~t~L~~A~~~g~~~-----iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-----~~v~~L~~~  938 (978)
                      .+++..+ ..|    .||||+|+..|+.+     ++++|++.|+|+|.+|..|.||||+|+++|+.     ++|++|+++
T Consensus       488 ~nvN~~D-~~G----~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~  562 (764)
T PHA02716        488 YNNAVCE-TSG----MTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDK  562 (764)
T ss_pred             ccccccC-CCC----CCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhc
Confidence            7788777 888    99999999998774     45999999999999999999999999999976     999999999


Q ss_pred             CCCCcccccchhhhhhhhcChhHHHHHHHhhcCC
Q psy9384         939 ADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADD  972 (978)
Q Consensus       939 g~~~~~~~~~~~l~~A~~~~~~~~~~~L~~~~~~  972 (978)
                      |++++..    .+..|..+++.+++++|..++.-
T Consensus       563 ga~~~~~----~l~~~~~~~~~~~~~ll~~~~~~  592 (764)
T PHA02716        563 RPNVDIV----IIFLDKCYANGKFPSLLLSEDDI  592 (764)
T ss_pred             CCCcchH----HHHHHhhhhhhHHHHHHHHcchh
Confidence            9998876    47889999999999999888753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-42  Score=391.18  Aligned_cols=428  Identities=19%  Similarity=0.175  Sum_probs=328.3

Q ss_pred             cccccchhHHHHHHHhhcccchhhhhccccCCCCCCCCCCcccccccCCCchHHH---HHH--HcCCHHHHHHHHHhccC
Q psy9384         294 KDIPGTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVLH---KLC--AENNINLLKTFLKSCEA  368 (978)
Q Consensus       294 ~~lp~~l~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~---~a~--~~~~~~~v~~ll~~~~~  368 (978)
                      +++|.+.+.+|..+++.-....    ..... ..|           +..+.++++   .|+  ..++.+++++|++  .|
T Consensus       104 k~l~~~~~~~~~~~~~~~~~~~----~~~~~-~~~-----------~~~d~~~~~~y~~al~~~~v~leiVk~LLe--~G  165 (764)
T PHA02716        104 KSLVDQYKQFYKQIIKDNKSKT----ANHVF-DIP-----------NNGDMDILYTYFNSPNTRGIDLDLIKYMVD--VG  165 (764)
T ss_pred             ccCchhHHHHHHHHHHcCCchh----hhhhh-cCC-----------CcccchHHHHHHhhhcccCCCHHHHHHHHH--CC
Confidence            5799999999988887431111    01100 011           111222222   332  4589999999999  78


Q ss_pred             -CCcccc-CCCCCcHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCcCCC
Q psy9384         369 -LDLELV-DKHGQTALNVAAH--QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH--SAVVKLLLQSGADVNCSDM  442 (978)
Q Consensus       369 -~~~~~~-~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~--~~iv~~Ll~~g~~~~~~~~  442 (978)
                       ++++.. +..|.||||+|+.  +++.+++++|++.|++++.+|..|.||||+|+..|+  .++|++|+++|++++.++.
T Consensus       166 ~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~  245 (764)
T PHA02716        166 IVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV  245 (764)
T ss_pred             CCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC
Confidence             899998 8999999999875  467999999999999999999999999999999995  5999999999999999999


Q ss_pred             CCCcHHHHHH---hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHH---HHHHHcCCHHHHHHHHHcCCCCccCC
Q psy9384         443 GGRTALRAAA---WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL---IASAYMGHADIVSSILEYDADINQQD  516 (978)
Q Consensus       443 ~~~t~l~~A~---~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L---~~A~~~~~~~~v~~Ll~~g~~~~~~~  516 (978)
                      .|.||||+|+   .+++.++         ++.|++.+......  ....++   ..|+..|+.+++++|+++|++++.++
T Consensus       246 ~G~TPLh~Ai~~a~n~~~EI---------vkiLie~~d~n~~~--~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD  314 (764)
T PHA02716        246 NGMSPIMTYIINIDNINPEI---------TNIYIESLDGNKVK--NIPMILHSYITLARNIDISVVYSFLQPGVKLHYKD  314 (764)
T ss_pred             CCCCHHHHHHHhhhccCHHH---------HHHHHHhccccccc--cchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccC
Confidence            9999999886   4567777         99998865332111  112233   34788999999999999999999999


Q ss_pred             CCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--------------cCCHHHHHHHHhCCCC
Q psy9384         517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF--------------EGHRDVCEILLENEAD  582 (978)
Q Consensus       517 ~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~--------------~~~~~iv~~Ll~~g~~  582 (978)
                      ..|+||||+|+..   ..++.+++++|++.|++++.++..|.||||.|+.              .++.+++++|+++|++
T Consensus       315 ~~G~TPLH~Aaa~---~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD  391 (764)
T PHA02716        315 SAGRTCLHQYILR---HNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD  391 (764)
T ss_pred             CCCCCHHHHHHHH---hCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC
Confidence            9999999987632   3457899999999999999999999999999875              3689999999999999


Q ss_pred             ccCCCCCCCcHHHH----HHHcCCHHHHHHHHHCCCCCcccC--------CCCCc--HHHHHHHcCCHHHHHHHHHCCCc
Q psy9384         583 QDHIDKSGRTPLWA----AASMGHASCVALLLFWGAYVDTID--------AEGRT--VLSVAAAQGNIDVVNQLLDRGMI  648 (978)
Q Consensus       583 ~~~~~~~~~t~L~~----A~~~~~~~~v~~Ll~~g~~~~~~~--------~~~~t--~L~~A~~~~~~~iv~~Ll~~~~~  648 (978)
                      ++..+..|.||||.    |...++.+++++|++.|+.....+        ..+.+  .+|.++..++.+...++.+....
T Consensus       392 In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~  471 (764)
T PHA02716        392 ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPY  471 (764)
T ss_pred             CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhc
Confidence            99999999999994    333578999999999876532221        12223  35666655554444333322110


Q ss_pred             cccccC----CCCCCCCCccccCCCCchHHHHHHHcCCH-----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH---
Q psy9384         649 LGCLAG----GRQTGSLDEQHRDNCGWTPLHYAAIEGHE-----EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY---  716 (978)
Q Consensus       649 ~~~~~~----~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-----~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~---  716 (978)
                      ......    .......+.+..+..|+||||+|+..|+.     +++++|++.|+++|.+|..|.||||+|+++|+.   
T Consensus       472 ~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~  551 (764)
T PHA02716        472 DSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGH  551 (764)
T ss_pred             cccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCcccc
Confidence            000000    00011156788899999999999999876     556999999999999999999999999999977   


Q ss_pred             --HHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384         717 --HLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL  769 (978)
Q Consensus       717 --~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~  769 (978)
                        ++|+.|+++ |++++..      .++.|.     ...+.+++.+|.    .++
T Consensus       552 ~~eIvk~LL~~-ga~~~~~------~l~~~~-----~~~~~~~~~ll~----~~~  590 (764)
T PHA02716        552 QWYIVKNILDK-RPNVDIV------IIFLDK-----CYANGKFPSLLL----SED  590 (764)
T ss_pred             HHHHHHHHHhc-CCCcchH------HHHHHh-----hhhhhHHHHHHH----Hcc
Confidence              999999997 9888776      578887     778888888888    766

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-42  Score=382.25  Aligned_cols=364  Identities=18%  Similarity=0.178  Sum_probs=308.9

Q ss_pred             cccCCCchHHHHHHHcC---CHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC--CHHHHHHHHHCCCC--CCCCCCC
Q psy9384         338 MFDSKNQSVLHKLCAEN---NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG--FVDAVQILLEAGAN--INHTDCE  410 (978)
Q Consensus       338 ~~~~~~~~~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g--~~~~v~~Ll~~g~~--~~~~~~~  410 (978)
                      ..|..|.||||+|+..|   +.++|+.|++  .|++++.+|..|+||||+|+..+  +.++|++|++.|++  ++..+..
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs--~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLS--RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh--CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence            56788999999999997   5999999999  99999999999999999999976  79999999999664  4778877


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHh-CCCCCCcCCC-----CCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcc-
Q psy9384         411 GWTPLRSASW--GGHSAVVKLLLQ-SGADVNCSDM-----GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA-  481 (978)
Q Consensus       411 ~~t~L~~A~~--~g~~~iv~~Ll~-~g~~~~~~~~-----~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~-  481 (978)
                      +.+|||.++.  +++.++|++|++ .+++++...+     .|.+|++++...++.++         |++|+++|++++. 
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eI---------vklLi~~g~~v~g~  184 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEV---------LLWLLKSECYSTGY  184 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHH---------HHHHHHcCCccccc
Confidence            8899999888  999999999997 6678776533     78899999999999999         9999999999952 


Q ss_pred             ------cCCCCC-cHHHHH------HHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHh---
Q psy9384         482 ------ADSEGR-TALIAS------AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE---  545 (978)
Q Consensus       482 ------~~~~~~-t~L~~A------~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~---  545 (978)
                            .+.... +.|+++      ..+++.+++++|+++|++++.++..|.||||++..   ...++.+++++|++   
T Consensus       185 ~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~---~~~~~~eiv~~Li~~~~  261 (672)
T PHA02730        185 VFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWS---CSTIDIEIVKLLIKDVD  261 (672)
T ss_pred             ccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---cCcccHHHHHHHHhccc
Confidence                  233344 344422      46679999999999999999999999999996321   15667999999999   


Q ss_pred             -----------------------------CCCCCCC--------------------CCCCCCC-----------------
Q psy9384         546 -----------------------------KGAKVDH--------------------EDREGMT-----------------  559 (978)
Q Consensus       546 -----------------------------~g~~~~~--------------------~~~~~~t-----------------  559 (978)
                                                   +|+|...                    .+..|.+                 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~  341 (672)
T PHA02730        262 TCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDES  341 (672)
T ss_pred             cccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchh
Confidence                                         6777644                    3444444                 


Q ss_pred             ----HHHHHHHcC---CHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC----HHHHHHHHHCCC--CCcccCCCCCcH
Q psy9384         560 ----PLLVAAFEG---HRDVCEILLENEADQDHIDKSGRTPLWAAASMGH----ASCVALLLFWGA--YVDTIDAEGRTV  626 (978)
Q Consensus       560 ----~L~~a~~~~---~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~----~~~v~~Ll~~g~--~~~~~~~~~~t~  626 (978)
                          .|+.-...+   +.+++++|+++|++++.. ..|.||||.|+..++    .+++++|+++|+  +++..+..|.||
T Consensus       342 ~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~  420 (672)
T PHA02730        342 IVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLC  420 (672)
T ss_pred             HHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCch
Confidence                667677755   599999999999999975 789999999988774    899999999997  588889999999


Q ss_pred             HHH---HHHcC---------CHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCC
Q psy9384         627 LSV---AAAQG---------NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA  694 (978)
Q Consensus       627 L~~---A~~~~---------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  694 (978)
                      ||.   |...+         ..+++++|+++|              +++|.+|..|.||||+|+..++.+++++|+++|+
T Consensus       421 Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G--------------ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GA  486 (672)
T PHA02730        421 MYGLILSRFNNCGYHCYETILIDVFDILSKYM--------------DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGA  486 (672)
T ss_pred             HhHHHHHHhccccccccchhHHHHHHHHHhcc--------------cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCC
Confidence            984   33222         236799999999              8899999999999999999999999999999999


Q ss_pred             CCCCCCC-CCCcHHHHHHHC--CCHHHHHHHHhhcCCCCc
Q psy9384         695 KVDQVDN-DGRAPLILAAQD--GHYHLVEMFLEQYEANVN  731 (978)
Q Consensus       695 ~~~~~d~-~g~t~L~~A~~~--~~~~iv~~Ll~~~~~~~~  731 (978)
                      ++|..+. .|.||||+|+..  ++.++++.|+++ |++++
T Consensus       487 dIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~-ga~i~  525 (672)
T PHA02730        487 SVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY-HPTLE  525 (672)
T ss_pred             CCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc-CCCHH
Confidence            9999997 599999999974  789999999997 77764

>KOG0510|consensus

Probab=100.00  E-value=4.6e-42  Score=365.76  Aligned_cols=338  Identities=29%  Similarity=0.398  Sum_probs=240.8

Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384         372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA  451 (978)
Q Consensus       372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A  451 (978)
                      ...+..|.|++|.|+..+..      +++-+...+.|..++||||+|+.....+.++.|++.|+++...+..+.+|+|+|
T Consensus        55 ~~~~~~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A  128 (929)
T KOG0510|consen   55 PGKRAFGDTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLA  128 (929)
T ss_pred             chhhhhchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhc
Confidence            34444555555555555543      222233344555555555555555555555555555555555555555555555


Q ss_pred             HhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccC
Q psy9384         452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP  531 (978)
Q Consensus       452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  531 (978)
                      +..+..+.         .+.|+++|+++|..++.+.||||.|+..++.|..+.|++.|+++...+.++..|+|.|+    
T Consensus       129 ~~~~~~s~---------L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa----  195 (929)
T KOG0510|consen  129 ADSGNYSC---------LKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAA----  195 (929)
T ss_pred             cccchHHH---------HHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHH----
Confidence            55555555         55555555555555555555555555555555555555555555555555555555555    


Q ss_pred             CCCChHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------------ccCCCCCCC
Q psy9384         532 SSDGYAKVVSILLE-----KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD---------------QDHIDKSGR  591 (978)
Q Consensus       532 ~~~~~~~~v~~Ll~-----~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~---------------~~~~~~~~~  591 (978)
                       ..+..+.+++.+.     .+..+|..+..+.+|||.|+..|++++++.++++|..               ++..|..|.
T Consensus       196 -~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~  274 (929)
T KOG0510|consen  196 -RSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGC  274 (929)
T ss_pred             -HhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCC
Confidence             4555555555555     4445555555566666666666666666666655432               244577889


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCccccccCCCCCCCCCccccCCCC
Q psy9384         592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD-RGMILGCLAGGRQTGSLDEQHRDNCG  670 (978)
Q Consensus       592 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~g  670 (978)
                      ||||+|++.|+++.++.|+..|++++.++.++.||||.|+.+|+++.++-|++ .+.             ...|..|..|
T Consensus       275 tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~-------------rllne~D~~g  341 (929)
T KOG0510|consen  275 TPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDT-------------RLLNESDLHG  341 (929)
T ss_pred             chHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCc-------------cccccccccC
Confidence            99999999999999999999999999999999999999999999999999998 332             5677888999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCC---CCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHH
Q psy9384         671 WTPLHYAAIEGHEEVCRALLEAGAKVD---QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV  743 (978)
Q Consensus       671 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~  743 (978)
                      +||||.|+++|+..+++.|++.|+...   ..|.+|.||||.|++.|+..+|++|+.+ |++++.++..|.+++++
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccccccccc
Confidence            999999999999999999999999887   5589999999999999999999999998 99999999999999885

>KOG0510|consensus

Probab=100.00  E-value=6e-41  Score=357.26  Aligned_cols=387  Identities=23%  Similarity=0.252  Sum_probs=314.1

Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q psy9384         371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA  450 (978)
Q Consensus       371 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~  450 (978)
                      ++....+-.++.+.+...   |..+++++....++.++..|.|++|.|+..+..      ++.-+..+..|..+++|+|+
T Consensus        24 ~~~~~~d~~~~~~~~~~d---D~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~   94 (929)
T KOG0510|consen   24 IRQPVADLDSQALADTLD---DRHTLILEKNSSTPGKRAFGDTELHHASARNYI------LSKLAISYAKDSADNTPLHA   94 (929)
T ss_pred             hhhhhHHHhHHHHHhhHH---HHHHHHHHhccccchhhhhchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHH
Confidence            333334444555555544   778888888777788888889999988887765      33334455667778888888


Q ss_pred             HHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhcc
Q psy9384         451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV  530 (978)
Q Consensus       451 A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  530 (978)
                      |++....+.         +++|++.|++.+..+..+.+|+|+|+..++.+.++.|+++|++++..+..+.||||.|+   
T Consensus        95 a~~~~~~~~---------i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~---  162 (929)
T KOG0510|consen   95 AVEYNQGDK---------IQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAA---  162 (929)
T ss_pred             HhhcchHHH---------HHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHH---
Confidence            888888888         88888888888888888888888888888888888888888888888888888888888   


Q ss_pred             CCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-----CCCCccCCCCCCCcHHHHHHHcCCHHH
Q psy9384         531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE-----NEADQDHIDKSGRTPLWAAASMGHASC  605 (978)
Q Consensus       531 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~-----~g~~~~~~~~~~~t~L~~A~~~~~~~~  605 (978)
                        ..++.|..+.|++.|+++...+..|..|+|.|++.|..+..+..+.     .+..+|..+..+.+|||.|+..|+.++
T Consensus       163 --~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~  240 (929)
T KOG0510|consen  163 --RKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEM  240 (929)
T ss_pred             --hcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHH
Confidence              6677777788888888888888888888888888888888888887     566778778888888888888888888


Q ss_pred             HHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHH
Q psy9384         606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEV  685 (978)
Q Consensus       606 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  685 (978)
                      ++.+++.|.....+..+            ...-.+.|                    +|..|..|.||||+|++.|+++.
T Consensus       241 lk~~L~n~~~~a~~~~~------------~~~q~kel--------------------v~~~d~dg~tpLH~a~r~G~~~s  288 (929)
T KOG0510|consen  241 LKMCLQNGKKIADVQLD------------AMQQEKEL--------------------VNDEDNDGCTPLHYAARQGGPES  288 (929)
T ss_pred             HHHHHhCccccchhhhH------------HHHHHHHH--------------------hhcccccCCchHHHHHHcCChhH
Confidence            88888877644322211            11122222                    34578899999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHh-hcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHH
Q psy9384         686 CRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE-QYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNI  764 (978)
Q Consensus       686 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~  764 (978)
                      ++.|+..|++++.++.++.||||.|+.+|+.+.|+.|++ ......+..|..|.||||.|+     .+||..+++.|+  
T Consensus       289 vd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa-----~~gH~~v~qlLl--  361 (929)
T KOG0510|consen  289 VDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA-----KSGHDRVVQLLL--  361 (929)
T ss_pred             HHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh-----hcCHHHHHHHHH--
Confidence            999999999999999999999999999999999999999 445567888999999999999     999999999999  


Q ss_pred             HHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCccc
Q psy9384         765 ILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIH  844 (978)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~  844 (978)
                        ..|     +......                        ..|.+|.|+||  +|+..|+..   +|++|+.+ |++++
T Consensus       362 --~~G-----A~~~~~~------------------------e~D~dg~TaLH--~Aa~~g~~~---av~~Li~~-Ga~I~  404 (929)
T KOG0510|consen  362 --NKG-----ALFLNMS------------------------EADSDGNTALH--LAAKYGNTS---AVQKLISH-GADIG  404 (929)
T ss_pred             --hcC-----hhhhccc------------------------ccccCCchhhh--HHHHhccHH---HHHHHHHc-CCcee
Confidence              888     5554300                        11678889999  999999999   99999999 99999


Q ss_pred             cccccccccccc
Q psy9384         845 AVDLSQRRQTSS  856 (978)
Q Consensus       845 ~~~~~~~tpl~~  856 (978)
                      .++..|.|+++.
T Consensus       405 ~~n~~g~SA~~~  416 (929)
T KOG0510|consen  405 VKNKKGKSAFDT  416 (929)
T ss_pred             eccccccccccc
Confidence            999999999984

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-39  Score=360.80  Aligned_cols=335  Identities=24%  Similarity=0.325  Sum_probs=262.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384         346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA  425 (978)
Q Consensus       346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~  425 (978)
                      .|..|+..|+++.++.+++. .+..++..+..|.||||.|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~-~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKN-KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHc-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            57889999999999999974 45557777888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384         426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI  505 (978)
Q Consensus       426 iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~L  505 (978)
                      ++++|+++|+++...          +......++         +++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus        83 iv~~Ll~~g~~~~~~----------~~~~~~~~~---------i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~L  143 (434)
T PHA02874         83 IIKLLIDNGVDTSIL----------PIPCIEKDM---------IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML  143 (434)
T ss_pred             HHHHHHHCCCCCCcc----------hhccCCHHH---------HHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHH
Confidence            999999998876432          122233445         8899999999988888899999999999999999999


Q ss_pred             HHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccC
Q psy9384         506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH  585 (978)
Q Consensus       506 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~  585 (978)
                      +++|++++.++..|.||||+|+     ..++.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.
T Consensus       144 l~~gad~n~~d~~g~tpLh~A~-----~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        144 FEYGADVNIEDDNGCYPIHIAI-----KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             HhCCCCCCCcCCCCCCHHHHHH-----HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC
Confidence            9998888888888888888887     66778888888888888887778888888888888888888888888888877


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHCCCccccccCCCCCCCCCcc
Q psy9384         586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG-NIDVVNQLLDRGMILGCLAGGRQTGSLDEQ  664 (978)
Q Consensus       586 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~-~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  664 (978)
                      .+..|.||||.|+..+. +.+.+|+ .|++++..+..|.||||+|+..+ +.+++++|+++|              .+++
T Consensus       219 ~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g--------------ad~n  282 (434)
T PHA02874        219 KCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHK--------------ADIS  282 (434)
T ss_pred             CCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc--------------CCCC
Confidence            77778888888877654 4555554 56777777777888888877764 677788888777              6777


Q ss_pred             ccCCCCchHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCC-CcHHHHHHHCCCHHHHHH
Q psy9384         665 HRDNCGWTPLHYAAIEG-HEEVCRALLEAGAKVDQVDNDG-RAPLILAAQDGHYHLVEM  721 (978)
Q Consensus       665 ~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~d~~g-~t~L~~A~~~~~~~iv~~  721 (978)
                      .++..|.|||+.|++.+ ..++++.|+.+++.++..+..+ .+++..+...++.++.++
T Consensus       283 ~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  341 (434)
T PHA02874        283 IKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDF  341 (434)
T ss_pred             CCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchHHHH
Confidence            77777788888777766 5667777777777666555443 334555444444444333

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-38  Score=357.16  Aligned_cols=324  Identities=25%  Similarity=0.328  Sum_probs=291.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         381 ALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       381 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      .|..|+..|+.++++.|++. +..++..+..|.||||.|+..|+.++|++|+++|++++..+..+.|||+.|+..|+.++
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~i   83 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI   83 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            58899999999999999975 55578888899999999999999999999999999999999999999999999999999


Q ss_pred             eeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHH
Q psy9384         460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKV  539 (978)
Q Consensus       460 ~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  539 (978)
                               +++|+++|+++...          +......+++++|++.|++++.++..|.||||+|+     ..++.++
T Consensus        84 ---------v~~Ll~~g~~~~~~----------~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~-----~~~~~~~  139 (434)
T PHA02874         84 ---------IKLLIDNGVDTSIL----------PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAI-----KKGDLES  139 (434)
T ss_pred             ---------HHHHHHCCCCCCcc----------hhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHH-----HCCCHHH
Confidence                     99999999876432          23446789999999999999999999999999999     7899999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q psy9384         540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI  619 (978)
Q Consensus       540 v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  619 (978)
                      +++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.|++++..
T Consensus       140 v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~  219 (434)
T PHA02874        140 IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK  219 (434)
T ss_pred             HHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcC-CHHHHHHHHhCCCCCCC
Q psy9384         620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG-HEEVCRALLEAGAKVDQ  698 (978)
Q Consensus       620 ~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~  698 (978)
                      +..|.||||.|+..+. +.+++|+ .|              .+++.++..|+||||+|+..+ +.+++++|+++|++++.
T Consensus       220 ~~~g~TpL~~A~~~~~-~~i~~Ll-~~--------------~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~  283 (434)
T PHA02874        220 CKNGFTPLHNAIIHNR-SAIELLI-NN--------------ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI  283 (434)
T ss_pred             CCCCCCHHHHHHHCCh-HHHHHHH-cC--------------CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCC
Confidence            9999999999998765 5677776 45              678889999999999999875 79999999999999999


Q ss_pred             CCCCCCcHHHHHHHCC-CHHHHHHHHhhcCCCCcCCCCCC-CcHHHHHH
Q psy9384         699 VDNDGRAPLILAAQDG-HYHLVEMFLEQYEANVNQKSHDG-RTALRVNM  745 (978)
Q Consensus       699 ~d~~g~t~L~~A~~~~-~~~iv~~Ll~~~~~~~~~~~~~g-~t~L~~a~  745 (978)
                      .|..|.|||++|++.+ ..++++.|+.. +..++..+..+ .+++..+.
T Consensus       284 ~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~~~~~~~~~~~~~  331 (434)
T PHA02874        284 KDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKEADKLKDSDFLEHIE  331 (434)
T ss_pred             CCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhhccccchhHHHHHHH
Confidence            9999999999999987 67899999987 77666555444 33444444

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-37  Score=356.00  Aligned_cols=287  Identities=28%  Similarity=0.366  Sum_probs=153.4

Q ss_pred             HHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHH
Q psy9384         350 LCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG---FVDAVQILLEAGANINHTDCEGWTPLRSASWGG-HSA  425 (978)
Q Consensus       350 a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g-~~~  425 (978)
                      ++..++++++++|++  .|++++..+..|.||||+|+..|   +.+++++|++.|++++.++..|.||||+|+..| +.+
T Consensus        21 ~~~~~~~~~v~~Ll~--~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         21 NASNVTVEEVRRLLA--AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             cCCCCCHHHHHHHHH--cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence            344555555555555  55555555555555555555555   555555555555555555555555555555555 355


Q ss_pred             HHHHHHhCCCCCCcCCCCCCcHHHHHH--hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHH
Q psy9384         426 VVKLLLQSGADVNCSDMGGRTALRAAA--WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG--HADI  501 (978)
Q Consensus       426 iv~~Ll~~g~~~~~~~~~~~t~l~~A~--~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~--~~~~  501 (978)
                      ++++|+++|++++..+..|.||||+|+  ..++.++         +++|+++|++++..+..|.||||.|+..+  +.++
T Consensus        99 iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~i---------v~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~i  169 (471)
T PHA03095         99 VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKV---------IRLLLRKGADVNALDLYGMTPLAVLLKSRNANVEL  169 (471)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHH---------HHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHH
Confidence            555555555555555555555555555  2233344         55555555555555555555555555443  3445


Q ss_pred             HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy9384         502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEA  581 (978)
Q Consensus       502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~  581 (978)
                      +++|+++|++++..+..|.||||.++..   ..                                 ++.++++.|+++|+
T Consensus       170 v~~Ll~~g~~~~~~d~~g~t~Lh~~~~~---~~---------------------------------~~~~i~~~Ll~~g~  213 (471)
T PHA03095        170 LRLLIDAGADVYAVDDRFRSLLHHHLQS---FK---------------------------------PRARIVRELIRAGC  213 (471)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHH---CC---------------------------------CcHHHHHHHHHcCC
Confidence            5555555555444444444444444321   12                                 34445555555555


Q ss_pred             CccCCCCCCCcHHHHHHHcCCH--HHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384         582 DQDHIDKSGRTPLWAAASMGHA--SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG  659 (978)
Q Consensus       582 ~~~~~~~~~~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~  659 (978)
                      +++..+..|.||||.|+..++.  .+++.|++.|++++..+..|.||||+|+..|+.+++++|+++|             
T Consensus       214 ~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g-------------  280 (471)
T PHA03095        214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALG-------------  280 (471)
T ss_pred             CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-------------
Confidence            5555555555555555554432  3445555555555555555555555555555555555555555             


Q ss_pred             CCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy9384         660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD  697 (978)
Q Consensus       660 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  697 (978)
                       ++++.++..|.||||+|+..|+.++++.|++.+++++
T Consensus       281 -ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        281 -ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             -CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence             4555555555555555555555555555555555543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-37  Score=351.94  Aligned_cols=273  Identities=27%  Similarity=0.350  Sum_probs=246.1

Q ss_pred             cccccccCCCchHHHHHHHcC---CHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC-CHHHHHHHHHCCCCCCCCCC
Q psy9384         334 SRITMFDSKNQSVLHKLCAEN---NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG-FVDAVQILLEAGANINHTDC  409 (978)
Q Consensus       334 ~~~~~~~~~~~~~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~  409 (978)
                      ..++..+..|.||||.|+..+   +.++++.|++  .|++++..+..|.||||+|+..| ..+++++|++.|++++..+.
T Consensus        38 a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~--~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~  115 (471)
T PHA03095         38 ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLE--AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK  115 (471)
T ss_pred             CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC
Confidence            456778889999999999999   9999999999  89999999999999999999999 59999999999999999999


Q ss_pred             CCCcHHHHHH--HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC--ceeeeeccchHHHHHHHHcCCCCcccCCC
Q psy9384         410 EGWTPLRSAS--WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADSE  485 (978)
Q Consensus       410 ~~~t~L~~A~--~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~--~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~  485 (978)
                      .|.||||+|+  ..++.+++++|+++|++++..+..|.||||+|+..+.  .++         +++|+++|++++..+..
T Consensus       116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~i---------v~~Ll~~g~~~~~~d~~  186 (471)
T PHA03095        116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVEL---------LRLLIDAGADVYAVDDR  186 (471)
T ss_pred             CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHH---------HHHHHHcCCCCcccCCC
Confidence            9999999999  5668999999999999999999999999999998774  455         99999999999999999


Q ss_pred             CCcHHHHHHHc--CCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q psy9384         486 GRTALIASAYM--GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV  563 (978)
Q Consensus       486 ~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~  563 (978)
                      |.||||.++..  ++.++++.|+++|++++.++..|.||||+|+..   ......+++.|++.|++++..+..|.||||+
T Consensus       187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~---~~~~~~~v~~ll~~g~din~~d~~g~TpLh~  263 (471)
T PHA03095        187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATG---SSCKRSLVLPLLIAGISINARNRYGQTPLHY  263 (471)
T ss_pred             CCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc---CCchHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            99999999875  788999999999999999999999999999842   1123467888889999999999899999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q psy9384         564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID  620 (978)
Q Consensus       564 a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  620 (978)
                      |+..|+.+++++|+++|++++..+..|.|||+.|+..++.++++.|++.+++++...
T Consensus       264 A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~  320 (471)
T PHA03095        264 AAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVA  320 (471)
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999999989999999999999999999999998888776543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-36  Score=343.55  Aligned_cols=287  Identities=30%  Similarity=0.403  Sum_probs=185.6

Q ss_pred             CHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH-----HHHcCCHHHHHH
Q psy9384         355 NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRS-----ASWGGHSAVVKL  429 (978)
Q Consensus       355 ~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~-----A~~~g~~~iv~~  429 (978)
                      ...+++++++  .+...+..+..+.||||.|+..|+.++|++|++.|++++..+..+.||||+     |+..|+.+++++
T Consensus        14 ~~~~~~~~~~--~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~   91 (480)
T PHA03100         14 KVKNIKYIIM--EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKL   91 (480)
T ss_pred             HHHHHHHHHh--cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHH
Confidence            3456677776  445555566777788888888888888888888888877777777788888     888888888888


Q ss_pred             HHhCCCCCCcCCCCCCcHHHHHH--hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHH
Q psy9384         430 LLQSGADVNCSDMGGRTALRAAA--WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG--HADIVSSI  505 (978)
Q Consensus       430 Ll~~g~~~~~~~~~~~t~l~~A~--~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~--~~~~v~~L  505 (978)
                      |+++|++++..+..|.||||+|+  ..|+.++         +++|+++|++++..+..|.||||.|+..+  +.+++++|
T Consensus        92 Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~L  162 (480)
T PHA03100         92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSI---------VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLL  162 (480)
T ss_pred             HHHCCCCCCCCCCCCCchhhHHHhcccChHHH---------HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHH
Confidence            88888777777777777777777  7777777         77777777777777777777777777777  66666666


Q ss_pred             HHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccC
Q psy9384         506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH  585 (978)
Q Consensus       506 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~  585 (978)
                      +++|++++..+..|.||||+|+     ..++.+++++|++.|++++..+..+.++++.                      
T Consensus       163 l~~g~din~~d~~g~tpL~~A~-----~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~----------------------  215 (480)
T PHA03100        163 IDKGVDINAKNRYGYTPLHIAV-----EKGNIDVIKFLLDNGADINAGDIETLLFTIF----------------------  215 (480)
T ss_pred             HHCCCCcccccCCCCCHHHHHH-----HhCCHHHHHHHHHcCCCccCCCCCCCcHHHH----------------------
Confidence            6666666655555555555555     3445555555555555555444444333333                      


Q ss_pred             CCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCc
Q psy9384         586 IDKSGRTPLWAAASMGH--ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDE  663 (978)
Q Consensus       586 ~~~~~~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  663 (978)
                           .+|||.|+..++  .+++++|++.|++++..+..|.||||+|+..++.+++++|+++|              .++
T Consensus       216 -----~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g--------------ad~  276 (480)
T PHA03100        216 -----ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG--------------ANP  276 (480)
T ss_pred             -----HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------CCC
Confidence                 355555555555  55555555555555555555555555555555555555555555              445


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC
Q psy9384         664 QHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ  698 (978)
Q Consensus       664 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  698 (978)
                      +.++..|.||+++|+..++.+++++|+++|++++.
T Consensus       277 n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        277 NLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             CccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            55555555555555555555555555555554443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-36  Score=343.52  Aligned_cols=290  Identities=30%  Similarity=0.413  Sum_probs=252.0

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH-----HHhcCCceeeeec
Q psy9384         389 GFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA-----AAWGGHLEVTIVL  463 (978)
Q Consensus       389 g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~-----A~~~~~~~i~~~~  463 (978)
                      ...++++++++.+...+..+..+.||||+|+..|+.++|++|+++|++++..+..+.+|+|+     |+..++.++    
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~i----   88 (480)
T PHA03100         13 IKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEI----   88 (480)
T ss_pred             HHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHH----
Confidence            34567888888776666777888899999999999999999999999999888888999999     999998888    


Q ss_pred             cchHHHHHHHHcCCCCcccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC--hHHH
Q psy9384         464 GPLCVVKLLLAAGAHVNAADSEGRTALIASA--YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG--YAKV  539 (978)
Q Consensus       464 ~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~--~~~~  539 (978)
                           +++|+++|++++..+..|.|||++|+  ..|+.+++++|+++|++++..+..|.||||+|+     ..+  +.++
T Consensus        89 -----v~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~~i  158 (480)
T PHA03100         89 -----VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL-----ESNKIDLKI  158 (480)
T ss_pred             -----HHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHH-----HcCCChHHH
Confidence                 99999999999888888999999999  889999999999988888888888888888887     556  7777


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCccc
Q psy9384         540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI  619 (978)
Q Consensus       540 v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  619 (978)
                      +++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.++++.                       
T Consensus       159 v~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~-----------------------  215 (480)
T PHA03100        159 LKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF-----------------------  215 (480)
T ss_pred             HHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH-----------------------
Confidence            777777777777777777777777777777777777777777777777767666665                       


Q ss_pred             CCCCCcHHHHHHHcCC--HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy9384         620 DAEGRTVLSVAAAQGN--IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD  697 (978)
Q Consensus       620 ~~~~~t~L~~A~~~~~--~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  697 (978)
                          .||||.|+..++  .+++++|+++|              .+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus       216 ----~t~l~~a~~~~~~~~~iv~~Ll~~g--------------~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n  277 (480)
T PHA03100        216 ----ETPLHIAACYNEITLEVVNYLLSYG--------------VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN  277 (480)
T ss_pred             ----HhHHHHHHHhCcCcHHHHHHHHHcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                789999999999  99999999999              7888899999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCC
Q psy9384         698 QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS  734 (978)
Q Consensus       698 ~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~  734 (978)
                      ..|..|.||+++|+.+++.+++++|+++ |++++..+
T Consensus       278 ~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~  313 (480)
T PHA03100        278 LVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTII  313 (480)
T ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHH
Confidence            9999999999999999999999999997 88876543

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.7e-36  Score=325.71  Aligned_cols=243  Identities=13%  Similarity=0.080  Sum_probs=175.3

Q ss_pred             HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHcCCHHHHHHHHhCC
Q psy9384         502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV-AAFEGHRDVCEILLENE  580 (978)
Q Consensus       502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~-a~~~~~~~iv~~Ll~~g  580 (978)
                      .+.|++.|+++-. ..++.|||+...-    +.....-++.++..|..++..+..+.+++++ |..+|+.|++++|+++|
T Consensus        21 ~~~l~~~g~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~G   95 (631)
T PHA02792         21 AQSLIESGANPLY-EYDGETPLKAYVT----KKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKG   95 (631)
T ss_pred             HHHHHHcCCCccc-ccCCCccHHHHHh----hhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcC
Confidence            4667888888766 4566788887652    2233344566777777788888888888875 55678899999999999


Q ss_pred             CCccCCCCCCCcHHHHHHH-cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384         581 ADQDHIDKSGRTPLWAAAS-MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG  659 (978)
Q Consensus       581 ~~~~~~~~~~~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~  659 (978)
                      +++|.++..+.+|+++|+. .++.|++++|+++|+++...+..|.||++.-+.....--.    +.+      ..+... 
T Consensus        96 AdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~----~~~------~~~~~~-  164 (631)
T PHA02792         96 LEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNW----DDE------LDDYDY-  164 (631)
T ss_pred             CCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccch----hhh------cccccc-
Confidence            9999988888899898855 6999999999999999888888899988765432110000    000      000011 


Q ss_pred             CCCccccCCCCchHHHHHHHcC-------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC--CHHHHHHHHhhcCCCC
Q psy9384         660 SLDEQHRDNCGWTPLHYAAIEG-------HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG--HYHLVEMFLEQYEANV  730 (978)
Q Consensus       660 ~~~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~--~~~iv~~Ll~~~~~~~  730 (978)
                      ...+|..+..|.||||+|+.++       +.+++++|+.+|++++..|..|.||||+|+.+.  ..|++++|++.  +..
T Consensus       165 ~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~--~~~  242 (631)
T PHA02792        165 DYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS--NYS  242 (631)
T ss_pred             ccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc--ccc
Confidence            1345678899999999999999       899999999999999999999999999999999  88999999985  211


Q ss_pred             cCCCCCCCcHHHHHHhccc---chhHHHHHHHHHHHHHHhcC
Q psy9384         731 NQKSHDGRTALRVNMKNVT---KLSFWYLLIQPLLNIILSSL  769 (978)
Q Consensus       731 ~~~~~~g~t~L~~a~~~~~---~~~~~~~~~~~Ll~~~~~~~  769 (978)
                      .   .+....|.--+....   +..-+..++..|+    +.+
T Consensus       243 ~---~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll----~~~  277 (631)
T PHA02792        243 G---NELMNILSNYLRKQYRNKNHKIDNYIVDKLL----SGH  277 (631)
T ss_pred             c---cchHhHHHHHHHHHhccCccCccHHHHHHHH----hCC
Confidence            1   111223333332111   1124456888888    666

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-35  Score=331.31  Aligned_cols=304  Identities=24%  Similarity=0.265  Sum_probs=228.3

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      .+.||||+||..|+.++|++|+++|++++..|..|.||||+||..|+.++++.|++.+.+...  ..+.++++.|+..++
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~  113 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRN  113 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCC
Confidence            456677777777777777777777777766666677777777777777777666665543322  234455555555555


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCCh
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY  536 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  536 (978)
                      .++         +++|+..+.+..                                 ...     .+.............
T Consensus       114 ~ei---------~~~Ll~~~~~~~---------------------------------~~~-----~~~~~~~~~~~~~~~  146 (477)
T PHA02878        114 VEI---------FKIILTNRYKNI---------------------------------QTI-----DLVYIDKKSKDDIIE  146 (477)
T ss_pred             HHH---------HHHHHhCcccCc---------------------------------ccC-----cHHHHhhccchhhHH
Confidence            555         555554432211                                 000     000000000001234


Q ss_pred             HHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9384         537 AKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY  615 (978)
Q Consensus       537 ~~~v~~Ll~~g~~~~~~~~~-~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  615 (978)
                      .+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++.|++
T Consensus       147 ~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            56999999999999999888 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCccccccCCCCCCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhCC
Q psy9384         616 VDTIDAEGRTVLSVAAAQ-GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN-CGWTPLHYAAIEGHEEVCRALLEAG  693 (978)
Q Consensus       616 ~~~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g  693 (978)
                      ++..+..|.||||+|+.. ++.+++++|+++|              .+++.++. .|.||||+|  .++.+++++|+++|
T Consensus       227 in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g--------------advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g  290 (477)
T PHA02878        227 TDARDKCGNTPLHISVGYCKDYDILKLLLEHG--------------VDVNAKSYILGLTALHSS--IKSERKLKLLLEYG  290 (477)
T ss_pred             CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC--------------CCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCC
Confidence            999999999999999975 6899999999999              67777765 799999999  57889999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHCC-CHHHHHHHHhh----cCCCCcCCCCCCCcHHHHHH
Q psy9384         694 AKVDQVDNDGRAPLILAAQDG-HYHLVEMFLEQ----YEANVNQKSHDGRTALRVNM  745 (978)
Q Consensus       694 ~~~~~~d~~g~t~L~~A~~~~-~~~iv~~Ll~~----~~~~~~~~~~~g~t~L~~a~  745 (978)
                      +++|..|..|.||||+|+..+ ..++++.|+.+    ...+++.++..|..+-..++
T Consensus       291 adin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i  347 (477)
T PHA02878        291 ADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCI  347 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHH
Confidence            999999999999999999754 56677777654    24566667777766655555

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.2e-35  Score=316.83  Aligned_cols=385  Identities=13%  Similarity=0.075  Sum_probs=228.3

Q ss_pred             HHHHcCCCCcccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCC
Q psy9384         471 LLLAAGAHVNAADSEGRTALIA-SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK  549 (978)
Q Consensus       471 ~Ll~~g~~~~~~~~~~~t~L~~-A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~  549 (978)
                      .++.-|..++..+.++..++++ |..+|+.|+|++|+++|++++.++..+.+++++|+.    ..++.+++++|++.|++
T Consensus        56 ~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~----~~~~~eivk~Ll~~Gad  131 (631)
T PHA02792         56 VVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATT----SNPNVDVFKLLLDKGIP  131 (631)
T ss_pred             HHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeec----CCCChHHHHHHHHCCCC
Confidence            3333444444444444444443 233445555555555555555555545555555431    24555555555555555


Q ss_pred             CCCCCCCCCCHHHHHHHcCC-HHHHHHHH--hCCCCccCCCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCccc
Q psy9384         550 VDHEDREGMTPLLVAAFEGH-RDVCEILL--ENEADQDHIDKSGRTPLWAAASMG-------HASCVALLLFWGAYVDTI  619 (978)
Q Consensus       550 ~~~~~~~~~t~L~~a~~~~~-~~iv~~Ll--~~g~~~~~~~~~~~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~  619 (978)
                      ++..+..|.||++.-+.... .+.-+.+-  +.+..++..+..|.||||+|+.++       +.++++.|+++|++++..
T Consensus       132 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~  211 (631)
T PHA02792        132 TCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY  211 (631)
T ss_pred             cccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc
Confidence            54444555555543332111 00101111  112334455566666666666666       566666666666666666


Q ss_pred             CCCCCcHHHHHHHcC--CHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHH--c------CCHHHHHHH
Q psy9384         620 DAEGRTVLSVAAAQG--NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI--E------GHEEVCRAL  689 (978)
Q Consensus       620 ~~~~~t~L~~A~~~~--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~------~~~~~v~~L  689 (978)
                      +..|.||||+|+.+.  ..+++++|++..              ...    ...+..|+.-.+  .      =+..+|..|
T Consensus       212 d~~g~t~l~~~~~~~~i~~ei~~~L~~~~--------------~~~----~~~~~~l~~y~~~~~~~~~~~id~~iv~~l  273 (631)
T PHA02792        212 TYREHTTLYYYVDKCDIKREIFDALFDSN--------------YSG----NELMNILSNYLRKQYRNKNHKIDNYIVDKL  273 (631)
T ss_pred             CCCCChHHHHHHHcccchHHHHHHHHhcc--------------ccc----cchHhHHHHHHHHHhccCccCccHHHHHHH
Confidence            666666666666666  566666666532              000    011222221111  1      124478888


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384         690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL  769 (978)
Q Consensus       690 l~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~  769 (978)
                      ++.+-.-+.        +.......+.+++..++.++. ++      -+..||.-.++   ...+.+++++|+    ++|
T Consensus       274 l~~~~~~~i--------~~~~~~~~~~~~~~~~~~~~~-~~------~q~~l~~Yl~~---~~v~ieiIK~LI----d~G  331 (631)
T PHA02792        274 LSGHDTFYI--------LELCNSLRNNIIISSILKRYT-DS------IQDLLSEYVSY---HTVYINVIKCMI----DEG  331 (631)
T ss_pred             HhCCCccch--------hhhhhhhhhhhHHHHHHHHHh-HH------HHHHHHHHHhc---CCccHHHHHHHH----HCC
Confidence            776532111        111111112233333333311 10      11244444422   345778888888    777


Q ss_pred             CCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccc
Q psy9384         770 FPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLS  849 (978)
Q Consensus       770 ~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~  849 (978)
                           ++...                             ......++  .|+..|+.+   ++++|+++ |++++.+|..
T Consensus       332 -----a~~~r-----------------------------~~~~n~~~--~Aa~~gn~e---IVelLIs~-GADIN~kD~~  371 (631)
T PHA02792        332 -----ATLYR-----------------------------FKHINKYF--QKFDNRDPK---VVEYILKN-GNVVVEDDDN  371 (631)
T ss_pred             -----Ccccc-----------------------------CCcchHHH--HHHHcCCHH---HHHHHHHc-CCchhhhcCC
Confidence                 44321                             01223455  778889999   99999999 9999998877


Q ss_pred             c--ccccccccc--------hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccH
Q psy9384         850 Q--RRQTSSSSA--------VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNA  919 (978)
Q Consensus       850 ~--~tpl~~a~~--------~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~  919 (978)
                      |  .||||.|..        ++++|+++|++++.++ ..|    .||||+|+..++.+++++|+++|+++|.+|..|.||
T Consensus       372 g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD-~~G----~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~Tp  446 (631)
T PHA02792        372 IINIMPLFPTLSIHESDVLSILKLCKPYIDDINKID-KHG----RSILYYCIESHSVSLVEWLIDNGADINITTKYGSTC  446 (631)
T ss_pred             CCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccc-ccC----cchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            5  588887555        5788899999999999 999    999999999999999999999999999999999999


Q ss_pred             HHHHHH----------cChHHHHHHHHHcCCCCcc
Q psy9384         920 FRVAAK----------SGHETVLRLLKQYADDSEY  944 (978)
Q Consensus       920 l~~A~~----------~~~~~~v~~L~~~g~~~~~  944 (978)
                      |++|+.          ....+++++|+++|.++..
T Consensus       447 L~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~  481 (631)
T PHA02792        447 IGICVILAHACIPEIAELYIKILEIILSKLPTIEC  481 (631)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhH
Confidence            999986          2336789999999988764

>KOG0508|consensus

Probab=100.00  E-value=9.8e-35  Score=290.17  Aligned_cols=216  Identities=42%  Similarity=0.597  Sum_probs=189.6

Q ss_pred             HHHHHcCCHHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCC--------CCCCCCCCcHH
Q psy9384         348 HKLCAENNINLLKTFLKSCEALD---LELVDKHGQTALNVAAHQGFVDAVQILLEA-GANI--------NHTDCEGWTPL  415 (978)
Q Consensus       348 ~~a~~~~~~~~v~~ll~~~~~~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~--------~~~~~~~~t~L  415 (978)
                      ..|+..|.+..+..|+...+..+   .--...+|.|||-.||++|+.++|++|+++ ++++        +-..-.|.+||
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            36778888888777775211111   112356788999999999999999999994 4543        33345688999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy9384         416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY  495 (978)
Q Consensus       416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~  495 (978)
                      ..|+..||+++|+.|+++|+++|.......|||..||.-|++++         +++|+++|+|++..|..|.|.|++||+
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~lei---------vKyLvE~gad~~IanrhGhTcLmIa~y  159 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEI---------VKYLVEHGADPEIANRHGHTCLMIACY  159 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHH---------HHHHHHcCCCCcccccCCCeeEEeeec
Confidence            99999999999999999999999888888899999999999999         999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy9384         496 MGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI  575 (978)
Q Consensus       496 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~  575 (978)
                      .|+.+++++|++.|+++|.++..|+|+||.++     +.|+.+++++|+++|+.++. +..|.|||..|...|+.++|++
T Consensus       160 kGh~~I~qyLle~gADvn~ks~kGNTALH~ca-----EsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~  233 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGADVNAKSYKGNTALHDCA-----ESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVER  233 (615)
T ss_pred             cCchHHHHHHHHhCCCcchhcccCchHHHhhh-----hcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHH
Confidence            99999999999999999999999999999999     99999999999999998764 4569999999999999999999


Q ss_pred             HHh
Q psy9384         576 LLE  578 (978)
Q Consensus       576 Ll~  578 (978)
                      |++
T Consensus       234 L~~  236 (615)
T KOG0508|consen  234 LLQ  236 (615)
T ss_pred             Hhc
Confidence            997

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-34  Score=325.98  Aligned_cols=286  Identities=22%  Similarity=0.270  Sum_probs=201.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy9384         340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSAS  419 (978)
Q Consensus       340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~  419 (978)
                      ...+.+|||.|+..|+.++|++|++  .|++++..|..|.||||+||..|+.+++++|++.+.+.+.  ..+.+|++.|+
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~--~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~  109 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLT--RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAF  109 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHH
Confidence            4567899999999999999999999  8999999999999999999999999999999998765544  46789999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCC-CCcHHHHHHHcCC
Q psy9384         420 WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGH  498 (978)
Q Consensus       420 ~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~-~~t~L~~A~~~~~  498 (978)
                      ..++.+++++|+..+.+.....  ....+......+..+       .+++++|+++|++++..+.. |.||||+|+..|+
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~  180 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIE-------AEITKLLLSYGADINMKDRHKGNTALHYATENKD  180 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHH-------HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCC
Confidence            9999999999998865432111  001111111111111       11377777777777777776 7777777777777


Q ss_pred             HHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHH
Q psy9384         499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE-GHRDVCEILL  577 (978)
Q Consensus       499 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~-~~~~iv~~Ll  577 (978)
                      .+++++|+++|++++..+..|.||||.|+     ..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+
T Consensus       181 ~~iv~~Ll~~gad~n~~d~~g~tpLh~A~-----~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll  255 (477)
T PHA02878        181 QRLTELLLSYGANVNIPDKTNNSPLHHAV-----KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLL  255 (477)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHH-----HhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Confidence            77777777777777777777777777666     45666666766666666666666666666666654 4666666666


Q ss_pred             hCCCCccCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHC
Q psy9384         578 ENEADQDHIDK-SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG-NIDVVNQLLDR  645 (978)
Q Consensus       578 ~~g~~~~~~~~-~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~-~~~iv~~Ll~~  645 (978)
                      ++|++++..+. .|.||||.|  .++.+++++|++.|++++..+..|.|||+.|+..+ ..++++.|+.+
T Consensus       256 ~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        256 EHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             HcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            66666665554 466666666  34556666666666666666666666666666532 34455555543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.5e-34  Score=322.36  Aligned_cols=288  Identities=22%  Similarity=0.277  Sum_probs=178.7

Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccc
Q psy9384         388 QGFVDAVQILLEAGANINHTDCEGWTPLRSASWG--GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP  465 (978)
Q Consensus       388 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~--g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~  465 (978)
                      ....++|++|+++|+++|.. ..|.||||.++..  ++.++|++|+++|++++.++ .+.|||+.|+.++....   ...
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~---~~~   87 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITS---NKI   87 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcch---hhH
Confidence            46788888888888888887 5678888765544  36788888888888888765 46788888876654210   011


Q ss_pred             hHHHHHHHHcCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-ccCCCCCCChhhhhhhccCCCCChHHHHH
Q psy9384         466 LCVVKLLLAAGAHVNAADSEGRTALIASAYM---GHADIVSSILEYDADI-NQQDNDGRTALSVSALCVPSSDGYAKVVS  541 (978)
Q Consensus       466 ~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~-~~~~~~~~t~l~~a~~~~~~~~~~~~~v~  541 (978)
                      .+++++|+++|+++|.++..|.|||+.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..   ..++.++++
T Consensus        88 ~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~---~~~~~~iv~  164 (494)
T PHA02989         88 KKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES---FSVKKDVIK  164 (494)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh---ccCCHHHHH
Confidence            2237788888888877777777887776654   5677777777777777 66677777777766521   234567777


Q ss_pred             HHHhCCCCCCC-CCCCCCCHHHHHHHcC----CHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384         542 ILLEKGAKVDH-EDREGMTPLLVAAFEG----HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV  616 (978)
Q Consensus       542 ~Ll~~g~~~~~-~~~~~~t~L~~a~~~~----~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~  616 (978)
                      +|++.|++++. .+..|.|||+.|+..+    +.+++++|+++|++++..+..+.++++.++..+.              
T Consensus       165 ~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~--------------  230 (494)
T PHA02989        165 ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK--------------  230 (494)
T ss_pred             HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch--------------
Confidence            77777777666 4556677777665543    6667777777777666666666666665543221              


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy9384         617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV  696 (978)
Q Consensus       617 ~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  696 (978)
                                   +...+..+++++|+. +              +++|.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus       231 -------------~~~~~~~~il~~l~~-~--------------advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi  282 (494)
T PHA02989        231 -------------ILSKKEFKVLNFILK-Y--------------IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI  282 (494)
T ss_pred             -------------hhcccchHHHHHHHh-C--------------CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc
Confidence                         001122344443332 2              344444555555555555555555555555555555


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384         697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQ  725 (978)
Q Consensus       697 ~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~  725 (978)
                      +..|..|.||||+|+..|+.++++.|++.
T Consensus       283 n~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        283 YNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            55555555555555555555555555543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=321.10  Aligned_cols=279  Identities=22%  Similarity=0.303  Sum_probs=193.1

Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC--CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG--HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA  499 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~--~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~  499 (978)
                      .+.++|++|+++|+++|.. ..|.||++.++..+  +.++         +++|+++|+++|..+ .+.|||+.|+.++..
T Consensus        14 ~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~i---------v~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~   82 (494)
T PHA02989         14 VDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKI---------VKLLIDNGADVNYKG-YIETPLCAVLRNREI   82 (494)
T ss_pred             CcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHH---------HHHHHHcCCCccCCC-CCCCcHHHHHhccCc
Confidence            4455566666556555554 34555554333222  3444         555555555555443 335555554433210


Q ss_pred             HHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHH
Q psy9384         500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE---GHRDVCEIL  576 (978)
Q Consensus       500 ~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~---~~~~iv~~L  576 (978)
                                                      ...+..+++++|+++|++++.++..|.|||+.|+..   ++.+++++|
T Consensus        83 --------------------------------~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~L  130 (494)
T PHA02989         83 --------------------------------TSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFL  130 (494)
T ss_pred             --------------------------------chhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHH
Confidence                                            123455666666677776666666667777666543   456777777


Q ss_pred             HhCCCCc-cCCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHHcC----CHHHHHHHHHCCCc
Q psy9384         577 LENEADQ-DHIDKSGRTPLWAAASM--GHASCVALLLFWGAYVDT-IDAEGRTVLSVAAAQG----NIDVVNQLLDRGMI  648 (978)
Q Consensus       577 l~~g~~~-~~~~~~~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~~----~~~iv~~Ll~~~~~  648 (978)
                      +++|+++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..|.||||.|+..+    +.+++++|+++|  
T Consensus       131 l~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G--  208 (494)
T PHA02989        131 LSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG--  208 (494)
T ss_pred             HHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC--
Confidence            7777777 56666777777776543  466777777777777766 4566777777766543    777777777777  


Q ss_pred             cccccCCCCCCCCCccccCCCCchHHHHHHHc------CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q psy9384         649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE------GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF  722 (978)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~------~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~L  722 (978)
                                  .+++.++..+.++||.++..      +..+++++|+. |+++|.+|..|.||||+|+..|+.+++++|
T Consensus       209 ------------a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~L  275 (494)
T PHA02989        209 ------------VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYL  275 (494)
T ss_pred             ------------CCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHH
Confidence                        56666666777777765543      45678887665 799999999999999999999999999999


Q ss_pred             HhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHH
Q psy9384         723 LEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNI  764 (978)
Q Consensus       723 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~  764 (978)
                      ++. |++++.+|..|.||||+|+     ..++.++++.|++.
T Consensus       276 L~~-Gadin~~d~~G~TpL~~A~-----~~~~~~iv~~LL~~  311 (494)
T PHA02989        276 LKL-GDDIYNVSKDGDTVLTYAI-----KHGNIDMLNRILQL  311 (494)
T ss_pred             HHc-CCCccccCCCCCCHHHHHH-----HcCCHHHHHHHHhc
Confidence            997 9999999999999999999     88999999998864

>KOG0508|consensus

Probab=100.00  E-value=4.2e-33  Score=278.54  Aligned_cols=213  Identities=37%  Similarity=0.481  Sum_probs=186.1

Q ss_pred             HHHHhCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCC--------cCCCCCCcHHH
Q psy9384         384 VAAHQGFVDAVQILLEAGAN-----INHTDCEGWTPLRSASWGGHSAVVKLLLQS-GADVN--------CSDMGGRTALR  449 (978)
Q Consensus       384 ~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~-g~~~~--------~~~~~~~t~l~  449 (978)
                      -|++.|....+..|+....+     .-....+|.|||-.||++||.++|++|+++ ++++.        .....|.+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            67788888877777654332     112345788999999999999999999994 44433        33446789999


Q ss_pred             HHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhc
Q psy9384         450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC  529 (978)
Q Consensus       450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~  529 (978)
                      .|+..||.++         |+.|+++|+++|.......|||-.||.-|+.++|+||+++|+|++..+..|.|.|+.|+  
T Consensus        90 aAsaAGHl~v---------Vk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~--  158 (615)
T KOG0508|consen   90 AASAAGHLEV---------VKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC--  158 (615)
T ss_pred             HHhccCcHHH---------HHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee--
Confidence            9999999999         99999999999988888889999999999999999999999999999999999999999  


Q ss_pred             cCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384         530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL  609 (978)
Q Consensus       530 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~L  609 (978)
                         .+|+.+|+++|++.|+|+|.++..|.|+||.|++.|+.+++++|+++|+.+. ++..|.|||..|+..|+.++++.|
T Consensus       159 ---ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  159 ---YKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             ---ccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHH
Confidence               7899999999999999999999999999999999999999999999999877 566799999999999999999999


Q ss_pred             HH
Q psy9384         610 LF  611 (978)
Q Consensus       610 l~  611 (978)
                      ++
T Consensus       235 ~~  236 (615)
T KOG0508|consen  235 LQ  236 (615)
T ss_pred             hc
Confidence            86

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.5e-33  Score=283.48  Aligned_cols=235  Identities=21%  Similarity=0.200  Sum_probs=167.9

Q ss_pred             cCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384         353 ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ  432 (978)
Q Consensus       353 ~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  432 (978)
                      .++.+++++|++  .++  +..|..|.||||+|+..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~~~~Lis--~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSS--KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHh--CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHH
Confidence            367778888887  444  4568888888888888888888888888888877664  5788888888888888888888


Q ss_pred             CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG-RTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       433 ~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      +|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..| .||||+|+..|+.+++++|++++++
T Consensus        83 ~Gadvn~~d~~G~TpLh~Aa~~g~~ei---------vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791         83 SGMDDSQFDDKGNTALYYAVDSGNMQT---------VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence            888888888888888888888888888         888888888888777776 4788888888888888888887643


Q ss_pred             CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCccCCCCCC
Q psy9384         512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTP-LLVAAFEGHRDVCEILLENEADQDHIDKSG  590 (978)
Q Consensus       512 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~  590 (978)
                      .... ..|.||||+|+     ..|+.+++++|+++|++++.++..|.+| ||+|+..|+.+++++|+++|++++.++..+
T Consensus       154 ~~d~-~~g~TpLh~Aa-----~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~  227 (284)
T PHA02791        154 TFDL-AILLSCIHITI-----KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN  227 (284)
T ss_pred             cccc-ccCccHHHHHH-----HcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence            2110 13456666665     4555666666666666655555555544 566666666666666666666555555432


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9384         591 RTPLWAAASMGHASCVALLLFWGAY  615 (978)
Q Consensus       591 ~t~L~~A~~~~~~~~v~~Ll~~g~~  615 (978)
                       ++|      ++.|++++|+++.++
T Consensus       228 -~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        228 -VLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             -ccC------CCHHHHHHHHHhhhh
Confidence             332      555555555555443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=280.32  Aligned_cols=233  Identities=18%  Similarity=0.186  Sum_probs=213.1

Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchH
Q psy9384         388 QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC  467 (978)
Q Consensus       388 ~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~  467 (978)
                      .++.+++++|+++|++  ..|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.++        
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~ei--------   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKI--------   76 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHH--------
Confidence            5788999999999874  578899999999999999999999999999988764  6899999999999999        


Q ss_pred             HHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCC-ChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384         468 VVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR-TALSVSALCVPSSDGYAKVVSILLEK  546 (978)
Q Consensus       468 vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-t~l~~a~~~~~~~~~~~~~v~~Ll~~  546 (978)
                       +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|. |||++|+     ..++.+++++|++.
T Consensus        77 -V~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa-----~~g~~eivk~LL~~  150 (284)
T PHA02791         77 -VKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSE  150 (284)
T ss_pred             -HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHH-----HcCCHHHHHHHHhc
Confidence             9999999999999999999999999999999999999999999999888874 8999999     68999999999998


Q ss_pred             CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCCcccCCCCC
Q psy9384         547 GAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP-LWAAASMGHASCVALLLFWGAYVDTIDAEGR  624 (978)
Q Consensus       547 g~~~~~~~-~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  624 (978)
                      +.+.  .+ ..|.||||+|+..|+.+++++|+++|++++..+..|.+| ||+|+..|+.+++++|+++|++++.++..+ 
T Consensus       151 ~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-  227 (284)
T PHA02791        151 IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-  227 (284)
T ss_pred             CCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-
Confidence            7543  22 247899999999999999999999999999999989877 999999999999999999999999998854 


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCC
Q psy9384         625 TVLSVAAAQGNIDVVNQLLDRGM  647 (978)
Q Consensus       625 t~L~~A~~~~~~~iv~~Ll~~~~  647 (978)
                      ++|      ++.|++++|+++..
T Consensus       228 ~~l------~~~e~~~~ll~~~~  244 (284)
T PHA02791        228 VLL------DDAEIAKMIIEKHV  244 (284)
T ss_pred             ccC------CCHHHHHHHHHhhh
Confidence            444      89999999999874

>KOG4412|consensus

Probab=100.00  E-value=4.2e-33  Score=242.53  Aligned_cols=206  Identities=35%  Similarity=0.527  Sum_probs=179.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhccCCCccccCC-CCCcHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILL-EAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      .++.+.+|......-++.++++. ...++.++. +|+||||+||.+|+.++|++|+ +.++.+|.+|..||||||.||..
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~-~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSD-PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcC-hhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            35567777777777888888742 234555544 8999999999999999999999 56788999999999999999999


Q ss_pred             CCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384         422 GHSAVVKLLLQS-GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD  500 (978)
Q Consensus       422 g~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~  500 (978)
                      |+.++|+-|+.+ |+|+|..++.|.|+||||+..|+.+|         +++|+++|+.++.+|..|.||||.|+.-|.++
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eI---------aqlLle~ga~i~~kD~~~qtplHRAAavGklk  153 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEI---------AQLLLEKGALIRIKDKQGQTPLHRAAAVGKLK  153 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhH---------HHHHHhcCCCCcccccccCchhHHHHhccchh
Confidence            999999999998 89999999999999999999999999         99999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy9384         501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA  565 (978)
Q Consensus       501 ~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~  565 (978)
                      ++++|+..|+.+|..|..|+||||.|.     -.++.+...+|+++|++++..|..| |++..++
T Consensus       154 vie~Li~~~a~~n~qDk~G~TpL~~al-----~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  154 VIEYLISQGAPLNTQDKYGFTPLHHAL-----AEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             hHHHHHhcCCCCCcccccCccHHHHHH-----hccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            999999999999999999999999885     4668888888888888888888877 7776554

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=304.71  Aligned_cols=282  Identities=21%  Similarity=0.305  Sum_probs=169.7

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc-----CCceeeee
Q psy9384         390 FVDAVQILLEAGANINHTDCEGWTPLRSASW--GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG-----GHLEVTIV  462 (978)
Q Consensus       390 ~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~--~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~-----~~~~i~~~  462 (978)
                      ..+.|+.|++.+ +++.. ..+.|+++.+..  .++.++|++|+++|++++..+..|.||||.|+.+     ++.++   
T Consensus        17 ~~~~v~~ll~~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~i---   91 (489)
T PHA02798         17 KLSTVKLLIKSC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDI---   91 (489)
T ss_pred             cHHHHHHHHhcC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHH---
Confidence            355666666543 22222 234455443222  2356666666666666666666666666665543     22333   


Q ss_pred             ccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHH
Q psy9384         463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI  542 (978)
Q Consensus       463 ~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~  542 (978)
                            +++|+++|+++|..+..|.||||+|+..+.                                   .++.+++++
T Consensus        92 ------v~~Ll~~GadiN~~d~~G~TpLh~a~~~~~-----------------------------------~~~~~iv~~  130 (489)
T PHA02798         92 ------VKILIENGADINKKNSDGETPLYCLLSNGY-----------------------------------INNLEILLF  130 (489)
T ss_pred             ------HHHHHHCCCCCCCCCCCcCcHHHHHHHcCC-----------------------------------cChHHHHHH
Confidence                  555555555555555555555555555431                                   123445555


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHhCCCCccCCC-CCCCcHHHHHHHc----CCHHHHHHHHHCCC
Q psy9384         543 LLEKGAKVDHEDREGMTPLLVAAFEGH---RDVCEILLENEADQDHID-KSGRTPLWAAASM----GHASCVALLLFWGA  614 (978)
Q Consensus       543 Ll~~g~~~~~~~~~~~t~L~~a~~~~~---~~iv~~Ll~~g~~~~~~~-~~~~t~L~~A~~~----~~~~~v~~Ll~~g~  614 (978)
                      |+++|++++..+..|.||||+|+..++   .+++++|+++|++++..+ ..+.||||.++..    ++.+++++|+++|+
T Consensus       131 Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        131 MIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             HHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            555555555555555555555555544   555555555555555442 2345555554432    24555555555555


Q ss_pred             CCcccCCCCCcHHH-------HHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHH
Q psy9384         615 YVDTIDAEGRTVLS-------VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCR  687 (978)
Q Consensus       615 ~~~~~~~~~~t~L~-------~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  687 (978)
                      +++..+..+.++++       .+...++.+++++|+. +              .++|.+|..|+||||+|+..|+.++++
T Consensus       211 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~--------------~dvN~~d~~G~TPL~~A~~~~~~~~v~  275 (489)
T PHA02798        211 IINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-Y--------------IDINQVDELGFNPLYYSVSHNNRKIFE  275 (489)
T ss_pred             CcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-c--------------CCCCCcCcCCccHHHHHHHcCcHHHHH
Confidence            55555555555543       2334456777777665 4              677888888888888888888888888


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCC
Q psy9384         688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK  733 (978)
Q Consensus       688 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~  733 (978)
                      +|+++|++++..|..|.|||++|+.+++.++++.|++. +++++..
T Consensus       276 ~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i  320 (489)
T PHA02798        276 YLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNK-KPNKNTI  320 (489)
T ss_pred             HHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHH
Confidence            88888888888888888888888888888888888886 7776644

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=298.00  Aligned_cols=251  Identities=26%  Similarity=0.343  Sum_probs=158.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384         379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE  458 (978)
Q Consensus       379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  458 (978)
                      +++||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.+|||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            45566666666666666666666666666556666666666666666666666666665555555566666666666666


Q ss_pred             eeeeccchHHHHHHHHcCCCCc-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChH
Q psy9384         459 VTIVLGPLCVVKLLLAAGAHVN-AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA  537 (978)
Q Consensus       459 i~~~~~~~~vv~~Ll~~g~~~~-~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~  537 (978)
                      +         +++|++.|+..+ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+     ..++.
T Consensus        83 ~---------v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~-----~~~~~  148 (413)
T PHA02875         83 A---------VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV-----MMGDI  148 (413)
T ss_pred             H---------HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HcCCH
Confidence            5         666666655443 23345566666666666666666666666666666666666666666     45566


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCC-CcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384         538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSG-RTPLWAAASMGHASCVALLLFWGAYV  616 (978)
Q Consensus       538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~g~~~  616 (978)
                      +++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..| .+|+++|+..++.+++++|+++|+++
T Consensus       149 ~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            66666666666666666667777777777777777777777777776666655 35666677777777777777777776


Q ss_pred             ccc---CCCCCcHHHHHHHc---CCHHHHHHHH
Q psy9384         617 DTI---DAEGRTVLSVAAAQ---GNIDVVNQLL  643 (978)
Q Consensus       617 ~~~---~~~~~t~L~~A~~~---~~~~iv~~Ll  643 (978)
                      +..   +.++.|+++.++..   ...+.++.++
T Consensus       229 n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        229 NIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             chHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            643   45566777765532   2344555454

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.3e-32  Score=305.66  Aligned_cols=289  Identities=20%  Similarity=0.249  Sum_probs=205.6

Q ss_pred             CCHHHHHHHHHhccCCCccccCCCCCcHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-----CCHHH
Q psy9384         354 NNINLLKTFLKSCEALDLELVDKHGQTALNVAAH--QGFVDAVQILLEAGANINHTDCEGWTPLRSASWG-----GHSAV  426 (978)
Q Consensus       354 ~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-----g~~~i  426 (978)
                      -..+.|+.|++  .+...+.  ..+.|+++.+..  .++.++|++|+++|++++..+..|.||||.|+.+     ++.++
T Consensus        16 ~~~~~v~~ll~--~~~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~i   91 (489)
T PHA02798         16 VKLSTVKLLIK--SCNPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDI   91 (489)
T ss_pred             ccHHHHHHHHh--cCChhhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHH
Confidence            35779999997  3332222  346777764444  4589999999999999999999999999999864     67899


Q ss_pred             HHHHHhCCCCCCcCCCCCCcHHHHHHhcC---CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC---HH
Q psy9384         427 VKLLLQSGADVNCSDMGGRTALRAAAWGG---HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH---AD  500 (978)
Q Consensus       427 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~---~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~---~~  500 (978)
                      +++|+++|++++..+..|.||||+|+.++   +.++         +++|+++|++++..+..|.||||+|+..++   .+
T Consensus        92 v~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i---------v~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         92 VKILIENGADINKKNSDGETPLYCLLSNGYINNLEI---------LLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             HHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH---------HHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHH
Confidence            99999999999999999999999999987   4456         999999999999999999999999999988   99


Q ss_pred             HHHHHHHcCCCCccCC-CCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy9384         501 IVSSILEYDADINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN  579 (978)
Q Consensus       501 ~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~  579 (978)
                      ++++|+++|++++..+ ..+.||+|.++.. ....++.+++++|+++|++++..+..+.++++....             
T Consensus       163 vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~-~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~-------------  228 (489)
T PHA02798        163 IIKLLLEKGVDINTHNNKEKYDTLHCYFKY-NIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN-------------  228 (489)
T ss_pred             HHHHHHHhCCCcccccCcCCCcHHHHHHHh-ccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH-------------
Confidence            9999999999998775 4677888876632 123446777777777777777766666665541100             


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384         580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG  659 (978)
Q Consensus       580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~  659 (978)
                                   .+..+...++.+++.+|+. +++++.++..|.||||+|+..++.+++++|+++|             
T Consensus       229 -------------~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-------------  281 (489)
T PHA02798        229 -------------SLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG-------------  281 (489)
T ss_pred             -------------HHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-------------
Confidence                         0011222233444444433 3555555555555555555555555555555555             


Q ss_pred             CCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy9384         660 SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD  697 (978)
Q Consensus       660 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  697 (978)
                       ++++.++..|.|||+.|+..++.++++.|++++++++
T Consensus       282 -Adin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        282 -GDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             -CcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence             4555555555555555555555555555555555554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-31  Score=294.62  Aligned_cols=252  Identities=20%  Similarity=0.265  Sum_probs=229.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384         343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG  422 (978)
Q Consensus       343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g  422 (978)
                      .+++|+.|+..|+.+++++|++  .|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~--~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLD--IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHH--CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence            3578999999999999999999  89999999999999999999999999999999999999988889999999999999


Q ss_pred             CHHHHHHHHhCCCCCC-cCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384         423 HSAVVKLLLQSGADVN-CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI  501 (978)
Q Consensus       423 ~~~iv~~Ll~~g~~~~-~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~  501 (978)
                      +.+++++|++.|++.+ ..+..|.||||+|+..|+.++         +++|+++|++++..+..|.||||+|+..|+.++
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~i---------v~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~  150 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDI---------MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG  150 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHH---------HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            9999999999997654 445679999999999999999         999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHhCC
Q psy9384         502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG-MTPLLVAAFEGHRDVCEILLENE  580 (978)
Q Consensus       502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~a~~~~~~~iv~~Ll~~g  580 (978)
                      +++|+++|++++.++..|.||||+|+     ..++.+++++|++.|++++..+..| .+|+++|+..|+.+++++|+++|
T Consensus       151 v~~Ll~~g~~~~~~d~~g~TpL~~A~-----~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g  225 (413)
T PHA02875        151 IELLIDHKACLDIEDCCGCTPLIIAM-----AKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG  225 (413)
T ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999999999999     7899999999999999999988776 47899999999999999999999


Q ss_pred             CCccCC---CCCCCcHHHHHHHc---CCHHHHHHHH
Q psy9384         581 ADQDHI---DKSGRTPLWAAASM---GHASCVALLL  610 (978)
Q Consensus       581 ~~~~~~---~~~~~t~L~~A~~~---~~~~~v~~Ll  610 (978)
                      ++++..   +..+.||++.+...   ...+.++.++
T Consensus       226 ad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        226 ADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             cCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            999865   55678898876542   3344444444

>KOG4412|consensus

Probab=99.98  E-value=3.2e-31  Score=230.84  Aligned_cols=202  Identities=35%  Similarity=0.479  Sum_probs=117.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCC-CCccCCC-CCCChhhhhhhccCCCCChHHHHHHHH-hCCCCCCCCCCCCCCHHHH
Q psy9384         487 RTALIASAYMGHADIVSSILEYDA-DINQQDN-DGRTALSVSALCVPSSDGYAKVVSILL-EKGAKVDHEDREGMTPLLV  563 (978)
Q Consensus       487 ~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~  563 (978)
                      .++.+.++......-++-+++... +++.++. +++||||+||     +.|+.+++.+|+ ..+..+|.+|..|+||||.
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~-----S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhi   78 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWAC-----SFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHI   78 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeee-----ecCchhHHHHHHhcCCCCCCCccccCCchhhh
Confidence            344555555555555555555443 4444444 5666666666     556666666666 3345555555556666666


Q ss_pred             HHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384         564 AAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL  642 (978)
Q Consensus       564 a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~L  642 (978)
                      |+..|+.++|+.|+.+ |+++|..+..|.|+||+|+..|..+++++|+++|+.++.+|..|+||||.|+..|+++++++|
T Consensus        79 a~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   79 AASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             hhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHH
Confidence            6666666666666555 566665555666666666666666666666666665666666666666666666666666666


Q ss_pred             HHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy9384         643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI  708 (978)
Q Consensus       643 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  708 (978)
                      +..|              ..+|.+|..|+||||.|...|+.++..+|+.+|++++..|+.| ||+-
T Consensus       159 i~~~--------------a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~  209 (226)
T KOG4412|consen  159 ISQG--------------APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALR  209 (226)
T ss_pred             HhcC--------------CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHH
Confidence            6555              4555555666666666555555666666666666655555555 5543

>KOG4369|consensus

Probab=99.97  E-value=1e-30  Score=284.50  Aligned_cols=316  Identities=20%  Similarity=0.206  Sum_probs=283.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC-CCC
Q psy9384         623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ-VDN  701 (978)
Q Consensus       623 ~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~  701 (978)
                      -.|+|-.||..|+.|+++.|+.+|              .++..+|..|.+||.+|+..||..+|+.|+++.++++. .|.
T Consensus       757 ~~t~LT~acaggh~e~vellv~rg--------------aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr  822 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRG--------------ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR  822 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhc--------------ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc
Confidence            357888999999999999999999              78889999999999999999999999999999999885 477


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCccccccccc
Q psy9384         702 DGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKF  781 (978)
Q Consensus       702 ~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  781 (978)
                      .+.|+|.+|+..|+.++|++||.. |++-..++...+|||..|.     ..+..++++.|+    +.|     +.++.+.
T Consensus       823 tkdt~lSlacsggr~~vvelLl~~-gankehrnvsDytPlsla~-----Sggy~~iI~~ll----S~G-----seInSrt  887 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGRTRVVELLLNA-GANKEHRNVSDYTPLSLAR-----SGGYTKIIHALL----SSG-----SEINSRT  887 (2131)
T ss_pred             ccCceEEEecCCCcchHHHHHHHh-hccccccchhhcCchhhhc-----CcchHHHHHHHh----hcc-----ccccccc
Confidence            889999999999999999999998 9999999999999999999     899999999999    999     8777775


Q ss_pred             C--CCCccchHHHhhchHHHHHHHHHhc-------ccccchhhhhhhhhhhcccccccchhhhcccCCCccccccccccc
Q psy9384         782 S--TTNPHISRQEYKKRLHILRKIISIA-------NNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRR  852 (978)
Q Consensus       782 ~--~g~t~l~~a~~~g~~~i~~~l~~~~-------~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~t  852 (978)
                      .  -|.+||..|...|+....+.|++.+       ..+-+|+|.  +|+..|+.+   ++..||.. .+++..+...|.|
T Consensus       888 gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTalt--la~fqgr~e---vv~lLLa~-~anvehRaktglt  961 (2131)
T KOG4369|consen  888 GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALT--LALFQGRPE---VVFLLLAA-QANVEHRAKTGLT  961 (2131)
T ss_pred             ccccCcchhhhhhhccccHHHHHHhcccchhcccccccccccee--eccccCcch---HHHHHHHH-hhhhhhhcccCCc
Confidence            4  4778999999999999999999988       344578999  999999999   99999999 9999999999999


Q ss_pred             ccccccc-----hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcC
Q psy9384         853 QTSSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG  927 (978)
Q Consensus       853 pl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~  927 (978)
                      ||+-++.     +-.+|+..|+++|..-..+   .+.|+|.+++..||...|..|+...|.++.++++|.|+|-.|+..|
T Consensus       962 plme~AsgGyvdvg~~li~~gad~nasPvp~---T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg 1038 (2131)
T KOG4369|consen  962 PLMEMASGGYVDVGNLLIAAGADTNASPVPN---TWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGG 1038 (2131)
T ss_pred             ccchhhcCCccccchhhhhcccccccCCCCC---cCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCC
Confidence            9998777     8899999999998644111   2479999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHcCCCCccccc--chhhhhhhhcChhHHHHHHHhhcCCCCCC
Q psy9384         928 HETVLRLLKQYADDSEYFVH--YYYYYNSAKSGHETVLRLLKQYADDIPVV  976 (978)
Q Consensus       928 ~~~~v~~L~~~g~~~~~~~~--~~~l~~A~~~~~~~~~~~L~~~~~~~~~~  976 (978)
                      +...+.+|++.+++.+....  .++++.|...||++||+|...+.--+|.|
T Consensus      1039 ~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~atqfps~ 1089 (2131)
T KOG4369|consen 1039 ALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPPATQFPSV 1089 (2131)
T ss_pred             ccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCchhcCCcH
Confidence            99999999999999998764  47899999999999999999886655544

>KOG0509|consensus

Probab=99.95  E-value=5.8e-28  Score=254.37  Aligned_cols=209  Identities=35%  Similarity=0.473  Sum_probs=186.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcC
Q psy9384         344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSASWGG  422 (978)
Q Consensus       344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g  422 (978)
                      ..-+..|+..|.++.|+.+++. .+.+++..|..|.|+||+||.+++.+++++|+++|+++|... .-+.||||||+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~-~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVES-EGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhh-cCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            3457899999999999999994 288899999999999999999999999999999999999888 67889999999999


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q psy9384         423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV  502 (978)
Q Consensus       423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v  502 (978)
                      +..+|++|+++|+|++.+|.+|.+|+|.|+..|+.-+         +-||+.+|+++|.+|..|+|||++|++.|+...+
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~---------vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v  194 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTAL---------VAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFV  194 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHH---------HHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHH
Confidence            9999999999999999999999999999999999998         9999999999999999999999999999998889


Q ss_pred             HHHHHcCCCCccCC-CCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q psy9384         503 SSILEYDADINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE  567 (978)
Q Consensus       503 ~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~  567 (978)
                      ..||..|+.+...| ..|.||||+|+     -.|+...+.++++.|++.+..+..|.||+..|...
T Consensus       195 ~~LL~f~a~~~~~d~~~g~TpLHwa~-----~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  195 RRLLKFGASLLLTDDNHGNTPLHWAV-----VGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHhcccccccccccCCchHHHHH-----hcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999999988887 78889998888     56788888877777788888888888888888666

>KOG0509|consensus

Probab=99.95  E-value=1.1e-27  Score=252.26  Aligned_cols=209  Identities=37%  Similarity=0.493  Sum_probs=197.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHhcC
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGG  455 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~  455 (978)
                      ...-+..|++.|.++-|+.|++. |.+++..|..|.|+||+||.+++.+++++|+++|+++|..+ .-+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            35668999999999999999998 99999999999999999999999999999999999999887 66889999999999


Q ss_pred             CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC
Q psy9384         456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG  535 (978)
Q Consensus       456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  535 (978)
                      +..+         +++|+++||+++.+|.+|.+|+|.|+..|+.-+|-||+.+|++++.+|..|+|||++|+     .++
T Consensus       124 ~~~v---------v~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa-----ykg  189 (600)
T KOG0509|consen  124 HISV---------VDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA-----YKG  189 (600)
T ss_pred             cHHH---------HHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH-----Hhc
Confidence            9999         99999999999999999999999999999999999999999999999999999999999     677


Q ss_pred             hHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHc
Q psy9384         536 YAKVVSILLEKGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM  600 (978)
Q Consensus       536 ~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~  600 (978)
                      +...+..|++-|+.++..+ ..|.||||+|+..|+..+++.|++-|++.+..+.+|.||+..|.+.
T Consensus       190 ~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  190 FALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            7777999999999999887 8999999999999999999977777899998999999999999877

>KOG4369|consensus

Probab=99.94  E-value=7.4e-28  Score=262.36  Aligned_cols=322  Identities=30%  Similarity=0.408  Sum_probs=294.7

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc-CCCCCCcHHHHHHhc
Q psy9384         376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC-SDMGGRTALRAAAWG  454 (978)
Q Consensus       376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~~~t~l~~A~~~  454 (978)
                      .+-.|+|..||..|+.|+|++|+.+|+++..+|..|.+||.+|+..||..+|+.|+.+.+++.. .|..+.|+|.+||..
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            3557899999999999999999999999999999999999999999999999999999888875 466788999999999


Q ss_pred             CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCC--CCCChhhhhhhccCC
Q psy9384         455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN--DGRTALSVSALCVPS  532 (978)
Q Consensus       455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~~~t~l~~a~~~~~~  532 (978)
                      |+.++         +++||..|++-..++...+|||..|..-|..++|+.|+.+|++++.+..  -|..||++|.     
T Consensus       835 gr~~v---------velLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlat-----  900 (2131)
T KOG4369|consen  835 GRTRV---------VELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLAT-----  900 (2131)
T ss_pred             CcchH---------HHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhh-----
Confidence            99999         9999999999888888999999999999999999999999999887754  6789999998     


Q ss_pred             CCChHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384         533 SDGYAKVVSILLEKGAKVDHEDR-EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF  611 (978)
Q Consensus       533 ~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  611 (978)
                      -+++.+.++.|++.|.|+|.... ...|+|..|+..|+.+++.+|+...+++..+-+.|-|||+-++..|.+++-..|+.
T Consensus       901 mngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  901 MNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             hccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhh
Confidence            57999999999999999987644 45689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHH
Q psy9384         612 WGAYVDTI--DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL  689 (978)
Q Consensus       612 ~g~~~~~~--~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  689 (978)
                      .|+|.+..  -....|+|-.++..||...+..|++..              ..++.++..|.|+|.+|+..|+...+..|
T Consensus       981 ~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~--------------atv~v~NkkG~T~Lwla~~Gg~lss~~il 1046 (2131)
T KOG4369|consen  981 AGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD--------------ATVRVPNKKGCTVLWLASAGGALSSCPIL 1046 (2131)
T ss_pred             cccccccCCCCCcCCccceeecCCCchhhhHHhhCCc--------------cceecccCCCCcccchhccCCccccchHH
Confidence            99998753  345678899999999999999999876              66778899999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384         690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ  725 (978)
Q Consensus       690 l~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~  725 (978)
                      +++++|++..|+...++++.|.+.|+++||++....
T Consensus      1047 ~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1047 VSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             hhcccChhhhhcccccccHHHHHhchhheeccccCc
Confidence            999999999999999999999999999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.8e-25  Score=233.31  Aligned_cols=227  Identities=17%  Similarity=0.107  Sum_probs=195.9

Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHh--cCCceeeeeccc
Q psy9384         394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN------CSDMGGRTALRAAAW--GGHLEVTIVLGP  465 (978)
Q Consensus       394 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~------~~~~~~~t~l~~A~~--~~~~~i~~~~~~  465 (978)
                      -+|++.+|+++|.+...+     +|+..+..|++++|+++|++++      .++..++|+||+++.  .|+.++      
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei------  133 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI------  133 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHH------
Confidence            478999999999887776     8999999999999999999988      778889999999999  888888      


Q ss_pred             hHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCC------CCCCChhhhhhhccCCCCChHHH
Q psy9384         466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD------NDGRTALSVSALCVPSSDGYAKV  539 (978)
Q Consensus       466 ~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------~~~~t~l~~a~~~~~~~~~~~~~  539 (978)
                         +++|+++||+++..  .+.||+|.|+..++.+++++|+++|++.....      ..+.++++.+.     ..+..++
T Consensus       134 ---V~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~-----~~~~~eI  203 (437)
T PHA02795        134 ---VDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVD-----EPTVLEI  203 (437)
T ss_pred             ---HHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHH-----hcCHHHH
Confidence               99999999999874  45899999999999999999999998543221      23556777776     7889999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC--------HHHHHHHHH
Q psy9384         540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH--------ASCVALLLF  611 (978)
Q Consensus       540 v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~--------~~~v~~Ll~  611 (978)
                      +++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+        .+++++|++
T Consensus       204 ve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~  283 (437)
T PHA02795        204 YKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR  283 (437)
T ss_pred             HHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999884        699999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384         612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG  646 (978)
Q Consensus       612 ~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~  646 (978)
                      +|++++.....   .+..  ...+.++++.++...
T Consensus       284 ~gadI~~~~~~---~~~~--~~~n~~~ik~lI~y~  313 (437)
T PHA02795        284 EPLSIDCIKLA---ILNN--TIENHDVIKLCIKYF  313 (437)
T ss_pred             CCCCCCchhHH---hhhc--ccchHHHHHHHHHHH
Confidence            99988764332   2111  123778999998876

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.8e-25  Score=231.44  Aligned_cols=239  Identities=17%  Similarity=0.129  Sum_probs=191.2

Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------CCCCCCCcHHHHHHH--cCCHHHHHHHH
Q psy9384         539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD------HIDKSGRTPLWAAAS--MGHASCVALLL  610 (978)
Q Consensus       539 ~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~------~~~~~~~t~L~~A~~--~~~~~~v~~Ll  610 (978)
                      ..++++.+|++++.....+     +|+..+..+++++|+++|++++      ..+..++|+||.++.  .|+.+++++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            4578889999888776665     7888899999999999999988      667788999999999  89999999999


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHH
Q psy9384         611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL  690 (978)
Q Consensus       611 ~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  690 (978)
                      ++|++++..  ++.||+|.|+..++.+++++|+++|+....        ..+.+..+..+.+++|.|...++.+++++|+
T Consensus       139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n--------~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI  208 (437)
T PHA02795        139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDEN--------DVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI  208 (437)
T ss_pred             HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccc--------cccchhhhhhccchhHHHHhcCHHHHHHHHH
Confidence            999999874  458999999999999999999999952100        0111122345779999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhccc---chhHHHHHHHHHHHHHHh
Q psy9384         691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVT---KLSFWYLLIQPLLNIILS  767 (978)
Q Consensus       691 ~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~~~~~~Ll~~~~~  767 (978)
                      ++|+++|.+|..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+|+.+..   ...++.+++++|+    +
T Consensus       209 s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL----~  283 (437)
T PHA02795        209 PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILL----R  283 (437)
T ss_pred             hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH----h
Confidence            99999999999999999999999999999999997 99999999999999999994321   1123689999999    8


Q ss_pred             cCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhc
Q psy9384         768 SLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIA  807 (978)
Q Consensus       768 ~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~  807 (978)
                      +|     ++++.....+   +..  ...+.++++.++...
T Consensus       284 ~g-----adI~~~~~~~---~~~--~~~n~~~ik~lI~y~  313 (437)
T PHA02795        284 EP-----LSIDCIKLAI---LNN--TIENHDVIKLCIKYF  313 (437)
T ss_pred             CC-----CCCCchhHHh---hhc--ccchHHHHHHHHHHH
Confidence            88     6666543221   111  112456777766644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.9e-24  Score=212.46  Aligned_cols=172  Identities=18%  Similarity=0.281  Sum_probs=104.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCCCCCC-CCCCcHHHHH
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQG--FVDAVQILLEAGANINHTD-CEGWTPLRSA  418 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A  418 (978)
                      .+.+||++|+..|+++.|+.|++  .   .+..+..|.||||+|+..+  +.+++++|++.|++++.++ ..|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~--~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIK--F---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHH--h---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            34566666666666666666665  1   3445556666666666533  5666666666666666664 3566666665


Q ss_pred             HHc---CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc--CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHH-
Q psy9384         419 SWG---GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG--GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA-  492 (978)
Q Consensus       419 ~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~--~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~-  492 (978)
                      +..   ++.+++++|+++|++++..+..|.||||+|+..  ++.++         +++|++.|++++.++..|.||||. 
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~i---------v~~Li~~gadin~~d~~g~t~Lh~~  165 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINV---------IKLLIDSGVSFLNKDFDNNNILYSY  165 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHH---------HHHHHHcCCCcccccCCCCcHHHHH
Confidence            542   356666666666666666666666666665542  34455         666666666666666666666663 


Q ss_pred             HHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384         493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSA  527 (978)
Q Consensus       493 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  527 (978)
                      |+..++.+++++|+++|++++.++..|.||+++|.
T Consensus       166 a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~  200 (209)
T PHA02859        166 ILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK  200 (209)
T ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            34455666666666666666666666666666665

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.7e-24  Score=211.68  Aligned_cols=178  Identities=17%  Similarity=0.213  Sum_probs=144.2

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcCC-CCCCcHHHHH
Q psy9384         375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG--HSAVVKLLLQSGADVNCSD-MGGRTALRAA  451 (978)
Q Consensus       375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A  451 (978)
                      .+.+.||||+|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++..+ ..|.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            34668999999999999999999975   4667888999999998854  8999999999999999886 4789999988


Q ss_pred             Hhc---CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCccCCCCCCChhhhh
Q psy9384         452 AWG---GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY--MGHADIVSSILEYDADINQQDNDGRTALSVS  526 (978)
Q Consensus       452 ~~~---~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  526 (978)
                      +..   ++.++         +++|+++|++++.++..|.||||.|+.  .++.+++++|+++|++++.++..|.||||.+
T Consensus        95 ~~~~~~~~~ei---------v~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~  165 (209)
T PHA02859         95 LSFNKNVEPEI---------LKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSY  165 (209)
T ss_pred             HHhCccccHHH---------HHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Confidence            754   35666         999999999999999999999998876  3578888888888888888888888888754


Q ss_pred             hhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy9384         527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG  568 (978)
Q Consensus       527 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~  568 (978)
                      +.    ..++.+++++|++.|++++.++..|.|||++|+.++
T Consensus       166 a~----~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        166 IL----FHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HH----hcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            32    356677788888888887777777788887776553

>KOG0502|consensus

Probab=99.90  E-value=2.1e-24  Score=194.43  Aligned_cols=261  Identities=30%  Similarity=0.323  Sum_probs=175.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCH
Q psy9384         346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      .++.+...+-.+.-..+...+.    ..+...|.+.+-.|.+.|+.+++..++.-..+ +...+..|+.+++.|+-.++.
T Consensus        34 ~~~~~~~m~~t~p~~~l~~~~s----~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~  109 (296)
T KOG0502|consen   34 ELFEQVEMGTTEPRCALTAEIS----ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSV  109 (296)
T ss_pred             HHHHHhhccccchhHHHHHHHH----HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCc
Confidence            4555555555544444444211    12334455556667777777766666554333 344455677777777777777


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS  504 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  504 (978)
                      +.+..++.+|+..|..+..+.+|+.+++...+.+.         +..+.+  ..+|..|+.|.|||++|+..|++++|++
T Consensus       110 ~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~---------~~~~~~--n~VN~~De~GfTpLiWAaa~G~i~vV~f  178 (296)
T KOG0502|consen  110 DKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDV---------VDLLVN--NKVNACDEFGFTPLIWAAAKGHIPVVQF  178 (296)
T ss_pred             ceeeeeecccccCCccccccCChhhHHHHHHHHHH---------HHHHhh--ccccCccccCchHhHHHHhcCchHHHHH
Confidence            77777777777777767777777777776666554         444443  3456677777777777777777777777


Q ss_pred             HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384         505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD  584 (978)
Q Consensus       505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~  584 (978)
                      ||+.|++++.......++|.+|+     +.|+.++|++|+.++.++|..|..|.|||.+|++.++.++++.|+..|++++
T Consensus       179 LL~~GAdp~~lgk~resALsLAt-----~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  179 LLNSGADPDALGKYRESALSLAT-----RGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT  253 (296)
T ss_pred             HHHcCCChhhhhhhhhhhHhHHh-----cCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence            77777777777777777777777     6777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q psy9384         585 HIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL  627 (978)
Q Consensus       585 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L  627 (978)
                      ..+..|++++..|+..|.. +++..+++.+....++..-++|+
T Consensus       254 ~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  254 QEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             cccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCC
Confidence            7777777777777777766 66666666555555555555544

>KOG0502|consensus

Probab=99.90  E-value=4.3e-24  Score=192.40  Aligned_cols=236  Identities=32%  Similarity=0.345  Sum_probs=208.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384         341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW  420 (978)
Q Consensus       341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  420 (978)
                      ..|...+-.+...++-+++.....-+.... ...+..|+++++.|+-.|+.+.+..++.+|...|..+-.+++|+.+++.
T Consensus        60 ~lge~~~~~~~~s~nsd~~v~s~~~~~~~~-~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   60 ALGESLLTVAVRSGNSDVAVQSAQLDPDAI-DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             hcCCcccchhhhcCCcHHHHHhhccCCCCC-CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHH
Confidence            445555667778888888888877434443 3456679999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384         421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD  500 (978)
Q Consensus       421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~  500 (978)
                      ..+++.+..+.++  .+|..|+.|.|||.||+..|+.++         |++|++.|++++...++..++|..|++.|..+
T Consensus       139 ql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~v---------V~fLL~~GAdp~~lgk~resALsLAt~ggytd  207 (296)
T KOG0502|consen  139 QLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPV---------VQFLLNSGADPDALGKYRESALSLATRGGYTD  207 (296)
T ss_pred             HHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHH---------HHHHHHcCCChhhhhhhhhhhHhHHhcCChHH
Confidence            9999999888876  578889999999999999999999         99999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy9384         501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE  580 (978)
Q Consensus       501 ~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g  580 (978)
                      +|++||+.+.++|..|.+|.|||.+|+     +.++.++++.|+..|++++..+..|++++..|+..|+- +|+..+++.
T Consensus       208 iV~lLL~r~vdVNvyDwNGgTpLlyAv-----rgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h  281 (296)
T KOG0502|consen  208 IVELLLTREVDVNVYDWNGGTPLLYAV-----RGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKH  281 (296)
T ss_pred             HHHHHHhcCCCcceeccCCCceeeeee-----cCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence            999999999999999999999999999     89999999999999999999999999999999999987 888888776


Q ss_pred             CCccCCCCCCCcHH
Q psy9384         581 ADQDHIDKSGRTPL  594 (978)
Q Consensus       581 ~~~~~~~~~~~t~L  594 (978)
                      +..+..+....+|+
T Consensus       282 ~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  282 ALKLCQDSEKRTPL  295 (296)
T ss_pred             HHHHhhcccCCCCC
Confidence            66655555555554

>KOG0507|consensus

Probab=99.89  E-value=6.3e-23  Score=218.56  Aligned_cols=249  Identities=29%  Similarity=0.358  Sum_probs=208.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccC-----------CCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEA-----------LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWT  413 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~-----------~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t  413 (978)
                      +-+-.|+..|+.+.+..+++...+           ...+..|.+|.|+||+||.+|+.+++++|++..+-++..+..|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            347789999999999999985322           236778889999999999999999999999999998889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384         414 PLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS  493 (978)
Q Consensus       414 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A  493 (978)
                      |||+|++.|+.+++++++.++..+|.....|.+|||.|+..|+.++         +.+|+.+|++.-.++..+.|++..|
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dv---------v~~Ll~~~adp~i~nns~~t~ldlA  155 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEV---------VFYLLKKNADPFIRNNSKETVLDLA  155 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHH---------HHHHHhcCCCccccCcccccHHHHH
Confidence            9999999999999999999998899999999999999999999999         9999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy9384         494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC  573 (978)
Q Consensus       494 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv  573 (978)
                      ++.|..++|+.|++.......                            +...|  -..++..+.+|+|.|+++|+.+++
T Consensus       156 ~qfgr~~Vvq~ll~~~~~~~~----------------------------~~~~~--~~~~~~~~~~plHlaakngh~~~~  205 (854)
T KOG0507|consen  156 SRFGRAEVVQMLLQKKFPVQS----------------------------SLRVG--DIKRPFPAIYPLHLAAKNGHVECM  205 (854)
T ss_pred             HHhhhhHHHHHHhhhccchhh----------------------------cccCC--CCCCCCCCcCCcchhhhcchHHHH
Confidence            999999999999987221100                            11222  122445566788888888888888


Q ss_pred             HHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHc
Q psy9384         574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ  633 (978)
Q Consensus       574 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  633 (978)
                      +.|++.|.++|.....| |+||.|+..|..+++.+|++.|.+....+.+|+|.|.+-...
T Consensus       206 ~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  206 QALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             HHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence            88888888888665554 788888888888888888888888888888888887765543

>KOG0507|consensus

Probab=99.88  E-value=1.9e-22  Score=214.93  Aligned_cols=263  Identities=21%  Similarity=0.177  Sum_probs=213.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc
Q psy9384         626 VLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA  705 (978)
Q Consensus       626 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t  705 (978)
                      -+.-|++.|+.+.+..|++.... ..-...........|..|.+|.|+||.|+.+|+.+++++|+++.+-++.+|..|.+
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~-r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKG-RSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCC-CCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            35678888888888888876421 11111112233667888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCC
Q psy9384         706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN  785 (978)
Q Consensus       706 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~  785 (978)
                      |||+|+.+|+.++++.|+.+ +..+|..+..|.||||.|+     ..++.+++.+|+    .+|     ++....++.+.
T Consensus        85 plhlaaw~g~~e~vkmll~q-~d~~na~~~e~~tplhlaa-----qhgh~dvv~~Ll----~~~-----adp~i~nns~~  149 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQ-TDILNAVNIENETPLHLAA-----QHGHLEVVFYLL----KKN-----ADPFIRNNSKE  149 (854)
T ss_pred             eEEehhhcCcchHHHHHHhc-ccCCCcccccCcCccchhh-----hhcchHHHHHHH----hcC-----CCccccCcccc
Confidence            99999999999999999998 8999999999999999999     999999999999    999     99999999999


Q ss_pred             ccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc-----h
Q psy9384         786 PHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA-----V  860 (978)
Q Consensus       786 t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~-----~  860 (978)
                      |++..|++.|..++++.|+...     -                 ++.++... |  -..++..+.+|+|.|+.     +
T Consensus       150 t~ldlA~qfgr~~Vvq~ll~~~-----~-----------------~~~~~~~~-~--~~~~~~~~~~plHlaakngh~~~  204 (854)
T KOG0507|consen  150 TVLDLASRFGRAEVVQMLLQKK-----F-----------------PVQSSLRV-G--DIKRPFPAIYPLHLAAKNGHVEC  204 (854)
T ss_pred             cHHHHHHHhhhhHHHHHHhhhc-----c-----------------chhhcccC-C--CCCCCCCCcCCcchhhhcchHHH
Confidence            9999999999999999998752     0                 11112222 2  33345556666666666     6


Q ss_pred             hhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcC---hHHHHHHH
Q psy9384         861 PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG---HETVLRLL  935 (978)
Q Consensus       861 v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---~~~~v~~L  935 (978)
                      ++.|++.|.++|... ..|     |+||.|+.+|..++|++|++.|.+..+++.+|+|+|++-...-   ..+++-++
T Consensus       205 ~~~ll~ag~din~~t-~~g-----talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~  276 (854)
T KOG0507|consen  205 MQALLEAGFDINYTT-EDG-----TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAV  276 (854)
T ss_pred             HHHHHhcCCCccccc-ccc-----hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhh
Confidence            777777777777666 554     9999999999999999999999999999999999999877663   34454444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=1.5e-20  Score=225.62  Aligned_cols=196  Identities=22%  Similarity=0.305  Sum_probs=166.1

Q ss_pred             cCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384         353 ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ  432 (978)
Q Consensus       353 ~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  432 (978)
                      ..+.++-..+.+  .+..  ..+..+.++|+.||..|+.++++.|++.|+++|..|..|.||||+|+..|+.+++++|++
T Consensus       504 l~~l~v~~ll~~--~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~  579 (823)
T PLN03192        504 LHDLNVGDLLGD--NGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK  579 (823)
T ss_pred             hccccHHHHHhh--cccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh
Confidence            344554454544  2222  234456788999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy9384         433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADI  512 (978)
Q Consensus       433 ~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~  512 (978)
                      +|++++.+|..|.||||+|+..|+.++         +++|++.++..+.  ..+.++|+.|+..|+.+++++|+++|+++
T Consensus       580 ~gadin~~d~~G~TpL~~A~~~g~~~i---------v~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        580 HACNVHIRDANGNTALWNAISAKHHKI---------FRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhCCHHH---------HHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            999999999999999999999999998         9999988766543  34668999999999999999999999999


Q ss_pred             ccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcC
Q psy9384         513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG-MTPLLVAAFEG  568 (978)
Q Consensus       513 ~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~a~~~~  568 (978)
                      +.++..|.||||.|+     ..++.+++++|+++|++++..+..+ .+|+..+....
T Consensus       649 n~~d~~G~TpLh~A~-----~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        649 DSEDHQGATALQVAM-----AEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCCCCCCCHHHHHH-----HCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999998     7889999999999999999988877 88888776543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=6.1e-20  Score=220.44  Aligned_cols=190  Identities=28%  Similarity=0.353  Sum_probs=169.3

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384         537 AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV  616 (978)
Q Consensus       537 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~  616 (978)
                      .++-.++.+.+..  ..+....++|+.|+..|+.++++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++
T Consensus       507 l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi  584 (823)
T PLN03192        507 LNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV  584 (823)
T ss_pred             ccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            3444555555443  23344668999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy9384         617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV  696 (978)
Q Consensus       617 ~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  696 (978)
                      +.++.+|.||||.|+..|+.+++++|++.+.              ..+  ...+.++||.|+..|+.+++++|+++|+++
T Consensus       585 n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~--------------~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        585 HIRDANGNTALWNAISAKHHKIFRILYHFAS--------------ISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCc--------------ccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            9999999999999999999999999998763              222  234679999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCC-CcHHHHHH
Q psy9384         697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDG-RTALRVNM  745 (978)
Q Consensus       697 ~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g-~t~L~~a~  745 (978)
                      |..|..|.||||+|+..|+.+++++|+++ |++++..+..| .||++.+.
T Consensus       649 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        649 DSEDHQGATALQVAMAEDHVDMVRLLIMN-GADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             CCCCCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999997 99999999988 89988776

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=1.3e-20  Score=225.44  Aligned_cols=244  Identities=25%  Similarity=0.237  Sum_probs=189.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHH-HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALN-VAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW  420 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  420 (978)
                      .+...++.|+..|+.+.++.+++...+.+++..|..|.|||| .|+..++.+++++|++.|+    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            456789999999999999999994348899999999999999 8889999999999999987    57789999999987


Q ss_pred             cC---CHHHHHHHHhCCCC------CC----cCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccC----
Q psy9384         421 GG---HSAVVKLLLQSGAD------VN----CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD----  483 (978)
Q Consensus       421 ~g---~~~iv~~Ll~~g~~------~~----~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~----  483 (978)
                      .+   ...++.++...+.+      ++    .....|.||||+|+..|+.++         +++|+++|++++.++    
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~ei---------VklLL~~GAdv~~~~~~~~  162 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEI---------VKLLLERGASVPARACGDF  162 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHH---------HHHHHhCCCCCCcCcCCch
Confidence            32   22344444444422      11    123468999999999999999         999999999998653    


Q ss_pred             ----------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC----hHHHHHHHHhCCCC
Q psy9384         484 ----------SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG----YAKVVSILLEKGAK  549 (978)
Q Consensus       484 ----------~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~----~~~~v~~Ll~~g~~  549 (978)
                                ..|.+||+.|+..|+.+++++|+++|++++..+..|+||||+|+........    ...+.+++++.+..
T Consensus       163 ~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       163 FVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             hhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence                      2588999999999999999999999999999999999999999842110001    22345556555544


Q ss_pred             C-------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHH
Q psy9384         550 V-------DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA  598 (978)
Q Consensus       550 ~-------~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~  598 (978)
                      .       +..|..|.|||+.|+..|+.+++++|++.+............+.+.+.
T Consensus       243 ~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       243 LRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSL  298 (743)
T ss_pred             cCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhh
Confidence            3       556889999999999999999999999865443333334445555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=1.5e-20  Score=225.12  Aligned_cols=235  Identities=26%  Similarity=0.203  Sum_probs=171.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHh
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEA--GANINHTDCEGWTPLR-SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW  453 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~-~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~  453 (978)
                      .+...++.||..|+.+.++.+++.  +.++|..|..|.|||| .|+.+++.+++++|+++|+    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            457899999999999999999999  8999999999999999 8999999999999999987    56789999999997


Q ss_pred             cCCceeeeeccchHHHHHHHHcCCC------Cc----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChh
Q psy9384         454 GGHLEVTIVLGPLCVVKLLLAAGAH------VN----AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL  523 (978)
Q Consensus       454 ~~~~~i~~~~~~~~vv~~Ll~~g~~------~~----~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  523 (978)
                      ++...+      ..++.++...+.+      .+    .....|.||||.|+..|+.++|++|+++|++++.++....   
T Consensus        92 ~~~~~v------~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~---  162 (743)
T TIGR00870        92 EYVDAV------EAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF---  162 (743)
T ss_pred             ccHHHH------HHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch---
Confidence            432211      1115555554422      11    1234689999999999999999999999999985432110   


Q ss_pred             hhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcC--
Q psy9384         524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG--  601 (978)
Q Consensus       524 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~--  601 (978)
                         +               .  .+... .....|.+||+.|+..|+.+++++|+++|++++..+..|+||||.|+..+  
T Consensus       163 ---~---------------~--~~~~~-~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~  221 (743)
T TIGR00870       163 ---F---------------V--KSQGV-DSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEF  221 (743)
T ss_pred             ---h---------------h--cCCCC-CcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhh
Confidence               0               0  00000 11235677888888888888888888888888878888888888887765  


Q ss_pred             -------CHHHHHHHHHCCCCC-------cccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9384         602 -------HASCVALLLFWGAYV-------DTIDAEGRTVLSVAAAQGNIDVVNQLLDR  645 (978)
Q Consensus       602 -------~~~~v~~Ll~~g~~~-------~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~  645 (978)
                             ...+.+++++.+...       +..+.+|.|||+.|+..|+.+++++|++.
T Consensus       222 ~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       222 KAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence                   223445555444332       45577788888888888888888888774

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514|consensus

Probab=99.83  E-value=1.2e-20  Score=183.86  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc----------hhhhhh
Q psy9384         796 RLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA----------VPSATD  865 (978)
Q Consensus       796 ~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~----------~v~~L~  865 (978)
                      ...+++|.++..|.+|.|+||  +++..+|++   +|+.||+..-++++.+|+.|+||+++++-          +|..|.
T Consensus       253 s~~lL~yvVNlaDsNGNTALH--YsVSHaNF~---VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF  327 (452)
T KOG0514|consen  253 SPPLLEYVVNLADSNGNTALH--YAVSHANFD---VVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF  327 (452)
T ss_pred             ChHHHHHHhhhhcCCCCeeee--eeecccchH---HHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH
Confidence            367889999999999999999  999999999   99999999557899999999999998876          777777


Q ss_pred             hccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcC-C--CC
Q psy9384         866 EHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYA-D--DS  942 (978)
Q Consensus       866 ~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g-~--~~  942 (978)
                      ..| ++|.+--.-|    +|+|++|+..|+.++||.||.-|||+|++|.+|.|||+.|+.+||.||+++|+..- +  ..
T Consensus       328 ~mg-nVNaKAsQ~g----QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL  402 (452)
T KOG0514|consen  328 KMG-DVNAKASQHG----QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL  402 (452)
T ss_pred             hcc-Ccchhhhhhc----chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccccee
Confidence            765 5666665778    99999999999999999999999999999999999999999999999999998753 3  33


Q ss_pred             cccccchhhhhhhhcChhHHHHHHHhh
Q psy9384         943 EYFVHYYYYYNSAKSGHETVLRLLKQY  969 (978)
Q Consensus       943 ~~~~~~~~l~~A~~~~~~~~~~~L~~~  969 (978)
                      .+..|.|+|++|.+.||.||--+|..+
T Consensus       403 tD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  403 TDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             ecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            446799999999999999999888765

>KOG0514|consensus

Probab=99.83  E-value=9.8e-21  Score=184.34  Aligned_cols=168  Identities=20%  Similarity=0.238  Sum_probs=148.1

Q ss_pred             CCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCccc
Q psy9384         696 VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVE  775 (978)
Q Consensus       696 ~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~  775 (978)
                      +|..|.+|+|+|||++.++++++|+.||+..-++++..+..|+||++.++....+...+.++|..|+    ..|      
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF----~mg------  330 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF----KMG------  330 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH----hcc------
Confidence            5678899999999999999999999999997789999999999999999877666788889999998    666      


Q ss_pred             ccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccc
Q psy9384         776 DLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTS  855 (978)
Q Consensus       776 ~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~  855 (978)
                      ++|++-                          .+.|+|+|+  +|+..|+.+   +|+.||.. |+|+|++|.+|     
T Consensus       331 nVNaKA--------------------------sQ~gQTALM--LAVSHGr~d---~vk~LLac-gAdVNiQDdDG-----  373 (452)
T KOG0514|consen  331 DVNAKA--------------------------SQHGQTALM--LAVSHGRVD---MVKALLAC-GADVNIQDDDG-----  373 (452)
T ss_pred             Ccchhh--------------------------hhhcchhhh--hhhhcCcHH---HHHHHHHc-cCCCccccCCc-----
Confidence            555542                          257889999  999999999   99999998 88888887766     


Q ss_pred             cccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHc-CCCCCCCcccCccHHHHHHHcChHHHHHH
Q psy9384         856 SSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHY-GADPKHSDHCGRNAFRVAAKSGHETVLRL  934 (978)
Q Consensus       856 ~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~~~v~~  934 (978)
                                                  .|+|++||+.||.|||++||.. +.|....|.+|.|||.+|...||.||.-+
T Consensus       374 ----------------------------STALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~m  425 (452)
T KOG0514|consen  374 ----------------------------STALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVM  425 (452)
T ss_pred             ----------------------------cHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHH
Confidence                                        8899999999999999999984 58888999999999999999999999999


Q ss_pred             HHHc
Q psy9384         935 LKQY  938 (978)
Q Consensus       935 L~~~  938 (978)
                      |..+
T Consensus       426 lYa~  429 (452)
T KOG0514|consen  426 LYAH  429 (452)
T ss_pred             HHHH
Confidence            9664

>KOG0505|consensus

Probab=99.83  E-value=7.7e-20  Score=188.84  Aligned_cols=227  Identities=22%  Similarity=0.209  Sum_probs=189.5

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhH
Q psy9384         674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSF  753 (978)
Q Consensus       674 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  753 (978)
                      +.-|+..+..+-+..|+..|++++..+.+|.|++|-++.-.+.+||++|+++ |++++..|..|+||||.|+     .-+
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaa-----scg  117 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAA-----SCG  117 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhc-----ccc
Confidence            5567888999999999999999999999999999999999999999999997 9999999999999999999     999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchh
Q psy9384         754 WYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRY  833 (978)
Q Consensus       754 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~  833 (978)
                      +..++++|+    .+|     +++.+.+.+|..|...+......+++..-+...                          
T Consensus       118 ~~~i~~~li----~~g-----A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~--------------------------  162 (527)
T KOG0505|consen  118 YLNIVEYLI----QHG-----ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQ--------------------------  162 (527)
T ss_pred             cHHHHHHHH----Hhh-----hhhhhccCCCCCccccccCcchhHHHHHHHHHh--------------------------
Confidence            999999999    999     999999999999988877666666555544322                          


Q ss_pred             hhcccCCCcccc-cccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCC
Q psy9384         834 LCSLNDGHLIHA-VDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHS  912 (978)
Q Consensus       834 ~Ll~~~g~~~~~-~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~  912 (978)
                            |+++++ .....++-|.    -+...+..|...+... ..|    .|+||+|+..|..++.++|+++|.+++.+
T Consensus       163 ------gi~iea~R~~~e~~ml~----D~~q~l~~G~~~d~~~-~rG----~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~  227 (527)
T KOG0505|consen  163 ------GIDIEAARKAEEQTMLD----DARQWLNAGAELDARH-ARG----ATALHVAAANGYTEVAALLLQAGYSVNIK  227 (527)
T ss_pred             ------cccHHHHhhhhHHHHHH----HHHHHHhccccccccc-ccc----chHHHHHHhhhHHHHHHHHHHhccCcccc
Confidence                  111111 0000111111    1233444777777777 558    99999999999999999999999999999


Q ss_pred             cccCccHHHHHHHcChHHHHHHHHHcCCCCcc--cccchhhhhhhh
Q psy9384         913 DHCGRNAFRVAAKSGHETVLRLLKQYADDSEY--FVHYYYYYNSAK  956 (978)
Q Consensus       913 d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~--~~~~~~l~~A~~  956 (978)
                      |..|+||||.|+.-|+.+++++|+++|+++++  ..|.+|+.+|.+
T Consensus       228 D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  228 DYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            99999999999999999999999999999988  458899988764

>KOG0505|consensus

Probab=99.81  E-value=6.4e-20  Score=189.42  Aligned_cols=230  Identities=30%  Similarity=0.427  Sum_probs=150.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384         346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA  425 (978)
Q Consensus       346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~  425 (978)
                      .+..|+..|+++-+..|+.  .+..++..+.+|.|+||-+|...+.+||++|+++|+++|..|..+|||||.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~--~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLN--RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhc--cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            4667788888888888888  66777888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         426 VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSS  504 (978)
Q Consensus       426 iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  504 (978)
                      ++.+|+.+|+++...+..|..|...+.-....++         +..-.. .|.++           ..+-...       
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~---------l~~~~~r~gi~i-----------ea~R~~~-------  173 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDV---------LETEMARQGIDI-----------EAARKAE-------  173 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHH---------HHHHHHHhcccH-----------HHHhhhh-------
Confidence            8888888888887777777777766654433332         221111 11111           1100000       


Q ss_pred             HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384         505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD  584 (978)
Q Consensus       505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~  584 (978)
                                                  ......-+...+..|...+.....|.|.||.|+.+|+.++.++|++.|.+++
T Consensus       174 ----------------------------e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~  225 (527)
T KOG0505|consen  174 ----------------------------EQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVN  225 (527)
T ss_pred             ----------------------------HHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcc
Confidence                                        0011112223333555555555556666666666666666666666666666


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH
Q psy9384         585 HIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA  632 (978)
Q Consensus       585 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  632 (978)
                      ..|..|++|||.|+..|..++.++|+++|++.+.....|.+|+..|..
T Consensus       226 ~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  226 IKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            666666666666666666666666666666666666666666655543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=3.5e-19  Score=169.21  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=117.8

Q ss_pred             cCCCccccCCCCCcHHHHHHHhCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHhCCCCCCc
Q psy9384         367 EALDLELVDKHGQTALNVAAHQGFV----DAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV---VKLLLQSGADVNC  439 (978)
Q Consensus       367 ~~~~~~~~~~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~i---v~~Ll~~g~~~~~  439 (978)
                      .+++++..+..+.++||+||+.|+.    +++++|++.|+.++.+|..|+||||+|+..|+.+.   +++|++.|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            3456666777788888888888887    56667778888888888888888888888887654   7888888888888


Q ss_pred             CC-CCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCC
Q psy9384         440 SD-MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN  517 (978)
Q Consensus       440 ~~-~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  517 (978)
                      ++ ..|.||||+|+..++.++         +++|+. .|++++..+..|.||||+|+..++.+++++|+++|++++.++.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~i---------v~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYEL---------AEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHH---------HHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            87 478888888888888888         888884 7888888888888888888888888888888888888887776


Q ss_pred             CCC
Q psy9384         518 DGR  520 (978)
Q Consensus       518 ~~~  520 (978)
                      .|.
T Consensus       160 ~~~  162 (166)
T PHA02743        160 IGL  162 (166)
T ss_pred             CCc
Confidence            553

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=2.8e-18  Score=163.04  Aligned_cols=145  Identities=18%  Similarity=0.221  Sum_probs=99.2

Q ss_pred             CCCCccCCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHH---HHHHHHHCCCcccc
Q psy9384         579 NEADQDHIDKSGRTPLWAAASMGHA----SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID---VVNQLLDRGMILGC  651 (978)
Q Consensus       579 ~g~~~~~~~~~~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~---iv~~Ll~~~~~~~~  651 (978)
                      ++++++..+..+.++++.|++.|+.    +++++|++.|+.++..+..|+||||+|+..|+.+   ++++|+++|     
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-----   83 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-----   83 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-----
Confidence            3455555556666677777777766    4555566666666666777777777777766544   367777777     


Q ss_pred             ccCCCCCCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCC
Q psy9384         652 LAGGRQTGSLDEQHRD-NCGWTPLHYAAIEGHEEVCRALLE-AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN  729 (978)
Q Consensus       652 ~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~  729 (978)
                               .+++.++ ..|.||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++|+++ |++
T Consensus        84 ---------adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~  153 (166)
T PHA02743         84 ---------ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN-GAV  153 (166)
T ss_pred             ---------CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence                     5666666 467777777777777777777774 6777777777777777777777777777777775 777


Q ss_pred             CcCCCCCCC
Q psy9384         730 VNQKSHDGR  738 (978)
Q Consensus       730 ~~~~~~~g~  738 (978)
                      ++.++..|.
T Consensus       154 ~~~~~~~~~  162 (166)
T PHA02743        154 CDDPLSIGL  162 (166)
T ss_pred             CCCcccCCc
Confidence            777666553

>KOG0512|consensus

Probab=99.77  E-value=4.2e-18  Score=148.00  Aligned_cols=146  Identities=32%  Similarity=0.318  Sum_probs=129.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy9384         344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH  423 (978)
Q Consensus       344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~  423 (978)
                      ...+.+|+..+.+..|+.|++. ....+|.+|.+++||||.|+++|+.+||+.|+..|++++.+...||||||-||.-++
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            3468899999999999999995 455689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCC
Q psy9384         424 SAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGH  498 (978)
Q Consensus       424 ~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~  498 (978)
                      .+++.+|+++|+|+++......||||.|+...+....        +.+|+. .+..+...+..+.||+.+|-+.+-
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t--------~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDT--------LELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHH--------HHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            9999999999999999999999999999988766542        566554 567777778889999999988753

>PHA02741 hypothetical protein; Provisional

Probab=99.76  E-value=5.5e-18  Score=162.07  Aligned_cols=131  Identities=21%  Similarity=0.281  Sum_probs=112.4

Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcCC
Q psy9384         372 ELVDKHGQTALNVAAHQGFVDAVQILLE------AGANINHTDCEGWTPLRSASWGGH----SAVVKLLLQSGADVNCSD  441 (978)
Q Consensus       372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~  441 (978)
                      +..+..|.||||+|++.|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            3467788999999999999999998754      357788888899999999999888    588899999999998887


Q ss_pred             C-CCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         442 M-GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       442 ~-~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      . .|.||||+|+..++.++         +++|+. .|++++..+..|.|||+.|+..++.+++++|++.++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~i---------v~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDL---------AEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHH---------HHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4 88999999999999888         999987 5889888888999999999999999999999987654

>PHA02741 hypothetical protein; Provisional

Probab=99.75  E-value=1.4e-17  Score=159.26  Aligned_cols=133  Identities=21%  Similarity=0.326  Sum_probs=120.6

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHh----ccCCCccccCCCCCcHHHHHHHhCC----HHHHHHHHHCCCCCCCCC
Q psy9384         337 TMFDSKNQSVLHKLCAENNINLLKTFLKS----CEALDLELVDKHGQTALNVAAHQGF----VDAVQILLEAGANINHTD  408 (978)
Q Consensus       337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~----~~~~~~~~~~~~~~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~  408 (978)
                      +..+..|.|+||+|+..|+.++++.|+..    +.+.+++.+|..|.||||+|+..|+    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            44677899999999999999999998652    2357889999999999999999999    589999999999999998


Q ss_pred             C-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC
Q psy9384         409 C-EGWTPLRSASWGGHSAVVKLLLQ-SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH  478 (978)
Q Consensus       409 ~-~~~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~  478 (978)
                      . .|.||||+|+..++.+++++|+. .|++++..+..|.|||++|+..++.++         +++|++.++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~i---------v~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAM---------MQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHH---------HHHHHHHHHH
Confidence            5 89999999999999999999998 599999999999999999999999999         9999987654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=3.3e-17  Score=167.07  Aligned_cols=154  Identities=20%  Similarity=0.181  Sum_probs=121.2

Q ss_pred             ccCCCCCc-HHHHHHHhCCHHHHHHHHHCCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcC-CCCCCc
Q psy9384         373 LVDKHGQT-ALNVAAHQGFVDAVQILLEAGANINHTD----CEGWTPLRSASWGGHSAVVKLLLQSGADVNCS-DMGGRT  446 (978)
Q Consensus       373 ~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~~~t  446 (978)
                      .+|..+.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..|+.+++++|+++|++++.. +..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            45566655 5677777789999999999999998863    57899999999999999999999999999975 457889


Q ss_pred             HHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhh
Q psy9384         447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS  526 (978)
Q Consensus       447 ~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  526 (978)
                      |||.|+..++.++         +++|+.+|++++..+..|.|||+.|+..++.+++..+...  .   .+..+.+|..+.
T Consensus       107 pLh~Aa~~~~~ei---------vklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~  172 (300)
T PHA02884        107 PLYISVLHGCLKC---------LEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E---ISNFYKHPKKIL  172 (300)
T ss_pred             HHHHHHHcCCHHH---------HHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c---ccccccChhhhh
Confidence            9999999999888         9999999999999999999999999998888877665432  2   233445565543


Q ss_pred             hhccCCCCChHHHHHHHHhCCC
Q psy9384         527 ALCVPSSDGYAKVVSILLEKGA  548 (978)
Q Consensus       527 ~~~~~~~~~~~~~v~~Ll~~g~  548 (978)
                              +..+++++|+.++.
T Consensus       173 --------~n~ei~~~Lish~v  186 (300)
T PHA02884        173 --------INFDILKILVSHFI  186 (300)
T ss_pred             --------ccHHHHHHHHHHHH
Confidence                    24677777777654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=4.6e-17  Score=166.04  Aligned_cols=153  Identities=18%  Similarity=0.120  Sum_probs=130.8

Q ss_pred             ccCCCc-hHHHHHHHcCCHHHHHHHHHhccCCCcccc----CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCC
Q psy9384         339 FDSKNQ-SVLHKLCAENNINLLKTFLKSCEALDLELV----DKHGQTALNVAAHQGFVDAVQILLEAGANINHT-DCEGW  412 (978)
Q Consensus       339 ~~~~~~-~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~  412 (978)
                      .|..+. ++|+.|+..|+.+++++|++  .|++++..    +..|.||||+|+..|+.+++++|+++|++++.+ +..|.
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~--~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILK--LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHH--CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            344443 56778888899999999999  89999987    458999999999999999999999999999986 46799


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHH
Q psy9384         413 TPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA  492 (978)
Q Consensus       413 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~  492 (978)
                      ||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.++         +..+.  |..   .+..+.+|...
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~---------~~~~~--~~~---~~~~~~~~~~~  171 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFL---------AFMIC--DNE---ISNFYKHPKKI  171 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhH---------HHHhc--CCc---ccccccChhhh
Confidence            99999999999999999999999999999999999999999888887         65554  322   34556678776


Q ss_pred             HHHcCCHHHHHHHHHcCC
Q psy9384         493 SAYMGHADIVSSILEYDA  510 (978)
Q Consensus       493 A~~~~~~~~v~~Ll~~g~  510 (978)
                      +   ++.+++++|++++.
T Consensus       172 ~---~n~ei~~~Lish~v  186 (300)
T PHA02884        172 L---INFDILKILVSHFI  186 (300)
T ss_pred             h---ccHHHHHHHHHHHH
Confidence            4   46899999999875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.71  E-value=2.9e-17  Score=155.09  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             CCCCCcHHHHHHHcCCH---HHHHHHHhCCCCCCcCC-CCCCcHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCccc
Q psy9384         408 DCEGWTPLRSASWGGHS---AVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAA  482 (978)
Q Consensus       408 ~~~~~t~L~~A~~~g~~---~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~  482 (978)
                      |..|.||||+|+..|+.   +++++|++.|++++.++ ..|.||||+|+..++.++         +++|+. .|++++..
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i---------~~~Ll~~~g~d~n~~  122 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYEL---------ATWLCNQPGVNMEIL  122 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHH---------HHHHHhCCCCCCccc
Confidence            44555555555555544   23455555555555554 245555555555555555         555554 35555555


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         483 DSEGRTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       483 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      +..|.|||++|+..|+.+++++|+++|++
T Consensus       123 ~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        123 NYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55555555555555555555555555544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.70  E-value=5.9e-17  Score=152.97  Aligned_cols=135  Identities=21%  Similarity=0.339  Sum_probs=112.5

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHhCCHH---HHHHHHHCCCCCCCCCC-
Q psy9384         337 TMFDSKNQSVLHKLCAENNINLLKTFLKSC---EALDLELVDKHGQTALNVAAHQGFVD---AVQILLEAGANINHTDC-  409 (978)
Q Consensus       337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~---~~~~~~~~~~~~~t~L~~A~~~g~~~---~v~~Ll~~g~~~~~~~~-  409 (978)
                      +..|..|.||||+|+..|+...+..+....   .+..+...|..|.||||+|+..|+.+   ++++|++.|++++.++. 
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            456778999999999999853222221100   01123456889999999999999874   68999999999999984 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCc
Q psy9384         410 EGWTPLRSASWGGHSAVVKLLLQ-SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN  480 (978)
Q Consensus       410 ~~~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~  480 (978)
                      .|+||||+|+..|+.+++++|++ .|++++..+..|.|||++|+..|+.++         +++|+++|++.+
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i---------~~~Ll~~ga~~~  153 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKM---------MNILRAKGAQCK  153 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCC
Confidence            89999999999999999999998 589999999999999999999999999         999999998764

>KOG0512|consensus

Probab=99.70  E-value=1.8e-16  Score=137.99  Aligned_cols=139  Identities=32%  Similarity=0.359  Sum_probs=113.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCc
Q psy9384         593 PLWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW  671 (978)
Q Consensus       593 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~  671 (978)
                      .+..|+..+....|+.|++..++ +|.+|.++.||||.|+.+|+++|++.|+..|              ++.+.+...|+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g--------------An~~a~T~~GW  131 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG--------------ANKEAKTNEGW  131 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHcc--------------CCcccccccCc
Confidence            35577777888888888777665 7788888888888888888888888888888              77788888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC-HHHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384         672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH-YHLVEMFLEQYEANVNQKSHDGRTALRVNM  745 (978)
Q Consensus       672 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~-~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~  745 (978)
                      ||||.|++..+.+++-.|+++|+|+|.......||||+|+.+.+ ...+++|+...+..+..++..+.||+.+|-
T Consensus       132 TPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  132 TPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             cchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            88888888888888888888888888888878888888887654 456777777778888888888888888877

>KOG0195|consensus

Probab=99.68  E-value=3.6e-17  Score=154.10  Aligned_cols=154  Identities=32%  Similarity=0.424  Sum_probs=128.7

Q ss_pred             HHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384         351 CAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL  430 (978)
Q Consensus       351 ~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~L  430 (978)
                      |..|+---|+..++. ...|.|.-|..|.+|||+||+.|+..+|+.|+.+|+.+|..+....||||+|+..||.++|+.|
T Consensus         8 cregna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHH
Confidence            344544444545543 5667888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy9384         431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA  510 (978)
Q Consensus       431 l~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~  510 (978)
                      ++..+|+|..+..|+|||||||.-|.-.|         .+-|+..|+.++..+++|.||+..|--.-..-+.+.--++|.
T Consensus        87 l~~kadvnavnehgntplhyacfwgydqi---------aedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq  157 (448)
T KOG0195|consen   87 LSRKADVNAVNEHGNTPLHYACFWGYDQI---------AEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQ  157 (448)
T ss_pred             HHHhcccchhhccCCCchhhhhhhcHHHH---------HHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999888         999999999999999999999988754433333333344676


Q ss_pred             CCcc
Q psy9384         511 DINQ  514 (978)
Q Consensus       511 ~~~~  514 (978)
                      +++.
T Consensus       158 ~~nr  161 (448)
T KOG0195|consen  158 SPNR  161 (448)
T ss_pred             CCCc
Confidence            6653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=4.4e-15  Score=125.44  Aligned_cols=89  Identities=44%  Similarity=0.646  Sum_probs=81.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy9384         347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV  426 (978)
Q Consensus       347 l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~i  426 (978)
                      ||+|+..|+++++++|++  .+.+++.    |.||||+||..|+.+++++|++.|++++.++..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~--~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE--KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH--TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHH--CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            799999999999999999  6666665    8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCcCC
Q psy9384         427 VKLLLQSGADVNCSD  441 (978)
Q Consensus       427 v~~Ll~~g~~~~~~~  441 (978)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=5.2e-15  Score=125.00  Aligned_cols=89  Identities=49%  Similarity=0.698  Sum_probs=82.4

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeee
Q psy9384         382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI  461 (978)
Q Consensus       382 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~  461 (978)
                      ||+||+.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.+|+.++  
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~--   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI--   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH--
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH--
Confidence            7999999999999999999988866    8899999999999999999999999999999999999999999999999  


Q ss_pred             eccchHHHHHHHHcCCCCcccC
Q psy9384         462 VLGPLCVVKLLLAAGAHVNAAD  483 (978)
Q Consensus       462 ~~~~~~vv~~Ll~~g~~~~~~~  483 (978)
                             +++|+++|++++.+|
T Consensus        75 -------~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 -------VKLLLEHGADVNIRN   89 (89)
T ss_dssp             -------HHHHHHTTT-TTSS-
T ss_pred             -------HHHHHHcCCCCCCcC
Confidence                   999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.59  E-value=2.8e-14  Score=155.83  Aligned_cols=200  Identities=23%  Similarity=0.214  Sum_probs=146.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCC---------CCccCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCC-Cc----ccCC
Q psy9384         559 TPLLVAAFEGHRDVCEILLENE---------ADQDHIDKSGRTPLWAAASM---GHASCVALLLFWGAY-VD----TIDA  621 (978)
Q Consensus       559 t~L~~a~~~~~~~iv~~Ll~~g---------~~~~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~-~~----~~~~  621 (978)
                      .++..+...+..+..+.|...+         -+.+.+...|.|.||.|.-+   ++.+++..|++.-.. +|    ....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            3455555555555555554433         34555566677888777653   445677777764321 11    1123


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCC---------CCccccCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy9384         622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGS---------LDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA  692 (978)
Q Consensus       622 ~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  692 (978)
                      .|+|+||.|+.+.+.++|++|++.|+++..-..+.-..+         .+..-.-..|+.||-+|+..++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            478888888888888888888888876654222111100         11111234688999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCC--CcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHH
Q psy9384         693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN--VNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNI  764 (978)
Q Consensus       693 g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~  764 (978)
                      |+|++..|..|+|.||+.+..-..+|..++++. |++  ...+|..|.|||..|+     +.|+.++.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~qgLTPLtLAa-----klGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL-GANALEHVRNNQGLTPLTLAA-----KLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhc-CCCccccccccCCCChHHHHH-----HhhhHHHHHHHHHh
Confidence            999999999999999999999999999999997 999  8899999999999999     99999999999943

>KOG0195|consensus

Probab=99.58  E-value=4.5e-15  Score=140.12  Aligned_cols=133  Identities=33%  Similarity=0.507  Sum_probs=119.1

Q ss_pred             HHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeecc
Q psy9384         386 AHQGFVDAVQILL-EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLG  464 (978)
Q Consensus       386 ~~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~  464 (978)
                      |+.|+.=-|++.| +...|.|.-|..|.+|||+||+.|+..+++.|+.+|+.+|..+....||||+|+..||.++     
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi-----   82 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI-----   82 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH-----
Confidence            4444443344333 4456788889999999999999999999999999999999999989999999999999999     


Q ss_pred             chHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384         465 PLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA  527 (978)
Q Consensus       465 ~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  527 (978)
                          |+.|++..+++|..++.|.||||+||..|...+.+-|+..|+-++..+..|.||+..|-
T Consensus        83 ----vqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   83 ----VQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             ----HHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence                99999999999999999999999999999999999999999999999999999998774

>KOG3676|consensus

Probab=99.56  E-value=6.8e-14  Score=152.88  Aligned_cols=245  Identities=21%  Similarity=0.178  Sum_probs=179.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCC---------CCCCcCCCCCCcHHHHHHhcCC---ceeeeeccchHHHHHHHHcCCC-
Q psy9384         412 WTPLRSASWGGHSAVVKLLLQSG---------ADVNCSDMGGRTALRAAAWGGH---LEVTIVLGPLCVVKLLLAAGAH-  478 (978)
Q Consensus       412 ~t~L~~A~~~g~~~iv~~Ll~~g---------~~~~~~~~~~~t~l~~A~~~~~---~~i~~~~~~~~vv~~Ll~~g~~-  478 (978)
                      +.++..|...+..+.+.-|+..+         .+++.+...|.|.||.|..+.+   -++         ++.|++.-.. 
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~l---------a~~LL~~~p~l  172 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNEL---------ARVLLEIFPKL  172 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHH---------HHHHHHHhHHH
Confidence            35677777777777777776654         4677777889999999988533   344         7777764321 


Q ss_pred             Cc----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCC
Q psy9384         479 VN----AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED  554 (978)
Q Consensus       479 ~~----~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~  554 (978)
                      +|    .....|.||||.|+.+.+.++|++|++.|+|++.+....   ...+    ...+..-        +..+..-.-
T Consensus       173 ind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~---FF~~----~dqk~~r--------k~T~Y~G~~  237 (782)
T KOG3676|consen  173 INDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGA---FFCP----DDQKASR--------KSTNYTGYF  237 (782)
T ss_pred             hhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc---ccCc----ccccccc--------cccCCccee
Confidence            11    123468999999999999999999999999998764311   0000    0000000        222222223


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CcccCCCCCcHHHHHHH
Q psy9384         555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY--VDTIDAEGRTVLSVAAA  632 (978)
Q Consensus       555 ~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~  632 (978)
                      ..|..||-.|++.++.+++++|+++|+|++..|..|+|.||..+..-..+|...+++.|++  ...++..|.|||..|++
T Consensus       238 YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  238 YFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             eeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH
Confidence            4688999999999999999999999999999999999999999999999999999999999  88899999999999999


Q ss_pred             cCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCC--CchHHHHHHHc
Q psy9384         633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC--GWTPLHYAAIE  680 (978)
Q Consensus       633 ~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~--g~t~L~~A~~~  680 (978)
                      -|+.++++.+++.........+.....-.+.+..|..  ..++|.+.+..
T Consensus       318 lGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  318 LGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             hhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            9999999999998333333333333333555555554  34666666544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.56  E-value=6.7e-14  Score=128.05  Aligned_cols=124  Identities=49%  Similarity=0.738  Sum_probs=102.9

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHh
Q psy9384         374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW  453 (978)
Q Consensus       374 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~  453 (978)
                      .+..|.||||+|+..|+.+++++|++.|.+.+..+..|.+|+|+|+..++.+++++|++.|++++..+..+.+|+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            35668888888888888888888888888777788888888888888888888888888887777777778888888888


Q ss_pred             cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9384         454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSIL  506 (978)
Q Consensus       454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  506 (978)
                      .++.++         +++|++.|.+.+..+..+.||++.|+..++.+++++|+
T Consensus        83 ~~~~~~---------~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDV---------VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHH---------HHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888877         88888888777778888888888888888888888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.53  E-value=5.1e-14  Score=108.77  Aligned_cols=104  Identities=35%  Similarity=0.486  Sum_probs=93.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      .-+.|+..+|.++.|+..+.  .+.+++..- .|++|||+|+-+|+.+++++|+..|++++.+|..|-|||..|++.||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~--~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN--EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH--ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            34789999999999999999  777777444 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAA  451 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A  451 (978)
                      ++|++|++.|++-.....+|.+.+..+
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999888888887665543

>PF05729 NACHT: NACHT domain

Probab=99.52  E-value=3.3e-14  Score=137.22  Aligned_cols=163  Identities=19%  Similarity=0.266  Sum_probs=96.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHHhh
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTI  117 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~  117 (978)
                      +++||+|+||+|||++++.++..+.......    ....+.+|++-+........    +++..+|..+.+........ 
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~-   71 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPP----SKFPYPFFFSLRDISDSNNS----RSLADLLFDQLPESIAPIEE-   71 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCccc----ccceEEEEEeehhhhhcccc----chHHHHHHHhhccchhhhHH-
Confidence            5899999999999999999998776432111    11234444444344333333    44444444432221111100 


Q ss_pred             hcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCC
Q psy9384         118 VEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPP  197 (978)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  197 (978)
                                           .+.    ..+    ...+++++||||+|||....+......+..++.+++..   ..++
T Consensus        72 ---------------------~~~----~~~----~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~---~~~~  119 (166)
T PF05729_consen   72 ---------------------LLQ----ELL----EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ---ALPP  119 (166)
T ss_pred             ---------------------HHH----HHH----HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh---ccCC
Confidence                                 111    111    13578999999999998643221123355566666653   2456


Q ss_pred             ceeeeeeeccccc-chhhcccCccccccccccchhhhhHHHHHHHHHhc
Q psy9384         198 WLFLFCTVRRQSK-SIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLA  245 (978)
Q Consensus       198 ~~~~~~~sr~~~~-~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~  245 (978)
                      ++++++++|+... ++...+.....+.+...+.    .|+++|++..+.
T Consensus       120 ~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~f~  164 (166)
T PF05729_consen  120 GVKLIITSRPRAFPDLRRRLKQAQILELEPFSE----EDIKQYLRKYFS  164 (166)
T ss_pred             CCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH----HHHHHHHHHHhh
Confidence            8899999988654 3666666666678766554    788888776654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.50  E-value=5e-13  Score=122.21  Aligned_cols=119  Identities=49%  Similarity=0.738  Sum_probs=53.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCC
Q psy9384         590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC  669 (978)
Q Consensus       590 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (978)
                      |.|||+.|+..++.+++++|++.+.+.+..+..|.+|++.|+..++.+++++|++.+              .+.+..+..
T Consensus         7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~--------------~~~~~~~~~   72 (126)
T cd00204           7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG--------------ADVNARDKD   72 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--------------CCccccCCC
Confidence            344444444444444444444444443444444444444444444444444444444              233333344


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q psy9384         670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF  722 (978)
Q Consensus       670 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~L  722 (978)
                      +.||+|.|+..++.+++++|+++|.+++..+..+.||+++|+..++.+++++|
T Consensus        73 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          73 GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            44444444444444444444444444444444444444444444444444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.42  E-value=4.7e-13  Score=103.49  Aligned_cols=103  Identities=31%  Similarity=0.469  Sum_probs=93.7

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      .-+.+++++|.++-|+.....|-++|..- .|++|||||+-+|+.+++.+|+..|++++.+|+.|.|||..|+..||.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            34788999999999999999998887664 89999999999999999999999999999999999999999999999999


Q ss_pred             eeeccchHHHHHHHHcCCCCcccCCCCCcHHHH
Q psy9384         460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA  492 (978)
Q Consensus       460 ~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~  492 (978)
                               |++|++.|++-.....+|.+.+..
T Consensus        83 ---------VklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   83 ---------VKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             ---------HHHHHHcCcccceeCCCchhHHhh
Confidence                     999999999988777777765543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.29  E-value=6.2e-12  Score=93.64  Aligned_cols=53  Identities=34%  Similarity=0.509  Sum_probs=45.9

Q ss_pred             CchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHH
Q psy9384         884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK  936 (978)
Q Consensus       884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~  936 (978)
                      .||||.|++.|+.+++++|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            89999999999999999999999999999999999999999999999999986

...

>KOG1710|consensus

Probab=99.29  E-value=1.7e-11  Score=116.36  Aligned_cols=114  Identities=32%  Similarity=0.427  Sum_probs=106.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcC
Q psy9384         344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHT-DCEGWTPLRSASWGG  422 (978)
Q Consensus       344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g  422 (978)
                      ..+|..+...|+.+....|++  .-..++.+|.+|.|+|..|+..|+.++|++|++.|+|+|.. +..+.||||+|+.+|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs--~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLS--TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHH--HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            468999999999999999998  55568999999999999999999999999999999999865 457889999999999


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      +.++.++|++.|+..+..+.-|.|+-..|+.-|+.++
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~C  127 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHEC  127 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchHH
Confidence            9999999999999999999999999999999999998

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.28  E-value=4.4e-11  Score=123.02  Aligned_cols=130  Identities=40%  Similarity=0.527  Sum_probs=116.0

Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCcCCC
Q psy9384         371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH-----SAVVKLLLQSGA---DVNCSDM  442 (978)
Q Consensus       371 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~-----~~iv~~Ll~~g~---~~~~~~~  442 (978)
                      ....+..+.++++.|+..+..+++++++..|++++.++..|.||||+|+..++     .+++++|++.|+   ..+..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            34556678899999999999999999999999999999999999999999999     899999999998   5566688


Q ss_pred             CCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384         443 GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD  509 (978)
Q Consensus       443 ~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  509 (978)
                      .|.||+|+|+..|+.++         +++|++.|++++..+..|.|+++.|+..++.++++.+++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~---------~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADI---------VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHH---------HHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999988         99999999999988899999999999999999999999876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.27  E-value=1e-11  Score=92.49  Aligned_cols=54  Identities=46%  Similarity=0.685  Sum_probs=44.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLL  431 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll  431 (978)
                      |.||||+||+.|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.25  E-value=5e-11  Score=122.62  Aligned_cols=127  Identities=39%  Similarity=0.537  Sum_probs=119.1

Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCC-----HHHHHHHHHCCC---CCCCCCCC
Q psy9384         339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGF-----VDAVQILLEAGA---NINHTDCE  410 (978)
Q Consensus       339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~~  410 (978)
                      .+..+.++++.++..+....+++++.  .+.+++..+..|.||||+|+..|+     .+++++|++.|+   ..+..+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLA--SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHH--cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            34556789999999999999999999  899999999999999999999999     999999999999   56677999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcC
Q psy9384         411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG  476 (978)
Q Consensus       411 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g  476 (978)
                      |.||||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.++         ++.+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~---------~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIEL---------VKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHH---------HHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999         99998876

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.24  E-value=7.7e-12  Score=93.40  Aligned_cols=55  Identities=35%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             hhhcc-CCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHH
Q psy9384         864 TDEHF-SRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVA  923 (978)
Q Consensus       864 L~~~g-~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A  923 (978)
                      |+++| ++++..+ ..|    .||||+||.+|+.++|++|++.|+|++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d-~~G----~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQD-KYG----NTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS------HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcC-CCC----CcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56677 8888888 888    9999999999999999999999999999999999999987

>KOG0515|consensus

Probab=99.16  E-value=7.5e-11  Score=121.27  Aligned_cols=91  Identities=34%  Similarity=0.526  Sum_probs=84.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384         346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA  425 (978)
Q Consensus       346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~  425 (978)
                      .|..|+..|.+++|+.++.  .-.|....+..|.|+||.|+..||.+||++|++.|+++|..|.+||||||+|+..++..
T Consensus       553 LLLDaaLeGEldlVq~~i~--ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIY--EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHhhhhcchHHHHHHHHH--hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            4567889999999999998  66778888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCC
Q psy9384         426 VVKLLLQSGADVN  438 (978)
Q Consensus       426 iv~~Ll~~g~~~~  438 (978)
                      +++.|+++|+-+-
T Consensus       631 ~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  631 MCKQLVESGAAVF  643 (752)
T ss_pred             HHHHHHhccceEE
Confidence            9999999997654

>KOG0515|consensus

Probab=99.16  E-value=1.1e-10  Score=119.96  Aligned_cols=125  Identities=29%  Similarity=0.295  Sum_probs=106.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy9384         627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP  706 (978)
Q Consensus       627 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~  706 (978)
                      |.-|+..|.+++|+-.+..-              .|...-+..|.|+||.|+..||++||++|++.|+++|..|.+|+||
T Consensus       554 LLDaaLeGEldlVq~~i~ev--------------~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTP  619 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEV--------------TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTP  619 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhh--------------cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCch
Confidence            45577889999999998776              5667778899999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHhhcCCCCcC-CCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384         707 LILAAQDGHYHLVEMFLEQYEANVNQ-KSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL  769 (978)
Q Consensus       707 L~~A~~~~~~~iv~~Ll~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~  769 (978)
                      ||.|+..++..+++.|++. |+.+-+ .-.++.|+...+-+.   ..|..++.+||...-.+.|
T Consensus       620 LHCAASCNnv~~ckqLVe~-GaavfAsTlSDmeTa~eKCee~---eeGY~~CsqyL~~vqesmG  679 (752)
T KOG0515|consen  620 LHCAASCNNVPMCKQLVES-GAAVFASTLSDMETAAEKCEEM---EEGYDQCSQYLYGVQESMG  679 (752)
T ss_pred             hhhhhhcCchHHHHHHHhc-cceEEeeecccccchhhhcchh---hhhHHHHHHHHHHHHHhhc
Confidence            9999999999999999998 666544 346788888877655   7899999999985433333

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.15  E-value=4e-11  Score=89.52  Aligned_cols=50  Identities=42%  Similarity=0.577  Sum_probs=18.4

Q ss_pred             CCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy9384         369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSA  418 (978)
Q Consensus       369 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A  418 (978)
                      .+++..|..|.||||+||..|+.++|++|++.|++++.+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            44455555555555555555555555555555555555555555555544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.13  E-value=1.7e-10  Score=134.65  Aligned_cols=86  Identities=34%  Similarity=0.426  Sum_probs=52.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384         346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA  425 (978)
Q Consensus       346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~  425 (978)
                      .|+.|+..|+.+.++.|++  .+.+++..|..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~--~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLT--GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            3555566666666666665  55555555666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhC
Q psy9384         426 VVKLLLQS  433 (978)
Q Consensus       426 iv~~Ll~~  433 (978)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            66666655

>KOG1710|consensus

Probab=99.13  E-value=3.8e-10  Score=107.38  Aligned_cols=121  Identities=34%  Similarity=0.504  Sum_probs=106.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccc-cCCC
Q psy9384         591 RTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH-RDNC  669 (978)
Q Consensus       591 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~~~  669 (978)
                      ..||.-++..++.+-...|++.--++|..|..|.++|..|+..|+.++++.|++.|              .|+|. ++..
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~g--------------aDvN~~qhg~   78 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG--------------ADVNDKQHGT   78 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC--------------CCcCcccccc
Confidence            47888888899998888888876678899999999999999999999999999999              55554 4567


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384         670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ  725 (978)
Q Consensus       670 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~  725 (978)
                      +.||||+|+.+|+.++.++|++.|+.+...+.-|+|+-.+|+.-|+.+.|..+-.+
T Consensus        79 ~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   79 LYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999888776543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.12  E-value=2.9e-10  Score=132.69  Aligned_cols=84  Identities=39%  Similarity=0.481  Sum_probs=79.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      ..|+.|+..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeec
Q psy9384         460 TIVL  463 (978)
Q Consensus       460 ~~~~  463 (978)
                      +..+
T Consensus       164 v~~L  167 (664)
T PTZ00322        164 VQLL  167 (664)
T ss_pred             HHHH
Confidence            7766

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.93  E-value=8.8e-09  Score=109.23  Aligned_cols=207  Identities=18%  Similarity=0.220  Sum_probs=118.3

Q ss_pred             cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHH
Q psy9384          15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQN   94 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~   94 (978)
                      |+--.+++.+||...    ..+.+++.|+|.+|+|||+||..++.....      +. .-..+.++...    ...+...
T Consensus         1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~------~~-~f~~v~wv~~~----~~~~~~~   65 (287)
T PF00931_consen    1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRI------KN-RFDGVIWVSLS----KNPSLEQ   65 (287)
T ss_dssp             -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHH------CC-CCTEEEEEEEE----S-SCCHH
T ss_pred             CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeeccccccc------cc-ccccccccccc----ccccccc
Confidence            344467788899873    247899999999999999999999855110      00 11233333333    2223388


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC
Q psy9384          95 FIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK  174 (978)
Q Consensus        95 ~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~  174 (978)
                      +++.|+.+|....+..        ..             ....+...+.+.+.+..     .++.+|+|.+++...    
T Consensus        66 ~~~~i~~~l~~~~~~~--------~~-------------~~~~~~~~~~l~~~L~~-----~~~LlVlDdv~~~~~----  115 (287)
T PF00931_consen   66 LLEQILRQLGEPDSSI--------SD-------------PKDIEELQDQLRELLKD-----KRCLLVLDDVWDEED----  115 (287)
T ss_dssp             HHHHHHHHHTCC-STS--------SC-------------CSSHHHHHHHHHHHHCC-----TSEEEEEEEE-SHHH----
T ss_pred             cccccccccccccccc--------cc-------------ccccccccccchhhhcc-----ccceeeeeeeccccc----
Confidence            8999999998874432        00             00012233444444433     389999999998651    


Q ss_pred             cCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccC-ccccccccccchhhhhHHHHHHHHHhcCchHHHhh
Q psy9384         175 IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLG-FHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVH  253 (978)
Q Consensus       175 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~-~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~  253 (978)
                            +..+...+.    ..+.+.++|+|||...  +...... ...+++...+.    +|-..++........   ..
T Consensus       116 ------~~~l~~~~~----~~~~~~kilvTTR~~~--v~~~~~~~~~~~~l~~L~~----~ea~~L~~~~~~~~~---~~  176 (287)
T PF00931_consen  116 ------LEELREPLP----SFSSGSKILVTTRDRS--VAGSLGGTDKVIELEPLSE----EEALELFKKRAGRKE---SE  176 (287)
T ss_dssp             ------H-------H----CHHSS-EEEEEESCGG--GGTTHHSCEEEEECSS--H----HHHHHHHHHHHTSHS-----
T ss_pred             ------ccccccccc----cccccccccccccccc--ccccccccccccccccccc----ccccccccccccccc---cc
Confidence                  111222222    1223568999998753  4443332 45577765443    555555555544222   11


Q ss_pred             cCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384         254 MNRDTAEMLNQLHIKSNGCFLYLERVLDGISN  285 (978)
Q Consensus       254 ~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~  285 (978)
                      ......++..+|+++.+|.+|.++++...+..
T Consensus       177 ~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~  208 (287)
T PF00931_consen  177 SPEDLEDLAKEIVEKCGGLPLALKLIASYLRS  208 (287)
T ss_dssp             --TTSCTHHHHHHHHTTT-HHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            22334567889999999999999999998853

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.87  E-value=2.2e-09  Score=105.46  Aligned_cols=149  Identities=18%  Similarity=0.296  Sum_probs=64.3

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC-c
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA-T   89 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~-~   89 (978)
                      .|+||+..++++.+.+...   ..+.++.++|+|.||+|||+|...+.+.+..         ....+.+..|...... .
T Consensus         1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   68 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAE---------RGGYVISINCDDSERNPY   68 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHH---------HT--EEEEEEETTTS-HH
T ss_pred             CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh---------cCCEEEEEEEeccccchh
Confidence            5999999999999999632   4557789999999999999999999866432         1222555555544211 1


Q ss_pred             cCHHHHHHHHHHHHhcCCCc-----hhHHHHhhhcchh---------hHh-hcchhhhhhCHHHHHHHhhhhhhhcCCCC
Q psy9384          90 FSVQNFIQSLVEQFSSSESP-----FSEAFSTIVEDES---------IKA-LLKSDQLLQDSDEVFKKALILPLAQIKHP  154 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~-----~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  154 (978)
                      .+...+++.++.|+....+.     ....+...+....         ... ..............+...+...+......
T Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~  148 (185)
T PF13191_consen   69 SPFRSALRQLIDQLLDQSQATTRSPLREKLAASLDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAAR  148 (185)
T ss_dssp             HHHHHHHHHHS------------------------------------------SS---HHHHH----HHHHHHHTTS-SE
T ss_pred             hHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhC
Confidence            11244455555554432221     0111111111000         000 00000011111223335666666555554


Q ss_pred             CCcEEEEEecccccccc
Q psy9384         155 KTSYFILVDSIDETHVT  171 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~  171 (978)
                      ..++++|||.+|+++..
T Consensus       149 ~~~~vlviDd~d~~~~~  165 (185)
T PF13191_consen  149 RKPLVLVIDDLDWADPA  165 (185)
T ss_dssp             ---EEEEEETTTHHHTT
T ss_pred             CCeEEEEEeCCCCCCcH
Confidence            45699999999999843

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.82  E-value=2e-08  Score=103.12  Aligned_cols=224  Identities=21%  Similarity=0.232  Sum_probs=112.9

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS   91 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~   91 (978)
                      |+||+--++++.+|+.+.      ..+..+|+|+.|+|||+|+..++..+...         +..+.|+.+. ..    .
T Consensus         1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~---------~~~~~y~~~~-~~----~   60 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK---------GYKVVYIDFL-EE----S   60 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT-----------EECCCHHCCT-TB----S
T ss_pred             CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc---------CCcEEEEecc-cc----h
Confidence            899999999999999974      46889999999999999999999776431         2233333221 11    2


Q ss_pred             HHHHHHHHHH--HHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          92 VQNFIQSLVE--QFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        92 ~~~~l~sl~~--QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      ....+..++.  ++..   .+.+.+..............  .........+.+++.. +..   ...+++||||.+|+..
T Consensus        61 ~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-l~~---~~~~~iiviDe~~~~~  131 (234)
T PF01637_consen   61 NESSLRSFIEETSLAD---ELSEALGISIPSITLEKISK--DLSEDSFSALERLLEK-LKK---KGKKVIIVIDEFQYLA  131 (234)
T ss_dssp             HHHHHHHHHHHHHHHC---HCHHHHHHHCCTSTTEEEEC--TS-GG-G--HHHHHHH-HHH---CHCCEEEEEETGGGGG
T ss_pred             hhhHHHHHHHHHHHHH---HHHHHHhhhcccccchhhhh--cchhhHHHHHHHHHHH-HHh---cCCcEEEEEecHHHHh
Confidence            2222333321  1111   12222222111111100000  0111122333333332 222   2345999999999998


Q ss_pred             -ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc--c----hhhcccCccccccccccchhhhhHHHHHHHH
Q psy9384         170 -VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK--S----IKKMFLGFHKLSLDDLRKSHVIRDMQQYILL  242 (978)
Q Consensus       170 -~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~--~----i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~  242 (978)
                       ..   .....++..+..++.....  ..++.++++++....  .    -...+.....+.++..+    .++...|+..
T Consensus       132 ~~~---~~~~~~~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~e~~~~~~~  202 (234)
T PF01637_consen  132 IAS---EEDKDFLKSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLS----KEEAREFLKE  202 (234)
T ss_dssp             BCT---TTTHHHHHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE--------HHHHHHHHHH
T ss_pred             hcc---cchHHHHHHHHHHHhhccc--cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCC----HHHHHHHHHH
Confidence             21   1245566777777776322  234555555554321  1    11233344456665544    4788888888


Q ss_pred             HhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHH
Q psy9384         243 RLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLER  278 (978)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~  278 (978)
                      .+.+..   ..  ...++.++++..-.+|.+.|+..
T Consensus       203 ~~~~~~---~~--~~~~~~~~~i~~~~gG~P~~l~~  233 (234)
T PF01637_consen  203 LFKELI---KL--PFSDEDIEEIYSLTGGNPRYLQE  233 (234)
T ss_dssp             HHHCC-----------HHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHhh---cc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence            766541   11  22455668999999999999864

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.58  E-value=7.1e-07  Score=98.15  Aligned_cols=229  Identities=14%  Similarity=0.141  Sum_probs=121.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      +.|.||+--++++.+|+...-  ..+.++.+.|+|+||+|||+++..+.+++......   ......+.|+-|.    ..
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~---~~~~~~~v~in~~----~~   85 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAED---RDVRVVTVYVNCQ----IL   85 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhc---cCCceEEEEEECC----CC
Confidence            579999988888777776421  11244678999999999999999999776421100   0011234444443    23


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .+...+++.|+.||.......+.           ..        .+..+.+..++. .+.   ...+++++|||-+|...
T Consensus        86 ~~~~~~~~~i~~~l~~~~~~~~~-----------~~--------~~~~~~~~~l~~-~l~---~~~~~~vlvIDE~d~L~  142 (365)
T TIGR02928        86 DTLYQVLVELANQLRGSGEEVPT-----------TG--------LSTSEVFRRLYK-ELN---ERGDSLIIVLDEIDYLV  142 (365)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCC-----------CC--------CCHHHHHHHHHH-HHH---hcCCeEEEEECchhhhc
Confidence            46778999999999631000000           00        001111222211 121   23557899999999985


Q ss_pred             ccCCCcCCCcchhhHHHHHHhc-cCCCC-Cceeeeeeeccccc--chhhc-ccCc--cccccccccchhhhhHHHHHHHH
Q psy9384         170 VTNKKIYSDKATCSIADLLARN-HHLFP-PWLFLFCTVRRQSK--SIKKM-FLGF--HKLSLDDLRKSHVIRDMQQYILL  242 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~-~~~~~-~~~~~~~~sr~~~~--~i~~~-~~~~--~~i~l~~~~~~~~~~Di~~yi~~  242 (978)
                      ..     ..+   .+..+++-. ....+ .++.+|++++....  .+... .+.+  ..+.+...    ..+++..++..
T Consensus       143 ~~-----~~~---~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~----~~~e~~~il~~  210 (365)
T TIGR02928       143 GD-----DDD---LLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPY----DAEELRDILEN  210 (365)
T ss_pred             cC-----CcH---HHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCC----CHHHHHHHHHH
Confidence            21     122   233333220 11223 45677777755321  12111 1122  23555443    34789999998


Q ss_pred             HhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         243 RLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                      ++..... .....+..-+.+..++.++.|....+--.|+..
T Consensus       211 r~~~~~~-~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a  250 (365)
T TIGR02928       211 RAEKAFY-DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA  250 (365)
T ss_pred             HHHhhcc-CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8862110 011122222355566777789888776665544

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>KOG0782|consensus

Probab=98.55  E-value=3.6e-07  Score=95.31  Aligned_cols=117  Identities=22%  Similarity=0.290  Sum_probs=103.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCH
Q psy9384         347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGAN--INHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       347 l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      +..|+..+++--+.....  .|.++-.++.+..+.||+|+..|+-++|+|+|++|..  .+..|..|.|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~--~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHL--NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHh--cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            667777777766666665  7888888899999999999999999999999999975  566788999999999999999


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA  474 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~  474 (978)
                      .++++|++.|+.+-..|..|.||-..|-..|..++         ..||-.
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dl---------aayle~  988 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDL---------AAYLES  988 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCCchH---------HHHHhh
Confidence            99999999999999999999999999999999998         777754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.53  E-value=1.1e-07  Score=59.66  Aligned_cols=27  Identities=33%  Similarity=0.528  Sum_probs=21.2

Q ss_pred             CchHHHHHHhCCHHHHHHHHHcCCCCC
Q psy9384         884 GEKISIAAQEGHEDCVRLLLHYGADPK  910 (978)
Q Consensus       884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~  910 (978)
                      .||||+||..|+.++|++|+++|+|+|
T Consensus         3 ~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    3 NTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            777778888888888888887777776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.53  E-value=1.4e-07  Score=59.28  Aligned_cols=28  Identities=46%  Similarity=0.762  Sum_probs=15.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCC
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEAGANIN  405 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~  405 (978)
                      |+||||+||+.|+.++|++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4555555555555555555555555544

>KOG0783|consensus

Probab=98.51  E-value=7.7e-08  Score=105.01  Aligned_cols=105  Identities=25%  Similarity=0.290  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHh
Q psy9384         354 NNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDC-EGWTPLRSASWGGHSAVVKLLLQ  432 (978)
Q Consensus       354 ~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~A~~~g~~~iv~~Ll~  432 (978)
                      +..+-++-+++...+.-.++.|..|+|+||.|+..|...+++||+++|++++.+|. .|+||||-|+.+|++|++-+|++
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            34434566665433444889999999999999999999999999999999998885 69999999999999999999999


Q ss_pred             CCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384         433 SGADVNCSDMGGRTALRAAAWGGHLE  458 (978)
Q Consensus       433 ~g~~~~~~~~~~~t~l~~A~~~~~~~  458 (978)
                      +|+.....|+.|.+||...++--...
T Consensus       108 ~g~SL~i~Dkeglsplq~~~r~~~~~  133 (1267)
T KOG0783|consen  108 KGRSLRIKDKEGLSPLQFLSRVLSST  133 (1267)
T ss_pred             cCCceEEecccCCCHHHHHhhccccc
Confidence            99999999999999999998744333

>KOG0506|consensus

Probab=98.48  E-value=1.6e-07  Score=96.22  Aligned_cols=94  Identities=32%  Similarity=0.403  Sum_probs=79.4

Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHH
Q psy9384         339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRS  417 (978)
Q Consensus       339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~  417 (978)
                      ++..+...+++|+..|++..++.+.-  .+.|++..|.+.+|+||.||..|+++++++|++. +++++.+|..|+|||.-
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l--~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFAL--QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHH--hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            34455667888999999998888877  7888888898899999999999999999998874 68888889999999999


Q ss_pred             HHHcCCHHHHHHHHhCC
Q psy9384         418 ASWGGHSAVVKLLLQSG  434 (978)
Q Consensus       418 A~~~g~~~iv~~Ll~~g  434 (978)
                      |-..+|.+++++|-+.-
T Consensus       580 A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHHHHHHHHh
Confidence            99999999999888764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.48  E-value=2e-06  Score=107.48  Aligned_cols=221  Identities=17%  Similarity=0.165  Sum_probs=127.6

Q ss_pred             CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384           6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus         6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      |......+.|.-+++.+.+.         ...++.+|+|++|+||||+++.....            .+ .++++..+. 
T Consensus        10 p~~~~~~~~R~rl~~~l~~~---------~~~~~~~v~apaG~GKTtl~~~~~~~------------~~-~~~w~~l~~-   66 (903)
T PRK04841         10 PVRLHNTVVRERLLAKLSGA---------NNYRLVLVTSPAGYGKTTLISQWAAG------------KN-NLGWYSLDE-   66 (903)
T ss_pred             CCCccccCcchHHHHHHhcc---------cCCCeEEEECCCCCCHHHHHHHHHHh------------CC-CeEEEecCc-
Confidence            33444555555555544322         25689999999999999999998732            12 466665543 


Q ss_pred             CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384          86 DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI  165 (978)
Q Consensus        86 ~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL  165 (978)
                        ...++..+++.|+..|....+..............          ..+....+..++. .+.   ....++++|||-+
T Consensus        67 --~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~l~---~~~~~~~lvlDD~  130 (903)
T PRK04841         67 --SDNQPERFASYLIAALQQATNGHCSKSEALAQKRQ----------YASLSSLFAQLFI-ELA---DWHQPLYLVIDDY  130 (903)
T ss_pred             --ccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCC----------cCCHHHHHHHHHH-HHh---cCCCCEEEEEeCc
Confidence              33567778888888886544432221111111100          0111122222222 222   2356799999999


Q ss_pred             ccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-hhhcccCccccccccccchhhhhHHHHHHHHHh
Q psy9384         166 DETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-IKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRL  244 (978)
Q Consensus       166 DE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l  244 (978)
                      +-++..       .+.+.+..++.    ..|+++++|++||..++- +..........+++.-.-.-+.+++..|+..++
T Consensus       131 h~~~~~-------~~~~~l~~l~~----~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~  199 (903)
T PRK04841        131 HLITNP-------EIHEAMRFFLR----HQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL  199 (903)
T ss_pred             CcCCCh-------HHHHHHHHHHH----hCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence            998732       22335555555    457788999998875431 111110111122321111224578888877655


Q ss_pred             cCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384         245 ASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISN  285 (978)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~  285 (978)
                      ..         ....+.++.|.+.++|.++.+++....+..
T Consensus       200 ~~---------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~  231 (903)
T PRK04841        200 SS---------PIEAAESSRLCDDVEGWATALQLIALSARQ  231 (903)
T ss_pred             CC---------CCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence            42         234566788999999999999998887754

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.45  E-value=2.9e-06  Score=94.36  Aligned_cols=186  Identities=14%  Similarity=0.137  Sum_probs=100.8

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      +.|.||+--++++..++...-  ..+..+.+.|+|+||+|||+++..+.+++...         ...+.+.|.+..  ..
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~---------~~~~~~v~in~~--~~   96 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI---------AVKVVYVYINCQ--ID   96 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh---------cCCcEEEEEECC--cC
Confidence            578899887777666654310  11234557899999999999999999765321         112333443322  23


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .++..++..++.||....++..            .         .+. ..+.+.+.+.+..   ...+++||||-+|...
T Consensus        97 ~~~~~~~~~i~~~l~~~~~~~~------------~---------~~~-~~~~~~~~~~l~~---~~~~~viviDE~d~l~  151 (394)
T PRK00411         97 RTRYAIFSEIARQLFGHPPPSS------------G---------LSF-DELFDKIAEYLDE---RDRVLIVALDDINYLF  151 (394)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCC------------C---------CCH-HHHHHHHHHHHHh---cCCEEEEEECCHhHhh
Confidence            3677889999999875211100            0         001 1111222222222   3456899999999986


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc-c-----hhhcccCccccccccccchhhhhHHHHHHHHH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK-S-----IKKMFLGFHKLSLDDLRKSHVIRDMQQYILLR  243 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~-~-----i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~  243 (978)
                      ...    ..+.+..+.++....   ...++.+|+++++... .     +...+ ....+.+..++    .+++..++..+
T Consensus       152 ~~~----~~~~l~~l~~~~~~~---~~~~v~vI~i~~~~~~~~~l~~~~~s~~-~~~~i~f~py~----~~e~~~il~~r  219 (394)
T PRK00411        152 EKE----GNDVLYSLLRAHEEY---PGARIGVIGISSDLTFLYILDPRVKSVF-RPEEIYFPPYT----ADEIFDILKDR  219 (394)
T ss_pred             ccC----CchHHHHHHHhhhcc---CCCeEEEEEEECCcchhhhcCHHHHhcC-CcceeecCCCC----HHHHHHHHHHH
Confidence            211    222333333333221   1125667777765421 1     11112 12345554444    37888888888


Q ss_pred             hc
Q psy9384         244 LA  245 (978)
Q Consensus       244 l~  245 (978)
                      +.
T Consensus       220 ~~  221 (394)
T PRK00411        220 VE  221 (394)
T ss_pred             HH
Confidence            75

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.40  E-value=4.3e-07  Score=59.12  Aligned_cols=31  Identities=45%  Similarity=0.629  Sum_probs=27.7

Q ss_pred             CchHHHHHHhCCHHHHHHHHHcCCCCCCCcc
Q psy9384         884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDH  914 (978)
Q Consensus       884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~  914 (978)
                      .||||+|+..|+.++|++|+++|++++.+|+
T Consensus         3 ~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    3 NTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             BBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            8999999999999999999999999988763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.39  E-value=2.2e-06  Score=78.41  Aligned_cols=125  Identities=20%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS  115 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~  115 (978)
                      +++.+.|+|+||+|||+++..+.+.+....    .......+.|+.+....    ++..+.+.++.++....+.      
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~------   68 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEA----EIKNHPDVIYVNCPSSR----TPRDFAQEILEALGLPLKS------   68 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHH----HHCCCEEEEEEEHHHHS----SHHHHHHHHHHHHT-SSSS------
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhh----hccCCCcEEEEEeCCCC----CHHHHHHHHHHHhCccccc------
Confidence            557899999999999999999996542100    00003344455554332    8899999999999876544      


Q ss_pred             hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCC
Q psy9384         116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLF  195 (978)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~  195 (978)
                                        ......+.+.+...+..    ....+||||..|.+. .      .++++.|..+..      
T Consensus        69 ------------------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~-~------~~~l~~l~~l~~------  113 (131)
T PF13401_consen   69 ------------------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF-S------DEFLEFLRSLLN------  113 (131)
T ss_dssp             ------------------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH-T------HHHHHHHHHHTC------
T ss_pred             ------------------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC-C------HHHHHHHHHHHh------
Confidence                              00112333444444444    334899999999983 1      223444444333      


Q ss_pred             CCceeeeeeecccc
Q psy9384         196 PPWLFLFCTVRRQS  209 (978)
Q Consensus       196 ~~~~~~~~~sr~~~  209 (978)
                      ..++.+++++.|..
T Consensus       114 ~~~~~vvl~G~~~l  127 (131)
T PF13401_consen  114 ESNIKVVLVGTPEL  127 (131)
T ss_dssp             SCBEEEEEEESSTT
T ss_pred             CCCCeEEEEEChhh
Confidence            45788999998853

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.38  E-value=4.3e-06  Score=94.65  Aligned_cols=219  Identities=15%  Similarity=0.187  Sum_probs=112.4

Q ss_pred             CcccccccchHHH----HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384          10 KKFFCREWAFVKL----VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus        10 ~~f~~r~w~~~~~----~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      +...||+-=++++    ..++.+.     +.+++|+|+|.||+|||+++..|++.|......  .  .-..+.|+|.+- 
T Consensus       755 D~LPhREeEIeeLasfL~paIkgs-----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeq--k--~lp~f~vVYINC-  824 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQS-----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQ--K--LLPSFNVFEING-  824 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhcC-----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhh--c--cCCCceEEEEeC-
Confidence            4567886655554    4555532     355789999999999999999999877532111  0  111233444331 


Q ss_pred             CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384          86 DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI  165 (978)
Q Consensus        86 ~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL  165 (978)
                       ..-.++..+++.|..||....|.-              .        -+..+.+.+++.....   ......+||||-+
T Consensus       825 -m~Lstp~sIYqvI~qqL~g~~P~~--------------G--------lsS~evLerLF~~L~k---~~r~v~IIILDEI  878 (1164)
T PTZ00112        825 -MNVVHPNAAYQVLYKQLFNKKPPN--------------A--------LNSFKILDRLFNQNKK---DNRNVSILIIDEI  878 (1164)
T ss_pred             -CccCCHHHHHHHHHHHHcCCCCCc--------------c--------ccHHHHHHHHHhhhhc---ccccceEEEeehH
Confidence             223577888999999996543320              0        0111233333332111   1233468999999


Q ss_pred             ccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc------cchhhcccCccccccccccchhhhhHHHHH
Q psy9384         166 DETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS------KSIKKMFLGFHKLSLDDLRKSHVIRDMQQY  239 (978)
Q Consensus       166 DE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~------~~i~~~~~~~~~i~l~~~~~~~~~~Di~~y  239 (978)
                      |.....     ..+   .|..|++... .....+.+|.++....      +.++..+ ....+....+.    .+++..-
T Consensus       879 D~L~kK-----~QD---VLYnLFR~~~-~s~SKLiLIGISNdlDLperLdPRLRSRL-g~eeIvF~PYT----aEQL~dI  944 (1164)
T PTZ00112        879 DYLITK-----TQK---VLFTLFDWPT-KINSKLVLIAISNTMDLPERLIPRCRSRL-AFGRLVFSPYK----GDEIEKI  944 (1164)
T ss_pred             hhhCcc-----HHH---HHHHHHHHhh-ccCCeEEEEEecCchhcchhhhhhhhhcc-ccccccCCCCC----HHHHHHH
Confidence            988632     112   3444444221 2233455555553211      1122222 12234444433    4778888


Q ss_pred             HHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         240 ILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       240 i~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      +..|+....   ....+..-+++.+++....|-   |+.+++.|+
T Consensus       945 Lk~RAe~A~---gVLdDdAIELIArkVAq~SGD---ARKALDILR  983 (1164)
T PTZ00112        945 IKERLENCK---EIIDHTAIQLCARKVANVSGD---IRKALQICR  983 (1164)
T ss_pred             HHHHHHhCC---CCCCHHHHHHHHHhhhhcCCH---HHHHHHHHH
Confidence            888877431   111122222333444466788   444455554

>KOG0783|consensus

Probab=98.38  E-value=1.7e-07  Score=102.34  Aligned_cols=85  Identities=18%  Similarity=0.084  Sum_probs=73.5

Q ss_pred             CCcccccccccccccccccc-----hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcc
Q psy9384         840 GHLIHAVDLSQRRQTSSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDH  914 (978)
Q Consensus       840 g~~~~~~~~~~~tpl~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~  914 (978)
                      +--.|++|..|+|+||+++.     ++++|+.+|++++..|...|    .||||.|..+|+.|++.+||.+|+....+|+
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG----~taLHRaiyyG~idca~lLL~~g~SL~i~Dk  117 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESG----YTALHRAIYYGNIDCASLLLSKGRSLRIKDK  117 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccccc----chHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence            44467777888888887777     78888888888888887888    9999999999999999999999999999999


Q ss_pred             cCccHHHHHHHcCh
Q psy9384         915 CGRNAFRVAAKSGH  928 (978)
Q Consensus       915 ~g~t~l~~A~~~~~  928 (978)
                      .|..||+..++-..
T Consensus       118 eglsplq~~~r~~~  131 (1267)
T KOG0783|consen  118 EGLSPLQFLSRVLS  131 (1267)
T ss_pred             cCCCHHHHHhhccc
Confidence            99999999888443

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.38  E-value=8.6e-06  Score=85.31  Aligned_cols=195  Identities=15%  Similarity=0.156  Sum_probs=105.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS  115 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~  115 (978)
                      ..+++.|+|+||+|||+++..+...+...         ...+++. +.    ...++..+++.++.++-........   
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~---------~~~~~~~-~~----~~~~~~~~l~~i~~~lG~~~~~~~~---  104 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLDQE---------RVVAAKL-VN----TRVDAEDLLRMVAADFGLETEGRDK---  104 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcCCC---------CeEEeee-eC----CCCCHHHHHHHHHHHcCCCCCCCCH---
Confidence            45789999999999999999998776421         1122221 11    1235567777777666332111000   


Q ss_pred             hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCC
Q psy9384         116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLF  195 (978)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~  195 (978)
                                        ......+...+.....    ...+.++|||-.|..+..        ..+.+..+..... ..
T Consensus       105 ------------------~~~~~~l~~~l~~~~~----~~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~-~~  153 (269)
T TIGR03015       105 ------------------AALLRELEDFLIEQFA----AGKRALLVVDEAQNLTPE--------LLEELRMLSNFQT-DN  153 (269)
T ss_pred             ------------------HHHHHHHHHHHHHHHh----CCCCeEEEEECcccCCHH--------HHHHHHHHhCccc-CC
Confidence                              0001122222222111    245678998888776532        1223333332211 11


Q ss_pred             CCceeeeeeecccccchhh-----cccC--ccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhh
Q psy9384         196 PPWLFLFCTVRRQSKSIKK-----MFLG--FHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIK  268 (978)
Q Consensus       196 ~~~~~~~~~sr~~~~~i~~-----~~~~--~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~  268 (978)
                      ...+.++++..+.......     .+..  ...+.+...+    .+|++.|+..++.....  ........+..+.|.+.
T Consensus       154 ~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~----~~e~~~~l~~~l~~~g~--~~~~~~~~~~~~~i~~~  227 (269)
T TIGR03015       154 AKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD----REETREYIEHRLERAGN--RDAPVFSEGAFDAIHRF  227 (269)
T ss_pred             CCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC----HHHHHHHHHHHHHHcCC--CCCCCcCHHHHHHHHHH
Confidence            2234556666654321111     0100  1234454433    48999999999874421  11123456789999999


Q ss_pred             chhhHHHHHHHHhhhh
Q psy9384         269 SNGCFLYLERVLDGIS  284 (978)
Q Consensus       269 a~g~flw~~~~~~~l~  284 (978)
                      ++|.+.++...++.+-
T Consensus       228 s~G~p~~i~~l~~~~~  243 (269)
T TIGR03015       228 SRGIPRLINILCDRLL  243 (269)
T ss_pred             cCCcccHHHHHHHHHH
Confidence            9999999988888763

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.35  E-value=5.7e-06  Score=89.25  Aligned_cols=191  Identities=15%  Similarity=0.135  Sum_probs=108.3

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .|.|++-..+.+..|++..      ..+.++|+|+||+|||+++..+...+...         .....+..++..+..  
T Consensus        18 ~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~---------~~~~~~i~~~~~~~~--   80 (319)
T PRK00440         18 EIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE---------DWRENFLELNASDER--   80 (319)
T ss_pred             HhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC---------ccccceEEecccccc--
Confidence            4778888888999999863      23357999999999999999998665431         111122222222111  


Q ss_pred             CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                      . ...++..+.+++...|.                                       .    ..+.-+++||..|....
T Consensus        81 ~-~~~~~~~i~~~~~~~~~---------------------------------------~----~~~~~vviiDe~~~l~~  116 (319)
T PRK00440         81 G-IDVIRNKIKEFARTAPV---------------------------------------G----GAPFKIIFLDEADNLTS  116 (319)
T ss_pred             c-hHHHHHHHHHHHhcCCC---------------------------------------C----CCCceEEEEeCcccCCH
Confidence            1 11233333333222110                                       0    02245888998887753


Q ss_pred             cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384         171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL  250 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~  250 (978)
                      ..        ...|.+++.    ..++...+|+++......+....+....+++....    ..|+..++...+...   
T Consensus       117 ~~--------~~~L~~~le----~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~----~~ei~~~l~~~~~~~---  177 (319)
T PRK00440        117 DA--------QQALRRTME----MYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK----KEAVAERLRYIAENE---  177 (319)
T ss_pred             HH--------HHHHHHHHh----cCCCCCeEEEEeCCccccchhHHHHhheeeeCCCC----HHHHHHHHHHHHHHc---
Confidence            21        123444443    23334556666543332222222233345554333    478888888777622   


Q ss_pred             HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                         .....++..+.+++.++|.+.++...++.+.
T Consensus       178 ---~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~  208 (319)
T PRK00440        178 ---GIEITDDALEAIYYVSEGDMRKAINALQAAA  208 (319)
T ss_pred             ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence               1234566788899999999999887777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.33  E-value=8.9e-07  Score=57.63  Aligned_cols=31  Identities=48%  Similarity=0.743  Sum_probs=16.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEAGANINHTD  408 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  408 (978)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4555555555555555555555555554443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=98.32  E-value=1.8e-06  Score=90.17  Aligned_cols=120  Identities=26%  Similarity=0.311  Sum_probs=97.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchH
Q psy9384         594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP  673 (978)
Q Consensus       594 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  673 (978)
                      +..|+..+++--++....+|.+.-..+.+..+.||+|+..|+-++|+|++++|+.            --.+..+..|.|+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~------------elld~~de~get~  937 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS------------ELLDMADETGETA  937 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH------------HHHHHHhhhhhHH
Confidence            3445555555445555667778888888889999999999999999999999853            2345567889999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhh
Q psy9384         674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ  725 (978)
Q Consensus       674 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~  725 (978)
                      ||.|+..++-.+.++|++.|+.....|..|.||-..|-+.|..++..||-..
T Consensus       938 lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  938 LHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999988899999999999999999998888654

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.30  E-value=1e-05  Score=88.08  Aligned_cols=217  Identities=15%  Similarity=0.109  Sum_probs=110.0

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.|++-+.+.+.+|+.++      ..+.+.++|+||+|||+++..+...+....       ....  +.+++..+   
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-------~~~~--~~~i~~~~---   76 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDP-------WENN--FTEFNVAD---   76 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcc-------cccc--eEEechhh---
Confidence            45789988889999999864      223578999999999999999987664311       0111  22322111   


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                           +.......+ ...|.+...+...   ... .        ......+..++.............-++|||-+|...
T Consensus        77 -----~~~~~~~~~-~~~~~~~~~~~~~---~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~  138 (337)
T PRK12402         77 -----FFDQGKKYL-VEDPRFAHFLGTD---KRI-R--------SSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR  138 (337)
T ss_pred             -----hhhcchhhh-hcCcchhhhhhhh---hhh-c--------cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC
Confidence                 000000111 1112211111110   000 0        001123333322221111111233489999998875


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      ..        ....|.+++...    +...++|+++......+...-+....+.+...    ..+++..++...+...  
T Consensus       139 ~~--------~~~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~----~~~~~~~~l~~~~~~~--  200 (337)
T PRK12402        139 ED--------AQQALRRIMEQY----SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAP----TDDELVDVLESIAEAE--  200 (337)
T ss_pred             HH--------HHHHHHHHHHhc----cCCCeEEEEeCChhhCchhhcCCceEEEecCC----CHHHHHHHHHHHHHHc--
Confidence            32        122344554432    33445666654333222222223334444322    3478888888766522  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          ......+..+.|++.+.|.+..+...++...
T Consensus       201 ----~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~  231 (337)
T PRK12402        201 ----GVDYDDDGLELIAYYAGGDLRKAILTLQTAA  231 (337)
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                1234567888999999999887766666543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.27  E-value=3.8e-05  Score=86.69  Aligned_cols=192  Identities=15%  Similarity=0.112  Sum_probs=115.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHH
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAF  114 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~  114 (978)
                      .+.+++.|+.++|+|||||++..++.+.          +...|+++-++.   .-..+..+++.|+.-|-.-.|...+..
T Consensus        35 ~~~RL~li~APAGfGKttl~aq~~~~~~----------~~~~v~Wlslde---~dndp~rF~~yLi~al~~~~p~~~~~a  101 (894)
T COG2909          35 NDYRLILISAPAGFGKTTLLAQWRELAA----------DGAAVAWLSLDE---SDNDPARFLSYLIAALQQATPTLGDEA  101 (894)
T ss_pred             CCceEEEEeCCCCCcHHHHHHHHHHhcC----------cccceeEeecCC---ccCCHHHHHHHHHHHHHHhCccccHHH
Confidence            3779999999999999999999986322          366788776664   445777888888888887777666555


Q ss_pred             HhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCC
Q psy9384         115 STIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHL  194 (978)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~  194 (978)
                      ..+...+..          .+....+..++.    ++....+++++|+|=.--+...       .+-.-+..|+.    .
T Consensus       102 ~~l~q~~~~----------~~l~~l~~~L~~----Ela~~~~pl~LVlDDyHli~~~-------~l~~~l~fLl~----~  156 (894)
T COG2909         102 QTLLQKHQY----------VSLESLLSSLLN----ELASYEGPLYLVLDDYHLISDP-------ALHEALRFLLK----H  156 (894)
T ss_pred             HHHHHhccc----------ccHHHHHHHHHH----HHHhhcCceEEEeccccccCcc-------cHHHHHHHHHH----h
Confidence            443333221          122233444433    3444466799999977665421       12223444444    6


Q ss_pred             CCCceeeeeeecccccchhhccc-CccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhH
Q psy9384         195 FPPWLFLFCTVRRQSKSIKKMFL-GFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCF  273 (978)
Q Consensus       195 ~~~~~~~~~~sr~~~~~i~~~~~-~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~f  273 (978)
                      .|+++.++++||..++--...++ .-.-++++...-.-..+.-..|+..+..         .+.-+.-...|.++++|--
T Consensus       157 ~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---------l~Ld~~~~~~L~~~teGW~  227 (894)
T COG2909         157 APENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---------LPLDAADLKALYDRTEGWA  227 (894)
T ss_pred             CCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---------CCCChHHHHHHHhhcccHH
Confidence            78899999999887652221111 1122344322222244566777776663         1222233466777777743

>PF14516 AAA_35: AAA-like domain

Probab=98.26  E-value=2e-05  Score=84.06  Aligned_cols=238  Identities=15%  Similarity=0.072  Sum_probs=143.2

Q ss_pred             CCCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeec
Q psy9384           2 TTETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHF   81 (978)
Q Consensus         2 ~~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff   81 (978)
                      .|.=+..+..++.|.-+-++..+=+.+       .+..+.|.|+-.+|||+|+..+.+++.+         .+..++|.=
T Consensus         3 ~g~~~~~~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~---------~~~~~v~id   66 (331)
T PF14516_consen    3 GGPLPLDSPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQ---------QGYRCVYID   66 (331)
T ss_pred             CCCCCCCCCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHH---------CCCEEEEEE
Confidence            466678888889999777776655554       3579999999999999999999977653         245555555


Q ss_pred             cccC-CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEE
Q psy9384          82 CQSY-DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFI  160 (978)
Q Consensus        82 ~~~~-~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i  160 (978)
                      |..- .....+...+++.++..+..+.. +...+.+.+.+. ..           +...+...|.+.+..  ....++++
T Consensus        67 ~~~~~~~~~~~~~~f~~~~~~~i~~~L~-l~~~l~~~w~~~-~~-----------~~~~~~~~~~~~ll~--~~~~~lVL  131 (331)
T PF14516_consen   67 LQQLGSAIFSDLEQFLRWFCEEISRQLK-LDEKLDEYWDEE-IG-----------SKISCTEYFEEYLLK--QIDKPLVL  131 (331)
T ss_pred             eecCCCcccCCHHHHHHHHHHHHHHHcC-CChhHHHHHHHh-cC-----------ChhhHHHHHHHHHHh--cCCCCEEE
Confidence            5532 33456788899999999988643 223333433311 11           112223333332211  12578999


Q ss_pred             EEeccccccccCCCcCCCcchhhHHHHHHhccCC-CCCceeeeeeecccccchhhcc-cCc---cccccccccchhhhhH
Q psy9384         161 LVDSIDETHVTNKKIYSDKATCSIADLLARNHHL-FPPWLFLFCTVRRQSKSIKKMF-LGF---HKLSLDDLRKSHVIRD  235 (978)
Q Consensus       161 viDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~sr~~~~~i~~~~-~~~---~~i~l~~~~~~~~~~D  235 (978)
                      +||.+|..-..  +...++++..|+.+....... ...++.++++.+.+...+...- +++   ..+.|..-    +.++
T Consensus       132 ~iDEiD~l~~~--~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~F----t~~e  205 (331)
T PF14516_consen  132 FIDEIDRLFEY--PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDF----TPEE  205 (331)
T ss_pred             EEechhhhccC--cchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCC----CHHH
Confidence            99999998642  223356666776666644321 1234556665554332221110 111   13344322    3456


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhcc
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNG  286 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~  286 (978)
                      |+..+... .         ....+...++|..-.+|-+-.++.+|..|.+.
T Consensus       206 v~~L~~~~-~---------~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~  246 (331)
T PF14516_consen  206 VQELAQRY-G---------LEFSQEQLEQLMDWTGGHPYLVQKACYLLVEE  246 (331)
T ss_pred             HHHHHHhh-h---------ccCCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            65554321 1         11223338899999999999999999999764

>KOG0818|consensus

Probab=98.25  E-value=3.3e-06  Score=87.19  Aligned_cols=85  Identities=32%  Similarity=0.401  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         381 ALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       381 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      -||..++.|+.+..-.||..|+++|..+ ..|.||||+|++.|+.--+++|+-+|+|+...|.+|.||+.+|-..||.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            4888888899888888888888888765 368889999999888888888888888888888888888888888888888


Q ss_pred             eeeccchHHHHHHHH
Q psy9384         460 TIVLGPLCVVKLLLA  474 (978)
Q Consensus       460 ~~~~~~~~vv~~Ll~  474 (978)
                               .+-|++
T Consensus       216 ---------aeRl~e  221 (669)
T KOG0818|consen  216 ---------AERLVE  221 (669)
T ss_pred             ---------HHHHHH
Confidence                     666655

>KOG0818|consensus

Probab=98.22  E-value=5.1e-06  Score=85.81  Aligned_cols=86  Identities=27%  Similarity=0.381  Sum_probs=80.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         346 VLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      .||..++.|+++..-.|+.  .|++.|+.+. .|.||||.|++.|+..-+++|+-+|+|+...|.+|.||+.+|-..||.
T Consensus       136 QLhasvRt~nlet~LRll~--lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLS--LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHH--cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            5899999999999999999  8999988764 699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q psy9384         425 AVVKLLLQS  433 (978)
Q Consensus       425 ~iv~~Ll~~  433 (978)
                      ++.+.|++.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            999999875

>KOG0506|consensus

Probab=98.20  E-value=1.4e-06  Score=89.40  Aligned_cols=91  Identities=25%  Similarity=0.303  Sum_probs=86.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHh
Q psy9384         667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMK  746 (978)
Q Consensus       667 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~  746 (978)
                      +..+...+++|++.|+...++-+.-.|.|++..|.+.+|+||.|+..|+.+++++|++..+.+++.+|..|+|||.-|. 
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~-  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK-  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH-
Confidence            3445677899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccchhHHHHHHHHHH
Q psy9384         747 NVTKLSFWYLLIQPLL  762 (978)
Q Consensus       747 ~~~~~~~~~~~~~~Ll  762 (978)
                          ..+|.+++++|.
T Consensus       582 ----~F~h~~v~k~L~  593 (622)
T KOG0506|consen  582 ----HFKHKEVVKLLE  593 (622)
T ss_pred             ----hcCcHHHHHHHH
Confidence                899999999998

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.19  E-value=1e-05  Score=82.16  Aligned_cols=178  Identities=16%  Similarity=0.110  Sum_probs=100.9

Q ss_pred             cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHH
Q psy9384          15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQN   94 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~   94 (978)
                      .++.++.+++|+...      ..+.++|+|+||+|||+|+..+...+..         ....+.|+-|..-.        
T Consensus        22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~~~---------~~~~~~~i~~~~~~--------   78 (226)
T TIGR03420        22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAAEE---------RGKSAIYLPLAELA--------   78 (226)
T ss_pred             cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHHHh---------cCCcEEEEeHHHHH--------
Confidence            466778899997643      5678999999999999999999854321         12233333332111        


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC
Q psy9384          95 FIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK  174 (978)
Q Consensus        95 ~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~  174 (978)
                        ..    .       .+                          .+ .       ..   ...-++|||.+|..+...  
T Consensus        79 --~~----~-------~~--------------------------~~-~-------~~---~~~~lLvIDdi~~l~~~~--  106 (226)
T TIGR03420        79 --QA----D-------PE--------------------------VL-E-------GL---EQADLVCLDDVEAIAGQP--  106 (226)
T ss_pred             --Hh----H-------HH--------------------------HH-h-------hc---ccCCEEEEeChhhhcCCh--
Confidence              00    0       00                          00 0       00   011289999999986321  


Q ss_pred             cCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-------hhhcccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         175 IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-------IKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       175 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-------i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                          ...+.+..++..... .  ...++++++.....       +...+.....+.+...+.    +++..++...... 
T Consensus       107 ----~~~~~L~~~l~~~~~-~--~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~----~e~~~~l~~~~~~-  174 (226)
T TIGR03420       107 ----EWQEALFHLYNRVRE-A--GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD----EEKIAALQSRAAR-  174 (226)
T ss_pred             ----HHHHHHHHHHHHHHH-c--CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH----HHHHHHHHHHHHH-
Confidence                012234444443211 1  12567777654322       222332234566654433    6667777654431 


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                           ......++..+.|.+...|+...+.-+++.+.
T Consensus       175 -----~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~  206 (226)
T TIGR03420       175 -----RGLQLPDEVADYLLRHGSRDMGSLMALLDALD  206 (226)
T ss_pred             -----cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence                 12345667788888999999999998888775

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG3899 Predicted ATPase [General function prediction only]

Probab=98.17  E-value=1.4e-05  Score=95.49  Aligned_cols=239  Identities=17%  Similarity=0.195  Sum_probs=146.8

Q ss_pred             ccccccchHHH-HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          12 FFCREWAFVKL-VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        12 f~~r~w~~~~~-~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      +.||++=.+.+ ..|-+.    ..+.+.+..+.|.+|.|||.|.+.|......        .....+.++|.++.....-
T Consensus         2 l~GRe~ev~~Ll~~f~~v----~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~--------~~~~~i~~~f~q~~~~ipl   69 (849)
T COG3899           2 LYGRETELAQLLAAFDRV----SKGRGEVVLVAGESGIGKSALVNEVHKPITQ--------QRGYFIKGKFDQFERNIPL   69 (849)
T ss_pred             CCchHhHHHHHHHHHHHH----hCCCeEEEEEeecCCCcHHHHHHHHHHHHhc--------cceeeeHhhcccccCCCch
Confidence            57898844444 445444    4456779999999999999999999866543        2466777777656655444


Q ss_pred             CHH-HHHHHHHHHHhcCCCchhHHHH----hhh-------------------cchhhHhhcchhhhhhCHHHHHHHhhhh
Q psy9384          91 SVQ-NFIQSLVEQFSSSESPFSEAFS----TIV-------------------EDESIKALLKSDQLLQDSDEVFKKALIL  146 (978)
Q Consensus        91 ~~~-~~l~sl~~QL~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~  146 (978)
                      ++- ..+|++..||......-....+    +..                   .++.......     ......+-.++..
T Consensus        70 ~~lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~-----~~~~~r~n~~~~~  144 (849)
T COG3899          70 SPLVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSP-----TAAQNRFNLAFLR  144 (849)
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhccc-----chhHHHHHHHHHH
Confidence            444 5899999999664432111111    100                   0000000000     1111222223333


Q ss_pred             hhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc--CCCCCceeeeeeecccccchhhcccCcccccc
Q psy9384         147 PLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH--HLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSL  224 (978)
Q Consensus       147 ~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l  224 (978)
                      .+........++++|+|-|...|..+        ++.|..+.....  ...-..|..+...++....+.+.......|.|
T Consensus       145 ~i~~~~~~~~plVi~leDlhWaD~~S--------L~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L  216 (849)
T COG3899         145 FIQVFTAEEHPLVIVLEDLHWADSAS--------LKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITL  216 (849)
T ss_pred             HHHHHHhccCCeEEEEecccccChhH--------HHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEec
Confidence            33333445668999999999998764        456666665443  00001234444455555556666666677887


Q ss_pred             ccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhcc
Q psy9384         225 DDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNG  286 (978)
Q Consensus       225 ~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~  286 (978)
                      ...    +..|+..+|.+.+.+.       ........+.+.+|.+|+++++.-++..+-+.
T Consensus       217 ~PL----~~~d~~~lV~~~l~~~-------~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~  267 (849)
T COG3899         217 APL----SRADTNQLVAATLGCT-------KLLPAPLLELIFEKTKGNPFFIEEFLKALYEE  267 (849)
T ss_pred             CcC----chhhHHHHHHHHhCCc-------ccccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence            544    4589999999888743       23345677889999999999999999988653

>KOG0705|consensus

Probab=98.15  E-value=3.7e-06  Score=88.58  Aligned_cols=84  Identities=26%  Similarity=0.315  Sum_probs=68.7

Q ss_pred             hhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCC
Q psy9384         861 PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD  940 (978)
Q Consensus       861 v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~  940 (978)
                      +-+|+.+|.....-. ..|.+.++|+||+||..|++.+.++|+=+|+|+-..|..|+|||.||-+.|..++++.|+++|+
T Consensus       640 ~~lLLAhg~~~e~~~-t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  640 AILLLAHGSREEVNE-TCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             HHHHHhccCchhhhc-cccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            334455554333222 3344455999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCccc
Q psy9384         941 DSEYF  945 (978)
Q Consensus       941 ~~~~~  945 (978)
                      ..+..
T Consensus       719 p~e~~  723 (749)
T KOG0705|consen  719 PDECG  723 (749)
T ss_pred             Ccccc
Confidence            77653

>PLN03025 replication factor C subunit; Provisional

Probab=98.14  E-value=2.3e-05  Score=83.59  Aligned_cols=191  Identities=13%  Similarity=0.128  Sum_probs=103.5

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .+.|.+-+.+.++.|+.+.      .-+-+.++|+||+|||+++..+...+....         ....+...+..  +.+
T Consensus        14 ~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~---------~~~~~~eln~s--d~~   76 (319)
T PLN03025         14 DIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPN---------YKEAVLELNAS--DDR   76 (319)
T ss_pred             HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhccc---------Cccceeeeccc--ccc
Confidence            4556666667788888864      223478999999999999999986653210         00011111111  111


Q ss_pred             CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                      . ...+|.++..++.....                                         . .....-+++||-.|....
T Consensus        77 ~-~~~vr~~i~~~~~~~~~-----------------------------------------~-~~~~~kviiiDE~d~lt~  113 (319)
T PLN03025         77 G-IDVVRNKIKMFAQKKVT-----------------------------------------L-PPGRHKIVILDEADSMTS  113 (319)
T ss_pred             c-HHHHHHHHHHHHhcccc-----------------------------------------C-CCCCeEEEEEechhhcCH
Confidence            1 12334333333221000                                         0 012335888998888763


Q ss_pred             cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384         171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL  250 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~  250 (978)
                      ..    +    ..|.+.+.    ..+...++++++......+....+.+..+++....    .+++..++.......   
T Consensus       114 ~a----q----~aL~~~lE----~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~----~~~l~~~L~~i~~~e---  174 (319)
T PLN03025        114 GA----Q----QALRRTME----IYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS----DQEILGRLMKVVEAE---  174 (319)
T ss_pred             HH----H----HHHHHHHh----cccCCceEEEEeCCccccchhHHHhhhcccCCCCC----HHHHHHHHHHHHHHc---
Confidence            31    1    12333333    33445566666654433233333334456665433    367777777655421   


Q ss_pred             HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                         .-...++..+.+++.++|...-+-..++..
T Consensus       175 ---gi~i~~~~l~~i~~~~~gDlR~aln~Lq~~  204 (319)
T PLN03025        175 ---KVPYVPEGLEAIIFTADGDMRQALNNLQAT  204 (319)
T ss_pred             ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence               123345678899999999987777666643

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=4.4e-05  Score=88.29  Aligned_cols=207  Identities=14%  Similarity=0.098  Sum_probs=110.8

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..++|-+.+...|+.|+...+     -...+.|+|+||+|||+++..+...+....       ......+..|.      
T Consensus        16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~-------~~~~~pCg~C~------   77 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQ-------GVTATPCGVCS------   77 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCcc-------CCCCCCCCCch------
Confidence            456788888888999988642     345678999999999999999997764310       00001111221      


Q ss_pred             cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                               -+.++... .+.+.+    + ..   .+        ..-.+.++.++... .......+.-++|||-.|..
T Consensus        78 ---------sC~~i~~g~~~DviE----i-dA---as--------~~kVDdIReLie~v-~~~P~~gk~KViIIDEAh~L  131 (944)
T PRK14949         78 ---------SCVEIAQGRFVDLIE----V-DA---AS--------RTKVDDTRELLDNV-QYRPSRGRFKVYLIDEVHML  131 (944)
T ss_pred             ---------HHHHHhcCCCceEEE----e-cc---cc--------ccCHHHHHHHHHHH-HhhhhcCCcEEEEEechHhc
Confidence                     01111111 011000    0 00   00        00001112111111 11111134468888888887


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      ..+.        ...|.+.+.    ..|.++++|+.+......+.-.++.+..+.+..+.    ..+|..|+.+.+... 
T Consensus       132 T~eA--------qNALLKtLE----EPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs----~eEI~~~L~~il~~E-  194 (944)
T PRK14949        132 SRSS--------FNALLKTLE----EPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLT----QDEIGTQLNHILTQE-  194 (944)
T ss_pred             CHHH--------HHHHHHHHh----ccCCCeEEEEECCCchhchHHHHHhheEEeCCCCC----HHHHHHHHHHHHHHc-
Confidence            5321        223333333    34556777776544333232334456667775554    489999998877642 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG  282 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~  282 (978)
                           ......+....|...++|....+-..++.
T Consensus       195 -----gI~~edeAL~lIA~~S~Gd~R~ALnLLdQ  223 (944)
T PRK14949        195 -----QLPFEAEALTLLAKAANGSMRDALSLTDQ  223 (944)
T ss_pred             -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                 12234567788899999998887777654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.09  E-value=2.2e-05  Score=85.31  Aligned_cols=106  Identities=10%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      +.-++|||-.|-...+.        ...|.+.+.    .-|.++.+|+++......+....+.+..+.+..+..    .+
T Consensus       121 ~~KV~IIDEah~Ls~~A--------~NALLKtLE----EPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~----~~  184 (484)
T PRK14956        121 KYKVYIIDEVHMLTDQS--------FNALLKTLE----EPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPL----SV  184 (484)
T ss_pred             CCEEEEEechhhcCHHH--------HHHHHHHhh----cCCCceEEEeecCChhhccHHHHhhhheeeecCCCH----HH
Confidence            34588888888775321        223333332    334566766666543332233344555566654443    68


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                      |..|+...+...      .....++....|++.|+|...-|-..++.+
T Consensus       185 i~~~L~~i~~~E------gi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~  226 (484)
T PRK14956        185 LQDYSEKLCKIE------NVQYDQEGLFWIAKKGDGSVRDMLSFMEQA  226 (484)
T ss_pred             HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            888888766532      123345678999999999988888777764

>KOG0522|consensus

Probab=98.08  E-value=8.9e-06  Score=85.61  Aligned_cols=89  Identities=30%  Similarity=0.482  Sum_probs=77.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      -++|++....+.+-....+.......++..|..|.||||+|+..|+.+.++.|+..|+++..+|..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            35889988888776666444225667888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q psy9384         425 AVVKLLLQS  433 (978)
Q Consensus       425 ~iv~~Ll~~  433 (978)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            988888875

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.02  E-value=3.6e-05  Score=87.04  Aligned_cols=106  Identities=12%  Similarity=0.076  Sum_probs=64.5

Q ss_pred             cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHH
Q psy9384         157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDM  236 (978)
Q Consensus       157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di  236 (978)
                      .-++|||-.|....+.        ...|.+.+.    ..|..+++|+++......+....+.+..+.+..+.    ..+|
T Consensus       120 ~KVIIIDEad~Ls~~A--------~NALLKtLE----EPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls----~eeI  183 (709)
T PRK08691        120 YKVYIIDEVHMLSKSA--------FNAMLKTLE----EPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMT----AQQV  183 (709)
T ss_pred             cEEEEEECccccCHHH--------HHHHHHHHH----hCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCC----HHHH
Confidence            3578888888765321        223444444    23456777777644332222333445555654444    3788


Q ss_pred             HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..++...+...      ......+....|++.++|....+...++.+.
T Consensus       184 ~~~L~~Il~kE------gi~id~eAL~~Ia~~A~GslRdAlnLLDqai  225 (709)
T PRK08691        184 ADHLAHVLDSE------KIAYEPPALQLLGRAAAGSMRDALSLLDQAI  225 (709)
T ss_pred             HHHHHHHHHHc------CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99988776632      1233456778999999999999888887654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.01  E-value=8.5e-05  Score=84.18  Aligned_cols=205  Identities=13%  Similarity=0.093  Sum_probs=106.8

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS   91 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~   91 (978)
                      ++|.+-+.+.++.|+++.+     -...+.|+|++|+|||+++..+...+..                   ......  .
T Consensus        18 VIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnC-------------------e~~~~~--~   71 (830)
T PRK07003         18 LVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNC-------------------ETGVTS--Q   71 (830)
T ss_pred             HcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcC-------------------ccCCCC--C
Confidence            4566666667889988642     3456789999999999999999865431                   111000  0


Q ss_pred             HHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          92 VQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        92 ~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                      +-+ .+..+.++.. .++++.+    + .. .  +        ....+.+++++....... ...+.-++|||-.|....
T Consensus        72 PCG-~C~sCr~I~~G~h~DviE----I-DA-a--s--------~rgVDdIReLIe~a~~~P-~~gr~KVIIIDEah~LT~  133 (830)
T PRK07003         72 PCG-VCRACREIDEGRFVDYVE----M-DA-A--S--------NRGVDEMAALLERAVYAP-VDARFKVYMIDEVHMLTN  133 (830)
T ss_pred             CCc-ccHHHHHHhcCCCceEEE----e-cc-c--c--------cccHHHHHHHHHHHHhcc-ccCCceEEEEeChhhCCH
Confidence            000 0111222221 1111110    0 00 0  0        000122333333221111 112234677888887753


Q ss_pred             cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384         171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL  250 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~  250 (978)
                      +.        ...|.+.+.    ..|.++++|+++......+.-..+.+..+.+..+..    ++|..++...+...   
T Consensus       134 ~A--------~NALLKtLE----EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~----eeIv~~L~~Il~~E---  194 (830)
T PRK07003        134 HA--------FNAMLKTLE----EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA----GHIVSHLERILGEE---  194 (830)
T ss_pred             HH--------HHHHHHHHH----hcCCCeEEEEEECChhhccchhhhheEEEecCCcCH----HHHHHHHHHHHHHc---
Confidence            21        223444444    345577888877665543444455666777765544    77877776655421   


Q ss_pred             HhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384         251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG  282 (978)
Q Consensus       251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~  282 (978)
                         ......+....|.+.++|...-+-..++.
T Consensus       195 ---gI~id~eAL~lIA~~A~GsmRdALsLLdQ  223 (830)
T PRK07003        195 ---RIAFEPQALRLLARAAQGSMRDALSLTDQ  223 (830)
T ss_pred             ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence               12234567788889999987765555443

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.97  E-value=0.00015  Score=74.83  Aligned_cols=108  Identities=15%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc--chhh-cccCccccccccccchh
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK--SIKK-MFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~--~i~~-~~~~~~~i~l~~~~~~~  231 (978)
                      .++++++||-+--.+..-    ++    .|.-.+.       .+..+++-...+.|  .+.. .++.+..+++..++.  
T Consensus       103 gr~tiLflDEIHRfnK~Q----QD----~lLp~vE-------~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~--  165 (436)
T COG2256         103 GRRTILFLDEIHRFNKAQ----QD----ALLPHVE-------NGTIILIGATTENPSFELNPALLSRARVFELKPLSS--  165 (436)
T ss_pred             CCceEEEEehhhhcChhh----hh----hhhhhhc-------CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCH--
Confidence            567899988777766431    11    1211111       12334444444333  2333 344556677765554  


Q ss_pred             hhhHHHHHHHHHhc-CchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHh
Q psy9384         232 VIRDMQQYILLRLA-SEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLD  281 (978)
Q Consensus       232 ~~~Di~~yi~~~l~-~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~  281 (978)
                        +||...+..-+. +...+.+......++..+.|+..++|--.-+-..++
T Consensus       166 --~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE  214 (436)
T COG2256         166 --EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLE  214 (436)
T ss_pred             --HHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHH
Confidence              889888877333 223333333335577889999999998444333333

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.96  E-value=5.7e-05  Score=76.38  Aligned_cols=108  Identities=17%  Similarity=0.089  Sum_probs=61.1

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc-------chhhcccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK-------SIKKMFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~-------~i~~~~~~~~~i~l~~~~~~~  231 (978)
                      +++||-+|-+...  +...    +.+.+++.....  ..+..++++|+.++.       +++.++.....+++...+   
T Consensus       100 lliiDdi~~~~~~--~~~~----~~lf~l~n~~~e--~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~---  168 (235)
T PRK08084        100 LVCIDNIECIAGD--ELWE----MAIFDLYNRILE--SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLS---  168 (235)
T ss_pred             EEEEeChhhhcCC--HHHH----HHHHHHHHHHHH--cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCC---
Confidence            6888888877532  1111    123344443321  112357777765533       333444333556665433   


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .++....+..+....      .-...+++.+-|++++.|.+.-+.-+++.|.
T Consensus       169 -~~~~~~~l~~~a~~~------~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  214 (235)
T PRK08084        169 -DEEKLQALQLRARLR------GFELPEDVGRFLLKRLDREMRTLFMTLDQLD  214 (235)
T ss_pred             -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence             245555555434311      1345678999999999999988888887764

>KOG0511|consensus

Probab=97.96  E-value=2.3e-05  Score=78.40  Aligned_cols=69  Identities=25%  Similarity=0.355  Sum_probs=58.2

Q ss_pred             hHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCC--cccccchhhhhh
Q psy9384         886 KISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS--EYFVHYYYYYNS  954 (978)
Q Consensus       886 ~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~--~~~~~~~~l~~A  954 (978)
                      -|..||+.|.++.|++|++.|.++|..|.....||.+|+-.||.++|++|+++||=.  +...|.-|+..|
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            578899999999999999999999999999999999999999999999999999744  445554444333

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.93  E-value=0.00012  Score=82.09  Aligned_cols=207  Identities=13%  Similarity=0.070  Sum_probs=110.9

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .++|.+.+...+..|+.+.+     -...+.++|+||+|||+++..+...+.....       .....+-.|        
T Consensus        16 dVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~-------~~~~pCg~C--------   75 (702)
T PRK14960         16 ELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETG-------VTSTPCEVC--------   75 (702)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC-------CCCCCCccC--------
Confidence            34677777778899998642     3567899999999999999999866532100       000000011        


Q ss_pred             CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                             .-++++.. ..+++.+.     ..   .+        ....+.+++++...- ......+.-++|||-.|...
T Consensus        76 -------~sC~~I~~g~hpDviEI-----DA---As--------~~~VddIReli~~~~-y~P~~gk~KV~IIDEVh~LS  131 (702)
T PRK14960         76 -------ATCKAVNEGRFIDLIEI-----DA---AS--------RTKVEDTRELLDNVP-YAPTQGRFKVYLIDEVHMLS  131 (702)
T ss_pred             -------HHHHHHhcCCCCceEEe-----cc---cc--------cCCHHHHHHHHHHHh-hhhhcCCcEEEEEechHhcC
Confidence                   11122211 22221110     00   00        000122333222211 11111233477788888775


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      .+.        ...|.+.+.    ..|..+++|+++...........+.+..+++..+..    .+|..++...+...  
T Consensus       132 ~~A--------~NALLKtLE----EPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~----eEI~k~L~~Il~kE--  193 (702)
T PRK14960        132 THS--------FNALLKTLE----EPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAV----DEITKHLGAILEKE--  193 (702)
T ss_pred             HHH--------HHHHHHHHh----cCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCH----HHHHHHHHHHHHHc--
Confidence            321        234455554    334566777766543322223335566667754443    78888888776532  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                          ......+....|++.++|....+-..++.+
T Consensus       194 ----gI~id~eAL~~IA~~S~GdLRdALnLLDQa  223 (702)
T PRK14960        194 ----QIAADQDAIWQIAESAQGSLRDALSLTDQA  223 (702)
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                223445677889999999998887776654

>KOG2384|consensus

Probab=97.92  E-value=2.5e-05  Score=70.59  Aligned_cols=68  Identities=24%  Similarity=0.223  Sum_probs=62.5

Q ss_pred             cCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcC-CCCCCCcccCccHHHHHHHcChHHHHHHHHHcCC
Q psy9384         868 FSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYG-ADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD  940 (978)
Q Consensus       868 g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~  940 (978)
                      +.++|.+| ..|    .|||++|+..|+.+.+.||+.+| +.+...|..|.++..+|-+.|+.++|..|.++-.
T Consensus         2 e~~in~rD-~fg----WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARD-AFG----WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchh-hhc----chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            35677788 778    99999999999999999999999 8999999999999999999999999999998843

>KOG0511|consensus

Probab=97.91  E-value=2.6e-05  Score=78.04  Aligned_cols=54  Identities=48%  Similarity=0.597  Sum_probs=26.7

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy9384         382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA  435 (978)
Q Consensus       382 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~  435 (978)
                      |..||+.|..+.|++|++.|.++|..|....+||.+|+..||.++|++|+++|+
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            444444455555555555444444444444445555555555555555555443

>PRK04195 replication factor C large subunit; Provisional

Probab=97.89  E-value=0.00017  Score=81.69  Aligned_cols=193  Identities=18%  Similarity=0.162  Sum_probs=104.0

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..+.|++-..+.+.+|+..-.  .....+.+.|+|+||+|||+++..+..++.              .-+..++..+  .
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~--------------~~~ielnasd--~   75 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYG--------------WEVIELNASD--Q   75 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEEcccc--c
Confidence            345666666677888877521  111257899999999999999999986542              1112222221  1


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      ++ ...++.++...+...+                                          +. ..++-+||||-.|...
T Consensus        76 r~-~~~i~~~i~~~~~~~s------------------------------------------l~-~~~~kvIiIDEaD~L~  111 (482)
T PRK04195         76 RT-ADVIERVAGEAATSGS------------------------------------------LF-GARRKLILLDEVDGIH  111 (482)
T ss_pred             cc-HHHHHHHHHHhhccCc------------------------------------------cc-CCCCeEEEEecCcccc
Confidence            11 1223333332221100                                          00 0134689999999876


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-hcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      ...    .......|.+++...      ...+|+++........ ..-+.+..+.+.....    .++..++...+... 
T Consensus       112 ~~~----d~~~~~aL~~~l~~~------~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~----~~i~~~L~~i~~~e-  176 (482)
T PRK04195        112 GNE----DRGGARAILELIKKA------KQPIILTANDPYDPSLRELRNACLMIEFKRLST----RSIVPVLKRICRKE-  176 (482)
T ss_pred             ccc----chhHHHHHHHHHHcC------CCCEEEeccCccccchhhHhccceEEEecCCCH----HHHHHHHHHHHHHc-
Confidence            321    112234455555422      1235555543332111 1222344566644333    67777777655421 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                           ......++.+.|++++.|...-+-..++.+.
T Consensus       177 -----gi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a  207 (482)
T PRK04195        177 -----GIECDDEALKEIAERSGGDLRSAINDLQAIA  207 (482)
T ss_pred             -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence                 1224467889999999999887766666544

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.87  E-value=0.00012  Score=79.51  Aligned_cols=207  Identities=11%  Similarity=0.085  Sum_probs=106.0

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..+.|-+.+.+.++.++...+     -...+.++|+||+|||+++..+...+......                ...+ .
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~----------------~~~p-c   73 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI----------------TSNP-C   73 (363)
T ss_pred             hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC----------------CCCC-C
Confidence            445677777778888887532     34568899999999999999998665321000                0000 0


Q ss_pred             cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                      ..     +..+.++... .+++.+.     . +.  +        ....+.+++++.. +.........-++|||-.|..
T Consensus        74 ~~-----c~~c~~~~~~~~~d~~~~-----~-~~--~--------~~~v~~ir~i~~~-~~~~p~~~~~kviIIDEa~~l  131 (363)
T PRK14961         74 RK-----CIICKEIEKGLCLDLIEI-----D-AA--S--------RTKVEEMREILDN-IYYSPSKSRFKVYLIDEVHML  131 (363)
T ss_pred             CC-----CHHHHHHhcCCCCceEEe-----c-cc--c--------cCCHHHHHHHHHH-HhcCcccCCceEEEEEChhhc
Confidence            00     0011111111 1111000     0 00  0        0001122222221 111111123458899988887


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                      ....        ...+.+.+.    ..|..+++++++.... .+... .+.+..+++...+    .+++..|+..++...
T Consensus       132 ~~~a--------~naLLk~lE----e~~~~~~fIl~t~~~~-~l~~tI~SRc~~~~~~~l~----~~el~~~L~~~~~~~  194 (363)
T PRK14961        132 SRHS--------FNALLKTLE----EPPQHIKFILATTDVE-KIPKTILSRCLQFKLKIIS----EEKIFNFLKYILIKE  194 (363)
T ss_pred             CHHH--------HHHHHHHHh----cCCCCeEEEEEcCChH-hhhHHHHhhceEEeCCCCC----HHHHHHHHHHHHHHc
Confidence            6321        112333333    2345666777664432 23332 2334556665443    378888888777632


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                            .....++..+.+++.++|...-+-..++.+
T Consensus       195 ------g~~i~~~al~~ia~~s~G~~R~al~~l~~~  224 (363)
T PRK14961        195 ------SIDTDEYALKLIAYHAHGSMRDALNLLEHA  224 (363)
T ss_pred             ------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                  122345667788899999988777666655

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.87  E-value=0.00014  Score=81.46  Aligned_cols=208  Identities=13%  Similarity=0.142  Sum_probs=110.3

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..+.|++.+.+.+..|+...+     -+..+.++|+||+|||++|..+...+.....       ...   ..|.      
T Consensus        16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~-------~~~---~~Cg------   74 (605)
T PRK05896         16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNP-------KDG---DCCN------   74 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCC-------CCC---CCCc------
Confidence            346788888899999987632     3467889999999999999999866542110       000   0111      


Q ss_pred             cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                       .     +..++++... +|++.+.     ..   .+        ....+.++.++.. +.......+.=++|||-.|..
T Consensus        75 -~-----C~sCr~i~~~~h~DiieI-----da---as--------~igVd~IReIi~~-~~~~P~~~~~KVIIIDEad~L  131 (605)
T PRK05896         75 -S-----CSVCESINTNQSVDIVEL-----DA---AS--------NNGVDEIRNIIDN-INYLPTTFKYKVYIIDEAHML  131 (605)
T ss_pred             -c-----cHHHHHHHcCCCCceEEe-----cc---cc--------ccCHHHHHHHHHH-HHhchhhCCcEEEEEechHhC
Confidence             0     1122222221 2221110     00   00        0001122222221 111111122336888888876


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                      ..+.        ...|.+.+.    ..|..+.+|+++.... .+.. ..+.+..+++....    ..++..++...+...
T Consensus       132 t~~A--------~NaLLKtLE----EPp~~tvfIL~Tt~~~-KLl~TI~SRcq~ieF~~Ls----~~eL~~~L~~il~ke  194 (605)
T PRK05896        132 STSA--------WNALLKTLE----EPPKHVVFIFATTEFQ-KIPLTIISRCQRYNFKKLN----NSELQELLKSIAKKE  194 (605)
T ss_pred             CHHH--------HHHHHHHHH----hCCCcEEEEEECCChH-hhhHHHHhhhhhcccCCCC----HHHHHHHHHHHHHHc
Confidence            5321        123444444    2344555655553322 2332 23345566665444    378888888777522


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                            ......+..+.+++.++|....|...++.+.
T Consensus       195 ------gi~Is~eal~~La~lS~GdlR~AlnlLekL~  225 (605)
T PRK05896        195 ------KIKIEDNAIDKIADLADGSLRDGLSILDQLS  225 (605)
T ss_pred             ------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                  1223455678899999999888888888765

>KOG0705|consensus

Probab=97.87  E-value=4.4e-05  Score=80.78  Aligned_cols=94  Identities=27%  Similarity=0.327  Sum_probs=80.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy9384         627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP  706 (978)
Q Consensus       627 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~  706 (978)
                      |..|+....+..+-+|+.+|....          .+....+..|.|+||+|+..|++.+.++|+=+|+|+-..|..|+|+
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e----------~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~  697 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREE----------VNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTA  697 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchh----------hhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchh
Confidence            556777788899999999985422          3344456778999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHhhcCCCCc
Q psy9384         707 LILAAQDGHYHLVEMFLEQYEANVN  731 (978)
Q Consensus       707 L~~A~~~~~~~iv~~Ll~~~~~~~~  731 (978)
                      |.||-+.|..+++..|++. |+..+
T Consensus       698 l~yar~a~sqec~d~llq~-gcp~e  721 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQY-GCPDE  721 (749)
T ss_pred             hhhHhhcccHHHHHHHHHc-CCCcc
Confidence            9999999999999999996 77643

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.86  E-value=0.00012  Score=78.18  Aligned_cols=51  Identities=27%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..|+||+-+.+.+..|+...... .+..+.+.|+|+||+|||+|+..+...+
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~   54 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEM   54 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999998742100 1123458899999999999999998554

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.83  E-value=0.00015  Score=81.30  Aligned_cols=107  Identities=14%  Similarity=0.155  Sum_probs=64.5

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      ..-++|||-.|....+.        ...|.+.+.    ..|..+.+|+++......+....+.+..+++..+..    .+
T Consensus       119 ~~kViIIDEa~~ls~~a--------~naLLK~LE----epp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~----~e  182 (546)
T PRK14957        119 RYKVYLIDEVHMLSKQS--------FNALLKTLE----EPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ----AD  182 (546)
T ss_pred             CcEEEEEechhhccHHH--------HHHHHHHHh----cCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCH----HH
Confidence            45688888888876421        223444444    345566666655332222223334556667755443    78


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      |..++...+...      .....++..+.+++.++|....+-..++.+.
T Consensus       183 I~~~L~~il~~e------gi~~e~~Al~~Ia~~s~GdlR~alnlLek~i  225 (546)
T PRK14957        183 IKDQLKIILAKE------NINSDEQSLEYIAYHAKGSLRDALSLLDQAI  225 (546)
T ss_pred             HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            998888766532      1234456678899999998887777776553

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=0.00019  Score=78.83  Aligned_cols=106  Identities=13%  Similarity=0.180  Sum_probs=62.4

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcc-cCccccccccccchhhhh
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMF-LGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~-~~~~~i~l~~~~~~~~~~  234 (978)
                      +.-++|||-.|....+.        ...|.+.+.    ..|+...+|+++.... .+.+.+ +.+..+++..+.    .+
T Consensus       127 ~~kvvIIdea~~l~~~~--------~~~LLk~LE----ep~~~t~~Il~t~~~~-kl~~tl~sR~~~v~f~~l~----~~  189 (397)
T PRK14955        127 RYRVYIIDEVHMLSIAA--------FNAFLKTLE----EPPPHAIFIFATTELH-KIPATIASRCQRFNFKRIP----LE  189 (397)
T ss_pred             CeEEEEEeChhhCCHHH--------HHHHHHHHh----cCCCCeEEEEEeCChH-HhHHHHHHHHHHhhcCCCC----HH
Confidence            34588898888875321        123344443    2334445555443222 233222 223445554333    47


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      |+..|+...+...      .....++..+.|++.++|.+..+...++.+.
T Consensus       190 ei~~~l~~~~~~~------g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~  233 (397)
T PRK14955        190 EIQQQLQGICEAE------GISVDADALQLIGRKAQGSMRDAQSILDQVI  233 (397)
T ss_pred             HHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999998777622      2335567789999999999998888877664

>KOG2384|consensus

Probab=97.82  E-value=4.4e-05  Score=69.12  Aligned_cols=76  Identities=29%  Similarity=0.294  Sum_probs=66.7

Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q psy9384         368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG-ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG  443 (978)
Q Consensus       368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~  443 (978)
                      +.++|.+|..|+|+++.|+..|+.+.|.||+.+| +.+...|..+.+++.+|-..|..++++.|.+...+-...++.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns   78 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS   78 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence            4578999999999999999999999999999999 889999999999999999999999999999875554443333

>PLN03210 Resistant to P

Probab=97.80  E-value=0.00027  Score=89.23  Aligned_cols=52  Identities=21%  Similarity=0.203  Sum_probs=43.0

Q ss_pred             CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384           7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus         7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...+.|+||+--++++.+|+.-.    ..+.+++-|.|++|+||||||..+...+.
T Consensus       181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~l~  232 (1153)
T PLN03210        181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSRLS  232 (1153)
T ss_pred             cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence            34567999999999999999752    33668999999999999999999986543

syringae 6; Provisional

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.80  E-value=0.00026  Score=80.69  Aligned_cols=207  Identities=13%  Similarity=0.056  Sum_probs=112.5

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .++|-+-+...+...+...+     -...++++|+||+|||+++..+...+....          .    +  ...+- .
T Consensus        17 divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~----------~----~--~~~pC-g   74 (647)
T PRK07994         17 EVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCET----------G----I--TATPC-G   74 (647)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhcc----------C----C--CCCCC-C
Confidence            45566777777777777531     234478999999999999999986653210          0    0  00000 0


Q ss_pred             CHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                           -+..++++... +|++.+.     .. .  +        ..-.+.+++++.... ......+.-++|||..|...
T Consensus        75 -----~C~~C~~i~~g~~~D~iei-----da-a--s--------~~~VddiR~li~~~~-~~p~~g~~KV~IIDEah~Ls  132 (647)
T PRK07994         75 -----ECDNCREIEQGRFVDLIEI-----DA-A--S--------RTKVEDTRELLDNVQ-YAPARGRFKVYLIDEVHMLS  132 (647)
T ss_pred             -----CCHHHHHHHcCCCCCceee-----cc-c--c--------cCCHHHHHHHHHHHH-hhhhcCCCEEEEEechHhCC
Confidence                 12455555542 2222111     00 0  0        000123333332211 11112344588899888876


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      .+.        ...|.+.+.    .-|.++++|+++......+.-..+.+..+.+..+..    ++|..|+...+...  
T Consensus       133 ~~a--------~NALLKtLE----EPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~----~ei~~~L~~il~~e--  194 (647)
T PRK07994        133 RHS--------FNALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV----EQIRQQLEHILQAE--  194 (647)
T ss_pred             HHH--------HHHHHHHHH----cCCCCeEEEEecCCccccchHHHhhheEeeCCCCCH----HHHHHHHHHHHHHc--
Confidence            432        223444444    345567777766544332223344566677755443    79999998877532  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                          .....++....|+..|+|....+-..++..
T Consensus       195 ----~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqa  224 (647)
T PRK07994        195 ----QIPFEPRALQLLARAADGSMRDALSLTDQA  224 (647)
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                122334566788899999998887777543

>KOG0522|consensus

Probab=97.79  E-value=4e-05  Score=80.87  Aligned_cols=80  Identities=29%  Similarity=0.362  Sum_probs=70.4

Q ss_pred             cHHHHHHHhCCHHHHHHHH--HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCc
Q psy9384         380 TALNVAAHQGFVDAVQILL--EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL  457 (978)
Q Consensus       380 t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~  457 (978)
                      .|+|+++.....+-...++  +.+..++.+|..|+||||+|+..|+.+.++.|+.+|+++..+++.|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            4599999887766555433  34556888999999999999999999999999999999999999999999999999999


Q ss_pred             ee
Q psy9384         458 EV  459 (978)
Q Consensus       458 ~i  459 (978)
                      ++
T Consensus       102 q~  103 (560)
T KOG0522|consen  102 QI  103 (560)
T ss_pred             HH
Confidence            88

>KOG3609|consensus

Probab=97.78  E-value=0.00011  Score=82.58  Aligned_cols=133  Identities=23%  Similarity=0.158  Sum_probs=101.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCC----CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH
Q psy9384         557 GMTPLLVAAFEGHRDVCEILLENE----ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA  632 (978)
Q Consensus       557 ~~t~L~~a~~~~~~~iv~~Ll~~g----~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  632 (978)
                      +..-...|+.+|+...|+..++..    .++|..|.-|+++|+.|+.+.+.+++++|++.....       ..+|-.|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            334567889999998888877642    456777888999999999999999999999886644       457889999


Q ss_pred             cCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q psy9384         633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD  700 (978)
Q Consensus       633 ~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d  700 (978)
                      .|..++|+.++.+.........    ........-..+.||+.+|+..+++|+++.|+++|+.+..+.
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~----~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLER----SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHhcccccchhcc----ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            9999999999988643222111    001111223456799999999999999999999999887653

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.78  E-value=0.0004  Score=76.12  Aligned_cols=199  Identities=13%  Similarity=0.158  Sum_probs=104.0

Q ss_pred             CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC
Q psy9384           9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA   88 (978)
Q Consensus         9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~   88 (978)
                      -..+.|.+-+.+.+.+|+...+     -.+.+.++|+||+|||+++..+...+......    .+.....|-++.-+.. 
T Consensus        16 ~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~----~~~~~~~~~~~~l~~~-   85 (367)
T PRK14970         16 FDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYD----DPNEDFSFNIFELDAA-   85 (367)
T ss_pred             HHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCCCcceEEeccc-
Confidence            3455677777888999998632     44678899999999999999998765431100    0000011111110000 


Q ss_pred             ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                      ......-++.++.++..                                             .....++-+++||-.|..
T Consensus        86 ~~~~~~~i~~l~~~~~~---------------------------------------------~p~~~~~kiviIDE~~~l  120 (367)
T PRK14970         86 SNNSVDDIRNLIDQVRI---------------------------------------------PPQTGKYKIYIIDEVHML  120 (367)
T ss_pred             cCCCHHHHHHHHHHHhh---------------------------------------------ccccCCcEEEEEeChhhc
Confidence            00001112222222110                                             000123347888888876


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      ...        ....+.+.+.    ..|....+|+++......+....+.+..+++....    .+++..++...+.+. 
T Consensus       121 ~~~--------~~~~ll~~le----~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~----~~~l~~~l~~~~~~~-  183 (367)
T PRK14970        121 SSA--------AFNAFLKTLE----EPPAHAIFILATTEKHKIIPTILSRCQIFDFKRIT----IKDIKEHLAGIAVKE-  183 (367)
T ss_pred             CHH--------HHHHHHHHHh----CCCCceEEEEEeCCcccCCHHHHhcceeEecCCcc----HHHHHHHHHHHHHHc-
Confidence            422        1122333332    22334455554432222222222334455554333    478888888766522 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                           .-...++..+.|+++++|...-+.-.++.+.
T Consensus       184 -----g~~i~~~al~~l~~~~~gdlr~~~~~lekl~  214 (367)
T PRK14970        184 -----GIKFEDDALHIIAQKADGALRDALSIFDRVV  214 (367)
T ss_pred             -----CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                 1224457788899999999888877777664

>PTZ00202 tuzin; Provisional

Probab=97.77  E-value=0.00014  Score=76.55  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=61.3

Q ss_pred             CCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecc
Q psy9384           3 TETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFC   82 (978)
Q Consensus         3 ~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~   82 (978)
                      ++.|-+...|.||+--+..+.+=+.+.   +.+..++..|+|++|||||+|+..++..+.             .++||..
T Consensus       255 ~~lPa~~~~FVGReaEla~Lr~VL~~~---d~~~privvLtG~~G~GKTTLlR~~~~~l~-------------~~qL~vN  318 (550)
T PTZ00202        255 QSAPAVIRQFVSREAEESWVRQVLRRL---DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-------------MPAVFVD  318 (550)
T ss_pred             cCCCCCccCCCCcHHHHHHHHHHHhcc---CCCCceEEEEECCCCCCHHHHHHHHHhcCC-------------ceEEEEC
Confidence            356777889999988888877777653   223456899999999999999999995532             3355442


Q ss_pred             ccCCCCccCHHHHHHHHHHHHhc
Q psy9384          83 QSYDLATFSVQNFIQSLVEQFSS  105 (978)
Q Consensus        83 ~~~~~~~~~~~~~l~sl~~QL~~  105 (978)
                      - .     ++..+|++++.+|-.
T Consensus       319 p-r-----g~eElLr~LL~ALGV  335 (550)
T PTZ00202        319 V-R-----GTEDTLRSVVKALGV  335 (550)
T ss_pred             C-C-----CHHHHHHHHHHHcCC
Confidence            2 2     569999999999996

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.77  E-value=0.00043  Score=78.80  Aligned_cols=213  Identities=13%  Similarity=0.116  Sum_probs=110.1

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|+|-+-+.+.+..|+...+     -...++++|++|+|||+++..+...+-.....     ....+..--|.      
T Consensus        16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~-----~~~~~~~~pCg------   79 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD-----GQGGITATPCG------   79 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcc-----cccCCCCCCCC------
Confidence            345666666777899998642     44568899999999999999998554311000     00000000010      


Q ss_pred             cCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 FSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                            -+.-+.++.. .+|++.+.     ..   .+        ..-.+.+++++... .......+.-++|||-.|..
T Consensus        80 ------~C~~C~~i~~g~h~D~~el-----da---as--------~~~Vd~iReli~~~-~~~p~~g~~KV~IIDEvh~L  136 (618)
T PRK14951         80 ------VCQACRDIDSGRFVDYTEL-----DA---AS--------NRGVDEVQQLLEQA-VYKPVQGRFKVFMIDEVHML  136 (618)
T ss_pred             ------ccHHHHHHHcCCCCceeec-----Cc---cc--------ccCHHHHHHHHHHH-HhCcccCCceEEEEEChhhC
Confidence                  0111222221 22221110     00   00        00012233333221 11111123347888888887


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      ..+.           ...|+... ..-|..+++|+++......+....+.+..+++..+..    .+|..++...+... 
T Consensus       137 s~~a-----------~NaLLKtL-EEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~----eei~~~L~~i~~~e-  199 (618)
T PRK14951        137 TNTA-----------FNAMLKTL-EEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAP----ETVLEHLTQVLAAE-  199 (618)
T ss_pred             CHHH-----------HHHHHHhc-ccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCH----HHHHHHHHHHHHHc-
Confidence            6431           22233222 2345566777666332222333444566677755443    79999988776522 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                           ......+....|++.++|....+-..++.+
T Consensus       200 -----gi~ie~~AL~~La~~s~GslR~al~lLdq~  229 (618)
T PRK14951        200 -----NVPAEPQALRLLARAARGSMRDALSLTDQA  229 (618)
T ss_pred             -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 122345677888999999988887766644

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.77  E-value=0.00043  Score=77.19  Aligned_cols=106  Identities=12%  Similarity=0.099  Sum_probs=65.7

Q ss_pred             cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHH
Q psy9384         157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDM  236 (978)
Q Consensus       157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di  236 (978)
                      .-++|||..|....+.        ...|.+.+.    ..|+.+++|+++......+....+.+..+++..+.    ..+|
T Consensus       118 ~KVvIIDEad~Lt~~A--------~NALLK~LE----Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls----~~ei  181 (535)
T PRK08451        118 FKIFIIDEVHMLTKEA--------FNALLKTLE----EPPSYVKFILATTDPLKLPATILSRTQHFRFKQIP----QNSI  181 (535)
T ss_pred             eEEEEEECcccCCHHH--------HHHHHHHHh----hcCCceEEEEEECChhhCchHHHhhceeEEcCCCC----HHHH
Confidence            4578899888876321        223444444    33556777776644322122223345556665444    4899


Q ss_pred             HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..++...+....      ....++..+.|++.++|....+...++.+.
T Consensus       182 ~~~L~~Il~~EG------i~i~~~Al~~Ia~~s~GdlR~alnlLdqai  223 (535)
T PRK08451        182 ISHLKTILEKEG------VSYEPEALEILARSGNGSLRDTLTLLDQAI  223 (535)
T ss_pred             HHHHHHHHHHcC------CCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            999987776321      233456778999999999999988887654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.77  E-value=9.9e-05  Score=67.58  Aligned_cols=59  Identities=12%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             CcEEEEEeccccccccCC---CcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcc
Q psy9384         156 TSYFILVDSIDETHVTNK---KIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMF  216 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~  216 (978)
                      .+.+++||.+|.+.....   ......+.+.|...+.+.... ..++.+++++.... .+...+
T Consensus        58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~-~i~~~l  119 (132)
T PF00004_consen   58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPD-KIDPAL  119 (132)
T ss_dssp             TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGG-GSCHHH
T ss_pred             cceeeeeccchhcccccccccccccccccceeeecccccccc-cccceeEEeeCChh-hCCHhH
Confidence            368999999999976531   111122445555555544321 24578888887743 355443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.76  E-value=0.00013  Score=74.01  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             CCccc-cc-ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           9 SKKFF-CR-EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         9 ~~~f~-~r-~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -+.|. |+ +.+...+++|....     ...+.++|+|+||+|||+|+..+..++
T Consensus        17 ~d~f~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         17 FDNFVAGENAELVARLRELAAGP-----VADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             hcccccCCcHHHHHHHHHHHhcc-----CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45566 33 45556778887632     145689999999999999999998543

>KOG3609|consensus

Probab=97.74  E-value=7.9e-05  Score=83.66  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=102.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccC--CCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEA--LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG  422 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g  422 (978)
                      -....|+..|+...|+..++....  .++|..|.-|+++|+.|+.+-+.+++++|++++...       ..+|.+|+..|
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~   99 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence            346789999999999999987555  678889999999999999999999999999987654       35899999999


Q ss_pred             CHHHHHHHHhCCCCC----------CcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcc
Q psy9384         423 HSAVVKLLLQSGADV----------NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA  481 (978)
Q Consensus       423 ~~~iv~~Ll~~g~~~----------~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~  481 (978)
                      ..++|+.++.+-...          ...-..+.||+.+||..+++||         +++|+++|+.+..
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi---------l~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI---------LQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHH---------HHHHHHcCCCCCC
Confidence            999999999874322          1222346799999999999999         9999999987653

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.74  E-value=0.00024  Score=79.56  Aligned_cols=210  Identities=13%  Similarity=0.107  Sum_probs=106.2

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS   91 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~   91 (978)
                      .+|-+-+.+.+..|+...+     -...+.|+|++|+|||+++..+...+......     ....+..--|.        
T Consensus        18 VIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~-----~~~g~~~~PCG--------   79 (700)
T PRK12323         18 LVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGAD-----GEGGITAQPCG--------   79 (700)
T ss_pred             HcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcc-----ccccCCCCCCc--------
Confidence            3455556667889988642     34567889999999999999998665321000     00000000010        


Q ss_pred             HHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          92 VQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        92 ~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                          -+.-++++.. .++++.+    + .. .  +        ..-.+.+++++...... ....+.-++|||-.|....
T Consensus        80 ----~C~sC~~I~aG~hpDviE----I-dA-a--s--------~~gVDdIReLie~~~~~-P~~gr~KViIIDEah~Ls~  138 (700)
T PRK12323         80 ----QCRACTEIDAGRFVDYIE----M-DA-A--S--------NRGVDEMAQLLDKAVYA-PTAGRFKVYMIDEVHMLTN  138 (700)
T ss_pred             ----ccHHHHHHHcCCCCcceE----e-cc-c--c--------cCCHHHHHHHHHHHHhc-hhcCCceEEEEEChHhcCH
Confidence                0111222222 1122111    0 00 0  0        00012333333322211 1123345888998888864


Q ss_pred             cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384         171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL  250 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~  250 (978)
                      +.        ...|.+.+.    .-|.++++|+++......+.-..+.+..+.+..+..    ++|..++...+...   
T Consensus       139 ~A--------aNALLKTLE----EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~----eei~~~L~~Il~~E---  199 (700)
T PRK12323        139 HA--------FNAMLKTLE----EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP----GHIVSHLDAILGEE---  199 (700)
T ss_pred             HH--------HHHHHHhhc----cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCCh----HHHHHHHHHHHHHc---
Confidence            31        122333332    334566777766544332333334566677755444    67777777655421   


Q ss_pred             HhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384         251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG  282 (978)
Q Consensus       251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~  282 (978)
                         ......+..+.|.+.++|.+.-+-..++.
T Consensus       200 ---gi~~d~eAL~~IA~~A~Gs~RdALsLLdQ  228 (700)
T PRK12323        200 ---GIAHEVNALRLLAQAAQGSMRDALSLTDQ  228 (700)
T ss_pred             ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence               11233456688899999998877665554

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.72  E-value=0.00035  Score=77.43  Aligned_cols=45  Identities=27%  Similarity=0.369  Sum_probs=36.8

Q ss_pred             CcccccccchHH---HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          10 KKFFCREWAFVK---LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        10 ~~f~~r~w~~~~---~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..|+|++.++..   +..|+.+.      ...-+.|+|+||+|||+|+..+...
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~   59 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA   59 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence            458899999876   89999864      3345788999999999999999754

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.69  E-value=0.00039  Score=78.78  Aligned_cols=207  Identities=14%  Similarity=0.085  Sum_probs=106.7

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .+.|-+-+...+..|+...+     -...+.++|+||+|||+++..+...+.....       ...-   -|.       
T Consensus        17 divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-------~~~~---pcg-------   74 (527)
T PRK14969         17 ELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETG-------VTAT---PCG-------   74 (527)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-------CCCC---CCC-------
Confidence            34566777778899998642     3456789999999999999999866532100       0000   010       


Q ss_pred             CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .     +.-+.++.. ..+++.+.     ..   ..        ....+.+++++... .......+.-++|||-.|...
T Consensus        75 ~-----C~~C~~i~~~~~~d~~ei-----~~---~~--------~~~vd~ir~l~~~~-~~~p~~~~~kVvIIDEad~ls  132 (527)
T PRK14969         75 V-----CSACLEIDSGRFVDLIEV-----DA---AS--------NTQVDAMRELLDNA-QYAPTRGRFKVYIIDEVHMLS  132 (527)
T ss_pred             C-----CHHHHHHhcCCCCceeEe-----ec---cc--------cCCHHHHHHHHHHH-hhCcccCCceEEEEcCcccCC
Confidence            0     011122221 11211110     00   00        00012333333221 111112334588899988876


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      .+.        ...|.+.+.    ..|..+.+|+++.....-+....+.+..+.+..+.    ..+|..|+...+...  
T Consensus       133 ~~a--------~naLLK~LE----epp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~----~~~i~~~L~~il~~e--  194 (527)
T PRK14969        133 KSA--------FNAMLKTLE----EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMP----PPLIVSHLQHILEQE--  194 (527)
T ss_pred             HHH--------HHHHHHHHh----CCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCC----HHHHHHHHHHHHHHc--
Confidence            431        123334443    34456666666633221121223345556665443    378998988777522  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                          .....++..+.|++.++|....+-..++.+
T Consensus       195 ----gi~~~~~al~~la~~s~Gslr~al~lldqa  224 (527)
T PRK14969        195 ----NIPFDATALQLLARAAAGSMRDALSLLDQA  224 (527)
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                122334566788889999887777666654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.69  E-value=0.00073  Score=72.53  Aligned_cols=45  Identities=18%  Similarity=0.127  Sum_probs=34.6

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|.+-+.+.+..|+...+     -..++.++|+||+|||+++..+...
T Consensus        22 ~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~   66 (316)
T PHA02544         22 ECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE   66 (316)
T ss_pred             HhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence            34566666678899998532     3467777999999999999999754

>PRK09087 hypothetical protein; Validated

Probab=97.69  E-value=0.0005  Score=68.72  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc-------cchhhcccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS-------KSIKKMFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~-------~~i~~~~~~~~~i~l~~~~~~~  231 (978)
                      .++||.+|-....     ...+...+..+...       +..++++++.++       ++++.++.....+++...+   
T Consensus        90 ~l~iDDi~~~~~~-----~~~lf~l~n~~~~~-------g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd---  154 (226)
T PRK09087         90 PVLIEDIDAGGFD-----ETGLFHLINSVRQA-------GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD---  154 (226)
T ss_pred             eEEEECCCCCCCC-----HHHHHHHHHHHHhC-------CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCC---
Confidence            6778988875321     22233333333321       235777776433       3455555555666775443   


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .+++..++..+....      .-...+++.+-|++++.|.+.=+.-+++.|.
T Consensus       155 -~e~~~~iL~~~~~~~------~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~  200 (226)
T PRK09087        155 -DALLSQVIFKLFADR------QLYVDPHVVYYLVSRMERSLFAAQTIVDRLD  200 (226)
T ss_pred             -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence             478888888777631      2346678899999999999887776666664

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.69  E-value=0.00033  Score=78.74  Aligned_cols=205  Identities=14%  Similarity=0.059  Sum_probs=104.6

Q ss_pred             cccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCH
Q psy9384          13 FCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSV   92 (978)
Q Consensus        13 ~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~   92 (978)
                      +|=+-+.+.+..|+...+     -...+.++|+||+|||+++..+...+-....          ...--|.       . 
T Consensus        19 vGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~----------~~~~pCg-------~-   75 (509)
T PRK14958         19 IGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKG----------VSANPCN-------D-   75 (509)
T ss_pred             cCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCC----------CCcccCC-------C-
Confidence            455555567889998642     3456889999999999999999866532100          0000011       0 


Q ss_pred             HHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccccc
Q psy9384          93 QNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVT  171 (978)
Q Consensus        93 ~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~  171 (978)
                          +..+.++.. .+|++.+.     . .  .+        ....+.+++++...- ......+.-++|||..|....+
T Consensus        76 ----C~~C~~i~~g~~~d~~ei-----d-a--as--------~~~v~~iR~l~~~~~-~~p~~~~~kV~iIDE~~~ls~~  134 (509)
T PRK14958         76 ----CENCREIDEGRFPDLFEV-----D-A--AS--------RTKVEDTRELLDNIP-YAPTKGRFKVYLIDEVHMLSGH  134 (509)
T ss_pred             ----CHHHHHHhcCCCceEEEE-----c-c--cc--------cCCHHHHHHHHHHHh-hccccCCcEEEEEEChHhcCHH
Confidence                111222211 11211110     0 0  00        000122333222211 1111123346778887776532


Q ss_pred             CCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHH
Q psy9384         172 NKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLR  251 (978)
Q Consensus       172 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~  251 (978)
                      .        ...|.+.+.    ..|+++++|+++.....-+....+.+..+++..+.    ..+|..++...+....   
T Consensus       135 a--------~naLLk~LE----epp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~----~~~i~~~l~~il~~eg---  195 (509)
T PRK14958        135 S--------FNALLKTLE----EPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLP----PLQIAAHCQHLLKEEN---  195 (509)
T ss_pred             H--------HHHHHHHHh----ccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCC----HHHHHHHHHHHHHHcC---
Confidence            1        223444444    34567777776643222222333345556665444    3788888887776321   


Q ss_pred             hhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         252 VHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       252 ~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                         ....++..+.+++.++|...-+...++.+
T Consensus       196 ---i~~~~~al~~ia~~s~GslR~al~lLdq~  224 (509)
T PRK14958        196 ---VEFENAALDLLARAANGSVRDALSLLDQS  224 (509)
T ss_pred             ---CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence               22334567788899999988777777554

>PRK06893 DNA replication initiation factor; Validated

Probab=97.68  E-value=0.00021  Score=72.03  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=59.9

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc-------chhhcccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK-------SIKKMFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~-------~i~~~~~~~~~i~l~~~~~~~  231 (978)
                      +++||-+|-.....  ...    ..+.+++......  ....+++++...+.       ++..++.....+.+...+   
T Consensus        94 lLilDDi~~~~~~~--~~~----~~l~~l~n~~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd---  162 (229)
T PRK06893         94 LVCLDDLQAVIGNE--EWE----LAIFDLFNRIKEQ--GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLT---  162 (229)
T ss_pred             EEEEeChhhhcCCh--HHH----HHHHHHHHHHHHc--CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCC---
Confidence            78888888764221  101    1233444333211  11123445544332       334443333345554333   


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .++....++.+....      .-...+++.+-|++++.|.+.-+.-+++.|.
T Consensus       163 -~e~~~~iL~~~a~~~------~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  208 (229)
T PRK06893        163 -DEQKIIVLQRNAYQR------GIELSDEVANFLLKRLDRDMHTLFDALDLLD  208 (229)
T ss_pred             -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence             367777776555411      2345678899999999999998888888774

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.67  E-value=0.00037  Score=79.94  Aligned_cols=204  Identities=11%  Similarity=0.121  Sum_probs=107.1

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS   91 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~   91 (978)
                      ..|-+.+.+.++.|+...+     -...+.++|+||+|||+++..+...+-.                   .........
T Consensus        20 IiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC-------------------~~~~~~~~p   75 (725)
T PRK07133         20 IVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNC-------------------SHKTDLLEP   75 (725)
T ss_pred             hcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcc-------------------cccCCCCCc
Confidence            4566667778999998642     3466789999999999999999855432                   110000000


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccccc
Q psy9384          92 VQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVT  171 (978)
Q Consensus        92 ~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~  171 (978)
                      +..+ ++    .....+.+.+.     ..   .+        ....+.+++++.. +.......+.-++|||-.|-...+
T Consensus        76 C~~C-~~----~~~~~~Dviei-----da---as--------n~~vd~IReLie~-~~~~P~~g~~KV~IIDEa~~LT~~  133 (725)
T PRK07133         76 CQEC-IE----NVNNSLDIIEM-----DA---AS--------NNGVDEIRELIEN-VKNLPTQSKYKIYIIDEVHMLSKS  133 (725)
T ss_pred             hhHH-HH----hhcCCCcEEEE-----ec---cc--------cCCHHHHHHHHHH-HHhchhcCCCEEEEEEChhhCCHH
Confidence            0000 01    01122221100     00   00        0001223333222 222222234457788887776532


Q ss_pred             CCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-hcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384         172 NKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL  250 (978)
Q Consensus       172 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~  250 (978)
                              -...|.+.+.    ..|+.+.+|+++.... .+. ...+.+..+++..+..    .+|..++...+....  
T Consensus       134 --------A~NALLKtLE----EPP~~tifILaTte~~-KLl~TI~SRcq~ieF~~L~~----eeI~~~L~~il~keg--  194 (725)
T PRK07133        134 --------AFNALLKTLE----EPPKHVIFILATTEVH-KIPLTILSRVQRFNFRRISE----DEIVSRLEFILEKEN--  194 (725)
T ss_pred             --------HHHHHHHHhh----cCCCceEEEEEcCChh-hhhHHHHhhceeEEccCCCH----HHHHHHHHHHHHHcC--
Confidence                    1223444443    2344556665553322 233 2334455667654443    789989887665321  


Q ss_pred             HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          .....+..+.++..++|....|...++.+.
T Consensus       195 ----I~id~eAl~~LA~lS~GslR~AlslLekl~  224 (725)
T PRK07133        195 ----ISYEKNALKLIAKLSSGSLRDALSIAEQVS  224 (725)
T ss_pred             ----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                223345678899999999999888887764

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.67  E-value=0.00084  Score=74.67  Aligned_cols=105  Identities=8%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhh
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~  234 (978)
                      ..-++|||-.|....+.        ...|...+.    ..|..+.+++++..+. .+.. ..+.+..+.+.....    .
T Consensus       117 ~~kVvIIDE~h~Lt~~a--------~~~LLk~LE----~p~~~vv~Ilattn~~-kl~~~L~SR~~vv~f~~l~~----~  179 (472)
T PRK14962        117 KYKVYIIDEVHMLTKEA--------FNALLKTLE----EPPSHVVFVLATTNLE-KVPPTIISRCQVIEFRNISD----E  179 (472)
T ss_pred             CeEEEEEEChHHhHHHH--------HHHHHHHHH----hCCCcEEEEEEeCChH-hhhHHHhcCcEEEEECCccH----H
Confidence            34588898888775321        122333333    2334555555443222 2333 333455566654443    6


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                      |+..++...+...      .....++..+.|+++++|...-+-..++.+
T Consensus       180 el~~~L~~i~~~e------gi~i~~eal~~Ia~~s~GdlR~aln~Le~l  222 (472)
T PRK14962        180 LIIKRLQEVAEAE------GIEIDREALSFIAKRASGGLRDALTMLEQV  222 (472)
T ss_pred             HHHHHHHHHHHHc------CCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            7888887766521      123456678889999999987766555554

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00098  Score=71.42  Aligned_cols=212  Identities=13%  Similarity=0.147  Sum_probs=117.7

Q ss_pred             cccccccchHH----HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384          11 KFFCREWAFVK----LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD   86 (978)
Q Consensus        11 ~f~~r~w~~~~----~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~   86 (978)
                      .+.+|+--+++    +..|+.+..     .. -+.|+|+||+|||+.+..+.+++..++       +...+.|--|.   
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~~~~-----p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~-------~~~~~~yINc~---   81 (366)
T COG1474          18 ELPHREEEINQLASFLAPALRGER-----PS-NIIIYGPTGTGKTATVKFVMEELEESS-------ANVEVVYINCL---   81 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhcCCC-----Cc-cEEEECCCCCCHhHHHHHHHHHHHhhh-------ccCceEEEeee---
Confidence            36677665654    567777642     22 288899999999999999998876532       12225666655   


Q ss_pred             CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384          87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID  166 (978)
Q Consensus        87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD  166 (978)
                       .-.++..++..|+.++. ..|.             .+. .     .....+.+++.+.    .   ....+++|+|-+|
T Consensus        82 -~~~t~~~i~~~i~~~~~-~~p~-------------~g~-~-----~~~~~~~l~~~~~----~---~~~~~IvvLDEid  133 (366)
T COG1474          82 -ELRTPYQVLSKILNKLG-KVPL-------------TGD-S-----SLEILKRLYDNLS----K---KGKTVIVILDEVD  133 (366)
T ss_pred             -eCCCHHHHHHHHHHHcC-CCCC-------------CCC-c-----hHHHHHHHHHHHH----h---cCCeEEEEEcchh
Confidence             44588889999999887 2222             000 0     0111122222222    2   4677999999999


Q ss_pred             cccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc------cchhhcccCccccccccccchhhhhHHHHHH
Q psy9384         167 ETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS------KSIKKMFLGFHKLSLDDLRKSHVIRDMQQYI  240 (978)
Q Consensus       167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~------~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi  240 (978)
                      -.....+        +.|-.|++..... ..++-++..+.-..      +-+...+.+. .|.......    +.|...+
T Consensus       134 ~L~~~~~--------~~LY~L~r~~~~~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a----~el~~Il  199 (366)
T COG1474         134 ALVDKDG--------EVLYSLLRAPGEN-KVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTA----EELYDIL  199 (366)
T ss_pred             hhccccc--------hHHHHHHhhcccc-ceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCH----HHHHHHH
Confidence            8864321        3455555543221 22333333332221      1122233222 245544443    6677777


Q ss_pred             HHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         241 LLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       241 ~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..|+..... .....+..-+++..++....|.   |+.+++.++
T Consensus       200 ~~R~~~~~~-~~~~~~~vl~lia~~~a~~~GD---AR~aidilr  239 (366)
T COG1474         200 RERVEEGFS-AGVIDDDVLKLIAALVAAESGD---ARKAIDILR  239 (366)
T ss_pred             HHHHHhhcc-CCCcCccHHHHHHHHHHHcCcc---HHHHHHHHH
Confidence            777764311 1122344556677777777775   666666665

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.65  E-value=0.00039  Score=74.67  Aligned_cols=55  Identities=27%  Similarity=0.319  Sum_probs=39.3

Q ss_pred             CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      |..-..|.||+-..+.+..++..... .....+.+.|+|+||+|||+|+..+...+
T Consensus        21 P~~~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l   75 (328)
T PRK00080         21 PKSLDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM   75 (328)
T ss_pred             cCCHHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence            33445689998888888777764210 01134568899999999999999998654

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.63  E-value=0.00064  Score=77.75  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=61.9

Q ss_pred             EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHH
Q psy9384         158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDM  236 (978)
Q Consensus       158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di  236 (978)
                      =++|||-.|....+.        ...|.+.+.    .-|+.+.+|+++.... .+.. ..+.+..+++..+.    .++|
T Consensus       129 KVvIIdEad~Lt~~a--------~naLLK~LE----ePp~~tv~IL~t~~~~-kLl~TI~SRc~~vef~~l~----~~ei  191 (620)
T PRK14954        129 RVYIIDEVHMLSTAA--------FNAFLKTLE----EPPPHAIFIFATTELH-KIPATIASRCQRFNFKRIP----LDEI  191 (620)
T ss_pred             EEEEEeChhhcCHHH--------HHHHHHHHh----CCCCCeEEEEEeCChh-hhhHHHHhhceEEecCCCC----HHHH
Confidence            477888888876321        223444444    3344555555553322 2332 23345556665443    3789


Q ss_pred             HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..|+...+...      .....++..+.|+++++|....+...++.+.
T Consensus       192 ~~~L~~i~~~e------gi~I~~eal~~La~~s~Gdlr~al~eLeKL~  233 (620)
T PRK14954        192 QSQLQMICRAE------GIQIDADALQLIARKAQGSMRDAQSILDQVI  233 (620)
T ss_pred             HHHHHHHHHHc------CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99988766522      1234566778899999999888887777654

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.63  E-value=0.00069  Score=74.24  Aligned_cols=207  Identities=13%  Similarity=0.136  Sum_probs=105.4

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      ...|.+-+.+.+++|+...+     -...+.++|+||+|||+++..+...+.....       ...-++..|..      
T Consensus        15 ~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~-------~~~~~c~~c~~------   76 (355)
T TIGR02397        15 DVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNG-------PDGEPCNECES------   76 (355)
T ss_pred             hccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCCCHH------
Confidence            45677777788999998632     3457889999999999999999877643210       00011112211      


Q ss_pred             CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                       .        .++.. .++.+...     ...   .        ......+.+++.. +.......++-++|||-.|...
T Consensus        77 -c--------~~~~~~~~~~~~~~-----~~~---~--------~~~~~~~~~l~~~-~~~~p~~~~~~vviidea~~l~  130 (355)
T TIGR02397        77 -C--------KEINSGSSLDVIEI-----DAA---S--------NNGVDDIREILDN-VKYAPSSGKYKVYIIDEVHMLS  130 (355)
T ss_pred             -H--------HHHhcCCCCCEEEe-----ecc---c--------cCCHHHHHHHHHH-HhcCcccCCceEEEEeChhhcC
Confidence             0        11111 11111000     000   0        0000112222221 1111112234477888877775


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcc-cCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMF-LGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~-~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      ...        ...+.+.+.    ..|+.+.+|+++.... .+...+ +.+..+++...    ...++..|+..++.+. 
T Consensus       131 ~~~--------~~~Ll~~le----~~~~~~~lIl~~~~~~-~l~~~l~sr~~~~~~~~~----~~~~l~~~l~~~~~~~-  192 (355)
T TIGR02397       131 KSA--------FNALLKTLE----EPPEHVVFILATTEPH-KIPATILSRCQRFDFKRI----PLEDIVERLKKILDKE-  192 (355)
T ss_pred             HHH--------HHHHHHHHh----CCccceeEEEEeCCHH-HHHHHHHhheeEEEcCCC----CHHHHHHHHHHHHHHc-
Confidence            321        122333333    3345566666654322 122222 22334455322    3478888888877632 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                           .....++..+.+++.++|.+..+.-.++.+.
T Consensus       193 -----g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~  223 (355)
T TIGR02397       193 -----GIKIEDEALELIARAADGSLRDALSLLDQLI  223 (355)
T ss_pred             -----CCCCCHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence                 1234457788899999999888877776654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.62  E-value=0.00072  Score=80.08  Aligned_cols=210  Identities=13%  Similarity=0.041  Sum_probs=107.7

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .++|.+.+.+.++.|+...+     -...+.|+|.+|+|||+++..+...|.-                   .....  .
T Consensus        16 eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C-------------------~~~~~--~   69 (824)
T PRK07764         16 EVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNC-------------------VEGPT--S   69 (824)
T ss_pred             HhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCc-------------------ccCCC--C
Confidence            34577777778999998642     4467899999999999999999866532                   11000  0


Q ss_pred             CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                      .+-+..+| ++++....+..++.+ .+ ..   ...        ...+.++++.......-. ..+.-+||||-.|.+..
T Consensus        70 ~pCg~C~s-C~~~~~g~~~~~dv~-ei-da---as~--------~~Vd~iR~l~~~~~~~p~-~~~~KV~IIDEad~lt~  134 (824)
T PRK07764         70 TPCGECDS-CVALAPGGPGSLDVT-EI-DA---ASH--------GGVDDARELRERAFFAPA-ESRYKIFIIDEAHMVTP  134 (824)
T ss_pred             CCCcccHH-HHHHHcCCCCCCcEE-Ee-cc---ccc--------CCHHHHHHHHHHHHhchh-cCCceEEEEechhhcCH
Confidence            00000111 333332211111100 00 00   000        001122222111111111 12223667777777753


Q ss_pred             cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      ..        ...|.+++.    ..|.++.+|+++..... |.. ..+.+..+.+..+.    .++|..|+...+...  
T Consensus       135 ~a--------~NaLLK~LE----EpP~~~~fIl~tt~~~k-Ll~TIrSRc~~v~F~~l~----~~~l~~~L~~il~~E--  195 (824)
T PRK07764        135 QG--------FNALLKIVE----EPPEHLKFIFATTEPDK-VIGTIRSRTHHYPFRLVP----PEVMRGYLERICAQE--  195 (824)
T ss_pred             HH--------HHHHHHHHh----CCCCCeEEEEEeCChhh-hhHHHHhheeEEEeeCCC----HHHHHHHHHHHHHHc--
Confidence            31        234555555    44556677766633322 332 22344556664433    478999988766522  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          ......+....|+..++|....+...++.|.
T Consensus       196 ----Gv~id~eal~lLa~~sgGdlR~Al~eLEKLi  226 (824)
T PRK07764        196 ----GVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL  226 (824)
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                1223445667888999998887777777765

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.61  E-value=0.00097  Score=66.43  Aligned_cols=172  Identities=17%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHHh
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFST  116 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~  116 (978)
                      ...++|+|++|+|||.|+..+.....       +..+...|.|+          +...+.+.++..+-...   .+    
T Consensus        34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~-------~~~~~~~v~y~----------~~~~f~~~~~~~~~~~~---~~----   89 (219)
T PF00308_consen   34 YNPLFLYGPSGLGKTHLLQAIANEAQ-------KQHPGKRVVYL----------SAEEFIREFADALRDGE---IE----   89 (219)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHH-------HHCTTS-EEEE----------EHHHHHHHHHHHHHTTS---HH----
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH-------hccccccceee----------cHHHHHHHHHHHHHccc---ch----
Confidence            34689999999999999999985532       11124445543          33344444444443321   11    


Q ss_pred             hhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCC
Q psy9384         117 IVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFP  196 (978)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  196 (978)
                                            .+.+-+.    .    .  =+++||.+|.....  +.....+...+..+...      
T Consensus        90 ----------------------~~~~~~~----~----~--DlL~iDDi~~l~~~--~~~q~~lf~l~n~~~~~------  129 (219)
T PF00308_consen   90 ----------------------EFKDRLR----S----A--DLLIIDDIQFLAGK--QRTQEELFHLFNRLIES------  129 (219)
T ss_dssp             ----------------------HHHHHHC----T----S--SEEEEETGGGGTTH--HHHHHHHHHHHHHHHHT------
T ss_pred             ----------------------hhhhhhh----c----C--CEEEEecchhhcCc--hHHHHHHHHHHHHHHhh------
Confidence                                  1111111    1    1  28999999998642  21233334444443332      


Q ss_pred             Cceeeeeeecccccchh-------hcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhc
Q psy9384         197 PWLFLFCTVRRQSKSIK-------KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKS  269 (978)
Q Consensus       197 ~~~~~~~~sr~~~~~i~-------~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a  269 (978)
                       +.++|++|+..+..+.       .+|.....+.+...    ..++....+..+...      ..-...+++.+-|.++.
T Consensus       130 -~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~p----d~~~r~~il~~~a~~------~~~~l~~~v~~~l~~~~  198 (219)
T PF00308_consen  130 -GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPP----DDEDRRRILQKKAKE------RGIELPEEVIEYLARRF  198 (219)
T ss_dssp             -TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--------HHHHHHHHHHHHHH------TT--S-HHHHHHHHHHT
T ss_pred             -CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCC----CHHHHHHHHHHHHHH------hCCCCcHHHHHHHHHhh
Confidence             2367888866655443       22223334555432    235666666665552      11235567777777777


Q ss_pred             hhhHHHHHHHHhhh
Q psy9384         270 NGCFLYLERVLDGI  283 (978)
Q Consensus       270 ~g~flw~~~~~~~l  283 (978)
                      .+...=+.-+++.|
T Consensus       199 ~~~~r~L~~~l~~l  212 (219)
T PF00308_consen  199 RRDVRELEGALNRL  212 (219)
T ss_dssp             TSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            77666555555554

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.60  E-value=0.00069  Score=75.59  Aligned_cols=106  Identities=14%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhhh
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~  234 (978)
                      ..-++|||-.|....+.        ...|.+.+.    ..|+.+.+|+.+.... .+... .+.+..+++..+.    ..
T Consensus       128 ~~KVvIIDEa~~Ls~~a--------~naLLk~LE----epp~~~vfI~aTte~~-kI~~tI~SRc~~~ef~~ls----~~  190 (507)
T PRK06645        128 KHKIFIIDEVHMLSKGA--------FNALLKTLE----EPPPHIIFIFATTEVQ-KIPATIISRCQRYDLRRLS----FE  190 (507)
T ss_pred             CcEEEEEEChhhcCHHH--------HHHHHHHHh----hcCCCEEEEEEeCChH-HhhHHHHhcceEEEccCCC----HH
Confidence            34578888888775321        223333333    3345666665553322 24333 2344556665444    37


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ++..++...+...      .....++..+.|+++++|.+.-+-..++.+.
T Consensus       191 el~~~L~~i~~~e------gi~ie~eAL~~Ia~~s~GslR~al~~Ldkai  234 (507)
T PRK06645        191 EIFKLLEYITKQE------NLKTDIEALRIIAYKSEGSARDAVSILDQAA  234 (507)
T ss_pred             HHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999998888632      1233456678899999999888777776653

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.58  E-value=0.001  Score=74.69  Aligned_cols=105  Identities=11%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhH
Q psy9384         157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      .-++|||-.|.....           .+..++.... ..+..+.+|+++.... .+.. ..+.+..+++....    ..|
T Consensus       117 ~kVVIIDEad~ls~~-----------a~naLLk~LE-ep~~~t~~Il~t~~~~-kl~~~I~SRc~~~~f~~ls----~~e  179 (504)
T PRK14963        117 RKVYILDEAHMMSKS-----------AFNALLKTLE-EPPEHVIFILATTEPE-KMPPTILSRTQHFRFRRLT----EEE  179 (504)
T ss_pred             CeEEEEECccccCHH-----------HHHHHHHHHH-hCCCCEEEEEEcCChh-hCChHHhcceEEEEecCCC----HHH
Confidence            346777776654321           2223333221 2234455555553322 2332 22345556665444    479


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      +..|+...+...      .....++..+.|++.++|...-+...++.+.
T Consensus       180 l~~~L~~i~~~e------gi~i~~~Al~~ia~~s~GdlR~aln~Lekl~  222 (504)
T PRK14963        180 IAGKLRRLLEAE------GREAEPEALQLVARLADGAMRDAESLLERLL  222 (504)
T ss_pred             HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999998877632      1223456778999999999888877777664

>KOG0521|consensus

Probab=97.57  E-value=7.5e-05  Score=86.82  Aligned_cols=70  Identities=21%  Similarity=0.275  Sum_probs=36.4

Q ss_pred             hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHH
Q psy9384         860 VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRL  934 (978)
Q Consensus       860 ~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~  934 (978)
                      ++++|+++|+++|..+ ..|    .||||.+...|+...+..|+++|++++..+..|.+++++|....+-+++-+
T Consensus       671 ~~e~ll~~ga~vn~~d-~~g----~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  671 AVELLLQNGADVNALD-SKG----RTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLL  740 (785)
T ss_pred             HHHHHHhcCCcchhhh-ccC----CCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHHH
Confidence            4444444444444444 444    555555555555555555555555555555555555555555444444443

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=97.57  E-value=0.00036  Score=75.44  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=47.1

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC-ccCHHHHHHHH
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA-TFSVQNFIQSL   99 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~-~~~~~~~l~sl   99 (978)
                      .+.+-+...   ....+-+..|.|+=|||||+++..+.+.+....       ....+..+|-...... ..-...++..|
T Consensus         7 ~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~-------~~~~~~i~fn~w~~~~~~~~~~~~~~~l   76 (325)
T PF07693_consen    7 ALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDN-------KEKYIFIYFNAWEYDGEDDLWASFLEEL   76 (325)
T ss_pred             HHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-------ccceeeEEEccccCCCcchHHHHHHHHH
Confidence            344555543   224667899999999999999999998876420       0122222232222332 44456777777


Q ss_pred             HHHHhcCC
Q psy9384         100 VEQFSSSE  107 (978)
Q Consensus       100 ~~QL~~~~  107 (978)
                      ..||....
T Consensus        77 ~~~l~~~~   84 (325)
T PF07693_consen   77 FDQLEKHF   84 (325)
T ss_pred             HHHHHHhc
Confidence            77777643

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.57  E-value=0.00049  Score=73.42  Aligned_cols=217  Identities=14%  Similarity=0.132  Sum_probs=106.7

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ...+|-+-+.+.+..-+.+.+     -...+.|+|++|+|||+++..+...+.....      +...... +   ..+..
T Consensus        23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~------~~~~~~~-~---~~~~~   87 (351)
T PRK09112         23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPD------PAEAPET-L---ADPDP   87 (351)
T ss_pred             hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCc------cccCccc-c---CCCCC
Confidence            344555555566777666431     3346888999999999999999977653110      0000000 0   01110


Q ss_pred             cCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchh-hHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384          90 FSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDES-IKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE  167 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE  167 (978)
                      .      +..++++.. .+|++....+..-.... .....        ..++.+++.. .+.......+.-++|||-.|.
T Consensus        88 ~------c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I--------~vd~iR~l~~-~l~~~~~~g~~rVviIDeAd~  152 (351)
T PRK09112         88 A------SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI--------TVDEIRRVGH-FLSQTSGDGNWRIVIIDPADD  152 (351)
T ss_pred             C------CHHHHHHHcCCCCCEEEeecccccccccccccC--------CHHHHHHHHH-HhhhccccCCceEEEEEchhh
Confidence            1      123445543 34443221111000000 00000        0122332222 222222334556899999999


Q ss_pred             ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         168 THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                      .+...        ...|.+.+..    .|.+..+++++..+..-+....+.+..+.+.....    +++..|+.+.-.. 
T Consensus       153 l~~~a--------anaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~----~~~~~~L~~~~~~-  215 (351)
T PRK09112        153 MNRNA--------ANAILKTLEE----PPARALFILISHSSGRLLPTIRSRCQPISLKPLDD----DELKKALSHLGSS-  215 (351)
T ss_pred             cCHHH--------HHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhccEEEecCCCH----HHHHHHHHHhhcc-
Confidence            87542        1234444442    33445555555433222222223455667755444    7888888862110 


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHH
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVL  280 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~  280 (978)
                             ....++....+.+.++|.+.-|.-.+
T Consensus       216 -------~~~~~~~~~~i~~~s~G~pr~Al~ll  241 (351)
T PRK09112        216 -------QGSDGEITEALLQRSKGSVRKALLLL  241 (351)
T ss_pred             -------cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence                   11224556788899999988775443

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=97.57  E-value=0.00084  Score=72.10  Aligned_cols=222  Identities=13%  Similarity=0.090  Sum_probs=112.7

Q ss_pred             CCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeec--c
Q psy9384           5 TPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHF--C   82 (978)
Q Consensus         5 ~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff--~   82 (978)
                      .|-+....+|-+.+.+.+.+.+.+.+     -..-+.++|++|+||++++-.++..+......      ... ++..  .
T Consensus        14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~------~~~-~~~~~~~   81 (365)
T PRK07471         14 HPRETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPP------GGD-GAVPPPT   81 (365)
T ss_pred             CCCchhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCC------CCC-ccccccc
Confidence            34455567788888888877777532     34568899999999999999998665431100      000 0000  0


Q ss_pred             ccCCCCccCHHHHHHHHHHHHh-cCCCchhHHHHhhhcch-hhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEE
Q psy9384          83 QSYDLATFSVQNFIQSLVEQFS-SSESPFSEAFSTIVEDE-SIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFI  160 (978)
Q Consensus        83 ~~~~~~~~~~~~~l~sl~~QL~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i  160 (978)
                      .-.....       +..++++. ..+|++.......-++. ......        ..++.+++... +.......++.++
T Consensus        82 ~l~~~~~-------c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I--------~VdqiR~l~~~-~~~~~~~~~~kVv  145 (365)
T PRK07471         82 SLAIDPD-------HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVI--------TVDEVRELISF-FGLTAAEGGWRVV  145 (365)
T ss_pred             cccCCCC-------ChHHHHHHccCCCCeEEEecccccccccccccc--------cHHHHHHHHHH-hCcCcccCCCEEE
Confidence            0000000       12333333 24454322111000000 000000        01334433332 2222334556789


Q ss_pred             EEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHH
Q psy9384         161 LVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYI  240 (978)
Q Consensus       161 viDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi  240 (978)
                      |||..|..+...        ...|.+.+.    ..|.+..+|++|........-..+.+..+.+...+    .+++..++
T Consensus       146 iIDead~m~~~a--------anaLLK~LE----epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~----~~~i~~~L  209 (365)
T PRK07471        146 IVDTADEMNANA--------ANALLKVLE----EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLA----PEDVIDAL  209 (365)
T ss_pred             EEechHhcCHHH--------HHHHHHHHh----cCCCCeEEEEEECCchhchHHhhccceEEECCCCC----HHHHHHHH
Confidence            999999987542        224444444    33445556666654433222223445667775444    37888887


Q ss_pred             HHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHH
Q psy9384         241 LLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVL  280 (978)
Q Consensus       241 ~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~  280 (978)
                      .++...          ..++....++..++|+++.|.-.+
T Consensus       210 ~~~~~~----------~~~~~~~~l~~~s~Gsp~~Al~ll  239 (365)
T PRK07471        210 AAAGPD----------LPDDPRAALAALAEGSVGRALRLA  239 (365)
T ss_pred             HHhccc----------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence            765421          111222677889999998775444

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=97.57  E-value=0.00096  Score=76.24  Aligned_cols=212  Identities=12%  Similarity=0.086  Sum_probs=110.2

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      ...|.+.+.+.+..++...+     -..-+.++|++|+|||+++..+...+.......     .....+.-|..      
T Consensus        25 dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~-----~~~~~~~~cg~------   88 (598)
T PRK09111         25 DLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDG-----DGGPTIDLCGV------   88 (598)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccc-----cCCCccccCcc------
Confidence            34566777778888888642     345688899999999999999997764321000     00000111110      


Q ss_pred             CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                            +--++++.. .+|++.+.      ++.  +        ..-.+.++.++.. +.......+.=++|||-.|...
T Consensus        89 ------c~~C~~i~~g~h~Dv~e~------~a~--s--------~~gvd~IReIie~-~~~~P~~a~~KVvIIDEad~Ls  145 (598)
T PRK09111         89 ------GEHCQAIMEGRHVDVLEM------DAA--S--------HTGVDDIREIIES-VRYRPVSARYKVYIIDEVHMLS  145 (598)
T ss_pred             ------cHHHHHHhcCCCCceEEe------ccc--c--------cCCHHHHHHHHHH-HHhchhcCCcEEEEEEChHhCC
Confidence                  011123332 22332110      000  0        0001233333322 1111111233468888888876


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      .+.        ...|.+.+.    ..|+.+++|+++.....-+....+.+..+++..+..    +++..++...+...  
T Consensus       146 ~~a--------~naLLKtLE----ePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~----~el~~~L~~i~~ke--  207 (598)
T PRK09111        146 TAA--------FNALLKTLE----EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEA----DVLAAHLSRIAAKE--  207 (598)
T ss_pred             HHH--------HHHHHHHHH----hCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCH----HHHHHHHHHHHHHc--
Confidence            321        223444444    334566666665322222222333455566654443    78888888776522  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                          ......+..+.|+..++|....+...++.+
T Consensus       208 ----gi~i~~eAl~lIa~~a~Gdlr~al~~Ldkl  237 (598)
T PRK09111        208 ----GVEVEDEALALIARAAEGSVRDGLSLLDQA  237 (598)
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                223445677888999999988887777665

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.56  E-value=0.001  Score=76.50  Aligned_cols=208  Identities=10%  Similarity=0.114  Sum_probs=107.1

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..+.|-+.+.+.+..|+...+     -...+.++|+||+|||+++..+...+-.....   . ..   .+-.|       
T Consensus        16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~---~-~~---~c~~c-------   76 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGL---T-AE---PCNVC-------   76 (576)
T ss_pred             HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC---C-CC---CCCcc-------
Confidence            345677777778999998642     34567889999999999999998665321100   0 00   00000       


Q ss_pred             cCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 FSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                              ..+.++.. ..+++.+.     ...   +        ....+..+.++.. +.......+.=++|||-.|..
T Consensus        77 --------~~c~~i~~g~~~d~~ei-----d~~---s--------~~~v~~ir~l~~~-~~~~p~~~~~KVvIIdev~~L  131 (576)
T PRK14965         77 --------PPCVEITEGRSVDVFEI-----DGA---S--------NTGVDDIRELREN-VKYLPSRSRYKIFIIDEVHML  131 (576)
T ss_pred             --------HHHHHHhcCCCCCeeee-----ecc---C--------ccCHHHHHHHHHH-HHhccccCCceEEEEEChhhC
Confidence                    11111111 11111100     000   0        0000112222211 111111122336778888877


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                      ..+.        ...|.+.+.    ..|+++.+|+++.... .|.. ..+.+..+++..+.    ..+|..++...+.+.
T Consensus       132 t~~a--------~naLLk~LE----epp~~~~fIl~t~~~~-kl~~tI~SRc~~~~f~~l~----~~~i~~~L~~i~~~e  194 (576)
T PRK14965        132 STNA--------FNALLKTLE----EPPPHVKFIFATTEPH-KVPITILSRCQRFDFRRIP----LQKIVDRLRYIADQE  194 (576)
T ss_pred             CHHH--------HHHHHHHHH----cCCCCeEEEEEeCChh-hhhHHHHHhhhhhhcCCCC----HHHHHHHHHHHHHHh
Confidence            6321        223444444    3345666666553322 2332 23345556665443    378888887766522


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                            .....++....|+.+++|....+...++.+.
T Consensus       195 ------gi~i~~~al~~la~~a~G~lr~al~~Ldqli  225 (576)
T PRK14965        195 ------GISISDAALALVARKGDGSMRDSLSTLDQVL  225 (576)
T ss_pred             ------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                  1234456778899999999988887777653

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=97.56  E-value=0.00091  Score=70.85  Aligned_cols=198  Identities=21%  Similarity=0.248  Sum_probs=108.3

Q ss_pred             cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHH-HHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHH
Q psy9384          17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLC-KEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNF   95 (978)
Q Consensus        17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~-~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~   95 (978)
                      -..+.++.||...      .+.+..|+|+.||||+-|+ .++...             +..+.|.=|+.-.. .++-..+
T Consensus         3 e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~-------------r~~vL~IDC~~i~~-ar~D~~~   62 (431)
T PF10443_consen    3 EAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKD-------------RKNVLVIDCDQIVK-ARGDAAF   62 (431)
T ss_pred             hHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhC-------------CCCEEEEEChHhhh-ccChHHH
Confidence            3456789999974      5568999999999999998 666633             33378888885555 5667789


Q ss_pred             HHHHHHHHhcCCCch--hHHHHhhhcchhhHhhcchh-hhhhCHHHHHHHhhhh---hhhcC------------------
Q psy9384          96 IQSLVEQFSSSESPF--SEAFSTIVEDESIKALLKSD-QLLQDSDEVFKKALIL---PLAQI------------------  151 (978)
Q Consensus        96 l~sl~~QL~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~---~l~~~------------------  151 (978)
                      +++++.|+.-. |.+  ...+-.+.+- ..++..... ..-.+...++..+|..   +|+.+                  
T Consensus        63 I~~lA~qvGY~-PvFsw~nSiss~IDL-a~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~  140 (431)
T PF10443_consen   63 IKNLASQVGYF-PVFSWMNSISSFIDL-AVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEED  140 (431)
T ss_pred             HHHHHHhcCCC-cchHHHHHHHHHHHH-HHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchh
Confidence            99999999864 321  1112122111 011100000 0012222333333332   22220                  


Q ss_pred             ---CCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeee--cccccchhhccc--Ccccccc
Q psy9384         152 ---KHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTV--RRQSKSIKKMFL--GFHKLSL  224 (978)
Q Consensus       152 ---~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~s--r~~~~~i~~~~~--~~~~i~l  224 (978)
                         .++..+-+||||+...-...     ..-+-+.|.+........--.  ++|+.|  .-....+.+.+.  .+..|.|
T Consensus       141 yl~~hPe~~PVVVIdnF~~k~~~-----~~~iy~~laeWAa~Lv~~nIA--HVIFlT~dv~~~k~LskaLPn~vf~tI~L  213 (431)
T PF10443_consen  141 YLEAHPERRPVVVIDNFLHKAEE-----NDFIYDKLAEWAASLVQNNIA--HVIFLTDDVSYSKPLSKALPNRVFKTISL  213 (431)
T ss_pred             hhhhCCccCCEEEEcchhccCcc-----cchHHHHHHHHHHHHHhcCcc--EEEEECCCCchhhhHHHhCCCCceeEEee
Confidence               11233569999999764322     222223344444333222222  344444  333334666664  3667777


Q ss_pred             ccccchhhhhHHHHHHHHHhcCc
Q psy9384         225 DDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       225 ~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                      .+...    +--+.||..+|...
T Consensus       214 ~Das~----~~Ak~yV~~~L~~~  232 (431)
T PF10443_consen  214 SDASP----ESAKQYVLSQLDED  232 (431)
T ss_pred             cCCCH----HHHHHHHHHHhccc
Confidence            55443    66789999999754

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>PRK08727 hypothetical protein; Validated

Probab=97.56  E-value=0.0007  Score=68.39  Aligned_cols=107  Identities=12%  Similarity=0.119  Sum_probs=62.1

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccch-------hhcccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSI-------KKMFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i-------~~~~~~~~~i~l~~~~~~~  231 (978)
                      ++|||-+|.....  +...    ..+.+++......   ...+|++|+..+..+       ..++.....+.+...+.  
T Consensus        96 lLiIDDi~~l~~~--~~~~----~~lf~l~n~~~~~---~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~--  164 (233)
T PRK08727         96 LVALDGLESIAGQ--REDE----VALFDFHNRARAA---GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD--  164 (233)
T ss_pred             EEEEeCcccccCC--hHHH----HHHHHHHHHHHHc---CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCH--
Confidence            7889988876532  1111    2333444433211   235788887554433       33333344566654443  


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                        +++..++..+....      .-...+++.+-|++++.|.+.-+.-+++.+.
T Consensus       165 --e~~~~iL~~~a~~~------~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~  209 (233)
T PRK08727        165 --VARAAVLRERAQRR------GLALDEAAIDWLLTHGERELAGLVALLDRLD  209 (233)
T ss_pred             --HHHHHHHHHHHHHc------CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence              67777777654421      1245567889999999999888877777664

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.55  E-value=0.00082  Score=77.73  Aligned_cols=209  Identities=11%  Similarity=0.105  Sum_probs=104.5

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .+.|-+-+.+.+..|+.+.+     -...++|+|+||+|||+++..+...+..                   ....+...
T Consensus        17 eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c-------------------~~~~~~~~   72 (585)
T PRK14950         17 ELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNC-------------------TTNDPKGR   72 (585)
T ss_pred             HhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcC-------------------CCCCCCCC
Confidence            34555666667888888632     3456789999999999999999865431                   11000000


Q ss_pred             CHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .+ + .+..++++... ++++.+.     .. .  ...        ..+.++.++. .+.........-+||||..|...
T Consensus        73 ~c-~-~c~~c~~i~~~~~~d~~~i-----~~-~--~~~--------~vd~ir~ii~-~~~~~p~~~~~kVvIIDEa~~L~  133 (585)
T PRK14950         73 PC-G-TCEMCRAIAEGSAVDVIEM-----DA-A--SHT--------SVDDAREIIE-RVQFRPALARYKVYIIDEVHMLS  133 (585)
T ss_pred             CC-c-cCHHHHHHhcCCCCeEEEE-----ec-c--ccC--------CHHHHHHHHH-HHhhCcccCCeEEEEEeChHhCC
Confidence            00 0 12233333332 1221110     00 0  000        0112222221 11121112344588999988876


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      .+.        ...|.+.+.    ..|..+.+|+++......+....+.+..+.+....    ..++..++.......  
T Consensus       134 ~~a--------~naLLk~LE----epp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~----~~el~~~L~~~a~~e--  195 (585)
T PRK14950        134 TAA--------FNALLKTLE----EPPPHAIFILATTEVHKVPATILSRCQRFDFHRHS----VADMAAHLRKIAAAE--  195 (585)
T ss_pred             HHH--------HHHHHHHHh----cCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCC----HHHHHHHHHHHHHHc--
Confidence            321        223344443    22345555555533221122222334445554333    367777777655421  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          ......+..+.|+..++|....+.-.++.+.
T Consensus       196 ----gl~i~~eal~~La~~s~Gdlr~al~~LekL~  226 (585)
T PRK14950        196 ----GINLEPGALEAIARAATGSMRDAENLLQQLA  226 (585)
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                1223456778899999999888887777664

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.53  E-value=0.00087  Score=77.22  Aligned_cols=209  Identities=14%  Similarity=0.114  Sum_probs=104.7

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS   91 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~   91 (978)
                      ..|.+-+...++.|+...+     -..-+.++|+||+|||+++..+...+...                   ........
T Consensus        18 liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-------------------~~~~~~~~   73 (620)
T PRK14948         18 LVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-------------------NSDKPTPE   73 (620)
T ss_pred             ccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-------------------CcCCCCCC
Confidence            3455555667888988642     23467899999999999999998665321                   00000000


Q ss_pred             HHHHHHHHHHHHhcCC-CchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          92 VQNFIQSLVEQFSSSE-SPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        92 ~~~~l~sl~~QL~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                      +-+ -+..++++.... +++.+.     . ..  .        ....+.+++++... .......+.-++|||-.|.+..
T Consensus        74 ~Cg-~C~~C~~i~~g~h~D~~ei-----~-~~--~--------~~~vd~IReii~~a-~~~p~~~~~KViIIDEad~Lt~  135 (620)
T PRK14948         74 PCG-KCELCRAIAAGNALDVIEI-----D-AA--S--------NTGVDNIRELIERA-QFAPVQARWKVYVIDECHMLST  135 (620)
T ss_pred             CCc-ccHHHHHHhcCCCccEEEE-----e-cc--c--------cCCHHHHHHHHHHH-hhChhcCCceEEEEECccccCH
Confidence            000 133444454321 211110     0 00  0        00012333333221 1111112345888998888763


Q ss_pred             cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384         171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL  250 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~  250 (978)
                      +.        ...|.+.+.    .-|..+.+|+++.....-+....+.+..+++..+.    ..++..++.....+.   
T Consensus       136 ~a--------~naLLK~LE----ePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~----~~ei~~~L~~ia~ke---  196 (620)
T PRK14948        136 AA--------FNALLKTLE----EPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIP----LEAMVQHLSEIAEKE---  196 (620)
T ss_pred             HH--------HHHHHHHHh----cCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCC----HHHHHHHHHHHHHHh---
Confidence            21        223444443    33445555555533222122222334445554333    267777766544421   


Q ss_pred             HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                         ......+....+++.++|....|.-.++.+.
T Consensus       197 ---gi~is~~al~~La~~s~G~lr~A~~lLekls  227 (620)
T PRK14948        197 ---SIEIEPEALTLVAQRSQGGLRDAESLLDQLS  227 (620)
T ss_pred             ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence               1223345678899999999888877777653

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.48  E-value=0.0016  Score=73.99  Aligned_cols=211  Identities=13%  Similarity=0.061  Sum_probs=107.3

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .++|-+.+.+.++.|+.+.+     -...+.++|++|+|||+++..++..+.....       ...-.+-.|        
T Consensus        14 eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-------~~~~pCg~C--------   73 (584)
T PRK14952         14 EVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQG-------PTATPCGVC--------   73 (584)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccC-------CCCCccccc--------
Confidence            45677777788999998642     3456889999999999999999866542100       000000011        


Q ss_pred             CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                             .-+.++.......++.+ .+ ......       .    .+..+++.... .........-++|||-.|-...
T Consensus        74 -------~~C~~i~~~~~~~~dvi-ei-daas~~-------g----vd~iRel~~~~-~~~P~~~~~KVvIIDEah~Lt~  132 (584)
T PRK14952         74 -------ESCVALAPNGPGSIDVV-EL-DAASHG-------G----VDDTRELRDRA-FYAPAQSRYRIFIVDEAHMVTT  132 (584)
T ss_pred             -------HHHHHhhcccCCCceEE-Ee-cccccc-------C----HHHHHHHHHHH-HhhhhcCCceEEEEECCCcCCH
Confidence                   01222222111000000 00 000000       0    01111111111 1111112334778888777753


Q ss_pred             cCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHH
Q psy9384         171 TNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESL  250 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~  250 (978)
                      +.        ...|.+.+.    .-|.++.+|+++......+....+.+..+++..+..    .||..|+...+...   
T Consensus       133 ~A--------~NALLK~LE----Epp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~----~~i~~~L~~i~~~e---  193 (584)
T PRK14952        133 AG--------FNALLKIVE----EPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP----RTMRALIARICEQE---  193 (584)
T ss_pred             HH--------HHHHHHHHh----cCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCH----HHHHHHHHHHHHHc---
Confidence            21        223444444    345566777666333221222233455566654443    78888887666522   


Q ss_pred             HhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         251 RVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       251 ~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                         .....++....+++.++|...-+-..++.+.
T Consensus       194 ---gi~i~~~al~~Ia~~s~GdlR~aln~Ldql~  224 (584)
T PRK14952        194 ---GVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL  224 (584)
T ss_pred             ---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence               1223455677888999999888888887764

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.48  E-value=0.0005  Score=78.58  Aligned_cols=206  Identities=12%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .+.|.+-+.+.++.|+...+     -+..+.++|++|+|||+++..+...+....       +.....+-.|.       
T Consensus        17 ~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-------~~~~~pC~~C~-------   77 (559)
T PRK05563         17 DVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLN-------PPDGEPCNECE-------   77 (559)
T ss_pred             hccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-------CCCCCCCCccH-------
Confidence            45677777788999998642     456778899999999999999986653211       00111111111       


Q ss_pred             CHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                              -+.++.. ..+++.+.     . ..  +        ....+.+++++..+ .......+.-++|||-.|...
T Consensus        78 --------~C~~i~~g~~~dv~ei-----d-aa--s--------~~~vd~ir~i~~~v-~~~p~~~~~kViIIDE~~~Lt  132 (559)
T PRK05563         78 --------ICKAITNGSLMDVIEI-----D-AA--S--------NNGVDEIRDIRDKV-KYAPSEAKYKVYIIDEVHMLS  132 (559)
T ss_pred             --------HHHHHhcCCCCCeEEe-----e-cc--c--------cCCHHHHHHHHHHH-hhCcccCCeEEEEEECcccCC
Confidence                    1222221 12221110     0 00  0        00012233332221 112222344588899888875


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      .+.        ...|.+.+.    ..|.++.+|+++.... .+.. ..+.+..+++..+.    ..+|..++...+... 
T Consensus       133 ~~a--------~naLLKtLE----epp~~~ifIlatt~~~-ki~~tI~SRc~~~~f~~~~----~~ei~~~L~~i~~~e-  194 (559)
T PRK05563        133 TGA--------FNALLKTLE----EPPAHVIFILATTEPH-KIPATILSRCQRFDFKRIS----VEDIVERLKYILDKE-  194 (559)
T ss_pred             HHH--------HHHHHHHhc----CCCCCeEEEEEeCChh-hCcHHHHhHheEEecCCCC----HHHHHHHHHHHHHHc-
Confidence            321        223333333    3355666665553322 2322 22334445554333    478888887766522 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                           .-....+..+.++..++|...-|-..++.+
T Consensus       195 -----gi~i~~~al~~ia~~s~G~~R~al~~Ldq~  224 (559)
T PRK05563        195 -----GIEYEDEALRLIARAAEGGMRDALSILDQA  224 (559)
T ss_pred             -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 122334667788889999888776666654

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.47  E-value=0.0018  Score=71.95  Aligned_cols=106  Identities=14%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhh
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~  234 (978)
                      .+-++|||..|....+.        ...|.+.+.    ..|+.+.+|+++.... .+.+ ..+.+..+++....    .+
T Consensus       121 ~~kvvIIdead~lt~~~--------~n~LLk~lE----ep~~~~~~Il~t~~~~-kl~~tI~sRc~~v~f~~l~----~~  183 (451)
T PRK06305        121 RYKIYIIDEVHMLTKEA--------FNSLLKTLE----EPPQHVKFFLATTEIH-KIPGTILSRCQKMHLKRIP----EE  183 (451)
T ss_pred             CCEEEEEecHHhhCHHH--------HHHHHHHhh----cCCCCceEEEEeCChH-hcchHHHHhceEEeCCCCC----HH
Confidence            34578999988876321        223444444    2344666666663322 2322 22344456664433    37


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ||..++...+...      .....++..+.|+.+++|....+...++.+.
T Consensus       184 el~~~L~~~~~~e------g~~i~~~al~~L~~~s~gdlr~a~~~Lekl~  227 (451)
T PRK06305        184 TIIDKLALIAKQE------GIETSREALLPIARAAQGSLRDAESLYDYVV  227 (451)
T ss_pred             HHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8888888765521      1224456778999999999988887777664

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.47  E-value=0.00018  Score=67.59  Aligned_cols=43  Identities=35%  Similarity=0.380  Sum_probs=34.0

Q ss_pred             ccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          14 CREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        14 ~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ||+-.++.+..++..+      ..+.+.|+|+||+|||+++..+...+.
T Consensus         2 ~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009           2 GQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             chHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4555667777777653      456889999999999999999997754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.46  E-value=0.0019  Score=68.85  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..|-+.+.+.+..|+.+.+     -+..+.++|++|+|||+++..++..+.
T Consensus         6 i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~   51 (313)
T PRK05564          6 IIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKIL   51 (313)
T ss_pred             ccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHc
Confidence            3466667788999998643     456788999999999999999986653

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.45  E-value=0.00091  Score=74.24  Aligned_cols=27  Identities=37%  Similarity=0.619  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+.++|+|+||||||++++.+..++..
T Consensus       216 p~GILLyGPPGTGKT~LAKAlA~eL~~  242 (512)
T TIGR03689       216 PKGVLLYGPPGCGKTLIAKAVANSLAQ  242 (512)
T ss_pred             CcceEEECCCCCcHHHHHHHHHHhhcc
Confidence            456899999999999999999987754

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.44  E-value=0.0026  Score=71.25  Aligned_cols=47  Identities=17%  Similarity=0.216  Sum_probs=36.6

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.|-+.+...++.|+...+     -...+.++|+||+|||+++..+...+-
T Consensus        17 diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         17 EVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             HccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34566777778999998642     446678899999999999999986653

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.42  E-value=0.0013  Score=74.35  Aligned_cols=106  Identities=8%  Similarity=0.044  Sum_probs=59.8

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      ..-+||||-.|....+.        ...|.+.+.    ..+..+.+|+++...........+.+..+++..+.    .++
T Consensus       119 ~~kVIIIDEad~Lt~~a--------~naLLk~LE----EP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs----~~e  182 (624)
T PRK14959        119 RYKVFIIDEAHMLTREA--------FNALLKTLE----EPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLS----EAG  182 (624)
T ss_pred             CceEEEEEChHhCCHHH--------HHHHHHHhh----ccCCCEEEEEecCChhhhhHHHHhhhhccccCCCC----HHH
Confidence            44578888888775321        223334443    22345555555533222122222344556665444    378


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                      |..++...+...      ......+..+.|++.++|...++--.++.+
T Consensus       183 L~~~L~~il~~e------gi~id~eal~lIA~~s~GdlR~Al~lLeql  224 (624)
T PRK14959        183 LEAHLTKVLGRE------GVDYDPAAVRLIARRAAGSVRDSMSLLGQV  224 (624)
T ss_pred             HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            888887654421      122445678889999999988887777654

>KOG0521|consensus

Probab=97.41  E-value=0.00014  Score=84.52  Aligned_cols=84  Identities=37%  Similarity=0.526  Sum_probs=79.7

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384         376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG  455 (978)
Q Consensus       376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  455 (978)
                      ..|.|+||.|+..|..-++++|++.|+++|..|..|++|+|.+...|+...+..|+++|++.+..+..+.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             Ccee
Q psy9384         456 HLEV  459 (978)
Q Consensus       456 ~~~i  459 (978)
                      +.++
T Consensus       734 ~~d~  737 (785)
T KOG0521|consen  734 NADI  737 (785)
T ss_pred             cccH
Confidence            6665

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.40  E-value=0.002  Score=75.46  Aligned_cols=44  Identities=27%  Similarity=0.459  Sum_probs=33.9

Q ss_pred             cccccccchH---HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFV---KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~---~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .|+|++-+..   .+.+.+...      .-.-++|+|+||+|||+|+..+...
T Consensus        29 d~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~   75 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH   75 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4678888774   467777754      3345789999999999999999844

>KOG0734|consensus

Probab=97.36  E-value=0.00058  Score=72.68  Aligned_cols=51  Identities=24%  Similarity=0.466  Sum_probs=36.0

Q ss_pred             HHHHHHHhcCCCCCC---CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecccc
Q psy9384          20 VKLVHCLESKTNSKP---GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS   84 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~---~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~   84 (978)
                      +++.++|.+++-...   .=.+...++|+||+|||.|++.|.              +.-.|.|||+.-
T Consensus       317 eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvA--------------GEA~VPFF~~sG  370 (752)
T KOG0734|consen  317 EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVA--------------GEAGVPFFYASG  370 (752)
T ss_pred             HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhh--------------cccCCCeEeccc
Confidence            457788887532100   014567899999999999999998              345688888763

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.35  E-value=0.0021  Score=71.39  Aligned_cols=107  Identities=13%  Similarity=0.052  Sum_probs=58.0

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-------cccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-------MFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-------~~~~~~~i~l~~~~~~~  231 (978)
                      +++||-+|.....  +....++...+..+...       +..++++|...+..+..       +|.....+.+...+   
T Consensus       202 lLiiDDi~~l~~~--~~~~~~l~~~~n~~~~~-------~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd---  269 (405)
T TIGR00362       202 LLLIDDIQFLAGK--ERTQEEFFHTFNALHEN-------GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPD---  269 (405)
T ss_pred             EEEEehhhhhcCC--HHHHHHHHHHHHHHHHC-------CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCC---
Confidence            7888999876532  11122233333333331       12466666654443332       22222234553322   


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .++....+..++...      .....+++.+.|+++..|.+.-+.-++..|.
T Consensus       270 -~~~r~~il~~~~~~~------~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~  315 (405)
T TIGR00362       270 -LETRLAILQKKAEEE------GLELPDEVLEFIAKNIRSNVRELEGALNRLL  315 (405)
T ss_pred             -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence             345666666665531      2334567888899999988877776666664

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06620 hypothetical protein; Validated

Probab=97.34  E-value=0.0031  Score=62.44  Aligned_cols=102  Identities=9%  Similarity=0.149  Sum_probs=57.7

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-----hhhcccCccccccccccchhhh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-----IKKMFLGFHKLSLDDLRKSHVI  233 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-----i~~~~~~~~~i~l~~~~~~~~~  233 (978)
                      +++||-+|....       .    .+..++....+.   +..++++++++++.     ++.++.....+++...+    .
T Consensus        88 ~lliDdi~~~~~-------~----~lf~l~N~~~e~---g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd----~  149 (214)
T PRK06620         88 AFIIEDIENWQE-------P----ALLHIFNIINEK---QKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPD----D  149 (214)
T ss_pred             EEEEeccccchH-------H----HHHHHHHHHHhc---CCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCC----H
Confidence            577888885431       1    344444433221   22577777665554     23333333345664333    2


Q ss_pred             hHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         234 RDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       234 ~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      +++...+......      ..-...+++.+-|+++..|.+.=+.-+++.|.
T Consensus       150 ~~~~~~l~k~~~~------~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~  194 (214)
T PRK06620        150 ELIKILIFKHFSI------SSVTISRQIIDFLLVNLPREYSKIIEILENIN  194 (214)
T ss_pred             HHHHHHHHHHHHH------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            4566666655442      11245678899999999999877776666663

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.33  E-value=0.0033  Score=72.52  Aligned_cols=105  Identities=11%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHH
Q psy9384         158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQ  237 (978)
Q Consensus       158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~  237 (978)
                      =++|||..|....+.        ...|.+.+.    ..|....+|+++......+....+.+..+++..+..    .||.
T Consensus       123 KVvIIdea~~Ls~~a--------~naLLK~LE----epp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~----~ei~  186 (614)
T PRK14971        123 KIYIIDEVHMLSQAA--------FNAFLKTLE----EPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQV----ADIV  186 (614)
T ss_pred             EEEEEECcccCCHHH--------HHHHHHHHh----CCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCH----HHHH
Confidence            377888888875321        224444444    334455666555332222333334455566654443    7888


Q ss_pred             HHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         238 QYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       238 ~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      .++...+...      .-....+..+.|+++++|....+...++.+.
T Consensus       187 ~~L~~ia~~e------gi~i~~~al~~La~~s~gdlr~al~~Lekl~  227 (614)
T PRK14971        187 NHLQYVASKE------GITAEPEALNVIAQKADGGMRDALSIFDQVV  227 (614)
T ss_pred             HHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8888665522      1223445678899999999988887777653

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.32  E-value=0.0018  Score=72.75  Aligned_cols=107  Identities=12%  Similarity=0.064  Sum_probs=60.8

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccch-------hhcccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSI-------KKMFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i-------~~~~~~~~~i~l~~~~~~~  231 (978)
                      ++|||-+|.....  +....++...+..+....       ..++++|..++..+       ..+|.....+++...+   
T Consensus       214 lLiiDDi~~l~~~--~~~~~~l~~~~n~l~~~~-------~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd---  281 (450)
T PRK00149        214 VLLIDDIQFLAGK--ERTQEEFFHTFNALHEAG-------KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPD---  281 (450)
T ss_pred             EEEEehhhhhcCC--HHHHHHHHHHHHHHHHCC-------CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCC---
Confidence            7889999887532  111223334443433321       23666666554333       2233222345554322   


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .++....++.+...      ......+++++-|+++..|.+..+.-+++.|.
T Consensus       282 -~~~r~~il~~~~~~------~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~  327 (450)
T PRK00149        282 -LETRIAILKKKAEE------EGIDLPDEVLEFIAKNITSNVRELEGALNRLI  327 (450)
T ss_pred             -HHHHHHHHHHHHHH------cCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence             34555666655552      12345678899999999999998887877775

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.31  E-value=0.0027  Score=70.32  Aligned_cols=105  Identities=10%  Similarity=0.103  Sum_probs=63.0

Q ss_pred             cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-cccCccccccccccchhhhhH
Q psy9384         157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-MFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      .-++|||-.|....+.        ...|.+.+.    .-|+.+++|+++.... .+.. ..+.+..+++..+.    .++
T Consensus       117 ~KVvIIDEah~Ls~~A--------~NaLLK~LE----ePp~~v~fIlatte~~-Kl~~tI~SRc~~~~f~~l~----~~e  179 (491)
T PRK14964        117 FKVYIIDEVHMLSNSA--------FNALLKTLE----EPAPHVKFILATTEVK-KIPVTIISRCQRFDLQKIP----TDK  179 (491)
T ss_pred             ceEEEEeChHhCCHHH--------HHHHHHHHh----CCCCCeEEEEEeCChH-HHHHHHHHhheeeeccccc----HHH
Confidence            3478888888775321        223444444    3455677777663322 2332 23345556664433    378


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      +..++...+...      .....++..+.|++.++|....+...++.+.
T Consensus       180 l~~~L~~ia~~E------gi~i~~eAL~lIa~~s~GslR~alslLdqli  222 (491)
T PRK14964        180 LVEHLVDIAKKE------NIEHDEESLKLIAENSSGSMRNALFLLEQAA  222 (491)
T ss_pred             HHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888887666522      2234456778899999999888777776654

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.31  E-value=0.0031  Score=71.88  Aligned_cols=207  Identities=11%  Similarity=0.108  Sum_probs=106.7

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      ...|=+.+.+.++.|+.+.+     -...+.++|+||+|||+++..+...+-...       +.....+-.|.       
T Consensus        17 diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-------~~~~~pC~~C~-------   77 (563)
T PRK06647         17 SLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVN-------GPTPMPCGECS-------   77 (563)
T ss_pred             HccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcccc-------CCCCCCCccch-------
Confidence            34566777788999998642     446788999999999999999987654211       00000111111       


Q ss_pred             CHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          91 SVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                              -++++... .+.+.+.     ...   +        ....+.++.+..... ......+.-++|||-.|...
T Consensus        78 --------~C~~i~~~~~~dv~~i-----dga---s--------~~~vddIr~l~e~~~-~~p~~~~~KVvIIDEa~~Ls  132 (563)
T PRK06647         78 --------SCKSIDNDNSLDVIEI-----DGA---S--------NTSVQDVRQIKEEIM-FPPASSRYRVYIIDEVHMLS  132 (563)
T ss_pred             --------HHHHHHcCCCCCeEEe-----cCc---c--------cCCHHHHHHHHHHHH-hchhcCCCEEEEEEChhhcC
Confidence                    11222211 1111000     000   0        000112222221111 11111234477888888875


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      .+.        ...|.+.+.    ..|+.+.+|+++.... .+... .+.+..+++..+..    +++..++....... 
T Consensus       133 ~~a--------~naLLK~LE----epp~~~vfI~~tte~~-kL~~tI~SRc~~~~f~~l~~----~el~~~L~~i~~~e-  194 (563)
T PRK06647        133 NSA--------FNALLKTIE----EPPPYIVFIFATTEVH-KLPATIKSRCQHFNFRLLSL----EKIYNMLKKVCLED-  194 (563)
T ss_pred             HHH--------HHHHHHhhc----cCCCCEEEEEecCChH-HhHHHHHHhceEEEecCCCH----HHHHHHHHHHHHHc-
Confidence            321        122333333    3455666666553322 23322 23344455544333    78888887666421 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                           .....++..+.|++.++|....+...++.+.
T Consensus       195 -----gi~id~eAl~lLa~~s~GdlR~alslLdkli  225 (563)
T PRK06647        195 -----QIKYEDEALKWIAYKSTGSVRDAYTLFDQVV  225 (563)
T ss_pred             -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 1234456778899999999999888887664

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.29  E-value=0.0028  Score=61.88  Aligned_cols=91  Identities=10%  Similarity=0.113  Sum_probs=51.6

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc-ccCccccccccccchhhh
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVI  233 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~  233 (978)
                      ..+-++|||-.|......        ...|...+.    ..|+...++++++... .+... .+....+++....    .
T Consensus        95 ~~~kviiide~~~l~~~~--------~~~Ll~~le----~~~~~~~~il~~~~~~-~l~~~i~sr~~~~~~~~~~----~  157 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAA--------ANALLKTLE----EPPPNTLFILITPSPE-KLLPTIRSRCQVLPFPPLS----E  157 (188)
T ss_pred             CCeEEEEEechhhhCHHH--------HHHHHHHhc----CCCCCeEEEEEECChH-hChHHHHhhcEEeeCCCCC----H
Confidence            345688888888876321        223444443    3344556666665332 23332 2344456665433    4


Q ss_pred             hHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHH
Q psy9384         234 RDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFL  274 (978)
Q Consensus       234 ~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~fl  274 (978)
                      .++..|+..+  .          ..++..+.+++.++|...
T Consensus       158 ~~~~~~l~~~--g----------i~~~~~~~i~~~~~g~~r  186 (188)
T TIGR00678       158 EALLQWLIRQ--G----------ISEEAAELLLALAGGSPG  186 (188)
T ss_pred             HHHHHHHHHc--C----------CCHHHHHHHHHHcCCCcc
Confidence            7888888776  1          123557788888888753

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.29  E-value=0.004  Score=67.61  Aligned_cols=51  Identities=18%  Similarity=0.262  Sum_probs=35.9

Q ss_pred             ccccccchHHHHHHHhcCCCC----CCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          12 FFCREWAFVKLVHCLESKTNS----KPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~----~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..|-+.+.+.++.++...+.-    ...-..-+.++|+||+|||+++..+...+.
T Consensus         7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~   61 (394)
T PRK07940          7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ   61 (394)
T ss_pred             ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            456777778888888864100    000234588999999999999999986543

>KOG0989|consensus

Probab=97.28  E-value=0.0021  Score=64.08  Aligned_cols=82  Identities=16%  Similarity=0.147  Sum_probs=45.0

Q ss_pred             CCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhH
Q psy9384         194 LFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCF  273 (978)
Q Consensus       194 ~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~f  273 (978)
                      ..+..++++++..-....|....+.+..+.......    .||..-++ .+...     ..-..-.+....+++.|+|.-
T Consensus       155 ~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d----~~iv~rL~-~Ia~~-----E~v~~d~~al~~I~~~S~GdL  224 (346)
T KOG0989|consen  155 DFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKD----EDIVDRLE-KIASK-----EGVDIDDDALKLIAKISDGDL  224 (346)
T ss_pred             ccccceEEEEEcCChhhCChHHHhhHHHhcCCCcch----HHHHHHHH-HHHHH-----hCCCCCHHHHHHHHHHcCCcH
Confidence            445555666555433333444444444455443332    23322111 11111     112334567889999999999


Q ss_pred             HHHHHHHhhhhc
Q psy9384         274 LYLERVLDGISN  285 (978)
Q Consensus       274 lw~~~~~~~l~~  285 (978)
                      .=|..+++.+..
T Consensus       225 R~Ait~Lqsls~  236 (346)
T KOG0989|consen  225 RRAITTLQSLSL  236 (346)
T ss_pred             HHHHHHHHHhhc
Confidence            999999998874

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=97.28  E-value=0.0058  Score=64.76  Aligned_cols=197  Identities=10%  Similarity=0.034  Sum_probs=98.9

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHH
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNF   95 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~   95 (978)
                      -|+-+-+++|+.+.+     -..-+.++|++|+||++++..++..+.-...       ...-+   |.       ..   
T Consensus         6 PWl~~~~~~~~~~~r-----~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~-------~~~~~---Cg-------~C---   60 (328)
T PRK05707          6 PWQQSLWQQLAGRGR-----HPHAYLLHGPAGIGKRALAERLAAALLCEAP-------QGGGA---CG-------SC---   60 (328)
T ss_pred             CCcHHHHHHHHHCCC-----cceeeeeECCCCCCHHHHHHHHHHHHcCCCC-------CCCCC---CC-------CC---
Confidence            377778899988632     3456889999999999999999866542110       00000   00       00   


Q ss_pred             HHHHHHHHh-cCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC
Q psy9384          96 IQSLVEQFS-SSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK  174 (978)
Q Consensus        96 l~sl~~QL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~  174 (978)
                        .-++.+. ..+|++...      .+.....       .-..++++++....-........+|+ |||..|....+.  
T Consensus        61 --~sC~~~~~g~HPD~~~i------~~~~~~~-------~i~id~iR~l~~~~~~~~~~~~~kv~-iI~~a~~m~~~a--  122 (328)
T PRK05707         61 --KGCQLLRAGSHPDNFVL------EPEEADK-------TIKVDQVRELVSFVVQTAQLGGRKVV-LIEPAEAMNRNA--  122 (328)
T ss_pred             --HHHHHHhcCCCCCEEEE------eccCCCC-------CCCHHHHHHHHHHHhhccccCCCeEE-EECChhhCCHHH--
Confidence              1111111 233432110      0000000       00013344433222211111234444 678888876432  


Q ss_pred             cCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhc
Q psy9384         175 IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHM  254 (978)
Q Consensus       175 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~  254 (978)
                            ...|.+.+.    .-|+++.+|++|..+..-+.-..+.+..+.+....    .+++..|+..+....       
T Consensus       123 ------aNaLLK~LE----EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~----~~~~~~~L~~~~~~~-------  181 (328)
T PRK05707        123 ------ANALLKSLE----EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS----NEESLQWLQQALPES-------  181 (328)
T ss_pred             ------HHHHHHHHh----CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC----HHHHHHHHHHhcccC-------
Confidence                  223444444    33456677777755543333333455666664333    368888887654211       


Q ss_pred             CcChHHHHHHHHhhchhhHHHHHHH
Q psy9384         255 NRDTAEMLNQLHIKSNGCFLYLERV  279 (978)
Q Consensus       255 ~~~~~~i~~~l~~~a~g~flw~~~~  279 (978)
                         .++-...++..++|.+.+|.-.
T Consensus       182 ---~~~~~~~~l~la~Gsp~~A~~l  203 (328)
T PRK05707        182 ---DERERIELLTLAGGSPLRALQL  203 (328)
T ss_pred             ---ChHHHHHHHHHcCCCHHHHHHH
Confidence               1222345677888988877544

>KOG0744|consensus

Probab=97.27  E-value=0.00056  Score=68.16  Aligned_cols=29  Identities=38%  Similarity=0.538  Sum_probs=25.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +.++++.++|+||+|||+|++.+.++|.-
T Consensus       175 t~NRliLlhGPPGTGKTSLCKaLaQkLSI  203 (423)
T KOG0744|consen  175 TWNRLILLHGPPGTGKTSLCKALAQKLSI  203 (423)
T ss_pred             eeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence            35789999999999999999999988863

>KOG0727|consensus

Probab=97.24  E-value=0.00079  Score=64.34  Aligned_cols=55  Identities=13%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             CCcEEEEEecccccccc---CCCcCCCcchhhHHHHHHhccCCC-CCceeeeeeecccc
Q psy9384         155 KTSYFILVDSIDETHVT---NKKIYSDKATCSIADLLARNHHLF-PPWLFLFCTVRRQS  209 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~---~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~sr~~~  209 (978)
                      ..+-+|+||-+|-+...   .+.-.-+++-+.|.+++.+....- ..+|++|..+.|..
T Consensus       247 napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad  305 (408)
T KOG0727|consen  247 NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD  305 (408)
T ss_pred             cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence            55678889988887431   111112345567777777664322 25899999987764

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.23  E-value=0.0023  Score=71.14  Aligned_cols=189  Identities=13%  Similarity=0.115  Sum_probs=101.9

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHH
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLV  100 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~  100 (978)
                      ..++|...+.    .....|+|+|++|+|||.|+..+...+..       ..++..+.|.          ++..+++.+.
T Consensus       129 aa~~~a~~~~----~~~npl~i~G~~G~GKTHLl~Ai~~~l~~-------~~~~~~v~yv----------~~~~f~~~~~  187 (450)
T PRK14087        129 AVQTVSKNPG----ISYNPLFIYGESGMGKTHLLKAAKNYIES-------NFSDLKVSYM----------SGDEFARKAV  187 (450)
T ss_pred             HHHHHHhCcC----cccCceEEECCCCCcHHHHHHHHHHHHHH-------hCCCCeEEEE----------EHHHHHHHHH
Confidence            3456665431    12346999999999999999998855431       1123334332          2334555555


Q ss_pred             HHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcc
Q psy9384         101 EQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKA  180 (978)
Q Consensus       101 ~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~  180 (978)
                      ..+-...    +.                       .+.+.+.+          ...-++|||=++-....  +...   
T Consensus       188 ~~l~~~~----~~-----------------------~~~~~~~~----------~~~dvLiIDDiq~l~~k--~~~~---  225 (450)
T PRK14087        188 DILQKTH----KE-----------------------IEQFKNEI----------CQNDVLIIDDVQFLSYK--EKTN---  225 (450)
T ss_pred             HHHHHhh----hH-----------------------HHHHHHHh----------ccCCEEEEeccccccCC--HHHH---
Confidence            4443210    00                       01111110          11237888888766421  1112   


Q ss_pred             hhhHHHHHHhccCCCCCceeeeeeecccccchh-------hcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhh
Q psy9384         181 TCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-------KMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVH  253 (978)
Q Consensus       181 ~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-------~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~  253 (978)
                       +.+..++.......   -.+|++|..++..+.       .+|.....+.+...    ..++...++..++....    .
T Consensus       226 -e~lf~l~N~~~~~~---k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~p----d~e~r~~iL~~~~~~~g----l  293 (450)
T PRK14087        226 -EIFFTIFNNFIEND---KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKL----DNKTATAIIKKEIKNQN----I  293 (450)
T ss_pred             -HHHHHHHHHHHHcC---CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCc----CHHHHHHHHHHHHHhcC----C
Confidence             23444444332211   146777665543332       22322333445433    34789999998887421    1


Q ss_pred             cCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         254 MNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       254 ~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      .....+++.+-|++.+.|...-+.-++..+.
T Consensus       294 ~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~  324 (450)
T PRK14087        294 KQEVTEEAINFISNYYSDDVRKIKGSVSRLN  324 (450)
T ss_pred             CCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            1245678999999999999998888887764

>KOG2227|consensus

Probab=97.17  E-value=0.005  Score=65.14  Aligned_cols=81  Identities=19%  Similarity=0.319  Sum_probs=55.5

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      .+-.|||-=++.+++|+..+=  ..+.++=|+++|-||+|||.+++.+.+++...+       ....+.|.-|-.-.   
T Consensus       150 ~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-------~~~~~v~inc~sl~---  217 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-------KSPVTVYINCTSLT---  217 (529)
T ss_pred             CCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-------ccceeEEEeecccc---
Confidence            456788888888888888763  334567799999999999999999998876432       22345666665333   


Q ss_pred             cCHHHHHHHHHHHH
Q psy9384          90 FSVQNFIQSLVEQF  103 (978)
Q Consensus        90 ~~~~~~l~sl~~QL  103 (978)
                       .+..++..+..-+
T Consensus       218 -~~~aiF~kI~~~~  230 (529)
T KOG2227|consen  218 -EASAIFKKIFSSL  230 (529)
T ss_pred             -chHHHHHHHHHHH
Confidence             4444555444444

>KOG0739|consensus

Probab=97.14  E-value=0.0012  Score=64.99  Aligned_cols=21  Identities=43%  Similarity=0.824  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh
Q psy9384          38 GGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +...++|+||+|||.|++.|.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVA  187 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVA  187 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHH
Confidence            567899999999999999998

>KOG1514|consensus

Probab=97.13  E-value=0.0054  Score=68.23  Aligned_cols=191  Identities=18%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      +..-||+--|+++..+++..=. ..+..+.++|+|-||+|||.....|++.|++++.+.    .-..+.|.+.+  .-.-
T Consensus       396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~----e~p~f~yveIN--gm~l  468 (767)
T KOG1514|consen  396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQK----ELPKFDYVEIN--GLRL  468 (767)
T ss_pred             ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhc----CCCCccEEEEc--ceee
Confidence            4566899888887777765311 123556899999999999999999999988755443    13345555544  4455


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .++..++..|..+|-.....-...                       ++.+..-|.    .-....++.+++||-||-.=
T Consensus       469 ~~~~~~Y~~I~~~lsg~~~~~~~a-----------------------l~~L~~~f~----~~k~~~~~~VvLiDElD~Lv  521 (767)
T KOG1514|consen  469 ASPREIYEKIWEALSGERVTWDAA-----------------------LEALNFRFT----VPKPKRSTTVVLIDELDILV  521 (767)
T ss_pred             cCHHHHHHHHHHhcccCcccHHHH-----------------------HHHHHHhhc----cCCCCCCCEEEEeccHHHHh
Confidence            668888888888887653221111                       111111111    12334667999999999975


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhccc-------CccccccccccchhhhhHHHHHHHH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFL-------GFHKLSLDDLRKSHVIRDMQQYILL  242 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~-------~~~~i~l~~~~~~~~~~Di~~yi~~  242 (978)
                      ..+     .+   .+-.++. ++..-.+.+.+|+++-.- .-.++.+.       ++..|....++    ..-++.-|..
T Consensus       522 tr~-----Qd---VlYn~fd-Wpt~~~sKLvvi~IaNTm-dlPEr~l~nrvsSRlg~tRi~F~pYt----h~qLq~Ii~~  587 (767)
T KOG1514|consen  522 TRS-----QD---VLYNIFD-WPTLKNSKLVVIAIANTM-DLPERLLMNRVSSRLGLTRICFQPYT----HEQLQEIISA  587 (767)
T ss_pred             ccc-----HH---HHHHHhc-CCcCCCCceEEEEecccc-cCHHHHhccchhhhccceeeecCCCC----HHHHHHHHHH
Confidence            432     11   2333332 332222445555555432 22334443       23444444333    4667777777


Q ss_pred             HhcCch
Q psy9384         243 RLASEE  248 (978)
Q Consensus       243 ~l~~~~  248 (978)
                      ||..+.
T Consensus       588 RL~~~~  593 (767)
T KOG1514|consen  588 RLKGLD  593 (767)
T ss_pred             hhcchh
Confidence            877663

>KOG0520|consensus

Probab=97.12  E-value=0.00057  Score=78.87  Aligned_cols=119  Identities=24%  Similarity=0.328  Sum_probs=95.2

Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHH
Q psy9384         339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL-EAGANINHTDCEGWTPLRS  417 (978)
Q Consensus       339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~  417 (978)
                      ....|.+.+|.++..+..-++..+++. .+......|..|...+|. |..++.++.-+++ =.|..++.+|..|+||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            345677999999999999999999984 255555667778888888 5555556555555 4678899999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHhcCCcee
Q psy9384         418 ASWGGHSAVVKLLLQSGADVN------CSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       418 A~~~g~~~iv~~Ll~~g~~~~------~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      |+.+|+..++..|++.|++..      .....|.|+-..|..+|+..+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence            999999999999998876533      334458899999999999998

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.12  E-value=0.0027  Score=65.59  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..-+.++|+||+|||+++..+...+
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999998654

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK05642 DNA replication initiation factor; Validated

Probab=97.12  E-value=0.0041  Score=62.81  Aligned_cols=107  Identities=12%  Similarity=0.092  Sum_probs=58.8

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhh-------cccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKK-------MFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~-------~~~~~~~i~l~~~~~~~  231 (978)
                      +++||-++-....  +...    +.+.+++.....   .+..++++++..++.+..       ++.....+.++..+   
T Consensus       100 ~LiiDDi~~~~~~--~~~~----~~Lf~l~n~~~~---~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~---  167 (234)
T PRK05642        100 LVCLDDLDVIAGK--ADWE----EALFHLFNRLRD---SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLS---  167 (234)
T ss_pred             EEEEechhhhcCC--hHHH----HHHHHHHHHHHh---cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCC---
Confidence            6788988865421  1111    234444443321   123577777655443332       22222344454323   


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .++....+..+....      .-...+++.+-|+++..|.+.-+.-+++.|.
T Consensus       168 -~e~~~~il~~ka~~~------~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~  213 (234)
T PRK05642        168 -DEDKLRALQLRASRR------GLHLTDEVGHFILTRGTRSMSALFDLLERLD  213 (234)
T ss_pred             -HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence             245666665444321      1234568899999999999888888888774

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.10  E-value=0.0047  Score=68.88  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+.++|+||||||.+++.+...+
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~  283 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDW  283 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHh
Confidence            34668899999999999999998543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.08  E-value=0.0059  Score=67.91  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+|..++     +.-.-|+|+|+||+|||.|+..+..++.
T Consensus       120 ~~~~~~~~-----~~~n~l~lyG~~G~GKTHLl~ai~~~l~  155 (440)
T PRK14088        120 ALEVAKNP-----GRYNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_pred             HHHHHhCc-----CCCCeEEEEcCCCCcHHHHHHHHHHHHH
Confidence            45666543     2234599999999999999999986643

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.06  E-value=0.0053  Score=59.32  Aligned_cols=54  Identities=24%  Similarity=0.255  Sum_probs=34.2

Q ss_pred             CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384           8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus         8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .=..|+|-+-+....+-+++.-.. ....-.-+.++|+||+|||||+..|..++.
T Consensus        22 ~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~   75 (233)
T PF05496_consen   22 SLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELG   75 (233)
T ss_dssp             SCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred             CHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccC
Confidence            335688888888876666553100 000123488999999999999999986653

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]

Probab=97.06  E-value=0.00074  Score=81.65  Aligned_cols=141  Identities=18%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhh
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~  234 (978)
                      ..++.+++|||||.....    ....++.+..++..-    | ...+|+++|+..  ....+.++...++.......+..
T Consensus       304 ~g~~llLlDGlDe~~~~~----~~~~~~~i~~f~~~~----~-~~~~iltcR~~~--~~~~~~~f~~~ei~~~~~~~i~~  372 (824)
T COG5635         304 TGKLLLLLDGLDELEPKN----QRALIREINKFLQEY----P-DAQVLLTCRPDT--YKEEFKGFAVFEIYKFLDLQINQ  372 (824)
T ss_pred             ccchhhHhhccchhhhhh----HHHHHHHHHHHhhhc----c-CCeEEEEeccch--hhhhhhhhhhccchhhhHHHHHH
Confidence            466899999999998543    333445566666533    2 356788887754  33333345555554444434444


Q ss_pred             HHH-HHHHHHhcCchHHHhhcCcChHHHHHHHHhhc-------hhhHHHHHHHHhhhhccceeeccccccccchhHHHHH
Q psy9384         235 DMQ-QYILLRLASEESLRVHMNRDTAEMLNQLHIKS-------NGCFLYLERVLDGISNGLIILREIKDIPGTLNGLYLW  306 (978)
Q Consensus       235 Di~-~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a-------~g~flw~~~~~~~l~~~~~~~~~l~~lp~~l~~~y~~  306 (978)
                      .+. .+....+....   ...+........++...-       ..+++-+.+.|..-       +....+|.....+|..
T Consensus       373 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~-------~~~~~lP~~~~~ly~~  442 (824)
T COG5635         373 FILYQWLDAFIEDWF---GDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIW-------QAQGDLPESRAELYEQ  442 (824)
T ss_pred             HHHHHHHHHHHHhhh---cccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhh-------hHHhhCCCCcHHHHHH
Confidence            443 33222222110   000011001111111111       22333333333222       2456899999999999


Q ss_pred             HHhhcccchh
Q psy9384         307 LSQRLLSTKQ  316 (978)
Q Consensus       307 ~~~~~~~~~~  316 (978)
                      ....+....+
T Consensus       443 ~~~~~~~~~d  452 (824)
T COG5635         443 AVDALLGRED  452 (824)
T ss_pred             HHHHHHhccc
Confidence            9998866543

>KOG0520|consensus

Probab=97.04  E-value=0.00075  Score=77.92  Aligned_cols=122  Identities=22%  Similarity=0.222  Sum_probs=58.4

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCcCCCCCCcHHHHHHh
Q psy9384         376 KHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLL-QSGADVNCSDMGGRTALRAAAW  453 (978)
Q Consensus       376 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~~~~~~t~l~~A~~  453 (978)
                      ..|++.+|.++..++..+++.+++. |......|..|...+|+|+ .++.+..-+|+ -.|..++.+|..|+||||+|+.
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhh
Confidence            3455555555555555555555553 4333444444444555522 23333322222 2344555555555555555555


Q ss_pred             cCCceeeeeccchHHHHHHHHcCCCCcc------cCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384         454 GGHLEVTIVLGPLCVVKLLLAAGAHVNA------ADSEGRTALIASAYMGHADIVSSILE  507 (978)
Q Consensus       454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~------~~~~~~t~L~~A~~~~~~~~v~~Ll~  507 (978)
                      .|+..+         +..|++.|++...      ....|.|+-..|-.+|+..+..+|-+
T Consensus       651 ~G~e~l---------~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  651 RGREKL---------VASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cCHHHH---------HHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            555555         5555554433221      12234455555555555555555443

>TIGR00763 lon ATP-dependent protease La

Probab=97.04  E-value=0.0011  Score=79.44  Aligned_cols=51  Identities=20%  Similarity=0.211  Sum_probs=35.6

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...|-+.+.+++.+|+.............++++|+||+|||+++..+...+
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l  371 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL  371 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            345666666777777653211122244589999999999999999998665

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.02  E-value=0.0029  Score=61.09  Aligned_cols=27  Identities=30%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+-..++|+||+|||++++.+.....
T Consensus       150 APknVLFyGppGTGKTm~Akalane~k  176 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAK  176 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccC
Confidence            456788999999999999999986543

>CHL00181 cbbX CbbX; Provisional

Probab=96.98  E-value=0.0087  Score=62.28  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..++++|+||+|||+++..+...+
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            348999999999999999997543

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.94  E-value=0.0088  Score=62.31  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .-++++|+||+|||+++..+...+
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHH
Confidence            368999999999999998877544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG2028|consensus

Probab=96.93  E-value=0.015  Score=59.20  Aligned_cols=35  Identities=34%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +...+++.      .-.-+.+.|+||+|||+|+..++...+
T Consensus       153 lrs~ieq~------~ipSmIlWGppG~GKTtlArlia~tsk  187 (554)
T KOG2028|consen  153 LRSLIEQN------RIPSMILWGPPGTGKTTLARLIASTSK  187 (554)
T ss_pred             HHHHHHcC------CCCceEEecCCCCchHHHHHHHHhhcC
Confidence            45566653      333466679999999999999986644

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0018  Score=65.90  Aligned_cols=56  Identities=16%  Similarity=0.204  Sum_probs=37.1

Q ss_pred             CCCcEEEEEecccccccc---CCCcCCCcchhhHHHHHHhccCCCC-Cceeeeeeecccc
Q psy9384         154 PKTSYFILVDSIDETHVT---NKKIYSDKATCSIADLLARNHHLFP-PWLFLFCTVRRQS  209 (978)
Q Consensus       154 ~~~~~~iviDaLDE~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~sr~~~  209 (978)
                      ...+-+|+||-+|-+...   +...--+++=+.+.+|+.+...--| .+|++|..+.|..
T Consensus       242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D  301 (406)
T COG1222         242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD  301 (406)
T ss_pred             hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence            356789999999988542   1111123355677788887654334 5899999997764

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.82  E-value=0.0011  Score=69.42  Aligned_cols=52  Identities=23%  Similarity=0.298  Sum_probs=36.5

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      |+|=+-.++++.+|+..........+++++|.|+||+|||+|+..+...+..
T Consensus        53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4444555566667766532112335689999999999999999999977754

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG4658|consensus

Probab=96.82  E-value=0.028  Score=67.67  Aligned_cols=204  Identities=17%  Similarity=0.174  Sum_probs=120.8

Q ss_pred             cccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCH
Q psy9384          13 FCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSV   92 (978)
Q Consensus        13 ~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~   92 (978)
                      +|.+-..++...+|-.+      +.+++-|+|..|.|||||++.+..+...-      ...-..+++.+.+.    .-+.
T Consensus       161 VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v------~~~Fd~~iWV~VSk----~f~~  224 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEV------GNHFDGVIWVVVSK----EFTT  224 (889)
T ss_pred             ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchh------cccCceEEEEEEcc----cccH
Confidence            78888889999999975      34899999999999999999999876420      00123344444332    4455


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc-cccc
Q psy9384          93 QNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE-THVT  171 (978)
Q Consensus        93 ~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE-~~~~  171 (978)
                      ..+-..++.-|....+..-+.                      ..+.....+...|.     .+++.+|+|-+=+ .+  
T Consensus       225 ~~iq~~Il~~l~~~~~~~~~~----------------------~~~~~~~~i~~~L~-----~krfllvLDDIW~~~d--  275 (889)
T KOG4658|consen  225 RKIQQTILERLGLLDEEWEDK----------------------EEDELASKLLNLLE-----GKRFLLVLDDIWEEVD--  275 (889)
T ss_pred             HhHHHHHHHHhccCCcccchh----------------------hHHHHHHHHHHHhc-----cCceEEEEeccccccc--
Confidence            667777777666643321110                      00233333343343     5789999997622 11  


Q ss_pred             CCCcCCCcchhhHHHHHHhccCCCCC---ceeeeeeecccccchhhc-ccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         172 NKKIYSDKATCSIADLLARNHHLFPP---WLFLFCTVRRQSKSIKKM-FLGFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       172 ~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~sr~~~~~i~~~-~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                                  +..+-    ..+|.   +-++++|||...  +... ......++++-...    +|.-..+...+-..
T Consensus       276 ------------w~~I~----~~~p~~~~g~KvvlTTRs~~--V~~~~m~~~~~~~v~~L~~----~eaW~LF~~~v~~~  333 (889)
T KOG4658|consen  276 ------------WDKIG----VPFPSRENGSKVVLTTRSEE--VCGRAMGVDYPIEVECLTP----EEAWDLFQKKVGPN  333 (889)
T ss_pred             ------------HHhcC----CCCCCccCCeEEEEEeccHh--hhhccccCCccccccccCc----cccHHHHHHhhccc
Confidence                        11111    13332   378889998864  4333 33344455544444    34444444333211


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhcc
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNG  286 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~  286 (978)
                      .   .......+++..++++++.|.+|=+...-..++..
T Consensus       334 ~---~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K  369 (889)
T KOG4658|consen  334 T---LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACK  369 (889)
T ss_pred             c---ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCC
Confidence            1   00112267889999999999999887777777644

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.80  E-value=0.0022  Score=66.14  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ++++++...|+..        ++-++|.|+||+|||+|+..+..
T Consensus         8 ~~l~~~~l~~l~~--------g~~vLL~G~~GtGKT~lA~~la~   43 (262)
T TIGR02640         8 KRVTSRALRYLKS--------GYPVHLRGPAGTGKTTLAMHVAR   43 (262)
T ss_pred             HHHHHHHHHHHhc--------CCeEEEEcCCCCCHHHHHHHHHH
Confidence            3456678888884        35678999999999999999974

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.80  E-value=0.0082  Score=65.79  Aligned_cols=26  Identities=38%  Similarity=0.685  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+.|+|+||||||++++.+...+
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~  189 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHET  189 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHh
Confidence            34568899999999999999998543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.79  E-value=0.015  Score=65.77  Aligned_cols=107  Identities=12%  Similarity=0.060  Sum_probs=54.9

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccc-------hhhcccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKS-------IKKMFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~-------i~~~~~~~~~i~l~~~~~~~  231 (978)
                      ++|||-+|-....  +....++...+..+...       +..+|++|.+.+.+       +..+|...-.++|..-+   
T Consensus       380 LLlIDDIq~l~gk--e~tqeeLF~l~N~l~e~-------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD---  447 (617)
T PRK14086        380 ILLVDDIQFLEDK--ESTQEEFFHTFNTLHNA-------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPE---  447 (617)
T ss_pred             EEEEehhccccCC--HHHHHHHHHHHHHHHhc-------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCC---
Confidence            6888888877532  11123333333333321       22477777765432       33333333334553222   


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .+.....+..+...      ..-...+++++-|+++..+++.-+.-++..|.
T Consensus       448 -~EtR~aIL~kka~~------r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~  493 (617)
T PRK14086        448 -LETRIAILRKKAVQ------EQLNAPPEVLEFIASRISRNIRELEGALIRVT  493 (617)
T ss_pred             -HHHHHHHHHHHHHh------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence             23444455444331      12334567888888888877766666666553

>KOG2004|consensus

Probab=96.78  E-value=0.0042  Score=68.97  Aligned_cols=166  Identities=16%  Similarity=0.245  Sum_probs=88.0

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL   99 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl   99 (978)
                      +++-+++.-..=.++..+++|+++|+||.|||.+++.|...|-.                =||+++...-++...|=   
T Consensus       421 eRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR----------------kFfRfSvGG~tDvAeIk---  481 (906)
T KOG2004|consen  421 ERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR----------------KFFRFSVGGMTDVAEIK---  481 (906)
T ss_pred             HHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC----------------ceEEEeccccccHHhhc---
Confidence            44555554322224457789999999999999999999977643                15555544444332220   


Q ss_pred             HHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCc
Q psy9384         100 VEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDK  179 (978)
Q Consensus       100 ~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~  179 (978)
                                  -+-+.+..     ...              --+.++|.......+  +|+||-+|-...+.    +.+
T Consensus       482 ------------GHRRTYVG-----AMP--------------GkiIq~LK~v~t~NP--liLiDEvDKlG~g~----qGD  524 (906)
T KOG2004|consen  482 ------------GHRRTYVG-----AMP--------------GKIIQCLKKVKTENP--LILIDEVDKLGSGH----QGD  524 (906)
T ss_pred             ------------ccceeeec-----cCC--------------hHHHHHHHhhCCCCc--eEEeehhhhhCCCC----CCC
Confidence                        00001111     000              011123334333333  78899999887543    333


Q ss_pred             chhhHHHHHHhccC--------CCC---CceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHH
Q psy9384         180 ATCSIADLLARNHH--------LFP---PWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYIL  241 (978)
Q Consensus       180 ~~~~l~~l~~~~~~--------~~~---~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~  241 (978)
                      -...|.+++...++        ..|   +.|.+|||.......-..+++....|++.++..++--+--++|+-
T Consensus       525 PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi  597 (906)
T KOG2004|consen  525 PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI  597 (906)
T ss_pred             hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence            44455555543211        123   568888888665432223344456677766655333333444443

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.77  E-value=0.012  Score=64.16  Aligned_cols=26  Identities=38%  Similarity=0.687  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.+.|+|+||||||+|+..+...+
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l  203 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHT  203 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhc
Confidence            34568889999999999999998553

>PF13173 AAA_14: AAA domain

Probab=96.77  E-value=0.0028  Score=57.24  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++++.|+|+.|+|||||+..+++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            47899999999999999999996654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.75  E-value=0.012  Score=61.26  Aligned_cols=26  Identities=27%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -..++.|+|+||||||.++..+...+
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~el  172 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKM  172 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999998554

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=96.75  E-value=0.021  Score=63.39  Aligned_cols=106  Identities=10%  Similarity=0.051  Sum_probs=54.5

Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-------hcccCccccccccccchh
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-------KMFLGFHKLSLDDLRKSH  231 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-------~~~~~~~~i~l~~~~~~~  231 (978)
                      +++||-++-+...  +....++...+..+...       +..+|++|...+..+.       .+|.....+.+...    
T Consensus       205 vLiIDDiq~l~~k--~~~qeelf~l~N~l~~~-------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~p----  271 (445)
T PRK12422        205 ALFIEDIEVFSGK--GATQEEFFHTFNSLHTE-------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPL----  271 (445)
T ss_pred             EEEEcchhhhcCC--hhhHHHHHHHHHHHHHC-------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCC----
Confidence            7888877766432  11223333333333321       2357777755433332       22222234455432    


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                      ..++...++..+....      .....+++.+-|+.+..|...=+.-+++.|
T Consensus       272 d~e~r~~iL~~k~~~~------~~~l~~evl~~la~~~~~dir~L~g~l~~l  317 (445)
T PRK12422        272 TKEGLRSFLERKAEAL------SIRIEETALDFLIEALSSNVKSLLHALTLL  317 (445)
T ss_pred             CHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            2367778887777632      133456777777777777665444444444

>KOG2543|consensus

Probab=96.74  E-value=0.013  Score=60.33  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.|||-=...+..-+-..+   ..-...+.|+|..|+|||.+..++.+++.-            .-.|--|.    +-
T Consensus         6 ~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------------~~vw~n~~----ec   66 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL------------ENVWLNCV----EC   66 (438)
T ss_pred             cCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCC------------cceeeehH----Hh
Confidence            578899987778888877642   124567899999999999999999977621            11221111    23


Q ss_pred             cCHHHHHHHHHHHHh
Q psy9384          90 FSVQNFIQSLVEQFS  104 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~  104 (978)
                      -+..-++..|+.++-
T Consensus        67 ft~~~lle~IL~~~~   81 (438)
T KOG2543|consen   67 FTYAILLEKILNKSQ   81 (438)
T ss_pred             ccHHHHHHHHHHHhc
Confidence            367788888988883

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.74  E-value=0.0034  Score=54.50  Aligned_cols=42  Identities=17%  Similarity=0.089  Sum_probs=33.4

Q ss_pred             chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +...+..|+.++   ++.+.-+|-++|.||+|||.+++.|++++-
T Consensus        37 v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ly   78 (127)
T PF06309_consen   37 VVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEHLY   78 (127)
T ss_pred             HHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence            334578898875   445666788899999999999999998864

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>KOG0733|consensus

Probab=96.73  E-value=0.01  Score=64.83  Aligned_cols=27  Identities=37%  Similarity=0.540  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+.+.+||+||||||.|+..+..++.
T Consensus       222 PprGvLlHGPPGCGKT~lA~AiAgel~  248 (802)
T KOG0733|consen  222 PPRGVLLHGPPGCGKTSLANAIAGELG  248 (802)
T ss_pred             CCCceeeeCCCCccHHHHHHHHhhhcC
Confidence            457789999999999999999997764

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.70  E-value=0.0089  Score=60.10  Aligned_cols=42  Identities=29%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .++....+|.+..    ....+.+.++|+||+|||.|+..++.++.
T Consensus        83 ~al~~a~~~~~~~----~~~~~~~~l~G~~GtGKThLa~aia~~l~  124 (244)
T PRK07952         83 NALSKARQYVEEF----DGNIASFIFSGKPGTGKNHLAAAICNELL  124 (244)
T ss_pred             HHHHHHHHHHHhh----ccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3445556676642    11235799999999999999999997764

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.62  E-value=0.024  Score=65.09  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=32.0

Q ss_pred             hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+++..|+.... .....++++.|+|+||+|||+++..+...+.
T Consensus        93 i~~l~~~l~~~~-~~~~~~~illL~GP~GsGKTTl~~~la~~l~  135 (637)
T TIGR00602        93 IEEVETWLKAQV-LENAPKRILLITGPSGCGKSTTIKILSKELG  135 (637)
T ss_pred             HHHHHHHHHhcc-cccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence            346889988631 1122456899999999999999999986654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=96.57  E-value=0.03  Score=54.80  Aligned_cols=191  Identities=17%  Similarity=0.158  Sum_probs=100.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS  115 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~  115 (978)
                      +.+++.++|.-|||||++.+.+...+-.          +. ++--+   -+.-+-+...++..++.+|..+ |...-   
T Consensus        50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~----------d~-~~~v~---i~~~~~s~~~~~~ai~~~l~~~-p~~~~---  111 (269)
T COG3267          50 GQGILAVTGEVGSGKTVLRRALLASLNE----------DQ-VAVVV---IDKPTLSDATLLEAIVADLESQ-PKVNV---  111 (269)
T ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCC----------Cc-eEEEE---ecCcchhHHHHHHHHHHHhccC-ccchh---
Confidence            4569999999999999999955533321          22 22222   3455667778888999999873 22100   


Q ss_pred             hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEe-ccccccccCCCcCCCcchhhHHHHHHhccCC
Q psy9384         116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVD-SIDETHVTNKKIYSDKATCSIADLLARNHHL  194 (978)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviD-aLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~  194 (978)
                                        ....++..+.|.+....   ...+++++|| |=|+-.         +.++.++.|-... ..
T Consensus       112 ------------------~~~~e~~~~~L~al~~~---g~r~v~l~vdEah~L~~---------~~le~Lrll~nl~-~~  160 (269)
T COG3267         112 ------------------NAVLEQIDRELAALVKK---GKRPVVLMVDEAHDLND---------SALEALRLLTNLE-ED  160 (269)
T ss_pred             ------------------HHHHHHHHHHHHHHHHh---CCCCeEEeehhHhhhCh---------hHHHHHHHHHhhc-cc
Confidence                              00112222233322222   2333555554 434432         2234444433322 23


Q ss_pred             CCCceeeeeeecccccchhhc-----ccCccc--cccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHh
Q psy9384         195 FPPWLFLFCTVRRQSKSIKKM-----FLGFHK--LSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHI  267 (978)
Q Consensus       195 ~~~~~~~~~~sr~~~~~i~~~-----~~~~~~--i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~  267 (978)
                      ......+++...|....-.++     +...-.  +.+..    -+...+..|++.++...-   ...+=..++.+..+..
T Consensus       161 ~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P----~~~~~t~~yl~~~Le~a~---~~~~l~~~~a~~~i~~  233 (269)
T COG3267         161 SSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP----LTEAETGLYLRHRLEGAG---LPEPLFSDDALLLIHE  233 (269)
T ss_pred             ccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC----cChHHHHHHHHHHHhccC---CCcccCChhHHHHHHH
Confidence            333467788776654321111     111111  33332    244569999999998651   1122234557778888


Q ss_pred             hchhhHHHHHHHHhh
Q psy9384         268 KSNGCFLYLERVLDG  282 (978)
Q Consensus       268 ~a~g~flw~~~~~~~  282 (978)
                      +++|.+.-+..++..
T Consensus       234 ~sqg~P~lin~~~~~  248 (269)
T COG3267         234 ASQGIPRLINNLATL  248 (269)
T ss_pred             HhccchHHHHHHHHH
Confidence            999977666555443

>KOG1970|consensus

Probab=96.56  E-value=0.028  Score=60.93  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             HHHHHHh-----cCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          21 KLVHCLE-----SKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        21 ~~~~wl~-----~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++++|+.     .    +.-++++|+|+|++||||||....+...+-
T Consensus        93 eVk~WL~~~~~~~----~~l~~~iLLltGPsGcGKSTtvkvLskelg  135 (634)
T KOG1970|consen   93 EVKQWLKQVAEFT----PKLGSRILLLTGPSGCGKSTTVKVLSKELG  135 (634)
T ss_pred             HHHHHHHHHHHhc----cCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence            5789998     4    334778999999999999999988875543

>PF13245 AAA_19: Part of AAA domain

Probab=96.54  E-value=0.0014  Score=52.21  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++++.|.|+||+|||+++...+.++
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35788999999999997777776554

>KOG2228|consensus

Probab=96.48  E-value=0.0048  Score=62.28  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL   99 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl   99 (978)
                      +++.+|+.++-  .-|.+.=+.+.|+.|+|||+|..++... .++.       +...+.   + +-++.-++-.-++++|
T Consensus        34 ~~l~~~lkqt~--~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~-------~E~~l~---v-~Lng~~~~dk~al~~I   99 (408)
T KOG2228|consen   34 KHLSELLKQTI--LHGESNSVIIIGPRGSGKTILIDTRLSD-IQEN-------GENFLL---V-RLNGELQTDKIALKGI   99 (408)
T ss_pred             HHHHHHHHHHH--HhcCCCceEEEccCCCCceEeeHHHHhh-HHhc-------CCeEEE---E-EECccchhhHHHHHHH
Confidence            46888888743  4455667889999999999999998754 1111       111111   1 2344444456689999


Q ss_pred             HHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcC-CCCCCcEEEEEeccccccccCCCcCCC
Q psy9384         100 VEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQI-KHPKTSYFILVDSIDETHVTNKKIYSD  178 (978)
Q Consensus       100 ~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~iviDaLDE~~~~~~~~~~~  178 (978)
                      .+||........            .       ..-++.+.+..+|. .|.+- ..+..+|++|+|-.|=.-.++    +.
T Consensus       100 ~rql~~e~~~~~------------k-------~~gsfte~l~~lL~-~L~~~~~~t~~~ViFIldEfDlf~~h~----rQ  155 (408)
T KOG2228|consen  100 TRQLALELNRIV------------K-------SFGSFTENLSKLLE-ALKKGDETTSGKVIFILDEFDLFAPHS----RQ  155 (408)
T ss_pred             HHHHHHHHhhhh------------e-------eecccchhHHHHHH-HHhcCCCCCCceEEEEeehhhccccch----hh
Confidence            999987532210            0       00111223333333 22222 234557899988888765443    33


Q ss_pred             cchhhHHHHHH
Q psy9384         179 KATCSIADLLA  189 (978)
Q Consensus       179 ~~~~~l~~l~~  189 (978)
                      .++-.+.++.+
T Consensus       156 tllYnlfDisq  166 (408)
T KOG2228|consen  156 TLLYNLFDISQ  166 (408)
T ss_pred             HHHHHHHHHHh
Confidence            34444444444

>PRK06526 transposase; Provisional

Probab=96.46  E-value=0.0068  Score=61.63  Aligned_cols=31  Identities=23%  Similarity=0.480  Sum_probs=24.7

Q ss_pred             HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|++.        ..-+.|+|+||+|||+|+..+...+
T Consensus        92 ~~fi~~--------~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         92 LDFVTG--------KENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             Cchhhc--------CceEEEEeCCCCchHHHHHHHHHHH
Confidence            367764        2458999999999999999997443

>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins

Probab=96.44  E-value=0.0017  Score=66.92  Aligned_cols=28  Identities=36%  Similarity=0.531  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+..|.|.|.||+|||+++-.+.+.++.
T Consensus         9 ~G~TLLIKG~PGTGKTtfaLelL~~l~~   36 (484)
T PF07088_consen    9 PGQTLLIKGEPGTGKTTFALELLNSLKD   36 (484)
T ss_pred             CCcEEEEecCCCCCceeeehhhHHHHhc
Confidence            5678999999999999999999877764

GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.43  E-value=0.014  Score=57.33  Aligned_cols=56  Identities=13%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccC
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLG  218 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~  218 (978)
                      ..+++|++|=|-   .++    .+.--+.|+.++.......|.+|.+..||.|.- -++..+..
T Consensus       105 ~~kFIlf~DDLs---Fe~----~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH-Lv~E~~~d  160 (249)
T PF05673_consen  105 PYKFILFCDDLS---FEE----GDTEYKALKSVLEGGLEARPDNVLIYATSNRRH-LVPESFSD  160 (249)
T ss_pred             CCCEEEEecCCC---CCC----CcHHHHHHHHHhcCccccCCCcEEEEEecchhh-ccchhhhh
Confidence            357999999654   111    333357899999999888999999999995533 25555543

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.42  E-value=0.004  Score=67.25  Aligned_cols=41  Identities=20%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             ccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          14 CREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        14 ~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.+..++.+...+..        .+.+.++|+||+|||+++..+...+.
T Consensus       179 i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        179 IPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             CCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            344455566666553        35678899999999999999987664

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.41  E-value=0.0088  Score=60.50  Aligned_cols=105  Identities=18%  Similarity=0.245  Sum_probs=53.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhh-ccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLR-KKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAF  114 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~-~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~  114 (978)
                      .+++..|.|+||+|||+|+..++-.-.        . . +..+.|+=+.  .    ++    +.++.++-+-.-++.+..
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--------~-~~ge~vlyvs~e--e----~~----~~l~~~~~s~g~d~~~~~   78 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGL--------K-NFGEKVLYVSFE--E----PP----EELIENMKSFGWDLEEYE   78 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH--------H-HHT--EEEEESS--S-----H----HHHHHHHHTTTS-HHHHH
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhh--------h-hcCCcEEEEEec--C----CH----HHHHHHHHHcCCcHHHHh
Confidence            567899999999999999998773211        1 1 3445554433  2    22    555556555443444444


Q ss_pred             Hh-hh---cchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384         115 ST-IV---EDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus       115 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                      .. ..   +.........     ....+.+...+...+.+.    +.-.+|||.|...
T Consensus        79 ~~g~l~~~d~~~~~~~~~-----~~~~~~l~~~i~~~i~~~----~~~~vVIDsls~l  127 (226)
T PF06745_consen   79 DSGKLKIIDAFPERIGWS-----PNDLEELLSKIREAIEEL----KPDRVVIDSLSAL  127 (226)
T ss_dssp             HTTSEEEEESSGGGST-T-----SCCHHHHHHHHHHHHHHH----TSSEEEEETHHHH
T ss_pred             hcCCEEEEeccccccccc-----ccCHHHHHHHHHHHHHhc----CCCEEEEECHHHH
Confidence            33 11   1100000000     111233444444444442    2369999999999

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.37  E-value=0.0021  Score=50.31  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|+.|.||+|||+++..+.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998664

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=96.35  E-value=0.064  Score=56.59  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=34.5

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..|-+-+.+.+.+.+...+     -...+.++|++|+||++++..++..+.
T Consensus         6 iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~ll   51 (314)
T PRK07399          6 LIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLL   51 (314)
T ss_pred             hCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            3455556667777777532     346899999999999999999886654

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.34  E-value=0.01  Score=67.67  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.+-..+.+...+..+      ...-++|+|+||+|||+++..+.+.
T Consensus        67 iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        67 IIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             eeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence            566666666666666543      3456799999999999999999754

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.32  E-value=0.0018  Score=59.37  Aligned_cols=25  Identities=32%  Similarity=0.242  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .++||+|-||||||||+..+...|.
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~   27 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLF   27 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999987764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK08116 hypothetical protein; Validated

Probab=96.28  E-value=0.01  Score=61.06  Aligned_cols=26  Identities=38%  Similarity=0.428  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +..++|+|+||+|||.|+..|..++.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~  139 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELI  139 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            45699999999999999999987654

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=96.26  E-value=0.058  Score=57.50  Aligned_cols=118  Identities=13%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             cEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcc-----cC--cc
Q psy9384         157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMF-----LG--FH  220 (978)
Q Consensus       157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~-----~~--~~  220 (978)
                      .-+++||.+|+.+.+-    +.    .|.+++....       ...+..+++|++|++......  ..|     ..  ..
T Consensus        94 gGtL~Ldei~~L~~~~----Q~----~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~  165 (329)
T TIGR02974        94 GGTLFLDELATASLLV----QE----KLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFD  165 (329)
T ss_pred             CCEEEeCChHhCCHHH----HH----HHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcch
Confidence            3589999999997432    22    3334443221       123456899999987653211  112     11  22


Q ss_pred             ccccccccchhhhhHHHHHHHHHhcCchHHHhhc--CcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384         221 KLSLDDLRKSHVIRDMQQYILLRLASEESLRVHM--NRDTAEMLNQLHIKS-NGCFLYLERVLDGIS  284 (978)
Q Consensus       221 ~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~--~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~  284 (978)
                      .|.+..++  +..+||...+..-+.+........  .....+..+.|.... -|+..=++-+++.+.
T Consensus       166 ~i~lPpLR--eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~  230 (329)
T TIGR02974       166 VITLPPLR--ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSV  230 (329)
T ss_pred             hcCCCchh--hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence            45554333  345788887776665432221211  345566666666654 777766666665543

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.24  E-value=0.027  Score=67.46  Aligned_cols=47  Identities=23%  Similarity=0.459  Sum_probs=35.5

Q ss_pred             CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -..++||+-..+++.+-|....     .++ ..|+|+||+|||+++..++..+
T Consensus       181 l~~~igr~~ei~~~~~~L~~~~-----~~n-~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       181 IDPLIGREDELERTIQVLCRRK-----KNN-PLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCcccCcHHHHHHHHHHHhcCC-----CCc-eEEECCCCCCHHHHHHHHHHHH
Confidence            3468899888888777666531     333 4688999999999999998654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.23  E-value=0.037  Score=66.88  Aligned_cols=49  Identities=18%  Similarity=0.388  Sum_probs=37.8

Q ss_pred             CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..-..++||+-.+.++.+++...+     .++ ..|+|+||+|||+++..+...+
T Consensus       184 ~~ld~~iGr~~ei~~~i~~l~r~~-----~~n-~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       184 GKIDPVLGRDDEIRQMIDILLRRR-----QNN-PILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             CCCCcccCCHHHHHHHHHHHhcCC-----cCc-eeEECCCCCCHHHHHHHHHHHH
Confidence            344578999988888888887642     333 4599999999999999998554

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.22  E-value=0.0091  Score=62.97  Aligned_cols=61  Identities=21%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSS  106 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~  106 (978)
                      ..+-..|.|+||+|||+|+..++..+...       .++..+.|.+..   +...++..++++++.++...
T Consensus       132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~-------~~dv~~vv~lIg---ER~~EV~df~~~i~~~Vvas  192 (380)
T PRK12608        132 KGQRGLIVAPPRAGKTVLLQQIAAAVAAN-------HPEVHLMVLLID---ERPEEVTDMRRSVKGEVYAS  192 (380)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEEec---CCCCCHHHHHHHHhhhEEee
Confidence            44556899999999999999988665321       112223333333   34457789999999887764

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.20  E-value=0.017  Score=68.82  Aligned_cols=52  Identities=19%  Similarity=0.272  Sum_probs=36.3

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +...|-+-+-+++.+|+............++++.|+||+|||++++.+...+
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l  373 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT  373 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4455656666678888874211122245689999999999999999998543

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.15  E-value=0.0022  Score=55.59  Aligned_cols=23  Identities=43%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +||+|+||+|||+++..++..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            59999999999999999885543

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.13  E-value=0.026  Score=64.41  Aligned_cols=24  Identities=42%  Similarity=0.715  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+-++|+|+||||||+|++.+...
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~  111 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGE  111 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999999743

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0738|consensus

Probab=96.10  E-value=0.023  Score=58.71  Aligned_cols=69  Identities=17%  Similarity=0.318  Sum_probs=45.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC---CCCccCHHHHHHHHHHHHhcCC-Cc--hh
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY---DLATFSVQNFIQSLVEQFSSSE-SP--FS  111 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~---~~~~~~~~~~l~sl~~QL~~~~-~~--~~  111 (978)
                      +-+.+.|+||+|||.|++.|.....              ..||--...   ..-+...+.++|- ++.|+... |+  +.
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~--------------tTFFNVSsstltSKwRGeSEKlvRl-LFemARfyAPStIFi  310 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECG--------------TTFFNVSSSTLTSKWRGESEKLVRL-LFEMARFYAPSTIFI  310 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhc--------------CeEEEechhhhhhhhccchHHHHHH-HHHHHHHhCCceeeh
Confidence            4577899999999999999984432              333333322   3456677788874 55666643 33  56


Q ss_pred             HHHHhhhcch
Q psy9384         112 EAFSTIVEDE  121 (978)
Q Consensus       112 ~~~~~~~~~~  121 (978)
                      +.+..++.+.
T Consensus       311 DEIDslcs~R  320 (491)
T KOG0738|consen  311 DEIDSLCSQR  320 (491)
T ss_pred             hhHHHHHhcC
Confidence            7777777654

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=96.10  E-value=0.014  Score=53.51  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.-++|+|.||+||+.++.++-..
T Consensus        20 ~~~pvli~GE~GtGK~~~A~~lh~~   44 (138)
T PF14532_consen   20 SSSPVLITGEPGTGKSLLARALHRY   44 (138)
T ss_dssp             SSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred             CCCcEEEEcCCCCCHHHHHHHHHhh
Confidence            4467899999999999999988644

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.10  E-value=0.027  Score=61.80  Aligned_cols=25  Identities=36%  Similarity=0.668  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.|+|+||||||++++.+...+
T Consensus       217 p~gVLL~GPPGTGKT~LAraIA~el  241 (438)
T PTZ00361        217 PKGVILYGPPGTGKTLLAKAVANET  241 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3457789999999999999998654

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.08  E-value=0.016  Score=63.19  Aligned_cols=26  Identities=38%  Similarity=0.692  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+.|+|+||+|||+++..+...+.
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCC
Confidence            34588999999999999999986653

Many proteins may score above the trusted cutoff because an internal

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.06  E-value=0.0049  Score=69.16  Aligned_cols=43  Identities=26%  Similarity=0.187  Sum_probs=33.2

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +++++|++..- ......++|.|+|+|||||||.+..+..++.-
T Consensus        29 ~eV~~wl~~~~-~~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   29 EEVRSWLEEMF-SGSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             HHHHHHHHHHh-ccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46789998631 12334679999999999999999999877654

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.05  E-value=0.026  Score=60.27  Aligned_cols=47  Identities=17%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384           9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus         9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...+.|+.-.++++.+-+..-    ...+.-++|+|.+|+||++++..|-.
T Consensus         5 ~~~liG~S~~~~~~~~~i~~~----a~~~~pVlI~GE~GtGK~~lA~~iH~   51 (326)
T PRK11608          5 KDNLLGEANSFLEVLEQVSRL----APLDKPVLIIGERGTGKELIASRLHY   51 (326)
T ss_pred             cCccEECCHHHHHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            345788877776654444431    12446799999999999999998863

>KOG1969|consensus

Probab=96.05  E-value=0.013  Score=65.50  Aligned_cols=28  Identities=39%  Similarity=0.420  Sum_probs=24.7

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          33 KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..++++|.++|+||-||||||..|..+
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkq  349 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQ  349 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHh
Confidence            5567899999999999999999999854

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.04  E-value=0.005  Score=55.27  Aligned_cols=23  Identities=43%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..|.|+|||||||+++.+.+++.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhC
Confidence            56899999999999999998864

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.01  E-value=0.03  Score=67.93  Aligned_cols=45  Identities=27%  Similarity=0.479  Sum_probs=35.8

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+||+--.+++.+||...+     .+++ .|.|+||+|||+++..++..+
T Consensus       180 ~~igr~~ei~~~~~~L~r~~-----~~n~-lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        180 PVIGREKEIERVIQILGRRT-----KNNP-ILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             CCCCcHHHHHHHHHHHcccc-----cCCe-EEECCCCCCHHHHHHHHHHHH
Confidence            45788888888999988642     4444 699999999999999887554

>CHL00176 ftsH cell division protein; Validated

Probab=96.00  E-value=0.056  Score=62.66  Aligned_cols=24  Identities=46%  Similarity=0.728  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+-+.|+|+||+|||+|++.+...
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e  239 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGE  239 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999743

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=95.98  E-value=0.0041  Score=56.74  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++|++|-+|+|||||+..+-+.|.
T Consensus        22 ~~~viW~TGLSGsGKSTiA~ale~~L~   48 (197)
T COG0529          22 KGAVIWFTGLSGSGKSTIANALEEKLF   48 (197)
T ss_pred             CCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            557999999999999999999986664

>TIGR01351 adk adenylate kinases

Probab=95.97  E-value=0.021  Score=56.81  Aligned_cols=21  Identities=43%  Similarity=0.650  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|.|+|||||||++..+.+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~   22 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEK   22 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999854

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>KOG0743|consensus

Probab=95.94  E-value=0.0059  Score=64.69  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=28.5

Q ss_pred             HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++|...-   ...-.+...|+|+||+|||++.+.++.+|.
T Consensus       224 k~~Ykrv---GkawKRGYLLYGPPGTGKSS~IaAmAn~L~  260 (457)
T KOG0743|consen  224 KDFYKRV---GKAWKRGYLLYGPPGTGKSSFIAAMANYLN  260 (457)
T ss_pred             chHHHhc---CcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence            3555542   334567899999999999999999997764

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.94  E-value=0.0041  Score=55.81  Aligned_cols=35  Identities=31%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQ   83 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~   83 (978)
                      +.|+|.||+||||++..+++.|..         .+..+.=|++.
T Consensus         8 i~ITG~PGvGKtTl~~ki~e~L~~---------~g~kvgGf~t~   42 (179)
T COG1618           8 IFITGRPGVGKTTLVLKIAEKLRE---------KGYKVGGFITP   42 (179)
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHh---------cCceeeeEEee
Confidence            679999999999999999988764         24556666665

>PRK06762 hypothetical protein; Provisional

Probab=95.92  E-value=0.0048  Score=58.91  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++||+|.|||||||++..+.+++
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998654

>KOG2505|consensus

Probab=95.91  E-value=0.0082  Score=63.24  Aligned_cols=41  Identities=32%  Similarity=0.639  Sum_probs=39.9

Q ss_pred             CchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHH
Q psy9384         884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAA  924 (978)
Q Consensus       884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~  924 (978)
                      .|+||+|+..|.-.+|.+||+.|+|+.++|..|+||.+.+.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            89999999999999999999999999999999999999887

>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria

Probab=95.90  E-value=0.037  Score=59.71  Aligned_cols=84  Identities=18%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc--
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT--   89 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~--   89 (978)
                      =+||+-..+.+.+.++.=   ..|++.+.+|.|.-|+|||++..++.+.-.         ..+.++++.-++.+.+-.  
T Consensus        27 ~VGr~~e~~~l~~~l~~v---~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~---------~~~fvvs~v~ls~e~~lh~~   94 (416)
T PF10923_consen   27 AVGREREIEALDRDLDRV---ADGGSSFKFIRGEYGSGKTFFLRLIRERAL---------EKGFVVSEVDLSPERPLHGT   94 (416)
T ss_pred             eechHHHHHHHHHHHHHH---hCCCCeEEEEEeCCCCcHHHHHHHHHHHHH---------HcCCEEEEEecCCCcccccc
Confidence            368888888887777642   346788999999999999999999975422         247778887777643222  


Q ss_pred             -cCHHHHHHHHHHHHhcCC
Q psy9384          90 -FSVQNFIQSLVEQFSSSE  107 (978)
Q Consensus        90 -~~~~~~l~sl~~QL~~~~  107 (978)
                       .....+.|.|+.+|....
T Consensus        95 ~g~~~~~Yr~l~~nL~t~~  113 (416)
T PF10923_consen   95 GGQLEALYRELMRNLSTKT  113 (416)
T ss_pred             cccHHHHHHHHHHhcCCCC
Confidence             377888888888888644

Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.

>PLN02674 adenylate kinase

Probab=95.89  E-value=0.044  Score=54.91  Aligned_cols=41  Identities=24%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .|++.+..+-+...   . ....-++|-|+|||||||+++.+.++
T Consensus        14 ~~~~~~~~~~~~~~---~-~~~~~i~l~G~PGsGKgT~a~~La~~   54 (244)
T PLN02674         14 VDLMTELLRRMKCS---S-KPDKRLILIGPPGSGKGTQSPIIKDE   54 (244)
T ss_pred             HHHHHHHHHHHhhc---c-ccCceEEEECCCCCCHHHHHHHHHHH
Confidence            45666554444321   1 12345789999999999999999854

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.032  Score=62.69  Aligned_cols=47  Identities=26%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +-+-+++-++|.-..-++.-...+|++.|+||.|||.|...|.+.+.
T Consensus       329 ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~  375 (782)
T COG0466         329 EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG  375 (782)
T ss_pred             hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence            33344554554432111333668999999999999999999996654

>KOG0652|consensus

Probab=95.87  E-value=0.057  Score=52.33  Aligned_cols=56  Identities=14%  Similarity=0.220  Sum_probs=35.9

Q ss_pred             CCCcEEEEEecccccccc---CCCcCCCcchhhHHHHHHhccCCCC-Cceeeeeeecccc
Q psy9384         154 PKTSYFILVDSIDETHVT---NKKIYSDKATCSIADLLARNHHLFP-PWLFLFCTVRRQS  209 (978)
Q Consensus       154 ~~~~~~iviDaLDE~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~sr~~~  209 (978)
                      ...+.+|+||-||-+...   +...--+++-+...+++.+.....| ..+++|..+.|-.
T Consensus       262 EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD  321 (424)
T KOG0652|consen  262 EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD  321 (424)
T ss_pred             ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence            466789999999998542   1111123455667777777654444 4688888887743

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.85  E-value=0.0056  Score=54.80  Aligned_cols=22  Identities=50%  Similarity=0.690  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..|.|.|||||||+++.+.+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999854

...

>KOG0731|consensus

Probab=95.81  E-value=0.021  Score=65.47  Aligned_cols=60  Identities=25%  Similarity=0.318  Sum_probs=40.5

Q ss_pred             CcccccccchH---HHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384          10 KKFFCREWAFV---KLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQ   83 (978)
Q Consensus        10 ~~f~~r~w~~~---~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~   83 (978)
                      +.+.|.+-.-+   +|.++|.++..-   ...-.+...|+|+||||||-||+.+.              +.-.|.||++.
T Consensus       311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiA--------------GEAgVPF~svS  376 (774)
T KOG0731|consen  311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIA--------------GEAGVPFFSVS  376 (774)
T ss_pred             ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHh--------------cccCCceeeec
Confidence            44566655554   456666654211   22235678899999999999999998              34467777766

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=95.79  E-value=0.08  Score=55.62  Aligned_cols=97  Identities=10%  Similarity=0.095  Sum_probs=54.3

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      +.=++|||..|....+.        ...|.+.+.    .-|+++.+|+++.....-+.-..+.+..+.+....    .++
T Consensus       113 ~~kV~iI~~ae~m~~~A--------aNaLLKtLE----EPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~----~~~  176 (319)
T PRK08769        113 IAQVVIVDPADAINRAA--------CNALLKTLE----EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPP----AHE  176 (319)
T ss_pred             CcEEEEeccHhhhCHHH--------HHHHHHHhh----CCCCCCeEEEEECChhhCchHHHhhheEeeCCCcC----HHH
Confidence            44588888888886432        123444454    33456666766655443333333455566664322    367


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHH
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVL  280 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~  280 (978)
                      +..++.++ .           ..+.-...++..++|.++.|.-.+
T Consensus       177 ~~~~L~~~-~-----------~~~~~a~~~~~l~~G~p~~A~~~~  209 (319)
T PRK08769        177 ALAWLLAQ-G-----------VSERAAQEALDAARGHPGLAAQWL  209 (319)
T ss_pred             HHHHHHHc-C-----------CChHHHHHHHHHcCCCHHHHHHHh
Confidence            77777642 1           111123456788899988775443

>KOG3079|consensus

Probab=95.78  E-value=0.038  Score=51.04  Aligned_cols=91  Identities=22%  Similarity=0.321  Sum_probs=53.9

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcC-CCchh
Q psy9384          33 KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSS-ESPFS  111 (978)
Q Consensus        33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~-~~~~~  111 (978)
                      +.....+.|+-|+|||||=|.+..|++..              .  |--        -|+-.+||.-    ..+ ....-
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky--------------~--ftH--------lSaGdLLR~E----~~~~gse~g   55 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKY--------------G--FTH--------LSAGDLLRAE----IASAGSERG   55 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHc--------------C--cee--------ecHHHHHHHH----HccccChHH
Confidence            34467899999999999999999999542              1  111        1333444443    333 33344


Q ss_pred             HHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384         112 EAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI  165 (978)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL  165 (978)
                      ..+++......+.           +.+....+|.+.+.+......   ++|||.
T Consensus        56 ~~I~~~i~~G~iV-----------P~ei~~~LL~~am~~~~~~~~---fLIDGy   95 (195)
T KOG3079|consen   56 ALIKEIIKNGDLV-----------PVEITLSLLEEAMRSSGDSNG---FLIDGY   95 (195)
T ss_pred             HHHHHHHHcCCcC-----------cHHHHHHHHHHHHHhcCCCCe---EEecCC
Confidence            4455544432222           224566677777766543233   899996

>TIGR01817 nifA Nif-specific regulatory protein

Probab=95.76  E-value=0.099  Score=60.49  Aligned_cols=215  Identities=15%  Similarity=0.132  Sum_probs=107.8

Q ss_pred             CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384           8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL   87 (978)
Q Consensus         8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~   87 (978)
                      ....+.|+.-.++++.+-+..-    .....-++|+|.+|+||++++..|-.....         ....+..+-|..-  
T Consensus       194 ~~~~liG~s~~~~~~~~~~~~~----a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r---------~~~pfv~i~c~~~--  258 (534)
T TIGR01817       194 KEDGIIGKSPAMRQVVDQARVV----ARSNSTVLLRGESGTGKELIAKAIHYLSPR---------AKRPFVKVNCAAL--  258 (534)
T ss_pred             ccCceEECCHHHHHHHHHHHHH----hCcCCCEEEECCCCccHHHHHHHHHHhCCC---------CCCCeEEeecCCC--
Confidence            3456778777666654444431    114456899999999999999999755321         1333444455422  


Q ss_pred             CccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384          88 ATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE  167 (978)
Q Consensus        88 ~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE  167 (978)
                          +...+.+.   |....+.       .+.......        .   ..        + +   ....-+++||.+|+
T Consensus       259 ----~~~~~~~~---lfg~~~~-------~~~~~~~~~--------~---g~--------~-~---~a~~GtL~ldei~~  301 (534)
T TIGR01817       259 ----SETLLESE---LFGHEKG-------AFTGAIAQR--------K---GR--------F-E---LADGGTLFLDEIGE  301 (534)
T ss_pred             ----CHHHHHHH---HcCCCCC-------ccCCCCcCC--------C---Cc--------c-c---ccCCCeEEEechhh
Confidence                11223322   2221110       000000000        0   00        0 0   11234789999999


Q ss_pred             ccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcccC-------ccccccccccchh
Q psy9384         168 THVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFLG-------FHKLSLDDLRKSH  231 (978)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~~-------~~~i~l~~~~~~~  231 (978)
                      .+..-    +.    .|.+++....       ...+..+++|++|.+......  ..|+.       ...|.+..++.  
T Consensus       302 L~~~~----Q~----~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLre--  371 (534)
T TIGR01817       302 ISPAF----QA----KLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRE--  371 (534)
T ss_pred             CCHHH----HH----HHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCccc--
Confidence            87431    22    3444443221       112235889998877653321  11211       12344443332  


Q ss_pred             hhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhh-chhhHHHHHHHHhhhh
Q psy9384         232 VIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIK-SNGCFLYLERVLDGIS  284 (978)
Q Consensus       232 ~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~-a~g~flw~~~~~~~l~  284 (978)
                      ..+||...+..-+.+.............+..+.|... ..|+..=++-+++.+.
T Consensus       372 R~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~  425 (534)
T TIGR01817       372 RREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTA  425 (534)
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence            3478877777666544322121234555666666665 3777776666666543

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.74  E-value=0.016  Score=61.02  Aligned_cols=77  Identities=16%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchh-----hhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCc
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFS-----QQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESP  109 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~-----~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~  109 (978)
                      +...-+.|+|.+|||||++..+++.+......-     ....--+..-.|.+.. ..+.+-..-...+.++.++.....+
T Consensus        21 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp~a~~~~~~~~~~~~~~-~~~~~~~qP~~a~~~L~~~~~~N~~   99 (309)
T PF10236_consen   21 SKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVPSAQDWVNGTTDYAPSP-YNPGLYDQPMYAAKWLKKFLKANEE   99 (309)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcCCHHHHhhCCeeEeeCC-CCCCeeecHHHHHHHHHHHHHHhHH
Confidence            356678999999999999999998553221000     0000001111222322 1555666666777788888776544


Q ss_pred             hhH
Q psy9384         110 FSE  112 (978)
Q Consensus       110 ~~~  112 (978)
                      +.+
T Consensus       100 ~L~  102 (309)
T PF10236_consen  100 LLK  102 (309)
T ss_pred             HHH
Confidence            333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.73  E-value=0.03  Score=57.45  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=36.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS  105 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~  105 (978)
                      .+.+..|.|.||+|||+++..++.+....        .+..+.||-+.  .    ++..+++.++.+...
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~E--~----~~~~~~~r~~~~~~~   67 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSLE--M----SKEQLLQRLLASESG   67 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeCC--C----CHHHHHHHHHHHhcC
Confidence            44688999999999999999998554321        14456655533  2    555666666555443

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=95.72  E-value=0.03  Score=52.36  Aligned_cols=18  Identities=50%  Similarity=0.768  Sum_probs=16.4

Q ss_pred             EEcCCCCcHHHHHHHHhc
Q psy9384          42 IIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        42 l~G~pG~GKS~l~~~ii~   59 (978)
                      |.|+|||||||++..+.+
T Consensus         1 i~G~PgsGK~t~~~~la~   18 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAK   18 (151)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHH
Confidence            579999999999999983

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=95.71  E-value=0.031  Score=59.92  Aligned_cols=28  Identities=25%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      ..+.|+|+|++|+|||+||....+.+..
T Consensus        61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence            5678999999999999999999977654

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK13531 regulatory ATPase RavA; Provisional

Probab=95.70  E-value=0.023  Score=62.16  Aligned_cols=44  Identities=18%  Similarity=0.353  Sum_probs=34.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|.||+-+.+....-+.        .++-++|.|+||+|||+|+..+....
T Consensus        20 ~~i~gre~vI~lll~aal--------ag~hVLL~GpPGTGKT~LAraLa~~~   63 (498)
T PRK13531         20 KGLYERSHAIRLCLLAAL--------SGESVFLLGPPGIAKSLIARRLKFAF   63 (498)
T ss_pred             hhccCcHHHHHHHHHHHc--------cCCCEEEECCCChhHHHHHHHHHHHh
Confidence            568888888887655555        23568999999999999999998543

>PRK08233 hypothetical protein; Provisional

Probab=95.70  E-value=0.0077  Score=58.60  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+++|.|.||||||||+..+.+++.
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            36899999999999999999998764

>PRK06851 hypothetical protein; Provisional

Probab=95.66  E-value=0.0077  Score=63.96  Aligned_cols=42  Identities=33%  Similarity=0.469  Sum_probs=33.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD   86 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~   86 (978)
                      .++++.|+|.||+|||+|++.+++.+..         ....|-+|+|..+.
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~---------~g~~Ve~~~~~~d~   70 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLE---------KGYDVEFLHCSSDN   70 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHH---------cCCeEEEEEcCCCC
Confidence            5689999999999999999999976532         25678888887543

>smart00248 ANK ankyrin repeats

Probab=95.64  E-value=0.019  Score=35.42  Aligned_cols=27  Identities=37%  Similarity=0.582  Sum_probs=18.6

Q ss_pred             CchHHHHHHhCCHHHHHHHHHcCCCCC
Q psy9384         884 GEKISIAAQEGHEDCVRLLLHYGADPK  910 (978)
Q Consensus       884 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~  910 (978)
                      .||+++|+..++.+++++|+++|.+++
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            667777777777777777777666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0726|consensus

Probab=95.59  E-value=0.064  Score=53.05  Aligned_cols=25  Identities=36%  Similarity=0.651  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+.++|.||+|||-|++.|...
T Consensus       218 pPKGVIlyG~PGTGKTLLAKAVANq  242 (440)
T KOG0726|consen  218 PPKGVILYGEPGTGKTLLAKAVANQ  242 (440)
T ss_pred             CCCeeEEeCCCCCchhHHHHHHhcc
Confidence            4567899999999999999999743

>KOG3347|consensus

Probab=95.58  E-value=0.0071  Score=53.26  Aligned_cols=23  Identities=35%  Similarity=0.638  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .-+.|+|.||+||||+++.+.+.
T Consensus         8 PNILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHH
Confidence            44789999999999999999844

>KOG0730|consensus

Probab=95.53  E-value=0.069  Score=59.46  Aligned_cols=148  Identities=17%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHH
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAF  114 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~  114 (978)
                      ...+.+.++|+||+|||.++..|.+.               .-+|+|.-.       ...++++.+    ..        
T Consensus       216 ~~prg~Ll~gppg~Gkt~l~~aVa~e---------------~~a~~~~i~-------~peli~k~~----gE--------  261 (693)
T KOG0730|consen  216 KPPRGLLLYGPPGTGKTFLVRAVANE---------------YGAFLFLIN-------GPELISKFP----GE--------  261 (693)
T ss_pred             CCCCCccccCCCCCChHHHHHHHHHH---------------hCceeEecc-------cHHHHHhcc----cc--------
Confidence            35677899999999999999999733               236666441       112222211    11        


Q ss_pred             HhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCC-c-CCCcchhhHHHHHHhcc
Q psy9384         115 STIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKK-I-YSDKATCSIADLLARNH  192 (978)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~-~-~~~~~~~~l~~l~~~~~  192 (978)
                                           ..+.+++.|.++...    ..+.+|+||-||-.-..-.. + ..+.+...+..+.....
T Consensus       262 ---------------------te~~LR~~f~~a~k~----~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~  316 (693)
T KOG0730|consen  262 ---------------------TESNLRKAFAEALKF----QVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK  316 (693)
T ss_pred             ---------------------hHHHHHHHHHHHhcc----CCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc
Confidence                                 112344444443332    33789999999987542101 1 12234455555555442


Q ss_pred             CCCCCceeeeeeecccccchhhccc--Cccc-cccccccchhhhhHHHHHHHHHhc
Q psy9384         193 HLFPPWLFLFCTVRRQSKSIKKMFL--GFHK-LSLDDLRKSHVIRDMQQYILLRLA  245 (978)
Q Consensus       193 ~~~~~~~~~~~~sr~~~~~i~~~~~--~~~~-i~l~~~~~~~~~~Di~~yi~~~l~  245 (978)
                        ...++.++-+++|+. .|...++  .+.. +++ .+..+.-..||-+.+..++.
T Consensus       317 --~~~~vivl~atnrp~-sld~alRRgRfd~ev~I-giP~~~~RldIl~~l~k~~~  368 (693)
T KOG0730|consen  317 --PDAKVIVLAATNRPD-SLDPALRRGRFDREVEI-GIPGSDGRLDILRVLTKKMN  368 (693)
T ss_pred             --CcCcEEEEEecCCcc-ccChhhhcCCCcceeee-cCCCchhHHHHHHHHHHhcC
Confidence              124666666666654 3555554  2222 333 23444455677666655555

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.53  E-value=0.0055  Score=57.85  Aligned_cols=23  Identities=43%  Similarity=0.635  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.|+|.||+|||||...+++.++
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhh
Confidence            57999999999999999997764

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR00767 rho transcription termination factor Rho

Probab=95.53  E-value=0.028  Score=59.80  Aligned_cols=62  Identities=21%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcC
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSS  106 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~  106 (978)
                      +.++...|.|+||+|||+|+..+...+...        .....+ +++-. .+...++..++++++..++..
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n--------hfdv~v-~VlLI-gER~~EVtDLqrsIlg~Vvas  227 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN--------HPEVEL-IVLLI-DERPEEVTDMQRSVKGEVVAS  227 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhccc--------CCceEE-EEEEc-CCCCccHHHHHHHhhceEEEe
Confidence            456778999999999999999998776531        011222 22222 223347888888887655543

Members of this family differ in the specificity of RNA binding.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.53  E-value=0.0089  Score=57.51  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++++++|.|||||||+++.+.+.+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3689999999999999999998554

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PLN03077 Protein ECB2; Provisional

Probab=95.49  E-value=7.9  Score=48.18  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=22.3

Q ss_pred             HHHHhCCHHHHHHHHHc-CCCCCCCcccCccHHHHHHH-cChHHHHHHHH
Q psy9384         889 IAAQEGHEDCVRLLLHY-GADPKHSDHCGRNAFRVAAK-SGHETVLRLLK  936 (978)
Q Consensus       889 ~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~A~~-~~~~~~v~~L~  936 (978)
                      .-++.|..+-+.-+++. ...+   |..-+++|.-|+. +|+.++.+...
T Consensus       634 ~l~r~G~~~eA~~~~~~m~~~p---d~~~~~aLl~ac~~~~~~e~~e~~a  680 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKMPITP---DPAVWGALLNACRIHRHVELGELAA  680 (857)
T ss_pred             HHHhCCCHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChHHHHHHH
Confidence            33455666555555543 3333   2233445555554 46676655543

>smart00248 ANK ankyrin repeats

Probab=95.49  E-value=0.022  Score=35.04  Aligned_cols=28  Identities=32%  Similarity=0.535  Sum_probs=22.4

Q ss_pred             CccHHHHHHHcChHHHHHHHHHcCCCCc
Q psy9384         916 GRNAFRVAAKSGHETVLRLLKQYADDSE  943 (978)
Q Consensus       916 g~t~l~~A~~~~~~~~v~~L~~~g~~~~  943 (978)
                      |.||+++|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6688888888888888888888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=95.48  E-value=0.11  Score=55.65  Aligned_cols=42  Identities=14%  Similarity=0.097  Sum_probs=31.5

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.+.+.+..-+...+     -+..+.++|++|+||++++..++..+.
T Consensus        12 ~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~   53 (329)
T PRK08058         12 PVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLF   53 (329)
T ss_pred             HHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHC
Confidence            445566777766532     456788999999999999999986653

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=95.47  E-value=0.2  Score=53.46  Aligned_cols=96  Identities=8%  Similarity=-0.028  Sum_probs=52.4

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhh
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~  234 (978)
                      .+.=++|||.-|-.....        ...|.+++.    .-|+++.+|+++..+..-+.-..+.+..+.+....    .+
T Consensus       107 g~~kV~iI~~ae~m~~~A--------aNaLLKtLE----EPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~----~~  170 (334)
T PRK07993        107 GGAKVVWLPDAALLTDAA--------ANALLKTLE----EPPENTWFFLACREPARLLATLRSRCRLHYLAPPP----EQ  170 (334)
T ss_pred             CCceEEEEcchHhhCHHH--------HHHHHHHhc----CCCCCeEEEEEECChhhChHHHHhccccccCCCCC----HH
Confidence            344577888888876432        224555554    33456666666655443232333445556664322    46


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHH
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLE  277 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~  277 (978)
                      ++..++.++..           ..++-...++.-++|.+..|.
T Consensus       171 ~~~~~L~~~~~-----------~~~~~a~~~~~la~G~~~~Al  202 (334)
T PRK07993        171 YALTWLSREVT-----------MSQDALLAALRLSAGAPGAAL  202 (334)
T ss_pred             HHHHHHHHccC-----------CCHHHHHHHHHHcCCCHHHHH
Confidence            77777764321           111224566778888887664

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.45  E-value=0.0097  Score=55.66  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|++|.||+||||+++.+.+.
T Consensus         1 li~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhh
Confidence            4789999999999999999754

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK00279 adk adenylate kinase; Reviewed

Probab=95.42  E-value=0.024  Score=56.64  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++|.|+|||||||+++.+.+++
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998553

>PTZ00088 adenylate kinase 1; Provisional

Probab=95.41  E-value=0.037  Score=55.24  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|.|+|||||||+++.+.+.
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999854

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.41  E-value=0.022  Score=58.17  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +.++|+...      +..++||.|.||+|||||+..++..+..
T Consensus        94 ~~r~~~~~~------~~~~v~l~G~pGsGKTTLl~~l~~~l~~  130 (290)
T PRK10463         94 RNRARFAAR------KQLVLNLVSSPGSGKTTLLTETLMRLKD  130 (290)
T ss_pred             HHHHHHHhc------CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356777754      5678999999999999999999977653

>KOG0736|consensus

Probab=95.37  E-value=0.26  Score=55.95  Aligned_cols=24  Identities=42%  Similarity=0.747  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.+.+.++|+||+|||-||+.|..
T Consensus       704 kRSGILLYGPPGTGKTLlAKAVAT  727 (953)
T KOG0736|consen  704 KRSGILLYGPPGTGKTLLAKAVAT  727 (953)
T ss_pred             ccceeEEECCCCCchHHHHHHHHh
Confidence            345688999999999999999983

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.36  E-value=0.0097  Score=55.14  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++++.|.|||||||++..+..+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4688999999999999999844

...

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=95.36  E-value=0.088  Score=60.24  Aligned_cols=44  Identities=18%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHh
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      .|.|+.-.+.+..+.+..-    ......++|+|.+|+||+.++..+-
T Consensus       205 ~~ig~s~~~~~~~~~~~~~----A~~~~pvlI~GE~GtGK~~lA~aiH  248 (520)
T PRK10820        205 QIVAVSPKMRQVVEQARKL----AMLDAPLLITGDTGTGKDLLAYACH  248 (520)
T ss_pred             ceeECCHHHHHHHHHHHHH----hCCCCCEEEECCCCccHHHHHHHHH
Confidence            4677766555554444321    1134568899999999999999974

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.34  E-value=0.13  Score=51.34  Aligned_cols=27  Identities=26%  Similarity=0.183  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+...+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=95.32  E-value=0.25  Score=52.03  Aligned_cols=94  Identities=5%  Similarity=0.050  Sum_probs=52.3

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      +.=++|||..|......        ...|.+.+.    .-|+++.++++|..+..-+.-..+.+..+.+....    .++
T Consensus       107 ~~KV~iI~~a~~m~~~A--------aNaLLKtLE----EPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~----~~~  170 (325)
T PRK06871        107 GNKVVYIQGAERLTEAA--------ANALLKTLE----EPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE----EQQ  170 (325)
T ss_pred             CceEEEEechhhhCHHH--------HHHHHHHhc----CCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC----HHH
Confidence            34467788888876432        224445454    34557777777765443333334456667765433    378


Q ss_pred             HHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHH
Q psy9384         236 MQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYL  276 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~  276 (978)
                      +..++..+....           ..-...+...++|.+..|
T Consensus       171 ~~~~L~~~~~~~-----------~~~~~~~~~l~~g~p~~A  200 (325)
T PRK06871        171 ALDWLQAQSSAE-----------ISEILTALRINYGRPLLA  200 (325)
T ss_pred             HHHHHHHHhccC-----------hHHHHHHHHHcCCCHHHH
Confidence            888887653211           111344556677777655

>KOG2035|consensus

Probab=95.32  E-value=0.5  Score=46.91  Aligned_cols=208  Identities=16%  Similarity=0.119  Sum_probs=114.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhh-------hhhhcc-----ceeeecc--ccCCCCccCHHHHHHHHH
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ-------HNLRKK-----LLAYHFC--QSYDLATFSVQNFIQSLV  100 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~-------~~~~~~-----~~~~ff~--~~~~~~~~~~~~~l~sl~  100 (978)
                      ++-.-|.++|+.|+||-|.+-.+..++-+..-.+.       ..+.+.     .++.-|.  -.....-..-+.++..++
T Consensus        32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell  111 (351)
T KOG2035|consen   32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL  111 (351)
T ss_pred             CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence            35578999999999999988888877654321111       111111     1211111  001122233346788888


Q ss_pred             HHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcc
Q psy9384         101 EQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKA  180 (978)
Q Consensus       101 ~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~  180 (978)
                      .+.++..+-..                                      ....++  -++||--.||...+.    +   
T Consensus       112 KevAQt~qie~--------------------------------------~~qr~f--Kvvvi~ead~LT~dA----Q---  144 (351)
T KOG2035|consen  112 KEVAQTQQIET--------------------------------------QGQRPF--KVVVINEADELTRDA----Q---  144 (351)
T ss_pred             HHHHhhcchhh--------------------------------------ccccce--EEEEEechHhhhHHH----H---
Confidence            88887643200                                      000112  278888888876432    2   


Q ss_pred             hhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHH
Q psy9384         181 TCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAE  260 (978)
Q Consensus       181 ~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~  260 (978)
                           .-+++.-.+...+.++|++.-...+.|...-+.+--+.+.+    .+.+||...+..-+...      .-....+
T Consensus       145 -----~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpa----ps~eeI~~vl~~v~~kE------~l~lp~~  209 (351)
T KOG2035|consen  145 -----HALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPA----PSDEEITSVLSKVLKKE------GLQLPKE  209 (351)
T ss_pred             -----HHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCC----CCHHHHHHHHHHHHHHh------cccCcHH
Confidence                 22222222445566777765443333443323344455533    34578887766544422      2234478


Q ss_pred             HHHHHHhhchhhHHHHHHHHhhhhccc-eeeccccccccchhHHH
Q psy9384         261 MLNQLHIKSNGCFLYLERVLDGISNGL-IILREIKDIPGTLNGLY  304 (978)
Q Consensus       261 i~~~l~~~a~g~flw~~~~~~~l~~~~-~~~~~l~~lp~~l~~~y  304 (978)
                      +..+++++|+|+-.=|-++++..+-.. ........+|.--.+.|
T Consensus       210 ~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~  254 (351)
T KOG2035|consen  210 LLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIY  254 (351)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHH
Confidence            899999999999999999999987322 22222355565444455

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.31  E-value=0.06  Score=50.85  Aligned_cols=46  Identities=15%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHcC-CCCCC---CcccCccHHHHHHHcChHHHHHHHHHcCC
Q psy9384         895 HEDCVRLLLHYG-ADPKH---SDHCGRNAFRVAAKSGHETVLRLLKQYAD  940 (978)
Q Consensus       895 ~~~iv~~Ll~~g-a~~~~---~d~~g~t~l~~A~~~~~~~~v~~L~~~g~  940 (978)
                      +..|+++.+++| +++|.   +-+.|.|.|+-|+.+++.+++.+|+++|+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            556777777777 66663   34677888888888888888888888886

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PRK06851 hypothetical protein; Provisional

Probab=95.29  E-value=0.012  Score=62.62  Aligned_cols=41  Identities=27%  Similarity=0.365  Sum_probs=33.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      -.+.+.|+|+||+|||+|+..++..+..         .+..|.+|.|..+
T Consensus       213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~---------~G~~v~~~hC~~d  253 (367)
T PRK06851        213 VKNRYFLKGRPGTGKSTMLKKIAKAAEE---------RGFDVEVYHCGFD  253 (367)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHHHHh---------CCCeEEEEeCCCC
Confidence            5688999999999999999999977543         3777888888843

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.28  E-value=0.012  Score=57.73  Aligned_cols=25  Identities=48%  Similarity=0.769  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..+++|.|+|||||||++..+.+.
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999854

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.28  E-value=0.016  Score=53.62  Aligned_cols=26  Identities=42%  Similarity=0.599  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +.+.|.|+||+|||+++..++..+..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            57899999999999999999977754

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0735|consensus

Probab=95.26  E-value=0.13  Score=57.73  Aligned_cols=27  Identities=37%  Similarity=0.487  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+-+.|.|++|+|||+|+..+++...
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~  456 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYS  456 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhc
Confidence            346689999999999999999998765

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=95.26  E-value=0.033  Score=56.29  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.+|+|+||+|||+++..++.+.
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~   47 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEA   47 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998553

>KOG0635|consensus

Probab=95.22  E-value=0.016  Score=50.87  Aligned_cols=36  Identities=25%  Similarity=0.196  Sum_probs=29.4

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++-+..+.+       +..+.|++|-.|||||||+..+-+.|.
T Consensus        21 ~eRq~l~~q-------kGcviWiTGLSgSGKStlACaL~q~L~   56 (207)
T KOG0635|consen   21 EERQKLLKQ-------KGCVIWITGLSGSGKSTLACALSQALL   56 (207)
T ss_pred             HHHHHHhcC-------CCcEEEEeccCCCCchhHHHHHHHHHH
Confidence            345677765       668999999999999999998876654

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=95.22  E-value=0.2  Score=51.17  Aligned_cols=217  Identities=13%  Similarity=0.149  Sum_probs=114.4

Q ss_pred             hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHH
Q psy9384          19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQS   98 (978)
Q Consensus        19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~s   98 (978)
                      ++++.+-+..+.   ...-.-|.|.|++|.|||+++....+.--... .  .......|.|.    ..+..-+...+..+
T Consensus        46 L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d--~~~~~~PVv~v----q~P~~p~~~~~Y~~  115 (302)
T PF05621_consen   46 LDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-D--EDAERIPVVYV----QMPPEPDERRFYSA  115 (302)
T ss_pred             HHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-C--CCCccccEEEE----ecCCCCChHHHHHH
Confidence            356677777663   22334499999999999999998874311110 0  00012234332    25666777889999


Q ss_pred             HHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCC
Q psy9384          99 LVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSD  178 (978)
Q Consensus        99 l~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~  178 (978)
                      |+.+|......-.                        ............+..+    +.=++|||-+-.+-.+ ....++
T Consensus       116 IL~~lgaP~~~~~------------------------~~~~~~~~~~~llr~~----~vrmLIIDE~H~lLaG-s~~~qr  166 (302)
T PF05621_consen  116 ILEALGAPYRPRD------------------------RVAKLEQQVLRLLRRL----GVRMLIIDEFHNLLAG-SYRKQR  166 (302)
T ss_pred             HHHHhCcccCCCC------------------------CHHHHHHHHHHHHHHc----CCcEEEeechHHHhcc-cHHHHH
Confidence            9999987543200                        0011111111222232    2237788877665322 233466


Q ss_pred             cchhhHHHHHHhccCCCCCceeeeeeecccc-------cchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHH
Q psy9384         179 KATCSIADLLARNHHLFPPWLFLFCTVRRQS-------KSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLR  251 (978)
Q Consensus       179 ~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~-------~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~  251 (978)
                      +++..|+.+-...  .    +-++++.-++-       +.+..+|   ..+.+..+..   .+|.+.++..--..++ ++
T Consensus       167 ~~Ln~LK~L~NeL--~----ipiV~vGt~~A~~al~~D~QLa~RF---~~~~Lp~W~~---d~ef~~LL~s~e~~LP-Lr  233 (302)
T PF05621_consen  167 EFLNALKFLGNEL--Q----IPIVGVGTREAYRALRTDPQLASRF---EPFELPRWEL---DEEFRRLLASFERALP-LR  233 (302)
T ss_pred             HHHHHHHHHhhcc--C----CCeEEeccHHHHHHhccCHHHHhcc---CCccCCCCCC---CcHHHHHHHHHHHhCC-CC
Confidence            6777777665533  1    23455442211       1244443   3445544332   4577777654333222 33


Q ss_pred             hhcCcChHHHHHHHHhhchhhHH-----HHHHHHhhhhccc
Q psy9384         252 VHMNRDTAEMLNQLHIKSNGCFL-----YLERVLDGISNGL  287 (978)
Q Consensus       252 ~~~~~~~~~i~~~l~~~a~g~fl-----w~~~~~~~l~~~~  287 (978)
                      ..+.-...++.+.|.++++|+-=     --..+..+|.++.
T Consensus       234 ~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~  274 (302)
T PF05621_consen  234 KPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGE  274 (302)
T ss_pred             CCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCC
Confidence            33333346788999999988743     2234445555444

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.20  E-value=0.0095  Score=55.34  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++||+|.||||||++++.+...+
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.18  E-value=0.042  Score=55.59  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=38.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS  105 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~  105 (978)
                      +.+....|.|+||+|||||+..++..+...        ......+ ++-. .....++..+++.+...++-
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~--------~fdv~~~-v~vI-~er~~ev~el~~~I~~~~v~   74 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN--------HPEVYLI-VLLI-DERPEEVTDMQRSVKGEVIA   74 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccccc--------cCCeEEE-EEEc-cCCCccHHHHHHHhccEEEE
Confidence            356678999999999999999999776531        0122222 2221 22234788888888444443

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0735|consensus

Probab=95.18  E-value=0.3  Score=54.90  Aligned_cols=23  Identities=43%  Similarity=0.668  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....++|+||||||.|++.++..
T Consensus       702 ~giLLyGppGcGKT~la~a~a~~  724 (952)
T KOG0735|consen  702 TGILLYGPPGCGKTLLASAIASN  724 (952)
T ss_pred             cceEEECCCCCcHHHHHHHHHhh
Confidence            34678999999999999999843

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=95.17  E-value=0.3  Score=51.96  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=31.3

Q ss_pred             cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      |+-+..+++....   + .-..-++++|++|+||++++..++..+.
T Consensus         5 W~~~~~~~l~~~~---~-rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll   46 (342)
T PRK06964          5 WQTDDWNRLQALR---A-RLPHALLLHGQAGIGKLDFAQHLAQGLL   46 (342)
T ss_pred             ccHHHHHHHHHhc---C-CcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence            7766667766541   1 2445788999999999999999986654

>KOG0651|consensus

Probab=95.17  E-value=0.07  Score=53.53  Aligned_cols=26  Identities=35%  Similarity=0.604  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ....+.|+|+||+|||.++..|...+
T Consensus       165 ~Pkg~ll~GppGtGKTlla~~Vaa~m  190 (388)
T KOG0651|consen  165 PPKGLLLYGPPGTGKTLLARAVAATM  190 (388)
T ss_pred             CCceeEEeCCCCCchhHHHHHHHHhc
Confidence            45789999999999999999998544

>PRK13808 adenylate kinase; Provisional

Probab=95.16  E-value=0.3  Score=51.32  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|.|+||+|||+++..+.+.
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~   23 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQ   23 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999744

>PRK06696 uridine kinase; Validated

Probab=95.14  E-value=0.015  Score=58.45  Aligned_cols=45  Identities=22%  Similarity=0.137  Sum_probs=33.9

Q ss_pred             cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      |.-+.+++-+++...   ..+..-+.-|.|.+|||||||+..+++.|.
T Consensus         3 ~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696          3 RKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             HHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            555667777887653   223455788899999999999999997763

>PRK05541 adenylylsulfate kinase; Provisional

Probab=95.12  E-value=0.0097  Score=57.40  Aligned_cols=27  Identities=37%  Similarity=0.320  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++|+.|.|||||||++..+...+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999986654

>PLN02459 probable adenylate kinase

Probab=95.11  E-value=0.061  Score=54.14  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|.|+|||||||+++.+.+.
T Consensus        32 ii~~G~PGsGK~T~a~~la~~   52 (261)
T PLN02459         32 WVFLGCPGVGKGTYASRLSKL   52 (261)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566899999999999999843

>PRK14529 adenylate kinase; Provisional

Probab=95.09  E-value=0.058  Score=53.35  Aligned_cols=22  Identities=36%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++|.|+|||||||+++.+.+++
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~   24 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKY   24 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999998654

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.09  E-value=0.082  Score=48.68  Aligned_cols=126  Identities=17%  Similarity=0.065  Sum_probs=79.5

Q ss_pred             cchHHHhhchHHHHHHHHHhcc---cccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc----
Q psy9384         787 HISRQEYKKRLHILRKIISIAN---NEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA----  859 (978)
Q Consensus       787 ~l~~a~~~g~~~i~~~l~~~~~---~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~----  859 (978)
                      .+.-|++.+.+.++++.-+...   ....+.+.  .||...+.+   +|+|+-.+    ....+  -.+-+..|..    
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~~~~~q~LFE--lAC~~qkyd---iV~WI~qn----L~i~~--~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENERYLNQELFE--LACEEQKYD---IVKWIGQN----LHIYN--PEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcchhHHHHHHH--HHHHHcccc---HHHHHhhc----cCCCC--chhhhhhhhhccch
Confidence            4567888899999988877652   34566666  999999999   99999554    11111  1111122222    


Q ss_pred             -----hhhhhhhc-----cCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChH
Q psy9384         860 -----VPSATDEH-----FSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE  929 (978)
Q Consensus       860 -----~v~~L~~~-----g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~  929 (978)
                           --+++.+.     +.++..--        ..-|..|+..|....|.-.+++|.+++.      ++|-.|+.++|.
T Consensus       118 sLyslGY~l~~~~~~~~~~~d~~~ll--------~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhR  183 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSEHNEDPTSLL--------TQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHR  183 (192)
T ss_pred             hHHHHHHHHHHhhcccccccCHHHHH--------HHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHH
Confidence                 11222222     22222222        3457788888888888888888877653      578888888888


Q ss_pred             HHHHHHHH
Q psy9384         930 TVLRLLKQ  937 (978)
Q Consensus       930 ~~v~~L~~  937 (978)
                      .++.+++.
T Consensus       184 kIL~yfi~  191 (192)
T PF03158_consen  184 KILDYFIR  191 (192)
T ss_pred             HHHHHhhc
Confidence            88887753

These proteins may be involved in promoting survival of infected macrophages [].

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.08  E-value=0.015  Score=56.14  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ....+||+|.||||||+++..+.+.+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999998554

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.04  E-value=0.013  Score=56.96  Aligned_cols=23  Identities=48%  Similarity=0.811  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+|.|+|||||||+++.+.+++
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            46899999999999999998553

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>KOG2505|consensus

Probab=95.01  E-value=0.028  Score=59.44  Aligned_cols=64  Identities=30%  Similarity=0.249  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384         389 GFVDAVQILLEAGANIN------HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA  452 (978)
Q Consensus       389 g~~~~v~~Ll~~g~~~~------~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~  452 (978)
                      .-.+.+++|.+++.+.|      ..+..-.|+||||+..|.-++|.+||+.|+|+...|..|.||...+.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            34667888888776643      22344568888888888888888888888888888888888887776

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.01  E-value=0.18  Score=60.80  Aligned_cols=25  Identities=40%  Similarity=0.679  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.|+|+||+|||+|+..+...+
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~  236 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEA  236 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHh
Confidence            4568899999999999999997543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=95.01  E-value=0.017  Score=60.05  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=39.0

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .|+|=+-.+++|.+.+..-.......+++||+.|++|+|||+|+..+..-+.
T Consensus        62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le  113 (358)
T PF08298_consen   62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE  113 (358)
T ss_pred             cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4666666667777777653222445788999999999999999999986654

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=94.97  E-value=0.069  Score=64.83  Aligned_cols=48  Identities=19%  Similarity=0.389  Sum_probs=36.3

Q ss_pred             CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384           9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus         9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      -..++||+-.+.++.+-|...      ..+-..|+|+||+|||+|+..+...+.
T Consensus       177 l~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~  224 (857)
T PRK10865        177 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRII  224 (857)
T ss_pred             CCcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhh
Confidence            346889988777777766653      334466889999999999999986543

>PRK08118 topology modulation protein; Reviewed

Probab=94.95  E-value=0.015  Score=55.18  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+|.|+||||||||++.+.+.+.
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67899999999999999986653

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=94.95  E-value=0.053  Score=55.27  Aligned_cols=26  Identities=35%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.-|+|+||+|||+|+..++.+.
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~   43 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTV   43 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHe
Confidence            56788999999999999999997543

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=94.94  E-value=0.01  Score=56.77  Aligned_cols=31  Identities=29%  Similarity=0.533  Sum_probs=23.2

Q ss_pred             HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|++.        +.-++|+|+||+|||.|+..++.++
T Consensus        41 ~~~~~~--------~~~l~l~G~~G~GKThLa~ai~~~~   71 (178)
T PF01695_consen   41 LEFIEN--------GENLILYGPPGTGKTHLAVAIANEA   71 (178)
T ss_dssp             H-S-SC----------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCccc--------CeEEEEEhhHhHHHHHHHHHHHHHh
Confidence            577763        3569999999999999999998554

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14527 adenylate kinase; Provisional

Probab=94.94  E-value=0.018  Score=56.26  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++|+.|+|||||||+++.+.+.+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            55789999999999999999998543

>COG3911 Predicted ATPase [General function prediction only]

Probab=94.93  E-value=0.02  Score=50.35  Aligned_cols=22  Identities=41%  Similarity=0.693  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhc
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +++.|+|.||+|||||.+.+..
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~   31 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALAR   31 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHH
Confidence            5899999999999999998873

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=94.93  E-value=0.13  Score=50.99  Aligned_cols=27  Identities=37%  Similarity=0.382  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||.+.+..-+.
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            446899999999999999999986553

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=0.2  Score=57.41  Aligned_cols=25  Identities=40%  Similarity=0.720  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+.++|+||||||+|++.+...
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~  299 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALE  299 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999854

>PRK08939 primosomal protein DnaI; Reviewed

Probab=94.85  E-value=0.02  Score=60.05  Aligned_cols=46  Identities=26%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      |.-++....+|++.-.  .....+.|+|+|+||+|||.|+..+...+.
T Consensus       136 ~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~  181 (306)
T PRK08939        136 RLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA  181 (306)
T ss_pred             HHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3334444577887531  111346799999999999999999997764

>PRK10536 hypothetical protein; Provisional

Probab=94.84  E-value=0.034  Score=55.46  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      -..+|+.-...+..|+.+        ..+.+++|++|||||+|+..+..+
T Consensus        56 ~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         56 PILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             cccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345566666678889874        359999999999999999988753

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=94.84  E-value=0.03  Score=58.25  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=34.4

Q ss_pred             CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384           6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus         6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      |..+..|.-+.-+...+..|+..        ++-++|.|.||+|||+++..+...+.
T Consensus        41 p~~d~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~l~   89 (327)
T TIGR01650        41 PDIDPAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAARLN   89 (327)
T ss_pred             CCCCCCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence            33344444344444567788763        35699999999999999999986653

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=94.82  E-value=0.012  Score=53.45  Aligned_cols=22  Identities=50%  Similarity=0.552  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|.|.||+||||++..+.+++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            3789999999999999998553

...

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=94.80  E-value=0.1  Score=52.76  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+..|.|+||+|||+|+..++...
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~~   43 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVEA   43 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHh
Confidence            56799999999999999999998553

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK06761 hypothetical protein; Provisional

Probab=94.80  E-value=0.021  Score=58.47  Aligned_cols=27  Identities=30%  Similarity=0.252  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .++.||+|.|||||||+++.+.+++..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            368999999999999999999988753

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=94.78  E-value=0.031  Score=49.89  Aligned_cols=27  Identities=30%  Similarity=0.348  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|..|+|||++++.++..+.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.77  E-value=0.23  Score=48.81  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      .+-++.|.|+.|||||||...+-
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig   52 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLG   52 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            45699999999999999999775

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=94.74  E-value=0.097  Score=54.70  Aligned_cols=56  Identities=18%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS  105 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~  105 (978)
                      ...+..|.|.||+|||+++..++.++...        .+..+.||-+.  .    ++..+++-+..++..
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E--~----~~~~~~~r~~~~~~~   84 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLE--E----PVVRTARRLLGQYAG   84 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcc--c----CHHHHHHHHHHHHhC
Confidence            34578889999999999999988664320        14456665533  2    344556666555543

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=94.72  E-value=0.012  Score=58.43  Aligned_cols=52  Identities=12%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             CCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccc
Q psy9384         154 PKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQ  208 (978)
Q Consensus       154 ~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~  208 (978)
                      ..++++++||.+.+.-..........+.+.+.++.+...   ..++.+++++.++
T Consensus       152 ~~~~i~~~iDe~~~l~~~~~~~~~~~~~~~l~~i~~~gR---~~Gi~li~~~Q~p  203 (205)
T PF01580_consen  152 ELPPIFIVIDEFAALRDSAPDDSKKEIMDLLARIARKGR---AAGIHLILATQRP  203 (205)
T ss_dssp             ---EEEEEECTHHHHHHHHHHH----HHHHHHHHHHHCG---GGTEEEEEEESS-
T ss_pred             cCchHHHHhhhHHHHHhhcchhhHHHHHHHHHHHHHHHH---hcCEEEEEEeCCC
Confidence            467899999999888543212224456667777776543   2468888888775

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.69  E-value=0.19  Score=60.55  Aligned_cols=24  Identities=46%  Similarity=0.771  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.|+|+||||||+|++.+...+
T Consensus       488 ~giLL~GppGtGKT~lakalA~e~  511 (733)
T TIGR01243       488 KGVLLFGPPGTGKTLLAKAVATES  511 (733)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhc
Confidence            447789999999999999998543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PHA00729 NTP-binding motif containing protein

Probab=94.68  E-value=0.026  Score=55.31  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .-+.|+|+||+|||+||..+...+
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            458899999999999999998543

>PHA02244 ATPase-like protein

Probab=94.68  E-value=0.035  Score=58.47  Aligned_cols=44  Identities=18%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             CCcccccccchH----HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384           9 SKKFFCREWAFV----KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus         9 ~~~f~~r~w~~~----~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..|.|+.-.++    .+..|+...        .-++|.|+||||||+|+..+...
T Consensus        95 d~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~  142 (383)
T PHA02244         95 DTTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA  142 (383)
T ss_pred             CCcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence            366777766664    467888853        45788999999999999999854

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=94.68  E-value=0.12  Score=63.09  Aligned_cols=46  Identities=20%  Similarity=0.416  Sum_probs=34.7

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..++||+-.+.++.+-|...      ..+-..|+|+||+|||+++..++..+
T Consensus       173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i  218 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRI  218 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            45788988777777766653      33345578999999999999988654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14531 adenylate kinase; Provisional

Probab=94.68  E-value=0.019  Score=55.60  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .-+++.|+|||||||++..+.+.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999844

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=94.67  E-value=0.049  Score=63.13  Aligned_cols=74  Identities=19%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS   91 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~   91 (978)
                      +.|.+-+...++..+...        +.+.++|+||+|||+++..+.+.+-..        .-..++||+ +...    +
T Consensus        20 viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~~~--------~~~~~~~~~-n~~~----~   78 (608)
T TIGR00764        20 VIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLPDE--------ELEDILVYP-NPED----P   78 (608)
T ss_pred             ccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcCch--------hheeEEEEe-CCCC----C
Confidence            345555555556656542        356699999999999999999776431        013455544 3222    5


Q ss_pred             HHHHHHHHHHHHhcC
Q psy9384          92 VQNFIQSLVEQFSSS  106 (978)
Q Consensus        92 ~~~~l~sl~~QL~~~  106 (978)
                      +..++++++.++..+
T Consensus        79 ~~~~~~~v~~~~g~~   93 (608)
T TIGR00764        79 NMPRIVEVPAGEGRE   93 (608)
T ss_pred             chHHHHHHHHhhchH
Confidence            566788888888764

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK12377 putative replication protein; Provisional

Probab=94.64  E-value=0.02  Score=57.79  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...++|+|+||+|||.|+..+...+.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~  126 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLL  126 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999997664

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=94.62  E-value=0.013  Score=54.84  Aligned_cols=26  Identities=38%  Similarity=0.506  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .++.++|.||+|||+++..++..|++
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHH
Confidence            36788999999999999999977765

>KOG0733|consensus

Probab=94.62  E-value=0.1  Score=57.39  Aligned_cols=25  Identities=40%  Similarity=0.656  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....++++|+||||||-|++.|...
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVANE  568 (802)
T KOG0733|consen  544 APSGVLLCGPPGCGKTLLAKAVANE  568 (802)
T ss_pred             CCCceEEeCCCCccHHHHHHHHhhh
Confidence            3456788999999999999999855

>PLN02200 adenylate kinase family protein

Probab=94.61  E-value=0.024  Score=56.97  Aligned_cols=24  Identities=46%  Similarity=0.758  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+++|.|+|||||||+++.+.++
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~   66 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVET   66 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            357888999999999999999854

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=94.58  E-value=0.27  Score=46.33  Aligned_cols=40  Identities=25%  Similarity=0.200  Sum_probs=29.2

Q ss_pred             chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.+.+...+.+.+     -+..+.++|++|+||++++..++..+.
T Consensus         5 ~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll   44 (162)
T PF13177_consen    5 IIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALL   44 (162)
T ss_dssp             HHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHc
Confidence            3455677776532     456789999999999999999986654

...

>PHA02774 E1; Provisional

Probab=94.57  E-value=0.039  Score=61.33  Aligned_cols=39  Identities=21%  Similarity=0.367  Sum_probs=32.1

Q ss_pred             hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +..++.|+.+.     .+.+-+||+|+||+|||.++..++..+.
T Consensus       421 l~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~L~  459 (613)
T PHA02774        421 LTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKFLK  459 (613)
T ss_pred             HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999863     3567899999999999999999996653

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=94.54  E-value=0.15  Score=60.46  Aligned_cols=44  Identities=23%  Similarity=0.483  Sum_probs=33.3

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+||+--+.++.+.+...+     .+. .+|.|+||+|||+++..+...
T Consensus       187 ~liGR~~ei~~~i~iL~r~~-----~~n-~LLvGppGvGKT~lae~la~~  230 (758)
T PRK11034        187 PLIGREKELERAIQVLCRRR-----KNN-PLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_pred             cCcCCCHHHHHHHHHHhccC-----CCC-eEEECCCCCCHHHHHHHHHHH
Confidence            46788887888777777631     333 468999999999999998744

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=94.52  E-value=0.027  Score=54.78  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+..|-|.|..|||||||+..++--..
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~   58 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAGLEK   58 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence            456899999999999999999985543

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=94.47  E-value=0.028  Score=54.66  Aligned_cols=24  Identities=33%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+|.|.||+||||++..+.+.
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~   26 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARH   26 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999855

>PRK00889 adenylylsulfate kinase; Provisional

Probab=94.47  E-value=0.021  Score=54.93  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++||.|.||+||||++..+...+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l   28 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKL   28 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34699999999999999999998655

>KOG0730|consensus

Probab=94.43  E-value=0.5  Score=52.98  Aligned_cols=25  Identities=40%  Similarity=0.630  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+...++|+||||||++++.+...
T Consensus       467 ppkGVLlyGPPGC~KT~lAkalAne  491 (693)
T KOG0730|consen  467 PPKGVLLYGPPGCGKTLLAKALANE  491 (693)
T ss_pred             CCceEEEECCCCcchHHHHHHHhhh
Confidence            4567889999999999999999854

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.37  E-value=0.37  Score=45.76  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=23.4

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9384         561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW  612 (978)
Q Consensus       561 L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~  612 (978)
                      |.-|+...+.+-+.-++...-+       ..+++.+++.++..+++-+|+.+
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd-------A~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD-------AHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH-------HHHHHHHHhcccHHHHHHHHHhh
Confidence            4445555555555544433211       12556666666666666666643

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PRK07261 topology modulation protein; Provisional

Probab=94.31  E-value=0.027  Score=53.69  Aligned_cols=22  Identities=41%  Similarity=0.549  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..|.|.||||||||+..+.+.+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            5789999999999999997554

>PRK14737 gmk guanylate kinase; Provisional

Probab=94.31  E-value=0.045  Score=52.88  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..++.|+|++|+|||+|+..++...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            56789999999999999999998764

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.30  E-value=0.41  Score=44.29  Aligned_cols=72  Identities=13%  Similarity=0.027  Sum_probs=48.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      ..+..|+..+.++++.+.-+...+     .-...++.+..||+..+.|+|+|+-+.-     .-.+-.+.+..|...++.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~-----~~~~~q~LFElAC~~qkydiV~WI~qnL-----~i~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN-----ERYLNQELFELACEEQKYDIVKWIGQNL-----HIYNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc-----chhHHHHHHHHHHHHccccHHHHHhhcc-----CCCCchhhhhhhhhccch
Confidence            357888899999988888763111     1224567888999999999999984421     112223566778888887


Q ss_pred             HH
Q psy9384         425 AV  426 (978)
Q Consensus       425 ~i  426 (978)
                      ++
T Consensus       118 sL  119 (192)
T PF03158_consen  118 SL  119 (192)
T ss_pred             hH
Confidence            76

These proteins may be involved in promoting survival of infected macrophages [].

>PRK04040 adenylate kinase; Provisional

Probab=94.26  E-value=0.027  Score=54.53  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+..|+|.|||||||++..+.+.+
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467889999999999999998665

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.21  E-value=0.039  Score=54.53  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          33 KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++...+++.|+|++|||||+|+..+.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4456788999999999999999999754

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.21  E-value=0.4  Score=48.13  Aligned_cols=26  Identities=23%  Similarity=0.194  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|..|||||||++.+..-+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999998554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.20  E-value=0.044  Score=60.83  Aligned_cols=50  Identities=16%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             cccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          13 FCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        13 ~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +|=+-..+++.+.+...........++||+.|+||+|||+|+..+...+.
T Consensus        79 yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         79 YGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             cCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            34444445666666110000334678999999999999999999986554

>PRK08181 transposase; Validated

Probab=94.17  E-value=0.036  Score=56.70  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=25.2

Q ss_pred             HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          23 VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        23 ~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|++..        .-++|+|+||+|||.|+..+..++
T Consensus       100 ~~~~~~~--------~nlll~Gp~GtGKTHLa~Aia~~a  130 (269)
T PRK08181        100 DSWLAKG--------ANLLLFGPPGGGKSHLAAAIGLAL  130 (269)
T ss_pred             HHHHhcC--------ceEEEEecCCCcHHHHHHHHHHHH
Confidence            4798742        359999999999999999998554

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=94.17  E-value=0.31  Score=49.50  Aligned_cols=27  Identities=33%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+...+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            557899999999999999999986553

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=94.17  E-value=0.14  Score=50.21  Aligned_cols=27  Identities=44%  Similarity=0.554  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+..|.|+||+|||+++..++-++.
T Consensus        31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~   57 (193)
T PF13481_consen   31 RGELTLIAGPPGSGKTTLALQLAAALA   57 (193)
T ss_dssp             TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            346889999999999999999986543

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=94.15  E-value=0.37  Score=51.20  Aligned_cols=42  Identities=19%  Similarity=0.189  Sum_probs=32.0

Q ss_pred             cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      |+-+.+++|....    ..-..-+.++|++|+|||+++..+...+.
T Consensus         5 W~~~~w~~l~~~~----~r~~hA~Lf~G~~G~GK~~la~~~a~~ll   46 (325)
T PRK08699          5 WHQEQWRQIAEHW----ERRPNAWLFAGKKGIGKTAFARFAAQALL   46 (325)
T ss_pred             ccHHHHHHHHHhc----CCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence            7777778887652    12345688999999999999999986653

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.13  E-value=0.05  Score=40.79  Aligned_cols=23  Identities=43%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..|+|+.|+|||||+-.+.--|
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999998876443

>PRK14532 adenylate kinase; Provisional

Probab=94.12  E-value=0.032  Score=54.52  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +++.|+|||||||+++.+.+.
T Consensus         3 i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999844

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.12  E-value=0.43  Score=47.70  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.-.+.
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456899999999999999999986553

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG4240 Predicted kinase [General function prediction only]

Probab=94.11  E-value=0.035  Score=52.83  Aligned_cols=39  Identities=33%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .++..|....     +..=++-|+|+.||||||+++.|+.+|+.
T Consensus        38 ~Kiap~~qe~-----grPli~gisGpQGSGKStls~~i~~~L~~   76 (300)
T COG4240          38 AKIAPWAQER-----GRPLIVGISGPQGSGKSTLSALIVRLLAA   76 (300)
T ss_pred             Hhhhhhhhhc-----CCceEEEeecCCCCchhhHHHHHHHHHHH
Confidence            4666665532     24557888999999999999999988764

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=94.10  E-value=0.27  Score=51.48  Aligned_cols=80  Identities=16%  Similarity=0.096  Sum_probs=51.1

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhh---------hhhhccceeeeccccCC
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ---------HNLRKKLLAYHFCQSYD   86 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~---------~~~~~~~~~~ff~~~~~   86 (978)
                      .++++.+.-.+.        .+.++-+-|+.|+|||||++.+..-+...+..-.         .......++|..-...-
T Consensus        18 ~~~l~~vs~~i~--------~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~   89 (293)
T COG1131          18 KTALDGVSFEVE--------PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL   89 (293)
T ss_pred             CEEEeceeEEEc--------CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence            455555544444        4469999999999999999999866654321110         01123457777766556


Q ss_pred             CCccCHHHHHHHHHHHH
Q psy9384          87 LATFSVQNFIQSLVEQF  103 (978)
Q Consensus        87 ~~~~~~~~~l~sl~~QL  103 (978)
                      ...-++...|.-++.--
T Consensus        90 ~~~lT~~e~l~~~~~l~  106 (293)
T COG1131          90 YPELTVRENLEFFARLY  106 (293)
T ss_pred             CccccHHHHHHHHHHHh
Confidence            77778877777655443

>PRK03846 adenylylsulfate kinase; Provisional

Probab=94.09  E-value=0.034  Score=54.71  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++||+|.+|||||||+..+...+
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            55799999999999999999998655

>PRK03839 putative kinase; Provisional

Probab=94.07  E-value=0.031  Score=54.11  Aligned_cols=23  Identities=39%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...|.|.|||||||++..+.+.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999998554

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=94.03  E-value=0.34  Score=49.45  Aligned_cols=27  Identities=30%  Similarity=0.230  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+...+.
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            456899999999999999999986554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=94.00  E-value=0.036  Score=50.77  Aligned_cols=19  Identities=53%  Similarity=0.866  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy9384          40 ALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii   58 (978)
                      ..|+|.||+||||+++.+-
T Consensus         3 I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             EEEeCCCCCchHHHHHHHH
Confidence            5689999999999999986

>PRK14528 adenylate kinase; Provisional

Probab=94.00  E-value=0.034  Score=53.97  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++|.|+|||||||+++.+.++
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~   24 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCER   24 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999744

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.00  E-value=0.038  Score=55.00  Aligned_cols=26  Identities=38%  Similarity=0.319  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++.|.|.+|||||||+..+...+
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998776

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=93.99  E-value=0.035  Score=53.27  Aligned_cols=23  Identities=39%  Similarity=0.183  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..|.|.|||||||++..+.+.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999776

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=93.98  E-value=0.039  Score=50.77  Aligned_cols=22  Identities=45%  Similarity=0.795  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|.|+||+|||+|+..+...+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999998443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=93.96  E-value=0.45  Score=48.28  Aligned_cols=27  Identities=30%  Similarity=0.199  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=93.95  E-value=0.036  Score=55.24  Aligned_cols=26  Identities=35%  Similarity=0.577  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..++.+|+|+||+|||+++-.++.+.
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~   36 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNA   36 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999887553

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=93.95  E-value=0.34  Score=48.66  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+...+.
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999986543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=93.95  E-value=0.047  Score=66.19  Aligned_cols=53  Identities=23%  Similarity=0.362  Sum_probs=34.7

Q ss_pred             CcccccccchHHHHHHHhcCCCC--CCC-CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNS--KPG-NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~--~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++++|.+...+.+...+......  +++ ..+.+++.|+||+|||+++..+.+.+.
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~  623 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF  623 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence            45667777776665555432100  111 124688999999999999999986653

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=93.94  E-value=0.045  Score=52.40  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.++++.|.+|||||||++.+...+
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l   27 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALF   27 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999998554

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.93  E-value=0.41  Score=48.06  Aligned_cols=26  Identities=27%  Similarity=0.206  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||+..+.--+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14530 adenylate kinase; Provisional

Probab=93.92  E-value=0.036  Score=55.38  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..+|.|+|||||||+++.+.+.+
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            357889999999999999998554

>PRK01184 hypothetical protein; Provisional

Probab=93.92  E-value=0.037  Score=53.79  Aligned_cols=19  Identities=42%  Similarity=0.597  Sum_probs=16.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q psy9384          39 GALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +++|+|+|||||||++. +.
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~   21 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IA   21 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HH
Confidence            78999999999999876 44

>PRK02496 adk adenylate kinase; Provisional

Probab=93.89  E-value=0.034  Score=54.08  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++|.|+|||||||+++.+.+.+
T Consensus         4 i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=93.88  E-value=0.058  Score=47.70  Aligned_cols=29  Identities=24%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAES   64 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~   64 (978)
                      +.-++-+-|+.|||||||.++++-+|...
T Consensus        27 ~GeivtlMGPSGcGKSTLls~~~G~La~~   55 (213)
T COG4136          27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQ   55 (213)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence            45689999999999999999999887653

>PRK15453 phosphoribulokinase; Provisional

Probab=93.86  E-value=0.04  Score=55.69  Aligned_cols=27  Identities=19%  Similarity=0.183  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...+.||+|.|||||||++..+.+.+.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~   30 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFR   30 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457999999999999999999885543

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=93.84  E-value=0.76  Score=52.70  Aligned_cols=49  Identities=22%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+.|+.-.++++.+-+..    -...+.-++|+|.+|+||+.++..|-...
T Consensus       186 ~~~iig~s~~~~~~~~~i~~----~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s  234 (509)
T PRK05022        186 EGEMIGQSPAMQQLKKEIEV----VAASDLNVLILGETGVGKELVARAIHAAS  234 (509)
T ss_pred             CCceeecCHHHHHHHHHHHH----HhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            34577776666554444443    12245679999999999999999997553

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=93.81  E-value=0.33  Score=48.31  Aligned_cols=26  Identities=31%  Similarity=0.188  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||.+.+.--+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            45789999999999999999998554

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.78  E-value=0.11  Score=55.92  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=28.4

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .|.+++..       .++++.|+|++||||||++..++..+.
T Consensus       113 ~l~~~~~~-------~~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       113 VLRELAER-------PRGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             HHHHHHhh-------cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            46667654       458899999999999999999987654

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=93.78  E-value=0.053  Score=57.37  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++.++...+  +.+....+||.|.||||||+++..+.+.+
T Consensus       120 l~~~~~~~~--~~~~~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        120 LSGMLGAGR--RAARRRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             HHHHHhhhh--hccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            566666654  67778899999999999999999998665

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=93.76  E-value=0.039  Score=52.65  Aligned_cols=22  Identities=45%  Similarity=0.756  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|-|+||+||||+|+.+.+.+
T Consensus         3 iiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999998663

>PHA02624 large T antigen; Provisional

Probab=93.76  E-value=0.063  Score=59.97  Aligned_cols=37  Identities=27%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      -++.|+.+-     .+++.++++|+||+|||+++..+++.|.
T Consensus       420 ~lk~~l~gi-----PKk~~il~~GPpnTGKTtf~~sLl~~L~  456 (647)
T PHA02624        420 ILKLIVENV-----PKRRYWLFKGPVNSGKTTLAAALLDLCG  456 (647)
T ss_pred             HHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            357788763     3678999999999999999999997774

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.74  E-value=0.047  Score=50.04  Aligned_cols=51  Identities=31%  Similarity=0.331  Sum_probs=33.7

Q ss_pred             CCcccccccchHH-HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384           9 SKKFFCREWAFVK-LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus         9 ~~~f~~r~w~~~~-~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +++|.+|.-+|.+ ..+=++. -+..-..++.|-+.|..|||||||++.++--
T Consensus        11 sKtF~~~~~lf~r~~~~AV~~-vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm   62 (267)
T COG4167          11 SKTFRYRTGLFRRQTVEAVKP-VSFTLREGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             hhhhhhhhhhhhhhhhhcccc-eEEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence            5789999888853 1111111 0001115678999999999999999998733

>PRK08356 hypothetical protein; Provisional

Probab=93.74  E-value=0.051  Score=53.28  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=20.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +..++.|+|+|||||||++..+.
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~   26 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFE   26 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH
Confidence            34578899999999999999995

>cd01394 radB RadB

Probab=93.73  E-value=0.041  Score=55.25  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+.+|+|+||+|||+++..++.+.
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998554

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=93.72  E-value=0.47  Score=47.37  Aligned_cols=27  Identities=30%  Similarity=0.290  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||...+...+.
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            557899999999999999999986653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PTZ00301 uridine kinase; Provisional

Probab=93.72  E-value=0.034  Score=54.64  Aligned_cols=24  Identities=38%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -++-|.|+||||||||+..+++.+
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHH
Confidence            467889999999999999888665

>KOG3928|consensus

Probab=93.68  E-value=1.9  Score=45.58  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      -.-+.|.|.||+|||+.+++++.+..
T Consensus       179 ~~r~vL~Ge~GtGKSiaL~qa~h~a~  204 (461)
T KOG3928|consen  179 VKRFVLDGEPGTGKSIALAQAVHYAA  204 (461)
T ss_pred             ceEEEEeCCCCCchhhHHHHHHHHHh
Confidence            34588999999999999999986543

>PRK06547 hypothetical protein; Provisional

Probab=93.65  E-value=0.053  Score=51.52  Aligned_cols=26  Identities=38%  Similarity=0.400  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+..|.|.+||||||++..+.+.+
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45677788999999999999998654

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.62  E-value=0.11  Score=49.51  Aligned_cols=141  Identities=13%  Similarity=0.076  Sum_probs=73.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS  115 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~  115 (978)
                      -+.++.|.|+-|+|||+|+..++--+..         ....++|.-          .+.-.|..+.|.-+-.-++.+.+-
T Consensus        27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~---------~g~~v~yvs----------Te~T~refi~qm~sl~ydv~~~~l   87 (235)
T COG2874          27 VGSLILIEGDNGTGKSVLSQRFAYGFLM---------NGYRVTYVS----------TELTVREFIKQMESLSYDVSDFLL   87 (235)
T ss_pred             cCeEEEEECCCCccHHHHHHHHHHHHHh---------CCceEEEEE----------echhHHHHHHHHHhcCCCchHHHh
Confidence            4678999999999999999988733322         144455532          223378889998875545444433


Q ss_pred             h-hhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCC
Q psy9384         116 T-IVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHL  194 (978)
Q Consensus       116 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~  194 (978)
                      . ...-...+-  ..-...+.....+.+.+.+...    ....-++|||.|+-.-..+.++...+++..++.+...    
T Consensus        88 ~G~l~~~~~~~--~~~~~~~~~~~~~L~~l~~~~k----~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~----  157 (235)
T COG2874          88 SGRLLFFPVNL--EPVNWGRRSARKLLDLLLEFIK----RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDL----  157 (235)
T ss_pred             cceeEEEEecc--cccccChHHHHHHHHHHHhhHH----hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhC----
Confidence            2 111111000  0000112122333333333332    3455699999999886543232233344444444432    


Q ss_pred             CCCceeeeeeeccc
Q psy9384         195 FPPWLFLFCTVRRQ  208 (978)
Q Consensus       195 ~~~~~~~~~~sr~~  208 (978)
                         +-.+++|..|.
T Consensus       158 ---gKvIilTvhp~  168 (235)
T COG2874         158 ---GKVIILTVHPS  168 (235)
T ss_pred             ---CCEEEEEeChh
Confidence               22455666554

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=93.60  E-value=0.43  Score=48.02  Aligned_cols=26  Identities=35%  Similarity=0.310  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||...+.--+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999988654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=93.58  E-value=0.052  Score=55.38  Aligned_cols=23  Identities=43%  Similarity=0.540  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..|.|+||+|||++...++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            69999999999998888888554

>cd01131 PilT Pilus retraction ATPase PilT

Probab=93.57  E-value=0.049  Score=53.47  Aligned_cols=25  Identities=32%  Similarity=0.390  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +++.|.|++||||||++..++..+.
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhh
Confidence            6899999999999999999886654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06835 DNA replication protein DnaC; Validated

Probab=93.56  E-value=0.051  Score=57.50  Aligned_cols=37  Identities=30%  Similarity=0.322  Sum_probs=27.0

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...|++.-   .. ....|+|+|+||+|||.|+..|...+.
T Consensus       172 ~~~f~~~f---~~-~~~~Lll~G~~GtGKThLa~aIa~~l~  208 (329)
T PRK06835        172 CKNFIENF---DK-NNENLLFYGNTGTGKTFLSNCIAKELL  208 (329)
T ss_pred             HHHHHHHH---hc-cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence            34566642   11 236699999999999999999986653

>KOG2170|consensus

Probab=93.56  E-value=0.16  Score=50.99  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=29.1

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++..+.++   .+.+.-+|-++|.+|+||+.++..|++++
T Consensus        98 lk~~~~n~---~p~KPLvLSfHG~tGTGKN~Va~iiA~n~  134 (344)
T KOG2170|consen   98 LKSHWANP---NPRKPLVLSFHGWTGTGKNYVAEIIAENL  134 (344)
T ss_pred             HHHHhcCC---CCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence            46666665   44556678889999999999999999764

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=93.55  E-value=0.096  Score=60.51  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=52.4

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..+.|.+...+.+...+...        +...++|+||+|||+++..+.+.+-..        .-..+.|+. +    ..
T Consensus        31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~~~--------~~~~~~~~~-n----p~   89 (637)
T PRK13765         31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLPKE--------ELQDILVYP-N----PE   89 (637)
T ss_pred             HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcChH--------hHHHheEee-C----CC
Confidence            45678888888888887752        478899999999999999998765321        012233333 2    33


Q ss_pred             cCHHHHHHHHHHHHhcC
Q psy9384          90 FSVQNFIQSLVEQFSSS  106 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~  106 (978)
                      .++..+++.++.++-.+
T Consensus        90 ~~~~~~~~~v~~~~G~~  106 (637)
T PRK13765         90 DPNNPKIRTVPAGKGKQ  106 (637)
T ss_pred             cchHHHHHHHHHhcCHH
Confidence            46677788888766654

>PRK06921 hypothetical protein; Provisional

Probab=93.55  E-value=0.06  Score=55.35  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ....++|+|+||+|||.|+..|+..+.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~  142 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELM  142 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence            346799999999999999999987664

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=93.55  E-value=0.91  Score=48.99  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .-...|.+.+.    .....|+|+|+.|+|||-|+..+.....
T Consensus       100 aa~~~va~~~g----~~~nplfi~G~~GlGKTHLl~Aign~~~  138 (408)
T COG0593         100 AAAKAVAENPG----GAYNPLFIYGGVGLGKTHLLQAIGNEAL  138 (408)
T ss_pred             HHHHHHHhccC----CcCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            34577777541    1467899999999999999999985543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.54  E-value=0.043  Score=53.95  Aligned_cols=21  Identities=38%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|.|+|||||||++..+.++
T Consensus         2 I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            589999999999999999854

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR02012 tigrfam_recA protein RecA

Probab=93.50  E-value=0.15  Score=53.31  Aligned_cols=26  Identities=31%  Similarity=0.261  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..++.-|+|+||+|||+|+-.++.+.
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~   79 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEA   79 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            55688899999999999999887553

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>TIGR03263 guanyl_kin guanylate kinase

Probab=93.49  E-value=0.064  Score=51.95  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++.|.|++|||||+|+..+....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            578999999999999999999754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13975 thymidylate kinase; Provisional

Probab=93.48  E-value=0.047  Score=53.77  Aligned_cols=25  Identities=32%  Similarity=0.179  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+|.|.+||||||+++.+.+.+.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999997764

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=93.48  E-value=0.058  Score=53.08  Aligned_cols=22  Identities=41%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHh
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +..++|+|.||+|||++++.+-
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC
Confidence            4679999999999999999885

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=93.46  E-value=0.94  Score=47.68  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             cchH---HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          17 WAFV---KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        17 w~~~---~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      |+-+   +++..+...+     -..-+.++|+.|.||+.++..++..+.
T Consensus         7 Wl~~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~ll   50 (319)
T PRK06090          7 WLVPVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALL   50 (319)
T ss_pred             cHHHHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHc
Confidence            5554   4555555432     445799999999999999999986653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.46  E-value=0.45  Score=47.82  Aligned_cols=27  Identities=26%  Similarity=0.180  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||+..+..-+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999986543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=93.44  E-value=0.05  Score=57.87  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++++.|.|||||||+++.+.+++
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            578889999999999999998554

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=93.44  E-value=0.45  Score=46.84  Aligned_cols=27  Identities=26%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||.+.+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986553

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14526 adenylate kinase; Provisional

Probab=93.44  E-value=0.048  Score=53.79  Aligned_cols=21  Identities=38%  Similarity=0.620  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|.|+|||||||+++.+...
T Consensus         3 i~l~G~pGsGKsT~a~~La~~   23 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNE   23 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999998744

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=93.43  E-value=0.55  Score=56.21  Aligned_cols=42  Identities=21%  Similarity=0.336  Sum_probs=30.3

Q ss_pred             cccccccchHHH----HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKL----VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~----~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|+.-.++++    +.+..        ...-++|+|.||+|||+++..|-..
T Consensus       377 ~liG~S~~~~~~~~~~~~~a~--------~~~pVLI~GE~GTGK~~lA~~ih~~  422 (686)
T PRK15429        377 EIIGRSEAMYSVLKQVEMVAQ--------SDSTVLILGETGTGKELIARAIHNL  422 (686)
T ss_pred             ceeecCHHHHHHHHHHHHHhC--------CCCCEEEECCCCcCHHHHHHHHHHh
Confidence            466776555543    44433        3457999999999999999999754

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=93.43  E-value=0.043  Score=52.18  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++|+|+||+|||+++..++..+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36889999999999999998554

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=93.43  E-value=0.39  Score=48.08  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+..-+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=93.43  E-value=0.51  Score=50.04  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+..-+.
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   55 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMIS   55 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK06217 hypothetical protein; Validated

Probab=93.43  E-value=0.05  Score=52.78  Aligned_cols=22  Identities=36%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|.|.|||||||+++.+.+.+
T Consensus         4 I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          4 IHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            6889999999999999998665

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=93.42  E-value=0.065  Score=52.06  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++|++|.||+|||++++.+...+
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l   42 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKL   42 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998554

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK00625 shikimate kinase; Provisional

Probab=93.40  E-value=0.048  Score=51.79  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|.|.|||||||++..+.+++
T Consensus         3 I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          3 IFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998554

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=93.37  E-value=0.58  Score=48.30  Aligned_cols=27  Identities=30%  Similarity=0.245  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||+..+.--+.
T Consensus        49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         49 EGDVIGLVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            456888999999999999999986543

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=93.37  E-value=0.45  Score=50.44  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+..-+.
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=93.37  E-value=0.54  Score=47.29  Aligned_cols=27  Identities=30%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+...+.
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.37  E-value=0.1  Score=56.87  Aligned_cols=37  Identities=30%  Similarity=0.356  Sum_probs=31.4

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAES   64 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~   64 (978)
                      .|.+++..       ..|++.++|+.||||||.+-.++..+.+.
T Consensus       249 ~~~~~~~~-------p~GliLvTGPTGSGKTTTLY~~L~~ln~~  285 (500)
T COG2804         249 RLLRLLNR-------PQGLILVTGPTGSGKTTTLYAALSELNTP  285 (500)
T ss_pred             HHHHHHhC-------CCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence            57888887       55899999999999999999998776553

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.36  E-value=0.057  Score=52.22  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.|.|+||||||||+..+...+
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478899999999999999987664

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=93.35  E-value=0.041  Score=53.93  Aligned_cols=25  Identities=40%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +.-|.|++||||||+++.+...|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc
Confidence            4568999999999999999987764

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=93.35  E-value=0.075  Score=53.67  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +++++..|...+     +..-++-|.|++|+|||||+..+...+..
T Consensus        19 l~~~~~~~~~~~-----~~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         19 LLRRLAALQAEP-----QRRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             HHHHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            445667777642     35668889999999999999999977653

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=93.34  E-value=0.24  Score=58.28  Aligned_cols=23  Identities=48%  Similarity=0.768  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +-+.|+|+||+|||++++.+...
T Consensus       186 ~gill~G~~G~GKt~~~~~~a~~  208 (644)
T PRK10733        186 KGVLMVGPPGTGKTLLAKAIAGE  208 (644)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999744

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=93.33  E-value=0.07  Score=52.20  Aligned_cols=26  Identities=31%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.++..|.|.||+|||++++.+++.+
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~   42 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEAL   42 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHH
Confidence            55799999999999999999988554

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=93.33  E-value=0.077  Score=45.15  Aligned_cols=23  Identities=43%  Similarity=0.696  Sum_probs=20.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      ...+..|.|++|||||||+..+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            45689999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>CHL00206 ycf2 Ycf2; Provisional

Probab=93.31  E-value=0.26  Score=62.28  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++...++|+||||||.||+.++.+.
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhc
Confidence            45678899999999999999999554

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.31  E-value=0.72  Score=46.09  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||+..+.-.+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999987554

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi

Probab=93.31  E-value=0.38  Score=52.87  Aligned_cols=61  Identities=20%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             cccch--HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHH-HHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384          15 REWAF--VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCK-EIVFPSAESSFSQQHNLRKKLLAYHFCQ   83 (978)
Q Consensus        15 r~w~~--~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~-~ii~~l~~~~~~~~~~~~~~~~~~ff~~   83 (978)
                      |.|-.  +.+.+|+.+..   ......+.+.|.||-|||+=+. ++.-+|..-.     ...-.+||||+..
T Consensus       103 RVW~iVk~~l~~W~~~~~---~~~~~p~vlIGTPGIGKS~~~GS~LLyqLLHy~-----~~~L~vVaYfv~~  166 (439)
T PF07999_consen  103 RVWHIVKRDLDRWLSGRG---ERDPRPFVLIGTPGIGKSFGTGSYLLYQLLHYD-----AEKLPVVAYFVGG  166 (439)
T ss_pred             hhHHHHHHHHHHHhccCC---CCCCCceEEEecCCcCccccchhhhhhhhhcCC-----hhhccEEEEEEec
Confidence            35655  46999998742   2234567999999999996554 6665554422     1224678888744

Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=93.29  E-value=0.37  Score=54.64  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=62.0

Q ss_pred             EEEEEeccccccccCCCcCCCcchhhHHHHHHhc-------cCCCCCceeeeeeecccccchh--hccc-------Cccc
Q psy9384         158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARN-------HHLFPPWLFLFCTVRRQSKSIK--KMFL-------GFHK  221 (978)
Q Consensus       158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~~sr~~~~~i~--~~~~-------~~~~  221 (978)
                      -++++|.+|+.+..-    +.    .|.+++...       ....+.++++|++|+++.....  ..|+       ....
T Consensus       235 gtl~l~~i~~l~~~~----q~----~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~  306 (445)
T TIGR02915       235 GTLFLDEIGDLPLNL----QA----KLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEIS  306 (445)
T ss_pred             CEEEEechhhCCHHH----HH----HHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccce
Confidence            479999999997431    22    333344322       1122346899999988754321  1121       1224


Q ss_pred             cccccccchhhhhHHHHHHHHHhcCchHHHh-hcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384         222 LSLDDLRKSHVIRDMQQYILLRLASEESLRV-HMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS  284 (978)
Q Consensus       222 i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~-~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~  284 (978)
                      |.+..+..  ..+||...+..-+.+...... ......++..+.|.... .|+..=++.+++.+.
T Consensus       307 i~lPpLr~--R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~  369 (445)
T TIGR02915       307 ITIPPLRS--RDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAV  369 (445)
T ss_pred             ecCCCchh--chhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence            55544333  457887777766654422211 12234455556665543 666666666665543

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=93.25  E-value=0.71  Score=46.74  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|..|||||||++.+...+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999886553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=93.24  E-value=0.061  Score=54.83  Aligned_cols=33  Identities=33%  Similarity=0.456  Sum_probs=27.0

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.+|+.+        ..-+.++|+||+|||.|+..+...+.
T Consensus        98 ~~~~~~~--------~~nl~l~G~~G~GKThLa~Ai~~~l~  130 (254)
T COG1484          98 LVEFFER--------GENLVLLGPPGVGKTHLAIAIGNELL  130 (254)
T ss_pred             HHHHhcc--------CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence            5678874        24699999999999999999986654

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=93.22  E-value=0.78  Score=51.18  Aligned_cols=81  Identities=11%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             CCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhH
Q psy9384         194 LFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCF  273 (978)
Q Consensus       194 ~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~f  273 (978)
                      .-|++|++|+.+.-+.....-.++.+..+++..++.    ++|..++..-+...      .-..-++....+...|+|..
T Consensus       145 EPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~----~~I~~~L~~i~~~E------~I~~e~~aL~~ia~~a~Gs~  214 (515)
T COG2812         145 EPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDL----EEIAKHLAAILDKE------GINIEEDALSLIARAAEGSL  214 (515)
T ss_pred             cCccCeEEEEecCCcCcCchhhhhccccccccCCCH----HHHHHHHHHHHHhc------CCccCHHHHHHHHHHcCCCh
Confidence            456788888877554332223345566667655554    68888877655522      12233456788888899987


Q ss_pred             HHHHHHHhhhh
Q psy9384         274 LYLERVLDGIS  284 (978)
Q Consensus       274 lw~~~~~~~l~  284 (978)
                      .=+-..+|.+-
T Consensus       215 RDalslLDq~i  225 (515)
T COG2812         215 RDALSLLDQAI  225 (515)
T ss_pred             hhHHHHHHHHH
Confidence            76666666654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=93.21  E-value=0.8  Score=54.46  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=65.4

Q ss_pred             cEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcccC-------cc
Q psy9384         157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFLG-------FH  220 (978)
Q Consensus       157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~~-------~~  220 (978)
                      .-+++||.+|+.+..-    +.    .|.+++....       ...+..+++|++|.+......  ..|+.       ..
T Consensus       417 ~GtL~ldei~~l~~~~----Q~----~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~  488 (638)
T PRK11388        417 GGTLFLEKVEYLSPEL----QS----ALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAF  488 (638)
T ss_pred             CCEEEEcChhhCCHHH----HH----HHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhcee
Confidence            3489999999997431    22    3444443221       112236788888877653222  12221       12


Q ss_pred             ccccccccchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384         221 KLSLDDLRKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS  284 (978)
Q Consensus       221 ~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~  284 (978)
                      .|.+..+..  -.+||...+..-+.+.............+..+.|.... .|+..=++-+++.+.
T Consensus       489 ~i~lPpLre--R~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~  551 (638)
T PRK11388        489 EITIPPLRM--RREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLA  551 (638)
T ss_pred             EEeCCChhh--hhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence            344543333  34788888887776543221112235566777777765 788777776666643

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=93.16  E-value=0.6  Score=50.16  Aligned_cols=63  Identities=14%  Similarity=0.103  Sum_probs=37.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhh---------hhhhhccceeeeccccCCCCccCHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQ---------QHNLRKKLLAYHFCQSYDLATFSVQNFIQS   98 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~---------~~~~~~~~~~~ff~~~~~~~~~~~~~~l~s   98 (978)
                      .+.++-|.|+.|+|||||+..+..-+...+..-         ........++|.|=+.......++...++.
T Consensus        66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~  137 (340)
T PRK13536         66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV  137 (340)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHH
Confidence            457899999999999999999986554322100         001123456766643333344566655553

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.13  E-value=0.85  Score=45.49  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|..|+|||||...+..-+.
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=93.13  E-value=0.05  Score=53.12  Aligned_cols=21  Identities=43%  Similarity=0.945  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..|.|+||+|||+|+..++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~   22 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            578999999999999988744

A related protein is found in archaea.

>TIGR00235 udk uridine kinase

Probab=93.11  E-value=0.063  Score=53.28  Aligned_cols=27  Identities=37%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++-|.|++|||||||+..+...+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            446788999999999999999986553

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK04182 cytidylate kinase; Provisional

Probab=93.08  E-value=0.063  Score=52.03  Aligned_cols=23  Identities=39%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+|.|.||||||+++..+.+.+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999998554

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=93.06  E-value=0.056  Score=50.77  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++|.|.||||||++++.+.+.+
T Consensus         2 i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6899999999999999997443

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=93.05  E-value=0.54  Score=46.91  Aligned_cols=27  Identities=30%  Similarity=0.276  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||++.+..-+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=93.02  E-value=0.76  Score=46.75  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++-|.|..|+|||||++.+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        25 TGSLVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=93.01  E-value=0.043  Score=54.32  Aligned_cols=28  Identities=32%  Similarity=0.443  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +...++=|+|+||+|||||+..++..+.
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~   54 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELR   54 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence            4567899999999999999999996654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=93.00  E-value=0.068  Score=46.90  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+.++.++|+-|+|||++++.++..+..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            5579999999999999999999988743

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=92.99  E-value=0.058  Score=50.23  Aligned_cols=24  Identities=38%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +++|.|.+|+|||||+..++..+.
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~   24 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALK   24 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999997764

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=92.99  E-value=0.16  Score=54.07  Aligned_cols=60  Identities=18%  Similarity=0.183  Sum_probs=36.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS  104 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~  104 (978)
                      +.++-..|.|+||+|||||+..|.......         ...+..|++-.+ +..+.+..+.+.+...++
T Consensus       167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n---------hFDv~~~VvLIg-ER~~EVtdiqrsIlg~vv  226 (416)
T PRK09376        167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN---------HPEVHLIVLLID-ERPEEVTDMQRSVKGEVV  226 (416)
T ss_pred             ccCceEEEeCCCCCChhHHHHHHHHHHHhh---------cCCeEEEEEEeC-CchhHHHHHHHHhcCcEE
Confidence            345556777999999999999998665431         111222333322 233467777777765444

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=92.98  E-value=0.27  Score=49.54  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+..|.|.||+|||+++..++..
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~   39 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQ   39 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578899999999999999988744

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK05439 pantothenate kinase; Provisional

Probab=92.97  E-value=0.083  Score=55.00  Aligned_cols=38  Identities=18%  Similarity=0.026  Sum_probs=27.3

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+++..+   ..+..-+.-|.|+|||||||++..+.+.+.
T Consensus        74 ~~~fl~~~---~~~~~~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         74 LEQFLGKN---GQKVPFIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             HHHHhccc---CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45566532   233445777899999999999999986553

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=92.96  E-value=0.52  Score=50.33  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++++++.+..++..+.. .....++..|.|++|+||||++..+...+
T Consensus       220 ~~~l~~~l~~~l~~~~~-~~~~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        220 IEYILEDMRSHFNTENV-FEKEVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             HHHHHHHHHHHhccccc-cccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            45666677777764311 11234788999999999999999998554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=92.96  E-value=0.53  Score=47.73  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||++.+...+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999997554

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=92.95  E-value=0.48  Score=47.73  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|+|||||...+..-+.
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=92.95  E-value=0.26  Score=53.28  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+..+.|++|+||||++..++.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~  246 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAK  246 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467889999999999999999854

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=92.90  E-value=0.061  Score=51.09  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=18.3

Q ss_pred             EEEcCCCCcHHHHHHHHhcCC
Q psy9384          41 LIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        41 ~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.|.|||||||+++.+...+
T Consensus         2 ~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         2 VLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             EEECCCCCCHHHHHHHHHHhc
Confidence            478999999999999998553

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>KOG0729|consensus

Probab=92.90  E-value=0.46  Score=46.49  Aligned_cols=55  Identities=15%  Similarity=0.182  Sum_probs=32.1

Q ss_pred             CCcEEEEEeccccccccC---CCcCCCcchhhHHHHHHhccCCCC-Cceeeeeeecccc
Q psy9384         155 KTSYFILVDSIDETHVTN---KKIYSDKATCSIADLLARNHHLFP-PWLFLFCTVRRQS  209 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~sr~~~  209 (978)
                      ....+|++|-+|-+...-   ....-.++-+...+++.+....-| .++++++.+.|+.
T Consensus       269 kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd  327 (435)
T KOG0729|consen  269 KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD  327 (435)
T ss_pred             cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence            455788889888875420   000011234556666666543334 5789998886654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=92.87  E-value=0.086  Score=55.61  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...+++|+|.||+|||||+..++..+.
T Consensus        55 ~~~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         55 NALRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999986654

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=92.86  E-value=0.077  Score=51.08  Aligned_cols=25  Identities=36%  Similarity=0.547  Sum_probs=19.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..-+.+.|+||+|||++++.+-.-|
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            3568999999999999999997544

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=92.79  E-value=0.41  Score=59.39  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=20.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +++++.|.|.+||||||..-.++.
T Consensus        88 ~~~VviI~GeTGSGKTTqlPq~ll  111 (1294)
T PRK11131         88 DHQVVIVAGETGSGKTTQLPKICL  111 (1294)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999998776653

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=92.78  E-value=0.45  Score=51.36  Aligned_cols=40  Identities=23%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+...|.....    ....-+.++|+||+|||+++-.+...+..
T Consensus        11 ~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~   50 (325)
T COG0470          11 KRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLC   50 (325)
T ss_pred             HHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence            35677777431    12335999999999999999999877653

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=92.76  E-value=0.085  Score=53.03  Aligned_cols=49  Identities=29%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          33 KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      ..+...++=|+|.||+|||||...++.++..         ....|+----+.+.+.+.
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~---------~G~rVaVlAVDPSSp~TG   95 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGRELRE---------RGHRVAVLAVDPSSPFTG   95 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHHHH---------CCcEEEEEEECCCCCCCC
Confidence            3456679999999999999999999977743         244455445555544443

>PRK07667 uridine kinase; Provisional

Probab=92.76  E-value=0.069  Score=52.20  Aligned_cols=27  Identities=30%  Similarity=0.059  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...+.-|.|.|||||||++..+.+.+.
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445778899999999999999997764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=92.75  E-value=0.75  Score=47.31  Aligned_cols=27  Identities=30%  Similarity=0.303  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=92.74  E-value=0.058  Score=51.89  Aligned_cols=24  Identities=38%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++.|.|.||||||||+..+...+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999997754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=92.74  E-value=0.079  Score=49.85  Aligned_cols=27  Identities=30%  Similarity=0.215  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...++.|.|.+|||||||+..++..+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            456899999999999999999997764

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=92.72  E-value=0.71  Score=46.90  Aligned_cols=26  Identities=31%  Similarity=0.170  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||.+.+..-+
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45789999999999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK09183 transposase/IS protein; Provisional

Probab=92.71  E-value=0.08  Score=54.32  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.|.|+||+|||+|+..+...
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999999633

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=92.67  E-value=0.069  Score=52.64  Aligned_cols=23  Identities=48%  Similarity=0.562  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++-|.|++|||||||+..+...+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999998765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=92.65  E-value=0.83  Score=46.46  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||+..+.-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45789999999999999999998554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK04132 replication factor C small subunit; Provisional

Probab=92.65  E-value=1.2  Score=53.19  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHH
Q psy9384         158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQ  237 (978)
Q Consensus       158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~  237 (978)
                      -++|||-.|-...+.        -..|.+++.    ..|.++++|+++.+....++...+.+..+.+.....    ++|.
T Consensus       632 KVvIIDEaD~Lt~~A--------QnALLk~lE----ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~----~~i~  695 (846)
T PRK04132        632 KIIFLDEADALTQDA--------QQALRRTME----MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRD----EDIA  695 (846)
T ss_pred             EEEEEECcccCCHHH--------HHHHHHHhh----CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCH----HHHH
Confidence            588888888876431        123444443    345577888888776654555555666777755443    5777


Q ss_pred             HHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         238 QYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       238 ~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..+..-....      .-...++....++..|+|....|-..++.+.
T Consensus       696 ~~L~~I~~~E------gi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~  736 (846)
T PRK04132        696 KRLRYIAENE------GLELTEEGLQAILYIAEGDMRRAINILQAAA  736 (846)
T ss_pred             HHHHHHHHhc------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6655433311      1122356788999999999999988888765

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=92.63  E-value=0.13  Score=52.95  Aligned_cols=27  Identities=33%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+++.|+|++||||||++..+++.+.
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            557899999999999999999987753

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK12338 hypothetical protein; Provisional

Probab=92.61  E-value=0.083  Score=54.90  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+++|.|.||+||||++..+...+
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l   28 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTL   28 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHC
Confidence            3689999999999999999998654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=92.59  E-value=0.047  Score=55.04  Aligned_cols=22  Identities=45%  Similarity=0.650  Sum_probs=19.1

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC
Q psy9384          42 IIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        42 l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +.|+|||||||+++.+.+++..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~   22 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLES   22 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh
Confidence            5799999999999999988754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=92.57  E-value=0.059  Score=55.30  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+++|.|||||||++..+.+++
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l   23 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKL   23 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            36789999999999999998665

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PLN02796 D-glycerate 3-kinase

Probab=92.55  E-value=0.13  Score=54.04  Aligned_cols=47  Identities=21%  Similarity=0.101  Sum_probs=29.9

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .|+++.+...+..-........-++-|.|.+|||||||+..+...+.
T Consensus        79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            46666665555211000111234577899999999999999987764

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=92.50  E-value=0.071  Score=57.87  Aligned_cols=24  Identities=38%  Similarity=0.508  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.|+|.||||||+|+..++..+
T Consensus         2 ~v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    2 QVILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             eEEEEEecCCcCHHHHHHHHHHHh
Confidence            588999999999999999999877

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=92.47  E-value=0.76  Score=46.82  Aligned_cols=26  Identities=35%  Similarity=0.371  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||++.+.--+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=92.47  E-value=0.76  Score=48.69  Aligned_cols=65  Identities=14%  Similarity=0.035  Sum_probs=38.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhh---------hhhhccceeeeccccCCCCccCHHHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ---------HNLRKKLLAYHFCQSYDLATFSVQNFIQSLV  100 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~---------~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~  100 (978)
                      .+.++-|.|+.|+|||||++.+..-+...+..-.         .......++|.+=+..-....++...+....
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~  105 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG  105 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHH
Confidence            4468999999999999999999865543221000         0011345777764433334456666655433

>PRK00300 gmk guanylate kinase; Provisional

Probab=92.41  E-value=0.11  Score=51.71  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|++|||||+|+..+...+
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	978
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-37
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-31
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-27
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-25
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-24
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-27
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-26
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-25
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-26
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-21
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-20
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-26
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-25
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-26
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-25
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-23
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-25
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-22
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-22
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-25
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-21
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-18
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-16
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-25
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-20
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-20
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-24
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-21
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-24
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-20
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-17
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-24
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-21
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-21
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-19
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-23
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-19
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-17
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-23
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-19
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-15
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-23
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-17
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-23
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-23
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-20
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-23
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-23
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-21
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-20
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-23
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-20
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-23
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-20
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-19
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-15
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-22
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-19
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-19
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-17
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-22
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-20
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-17
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		8e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-22
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-22
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-17
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-20
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-19
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-18
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-15
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-20
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-19
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-20
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-13
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-11
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-19
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-16
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-19
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-16
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-18
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-16
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-13
1uoh_A	226	Human Gankyrin Length = 226		2e-16
1uoh_A	226	Human Gankyrin Length = 226		4e-14
1uoh_A	226	Human Gankyrin Length = 226		5e-13
1uoh_A	226	Human Gankyrin Length = 226		6e-11
1uoh_A	226	Human Gankyrin Length = 226		6e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-16
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-14
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-13
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-16
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-14
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-11
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-16
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-16
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-14
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-11
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-16
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-12
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		7e-16
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		6e-15
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		6e-11
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-14
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-14
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-11
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-11
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-13
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-14
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-14
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-12
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-13
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-13
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-13
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-13
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		7e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-12
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-11
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-11
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-11
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-11
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		9e-08
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-11
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		8e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-07
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		1e-10
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-09
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-10
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		4e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-10
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-08
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-10
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		7e-10
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-08
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-10
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-09
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-08
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		9e-05
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-10
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		8e-09
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-10
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		7e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-09
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-09
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-07
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-09
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		7e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		9e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		8e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-08
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-06
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		5e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-06
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		6e-08
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-07
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		6e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-06
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		1e-06
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		4e-06
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		1e-06
3deo_A	183	Structural Basis For Specific Substrate Recognition		5e-06
3deo_A	183	Structural Basis For Specific Substrate Recognition		2e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-06
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-06
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-04
1dc2_A	156	Solution Nmr Structure Of Tumor Suppressor P16ink4a		2e-06
1dc2_A	156	Solution Nmr Structure Of Tumor Suppressor P16ink4a		4e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		7e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		7e-04
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		3e-06
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		3e-04
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		3e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		5e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-06
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		7e-06
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		8e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		8e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		3e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		4e-05
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		4e-05
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		4e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 173/368 (47%), Gaps = 43/368 (11%)
Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
           +T L++AA  G  +  + LL+  A +N    +  TPL  A+  GH+ +VKLLL++ A+ N
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 439 CSDMGGRTALRAAAWGGHLEVTIVL------------------------GPLCVVKLLLA 474
            +   G T L  AA  GH+E  + L                        G + V +LLL 
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
             AH NAA   G T L  + +  + DIV  +L      +    +G T L ++A       
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA-----KQ 222
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
              +V   LL+ G   + E  +G+TPL +AA EGH ++  +LL  +A+ +  +KSG TPL
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 282
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654
              A  GH     +L+  G  VD     G T L VA+  GNI +V  LL           
Sbjct: 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--------- 333
Query: 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
                  D   +   G++PLH AA +GH ++   LL+ GA  ++V +DG  PL +A + G
Sbjct: 334 -----QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Query: 715 HYHLVEMF 722
           +  + ++ 
Sbjct: 389 YISVTDVL 396

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 139/287 (48%), Gaps = 20/287 (6%)
Query: 457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
           L V   +G L +VK LL  GA  N ++ +  T L  +A  GH ++   +L+  A +N + 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
            D +T L  +A       G+  +V +LLE  A  +     G TPL +AA EGH +    L
Sbjct: 78  KDDQTPLHCAARI-----GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           LE EA Q  + K G TPL  AA  G      LLL   A+ +     G T L VA    N+
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
           D+V  LL RG       G   + + +       G+TPLH AA +   EV R+LL+ G   
Sbjct: 193 DIVKLLLPRG-------GSPHSPAWN-------GYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
           +     G  PL LAAQ+GH  +V + L + +AN N  +  G T L +
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHL 284

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGC 651
           TPL  A+ MGH   V  LL  GA  +  + +  T L +AA  G+ +V   LL     +  
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 652 LAGGRQT-------------------GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
            A   QT                    + +       G TPLH AA EGH E   ALLE 
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
            A    +   G  PL +AA+ G   + E+ LE+ +A+ N    +G T L V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHV 185

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 159/388 (40%), Gaps = 61/388 (15%)
Query: 625 TVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEE 684
           T L VA+  G++ +V  LL RG             ++  +       TPLH AA  GH E
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRG-------ASPNVSNVKVE-------TPLHMAARAGHTE 61
Query: 685 VCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVN 744
           V + LL+  AKV+    D + PL  AA+ GH ++V++ LE   AN N  +  G T L + 
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIA 120
Query: 745 MKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHIL---R 801
            +            +  +  +L+ L     +   TK   T  H++ +  K R+  L   R
Sbjct: 121 AR------------EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 802 KIISIANNE------HIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIH----------A 845
                A  +      H+ + H++     L +      +  + N    +H          A
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 228
Query: 846 VDLSQRRQTSSSSAVPSATDEHFS-RDTHMRII-----------LGSSKVGEKISIAAQE 893
             L Q   ++++ +V   T  H + ++ H  ++           LG+      + + AQE
Sbjct: 229 RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288
Query: 894 GHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD--SEYFVHYYYY 951
           GH     +L+ +G     +   G     VA+  G+  +++ L Q+  D  ++  + Y   
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 348
Query: 952 YNSAKSGH-ETVLRLLKQYADDIPVVSD 978
           + +A+ GH + V  LLK  A    V SD
Sbjct: 349 HQAAQQGHTDIVTLLLKNGASPNEVSSD 376

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+ L+E GA++N +D +G TPL  A+  GH  VVKLL+  GADVN  D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
           RT L  AA  GH E         VVKLL++ GA VNA DS+GRT L  +A  GH ++V  
Sbjct: 71  RTPLHHAAENGHKE---------VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           ++   AD+N  D+DGRT L ++        G  +VV +L ++G 
Sbjct: 122 LISKGADVNTSDSDGRTPLDLA-----REHGNEEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           LI +A  G+ D V  ++E  AD+N  D+DGRT L  +A      +G+ +VV +L+ KGA 
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAA-----ENGHKEVVKLLISKGAD 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+ +D +G TPL  AA  GH++V ++L+   AD +  D  GRTPL  AA  GH   V LL
Sbjct: 63  VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
           +  GA V+T D++GRT L +A   GN +VV  L  +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  110 bits (274), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 94/165 (56%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           L+ AA  G++D  + L+EN AD +  D  GRTPL  AA  GH   V LL+  GA V+  D
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           ++GRT L  AA  G+ +VV  L+ +G               D   +D+ G TPLH+AA  
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGA--------------DVNAKDSDGRTPLHHAAEN 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           GH+EV + L+  GA V+  D+DGR PL LA + G+  +V++  +Q
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 8/98 (8%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL-KQYA 939
           S++G+++  AA+ G++D V+ L+  GAD   SD  GR     AA++GH+ V++LL  + A
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 940 D----DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           D    DS+     ++   +A++GH+ V++LL     D+
Sbjct: 62  DVNAKDSDGRTPLHH---AAENGHKEVVKLLISKGADV 96

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  119 bits (298), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+ L+E GA++N +D +G TPL  A+  GH  +VKLL+  GADVN  D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
           RT L  AA  GH E         +VKLL++ GA VNA DS+GRT L  +A  GH +IV  
Sbjct: 71  RTPLHYAAKEGHKE---------IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           ++   AD+N  D+DGRT L ++        G  ++V +L ++G 
Sbjct: 122 LISKGADVNTSDSDGRTPLDLA-----REHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  116 bits (291), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 5/157 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           LI +A  G+ D V  ++E  AD+N  D+DGRT L  +A      +G+ ++V +L+ KGA 
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-----KEGHKEIVKLLISKGAD 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+ +D +G TPL  AA EGH+++ ++L+   AD +  D  GRTPL  AA  GH   V LL
Sbjct: 63  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
           +  GA V+T D++GRT L +A   GN ++V  L  +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           L+ AA  G++D  + L+EN AD +  D  GRTPL  AA  GH   V LL+  GA V+  D
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           ++GRT L  AA +G+ ++V  L+ +G               D   +D+ G TPLHYAA E
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGA--------------DVNAKDSDGRTPLHYAAKE 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           GH+E+ + L+  GA V+  D+DGR PL LA + G+  +V++  +Q
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL-KQYA 939
           S++G+++  AA+ G++D V+ L+  GAD   SD  GR     AAK GH+ +++LL  + A
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 940 D----DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           D    DS+     +Y   +AK GH+ +++LL     D+
Sbjct: 62  DVNAKDSDGRTPLHY---AAKEGHKEIVKLLISKGADV 96

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score =  119 bits (297), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  GWTPL  A++ GH  +V++LL++GADVN  D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T LR AA  GHLE         +V++LL  GA VNA D EG T L  +A  GH +IV  
Sbjct: 81  MTPLRLAALFGHLE---------IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+  AD+N QD  G+TA  +S
Sbjct: 132 LLKNGADVNAQDKFGKTAFDIS 153

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA+ GHLE+         V++LL 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA D  G T L  +A  GH +IV  +L+  AD+N  D +G T L ++A+      
Sbjct: 69  NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N +D  G T L ++A      +G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-----NGHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D  GMTPL +AA  GH ++ E+LL+N AD +  D  G TPL  AA  GH   V +L
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L  GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D SG TPL  AA  GH   V +LL  GA V+ +D
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA  G++++V  LL  G               D    D  G TPLH AA+ 
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGA--------------DVNANDMEGHTPLHLAAMF 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 92/164 (56%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+ LLE GA+ N +D +G TPL  A+  GH  +VKLLL  GAD N  D  G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
           RT L  AA  GH E         +VKLLL+ GA  NA DS+GRT L  +A  GH +IV  
Sbjct: 71  RTPLHYAAENGHKE---------IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           +L   AD N  D+DGRT L ++        G  ++V +L ++G 
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLA-----REHGNEEIVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           L+ AA  G++D  + LLEN AD +  D  GRTPL  AA  GH   V LLL  GA  +  D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           ++GRT L  AA  G+ ++V  LL +G               D   +D+ G TPLHYAA  
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGA--------------DPNAKDSDGRTPLHYAAEN 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           GH+E+ + LL  GA  +  D+DGR PL LA + G+  +V++  +Q
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 8/91 (8%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL----- 935
           S++G+++  AA+ G++D V+ LL  GADP  SD  GR     AA++GH+ +++LL     
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 936 KQYADDSEYFVHYYYYYNSAKSGHETVLRLL 966
              A DS+     +Y   +A++GH+ +++LL
Sbjct: 62  DPNAKDSDGRTPLHY---AAENGHKEIVKLL 89

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+ LLE GA++N +D +G TPL  A+  GH  VVKLLL  GAD N  D  G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
           +T L  AA  GH E         VVKLLL+ GA  NA DS+G+T L  +A  GH ++V  
Sbjct: 71  KTPLHLAAENGHKE---------VVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           +L   AD N  D+DGRT L ++        G  +VV +L ++G 
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLA-----REHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           LI +A  G+ D V  +LE  AD+N  D+DG+T L ++A      +G+ +VV +LL +GA 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAA-----ENGHKEVVKLLLSQGAD 62
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
            + +D +G TPL +AA  GH++V ++LL   AD +  D  G+TPL  AA  GH   V LL
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
           L  GA  +T D++GRT L +A   GN +VV  L  +G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 92/165 (55%), Gaps = 14/165 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           L+ AA  G++D  + LLEN AD +  D  G+TPL  AA  GH   V LLL  GA  +  D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           ++G+T L +AA  G+ +VV  LL +G               D   +D+ G TPLH AA  
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGA--------------DPNAKDSDGKTPLHLAAEN 113
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           GH+EV + LL  GA  +  D+DGR PL LA + G+  +V++  +Q
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 11/98 (11%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR-LLKQYAD----D 941
           + +AA+ GH++ V+LLL  GADP   D  G+    +AA++GH+ V++ LL Q AD    D
Sbjct: 41  LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 942 SEYFVHYYYYYNSAKSGHETVLR-LLKQYADDIPVVSD 978
           S+     +    +A++GH+ V++ LL Q AD  P  SD
Sbjct: 101 SDGKTPLHL---AAENGHKEVVKLLLSQGAD--PNTSD 133

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  115 bits (287), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/134 (50%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
           +G+T L++AA  G ++ V++LLEAGA++N  D  G TPL  A+  GH  VVKLLL++GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
           VN  D  GRT L  AA  GHLE         VVKLLL AGA VNA D  GRT L  +A  
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 497 GHADIVSSILEYDA 510
           GH ++V  +LE  A
Sbjct: 112 GHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  105 bits (263), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 14/138 (10%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
           GRT L  AA  GHLEV         VKLLL AGA VNA D  GRT L  +A  GH ++V 
Sbjct: 2   GRTPLHLAARNGHLEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563
            +LE  AD+N +D +GRT L ++A      +G+ +VV +LLE GA V+ +D+ G TPL +
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Query: 564 AAFEGHRDVCEILLENEA 581
           AA  GH +V ++LLE  A
Sbjct: 108 AARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 5/130 (3%)
Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
           GRT L  +A  GH ++V  +LE  AD+N +D +GRT L ++A      +G+ +VV +LLE
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
            GA V+ +D+ G TPL +AA  GH +V ++LLE  AD +  DK+GRTPL  AA  GH   
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 606 VALLLFWGAY 615
           V LLL  GAY
Sbjct: 117 VKLLLEAGAY 126

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  100 bits (249), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/136 (45%), Positives = 78/136 (57%), Gaps = 14/136 (10%)
Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
           +GRTPL  AA  GH   V LLL  GA V+  D  GRT L +AA  G+++VV  LL+ G  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
                        D   +D  G TPLH AA  GH EV + LLEAGA V+  D +GR PL 
Sbjct: 60  -------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Query: 709 LAAQDGHYHLVEMFLE 724
           LAA++GH  +V++ LE
Sbjct: 107 LAARNGHLEVVKLLLE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD--SEY 944
           + +AA+ GH + V+LLL  GAD    D  GR    +AA++GH  V++LL +   D  ++ 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 945 FVHYYYYYNSAKSGHETVLRLLKQYADDI 973
                  + +A++GH  V++LL +   D+
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADV 94

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score =  114 bits (285), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/142 (45%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  GWTPL  A++ GH  +V++LL++GADVN  D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D  G T L  +A  GH +IV  
Sbjct: 81  STPLHLAAHFGHLE---------IVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+Y AD+N QD  G+TA  +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score =  100 bits (249), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN +D+ G T L  AA+ GHLE+         V++LL 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA D+ G T L  +A+ GH +IV  +L+  AD+N +D++G T L ++A     + 
Sbjct: 69  NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA-----NR 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  D  G T L ++A       G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYW-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D  G TPL +AA  GH ++ E+LL+N AD +  D +G TPL  AA+ GH   V +L
Sbjct: 73  VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L +GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D  G TPL  AA  GH   V +LL  GA V+  D
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA  G++++V  LL  G               D   +D+ G TPLH AA  
Sbjct: 78  TLGSTPLHLAAHFGHLEIVEVLLKNGA--------------DVNAKDDNGITPLHLAANR 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  112 bits (281), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N TD +G+TPL  A+  GH  +V++LL++GADVN SD+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D++G T L  +A  GH +IV  
Sbjct: 81  ITPLHLAAATGHLE---------IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G+TA  +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN +D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA+D  G T L  +A  GH +IV  +L++ AD+N  DNDG T L ++A       
Sbjct: 69  NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  DNDG T L ++A     S+G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAA-----SNGHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D  G+TPL +AA  GH ++ E+LL++ AD +  D  G TPL  AA  GH   V +L
Sbjct: 73  VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
           L  GA V+  D  G+T   ++   GN D+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L  AA  G    V +L+  GA V+  D +G T L +AA+ G++++V  LL  G       
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   D    D  G TPLH AA  GH E+   LL+ GA V+  DNDG  PL LAA+ 
Sbjct: 72  --------DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
           GH  +VE+ L ++ A+VN +   G+TA  +++ N
Sbjct: 124 GHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD   +D+ G     +AA +GH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
           AD ++         + +A +GH E V  LLK  AD
Sbjct: 71  ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  110 bits (276), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI---------VEVLLK 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
           AGA VNA D +G T L  +A  GH +IV  +L+  AD+N +D DG T L ++A      +
Sbjct: 57  AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-----RE 111
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G TP  +A  EGH D+ E+L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  101 bits (252), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 86/162 (53%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  DK G TPL  AA  GH   V +LL  GA V+  D
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
            +G T L +AA +G++++V  LL  G               D   +D  G+TPLH AA E
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGA--------------DVNAKDKDGYTPLHLAARE 111
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+AGA V+  D  G+ P  LA ++GH  + E+ 
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD- 940
           +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA+ GH E V  LLK  AD 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 941 DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
           +++    Y   + +A+ GH E V  LLK  AD
Sbjct: 62  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score =  110 bits (275), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N TD  G TPL  A+  GH  +V++LL+ GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D EG T L  +AY GH +IV  
Sbjct: 81  ATPLHLAADNGHLE---------IVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+Y AD+N QD  G+TA  +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V++L+A GA VNA D  G T L  +A  GH +IV  +L+Y AD+N  DN G T L ++A 
Sbjct: 30  VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA- 88
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
                +G+ ++V +LL+ GA V+ +D EG TPL +AA++GH ++ E+LL+  AD +  DK
Sbjct: 89  ----DNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Query: 589 SGRT 592
            G+T
Sbjct: 145 FGKT 148

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D  G TPL  AA  GH   V +LL +GA V+  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA  G++++V  LL  G               D   +D  G+TPLH AA +
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLLKHGA--------------DVNAKDYEGFTPLHLAAYD 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
           S +G+K+  AA+ G +D VR+L+  GAD   +D  G     +AAK+GH  ++ +L +Y  
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 941 DSEYFVHY--YYYYNSAKSGHETVLRLLKQYADDI 973
           D   + +Y     + +A +GH  ++ +L ++  D+
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  110 bits (275), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/142 (45%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D +G+TPL  A+  GH  +V++LL++GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL AGA VNA D +G T L  +A  GH +IV  
Sbjct: 81  YTPLHLAAREGHLE---------IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+  AD+N QD  G+TA  +S
Sbjct: 132 LLKAGADVNAQDKFGKTAFDIS 153

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  102 bits (254), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
           AGA VNA D +G T L  +A  GH +IV  +L+  AD+N +D DG T L ++A      +
Sbjct: 69  AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-----RE 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  100 bits (249), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N +D DG T L ++A      +G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-----REGHLEIVEVLLKAGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+ +D++G TPL +AA EGH ++ E+LL+  AD +  DK G TPL  AA  GH   V +L
Sbjct: 73  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L  GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  DK G TPL  AA  GH   V +LL  GA V+  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
            +G T L +AA +G++++V  LL  G               D   +D  G+TPLH AA E
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAGA--------------DVNAKDKDGYTPLHLAARE 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+AGA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
           S +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA+ GH E V  LLK  A
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 940 D-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
           D +++    Y   + +A+ GH E V  LLK  AD
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N TD  G TPL  A+  GH  +V++LL+ GADVN  D+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D+ G T L  +A MGH +IV  
Sbjct: 81  STPLHLAALIGHLE---------IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G+TA  +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN +D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA D  G T L  +A +GH +IV  +L++ AD+N  D  G T L ++A+      
Sbjct: 69  HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D SG TPL  AA+ GH   V +LL  GA V+ ID
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA  G++++V  LL  G               D    D  G TPLH AAI 
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHGA--------------DVNAVDTWGDTPLHLAAIM 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD   +D  G     +AA  GH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVV 976
           AD ++         + +A  GH  ++ +L ++  D+  V
Sbjct: 71  ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 88/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N +D  GWTPL  A++ GH  +V++LL++GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         VV++LL  GA VNA D  G T L  +A +GH +IV  
Sbjct: 81  VTPLHLAADRGHLE---------VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G+TA  +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN SD  G T L  AA+ GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA DS G T L  +A  GH ++V  +L+  AD+N  D++G T L ++A       
Sbjct: 69  NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  D+ G T L ++A       G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYF-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+ +D  G+TPL +AA  GH +V E+LL+N AD +  D +G TPL  AA++GH   V +L
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
           L  GA V+  D  G+T   ++   GN D+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D  G TPL  AA  GH   V +LL  GA V+  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           + G T L +AA +G+++VV  LL  G               D    D+ G+TPLH AA  
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGA--------------DVNANDHNGFTPLHLAANI 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           D    D+ GWTPLH AA  GH E+   LL+ GA V+  D+ G  PL LAA  GH  +VE+
Sbjct: 39  DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDL 777
            L+   A+VN   H+G T L +   N+  L    +L++   ++     F  T  D+
Sbjct: 99  LLKNG-ADVNANDHNGFTPLHL-AANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD   SDH G     +AA  GH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
           AD +++  +     + +A  GH E V  LLK  AD
Sbjct: 71  ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N TD  G TPL  A+  GH  +V++LL+ GADVN  D+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D+ G T L  +A MGH +IV  
Sbjct: 81  STPLHLAALIGHLE---------IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G+TA  +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN +D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA D  G T L  +A +GH +IV  +L++ AD+N  D  G T L ++A+      
Sbjct: 69  HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D SG TPL  AA+ GH   V +LL  GA V+ ID
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA  G++++V  LL  G               D    D  G TPLH AAI 
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHGA--------------DVNAVDTWGDTPLHLAAIM 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD   +D  G     +AA  GH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVV 976
           AD ++   +     + +A  GH  ++ +L ++  D+  V
Sbjct: 71  ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  GWTPL  A+  GH  +V++LL++GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA+DS G T L  +A  GH +IV  
Sbjct: 81  VTPLHLAARRGHLE---------IVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+  AD+N QD  G+TA  +S
Sbjct: 132 LLKNGADVNAQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA DS G T L  +A  GH +IV  +L+  AD+N  D+ G T L ++A       
Sbjct: 69  NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA-----KR 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N +D  G T L ++A       G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHF-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+ +D  G+TPL +AA  GH ++ E+LL+N AD +  D  G TPL  AA  GH   V +L
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L  GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D +G TPL  AA  GH   V +LL  GA V+  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           + G T L +AA +G++++V  LL  G               D    D+ G+TPLH AA  
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGA--------------DVNASDSHGFTPLHLAAKR 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA  GH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
           AD +++  +     + +A+ GH E V  LLK  AD
Sbjct: 71  ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score =  107 bits (266), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA+ N  D  G TPL  A+  GH  +V++LL++GADVN  D  G
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D+ G T L  +AY GH +IV  
Sbjct: 69  TTPLHLAASLGHLE---------IVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G+TA  +S
Sbjct: 120 LLKHGADVNAQDKFGKTAFDIS 141

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GAD N  D  GRT L  AA  GHLE+         V++LL 
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEI---------VEVLLR 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA D+ G T L  +A +GH +IV  +L+Y AD+N +D  G T L ++A       
Sbjct: 57  NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW----- 111
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 112 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD N  D+ GRT L ++A     + G+ ++V +LL  GA 
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAA-----AVGHLEIVEVLLRNGAD 60
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D  G TPL +AA  GH ++ E+LL+  AD +  D +G TPL+ AA  GH   V +L
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L  GA V+  D  G+T   ++   GN D+   L
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D  GRTPL  AA++GH   V +LL  GA V+ +D
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA+ G++++V  LL  G               D   +D  G TPL+ AA  
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKYGA--------------DVNAKDATGITPLYLAAYW 111
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++   G+  L E+ 
Sbjct: 112 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADD 941
           +G+K+  AA+ G +D VR+L+  GAD    DH GR    +AA  GH E V  LL+  AD 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 942 SEYFVHYYYYYNSAKS-GHETVLRLLKQYADDI 973
           +    +     + A S GH  ++ +L +Y  D+
Sbjct: 62  NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  106 bits (265), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D +G+TPL  A+  GH  +V++LL++GADVN  D  G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL AGA VNA D +G T L  +A  GH +IV  
Sbjct: 69  YTPLHLAAREGHLE---------IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+  AD+N QD  G+T   ++
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  106 bits (264), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI---------VEVLLK 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
           AGA VNA D +G T L  +A  GH +IV  +L+  AD+N +D DG T L ++A      +
Sbjct: 57  AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-----RE 111
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G TP  +A   G+ D+ E+L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  100 bits (250), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N +D DG T L ++A      +G+ ++V +LL+ GA 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-----REGHLEIVEVLLKAGAD 60
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+ +D++G TPL +AA EGH ++ E+LL+  AD +  DK G TPL  AA  GH   V +L
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L  GA V+  D  G+T   +A   GN D+   L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  DK G TPL  AA  GH   V +LL  GA V+  D
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
            +G T L +AA +G++++V  LL  G               D   +D  G+TPLH AA E
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGA--------------DVNAKDKDGYTPLHLAARE 111
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+AGA V+  D  G+ P  LA  +G+  + E+ 
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD- 940
           +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA+ GH E V  LLK  AD 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 941 DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
           +++    Y   + +A+ GH E V  LLK  AD
Sbjct: 62  NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  106 bits (265), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  G TPL  A+  GH  +V++LL+ GADVN +D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D+ G T L  +A  GH +IV  
Sbjct: 81  DTPLHLAALYGHLE---------IVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+Y AD+N QD  G+TA  +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N +D+ G+T L ++A+      G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-----KGHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D+ G TPL +AA  GH ++ E+LL+N AD +  D  G TPL  AA  GH   V +L
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L +GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D SG+TPL  AA  GH   V +LL  GA V+  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA  G++++V  LL  G               D    D  G+TPLH AA  
Sbjct: 78  KMGDTPLHLAALYGHLEIVEVLLKNGA--------------DVNATDTYGFTPLHLAADA 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score =  106 bits (264), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  G TPL  A++ GH  +V++LL+ GADV+ SD+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA+ GHLE         +V++LL  GA VNA DS+G T L  +A  G+ +IV  
Sbjct: 81  YTPLHLAAYWGHLE---------IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G+TA  +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN +D  G T L  AA+ GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA V+A+D  G T L  +AY GH +IV  +L+  AD+N  D+DG T L ++A       
Sbjct: 69  HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW----- 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           GY ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  DN G T L ++A       G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYS-----GHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           VD  D  G TPL +AA+ GH ++ E+LL+N AD + +D  G TPL  AA  G+   V +L
Sbjct: 73  VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L  GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L  AA  G    V +L+  GA V+  D  G T L +AA  G++++V  LL  G       
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   D    D  G+TPLH AA  GH E+   LL+ GA V+ +D+DG  PL LAA+ 
Sbjct: 72  --------DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
           G+  +VE+ L ++ A+VN +   G+TA  +++ N
Sbjct: 124 GYLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 156

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G K+  AA+ G +D VR+L+  GAD   +D+ G     +AA SGH E V  LLK  
Sbjct: 11  GSDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
           AD D+     Y   + +A  GH E V  LLK  AD
Sbjct: 71  ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D +G TPL  A+W GH  +V++LL+ GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D+ G T L  +A  GH +IV  
Sbjct: 81  WTPLHLAADNGHLE---------IVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G+TA  +S
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AAW GH E+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA D++G T L  +A  GH +IV  +L+Y AD+N QD  G T L ++A       
Sbjct: 69  HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA-----DR 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V++L+A GA VNA D +G T L  +A++GH +IV  +L++ AD+N +D DG T L ++A 
Sbjct: 30  VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA- 88
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
                +G+ ++V +LL+ GA V+ +D  G+TPL +AA  GH ++ E+LL++ AD +  DK
Sbjct: 89  ----DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Query: 589 SGRT 592
            G+T
Sbjct: 145 FGKT 148

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  D+ G T L ++A       G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWI-----GHPEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D +G TPL +AA  GH ++ E+LL+  AD +  D  G TPL  AA  GH   V +L
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L  GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D  G TPL  AA +GH   V +LL  GA V+  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
            +G T L +AA  G++++V  LL  G               D   +D  G TPLH AA  
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGA--------------DVNAQDAYGLTPLHLAADR 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA  GH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 939 AD----DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           AD    D++ +   +    +A +GH  ++ +L +Y  D+
Sbjct: 71  ADVNARDTDGWTPLHL---AADNGHLEIVEVLLKYGADV 106

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score =  105 bits (261), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  G TPL      GH  ++++LL+  ADVN SD  G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA+ GHLE         +V++LL  GA VNA D +G T L  +A  GH +IV  
Sbjct: 81  WTPLHLAAYRGHLE---------IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+Y AD+N QD  G+TA  +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN +D  G T L      GHLE+         +++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEI---------IEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
             A VNA+D  G T L  +AY GH +IV  +L+Y AD+N  D  G T L ++A      D
Sbjct: 69  YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA-----ED 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  D  G T L +       ++G+ +++ +LL+  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVV-----NNGHLEIIEVLLKYAAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D+ G TPL +AA+ GH ++ E+LL+  AD + +D  G TPL  AA  GH   V +L
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L +GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L  AA  G    V +L+  GA V+  D  G T L +    G+++++  LL          
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY-------- 69
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                 + D    D  GWTPLH AA  GH E+   LL+ GA V+ +D  G  PL LAA+D
Sbjct: 70  ------AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
           GH  +VE+ L +Y A+VN +   G+TA  +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDN 156

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
           S +G+K+  AA+ G +D VR+L+  GAD   +D  G     +   +GH  ++ +L +YA 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 941 D--SEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           D  +     +   + +A  GH  ++ +L +Y  D+
Sbjct: 72  DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  G TPL  A+  GH  +V++LL++GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D+ G T L  +A  GH +IV  
Sbjct: 81  STPLHLAAKRGHLE---------IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+Y AD+N QD  G+TA  +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA D  G T L  +A  GH +IV  +L+Y AD+N  D  G T L ++A       
Sbjct: 69  NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA-----DT 123
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N +D  G T L ++A       G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARV-----GHLEIVEVLLKNGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D  G TPL +AA  GH ++ E+LL+  AD +  D  G TPL  AA  GH   V +L
Sbjct: 73  VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           L +GA V+  D  G+T   ++   GN D+   L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D  G TPL  AA +GH   V +LL  GA V+ +D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L +AA +G++++V  LL  G               D    D  G TPLH AA  
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGA--------------DVNADDTIGSTPLHLAADT 123
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           GH E+   LL+ GA V+  D  G+    ++  +G+  L E+ 
Sbjct: 124 GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA+ GH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           AD ++  F      + +AK GH  ++ +L +Y  D+
Sbjct: 71  ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  G TPL  A+  GH  +V++LL+ GADV+ +D+ G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA  GHLE         +V++LL  GA VNA D  G T L  +A  GH +IV  
Sbjct: 81  FTPLHLAAMTGHLE---------IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L+Y AD+N QD  G+TA  +S
Sbjct: 132 LLKYGADVNAQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  DN G T L ++A+      G+ ++V +LL+ GA 
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS-----GHLEIVEVLLKHGAD 72
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           VD  D  G TPL +AA  GH ++ E+LL+  AD +  D +G TPL  AA  GH   V +L
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
           L +GA V+  D  G+T   ++   GN D+
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L  AA  G    V +L+  GA V+ +D  G T L +AA  G++++V  LL  G       
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA------ 71
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   D    D  G+TPLH AA+ GH E+   LL+ GA V+  D  G  PL LAA +
Sbjct: 72  --------DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
           GH  +VE+ L +Y A+VN +   G+TA  +++ N
Sbjct: 124 GHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDN 156

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  AA+ G +D VR+L+  GAD    D+ G     +AA SGH E V  LLK  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 939 AD-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           AD D+     +   + +A +GH  ++ +L +Y  D+
Sbjct: 71  ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N TD  G TPL  A+  G   +V++LL++GADVN SD  G
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
            T L  AA+ GHLE         +V++LL  GA VNA D  G T L  +A  G  +IV  
Sbjct: 73  ITPLHLAAYDGHLE---------IVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +L++ AD+N QD  G TA  +S
Sbjct: 124 LLKHGADVNAQDALGLTAFDIS 145

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN +D  G T L  AA  G LE+         V++LL 
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEI---------VEVLLK 60
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD 534
            GA VNA+DS G T L  +AY GH +IV  +L++ AD+N  D  G T L ++AL      
Sbjct: 61  NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS----- 115
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           G  ++V +LL+ GA V+ +D  G+T   ++  +G  D+ EIL
Sbjct: 116 GQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G  D V  ++   AD+N  D++G T L ++A     ++G  ++V +LL+ GA 
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAA-----ANGQLEIVEVLLKNGAD 64
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V+  D  G+TPL +AA++GH ++ E+LL++ AD +  D++G TPL  AA  G    V +L
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
           L  GA V+  DA G T   ++  QG  D+
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDL 153

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  D +G TPL  AA+ G    V +LL  GA V+  D
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           + G T L +AA  G++++V  LL  G               D    D  GWTPLH AA+ 
Sbjct: 70  SAGITPLHLAAYDGHLEIVEVLLKHGA--------------DVNAYDRAGWTPLHLAALS 115
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           G  E+   LL+ GA V+  D  G     ++   G   L E+ 
Sbjct: 116 GQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           G+ +L  AAA G  D V  L+  G               D    D+ G TPLH AA  G 
Sbjct: 7   GKKLLEAAAA-GQDDEVRILMANGA--------------DVNATDDNGLTPLHLAAANGQ 51
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR 742
            E+   LL+ GA V+  D+ G  PL LAA DGH  +VE+ L ++ A+VN     G T L 
Sbjct: 52  LEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLH 110
Query: 743 V 743
           +
Sbjct: 111 L 111

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 15/225 (6%)
Query: 413 TPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLL 472
           +PL +A+  GH  +  +L+Q+GA+++      RT L  AA   HLE          VK L
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA---------VKYL 63
Query: 473 LAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVP 531
           + AGA V+  D+EG T L  +A  GH ++V  +L     D+N QD+ G T +  +     
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA----- 118
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
           +   +  +V +LL KG+ ++  D E    L  AAF G  D+ EILL  + D   ++  G 
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           +PL  AA      CV L L   + V   + EG T L  A+    +
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 23/214 (10%)
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
           K++H+++   +PL  AA  GH D+C +L++  A+ D   +  RTPL  AA   H   V  
Sbjct: 5   KMEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG-MILGCLAGGRQTGSL------ 661
           L+  GA VD  DAEG T L +AA +G+ +VV  LL  G M + C   G  T  +      
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 662 -------------DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
                        D   RDN     LH+AA  G  ++   LL A   +  V+  G +PL 
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR 742
           +AA++  Y  V +FL + +++V  K+ +G T L+
Sbjct: 183 IAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQ 215

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 134/290 (46%), Gaps = 37/290 (12%)
Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
           D    T L++AA    V  VQ+LL+ GA+++  D  G  PL +A   GH  V +LLL+ G
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL---- 490
           A VN  D+   T L  AA    +EV           LLL+ GA     +  G++A+    
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEV---------CSLLLSHGADPTLVNCHGKSAVDMAP 165
Query: 491 -------IASAYMGH--------ADI--VSSILEYDADINQQDNDGRTALSVSALCVPSS 533
                  +   + GH        AD+  V   L  +    +Q     TAL  +   +   
Sbjct: 166 TPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK 225
Query: 534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
               +V  +LL KGA V+ ++++ MTPL VAA   H DV E+L ++ A  + +D  G+T 
Sbjct: 226 --RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
           L  AA  GH     LLL +G+    I  +G T     AAQ   + V Q+L
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFT-----AAQMGNEAVQQIL 328

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 131/320 (40%), Gaps = 56/320 (17%)
Query: 385 AAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443
           AA  G  + +  LL     N + +D    TPL  A+      +V+LLLQ GADV+  D G
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
           G   L  A   GH EVT         +LLL  GA VNA D    T L  +A     ++ S
Sbjct: 91  GLVPLHNACSYGHYEVT---------ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT---- 559
            +L + AD    +  G++A+ ++    P+                    E RE +T    
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMA----PTP-------------------ELRERLTYEFK 178
Query: 560 --PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA---SCVALLLFWGA 614
              LL AA E      +  L  E       +S  T L  A +  H        LLL  GA
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238
Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
            V+  + +  T L VAA + + DV+  L   G  +  L              D+ G T L
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL--------------DSLGQTAL 284
Query: 675 HYAAIEGHEEVCRALLEAGA 694
           H AA+ GH + CR LL  G+
Sbjct: 285 HRAALAGHLQTCRLLLSYGS 304

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 138/307 (44%), Gaps = 52/307 (16%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ +A  G+ + + ++L    ++N   +DGR +   + L + +     ++V +LL+ GA 
Sbjct: 28  LLEAARSGNEEKLMALL-TPLNVNCHASDGRKS---TPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           V  +D+ G+ PL  A   GH +V E+LL++ A  + +D    TPL  AAS       +LL
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 610 LFWGAYVDTIDAEGRTVLSVA---------------------AAQGNIDVVNQLLDRGMI 648
           L  GA    ++  G++ + +A                     A + ++  V + L   +I
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203
Query: 649 -----------LGCLAGG-------------RQTGSLDEQHRDNCGWTPLHYAAIEGHEE 684
                      L C                 R+  +++E+++D    TPLH AA   H +
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF--MTPLHVAAERAHND 261
Query: 685 VCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVN 744
           V   L + GAK++ +D+ G+  L  AA  GH     + L  Y ++ +  S  G TA ++ 
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTAAQMG 320
Query: 745 MKNVTKL 751
            + V ++
Sbjct: 321 NEAVQQI 327

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 23/291 (7%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
           ++  +L K     +++L++  L+    ++ +  ++ G T L+ A      D V++LL  G
Sbjct: 24  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHG 82
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
           A+       G TP   A+  G   ++KL L  GADVN  D  G TA   AA         
Sbjct: 83  ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------- 133
Query: 462 VLGPLCVVKLLLAAGAHVN-----AADSE-----GRTALIASAYMGHADIVSSIL-EYDA 510
           V G +  +K L   GA+VN       D E     G TAL+ +A  GH +++  +L E  A
Sbjct: 134 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 193
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
           D+N  DN GR AL  + L    SD  A +  +LL+ GA V+     G TPL++A  + H 
Sbjct: 194 DVNACDNMGRNALIHALLSSDDSDVEA-ITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 571 DVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
            + + LLE E  + +  D  G+T L  A  +       LL   GA  D  D
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 539 VVSILLEKGAKVDHEDREG-MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
           +V  LLE GA V+ ++ EG  TPL  A      D+ E+LL + AD     K+G TP   A
Sbjct: 40  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
Query: 598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ 657
           A  G    + L L  GA V+  D  G T    AA  G +  +  L  RG  +      R+
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL----RR 155
Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAGAKVDQVDNDGR------------ 704
               D++     G T L  AA +GH EV + LL E GA V+  DN GR            
Sbjct: 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 215
Query: 705 -------------------------APLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
                                     PLILA +  H  LV+  LEQ    +N    DG+T
Sbjct: 216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 275
Query: 740 AL 741
           AL
Sbjct: 276 AL 277

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 23/291 (7%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
           ++  +L K     +++L++  L+    ++ +  ++ G T L+ A      D V++LL  G
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
           A+       G TP   A+  G   ++KL L  GADVN  D  G TA   AA         
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------- 113
Query: 462 VLGPLCVVKLLLAAGAHVN-----AADSE-----GRTALIASAYMGHADIVSSIL-EYDA 510
           V G +  +K L   GA+VN       D E     G TAL+ +A  GH +++  +L E  A
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
           D+N  DN GR AL  + L    SD  A +  +LL+ GA V+     G TPL++A  + H 
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEA-ITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 571 DVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
            + + LLE E  + +  D  G+T L  A  +       LL   GA  D  D
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 539 VVSILLEKGAKVDHEDREGM-TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
           +V  LLE GA V+ ++ EG  TPL  A      D+ E+LL + AD     K+G TP   A
Sbjct: 20  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ 657
           A  G    + L L  GA V+  D  G T    AA  G +  +  L  RG  +      R+
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL----RR 135
Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAGAKVDQVDNDGR------------ 704
               D++     G T L  AA +GH EV + LL E GA V+  DN GR            
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195
Query: 705 -------------------------APLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
                                     PLILA +  H  LV+  LEQ    +N    DG+T
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255
Query: 740 AL 741
           AL
Sbjct: 256 AL 257

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 9/102 (8%)
Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
           +G+T L++AA  G ++ V++LLEAGA++N  D  G TPL  A+  GH  VVKLLL++GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478
           VN  D  GRT L  AA  GHLE         VVKLLL AGA+
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGAY 93

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
           GRT L  AA  GHLEV         VKLLL AGA VNA D  GRT L  +A  GH ++V 
Sbjct: 2   GRTPLHLAARNGHLEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
            +LE  AD+N +D +GRT L ++A      +G+ +VV +LLE GA
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
           +GRT L ++A      +G+ +VV +LLE GA V+ +D+ G TPL +AA  GH +V ++LL
Sbjct: 1   NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
           E  AD +  DK+GRTPL  AA  GH   V LLL  GAY
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 14/102 (13%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           GRT L +AA  G+++VV  LL+ G               D   +D  G TPLH AA  GH
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA--------------DVNAKDKNGRTPLHLAARNGH 47
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
            EV + LLEAGA V+  D +GR PL LAA++GH  +V++ LE
Sbjct: 48  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
           G TPLH AA  GH EV + LLEAGA V+  D +GR PL LAA++GH  +V++ LE   A+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60
Query: 730 VNQKSHDGRTALRVNMKN 747
           VN K  +GRT L +  +N
Sbjct: 61  VNAKDKNGRTPLHLAARN 78

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD--SEY 944
           + +AA+ GH + V+LLL  GAD    D  GR    +AA++GH  V++LL +   D  ++ 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 945 FVHYYYYYNSAKSGHETVLRLL 966
                  + +A++GH  V++LL
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLL 87

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 31/233 (13%)
Query: 384 VAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG 443
            A   G  + V  LLE GA+IN+ + +G T L  A    +  +VK L+++GA++N  D  
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL-----IASAYMGH 498
           G   L AAA  G+L++          + L++ GAHV A +SEG T L      A   +  
Sbjct: 106 GWIPLHAAASCGYLDIA---------EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 499 ADIVSSILEYDADINQQD----------------NDGRTALS-VSALCVPSSDGYAKVVS 541
            ++    ++ +A   +++                ND R A S  +AL V ++ GY +V+ 
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
           +L++    V+ +D +G TPL  AA  G  + C IL+EN  D + ++K G+T  
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 110/263 (41%), Gaps = 46/263 (17%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
            +A+   G  + V  +LE  ADIN  + DG TAL  +  C+   D    +V  L+E GA 
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CI---DDNVDMVKFLVENGAN 98
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL--------------- 594
           ++  D EG  PL  AA  G+ D+ E L+   A    ++  G TPL               
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158
Query: 595 --------WAAASMGHASCVALLLFW---GAYVDTIDAE-GRTVLSVAAAQGNIDVVNQL 642
                    AA        +     W   G   D   A+ G T L VAAA+G  +V+  L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
           +                  D   +D  GWTPLH AA  G EE CR L+E    ++ V+  
Sbjct: 219 I--------------QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
Query: 703 GRAPLILAAQDGHYHLVEMFLEQ 725
           G+    +A +D   +L E+  +Q
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQ 287

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
            D+  +TAL+ A   G  + V+ LL+ G  +N  D  GW+PL  A+  G   +VK LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA VN  +  G T L  AA     E+ +         +LL  GA+ +A D    TA+  +
Sbjct: 96  GAQVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYEATAMHRA 146
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A  G+  ++  +L Y A  N QD +G T L ++  C       AK   +L+ +GA +  E
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA--CDEERVEEAK---LLVSQGASIYIE 201
Query: 554 DREGMTPLLVA 564
           ++E  TPL VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 483 DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542
           D + RTAL  +   GH +IV  +L+    +N +D+ G + L ++A     S G  ++V  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-----SAGRDEIVKA 91
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
           LL KGA+V+  ++ G TPL  AA +   ++  +LLE  A+ D  D    T +  AA+ G+
Sbjct: 92  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151
Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
              + +LL++ A  +  D EG T L +A  +  ++    L+ +G
Sbjct: 152 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 494 AYMGH-ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           AY G   ++  SIL   +   + D D RTAL  +      S G+ ++V  LL+ G  V+ 
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 68
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
           +D  G +PL +AA  G  ++ + LL   A  + ++++G TPL  AAS        +LL  
Sbjct: 69  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
           GA  D  D    T +  AAA+GN+ +++ LL                S + Q  D  G T
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILL------------YYKASTNIQ--DTEGNT 174
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
           PLH A  E   E  + L+  GA +   + + + PL +A
Sbjct: 175 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 565 AFEGH-RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
           A+ G   ++ E +L +++     D+  RT L  A S GH   V  LL  G  V+  D  G
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
            + L +AA+ G  ++V  LL +G          Q  ++++      G TPLHYAA +   
Sbjct: 74  WSPLHIAASAGRDEIVKALLGKGA---------QVNAVNQN-----GCTPLHYAASKNRH 119
Query: 684 EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
           E+   LLE GA  D  D+     +  AA  G+  ++ + L  Y+A+ N +  +G T L +
Sbjct: 120 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYKASTNIQDTEGNTPLHL 178

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
           D + RT L  A + G+ ++V  LL  G+ +                +D+ GW+PLH AA 
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 82
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
            G +E+ +ALL  GA+V+ V+ +G  PL  AA    + +  M LE   AN + K H   T
Sbjct: 83  AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEAT 141
Query: 740 AL-RVNMKNVTKLSFWYLLIQPLLNI 764
           A+ R   K   K+    L  +   NI
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNI 167

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
            D+  +TAL+ A   G  + V+ LL+ G  +N  D  GW+PL  A+  G   +VK LL  
Sbjct: 37  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA VN  +  G T L  AA     E+ +         +LL  GA+ +A D    TA+  +
Sbjct: 97  GAQVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYEATAMHRA 147
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A  G+  ++  +L Y A  N QD +G T L ++  C       AK   +L+ +GA +  E
Sbjct: 148 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA--CDEERVEEAK---LLVSQGASIYIE 202
Query: 554 DREGMTPLLVA 564
           ++E  TPL VA
Sbjct: 203 NKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 483 DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542
           D + RTAL  +   GH +IV  +L+    +N +D+ G + L ++A     S G  ++V  
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-----SAGRDEIVKA 92
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
           LL KGA+V+  ++ G TPL  AA +   ++  +LLE  A+ D  D    T +  AA+ G+
Sbjct: 93  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 152
Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
              + +LL++ A  +  D EG T L +A  +  ++    L+ +G
Sbjct: 153 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 494 AYMGH-ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           AY G   ++  SIL   +   + D D RTAL  +      S G+ ++V  LL+ G  V+ 
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 69
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
           +D  G +PL +AA  G  ++ + LL   A  + ++++G TPL  AAS        +LL  
Sbjct: 70  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
           GA  D  D    T +  AAA+GN+ +++ LL                S + Q  D  G T
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILL------------YYKASTNIQ--DTEGNT 175
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
           PLH A  E   E  + L+  GA +   + + + PL +A
Sbjct: 176 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 565 AFEGH-RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
           A+ G   ++ E +L +++     D+  RT L  A S GH   V  LL  G  V+  D  G
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
            + L +AA+ G  ++V  LL +G          Q  ++++      G TPLHYAA +   
Sbjct: 75  WSPLHIAASAGRDEIVKALLGKGA---------QVNAVNQN-----GCTPLHYAASKNRH 120
Query: 684 EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV 743
           E+   LLE GA  D  D+     +  AA  G+  ++ + L  Y+A+ N +  +G T L +
Sbjct: 121 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYKASTNIQDTEGNTPLHL 179

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
           D + RT L  A + G+ ++V  LL  G+ +                +D+ GW+PLH AA 
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 83
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
            G +E+ +ALL  GA+V+ V+ +G  PL  AA    + +  M LE   AN + K H   T
Sbjct: 84  AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEAT 142
Query: 740 AL-RVNMKNVTKLSFWYLLIQPLLNI 764
           A+ R   K   K+    L  +   NI
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNI 168

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
            GA VNA+D  GRT L  +A +GH +IV  +LEY AD+N QD  G+TA  +S
Sbjct: 69  HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           V IL+  GA V+  D  G+TPL +AA  GH ++ E+LL++ AD +  D  GRTPL  AA+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           +GH   V +LL +GA V+  D  G+T   ++   GN D+   L
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           D    D+ G TPLH AA  GH E+   LL+ GA V+  D  GR PL LAA  GH  +VE+
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
            LE Y A+VN +   G+TA  +++ N
Sbjct: 99  LLE-YGADVNAQDKFGKTAFDISIDN 123

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
           S +G+K+  A + G +D VR+L+  GAD    D  G     +AAK GH E V  LLK  A
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 940 D-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           D ++         + +A  GH  ++ +L +Y  D+
Sbjct: 72  DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
            D+  +TAL+ A   G  + V+ LL+ G  +N  D  GW+PL  A+  G   +VK LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA VN  +  G T L  AA     E+ +         +LL  GA+ +A D    TA+  +
Sbjct: 96  GAHVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYDATAMHRA 146
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A  G+  +V  +L Y A  N QD +G T L ++  C       AK    L+ +GA +  E
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA--CDEERVEEAK---FLVTQGASIYIE 201
Query: 554 DREGMTPLLVA 564
           ++E  TPL VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 494 AYMGHAD-IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           AY G  D +   IL   +   + D D RTAL  +      S G+ ++V  LL+ G  V+ 
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 68
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
           +D  G +PL +AA  G  ++ + LL   A  + ++++G TPL  AAS        +LL  
Sbjct: 69  KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
           GA  D  D    T +  AAA+GN+ +V+ LL                S + Q  D  G T
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILL------------FYKASTNIQ--DTEGNT 174
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
           PLH A  E   E  + L+  GA +   + + + PL +A
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
           D + RT L  A + G+ ++V  LL  G+ +                +D+ GW+PLH AA 
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 82
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
            G +E+ +ALL  GA V+ V+ +G  PL  AA    + +  M LE   AN + K H   T
Sbjct: 83  AGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDAT 141
Query: 740 AL-----RVNMKNVTKLSFW 754
           A+     + N+K V  L F+
Sbjct: 142 AMHRAAAKGNLKMVHILLFY 161

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
            GA VNA D  GRT L  +A +GH +IV  +LEY AD+N QD  G+TA  +S
Sbjct: 69  HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           V IL+  GA V+  D  G+TPL +AA  GH ++ E+LL++ AD +  D  GRTPL  AA+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           +GH   V +LL +GA V+  D  G+T   ++   GN D+   L
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           D    D+ G TPLH AA  GH E+   LL+ GA V+  D  GR PL LAA  GH  +VE+
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
            LE Y A+VN +   G+TA  +++ N
Sbjct: 99  LLE-YGADVNAQDKFGKTAFDISIDN 123

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYA 939
           S +G+K+  A + G +D VR+L+  GAD    D  G     +AAK GH E V  LLK  A
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 940 D-DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           D ++         + +A  GH  ++ +L +Y  D+
Sbjct: 72  DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
            D+  +TAL+ A   G  + V+ LL+ G  +N  D  GW+PL  A+  G   +VK LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA VN  +  G T L  AA     E+ +         +LL  GA+ +A D    TA+  +
Sbjct: 96  GAHVNAVNQNGCTPLHYAASKNRHEIAV---------MLLEGGANPDAKDHYDATAMHRA 146
Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A  G+  +V  +L Y A  N QD +G T L ++  C       AK    L+ +GA +  E
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA--CDEERVEEAK---FLVTQGASIYIE 201
Query: 554 DREGMTPLLVA 564
           ++E  TPL VA
Sbjct: 202 NKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 494 AYMGHAD-IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           AY G  D +   IL   +   + D D RTAL  +      S G+ ++V  LL+ G  V+ 
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWAC-----SAGHTEIVEFLLQLGVPVND 68
Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
           +D  G +PL +AA  G  ++ + LL   A  + ++++G TPL  AAS        +LL  
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
           GA  D  D    T +  AAA+GN+ +V+ LL                S + Q  D  G T
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILL------------FYKASTNIQ--DTEGNT 174
Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
           PLH A  E   E  + L+  GA +   + + + PL +A
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
           D + RT L  A + G+ ++V  LL  G+ +                +D+ GW+PLH AA 
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPV--------------NDKDDAGWSPLHIAAS 82
Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
            G +E+ +ALL  GA V+ V+ +G  PL  AA    + +  M LE   AN + K H   T
Sbjct: 83  AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDAT 141
Query: 740 AL-----RVNMKNVTKLSFW 754
           A+     + N+K V  L F+
Sbjct: 142 AMHRAAAKGNLKMVHILLFY 161

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE+         V++LL 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI---------VEVLLK 68
Query: 475 AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
            GA VNA+DS GRT L  +A +GH +IV  +LEY AD+N QD  G+TA  +S
Sbjct: 69  HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           V IL+  GA V+  D  G+TPL +AA  GH ++ E+LL++ AD +  D  GRTPL  AA+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           +GH   V +LL +GA V+  D  G+T   ++   GN D+   L
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
           D+ G TPLH AA  GH E+   LL+ GA V+  D+ GR PL LAA  GH  +VE+ LE Y
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE-Y 102
Query: 727 EANVNQKSHDGRTALRVNMKN 747
            A+VN +   G+TA  +++ N
Sbjct: 103 GADVNAQDKFGKTAFDISIDN 123

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 880 SSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQY 938
            S +G+K+  A + G +D VR+L+  GAD    D  G     +AAK GH E V  LLK  
Sbjct: 11  GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 939 AD--DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
           AD   S+ +     +  +A  GH  ++ +L +Y  D+
Sbjct: 71  ADVNASDSWGRTPLHL-AATVGHLEIVEVLLEYGADV 106

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
Query: 394 VQILLEAGANINHT-DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
           +  LL  GA +N T D  G T L  A+    +   K LL +GAD N  D  GRT L AA 
Sbjct: 33  ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA- 91
Query: 453 WGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDAD 511
                   +    + V ++LL   A ++NA   +G T LI +A +    +V  ++  DAD
Sbjct: 92  --------VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
           IN  DN G+TAL  +A          + V+ILL   A  D +D +  TPL +AA EG  +
Sbjct: 144 INAADNSGKTALHWAAAV-----NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 198
Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
             + LL+N A+++  D   R P   A+   H   V LL
Sbjct: 199 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 468 VVKLLLAAGAHVNAA-DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
           V+  LLA GA +NA  D  G T+L  +A    AD    +L+  AD N QDN GRT L  +
Sbjct: 32  VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
                ++D       +L  +   ++    +G TPL++AA      + E L+  +AD +  
Sbjct: 92  V----AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 147
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
           D SG+T L  AA++ +   V +LL   A  D  D +  T L +AA +G+ +    LLD
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 205

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 499 ADIVSSILEYDADIN-QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
           A ++S +L   A++N   D  G T+L ++A         A     LL+ GA  + +D  G
Sbjct: 30  AQVISDLLAQGAELNATMDKTGETSLHLAARFA-----RADAAKRLLDAGADANSQDNTG 84
Query: 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDK-SGRTPLWAAASMGHASCVALLLFWGAYV 616
            TPL  A       V +ILL N A   +     G TPL  AA +     V  L+   A +
Sbjct: 85  RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI 144
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
           +  D  G+T L  AAA  N + VN LL                + D Q  D+   TPL  
Sbjct: 145 NAADNSGKTALHWAAAVNNTEAVNILL------------MHHANRDAQ--DDKDETPLFL 190
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
           AA EG  E  +ALL+  A  +  D+  R P  +A++  H+ +V +  E
Sbjct: 191 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 69/108 (63%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V++L+A GA VNA D +G T L  +A +GH +IV  +L+Y AD+N +DN G T L ++A+
Sbjct: 30  VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
                 G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 90  -----RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 58/103 (56%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           V IL+  GA V+  D +G+TPL +AA  GH ++ E+LL+  AD +  D  G TPL  AA 
Sbjct: 30  VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
            GH   V +LL  GA V+  D  G+T   ++   GN D+   L
Sbjct: 90  RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 652 LAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
           +A G    +LDE      G TPLH AA  GH E+   LL+ GA V+  DN G  PL LAA
Sbjct: 34  MANGADVNALDED-----GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 712 QDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
             GH  +VE+ L ++ A+VN +   G+TA  +++ N
Sbjct: 89  IRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDN 123

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL   GA++N  D  G TPL  A+  GH  +V++LL++GADVN +   G
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
           RT L  AAW  HLE         +V++LL  GA VNA D  G+TA   S   G+ D+
Sbjct: 81  RTPLHLAAWADHLE---------IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V++L A GA VNA D  G T L  +A +GH +IV  +L+  AD+N   N GRT L ++A 
Sbjct: 30  VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
                  + ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 90  A-----DHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 56/103 (54%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           V IL   GA V+  D  G TPL +AA  GH ++ E+LL+N AD +    +GRTPL  AA 
Sbjct: 30  VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
             H   V +LL  GA V+  D  G+T   ++   GN D+   L
Sbjct: 90  ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           D    D  G TPLH AA+ GH E+   LL+ GA V+   N GR PL LAA   H  +VE+
Sbjct: 39  DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
            L ++ A+VN +   G+TA  +++ N
Sbjct: 99  LL-KHGADVNAQDKFGKTAFDISIDN 123

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D  G TPL  A+  GH  +V++LL++GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
            T L  AA+ GHLE+          ++LL  GA VNA D  G+TA   S   G+ D+
Sbjct: 81  FTPLHLAAFIGHLEIA---------EVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           V IL+  GA V+ +D  G+TPL +A   GH ++ E+LL+N AD + +D  G TPL  AA 
Sbjct: 30  VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           +GH     +LL  GA V+  D  G+T   ++   GN D+   L
Sbjct: 90  IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           D   +D  G TPL+ A   GH E+   LL+ GA V+ VD  G  PL LAA  GH  + E+
Sbjct: 39  DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
            L ++ A+VN +   G+TA  +++ N
Sbjct: 99  LL-KHGADVNAQDKFGKTAFDISIGN 123

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 59/103 (57%)
Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           V IL+  GA V+ ED+ G+TPL +AA   H ++ E+LL+N AD + ID  G TPL   A 
Sbjct: 30  VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 600 MGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
            GH   V +LL  GA V+  D  G+T   ++   GN D+   L
Sbjct: 90  YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           D    D  G TPLH AA+  H E+   LL+ GA V+ +D  G  PL L A  GH  +VE+
Sbjct: 39  DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 722 FLEQYEANVNQKSHDGRTALRVNMKN 747
            L ++ A+VN +   G+TA  +++ N
Sbjct: 99  LL-KHGADVNAQDKFGKTAFDISIDN 123

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVV 427
            L + +  + G + L+VAA  G  D + +LL+ GAN    + +   PL  A   GH  VV
Sbjct: 76  GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR 487
           K LL S A  N  D+ G T L  A  GGH E         +V LLL  GA +NA++++G 
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHE---------LVALLLQHGASINASNNKGN 186
Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
           TAL  +    H  +V  +L + A +   +   RTA+  +
Sbjct: 187 TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 474 AAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
           A+G  VN    +G + L  +A  G AD++  +L++ A+   ++ D    L ++       
Sbjct: 74  ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC-----Q 128
Query: 534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
            G+ +VV  LL+  AK + +D  G TPL+ A   GH ++  +LL++ A  +  +  G T 
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           L  A    H   V LLL  GA V  ++   RT +  A     I
Sbjct: 189 LHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 6/151 (3%)
Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
           +N    DG + L V+AL      G A ++ +LL+ GA     + +   PL +A  +GH  
Sbjct: 79  VNVTSQDGSSPLHVAAL-----HGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA 631
           V + LL++ A  +  D SG TPL  A S GH   VALLL  GA ++  + +G T L  A 
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Query: 632 AQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
            + ++ VV  LL  G  +  L   RQ  ++D
Sbjct: 194 IEKHVFVVELLLLHGASVQVL-NKRQRTAVD 223

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM 647
           + G +PL  AA  G A  + LLL  GA     +A+    L +A  QG+  VV  LLD   
Sbjct: 84  QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD--- 140
Query: 648 ILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
                       +     +D  G TPL YA   GH E+   LL+ GA ++  +N G   L
Sbjct: 141 -----------SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Query: 708 ILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
             A  + H  +VE+ L  + A+V   +   RTA+    +N
Sbjct: 190 HEAVIEKHVFVVELLL-LHGASVQVLNKRQRTAVDCAEQN 228

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D +G TPL  A+   H  +V++LL+ GADVN  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
            T L  AA  GHLE         +V++LL  GA VNA D  G+TA   S   G+ D+
Sbjct: 81  STPLHLAALFGHLE---------IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V++L+A GA VNA D +G T L  +A   H +IV  +L++ AD+N  DNDG T L ++AL
Sbjct: 30  VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
                 G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL
Sbjct: 90  F-----GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 58/104 (55%)
Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
           G    V IL+  GA V+  DR+G TPL +AA   H ++ E+LL++ AD +  D  G TPL
Sbjct: 25  GQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPL 84
Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
             AA  GH   V +LL  GA V+  D  G+T   ++   GN D+
Sbjct: 85  HLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            D  G TPLH AA   H E+   LL+ GA V+  DNDG  PL LAA  GH  +VE+ L +
Sbjct: 43  NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL-K 101
Query: 726 YEANVNQKSHDGRTALRVNMKN 747
           + A+VN +   G+TA  +++ N
Sbjct: 102 HGADVNAQDKFGKTAFDISIDN 123

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
           KN  ++ K+  E +IN    FL++         D + +T L VA   G  +A+  L+E  
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
             +   D EG T L  A       + + LL  G++VN  D  G+T L    W      +I
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL---MW------SI 109
Query: 462 VLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
           + G   +   LL  GA+VN  + EG T LI ++  G ++IV  +LE  ADI+ +D  G T
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLT 169
Query: 522 A 522
           A
Sbjct: 170 A 170

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 405 NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLG 464
           N+ D    TPL  A   G    +  L+++   +   D+ G TAL  A     L +     
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIA---- 84
Query: 465 PLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALS 524
                + LL+ G++VN  D  G+T L+ S   G++++   +LE+ A++N ++ +G T L 
Sbjct: 85  -----EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI 139
Query: 525 VSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           V+     S  G +++V  LLE GA +   D  G+T    A   G ++V +I  E
Sbjct: 140 VA-----SKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 19/179 (10%)
Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
           N +D+  RT L V+ +      G    +  L+E   K++ +D EG T L+ A       +
Sbjct: 29  NYRDSYNRTPLMVACML-----GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGI 83
Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
            E LL   ++ +  D SG+TPL  +   G++     LL  GA V+  + EG T L VA+ 
Sbjct: 84  AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143
Query: 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
            G  ++V +LL+ G               D   RD  G T    A I G +EV +   E
Sbjct: 144 YGRSEIVKKLLELGA--------------DISARDLTGLTAEASARIFGRQEVIKIFTE 188

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 583 QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           +++ D   RTPL  A  +G  + +  L+     ++  D EG T L  A     + +  +L
Sbjct: 28  RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
           L +G               +   +D  G TPL ++ I G+ E+   LLE GA V+  + +
Sbjct: 88  LSKGS--------------NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740
           G  PLI+A++ G   +V+  LE   A+++ +   G TA
Sbjct: 134 GETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTA 170

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
           W+P+  A+  GH   ++ L+  G  VN       + L  A  GGHL           VK+
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS---------CVKI 54
Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
           LL  GA VN   ++  T L  +   G  D V+ +L++ A + Q ++D  + +  +A    
Sbjct: 55  LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAA---- 109
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
              G+ + V+ L+  G  +DH+     TPL +A     R   + LLE+ AD +   K   
Sbjct: 110 -RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQD 167
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
           +PL A A         LL+ +GA     +AEG+  + +   +
Sbjct: 168 SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 19/202 (9%)
Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
           L+ +G  V+    + ++PL  A   GH    +ILL++ A  + +     TPL+ A   G 
Sbjct: 22  LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81
Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
             CV LLL  GA V   +++  + +  AA +G+++ VN L+  G            G++D
Sbjct: 82  WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYG------------GNID 128
Query: 663 EQHRDNCGWTPLHYAAIEGHEEVC-RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
             H+ +   TPL Y A E  +  C + LLE+GA V+Q      +PL   A+     L  +
Sbjct: 129 --HKISHLGTPL-YLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVARTASEELACL 184
Query: 722 FLEQYEANVNQKSHDGRTALRV 743
            ++ + A+   K+ +G+  + +
Sbjct: 185 LMD-FGADTQAKNAEGKRPVEL 205

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
           W+P+H AAI GH+   R L+  G  V+ +  D  +PL  A   GH   V++ L ++ A V
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL-KHGAQV 62
Query: 731 NQKSHDGRTAL 741
           N  + D  T L
Sbjct: 63  NGVTADWHTPL 73

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 554 DREGMTPLLVAAFEG-----HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
           D +G TPL +A  +G     HR +  +  +   + D  +   +TPL  A      S V L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHR-LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN 668
           L+  GA    +D  G+T   +A    +   +  LLD              G+LD + R+ 
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA----------APGTLDLEARNY 114
Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-NDGRAPLILAAQDGHYHLVEMFLEQYE 727
            G T LH A     +E  + LLE GA +D VD   GR+PLI A ++    +V++ L Q+ 
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHG 173
Query: 728 ANVNQKSHDGRTAL 741
           ANVN + + G +AL
Sbjct: 174 ANVNAQMYSGSSAL 187

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 110/259 (42%), Gaps = 55/259 (21%)
Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457
           + AGA++N  DC+  TPL  A       +V  L ++GAD    +   R+AL  AA     
Sbjct: 153 IAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDF 212
Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
              +    L   KL                                       DI + D 
Sbjct: 213 GXXVYX--LNSTKL-------------------------------------KGDIEELDR 233
Query: 518 DGRTALSVSALCVPSSDGYAKVVS--ILLEKGAKVDH--------EDREGMTPLLVAAFE 567
           +G TAL +    V  ++G  +V S  +L+EKGAKVD+        E  +G T L  AA  
Sbjct: 234 NGXTALXI----VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289
Query: 568 GHRDVCEILL-ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTV 626
            +  + + L+ E  +++D  D+ G+TP+  AA  G    V  L+  GA V+ +DA   T 
Sbjct: 290 SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTA 349
Query: 627 LSVAAAQGNIDVVNQLLDR 645
             +A A  + ++V+ + DR
Sbjct: 350 RQLAQANNHHNIVD-IFDR 367

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL-WAAASMGHASC 605
           GA V+  D +  TPL +A     R +   L +  AD    +KS R+ L  AAA+      
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXX 215
Query: 606 VALL--LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQ---LLDRGMILGCLAGGRQTGS 660
           V  L        ++ +D  G T L + A     D V     L+++G  +      R+   
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS- 274
Query: 661 LDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAGAKVDQVDNDGRAPLILAAQDGHYHLV 719
             E+++   G T LHYAA   +  + + L+ E G+  D+ D DG+ P+ LAAQ+G   +V
Sbjct: 275 --EKYK---GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Query: 720 EMFLEQ 725
              ++Q
Sbjct: 330 XYLIQQ 335

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 10/188 (5%)
Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D +N ++LH     N I+L+K ++     +D +L      T L+ A  QG +  V  L++
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            GA+ +  D EG + +  A+  GH+++V  L+  G DV+  D  G T L  AA+  H   
Sbjct: 98  YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH--- 154
Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGR-TALIASAYMGHADIVSSILEYDADINQQDND 518
                 +   +LLL     VN  D   + TAL  +   G+  ++S +LE  A+++ Q+  
Sbjct: 155 -----SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209
Query: 519 GRTALSVS 526
           G +AL ++
Sbjct: 210 GESALDLA 217

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE-GMTPLLV 563
           ++E   D+ Q D +  T L  +A+     +    +V   + KGA VD    +   TPL  
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAI-----NNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82
Query: 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
           A  +GH  +   L++  AD   ID  G + +  AA  GH S VA L+  G  VD +D  G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 624 RTVLSVAAAQG-NIDVVNQLL--DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
            T L  AA +  ++D    LL  +  + LG           D+ H++    T LH+A + 
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLG-----------DKYHKN----TALHWAVLA 187
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEA 728
           G+  V   LLEAGA VD  +  G + L LA Q  +  ++    E  +A
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
           G+T L++A+ +G + +V+ LL+ G++ N  D  GWTPL  A   GH  VV+LLLQ  A V
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
           N +     + L  AA  GH++         +VKLLL+ GA  NA +
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVD---------IVKLLLSYGASRNAVN 106

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 15/109 (13%)
Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           G T+L +A+ +G+I  V  LL             Q GS D   +D+ GWTPLH A   GH
Sbjct: 10  GETLLHIASIKGDIPSVEYLL-------------QNGS-DPNVKDHAGWTPLHEACNHGH 55
Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
            +V   LL+  A V+       +PL  AA++GH  +V++ L  Y A+ N
Sbjct: 56  LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASRN 103

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 16/222 (7%)
Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
           W+P+  A+  GH   ++ L+  G  VN       + L  A  GGHL           VK+
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS---------CVKI 110
Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
           LL  GA VN   ++  T L  +   G  D V+ +L++ A + Q ++D  + +  +A    
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAA---- 165
Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
              G+ + V+ L+  G  +DH+     TPL +A     R   + LLE+ AD +   K   
Sbjct: 166 -RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQD 223
Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
           +PL A           LL+ +GA     +AEG+  + +   +
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 265

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 20/214 (9%)
Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
           TA  VS L      G+   V ILL+ GA+V+    +  TPL  A   G  D   +LL++ 
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148
Query: 581 AD-QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
           A  Q   D +  +P+  AA  GH  CV  L+ +G  +D   +   T L +A        V
Sbjct: 149 ASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206
Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
            +LL+ G  +       Q    D         +PLH       EE+   L++ GA     
Sbjct: 207 KKLLESGADV------NQGKGQD---------SPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
           + +G+ P+ L   +    L ++FLE+  A++ + 
Sbjct: 252 NAEGKRPVELVPPE--SPLAQLFLEREGASLPKP 283

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           INHTD EG+TPL  A+  G  AVV+ LLQ+GAD      G  +AL  A   G+ +     
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD----- 99
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
               +VK+LL  G  VN  D  G T L+ + +  H   V  +LE  AD   + + G  ++
Sbjct: 100 ----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Query: 524 SVS 526
            ++
Sbjct: 156 DLA 158

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G  +LSV  L   ++ G    ++  +E+   ++H D EG TPL+ AA  G   V E LL+
Sbjct: 17  GANSLSVHQL---AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 73
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
           N AD   + K   + L  A S G+   V +LL  G  V+  D  G T L  A    ++  
Sbjct: 74  NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 133
Query: 639 VNQLLDRG 646
           V  LL+ G
Sbjct: 134 VKMLLESG 141

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           +E E   +H D+ G TPL  AA+ G  + V  LL  GA    +     + LS+A ++G  
Sbjct: 39  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
           D+V  LLD G              +D    D  G TPL YA    H +  + LLE+GA  
Sbjct: 99  DIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 144
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
               + G   + LA   G Y  V+  +E +
Sbjct: 145 TIETDSGYNSMDLAVALG-YRSVQQVIESH 173

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
           K G T L+ AA  G  + V+ LL  GA++N    +G TPL  A+  GH+ +VKLLL  GA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 436 DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA 481
           DVN     G T    A   GH E         +VKLL A GA VNA
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHE---------IVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
           +G T L  +A  GHA+ V  +L   AD+N +  DG T L ++A      +G+A++V +LL
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA-----KNGHAEIVKLLL 62
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
            KGA V+   ++G TP  +A   GH ++ ++L    AD
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
           G TPLH AA  GH E  + LL  GA V+    DG  PL LAA++GH  +V++ L +  A+
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-AD 67
Query: 730 VNQKSHDGRTALRVNMKN 747
           VN +S DG T   +  KN
Sbjct: 68  VNARSKDGNTPEHLAKKN 85

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           INHTD EG+TPL  A+  G  AVV+ LLQ+GAD      G  +AL  A   G+ +     
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD----- 81
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
               +VK+LL  G  VN  D  G T L+ + +  H   V  +LE  AD   + + G  ++
Sbjct: 82  ----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 137
Query: 524 SVS 526
            ++
Sbjct: 138 DLA 140

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
           +N  D EG T L+ +A  G   +V  +L+  AD  Q    GR     SAL +  S GY  
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRE----SALSLACSKGYTD 81
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
           +V +LL+ G  V+  D  G TPLL A    H    ++LLE+ AD      SG   +  A 
Sbjct: 82  IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Query: 599 SMGHAS 604
           ++G+ S
Sbjct: 142 ALGYRS 147

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 544 LEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA 603
           +E+   ++H D EG TPL+ AA  G   V E LL+N AD   + K   + L  A S G+ 
Sbjct: 21  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
             V +LL  G  V+  D  G T L  A    ++  V  LL+ G
Sbjct: 81  DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 123

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           +E E   +H D+ G TPL  AA+ G  + V  LL  GA    +     + LS+A ++G  
Sbjct: 21  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
           D+V  LLD G              +D    D  G TPL YA    H +  + LLE+GA  
Sbjct: 81  DIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 126
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
               + G   + LA   G Y  V+  +E +
Sbjct: 127 TIETDSGYNSMDLAVALG-YRSVQQVIESH 155

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           GA++ N TD  G T L  A+    S   K LL++ AD N  D  GRT L AA        
Sbjct: 14  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 65
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
            +      V ++L+   A  ++A   +G T LI +A +    ++  ++   AD+N  D+ 
Sbjct: 66  -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G++AL  +A              +LL+ GA  D ++    TPL +AA EG  +  ++LL+
Sbjct: 125 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           + A++D  D   R P   A    H   V LL
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
            P  +   +    +  N  D  G TAL  +A    +D    +LE  AD N QDN GRT L
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
             +     S+D       ++  +   +D    +G TPL++AA      + E L+ + AD 
Sbjct: 63  HAAV----SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
           + +D  G++ L  AA++ +     +LL  GA  D  +    T L +AA +G+ +    LL
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Query: 644 D 644
           D
Sbjct: 179 D 179

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 20/192 (10%)
Query: 539 VVSILLEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
           V+S  + +GA + ++ DR G T L +AA     D  + LLE  AD +  D  GRTPL AA
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 598 ASMGHASCVALLLFWGAYVDTIDA---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654
            S   A  V  +L      D +DA   +G T L +AA         +L   GM+   +  
Sbjct: 66  VS-ADAQGVFQILIRNRATD-LDARMHDGTTPLILAA---------RLAVEGMLEDLINS 114
Query: 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
                ++D+      G + LH+AA   + +    LL+ GA  D  +N    PL LAA++G
Sbjct: 115 HADVNAVDD-----LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Query: 715 HYHLVEMFLEQY 726
            Y   ++ L+ +
Sbjct: 170 SYETAKVLLDHF 181

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           INHTD EG+TPL  A+  G  AVV+ LLQ+GAD      G  +AL  A   G+ +     
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD----- 83
Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
               +VK+LL  G  VN  D  G T L+ + +  H   V  +LE  AD   + + G  ++
Sbjct: 84  ----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
Query: 524 SVS 526
            ++
Sbjct: 140 DLA 142

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G  +LSV  L   ++ G    ++  +E+   ++H D EG TPL+ AA  G   V E LL+
Sbjct: 1   GANSLSVHQL---AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
           N AD   + K   + L  A S G+   V +LL  G  V+  D  G T L  A    ++  
Sbjct: 58  NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117
Query: 639 VNQLLDRG 646
           V  LL+ G
Sbjct: 118 VKMLLESG 125

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           +E E   +H D+ G TPL  AA+ G  + V  LL  GA    +     + LS+A ++G  
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
           D+V  LLD G              +D    D  G TPL YA    H +  + LLE+GA  
Sbjct: 83  DIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
               + G   + LA   G Y  V+  +E +
Sbjct: 129 TIETDSGYNSMDLAVALG-YRSVQQVIESH 157

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           GA++ N TD  G T L  A+    S   K LL++ AD    D  GRT L AA        
Sbjct: 11  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA-------- 62
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
            +      V ++LL   A  ++A   +G T LI +A +    ++  ++   AD+N  D+ 
Sbjct: 63  -VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G++AL  +A              +LL+ GA  D ++ +  TPL +AA EG  +  ++LL+
Sbjct: 122 GKSALHWAAAVNNVD-----AAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 176
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           + A++D  D   R P   A    H   V LL
Sbjct: 177 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 207

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 539 VVSILLEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
           V+S  + +GA + ++ DR G T L +AA     D  + LLE  AD    D  GRTPL AA
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 598 ASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656
            S        +LL   A  +D    +G T L +AA         +L   GM+   +    
Sbjct: 63  VSADAQGVFQILLRNRATDLDARMHDGTTPLILAA---------RLALEGMLEDLINSHA 113
Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716
              ++D+      G + LH+AA   + +    LL+ GA  D  +N    PL LAA++G Y
Sbjct: 114 DVNAVDD-----LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSY 168
Query: 717 HLVEMFLEQYEANVNQKSHDGR 738
              ++ L+ + AN +   H  R
Sbjct: 169 ETAKVLLDHF-ANRDITDHMDR 189

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           GA++ N TD  G T L  A+    S   K LL++ AD N  D  GRT L AA        
Sbjct: 47  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 98
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
            +      V ++L+   A  ++A   +G T LI +A +    ++  ++   AD+N  D+ 
Sbjct: 99  -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 157
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G++AL  +A              +LL+ GA  D ++    TPL +AA EG  +  ++LL+
Sbjct: 158 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           + A++D  D   R P   A    H   V LL
Sbjct: 213 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 243

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 9/216 (4%)
Query: 434 GADVNCSDMGGRTALR-AAAWGGHLEVTIVL----GPLCVVKLLLAAGAHVNAADSEGRT 488
           G DVN     G T L  A+  GG LE          P  +   +    +  N  D  G T
Sbjct: 1   GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           AL  +A    +D    +LE  AD N QDN GRT L  +     S+D       ++  +  
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV----SADAQGVFQILIRNRAT 116
Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
            +D    +G TPL++AA      + E L+ + AD + +D  G++ L  AA++ +     +
Sbjct: 117 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 176
Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
           LL  GA  D  +    T L +AA +G+ +    LLD
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKV-DHEDREGMTPL 561
           D+N +  DG T L +++              +    V+S  + +GA + +  DR G T L
Sbjct: 3   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 62
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
            +AA     D  + LLE  AD +  D  GRTPL AA S   A  V  +L      D +DA
Sbjct: 63  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD-LDA 120
Query: 622 ---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
              +G T L +AA         +L   GM+   +       ++D+      G + LH+AA
Sbjct: 121 RMHDGTTPLILAA---------RLAVEGMLEDLINSHADVNAVDD-----LGKSALHWAA 166
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
              + +    LL+ GA  D  +N    PL LAA++G Y   ++ L+ +
Sbjct: 167 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 214

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 647 MILGCLAGGRQTGSLDEQ-------------------HRDNCGWTPLHYAAIEGHEEVCR 687
           MI  C  GG +TG+ +E+                     D  G T LH AA     +  +
Sbjct: 16  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 75
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            LLEA A  +  DN GR PL  A       + ++ +     +++ + HDG T L
Sbjct: 76  RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 129

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           GA++ N TD  G T L  A+    S   K LL++ AD N  D  GRT L AA        
Sbjct: 46  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 97
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
            +      V ++L+   A  ++A   +G T LI +A +    ++  ++   AD+N  D+ 
Sbjct: 98  -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G++AL  +A              +LL+ GA  D ++    TPL +AA EG  +  ++LL+
Sbjct: 157 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           + A++D  D   R P   A    H   V LL
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 95/214 (44%), Gaps = 9/214 (4%)
Query: 436 DVNCSDMGGRTALR-AAAWGGHLEVTIVL----GPLCVVKLLLAAGAHVNAADSEGRTAL 490
           DVN     G T L  A+  GG LE          P  +   +    +  N  D  G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
             +A    +D    +LE  AD N QDN GRT L  +     S+D       ++  +   +
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV----SADAQGVFQILIRNRATDL 117
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
           D    +G TPL++AA      + E L+ + AD + +D  G++ L  AA++ +     +LL
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
             GA  D  +    T L +AA +G+ +    LLD
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKV-DHEDREGMTPL 561
           D+N +  DG T L +++              +    V+S  + +GA + +  DR G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
            +AA     D  + LLE  AD +  D  GRTPL AA S   A  V  +L      D +DA
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD-LDA 119
Query: 622 ---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
              +G T L +AA         +L   GM+   +       ++D+      G + LH+AA
Sbjct: 120 RMHDGTTPLILAA---------RLAVEGMLEDLINSHADVNAVDD-----LGKSALHWAA 165
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
              + +    LL+ GA  D  +N    PL LAA++G Y   ++ L+ +
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 647 MILGCLAGGRQTGSLDEQ-------------------HRDNCGWTPLHYAAIEGHEEVCR 687
           MI  C  GG +TG+ +E+                     D  G T LH AA     +  +
Sbjct: 15  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            LLEA A  +  DN GR PL  A       + ++ +     +++ + HDG T L
Sbjct: 75  RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 401 GANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           GA++ N TD  G T L  A+    S   K LL++ AD N  D  GRT L AA        
Sbjct: 46  GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA-------- 97
Query: 460 TIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
            +      V ++L+   A  ++A   +G T LI +A +    ++  ++   AD+N  D+ 
Sbjct: 98  -VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G++AL  +A              +LL+ GA  D ++    TPL +AA EG  +  ++LL+
Sbjct: 157 GKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           + A++D  D   R P   A    H   V LL
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 95/214 (44%), Gaps = 9/214 (4%)
Query: 436 DVNCSDMGGRTALR-AAAWGGHLEVTIVL----GPLCVVKLLLAAGAHVNAADSEGRTAL 490
           DVN     G T L  A+  GG LE          P  +   +    +  N  D  G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
             +A    +D    +LE  AD N QDN GRT L  +     S+D       ++  +   +
Sbjct: 62  HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV----SADAQGVFQILIRNRATDL 117
Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
           D    +G TPL++AA      + E L+ + AD + +D  G++ L  AA++ +     +LL
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
             GA  D  +    T L +AA +G+ +    LLD
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKV-DHEDREGMTPL 561
           D+N +  DG T L +++              +    V+S  + +GA + +  DR G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
            +AA     D  + LLE  AD +  D  GRTPL AA S   A  V  +L      D +DA
Sbjct: 62  HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATD-LDA 119
Query: 622 ---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
              +G T L +AA         +L   GM+   +       ++D+      G + LH+AA
Sbjct: 120 RMHDGTTPLILAA---------RLAVEGMLEDLINSHADVNAVDD-----LGKSALHWAA 165
Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
              + +    LL+ GA  D  +N    PL LAA++G Y   ++ L+ +
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 647 MILGCLAGGRQTGSLDEQ-------------------HRDNCGWTPLHYAAIEGHEEVCR 687
           MI  C  GG +TG+ +E+                     D  G T LH AA     +  +
Sbjct: 15  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAK 74
Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            LLEA A  +  DN GR PL  A       + ++ +     +++ + HDG T L
Sbjct: 75  RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           VD  G T LN+A H   ++  + L++ GA+IN  +    +P   A   G + ++  +L+ 
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 434 GA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALI 491
              D+N  +  G  AL  AA  GH++          VKLLL  G   ++  +  G TALI
Sbjct: 95  ATPDLNKHNRYGGNALIPAAEKGHID---------NVKLLLEDGREDIDFQNDFGYTALI 145
Query: 492 ASAYMG-----HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
            +  +      + DIV  ++E  AD + +DN GRTA+  +     +  GY ++  IL +
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA-----NQKGYTEISKILAQ 199

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
           KV  IL +   +VD  D EG TPL +A      ++ + L++  AD +  +    +P   A
Sbjct: 20  KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 598 ASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656
            + G    +A +L      ++  +  G   L  AA +G+ID V  LL+          GR
Sbjct: 80  GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE---------DGR 130
Query: 657 QTGSLDEQHRDNCGWTPLHYAA--IEG---HEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
           +    D   +++ G+T L  A    EG   ++++ + L+E GA     DN GR  +  A 
Sbjct: 131 E----DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186
Query: 712 QDGHYHLVEMFLEQY 726
           Q G Y  +   L QY
Sbjct: 187 QKG-YTEISKILAQY 200

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA    TD  G +PL  A+  GH +  ++LL++G   +      
Sbjct: 9   AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS 504
           RT L  AA  GH  +         V++LL  GA VNA D    TAL  +    H ++V  
Sbjct: 68  RTPLHMAASEGHANI---------VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 505 ILEYDADINQQDNDGRTALSVS 526
           +++Y AD++ Q    +TA  +S
Sbjct: 119 LIKYGADVHTQSKFCKTAFDIS 140

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%)
Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
           L  S L + +  G+     +LL  G   D   +   TPL +AA EGH ++ E+LL++ AD
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 583 QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
            +  D    T L  A    H   V LL+ +GA V T     +T   ++   GN D+   L
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N A     D  G +PL  AA  GH S   +LL  G   D   
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
              RT L +AA++G+ ++V  LL  G               D   +D    T LH+A   
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGA--------------DVNAKDMLKMTALHWATEH 110
Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
            H+EV   L++ GA V       +    ++  +G+  L E+ 
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L +AA+ G    +  LL     V+  +  GRT L V    GN ++  +LL RG       
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   +   +D  G+  +H AA  G  +  + LLE  A V+  DN+G  PL LAA++
Sbjct: 62  --------NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
           GH  +VE  ++   +NV  ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
           VN  D  G T LI ++  G  + V  +LE+ AD +    +  +ALS++     S+ GY  
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA-----STGGYTD 83
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
           +V +LLE+   ++  D  G TPLL A    H    E LL   AD      SG TP+  A 
Sbjct: 84  IVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 599 SMGH 602
           ++G+
Sbjct: 144 ALGY 147

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
           D+ G TPL  A++ G    V  LL WGA    +  E  + LS+A+  G  D+V  LL+R 
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER- 91
Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
                         +D    D  G TPL YA    H +   ALL  GA +    + G  P
Sbjct: 92  -------------DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 707 LILAAQDGHYHLVEMFLEQY 726
           + LA   G Y  V+  +E +
Sbjct: 139 MDLAVALG-YRKVQQVIENH 157

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L +AA+ G    +  LL     V+  +  GRT L V    GN ++  +LL RG       
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   +   +D  G+  +H AA  G  +  + LLE  A V+  DN+G  PL LAA++
Sbjct: 62  --------NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
           GH  +VE  ++   +NV  ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
           VN  D  G T LI ++  G  + V  +LE+ AD +    +  +ALS++     S+ GY  
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA-----STGGYTD 83
Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
           +V +LLE+   ++  D  G TPLL A    H    E LL   AD      SG TP+  A 
Sbjct: 84  IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 599 SMGH 602
           ++G+
Sbjct: 144 ALGY 147

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
           D+ G TPL  A++ G    V  LL WGA    +  E  + LS+A+  G  D+V  LL+R 
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER- 91
Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
                         +D    D  G TPL YA    H +   ALL  GA +    + G  P
Sbjct: 92  -------------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 707 LILAAQDGHYHLVEMFLEQY 726
           + LA   G Y  V+  +E +
Sbjct: 139 MDLAVALG-YRKVQQVIENH 157

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L +AA+ G    +  LL     V+  +  GRT L V    GN ++  +LL RG       
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   +   +D  G+  +H AA  G  +  + LLE  A V+  DN+G  PL LAA++
Sbjct: 62  --------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
           GH  +VE  ++   +NV  ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L +AA+ G    +  LL     V+  +  GRT L V    GN ++  +LL RG       
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   +   +D  G+  +H AA  G  +  + LLE  A V+  DN+G  PL LAA++
Sbjct: 62  --------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
           GH  +VE  ++   +NV  ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++N  D +G+TPL  A+  GH  +V++LL++GADVN  D  G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 445 RTALRAAAWGGHLEVTIVL 463
           +TA   +   G+ ++  +L
Sbjct: 69  KTAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADVN  D  G T L  AA  GHLE         +V++LL 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLE---------IVEVLLK 56
Query: 475 AGAHVNAADSEGRTALIASAYMGHADI 501
           AGA VNA D  G+TA   S   G+ D+
Sbjct: 57  AGADVNAQDKFGKTAFDISIDNGNEDL 83

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
           V++L+A GA VNA D +G T L  +A  GH +IV  +L+  AD+N QD  G+TA  +S
Sbjct: 18  VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 42/82 (51%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD +  DK G TPL  AA  GH   V +LL  GA V+  D
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 621 AEGRTVLSVAAAQGNIDVVNQL 642
             G+T   ++   GN D+   L
Sbjct: 66  KFGKTAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
           AA  G ++  R L+  GA V+  D DG  PL LAA++GH  +VE+ L+   A+VN +   
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKF 67
Query: 737 GRTALRVNMKN 747
           G+TA  +++ N
Sbjct: 68  GKTAFDISIDN 78

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 594 LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA 653
           L +AA+ G    +  LL     V+  +  GRT L V    GN ++  +LL RG       
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------ 61
Query: 654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQD 713
                   +   +D  G   +H AA  G  +  + LLE  A V+  DN+G  PL LAA++
Sbjct: 62  --------NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 714 GHYHLVEMFLEQYEANVNQKSHDGRTA 740
           GH  +VE  ++   +NV  ++H G TA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTA 140

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
           QT L++A      +  + LL AG +    D  G TPL  A   G  A V +L QS     
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS----- 100
Query: 439 CSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADS-EGRTALIASAY 495
           C+     + L+A  + GH  L +  + G L +V+LL++ GA VNA +   GRTAL  +  
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160
Query: 496 MGHADIVSSILEYDADINQ 514
           + + D+VS +L+  AD+N+
Sbjct: 161 LQNPDLVSLLLKCGADVNR 179

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++   D  G TPL  A+  GH  VVKLLL++GADVN  D  G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 445 RTALRAAAWGGHLEVTIVL 463
           +TA   +   G+ ++  +L
Sbjct: 73  KTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADV   D  G T L  AA  GHLE         VVKLLL 
Sbjct: 10  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---------VVKLLLE 60
Query: 475 AGAHVNAADSEGRTALIASAYMGHADI 501
           AGA VNA D  G+TA   S   G+ D+
Sbjct: 61  AGADVNAQDKFGKTAFDISIDNGNEDL 87

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 42/82 (51%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD    DK+G TPL  AA  GH   V LLL  GA V+  D
Sbjct: 10  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 621 AEGRTVLSVAAAQGNIDVVNQL 642
             G+T   ++   GN D+   L
Sbjct: 70  KFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
           AA  G ++  R L+  GA V   D +G  PL LAA++GH  +V++ LE   A+VN +   
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKF 71
Query: 737 GRTALRVNMKN 747
           G+TA  +++ N
Sbjct: 72  GKTAFDISIDN 82

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 881 SKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
           S +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA++GH  V++LL +   
Sbjct: 4   SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 941 D 941
           D
Sbjct: 64  D 64

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV---DHEDREGMTPLLVAAFEGHR 570
           Q+D DGR  L  S      S    ++ S LL K   V   D+ D  G TP  +A   G+ 
Sbjct: 31  QKDQDGRIPLHWSV-----SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 571 DVCEILLEN--EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
           +V + L +   + D + I   G T L  A           L+  GA V   D   +  L 
Sbjct: 86  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
            AA+ G++ ++  L        C  G       D+Q     GWTPL +A  EGH +    
Sbjct: 146 RAASVGSLKLIELL--------CGLGKSAVNWQDKQ-----GWTPLFHALAEGHGDAAVL 192
Query: 689 LLEA-GAKVDQVDNDG 703
           L+E  GA+ D VDN G
Sbjct: 193 LVEKYGAEYDLVDNKG 208

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 587 DKSGRTPL-WAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGNIDVVNQL 642
           D+ GR PL W+ +   H    + LL     V   D  D  G T   +A + GN++VV  L
Sbjct: 33  DQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
            DR +              D     N G T LH A  +   EV + L+E GA V   D  
Sbjct: 92  YDRPL------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            + PL  AA  G   L+E+     ++ VN +   G T L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV---DHEDREGMTPLLVAAFEGHR 570
           Q+D DGR  L  S      S    ++ S LL K   V   D+ D  G TP  +A   G+ 
Sbjct: 31  QKDQDGRIPLHWSV-----SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 571 DVCEILLEN--EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
           +V + L +   + D + I   G T L  A           L+  GA V   D   +  L 
Sbjct: 86  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
            AA+ G++ ++  L        C  G       D+Q     GWTPL +A  EGH +    
Sbjct: 146 RAASVGSLKLIELL--------CGLGKSAVNWQDKQ-----GWTPLFHALAEGHGDAAVL 192
Query: 689 LLEA-GAKVDQVDNDG 703
           L+E  GA+ D VDN G
Sbjct: 193 LVEKYGAEYDLVDNKG 208

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 587 DKSGRTPL-WAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGNIDVVNQL 642
           D+ GR PL W+ +   H    + LL     V   D  D  G T   +A + GN++VV  L
Sbjct: 33  DQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
            DR +              D     N G T LH A  +   EV + L+E GA V   D  
Sbjct: 92  YDRPL------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            + PL  AA  G   L+E+     ++ VN +   G T L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
Query: 379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
           QT L++A      +  + LL AG +    D  G TPL  A   G  A V +L QS     
Sbjct: 43  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS----- 97
Query: 439 CSDMGGRTALRAAAWGGH--LEVTIVLGPLCVVKLLLAAGAHVNAADS-EGRTALIASAY 495
           C+     + L+A  + GH  L +  + G L +V+LL++ GA VNA +   GRTAL  +  
Sbjct: 98  CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 157
Query: 496 MGHADIVSSILEYDADINQQDNDGRTALSVS 526
           + + D+VS +L+  AD+N+    G +   ++
Sbjct: 158 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 188

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV---DHEDREGMTPLLVAAFEGHR 570
           Q+D DGR  L  S      S    ++ S LL K   V   D+ D  G TP  +A   G+ 
Sbjct: 31  QKDQDGRIPLHWSV-----SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 571 DVCEILLEN--EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
           +V + L +   + D + I   G T L  A           L+  GA V   D   +  L 
Sbjct: 86  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
            AA+ G++ ++  L        C  G       D+Q     GWTPL +A  EGH +    
Sbjct: 146 RAASVGSLKLIELL--------CGLGKSAVNWQDKQ-----GWTPLFHALAEGHGDAAVL 192
Query: 689 LLEA-GAKVDQVDNDG 703
           L+E  GA+ D VDN G
Sbjct: 193 LVEKYGAEYDLVDNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 587 DKSGRTPL-WAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGNIDVVNQL 642
           D+ GR PL W+ +   H    + LL     V   D  D  G T   +A + GN++VV  L
Sbjct: 33  DQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 643 LDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
            DR +              D     N G T LH A  +   EV + L+E GA V   D  
Sbjct: 92  YDRPL------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 139
Query: 703 GRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            + PL  AA  G   L+E+     ++ VN +   G T L
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYA 537
           VN ADS G TAL  S    +  +V  +L+     +++Q+  G + + ++AL    +    
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
           + V  L   G       + G T L++A   G  DV + LL  EAD +  D  G T L  A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Query: 598 ASMGHASCVALLL-FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
              GH     LLL      +   D +G T L VA   G  ++ + L  R
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG--------------MILGCLAGGRQTGSL 661
           V+  D+ G T L  + +  N  VV QLLD G              ++L  LA  +    +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 662 D-----------EQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
           +                  G T L  A   G  +V +ALL   A V+  D+DG   L+ A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Query: 711 AQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNM 745
            + GH  +  + L     +++    DG TAL V +
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL 258

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
           D+NQ D+ G      S L     +G + VV +L+ +GA+++  +R   TPL +AA  GHR
Sbjct: 31  DLNQGDDHG-----FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR 85
Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
           D+ + LL+ +AD + +++ G  PL  A   G       L+  GA V   +  G   +  A
Sbjct: 86  DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Query: 631 AA 632
            A
Sbjct: 146 KA 147

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 556 EGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
           E M  +     EG+     + L+N E D +  D  G +PL  A   G ++ V +L+  GA
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
            ++ ++    T L +AA+ G+ D+V +LL     +  +           +H    G  PL
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV----------NEH----GNVPL 109
Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
           HYA   G ++V   L+  GA V   +  G  P+
Sbjct: 110 HYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
           D+ G++PLH+A  EG   V   L+  GA+++ ++     PL LAA  GH  +V+  L QY
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QY 94
Query: 727 EANVNQKSHDGRTAL 741
           +A++N  +  G   L
Sbjct: 95  KADINAVNEHGNVPL 109

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 544 LEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
           L  GA V+  +  ++  TPL+ A        CE LL+N A+ +  D +GR PL  A  +G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 602 HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           H     L L  GA +   D+EGR  L++A    N D+V  L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
           D+NQ D+ G      S L     +G + VV +L+ +GA+++  +R   TPL +AA  GHR
Sbjct: 26  DLNQGDDHG-----FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR 80
Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
           D+ + LL+ +AD + +++ G  PL  A   G       L+  GA V   +  G   +  A
Sbjct: 81  DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Query: 631 AA 632
            A
Sbjct: 141 KA 142

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 558 MTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
           M  +     EG+     + L+N E D +  D  G +PL  A   G ++ V +L+  GA +
Sbjct: 1   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
           + ++    T L +AA+ G+ D+V +LL     +  +           +H    G  PLHY
Sbjct: 61  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV----------NEH----GNVPLHY 106
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPL 707
           A   G ++V   L+  GA V   +  G  P+
Sbjct: 107 ACFWGQDQVAEDLVANGALVSICNKYGEMPV 137

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY 726
           D+ G++PLH+A  EG   V   L+  GA+++ ++     PL LAA  GH  +V+  L QY
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QY 89
Query: 727 EANVNQKSHDGRTAL 741
           +A++N  +  G   L
Sbjct: 90  KADINAVNEHGNVPL 104

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 544 LEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
           L  GA V+  +  ++  TPL+ A        CE LL+N A+ +  D +GR PL  A  +G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 602 HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           H     L L  GA +   D+EGR  L++A    N D+V  L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 544 LEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
           L  GA V+  +  ++  TPL+ A        CE LL+N A+ +  D +GR PL  A  +G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 602 HASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           H     L L  GA +   D+EGR  L++A    N D+V  L
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
           AA  G  D V+IL+  GA++   D  G TPL  A+  GH  VVKLLL++GADV   D  G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 445 RTALRAAAWGGHLEVTIVL 463
           +TA   +   G+ ++  +L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+  G    V++L+ +GADV   D  G T L  AA  GHLE         VVKLLL 
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---------VVKLLLE 78
Query: 475 AGAHVNAADSEGRTALIASAYMGHADI 501
           AGA V A D  G+TA   S   G+ D+
Sbjct: 79  AGADVXAQDKFGKTAFDISIDNGNEDL 105

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 41/82 (50%)
Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           LL AA  G  D   IL+ N AD    DK+G TPL  AA  GH   V LLL  GA V   D
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 621 AEGRTVLSVAAAQGNIDVVNQL 642
             G+T   ++   GN D+   L
Sbjct: 88  KFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
           AA  G ++  R L+  GA V   D +G  PL LAA++GH  +V++ LE   A+V  +   
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKF 89
Query: 737 GRTALRVNMKN 747
           G+TA  +++ N
Sbjct: 90  GKTAFDISIDN 100

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 870 RDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHE 929
           R +HM      S +G+K+  AA+ G +D VR+L+  GAD    D  G     +AA++GH 
Sbjct: 16  RGSHM-----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL 70
Query: 930 TVLRLLKQYADD 941
            V++LL +   D
Sbjct: 71  EVVKLLLEAGAD 82

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
           L  AA +G V+ V+ LLEAGAN N  +  G  P++    G  + V +LLL  GA+ NC+D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCAD 74
Query: 442 MGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
               T  +  AA  G L+  +VL           AGA ++  D+ GR  +  +  +GH D
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLH---------RAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 501 I 501
           +
Sbjct: 126 V 126

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V+ LL AGA+ NA +S GR   I    MG A +   +L + A+ N  D    T     A 
Sbjct: 28  VRALLEAGANPNAPNSYGRRP-IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDA- 85
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
              + +G+   + +L   GA++D  D  G  P+ +A   GHRDV   L
Sbjct: 86  ---AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 359 LKTFLKSCEALDLELVDKHGQ--TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416
           ++T  K C    +   D  G+  T L+ AA    V  V+ LL+ GA+++  D  G  PL 
Sbjct: 21  VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 80
Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
           +A   GH  V +LL++ GA VN +D+   T L  AA  G  E         + KLLL  G
Sbjct: 81  NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE---------ICKLLLQHG 131
Query: 477 AHVNAADSEGRTAL 490
           A     + +G T L
Sbjct: 132 ADPTKKNRDGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 587 DKSGR--TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
           D  GR  TPL  AA     S V  LL  GA V   D  G   L  A + G+ +V   L+ 
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
            G ++                 D   +TPLH AA +G  E+C+ LL+ GA   + + DG 
Sbjct: 97  HGAVVNVA--------------DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
Query: 705 APLILAAQDGHYHLVEMF 722
            PL L  +DG   + ++ 
Sbjct: 143 TPLDL-VKDGDTDIQDLL 159

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 359 LKTFLKSCEALDLELVDKHGQ--TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416
           ++T  K C    +   D  G+  T L+ AA    V  V+ LL+ GA+++  D  G  PL 
Sbjct: 25  VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 84
Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
           +A   GH  V +LL++ GA VN +D+   T L  AA  G  E         + KLLL  G
Sbjct: 85  NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE---------ICKLLLQHG 135
Query: 477 AHVNAADSEGRTAL 490
           A     + +G T L
Sbjct: 136 ADPTKKNRDGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 587 DKSGR--TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
           D  GR  TPL  AA     S V  LL  GA V   D  G   L  A + G+ +V   L+ 
Sbjct: 41  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
            G ++                 D   +TPLH AA +G  E+C+ LL+ GA   + + DG 
Sbjct: 101 HGAVVNVA--------------DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 146
Query: 705 APLILAAQDGHYHLVEMF 722
            PL L  +DG   + ++ 
Sbjct: 147 TPLDL-VKDGDTDIQDLL 163

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 359 LKTFLKSCEALDLELVDKHGQ--TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR 416
           ++T  K C    +   D  G+  T L+ AA    V  V+ LL+ GA+++  D  G  PL 
Sbjct: 23  VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 82
Query: 417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG 476
           +A   GH  V +LL++ GA VN +D+   T L  AA  G  E         + KLLL  G
Sbjct: 83  NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE---------ICKLLLQHG 133
Query: 477 AHVNAADSEGRTAL 490
           A     + +G T L
Sbjct: 134 ADPTKKNRDGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 587 DKSGR--TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
           D  GR  TPL  AA     S V  LL  GA V   D  G   L  A + G+ +V   L+ 
Sbjct: 39  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
            G ++                 D   +TPLH AA +G  E+C+ LL+ GA   + + DG 
Sbjct: 99  HGAVVNVA--------------DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
Query: 705 APLILAAQDGHYHLVEMF 722
            PL L  +DG   + ++ 
Sbjct: 145 TPLDL-VKDGDTDIQDLL 161

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSA 425
           E  D++ VD++G+TAL   A  G    V++L EAGA+++H D   G T L  A+      
Sbjct: 66  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAA 451
           VV+ L++ GAD+   D  G TAL  A
Sbjct: 126 VVEALVELGADIEVEDERGLTALELA 151

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 481 AAD--SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
           AAD  SE  T    +A       +S +LE D D++  D +GRTAL   A       G  K
Sbjct: 38  AADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA-----GLGSDK 91
Query: 539 VVSILLEKGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
            V +L E GA +DH D R G+T L +AA     +V E L+E  AD +  D+ G T L
Sbjct: 92  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
           VPSS   A VVS              E  TP   AA +        LLE+  D D +D++
Sbjct: 32  VPSSYIAADVVS--------------EYETPWWTAARKADEQALSQLLEDR-DVDAVDEN 76
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVAAAQGNIDVVNQLLDRG 646
           GRT L   A +G   CV LL   GA +D  D   G T L +AA     +VV  L++ G
Sbjct: 77  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSA 425
           E  D++ VD++G+TAL   A  G    V++L EAGA+++H D   G T L  A+      
Sbjct: 65  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124
Query: 426 VVKLLLQSGADVNCSDMGGRTALRAA 451
           VV+ L++ GAD+   D  G TAL  A
Sbjct: 125 VVEALVELGADIEVEDERGLTALELA 150

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 481 AAD--SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
           AAD  SE  T    +A       +S +LE D D++  D +GRTAL   A       G  K
Sbjct: 37  AADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA-----GLGSDK 90
Query: 539 VVSILLEKGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
            V +L E GA +DH D R G+T L +AA     +V E L+E  AD +  D+ G T L
Sbjct: 91  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
           VPSS   A VVS              E  TP   AA +        LLE+  D D +D++
Sbjct: 31  VPSSYIAADVVS--------------EYETPWWTAARKADEQALSQLLEDR-DVDAVDEN 75
Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVAAAQGNIDVVNQLLDRG 646
           GRT L   A +G   CV LL   GA +D  D   G T L +AA     +VV  L++ G
Sbjct: 76  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 41/73 (56%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
           G+  L+ AA  G ++ ++ LL  GA+IN  D    TPL SA + GH + VKLLL  GAD 
Sbjct: 35  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 438 NCSDMGGRTALRA 450
                 G TAL A
Sbjct: 95  TVKGPDGLTALEA 107

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
           VK  +  G DVN +  GGR  L  AA  G LE+         ++ LL  GA +NA D   
Sbjct: 18  VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI---------LEFLLLKGADINAPDKHH 68
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
            T L+++ Y GH   V  +L   AD   +  DG TAL  +
Sbjct: 69  ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
           G  D V   +    D+N+    GR  L  +A C     G  +++  LL KGA ++  D+ 
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-----GQLEILEFLLLKGADINAPDKH 67
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
            +TPLL A +EGH    ++LL   AD+      G T L A
Sbjct: 68  HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEA 107

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 40/88 (45%)
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
           KG  V+     G  PL  AA  G  ++ E LL   AD +  DK   TPL +A   GH SC
Sbjct: 24  KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 83
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
           V LLL  GA       +G T L     Q
Sbjct: 84  VKLLLSKGADKTVKGPDGLTALEATDNQ 111

>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20 Structures Length = 156

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
           L  AA +G V+ V+ LLEAGA  N  +  G  P++    G  + V +LLL  GA+ NC+D
Sbjct: 16  LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCAD 74
Query: 442 MGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
               T  +  AA  G L+  +VL           AGA ++  D+ GR  +  +  +GH D
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLH---------RAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 501 I 501
           +
Sbjct: 126 V 126

>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20 Structures Length = 156

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V+ LL AGA  NA +S GR   I    MG A +   +L + A+ N  D    T     A 
Sbjct: 28  VRALLEAGALPNAPNSYGRRP-IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDA- 85
Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
              + +G+   + +L   GA++D  D  G  P+ +A   GHRDV   L
Sbjct: 86  ---AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
           E  D  L +  G TAL+ A   G  + V+ L++ G N+N  D +GWTPL  A+   +  V
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 427 VKLLLQSGADV 437
            K L++SGA V
Sbjct: 119 CKFLVESGAAV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ S+  G  D+V  I+    D +  +++G TAL  +A+C     G+ ++V  L++ G  
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH-NAVCA----GHTEIVKFLVQFGVN 95
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581
           V+  D +G TPL  AA   +  VC+ L+E+ A
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
           E  D  L +  G TAL+ A   G  + V+ L++ G N+N  D +GWTPL  A+   +  V
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 427 VKLLLQSGADV 437
            K L++SGA V
Sbjct: 119 CKFLVESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L+ S+  G  D+V  I+    D +  +++G TAL  +A+C     G+ ++V  L++ G  
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH-NAVCA----GHTEIVKFLVQFGVN 95
Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581
           V+  D +G TPL  AA   +  VC+ L+E+ A
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 381 ALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCS 440
            L  AA +G V+ V+ LLEAGA+ N  +  G  P++    G  + V +LLL  GA+ NC+
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPNCA 73
Query: 441 DMGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
           D    T  +  AA  G L+  +VL           AGA ++  D+ GR  +  +   GH 
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLH---------RAGARLDVCDAWGRLPVDLAEEQGHR 124
Query: 500 DI 501
           DI
Sbjct: 125 DI 126

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 474 AAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
           + G H+    S+    L  +A  G  + V  +LE  AD N  +  GR  + V  +     
Sbjct: 2   SPGIHMLGGSSDA--GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM----- 54
Query: 534 DGYAKVVSILLEKGAKVDHEDREGMT-PLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
            G A+V  +LL  GA+ +  D   +T P+  AA EG  D   +L    A  D  D  GR 
Sbjct: 55  -GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Query: 593 PLWAAASMGH 602
           P+  A   GH
Sbjct: 114 PVDLAEEQGH 123

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRGM------------ILGCLAGGRQTGSLDEQH--RDNCG-- 670
           L+ AAA+G ++ V QLL+ G             I   + G  Q   L   H    NC   
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADP 75
Query: 671 ---WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
                P+H AA EG  +    L  AGA++D  D  GR P+ LA + GH
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
           H +A +  G+TAL    + G   +   +L+  A  N QD  G + +  +A       G+ 
Sbjct: 34  HPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAART-----GFL 87
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
             + +L+E GA V+  D  G  P+ +A  EGH  V    L  E+D  H D SG TPL  A
Sbjct: 88  DTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPLELA 146
Query: 598 ASMGHASCVALL 609
              G  + + +L
Sbjct: 147 RQRGAQNLMDIL 158

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
           H +A +  G+TAL    + G   +   +L+  A  N QD  G + +  +A       G+ 
Sbjct: 36  HPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAART-----GFL 89
Query: 538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA 597
             + +L+E GA V+  D  G  P+ +A  EGH  V    L  E+D  H D SG TPL  A
Sbjct: 90  DTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGLTPLELA 148
Query: 598 ASMGHASCVALL 609
              G  + + +L
Sbjct: 149 RQRGAQNLMDIL 160

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 40/73 (54%)
Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
           G+  L+ AA  G ++ ++ LL  GA+IN  D    TPL SA + GH + VKLLL  GAD 
Sbjct: 40  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 438 NCSDMGGRTALRA 450
                 G TA  A
Sbjct: 100 TVKGPDGLTAFEA 112

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
           VK  +  G DVN +  GGR  L  AA  G LE+         ++ LL  GA +NA D   
Sbjct: 23  VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI---------LEFLLLKGADINAPDKHH 73
Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
            T L+++ Y GH   V  +L   AD   +  DG TA   +
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
           G  D V   +    D+N+    GR  L  +A C     G  +++  LL KGA ++  D+ 
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-----GQLEILEFLLLKGADINAPDKH 72
Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
            +TPLL A +EGH    ++LL   AD+      G T   A
Sbjct: 73  HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 39/88 (44%)
Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
           KG  V+     G  PL  AA  G  ++ E LL   AD +  DK   TPL +A   GH SC
Sbjct: 29  KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQ 633
           V LLL  GA       +G T       Q
Sbjct: 89  VKLLLSKGADKTVKGPDGLTAFEATDNQ 116

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
           E +  + +++ G+TAL V        A++ LL+ GA+ N  D  G +P+  A+  G    
Sbjct: 25  ELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGFLDT 83
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
           +K+L++ GADVN  D  G   +  A   GH  V             LAA + ++  D+ G
Sbjct: 84  LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS----------FLAAESDLHRRDARG 133
Query: 487 RTALIASAYMGHADIV 502
            T L  +   G  D+V
Sbjct: 134 LTPLELALQRGAQDLV 149

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRG-----------------MILGCLAGG----RQTGSLDEQH 665
           LS AAA+G++  V +LL R                  M+ G  A      +Q  S + Q 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 64
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            D  G +P+H AA  G  +  + L+E GA V+  D  G  P+ LA Q+GH  +V      
Sbjct: 65  -DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 122
Query: 726 YEANVNQKSHDGRTALRVNMK 746
            E++++++   G T L + ++
Sbjct: 123 -ESDLHRRDARGLTPLELALQ 142

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 367 EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAV 426
           E +  + +++ G+TAL V        A++ LL+ GA+ N  D  G +P+  A+  G    
Sbjct: 31  ELVHPDALNRFGKTALQVMMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGFLDT 89
Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG 486
           +K+L++ GADVN  D  G   +  A   GH  V             LAA + ++  D+ G
Sbjct: 90  LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS----------FLAAESDLHRRDARG 139
Query: 487 RTALIASAYMGHADIV 502
            T L  +   G  D+V
Sbjct: 140 LTPLELALQRGAQDLV 155

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 627 LSVAAAQGNIDVVNQLLDRG-----------------MILGCLAGG----RQTGSLDEQH 665
           LS AAA+G++  V +LL R                  M+ G  A      +Q  S + Q 
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 70
Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            D  G +P+H AA  G  +  + L+E GA V+  D  G  P+ LA Q+GH  +V      
Sbjct: 71  -DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 128
Query: 726 YEANVNQKSHDGRTALRVNMK 746
            E++++++   G T L + ++
Sbjct: 129 -ESDLHRRDARGLTPLELALQ 148

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKS-GRTPLWAAASMGHASCVALLLFWGAYVD 617
           +PLL+AA E        LL+ E  + H   + G T L  AA   +    A++L   A   
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEA-AMVLMEAAPEL 63
Query: 618 TIDA------EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC-- 669
             +       EG+T L +A    N+++V  LL RG         R TGS+      N   
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARG----ASVSARATGSVFHYRPHNLIY 119
Query: 670 -GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPL-ILAAQDGHYHLVEMF 722
            G  PL +AA  G EE+ R L+E GA +   D+ G   L IL  Q       +M+
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVV 427
           L LE  +  G T L+VA      + V++L +AGA++N  +   G TPL  A     ++V+
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 428 KLLLQSGADVNCSDMGGRTALRAA 451
           +LLL++GAD      GGRT L +A
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSA 232

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVV 427
           L LE  +  G T L+VA      + V++L +AGA++N  +   G TPL  A     ++V+
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 428 KLLLQSGADVNCSDMGGRTALRAA 451
           +LLL++GAD      GGRT L +A
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSA 232

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
           +G T LI +A +    ++  ++   AD+N  D+ G++AL  +A              +LL
Sbjct: 14  DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-----NVDAAVVLL 68
Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
           + GA  D ++ +  TPL +AA EG  +  ++LL++ A++D  D   R P   A    H  
Sbjct: 69  KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 128
Query: 605 CVALL 609
            V LL
Sbjct: 129 IVRLL 133

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL-EAGANIN 405
           LH+     N++ L+  L +   + +  +DK G TAL  A H G  D V+ L  +    +N
Sbjct: 77  LHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA 451
             +  G T L +A+W G++ +V+LLL  GA  +  ++  + A   A
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	978
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-124
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-122
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-120
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-111
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-89
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-108
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-85
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-73
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-91
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-86
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-73
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-64
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-85
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-75
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-75
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-60
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-58
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-84
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-76
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-76
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-63
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-83
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-63
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-82
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-75
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-72
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-54
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-76
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-70
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-68
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-63
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-75
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-73
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-71
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-51
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-75
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-74
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-54
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-69
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-68
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-67
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-60
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-56
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-67
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-52
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-45
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-36
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-66
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-63
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-60
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-60
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-65
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-60
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-58
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-64
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-59
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-56
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-55
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-51
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-62
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-61
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-56
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-55
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-54
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-51
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-32
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-61
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-58
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-53
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-53
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-51
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-41
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-61
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-55
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-55
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-55
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-60
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-56
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-55
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-59
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-57
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-50
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-47
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-45
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-59
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-52
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-43
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-43
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-56
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-50
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-50
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-49
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-56
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-46
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-45
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-44
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-55
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-47
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-46
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-45
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-42
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-53
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-52
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-50
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-48
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-44
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-52
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-49
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-43
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-43
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-39
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-52
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-50
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-43
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-42
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-41
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-51
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-49
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-48
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-39
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-49
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-48
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-44
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-44
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-37
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-49
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-46
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-42
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-40
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-40
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-49
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-42
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-30
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-49
2rfa_A	232	Transient receptor potential cation channel subfa	3e-45
2rfa_A	232	Transient receptor potential cation channel subfa	5e-44
2rfa_A	232	Transient receptor potential cation channel subfa	7e-40
2rfa_A	232	Transient receptor potential cation channel subfa	2e-36
2rfa_A	232	Transient receptor potential cation channel subfa	4e-35
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-48
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-47
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-39
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-05
2pnn_A	273	Transient receptor potential cation channel subfa	6e-48
2pnn_A	273	Transient receptor potential cation channel subfa	6e-44
2pnn_A	273	Transient receptor potential cation channel subfa	3e-32
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2pnn_A	273	Transient receptor potential cation channel subfa	7e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-47
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-38
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-35
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-32
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-46
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-45
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-39
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-45
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-43
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-38
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-38
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-43
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-41
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-37
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-36
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-34
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-43
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-42
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-33
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-32
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-43
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-38
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-35
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-29
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-43
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-41
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-38
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-33
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-42
2etb_A	256	Transient receptor potential cation channel subfam	4e-42
2etb_A	256	Transient receptor potential cation channel subfam	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-37
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-35
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-35
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-37
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-36
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-34
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-34
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-32
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-33
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-33
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-30
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	1e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  382 bits (985), Expect = e-124
 Identities = 118/402 (29%), Positives = 178/402 (44%), Gaps = 31/402 (7%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
                + LH      ++ ++K  L    A    + +   +T L++AA  G  +  + LL+
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLL-QRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
             A +N    +  TPL  A+  GH+ +VKLLL++ A+ N +   G T L  AA  GH+E 
Sbjct: 69  NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE- 127

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                    V  LL   A       +G T L  +A  G   +   +LE DA  N    +G
Sbjct: 128 --------TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
            T L V+            +V +LL +G         G TPL +AA +   +V   LL+ 
Sbjct: 180 LTPLHVAV-----HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234

Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
               +     G TPL  AA  GHA  VALLL   A  +  +  G T L + A +G++ V 
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 294

Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
           + L+  G              +D       G+TPLH A+  G+ ++ + LL+  A V+  
Sbjct: 295 DVLIKHG------------VMVDAT--TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
              G +PL  AAQ GH  +V + L+   A+ N+ S DG T L
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPL 381

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  377 bits (972), Expect = e-122
 Identities = 118/372 (31%), Positives = 174/372 (46%), Gaps = 29/372 (7%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
                 + G T L+VA+  G +  V+ LL+ GA+ N ++ +  TPL  A+  GH+ V K 
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
           LLQ+ A VN      +T L  AA  GH           +VKLLL   A+ N A + G T 
Sbjct: 66  LLQNKAKVNAKAKDDQTPLHCAARIGHTN---------MVKLLLENNANPNLATTAGHTP 116

Query: 490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK 549
           L  +A  GH + V ++LE +A        G T L V+A       G  +V  +LLE+ A 
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA-----KYGKVRVAELLLERDAH 171

Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
            +   + G+TPL VA    + D+ ++LL           +G TPL  AA          L
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC 669
           L +G   +    +G T L +AA +G+ ++V  LL +                +    +  
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--------------ANGNLGNKS 277

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
           G TPLH  A EGH  V   L++ G  VD     G  PL +A+  G+  LV+ FL Q++A+
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQAD 336

Query: 730 VNQKSHDGRTAL 741
           VN K+  G + L
Sbjct: 337 VNAKTKLGYSPL 348

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  374 bits (962), Expect = e-120
 Identities = 121/404 (29%), Positives = 180/404 (44%), Gaps = 32/404 (7%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           + K ++ LH      +  + K  L   +A  +    K  QT L+ AA  G  + V++LLE
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLL-QNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
             AN N     G TPL  A+  GH   V  LL+  A   C    G T L  AA  G + V
Sbjct: 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                     +LLL   AH NAA   G T L  + +  + DIV  +L      +    +G
Sbjct: 162 ---------AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
            T L ++A          +V   LL+ G   + E  +G+TPL +AA EGH ++  +LL  
Sbjct: 213 YTPLHIAA-----KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
           +A+ +  +KSG TPL   A  GH     +L+  G  VD     G T L VA+  GNI +V
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327

Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
             LL         A        D   +   G++PLH AA +GH ++   LL+ GA  ++V
Sbjct: 328 KFLLQHQ------A--------DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373

Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYE--ANVNQKSHDGRTAL 741
            +DG  PL +A + G+  + ++     +  + V        +  
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  349 bits (899), Expect = e-111
 Identities = 117/341 (34%), Positives = 160/341 (46%), Gaps = 29/341 (8%)

Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
           G +       G TPL  AS+ GH  +VK LLQ GA  N S++   T L  AA  GH E  
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE-- 61

Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
                  V K LL   A VNA   + +T L  +A +GH ++V  +LE +A+ N     G 
Sbjct: 62  -------VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH 114

Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
           T L ++A      +G+ + V  LLEK A      ++G TPL VAA  G   V E+LLE +
Sbjct: 115 TPLHIAA-----REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
           A  +   K+G TPL  A    +   V LLL  G    +    G T L +AA Q  ++V  
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229

Query: 641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
            LL  G            GS + +     G TPLH AA EGH E+   LL   A  +  +
Sbjct: 230 SLLQYG------------GSANAE--SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275

Query: 701 NDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
             G  PL L AQ+GH  + ++ ++     V+  +  G T L
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPL 315

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  290 bits (746), Expect = 3e-89
 Identities = 103/353 (29%), Positives = 151/353 (42%), Gaps = 34/353 (9%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
            +   + LH    E ++  +   L   EA     + K G T L+VAA  G V   ++LLE
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALL-EKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
             A+ N     G TPL  A    +  +VKLLL  G   +     G T L  AA    +EV
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                     + LL  G   NA   +G T L  +A  GHA++V+ +L   A+ N  +  G
Sbjct: 228 ---------ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
            T L + A       G+  V  +L++ G  VD   R G TPL VA+  G+  + + LL++
Sbjct: 279 LTPLHLVAQE-----GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333

Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
           +AD +   K G +PL  AA  GH   V LLL  GA  + + ++G T L++A   G I V 
Sbjct: 334 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 393

Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI-------EGHEEV 685
           + L              +T  +     D    +              EG E +
Sbjct: 394 DVLKVVT---------DETSFVLVS--DKHRMSFPETVDEILDVSEDEGEELI 435

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  198 bits (507), Expect = 8e-56
 Identities = 66/210 (31%), Positives = 92/210 (43%), Gaps = 19/210 (9%)

Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
            G         G+TPL VA+F GH  + + LL+  A  +  +    TPL  AA  GH   
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
              LL   A V+    + +T L  AA  G+ ++V  LL+                 +   
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA--------------NPNL 108

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
               G TPLH AA EGH E   ALLE  A    +   G  PL +AA+ G   + E+ LE+
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168

Query: 726 YEANVNQKSHDGRTALRV----NMKNVTKL 751
            +A+ N    +G T L V    N  ++ KL
Sbjct: 169 -DAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.0 bits (144), Expect = 4e-09
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADD 941
            AAQ+GH D V LLL  GA P      G     +A + G+ +V  +LK   D+
Sbjct: 350 QAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 5e-09
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            AA+ GH + V+LLL   A+P  +   G     +AA+ GH ETVL LL++ A       +
Sbjct: 86  CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145

Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
            F  +H      +AK G   V  LL
Sbjct: 146 GFTPLHV-----AAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AAQEGH + V LLL   A+    +  G     + A+ GH  V  +L
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           IAA++   +  R LL YG         G     +AA+ GH E V  LL + A+
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 12/91 (13%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
           +A+  G+   V+ LL + AD       G +    AA+ GH + V  LLK  A      S+
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376

Query: 944 YF--VHYYYYYNSAKSGHETVLRLLKQYADD 972
               +       + + G+ +V  +LK   D+
Sbjct: 377 GTTPLAI-----AKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.3 bits (129), Expect = 3e-07
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 13/91 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
           +AA+ G      LLL   A P  +   G     VA    + + V  LL +          
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 211

Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
            +  +H      +AK    E    LL+    
Sbjct: 212 GYTPLHI-----AAKQNQVEVARSLLQYGGS 237

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 5e-07
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
           +A+  GH   V+ LL  GA P  S+        +AA++GH E    LL+  A       +
Sbjct: 20  VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79

Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
               +H      +A+ GH  +++LL
Sbjct: 80  DQTPLHC-----AARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 1e-06
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           + AQEGH     +L+ +G     +   G     VA+  G+ + V  LL+  AD
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  339 bits (873), Expect = e-108
 Identities = 68/380 (17%), Positives = 129/380 (33%), Gaps = 33/380 (8%)

Query: 369 LDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
           L+    D      ++VAA +G  D V+ L+E G +    +  G T L  A   G     K
Sbjct: 11  LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK 70

Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
            L   G   +     G+  +  A      +         +V  L+            G+ 
Sbjct: 71  YLASVGEVHSLWH--GQKPIHLAVMANKTD---------LVVALVEGAKER------GQM 113

Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
                      ++       +   + +   G+TAL            Y +++ IL++ GA
Sbjct: 114 PESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGL---GPEYLEMIKILVQLGA 164

Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLE-----NEADQDHIDKSGRTPLWAAASMGHA 603
               +D+   TPL+ A    +R+  +++++     +    D+ +K G + L  A  +   
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224

Query: 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDE 663
                 +  G  V+  D E    L ++     + +  +LL +  +    A     G+   
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT-TV 283

Query: 664 QHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFL 723
                     +  AA    +EV + L E   +V +  N G    +   +     +  M L
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343

Query: 724 EQYEANVNQKSHDGRTALRV 743
               A V  +S     +  V
Sbjct: 344 AP-SAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  276 bits (709), Expect = 8e-85
 Identities = 55/391 (14%), Positives = 114/391 (29%), Gaps = 64/391 (16%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D +N   +H    +   + ++  L         + ++ G TAL++A   G VD  + L  
Sbjct: 17  DDENMEKIHVAARKGQTDEVR-RLIETGV-SPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            G   +     G  P+  A     + +V  L++   +       G+            EV
Sbjct: 75  VGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECDEREV 126

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG--HADIVSSILEYDADINQQDN 517
                               +    +G+TAL     +G  + +++  +++  A    +D 
Sbjct: 127 ---------------NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171

Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLE-----KGAKVDHEDREGMTPLLVAAFEGHRDV 572
              T L  +           + + ++++        ++D+ +++G + L  A      DV
Sbjct: 172 ADETPLMRAMEF-----RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226

Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA----------- 621
               +E   D +  D     PL+ +           LL                      
Sbjct: 227 AMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPD 286

Query: 622 --EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
                  +  AA     +V+  L ++               +      N G         
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEKL------------DEVVRS--LNTGAGGAVKRKK 332

Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
           +    V R  L   A V            ++
Sbjct: 333 KAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  245 bits (629), Expect = 2e-73
 Identities = 59/328 (17%), Positives = 108/328 (32%), Gaps = 41/328 (12%)

Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR 487
            +      +   SD      +  AA  G  +          V+ L+  G      +  G 
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTD---------EVRRLIETGVSPTIQNRFGC 54

Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
           TAL  +   G  D    +       +     G+  + ++ +          +V  L+E  
Sbjct: 55  TALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-----NKTDLVVALVEGA 107

Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG--HASC 605
            +       G  P  +      R+V      NE         G+T L     +G  +   
Sbjct: 108 KER------GQMPESLLNECDEREV------NEIGSHVKHCKGQTALHWCVGLGPEYLEM 155

Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
           + +L+  GA     D    T L  A    N + ++ ++D               SL   +
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT---------VPSKSSLRLDY 206

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            +  G + LH+A +   E+V    +E G  V+  DN+   PL L+ +     L +  L++
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266

Query: 726 --YEANVNQKSHDGRTALRVNMKNVTKL 751
                      H+G T L   +  +  +
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFV 294

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 15/100 (15%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFVH 947
            A     ED     +  G D    D+       ++ ++        LL++          
Sbjct: 217 WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276

Query: 948 YYY--------------YYNSAKSGHETVLRLLKQYADDI 973
           Y+                  +A    + VL+LL++  D++
Sbjct: 277 YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEY--- 944
           +AA++G  D VR L+  G  P   +  G  A  +A K G  +T   L       S +   
Sbjct: 26  VAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85

Query: 945 -FVHYYYYYNSAKSGHETVLRLLKQYADDI 973
             +H      +  +    ++  L + A + 
Sbjct: 86  KPIHL-----AVMANKTDLVVALVEGAKER 110

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 9/47 (19%), Positives = 16/47 (34%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AA    ++ ++LL     +   S + G        K     V R+ 
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  298 bits (765), Expect = 5e-93
 Identities = 94/374 (25%), Positives = 142/374 (37%), Gaps = 50/374 (13%)

Query: 370 DLELVDKHGQTALNVAAHQG-FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
              L  ++ +  L  AA  G     + +L     N + +D    TPL  A+      +V+
Sbjct: 16  KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
           LLLQ GADV+  D GG   L  A   GH EV          +LLL  GA VNA D    T
Sbjct: 76  LLLQHGADVHAKDKGGLVPLHNACSYGHYEV---------TELLLKHGACVNAMDLWQFT 126

Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
            L  +A     ++ S +L + AD    +  G++A+ ++      +    + ++   +  +
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP-----TPELRERLTYEFKGHS 181

Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC--- 605
                       LL AA E      +  L  E       +S  T L  A +  H      
Sbjct: 182 ------------LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229

Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
             LLL  GA V+  + +  T L VAA + + DV+  L   G              ++   
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG------------AKMNA-- 275

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            D+ G T LH AA+ GH + CR LL  G+    +   G     +  +     L E     
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSE----- 330

Query: 726 YEANVNQKSHDGRT 739
               +     D R 
Sbjct: 331 -STPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  298 bits (765), Expect = 5e-93
 Identities = 86/380 (22%), Positives = 136/380 (35%), Gaps = 58/380 (15%)

Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPL-RSASWGGHSAVVKLLLQSG 434
           + G++AL              L +  A    T       L  +A  G    ++ LL    
Sbjct: 2   EFGKSAL-------------DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
            + + SD    T L  AA    + +         V+LLL  GA V+A D  G   L  + 
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRI---------VQLLLQHGADVHAKDKGGLVPLHNAC 99

Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             GH ++   +L++ A +N  D    T L  +A          +V S+LL  GA     +
Sbjct: 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK-----NRVEVCSLLLSHGADPTLVN 154

Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
             G + + +A     R+                  G + L AA      + V   L    
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEF-----------KGHSLLQAARE-ADLAKVKKTLALEI 202

Query: 615 YVDTIDAEGRTVLSVAAAQG---NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671
                     T L  A A        V   LL +G               +   ++    
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKG--------------ANVNEKNKDFM 248

Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
           TPLH AA   H +V   L + GAK++ +D+ G+  L  AA  GH     + L  Y ++ +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPS 307

Query: 732 QKSHDGRTALRVNMKNVTKL 751
             S  G TA ++  + V ++
Sbjct: 308 IISLQGFTAAQMGNEAVQQI 327

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  294 bits (756), Expect = 1e-91
 Identities = 88/378 (23%), Positives = 138/378 (36%), Gaps = 51/378 (13%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
               +  L +     N   L   L      +    D    T L++AA    V  VQ+LL+
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNV-NCHASDGRKSTPLHLAAGYNRVRIVQLLLQ 79

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            GA+++  D  G  PL +A   GH  V +LLL+ GA VN  D+   T L  AA    +E 
Sbjct: 80  HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE- 138

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                   V  LLL+ GA     +  G++A+  +      + +             +  G
Sbjct: 139 --------VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL-----------TYEFKG 179

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR---DVCEIL 576
            + L  +       +     V   L        + +   T L  A    H     V E+L
Sbjct: 180 HSLLQAAR------EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233

Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           L   A+ +  +K   TPL  AA   H   + +L   GA ++ +D+ G+T L  AA  G++
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL 293

Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
                LL  G      +        D       G+T           E  + +L     +
Sbjct: 294 QTCRLLLSYG------S--------DPSIISLQGFTAAQMGN-----EAVQQILSESTPM 334

Query: 697 DQVDNDGRAPLILAAQDG 714
              D D    L+ A++ G
Sbjct: 335 RTSDVDY--RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.0 bits (136), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFVH 947
            AA +   +   LLL +GADP   +  G++A  +A      E +    K ++      + 
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL-----LQ 184

Query: 948 YYYYYNSAKSGHETVLRLLKQYADDI 973
                 + ++    V + L     + 
Sbjct: 185 A-----AREADLAKVKKTLALEIINF 205

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.0 bits (118), Expect = 5e-06
 Identities = 14/47 (29%), Positives = 16/47 (34%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A   GH +   LLL +GA     D         AA      V  LL
Sbjct: 97  NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.6 bits (117), Expect = 6e-06
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
           +AA       V+LLL +GAD    D  G      A   GH E    LLK  A     D  
Sbjct: 64  LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123

Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
            F  +H      +A      V  LL
Sbjct: 124 QFTPLHE-----AASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+  H D + +L  +GA     D  G+ A   AA +GH    RLL
Sbjct: 253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 889 IAAQEGHE---DCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A    H        LLL  GA+    +        VAA+  H  V+ +L
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 16/47 (34%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A     E  + LL     +   SD        +AA      +++LL
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  274 bits (704), Expect = 3e-85
 Identities = 68/354 (19%), Positives = 122/354 (34%), Gaps = 77/354 (21%)

Query: 384 VAAHQGFVDAVQILLEAGANINHTDCE-----GWTPLRSASWGGHSAVVKLLLQSGADVN 438
           + +          L+  G+++   D +     G  P     + G       LL +    +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
                  + +  AA  GH            ++ L++ G  VN   ++  + L  +   GH
Sbjct: 56  AVS--DWSPMHEAAIHGHQL---------SLRNLISQGWAVNIITADHVSPLHEACLGGH 104

Query: 499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGM 558
              V  +L++ A +N    D  T L  +        G    V++LL+ GA V   + +  
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNAC-----VSGSWDCVNLLLQHGASVQ-PESDLA 158

Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
           +P+  AA  GH +    L+    + DH      TPL+ A      +CV  LL  GA V+ 
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN- 217

Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
                                                          +     +PLH   
Sbjct: 218 -----------------------------------------------QGKGQDSPLHAVV 230

Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
               EE+   L++ GA     + +G+ P+ L   +    L ++FLE+  A++ +
Sbjct: 231 RTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  248 bits (635), Expect = 2e-75
 Identities = 64/292 (21%), Positives = 114/292 (39%), Gaps = 26/292 (8%)

Query: 351 CAENNINLLKTFLK---SCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHT 407
            + ++ +     +       ++D +     G          G       LL      +  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDAV 57

Query: 408 DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC 467
               W+P+  A+  GH   ++ L+  G  VN       + L  A  GGHL          
Sbjct: 58  S--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS--------- 106

Query: 468 VVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA 527
            VK+LL  GA VN   ++  T L  +   G  D V+ +L++ A +   ++D  + +  +A
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAA 165

Query: 528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID 587
                  G+ + V+ L+  G  +DH+     TPL +A     R   + LLE+ AD +   
Sbjct: 166 -----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QG 219

Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
           K   +PL A           LL+ +GA     +AEG+  + +   +  +  +
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  247 bits (632), Expect = 5e-75
 Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 17/243 (6%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
                + ++ AA  G   +++ L+  G  +N    +  +PL  A  GGH + VK+LL+ G
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
           A VN       T L  A   G  +          V LLL  GA V   +S+  + +  +A
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWD---------CVNLLLQHGASVQ-PESDLASPIHEAA 165

Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             GH + V+S++ Y  +I+ + +   T L ++             V  LLE GA V+ + 
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-----QQRACVKKLLESGADVN-QG 219

Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
           +   +PL         ++  +L++  AD    +  G+ P+              L   GA
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGA 278

Query: 615 YVD 617
            + 
Sbjct: 279 SLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  206 bits (527), Expect = 2e-60
 Identities = 57/244 (23%), Positives = 95/244 (38%), Gaps = 20/244 (8%)

Query: 340 DSKN-QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
           D+ +  S +H+     +   L+  + S     + ++     + L+ A   G +  V+ILL
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNLI-SQGW-AVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
           + GA +N    +  TPL +A   G    V LLLQ GA V        + +  AA  GH+E
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVE 171

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
                     V  L+A G +++   S   T L  +        V  +LE  AD+N Q   
Sbjct: 172 ---------CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKG 221

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
             + L              ++  +L++ GA    ++ EG  P+ +   E        L  
Sbjct: 222 QDSPLHAVV-----RTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-LFLER 275

Query: 579 NEAD 582
             A 
Sbjct: 276 EGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  200 bits (510), Expect = 6e-58
 Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 25/251 (9%)

Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
           + S++  H    S ++   + +   D                  G      I L     +
Sbjct: 1   MGSSH-HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPA------GPRDFPGIRLLSNP-L 52

Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
             +     +P+  AA  GH+     L+      + I     +PL  A   GH SCV +LL
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
             GA V+ + A+  T L  A   G+ D VN LL  G      A             ++  
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG------A---------SVQPESDL 157

Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
            +P+H AA  GH E   +L+  G  +D   +    PL LA ++     V+  LE   A+V
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADV 216

Query: 731 NQKSHDGRTAL 741
           NQ      + L
Sbjct: 217 NQGK-GQDSPL 226

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  119 bits (302), Expect = 5e-30
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           +S   S +H+     ++  +   L +    +++    H  T L +A        V+ LLE
Sbjct: 154 ESDLASPIHEAARRGHVECVN-SLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLE 211

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           +GA++N       +PL +        +  LL+  GAD    +  G+  +        L  
Sbjct: 212 SGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-- 268

Query: 460 TIVLGPLCVVKLLLAAGAHVNAA 482
                       L   GA +   
Sbjct: 269 --------AQLFLEREGASLPKP 283

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.4 bits (132), Expect = 6e-08
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
              +   E+   LL+ +GAD +  +  G+    +         L L ++ A 
Sbjct: 228 AVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA+ GH +CV  L+ YG +  H          +A ++     V +LL+  AD
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A   GH  CV++LL +GA               A  SG    + LL
Sbjct: 98  EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 3e-06
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 13/90 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
           +A +     CV+ LL  GAD         +      ++   E    L+   AD    ++E
Sbjct: 196 LACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254

Query: 944 YF--VHYYYYYNSAKSGHETVLRLLKQYAD 971
               V                L L ++ A 
Sbjct: 255 GKRPVEL-----VPPESPLAQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.6 bits (117), Expect = 4e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AA  GH+  +R L+  G           +    A   GH + +++L
Sbjct: 65  EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  273 bits (700), Expect = 2e-84
 Identities = 81/330 (24%), Positives = 129/330 (39%), Gaps = 36/330 (10%)

Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           +   D +     +   W G    ++  +            G   L A + G   E     
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSG-DTEE---- 55

Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
                V  LL  GA +N A+ +G TAL  +    + D+V  ++E  A+INQ DN+G   L
Sbjct: 56  -----VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110

Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
             +A C     GY  +   L+ +GA V   + EG TPL +A  E   ++ +  + N    
Sbjct: 111 HAAASC-----GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV-NRQGV 164

Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
           D               +        L             G T L VAAA+G  +V+  L+
Sbjct: 165 D-----IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 644 DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG 703
                            ++ +  D  GWTPLH AA  G EE CR L+E    ++ V+  G
Sbjct: 220 QAR------------YDVNIK--DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 704 RAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
           +    +A +D   +L E+  ++     ++K
Sbjct: 266 QTAFDVADEDILGYLEEL-QKKQNLLHSEK 294

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  250 bits (642), Expect = 4e-76
 Identities = 69/314 (21%), Positives = 112/314 (35%), Gaps = 36/314 (11%)

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
           +  +D   +   +   W G             ++  +           +G   L A +  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETD---------LEPPVVKRKKTKVKFDDGAVFLAACSS- 50

Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
           G  + V  +LE  ADIN  + DG TAL  +       D    +V  L+E GA ++  D E
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQAC-----IDDNVDMVKFLVENGANINQPDNE 105

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
           G  PL  AA  G+ D+ E L+   A    ++  G TPL  A        +   +      
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ--- 162

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
                +              D    L    +              ++      G T LH 
Sbjct: 163 ---GVDIEAARKEEERIMLRDARQWLNSGHI--------------NDVRHAKSGGTALHV 205

Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
           AA +G+ EV + L++A   V+  D DG  PL  AA  G      + +E    ++   +  
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKV 264

Query: 737 GRTALRVNMKNVTK 750
           G+TA  V  +++  
Sbjct: 265 GQTAFDVADEDILG 278

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  250 bits (641), Expect = 5e-76
 Identities = 62/332 (18%), Positives = 120/332 (36%), Gaps = 35/332 (10%)

Query: 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
           +++ D   +    +    G    ++  +           +G   L  A   G +  V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRL 59

Query: 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490
           L+ GAD+N +++ G TAL  A    ++++         VK L+  GA++N  D+EG   L
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDM---------VKFLVENGANINQPDNEGWIPL 110

Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
            A+A  G+ DI   ++   A +   +++G T L ++       +   +++   + +    
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE-----EEAMEELLQNEVNRQGV- 164

Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
                +             RD  + L     +     KSG T L  AA+ G+   + LL+
Sbjct: 165 -----DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
                V+  D +G T L  AA  G  +    L++                ++    +  G
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL------------CDMEA--VNKVG 265

Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
            T    A  +    +     +      +    
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  215 bits (551), Expect = 2e-63
 Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 24/270 (8%)

Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
            + +V    C+  +   +   L    A D+   +  G TAL+ A     VD V+ L+E G
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLL-ERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
           ANIN  D EGW PL +A+  G+  + + L+  GA V   +  G T L  A      E   
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE--- 153

Query: 462 VLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
                 +++  +   G  + AA  E              D    +     +  +    G 
Sbjct: 154 ------LLQNEVNRQGVDIEAARKEEERI-------MLRDARQWLNSGHINDVRHAKSGG 200

Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
           TAL V+A     + GY +V+ +L++    V+ +D +G TPL  AA  G  + C IL+EN 
Sbjct: 201 TALHVAA-----AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLL 610
            D + ++K G+T    A          L  
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.3 bits (194), Expect = 9e-16
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH   A+    +LK  L      D+ + D  G T L+ AAH G  +A +IL+E   ++  
Sbjct: 203 LHVAAAKGYTEVLK-LLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
            +  G T    A       + +L  +     +   
Sbjct: 261 VNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.0 bits (110), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA +G+ + ++LL+    D    D+ G      AA  G E   R+L
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFVH 947
            AA  G+ D    L+  GA     +  G     +A +    E +   + +   D E    
Sbjct: 112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171

Query: 948 YYYYYNSAKSGHETVLRLLKQYADD 972
                       +    L   + +D
Sbjct: 172 EEERIML----RDARQWLNSGHIND 192

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 5e-05
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSE 943
            AA  G E+  R+L+    D +  +  G+ AF VA +           KQ    SE
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            A   G  + V  LL  GAD  +++  G  A   A    + + V  L++  A+    D+E
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 944 YF--VHYYYYYNSAKSGHETVLRLL 966
            +  +H      +A  G+  +   L
Sbjct: 106 GWIPLHA-----AASCGYLDIAEYL 125

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  273 bits (701), Expect = 1e-83
 Identities = 73/375 (19%), Positives = 129/375 (34%), Gaps = 37/375 (9%)

Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
           M + +     H+    +  +LL+             +  +           G        
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFN 80

Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457
                     + E    L + +  G  A+ + + +   ++       RT L   A     
Sbjct: 81  HTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSA 138

Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
           E +  L  +   K  +AAGA VNA D +  T L+ +       +V+ +++  AD    + 
Sbjct: 139 EKSEDL-IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK 197

Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEK---GAKVDHEDREGMTPLLVAAFEGHRDVCE 574
             R+AL  +A           ++  +L        ++  DR GMT L++ A    RD   
Sbjct: 198 SERSALHQAAAN-----RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252

Query: 575 I---LLENEADQDHI--------DKSGRTPLWAAASMGHASCVALLL-FWGAYVDTIDAE 622
               L+E  A  D+            GRT L  AA + +   V  L+   G+  D  D +
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED 312

Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           G+T + +AA +G I+VV  L+ +G      A          +  D    T    A    H
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQQG------A--------SVEAVDATDHTARQLAQANNH 358

Query: 683 EEVCRALLEAGAKVD 697
             +         + +
Sbjct: 359 HNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  219 bits (559), Expect = 1e-63
 Identities = 60/350 (17%), Positives = 109/350 (31%), Gaps = 69/350 (19%)

Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
           W P                 +     + S    + +L  A++ G+++             
Sbjct: 17  WMPPMENE------------EKNRKNHQSITSSQHSLLEASYDGYIKR------------ 52

Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
                   N                G+  +            + + +    L   A    
Sbjct: 53  ------QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA---- 102

Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE--------ADQ 583
              G   +   +  +   +  + R   T L   A     +  E L+ +E        AD 
Sbjct: 103 --AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159

Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
           + +D    TPL  A        VA L+  GA     +   R+ L  AAA  +  ++  +L
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 219

Query: 644 DRGMILGCLAGGRQTGS-LDEQHRDNCGWTPLHYAAIEGHEE---VCRALLEAGAKV--- 696
           +            +    ++E   D  G T L   A     +     + L+E GAKV   
Sbjct: 220 NST----------KLKGDIEEL--DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

Query: 697 -----DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
                D     GR  L  AAQ  +  +V+  + +  +N +++  DG+T +
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-AD 940
           +AAQEG  + V  L+  GA  +  D     A ++A  + H  ++ +  +   +
Sbjct: 319 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +A        V  L+  GADP   +   R+A   AA +    ++  +
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AAQ  +   V+ L+   G++    D  G+    +AA+ G   V+  L
Sbjct: 285 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  267 bits (685), Expect = 2e-82
 Identities = 90/333 (27%), Positives = 133/333 (39%), Gaps = 56/333 (16%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQS 433
                  L  A     VD VQ LLE GAN+N  + E GWTPL +A       +V+LLL+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GAD       G T    AA  G +++         +KL L+ GA VN  D  G TA + +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKL---------LKLFLSKGADVNECDFYGFTAFMEA 112

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A  G    +  + +  A++N +                                   +  
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKED----------------------------QERL 144

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASC----VAL 608
            + G T L+ AA +GH +V +ILL+   AD +  D  GR  L  A      S       L
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN 668
           LL  GA V+     G+T L +A  + ++ +V +LL++  I             +    D+
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-------------EINDTDS 251

Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDN 701
            G T L  A     +++   L + GA  D  D 
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  247 bits (632), Expect = 5e-75
 Identities = 85/294 (28%), Positives = 129/294 (43%), Gaps = 25/294 (8%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKH-GQTALNVAAHQGFVDAVQILL 398
             ++  +L K     +++L++  L    A ++   ++  G T L+ A      D V++LL
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLL-EGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
             GA+       G TP   A+  G   ++KL L  GADVN  D  G TA   AA  G ++
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAAD----------SEGRTALIASAYMGHADIVSS-ILE 507
                     +K L   GA+VN               G TAL+ +A  GH +++   + E
Sbjct: 120 ---------ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

Query: 508 YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE 567
             AD+N  DN GR AL  + L          +  +LL+ GA V+     G TPL++A  +
Sbjct: 171 MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 568 GHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
            H  + + LLE E  + +  D  G+T L  A  +       LL   GA  D  D
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  239 bits (612), Expect = 3e-72
 Identities = 79/337 (23%), Positives = 118/337 (35%), Gaps = 88/337 (26%)

Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLEVTIVLGPLCV 468
           E    L  A       +V+ LL+ GA+VN  +  GG T L  A      ++         
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI--------- 54

Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V+LLL  GA        G T  + +A  G   ++   L   AD+N+ D  G T       
Sbjct: 55  VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT------- 107

Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
                                            + AA  G     + L +  A+ +   K
Sbjct: 108 -------------------------------AFMEAAVYGKVKALKFLYKRGANVNLRRK 136

Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
           +                           + +   G T L  AA +G+++V+  LLD    
Sbjct: 137 TKED-----------------------QERLRKGGATALMDAAEKGHVEVLKILLD---- 169

Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH----EEVCRALLEAGAKVDQVDNDGR 704
                   + G+ D    DN G   L +A +       E +   LL+ GA V+     G+
Sbjct: 170 --------EMGA-DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

Query: 705 APLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            PLILA +  H  LV+  LEQ    +N    DG+TAL
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  190 bits (485), Expect = 1e-54
 Identities = 78/258 (30%), Positives = 107/258 (41%), Gaps = 22/258 (8%)

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCE 574
             +    L  +       +    +V  LLE GA V+ ++ E G TPL  A      D+ E
Sbjct: 2   AVEDNHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG 634
           +LL + AD     K+G TP   AA  G    + L L  GA V+  D  G T    AA  G
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 635 NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAG 693
            +  +  L  RG  +      R+    D++     G T L  AA +GH EV + LL E G
Sbjct: 117 KVKALKFLYKRGANVNL----RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172

Query: 694 AKVDQVDNDGRAPLILAAQDGHYHLVEM---FLEQYEANVNQKSHDGRTAL----RVNMK 746
           A V+  DN GR  LI A        VE     L  + A+VN +   G+T L         
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 747 NVTKLSFWYLLIQPLLNI 764
            + +     LL Q  + I
Sbjct: 233 GLVQ----RLLEQEHIEI 246

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  150 bits (381), Expect = 1e-40
 Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 20/169 (11%)

Query: 355 NINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL-EAGANINHTDCEGWT 413
           N+NL     +     D E + K G TAL  AA +G V+ ++ILL E GA++N  D  G  
Sbjct: 130 NVNL-----RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 414 PLRSASWGGHS----AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
            L  A          A+  LLL  GADVN     G+T L  A    HL +         V
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL---------V 235

Query: 470 KLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
           + LL      +N  DS+G+TAL+ +  +    I   + +  A  +  D 
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 92.5 bits (231), Expect = 1e-20
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 340 DSKNQSVLHKLCAENNINLLKT---FLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQI 396
           D+  ++ L      ++ + ++     L    A D+ +  + G+T L +A  +  +  VQ 
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQR 237

Query: 397 LLE-AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM 442
           LLE     IN TD +G T L  A       + +LL + GA  +C D+
Sbjct: 238 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 6e-07
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA  G    ++L L  GAD    D  G  AF  AA  G    L+ L
Sbjct: 78  LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.9 bits (123), Expect = 7e-07
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A Q   ED V LLL +GADP      G   F +AA +G  + +   L + AD
Sbjct: 45  NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 8e-06
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGH-----ETVLRLLKQYAD 940
            AA++GH + +++LL   GAD    D+ GRNA   A  S            LL   AD
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A ++ H   V+ LL     +   +D  G+ A  +A +    +    L K+ A 
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 7e-04
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 889 IAAQEGHEDCVRLLLHYGAD----------PKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AA  G    ++ L   GA+           +     G  A   AA+ GH  VL++L
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 8e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 889 IAAQEGHEDC----VRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A     +        LLL +GAD       G+    +A +  H  +++ L
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  247 bits (634), Expect = 7e-76
 Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 15/246 (6%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
           + ++  ++ ++ L+ AA  G VD   +L++AGANI+    +  TPL  A+   H   VK 
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRT 488
           L+++GA V+  D  G T L  AA  GH E         VV+ LL+ G   VN  D  G T
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYE---------VVQYLLSNGQMDVNCQDDGGWT 113

Query: 489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
            +I +    H D+V  +L   +DIN +DN+    L  +A       G   +  ILL    
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-----GCVDIAEILLAAKC 168

Query: 549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
            +   +  G +PL +AA E   D   + L  ++D    +K G TPL  A+          
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228

Query: 609 LLFWGA 614
           +     
Sbjct: 229 MSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  233 bits (596), Expect = 2e-70
 Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 15/246 (6%)

Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
            N         +PL +A+  GH  +  +L+Q+GA+++      RT L  AA   HLE   
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA-- 59

Query: 462 VLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGR 520
                  VK L+ AGA V+  D+EG T L  +A  GH ++V  +L     D+N QD+ G 
Sbjct: 60  -------VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW 112

Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
           T +  +         +  +V +LL KG+ ++  D E    L  AAF G  D+ EILL  +
Sbjct: 113 TPMIWATEY-----KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167

Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
            D   ++  G +PL  AA      CV L L   + V   + EG T L  A+    +    
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227

Query: 641 QLLDRG 646
           Q+    
Sbjct: 228 QMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  226 bits (580), Expect = 3e-68
 Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 17/245 (6%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
               +S LH      ++++    L    A +++   +  +T L  AA    ++AV+ L++
Sbjct: 8   HQNKRSPLHAAAEAGHVDICH-MLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA-DVNCSDMGGRTALRAAAWGGHLE 458
           AGA ++  D EG T L  A+  GH  VV+ LL +G  DVNC D GG T +  A    H++
Sbjct: 66  AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
           +         VKLLL+ G+ +N  D+E    L  +A+ G  DI   +L    D++  +  
Sbjct: 126 L---------VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G + L ++A      +     V + L + + V  +++EG TPL  A+          + +
Sbjct: 177 GDSPLHIAA-----RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

Query: 579 NEADQ 583
              D 
Sbjct: 232 ALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  211 bits (540), Expect = 9e-63
 Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 21/233 (9%)

Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
            +   +  + R+ L  +A       G+  +  +L++ GA +D    +  TPL+ AA   H
Sbjct: 2   MNFKMEHQNKRSPLHAAA-----EAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH 56

Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLS 628
            +  + L++  A  D  D  G T L  AA  GH   V  LL  G   V+  D  G T + 
Sbjct: 57  LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116

Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
            A    ++D+V  LL +G      +        D   RDN     LH+AA  G  ++   
Sbjct: 117 WATEYKHVDLVKLLLSKG------S--------DINIRDNEENICLHWAAFSGCVDIAEI 162

Query: 689 LLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           LL A   +  V+  G +PL +AA++  Y  V +FL + +++V  K+ +G T L
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPL 214

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.4 bits (127), Expect = 1e-07
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           IAA+E   DCV L L   +D    +  G    + A+ +    + L++ K   D
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 1e-06
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            AA+ GH D   +L+  GA+        R     AA++ H E V  L+K  A     D+E
Sbjct: 17  AAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE 76

Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYADDI 973
               +H      +AK GH E V  LL     D+
Sbjct: 77  GSTCLHL-----AAKKGHYEVVQYLLSNGQMDV 104

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A +  H D V+LLL  G+D    D+        AA SG  +    LL    D
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA  G  D   +LL    D    +  G +   +AA+    + V+  L + +D
Sbjct: 150 WAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.6 bits (99), Expect = 6e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA++GH + V+ LL  G  D    D  G      A +  H + V  LL + +D
Sbjct: 83  LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  246 bits (632), Expect = 2e-75
 Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 17/240 (7%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           +D +    +  A   G  +  + L+EAG ++   D E  T L  A+      +VK  +  
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 434 GADVNCSDM-GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
           GA V+        T L  A   GHL          +V  L+  GA  +  D EG + +  
Sbjct: 65  GAIVDQLGGDLNSTPLHWATRQGHLS---------MVVQLMKYGADPSLIDGEGCSCIHL 115

Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK-VVSILLEKGAKVD 551
           +A  GH  IV+ ++    D++  D +G T L  +A        ++     +LL     V+
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-----THSVDPTRLLLTFNVSVN 170

Query: 552 HEDR-EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
             D+    T L  A   G+  V  +LLE  A+ D  +  G + L  A    +   +  L 
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  241 bits (618), Expect = 1e-73
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
           ++ H D      +  A+  G     + L+++G DV   D    T L  AA    ++    
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID---- 56

Query: 463 LGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
                +VK  ++ GA V+    +   T L  +   GH  +V  +++Y AD +  D +G +
Sbjct: 57  -----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111

Query: 522 ALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR-DVCEILLENE 580
            + ++A       G+  +V+ L+ KG  VD  D+ GMTPL+ AA+  H  D   +LL   
Sbjct: 112 CIHLAAQF-----GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

Query: 581 ADQDHIDKS-GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
              +  DK    T L  A   G+ + ++LLL  GA VD  + +G + L +A  + N+ ++
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI 226

Query: 640 NQLLDRG 646
           N L +  
Sbjct: 227 NHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  234 bits (599), Expect = 6e-71
 Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 21/258 (8%)

Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
           H+   D      ++ +   G  +    ++E   D+ Q D +  T L  +A+         
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-----NRI 55

Query: 538 KVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
            +V   + KGA VD    +   TPL  A  +GH  +   L++  AD   ID  G + +  
Sbjct: 56  DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115

Query: 597 AASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN-IDVVNQLLDRGMILGCLAGG 655
           AA  GH S VA L+  G  VD +D  G T L  AA + + +D    LL            
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN------V-- 167

Query: 656 RQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
               S++   + +   T LH+A + G+  V   LLEAGA VD  +  G + L LA Q  +
Sbjct: 168 ----SVNLGDKYH-KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222

Query: 716 YHLVEMFLEQYEANVNQK 733
             ++   L++        
Sbjct: 223 VWMIN-HLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  220 bits (564), Expect = 5e-66
 Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 19/248 (7%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D  +   + K          +  L      D+   DK   T L+ AA    +D V+  + 
Sbjct: 6   DDYSTWDIVKATQYGIYERCR-ELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYIS 63

Query: 400 AGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
            GA ++    +   TPL  A+  GH ++V  L++ GAD +  D  G + +  AA  GH  
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH-ADIVSSILEYDADINQQDN 517
                    +V  L+A G  V+  D  G T L+ +AY  H  D    +L ++  +N  D 
Sbjct: 124 ---------IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174

Query: 518 -DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
               TAL  + L      G   V+S+LLE GA VD ++ +G + L +A    +  +   L
Sbjct: 175 YHKNTALHWAVL-----AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

Query: 577 LENEADQD 584
            E    + 
Sbjct: 230 QEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  178 bits (455), Expect = 5e-51
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 17/217 (7%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILL 398
           D +N ++LH     N I+L+K +  S  A  ++ +      T L+ A  QG +  V  L+
Sbjct: 39  DKENVTLLHWAAINNRIDLVK-YYISKGA-IVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96

Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
           + GA+ +  D EG + +  A+  GH+++V  L+  G DV+  D  G T L  AA+  H  
Sbjct: 97  KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-- 154

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
                  +   +LLL     VN  D     TAL  +   G+  ++S +LE  A+++ Q+ 
Sbjct: 155 ------SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208

Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
            G +AL ++            +++ L E      +++
Sbjct: 209 KGESALDLAK-----QRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  152 bits (388), Expect = 5e-42
 Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 52/207 (25%)

Query: 550 VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           + H D      ++ A   G  + C  L+E   D    DK   T L  AA       V   
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 610 LFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNC 669
           +  GA VD +                                                + 
Sbjct: 62  ISKGAIVDQLG----------------------------------------------GDL 75

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
             TPLH+A  +GH  +   L++ GA    +D +G + + LAAQ GH  +V   + +   +
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQD 134

Query: 730 VNQKSHDGRTAL-----RVNMKNVTKL 751
           V+    +G T L     R +  + T+L
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRL 161

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            A Q G  +  R L+  G D +  D         AA +   + V   + + A       +
Sbjct: 15  KATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74

Query: 944 YFV---HYYYYYNSAKSGH-ETVLRLLKQYAD 971
                 H+     + + GH   V++L+K  AD
Sbjct: 75  LNSTPLHW-----ATRQGHLSMVVQLMKYGAD 101

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.9 bits (123), Expect = 5e-07
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A ++GH   V  L+ YGADP   D  G +   +AA+ GH +++  L
Sbjct: 82  WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.5 bits (122), Expect = 6e-07
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH--ETVLRLLKQYAD 940
           +AAQ GH   V  L+  G D    D  G      AA   H  +    LL     
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.1 bits (121), Expect = 1e-06
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEY 944
            A   G+   + LLL  GA+    +  G +A  +A +  +  ++  L++      Y
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  246 bits (630), Expect = 9e-75
 Identities = 68/334 (20%), Positives = 105/334 (31%), Gaps = 69/334 (20%)

Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD---VNCSDMGGRTALRAAAWGGHLEVT 460
             +   +G T L  A    H   +  LL   A    ++  +  G+TAL  AA  G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST- 60

Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
                   V+ L AAGA V  A+  G TAL  +  +        +L+      +  +D  
Sbjct: 61  --------VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

Query: 521 TALS---------VSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
              S           A      +   +      +   +++ E+ +G TPL VA      +
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

Query: 572 VCEILLENEADQDHIDK-SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
           +  +L +  AD +  +   GRTPL  A     AS + LLL  GA                
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA------------ 220

Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
                                              R   G TPL  A +  +  + R L 
Sbjct: 221 -----------------------------------RMYGGRTPLGSALLRPNPILARLLR 245

Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
             GA   +   D  +P   +  D      +   E
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  244 bits (626), Expect = 4e-74
 Identities = 63/294 (21%), Positives = 108/294 (36%), Gaps = 32/294 (10%)

Query: 371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGAN---INHTDCEGWTPLRSASWGGHSAVV 427
              V + G TAL++A        +  LL   A    ++  +  G T L  A+  G ++ V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 428 KLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR 487
           + L  +GA V  ++ GG TAL  A                   +LL          S+  
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTC---------ACVLLQPRPSHPRDASDTY 112

Query: 488 T--------------ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
                          A + S      +      ++   +  ++ DG T L V+ +     
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH---- 168

Query: 534 DGYAKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT 592
              A++V +L + GA ++  +   G TPL +A       V E+LL+  AD       GRT
Sbjct: 169 -KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227

Query: 593 PLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
           PL +A    +     LL   GA       +  +  S + +  + D  ++  +  
Sbjct: 228 PLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  189 bits (483), Expect = 3e-54
 Identities = 43/254 (16%), Positives = 84/254 (33%), Gaps = 31/254 (12%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           +   Q+ LH        + ++  L +  A  + + ++ G TAL++A          +LL+
Sbjct: 42  NDLGQTALHLAAILGEASTVE-KLYAAGA-GVLVAERGGHTALHLACRVRAHTCACVLLQ 99

Query: 400 AGANINHTDCEGWTP--------------LRSASWGGHSAVVKLLLQSGADVNCSDMGGR 445
              +      + +                   +     +            +   +  G 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGHADIVSS 504
           T L  A      E         +V+LL  AGA +N  +   GRT L  +     A ++  
Sbjct: 160 TPLHVAVIHKDAE---------MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVA 564
           +L+  AD   +   GRT L  + L          +  +L   GA    +  + ++P   +
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLR-----PNPILARLLRAHGAPEPEDGGDKLSPCSSS 265

Query: 565 AFEGHRDVCEILLE 578
             +   D  +   E
Sbjct: 266 GSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  105 bits (265), Expect = 3e-25
 Identities = 30/168 (17%), Positives = 47/168 (27%), Gaps = 45/168 (26%)

Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
            ++ + G T L  A    H   +  LL + A  + +D                       
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---------------------- 40

Query: 644 DRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG 703
                                 +++ G T LH AAI G       L  AGA V   +  G
Sbjct: 41  ----------------------QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG 78

Query: 704 RAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKL 751
              L LA +   +      L Q   +  + + D       +    T  
Sbjct: 79  HTALHLACRVRAHTCAC-VLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 16/101 (15%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL------------- 935
           +AA  G    V  L   GA    ++  G  A  +A +    T   +L             
Sbjct: 51  LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

Query: 936 ---KQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
               Q  D +    H     +S  +         + +   +
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 7/50 (14%), Positives = 12/50 (24%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
            A    +    RLL  +GA          +    +             +Y
Sbjct: 231 SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +A +      + LLL  GADP    + GR     A    +  + RLL
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKH---SDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A    HE  +  LL + A  ++    +  G+ A  +AA  G   TV +L    A 
Sbjct: 15  LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  231 bits (591), Expect = 4e-69
 Identities = 51/323 (15%), Positives = 98/323 (30%), Gaps = 45/323 (13%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
           G    R  +    S  +K  L    D   +D+ G +A   A    ++ +         V 
Sbjct: 1   GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRL---------VC 48

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
            LL AGA  N  +      L  +A +    IV  +L    D +Q D+ G TAL  +    
Sbjct: 49  TLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS- 105

Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREG-MTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
               G  + V + ++K  ++    + G  T    A       +    L            
Sbjct: 106 ----GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAI 160

Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRT-VLSVAAAQGNIDVVNQLLDRGMI 648
             + +      GH   + LLL +    +T ++      + +A    +I+++  L      
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-- 218

Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
                                  +      +    E+ + ++E   +           L 
Sbjct: 219 ----INIY---------------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK--DLD 257

Query: 709 LAAQDGHYHLVEMFLEQYEANVN 731
           +   +    ++    E     VN
Sbjct: 258 IVKNNKLDEIISKNKELRLMYVN 280

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  228 bits (584), Expect = 3e-68
 Identities = 55/299 (18%), Positives = 100/299 (33%), Gaps = 29/299 (9%)

Query: 352 AENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEG 411
                  LK+FL S    D    D HG +A   A     V  V  LL AGA  N  +   
Sbjct: 8   NTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--N 62

Query: 412 WTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
             PL  A+    + +VK+LL SG D +  D  G TAL  A   G+++          VKL
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ---------TVKL 113

Query: 472 LLAAGAHVNAADSEG-RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
            +     +      G +T+   +  +    IVS  L              + + ++    
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKN- 171

Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLL-VAAFEGHRDVCEILLENEADQDHIDKS 589
               G+  ++ +LL+     +  +     P + +A      ++ + L + + +       
Sbjct: 172 ----GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN------- 220

Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
             +       +  A    +++       +        +        I   N+ L    +
Sbjct: 221 IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  227 bits (580), Expect = 1e-67
 Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 43/303 (14%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
           G     +   +           +  +    D  G +    A    +  +V  LL +GA  
Sbjct: 1   GMDLSRINTWK---SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
           N  +      L  AA     +         +VK+LL +G   +  D +G TAL  +   G
Sbjct: 58  NLLE--NEFPLHQAATLEDTK---------IVKILLFSGLDDSQFDDKGNTALYYAVDSG 106

Query: 498 HADIVSSILEYDADINQQDNDG-RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
           +   V   ++ +  +      G +T+   +            +VS  L +      +   
Sbjct: 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSEIP-STFDLAI 160

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP-LWAAASMGHASCVALLLFWGAY 615
            ++ + +    GH D+  +LL+     +  +     P +  A        +  L  +   
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
           +        +         + ++   ++++               ++ +         + 
Sbjct: 221 IY-------SANLENVLLDDAEIAKMIIEKH--------------VEYKSDSYTKDLDIV 259

Query: 676 YAA 678
              
Sbjct: 260 KNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  207 bits (530), Expect = 1e-60
 Identities = 39/256 (15%), Positives = 88/256 (34%), Gaps = 26/256 (10%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D    S  +   A+NN+ L+   L +  A          +  L+ AA       V+ILL 
Sbjct: 28  DVHGHSASYYAIADNNVRLVC-TLLNAGA-LKN--LLENEFPLHQAATLEDTKIVKILLF 83

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLE 458
           +G + +  D +G T L  A   G+   VKL ++    +      G +T+   A     + 
Sbjct: 84  SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
                    +V   L+         +   + +  +   GH D++  +L+Y    N  ++ 
Sbjct: 144 ---------IVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
                    + +   +   +++  L +    +        +  L        ++ ++++E
Sbjct: 194 LFIP----DIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIE 242

Query: 579 NEADQDHIDKSGRTPL 594
              +      +    +
Sbjct: 243 KHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  196 bits (501), Expect = 1e-56
 Identities = 44/254 (17%), Positives = 84/254 (33%), Gaps = 28/254 (11%)

Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
           G      +     +  + S L    D  + D  G +A   +      +D   ++V  LL 
Sbjct: 1   GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAI-----ADNNVRLVCTLLN 52

Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
            GA  +  +     PL  AA      + +ILL +  D    D  G T L+ A   G+   
Sbjct: 53  AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110

Query: 606 VALLLFWGAYVDTIDAEG-RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
           V L +     +      G +T    A    ++ +V+  L                     
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI---------------PST 155

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI-LAAQDGHYHLVEMFL 723
                  + +H     GH ++   LL+     +  ++    P I LA  +    +++   
Sbjct: 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF 215

Query: 724 EQYEANVNQKSHDG 737
           +  + N+   + + 
Sbjct: 216 KY-DINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  115 bits (290), Expect = 2e-28
 Identities = 14/144 (9%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP-LRSASWGGHSAVVKLLLQS 433
                + +++    G VD + +LL+   + N  +   + P ++ A       +++ L + 
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
             ++        +A          E+          K+++       +        ++ +
Sbjct: 218 DINIY-------SANLENVLLDDAEI---------AKMIIEKHVEYKSDSYTKDLDIVKN 261

Query: 494 AYMGHADIVSSILEYDADINQQDN 517
             +      +  L        + N
Sbjct: 262 NKLDEIISKNKELRLMYVNCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  113 bits (284), Expect = 1e-27
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 25/167 (14%)

Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
           G     +  +   +  +   L         D  G +    A A  N+ +V  LL+ G   
Sbjct: 1   GMDL--SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG--- 54

Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709
                       +          PLH AA     ++ + LL +G    Q D+ G   L  
Sbjct: 55  ---------ALKNLLE----NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101

Query: 710 AAQDGHYHLVEMFLEQYEANVNQKSHDG-RTAL----RVNMKNVTKL 751
           A   G+   V++F+++    +      G +T+      +N  ++   
Sbjct: 102 AVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            AA       V++LL  G D    D  G  A   A  SG+ +TV   +K+          
Sbjct: 68  QAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT 127

Query: 944 YFV---HYYYYYNSAKSGH-ETVLRLLKQYADDI 973
            +    ++     +        V   L +     
Sbjct: 128 GWKTSFYH-----AVMLNDVSIVSYFLSEIPSTF 156

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A  + +   V  LL+ GA     +         AA     + V  LL    D
Sbjct: 37  YAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLD 87

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 2/53 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A        V   L              +   +  K+GH + ++ LL     
Sbjct: 135 HAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.2 bits (108), Expect = 6e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGR-NAFRVAAKSGH-ETVLRLLKQYAD 940
           I  + GH D + LLL Y      ++        ++A  +   E +  L K   +
Sbjct: 167 ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 4/53 (7%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A      + ++ L  Y  +   ++                E    +++++ +
Sbjct: 201 LAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVE 246

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  223 bits (571), Expect = 1e-67
 Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 11/206 (5%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
                  L  A  +      +IL +    ++  D EG TPL  A       + K L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALIAS 493
           AD+N  +    +    A   G  E         ++  +L      +N  +  G  ALI +
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTE---------ILAYMLKHATPDLNKHNRYGGNALIPA 113

Query: 494 AYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           A  GH D V  +LE    DI+ Q++ G TAL  +      +  Y  +V +L+E GA    
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173

Query: 553 EDREGMTPLLVAAFEGHRDVCEILLE 578
           +D  G T +  A  +G+ ++ +IL +
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  179 bits (457), Expect = 7e-52
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 515 QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
           +  +    L  +           KV  IL +   +VD  D EG TPL +A      ++ +
Sbjct: 2   KTYEVGALLEAAN-----QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAK 56

Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQ 633
            L++  AD +  +    +P   A + G    +A +L      ++  +  G   L  AA +
Sbjct: 57  ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 634 GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI-----EGHEEVCRA 688
           G+ID V  LL+ G               D   +++ G+T L  A       + ++++ + 
Sbjct: 117 GHIDNVKLLLEDGRE-------------DIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

Query: 689 LLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
           L+E GA     DN GR  +  A Q G+  + ++  +
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  160 bits (407), Expect = 5e-45
 Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 20/194 (10%)

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
             E    L  A     + V EIL +     D +D  G TPL  A           L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
           A ++  ++   +    A AQG  +++  +L                + D    +  G   
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKH-------------ATPDLNKHNRYGGNA 109

Query: 674 LHYAAIEGHEEVCRALLEAG-AKVDQVDNDGRAPLILAA-----QDGHYHLVEMFLEQYE 727
           L  AA +GH +  + LLE G   +D  ++ G   LI A         +  +V++ +E   
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-G 168

Query: 728 ANVNQKSHDGRTAL 741
           A+ + K + GRTA+
Sbjct: 169 ADQSIKDNSGRTAM 182

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  135 bits (342), Expect = 3e-36
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGA-NINHTDCEGWTPLRSASWGGHSAVVK 428
           D+ L +    +    A  QG  + +  +L+    ++N  +  G   L  A+  GH   VK
Sbjct: 64  DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 429 LLLQSG-ADVNCSDMGGRTALRAAAWG-----GHLEVTIVLGPLCVVKLLLAAGAHVNAA 482
           LLL+ G  D++  +  G TAL  A         + ++         VKLL+  GA  +  
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI---------VKLLMENGADQSIK 174

Query: 483 DSEGRTALIASAYMGHADIVSSILEYD 509
           D+ GRTA+  +   G+ +I   + +Y+
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  112 bits (284), Expect = 1e-28
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           +S + S      A+    +L  ++      DL   +++G  AL  AA +G +D V++LLE
Sbjct: 69  NSISDSPYLYAGAQGRTEILA-YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127

Query: 400 AG-ANINHTDCEGWTPLRSASWG-----GHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
            G  +I+  +  G+T L  A         +  +VKLL+++GAD +  D  GRTA+  A  
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187

Query: 454 GGHLEVTIVLGPLCVVKLLL 473
            G+ E         + K+L 
Sbjct: 188 KGYTE---------ISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 93.3 bits (233), Expect = 9e-22
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           +       L  A     ++V   L +   +VD+VD +G  PL +A  +    + +  +++
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 726 YEANVNQKSHDGRTAL 741
             A++N ++    +  
Sbjct: 62  -GADINLQNSISDSPY 76

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           IA      +  + L+  GAD    +    + +  A   G   +L  +
Sbjct: 45  IAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.4 bits (114), Expect = 5e-06
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            A Q   +    +L          D  G     +A  +   E    L+ + AD    +S 
Sbjct: 12  AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71

Query: 944 YFVHYYYYYNSAKSGH-ETVLRLLKQYADDI 973
               Y Y   +   G  E +  +LK    D+
Sbjct: 72  SDSPYLY---AGAQGRTEILAYMLKHATPDL 99

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 891 AQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
             + ++D V+LL+  GAD    D+ GR A   A + G+  + ++L QY
Sbjct: 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGHETVLRLL--KQYAD----- 940
            A  +G  + +  +L +   D    +  G NA   AA+ GH   ++LL      D     
Sbjct: 78  YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137

Query: 941 -DSEYFVHYYYYYNSAKSGHETVLRLL 966
                 +            ++ +++LL
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLL 164

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  221 bits (567), Expect = 2e-66
 Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 23/249 (9%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLE----AGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
           D+ G T L++A  QG + AV  L+      G  ++  +    TPL  A      +VV+LL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH----VNAADSEG 486
           + +GA     D  G+TA   A                 ++ LL + A     + A + +G
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTC---------LRALLDSAAPGTLDLEARNYDG 116

Query: 487 RTALIASAYMGHADIVSSILEYDADINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLE 545
            TAL  +      + V  +LE  ADI+  D   GR+ L  +            +V +LL+
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-----NSLSMVQLLLQ 171

Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
            GA V+ +   G + L  A+  G   +   L+ + AD    +    TPL  A S      
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 231

Query: 606 VALLLFWGA 614
           +       A
Sbjct: 232 LRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  211 bits (541), Expect = 7e-63
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 23/252 (9%)

Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLL----QSGADVNCSDMGGRTALRAAAWGGHLEV 459
               D +G TPL  A   G+   V  L+    Q G +++  +   +T L  A       V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA----DINQQ 515
                    V+LL+ AGA   A D  G+TA   +        + ++L+  A    D+  +
Sbjct: 62  ---------VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCE 574
           + DG TAL V+           + V +LLE+GA +D  D + G +PL+ A       + +
Sbjct: 113 NYDGLTALHVAVNT-----ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167

Query: 575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQG 634
           +LL++ A+ +    SG + L +A+  G    V  L+  GA     +    T L VA ++ 
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227

Query: 635 NIDVVNQLLDRG 646
            ID++     R 
Sbjct: 228 VIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  204 bits (523), Expect = 2e-60
 Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 23/250 (9%)

Query: 340 DSKNQSVLHKLCAENNIN---LLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQI 396
           D    + LH    + N+     L    +     +L++ +   QT L++A        V++
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR-ELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 397 LLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA----DVNCSDMGGRTALRAAA 452
           L+ AGA+    D  G T    A        ++ LL S A    D+   +  G TAL  A 
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124

Query: 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGHADIVSSILEYDAD 511
                E          V+LLL  GA ++A D + GR+ LI +       +V  +L++ A+
Sbjct: 125 NTECQE---------TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175

Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
           +N Q   G +AL  ++       G   +V  L+  GA    ++    TPL+VA      D
Sbjct: 176 VNAQMYSGSSALHSASGR-----GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230

Query: 572 VCEILLENEA 581
           +        A
Sbjct: 231 ILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  203 bits (519), Expect = 9e-60
 Identities = 57/260 (21%), Positives = 99/260 (38%), Gaps = 29/260 (11%)

Query: 479 VNAADSEGRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSD 534
              AD +G T L  +   G+   V  ++        +++  +N  +T L ++ +      
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT----- 56

Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ----DHIDKSG 590
               VV +L+  GA     DR G T   +A           LL++ A      +  +  G
Sbjct: 57  TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVAAAQGNIDVVNQLLDRGMIL 649
            T L  A +      V LLL  GA +D +D + GR+ L  A    ++ +V  LL  G   
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG--- 173

Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709
                     +++ Q     G + LH A+  G   + R L+ +GA     +     PL++
Sbjct: 174 ---------ANVNAQ--MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

Query: 710 AAQDGHYHLVEMFLEQYEAN 729
           A       ++        A+
Sbjct: 223 ARSRRVIDILR-GKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  110 bits (277), Expect = 4e-27
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 17/143 (11%)

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
               D +G T L +A  QGN+  V++L++     G          LD    +N   TPLH
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--------ELDI--YNNLRQTPLH 51

Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ---YEANVNQ 732
            A I     V R L+ AGA    +D  G+    LA +      +   L+       ++  
Sbjct: 52  LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 111

Query: 733 KSHDGRTALRV----NMKNVTKL 751
           +++DG TAL V      +   +L
Sbjct: 112 RNYDGLTALHVAVNTECQETVQL 134

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.2 bits (116), Expect = 4e-06
 Identities = 12/47 (25%), Positives = 16/47 (34%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A+  G    VR L+  GAD    +        VA       +LR  
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +A        VRLL+  GA P   D  G+ A  +A +    T LR L
Sbjct: 52  LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.1 bits (108), Expect = 4e-05
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
                S LH       + L++  L    A D  L + H  T L VA  +  +D ++    
Sbjct: 180 MYSGSSALHSASGRGLLPLVR-TLVRSGA-DSSLKNCHNDTPLMVARSRRVIDILRGKAT 237

Query: 400 AGAN 403
             A+
Sbjct: 238 RPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A +      V+LLL +GA+     + G +A   A+  G    V  L++  AD
Sbjct: 156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKH----SDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A +     C+R LL   A         ++ G  A  VA  +   ETV  LL++ AD
Sbjct: 85  LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.4 bits (101), Expect = 4e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A     ++ V+LLL  GAD    D   GR+    A ++     V  LL+  A+
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  220 bits (563), Expect = 1e-65
 Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 29/261 (11%)

Query: 369 LDLELVDKHGQTALNVAAHQGFV-------------DAVQILLEAGANI-NHTDCEGWTP 414
           +D+ +    G T L +A+  G                 +   +  GA++ N TD  G T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLA 474
           L  A+    S   K LL++ AD N  D  GRT L AA       V          ++L+ 
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV---------FQILIR 111

Query: 475 AGAH-VNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS 533
             A  ++A   +G T LI +A +    ++  ++   AD+N  D+ G++AL  +A     +
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA-----A 166

Query: 534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
                   +LL+ GA  D ++    TPL +AA EG  +  ++LL++ A++D  D   R P
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226

Query: 594 LWAAASMGHASCVALLLFWGA 614
              A    H   V LL     
Sbjct: 227 RDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  206 bits (526), Expect = 1e-60
 Identities = 78/333 (23%), Positives = 119/333 (35%), Gaps = 84/333 (25%)

Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
           ++N    +G+TPL  AS  G                     G     +        V   
Sbjct: 2   DVNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAV--- 38

Query: 463 LGPLCVVKLLLAAGAHV-NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
                 +   +  GA + N  D  G TAL  +A    +D    +LE  AD N QDN GRT
Sbjct: 39  ------ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92

Query: 522 ALSVSALCVPSSDGYAKVVSILLEKGAK-VDHEDREGMTPLLVAAFEGHRDVCEILLENE 580
            L  +            V  IL+   A  +D    +G TPL++AA      + E L+ + 
Sbjct: 93  PLHAAVSA-----DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147

Query: 581 ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVN 640
           AD + +D  G++ L  AA++ +     +LL  GA                    N D+  
Sbjct: 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA--------------------NKDM-- 185

Query: 641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
                                    ++N   TPL  AA EG  E  + LL+  A  D  D
Sbjct: 186 -------------------------QNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

Query: 701 NDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK 733
           +  R P  +A +  H+ +V   L+    + +  
Sbjct: 221 HMDRLPRDIAQERMHHDIVR-LLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  198 bits (507), Expect = 6e-58
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 29/255 (11%)

Query: 511 DINQQDNDGRTALSVSALC--------VPSSDGYAKVVSILLEKGAKVDHE-DREGMTPL 561
           D+N +  DG T L +++              +    V+S  + +GA + ++ DR G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY-VDTID 620
            +AA     D  + LLE  AD +  D  GRTPL AA S        +L+   A  +D   
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
            +G T L +AA      ++  L++                ++    D+ G + LH+AA  
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSH------------ADVNAV--DDLGKSALHWAAAV 167

Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740
            + +    LL+ GA  D  +N    PL LAA++G Y   ++ L+ + AN +   H  R  
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLP 226

Query: 741 LRV----NMKNVTKL 751
             +       ++ +L
Sbjct: 227 RDIAQERMHHDIVRL 241

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  153 bits (389), Expect = 5e-42
 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 10/176 (5%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D+  ++ LH   + +   + +  L    A DL+     G T L +AA       ++ L+ 
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           + A++N  D  G + L  A+   +     +LL++GA+ +  +    T L  AA  G  E 
Sbjct: 146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE- 204

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
                     K+LL   A+ +  D   R     +    H DIV  +       +  
Sbjct: 205 --------TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 51.3 bits (124), Expect = 5e-07
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSE 943
           +AA+EG  +  ++LL + A+   +DH  R    +A +  H + V  L  ++     
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.5 bits (114), Expect = 8e-06
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+    D  + LL   AD    D+ GR     A  +  + V ++L
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA   + D   +LL  GA+    ++       +AA+ G  ET   LL  +A+
Sbjct: 163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA+   E  +  L++  AD    D  G++A   AA   + +  + LLK  A+
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  214 bits (547), Expect = 7e-64
 Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 16/232 (6%)

Query: 389 GFVDAVQILLEAGANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA 447
                +   +  GA++ N TD  G T L  A+    S   K LL++ AD N  D  GRT 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALIASAYMGHADIVSSIL 506
           L AA       V          ++L+   A  ++A   +G T LI +A +    ++  ++
Sbjct: 62  LHAAVSADAQGV---------FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112

Query: 507 EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF 566
              AD+N  D+ G++AL  +A              +LL+ GA  D ++    TPL +AA 
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAV-----NNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167

Query: 567 EGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
           EG  +  ++LL++ A++D  D   R P   A    H   V LL  +      
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  201 bits (514), Expect = 3e-59
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 15/209 (7%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
           D+ G+TAL++AA     DA + LLEA A+ N  D  G TPL +A       V ++L+++ 
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 435 A-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           A D++     G T L  AA               +++ L+ + A VNA D  G++AL  +
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEG---------MLEDLINSHADVNAVDDLGKSALHWA 132

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A + + D    +L+  A+ + Q+N   T L ++A      +G  +   +LL+  A  D  
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDIT 187

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEAD 582
           D     P  +A    H D+  +L E    
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  194 bits (495), Expect = 1e-56
 Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 16/228 (7%)

Query: 421 GGHSAVVKLLLQSGADV-NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV 479
           G   AV+   +  GA + N +D  G TAL  AA     +           K LL A A  
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA---------AKRLLEASADA 51

Query: 480 NAADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAK 538
           N  D+ GRT L A+       +   ++   A D++ + +DG T L ++A           
Sbjct: 52  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-----AVEG 106

Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
           ++  L+   A V+  D  G + L  AA   + D   +LL+N A++D  +    TPL+ AA
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 166

Query: 599 SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
             G      +LL   A  D  D   R    +A  + + D+V  L +  
Sbjct: 167 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  189 bits (483), Expect = 4e-55
 Identities = 72/241 (29%), Positives = 105/241 (43%), Gaps = 22/241 (9%)

Query: 497 GHADIVSSILEYDADI-NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
               ++S  +   A + NQ D  G TAL ++A         +     LLE  A  + +D 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARY-----SRSDAAKRLLEASADANIQDN 56

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
            G TPL  A     + V +IL+ N A D D     G TPL  AA +     +  L+   A
Sbjct: 57  MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116

Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
            V+ +D  G++ L  AAA  N+D    LL  G      A      + D Q  +N   TPL
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG------A------NKDMQ--NNREETPL 162

Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
             AA EG  E  + LL+  A  D  D+  R P  +A +  H+ +V   L++Y    + + 
Sbjct: 163 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR-LLDEYNLVRSPQL 221

Query: 735 H 735
           H
Sbjct: 222 H 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  179 bits (457), Expect = 1e-51
 Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 21/223 (9%)

Query: 535 GYAKVVSILLEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP 593
               V+S  + +GA + ++ DR G T L +AA     D  + LLE  AD +  D  GRTP
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 594 LWAAASMGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCL 652
           L AA S        +L+   A  +D    +G T L +AA      ++  L++        
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH------ 115

Query: 653 AGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQ 712
           A        D    D+ G + LH+AA   + +    LL+ GA  D  +N    PL LAA+
Sbjct: 116 A--------DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167

Query: 713 DGHYHLVEMFLEQYEANVNQKSHDGRTALRV----NMKNVTKL 751
           +G Y   ++ L+ + AN +   H  R    +       ++ +L
Sbjct: 168 EGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRL 209

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  154 bits (393), Expect = 6e-43
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 10/178 (5%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D+  ++ LH   + +   + +  L    A DL+     G T L +AA       ++ L+ 
Sbjct: 55  DNMGRTPLHAAVSADAQGVFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           + A++N  D  G + L  A+   +     +LL++GA+ +  +    T L  AA  G  E 
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE- 172

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN 517
                     K+LL   A+ +  D   R     +    H DIV  + EY+   + Q +
Sbjct: 173 --------TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 46.6 bits (112), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+EG  +  ++LL + A+   +DH  R    +A +  H  ++RLL
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA+   E  +  L++  AD    D  G++A   AA   + +  + LLK  A+
Sbjct: 98  LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA   + D   +LL  GA+    ++       +AA+ G  ET   LL  +A+
Sbjct: 131 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADD 941
           +AA+    D  + LL   AD    D+ GR     A  +        L++  A D
Sbjct: 31  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  208 bits (531), Expect = 2e-62
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 15/184 (8%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
              +++  A QG +D ++  L  G N +N  D  G+TPL  AS  G    V+ LL+ GAD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
            +       +AL  A+ GG+ +         +V LLL     +N  D  G T L+ +   
Sbjct: 62  PHILAKERESALSLASTGGYTD---------IVGLLLERDVDINIYDWNGGTPLLYAVRG 112

Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
            H   V ++L   AD+  + + G T + ++      + GY KV  ++     K+   +  
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAV-----ALGYRKVQQVIENHILKLFQSNLV 167

Query: 557 GMTP 560
              P
Sbjct: 168 PADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  204 bits (523), Expect = 2e-61
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 15/184 (8%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGAD-VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
               +   +  G    +K  L+ G + VN  D  G T L  A+  G +E          V
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET---------V 52

Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
           + LL  GA  +    E  +AL  ++  G+ DIV  +LE D DIN  D +G T L  +   
Sbjct: 53  RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG 112

Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
                 + K V  LL +GA +  E   G TP+ +A   G+R V +++  +       +  
Sbjct: 113 -----NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167

Query: 590 GRTP 593
              P
Sbjct: 168 PADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  190 bits (486), Expect = 3e-56
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 15/184 (8%)

Query: 443 GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADI 501
           G   ++   A  G L+          +K  L  G   VN  D  G T LI ++  G  + 
Sbjct: 1   GDSLSIHQLAAQGELD---------QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET 51

Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
           V  +LE+ AD +    +  +ALS+++     + GY  +V +LLE+   ++  D  G TPL
Sbjct: 52  VRFLLEWGADPHILAKERESALSLAS-----TGGYTDIVGLLLERDVDINIYDWNGGTPL 106

Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
           L A    H    E LL   AD      SG TP+  A ++G+     ++      +   + 
Sbjct: 107 LYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166

Query: 622 EGRT 625
               
Sbjct: 167 VPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  188 bits (479), Expect = 3e-55
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 10/175 (5%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           +H+L A+  ++ LK          +   D+ G T L  A+  G ++ V+ LLE GA+ + 
Sbjct: 6   IHQLAAQGELDQLK-EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
              E  + L  AS GG++ +V LLL+   D+N  D  G T L  A  G H++        
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK-------- 116

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRT 521
             V+ LLA GA +      G T +  +  +G+  +   I  +   + Q +     
Sbjct: 117 -CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  185 bits (473), Expect = 2e-54
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 16/184 (8%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQ-DHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
               +   A +G  D  +  L    +  +  D+ G TPL  A++ G    V  LL WGA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
              +  E  + LS+A+  G  D+V  LL+R +              D    D  G TPL 
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDV--------------DINIYDWNGGTPLL 107

Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
           YA    H +   ALL  GA +    + G  P+ LA   G+  + +  +E +   + Q + 
Sbjct: 108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ-VIENHILKLFQSNL 166

Query: 736 DGRT 739
               
Sbjct: 167 VPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  175 bits (447), Expect = 8e-51
 Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 53/222 (23%)

Query: 486 GRTALIASAYMGHADIVSSILEYDAD-INQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
              ++   A  G  D +   L    + +N+ D  G T L  ++     + G  + V  LL
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-----AFGEIETVRFLL 56

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
           E GA      +E  + L +A+  G+ D+  +LLE + D +  D +G TPL  A    H  
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
           CV  LL  GA + T                                              
Sbjct: 117 CVEALLARGADLTT---------------------------------------------- 130

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
              + G+TP+  A   G+ +V + +     K+ Q +     P
Sbjct: 131 -EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  121 bits (306), Expect = 6e-32
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
               +   AAQG +D + + L +G                    D  G+TPL +A+  G 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKG-------------DNLVNKPDERGFTPLIWASAFGE 48

Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            E  R LLE GA    +  +  + L LA+  G+  +V + LE+ + ++N    +G T L
Sbjct: 49  IETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.2 bits (155), Expect = 1e-11
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           L      N++  ++  L +  A DL      G T +++A   G+    Q++      +  
Sbjct: 106 LLYAVRGNHVKCVE-ALLARGA-DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163

Query: 407 TDCEGWTP 414
           ++     P
Sbjct: 164 SNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 55.5 bits (135), Expect = 5e-09
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A +  H  CV  LL  GAD       G     +A   G+  V +++
Sbjct: 108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 51.6 bits (125), Expect = 1e-07
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            A+  G  + VR LL +GADP        +A  +A+  G+ + V  LL++  D    D  
Sbjct: 42  WASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN 101

Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
               + Y     + +  H + V  LL + AD
Sbjct: 102 GGTPLLY-----AVRGNHVKCVEALLARGAD 127

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 46.6 bits (112), Expect = 6e-06
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGAD-PKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
             A +G  D ++  L  G +     D  G      A+  G  ETV  LL+  AD
Sbjct: 8   QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  205 bits (525), Expect = 1e-61
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
               +++  A QG +  +   +E    INHTD EG+TPL  A+  G  AVV+ LLQ+GAD
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
                 G  +AL  A   G+ +         +VK+LL  G  VN  D  G T L+ + + 
Sbjct: 62  PQLLGKGRESALSLACSKGYTD---------IVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
            H   V  +LE  AD   + + G  ++ ++      + GY  V  ++     K+    +E
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAV-----ALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  197 bits (503), Expect = 1e-58
 Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 14/178 (7%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
               +   +  G    +   ++    +N +D  G T L  AA  G + V         V+
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAV---------VE 53

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
            LL  GA          +AL  +   G+ DIV  +L+   D+N+ D +G T L  +    
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV--- 110

Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
                + K V +LLE GA    E   G   + +A   G+R V +++  +        K
Sbjct: 111 --HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  182 bits (466), Expect = 2e-53
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 11/172 (6%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           +H+L A+  +  L       E   +   D+ G T L  AA  G +  V+ LL+ GA+   
Sbjct: 7   VHQLAAQGEMLYLA-TRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
                 + L  A   G++ +VK+LL  G DVN  D  G T L  A  G H++        
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK-------- 116

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
             VK+LL +GA        G  ++  +  +G+  +   I  +   + Q   +
Sbjct: 117 -CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  182 bits (465), Expect = 2e-53
 Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 15/180 (8%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
               +   A +G        +E E   +H D+ G TPL  AA+ G  + V  LL  GA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
             +     + LS+A ++G  D+V  LLD G+              D    D  G TPL Y
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGV--------------DVNEYDWNGGTPLLY 108

Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
           A    H +  + LLE+GA      + G   + LA   G+  + +  +E +   + Q   +
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ-VIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  175 bits (446), Expect = 9e-51
 Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 52/217 (23%)

Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
              ++   A  G    +++ +E +  IN  D +G T L  +A     + G   VV  LL+
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA-----AHGQIAVVEFLLQ 57

Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
            GA      +   + L +A  +G+ D+ ++LL+   D +  D +G TPL  A    H  C
Sbjct: 58  NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117

Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
           V +LL  GA                                                   
Sbjct: 118 VKMLLESGADPT-----------------------------------------------I 130

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
             + G+  +  A   G+  V + +     K+ Q   +
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  147 bits (375), Expect = 4e-41
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
           +    +   A+ G    +A  +     ++  D EG T L  AAA G I VV  LL  G  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-- 59

Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
               A        D Q       + L  A  +G+ ++ + LL+ G  V++ D +G  PL+
Sbjct: 60  ----A--------DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107

Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            A    H   V+M LE   A+   ++  G  ++
Sbjct: 108 YAVHGNHVKCVKMLLES-GADPTIETDSGYNSM 139

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.5 bits (135), Expect = 5e-09
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A    H  CV++LL  GADP      G N+  +A   G+      +      
Sbjct: 108 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.6 bits (125), Expect = 1e-07
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
             A +G    +   +       H+D  G      AA  G    V  LL+  AD
Sbjct: 9   QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA  G    V  LL  GADP+       +A  +A   G+ + V  LL    D
Sbjct: 42  WAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  206 bits (528), Expect = 3e-61
 Identities = 57/241 (23%), Positives = 92/241 (38%), Gaps = 25/241 (10%)

Query: 378 GQTALNVAAHQGFVDAVQ-ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
               L+ A  +     VQ +L    + +   D +G  PL  +       +   LL    +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 437 VNCSDMG---GRTALRAAAWGGHLEVTIVLGPLCVVKLLL--AAGAHVNAADSEGRTALI 491
           VN  D     G T    A   G+LE         VVK L        +N   ++G T L 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLE---------VVKSLYDRPLKPDLNKITNQGVTCLH 112

Query: 492 ASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG-AKV 550
            +      ++   ++E  A +  +D   +  L  +A     S G  K++ +L   G + V
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-----SVGSLKLIELLCGLGKSAV 167

Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALL 609
           + +D++G TPL  A  EGH D   +L+E   A+ D +D  G      A    +       
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224

Query: 610 L 610
           L
Sbjct: 225 L 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  190 bits (486), Expect = 2e-55
 Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANIN- 405
           LH+ C EN    ++  L S  +  L   D+ G+  L+ +      +    LL    N+N 
Sbjct: 6   LHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 406 --HTDCEGWTPLRSASWGGHSAVVKLLLQ--SGADVNCSDMGGRTALRAAAWGGHLEVTI 461
             + D  GWTP   A   G+  VVK L       D+N     G T L  A      E   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE--- 121

Query: 462 VLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY-DADINQQDNDGR 520
                 V + L+  GA V   D   +  L  +A +G   ++  +     + +N QD  G 
Sbjct: 122 ------VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175

Query: 521 TALSVSALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
           T L  +      ++G+     +L+EK GA+ D  D +G     VA    +  V +  L N
Sbjct: 176 TPLFHAL-----AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  190 bits (485), Expect = 3e-55
 Identities = 56/240 (23%), Positives = 94/240 (39%), Gaps = 25/240 (10%)

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
               L  + +     + + KV  +L  K + +  +D++G  PL  +      ++   LL 
Sbjct: 2   SNYPLHQACME----NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 579 NEAD---QDHIDKSGRTPLWAAASMGHASCVALLL--FWGAYVDTIDAEGRTVLSVAAAQ 633
              +    D+ D SG TP   A S+G+   V  L        ++ I  +G T L +A  +
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 634 GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG 693
              +V   L++ G             S+    +D     PLH AA  G  ++   L   G
Sbjct: 118 KWFEVSQFLIENG------------ASVRI--KDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 694 -AKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV-NMKNVTKL 751
            + V+  D  G  PL  A  +GH     + +E+Y A  +   + G  A  V   + V K 
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  188 bits (481), Expect = 9e-55
 Identities = 64/287 (22%), Positives = 102/287 (35%), Gaps = 68/287 (23%)

Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
               L  A                V +LL +  + +   D +GR  L  S      +I S
Sbjct: 2   SNYPLHQACMENEFFK--------VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS 53

Query: 504 SILEYDADINQQ---DNDGRTALSVSALCVPSSDGYAKVVSILLEK--GAKVDHEDREGM 558
            +L    ++N     D+ G T   ++      S G  +VV  L ++     ++    +G+
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIAC-----SVGNLEVVKSLYDRPLKPDLNKITNQGV 108

Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
           T L +A  +   +V + L+EN A     DK  + PL  AAS+G    + LL         
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL--------- 159

Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
                     +  +  N                              +D  GWTPL +A 
Sbjct: 160 --------CGLGKSAVNW-----------------------------QDKQGWTPLFHAL 182

Query: 679 IEGHEEVCRALLEA-GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
            EGH +    L+E  GA+ D VDN G     +A    +  + + FL 
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.1 bits (108), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +A  +   +  + L+  GA  +  D   +     AA  G   ++ LL
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.0 bits (100), Expect = 4e-04
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHC---GRNAFRVAAKSGHETVLRLL 935
            +      +    LL    +    D+    G   F +A   G+  V++ L
Sbjct: 42  WSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 889 IAAQEGHEDCVRLLL--HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           IA   G+ + V+ L       D     + G     +A      E    L++  A 
Sbjct: 78  IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  204 bits (521), Expect = 2e-60
 Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 20/229 (8%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
            K GQ  +  A +         L     +I +      T     +  G + ++       
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----S 63

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
             V          L  AA  G+L           ++  L     VN  D  G TAL  + 
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSW---------LRECLDNRVGVNGLDKAGSTALYWAC 114

Query: 495 YMGHADIVSS-ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           + GH DIV     + + ++NQQ+  G TAL  +A       GYA +V +LL KGA+ D  
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA-----WKGYADIVQLLLAKGARTDLR 169

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
           + E      +A       + +     +A +   +         +    H
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  191 bits (488), Expect = 9e-56
 Identities = 42/239 (17%), Positives = 72/239 (30%), Gaps = 25/239 (10%)

Query: 480 NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKV 539
                 G+  +  + Y         +   + DI    +   T           S G   +
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT-----SKGRTGL 60

Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAAS 599
           +         V  +      PL  AA  G+       L+N    + +DK+G T L+ A  
Sbjct: 61  I-----PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115

Query: 600 MGHASCVALLLF-WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQT 658
            GH   V +L       ++  +  G T L  AA +G  D+V  LL +G      A     
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG------A----- 164

Query: 659 GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
                  R+         A       + +      A     + +       +  + H+H
Sbjct: 165 ---RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  189 bits (483), Expect = 4e-55
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 22/224 (9%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           + +                 E  D+  +     T       +G    +         +  
Sbjct: 16  VFRALYTFEPRTPDELYIE-EG-DIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAE 68

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
                  PL  A+  G+ + ++  L +   VN  D  G TAL  A  GGH +        
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD-------- 120

Query: 467 CVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
            +V++L       +N  +  G TAL A+A+ G+ADIV  +L   A  + ++ + + A  +
Sbjct: 121 -IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
           +      +   A ++       A     + E       +  E H
Sbjct: 180 AT-----NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  141 bits (357), Expect = 3e-38
 Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
            K G+  ++ A           L      +  I     T      ++G   ++       
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP------ 62

Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
                        S     +      PLH AA  G+    R  L+    V+ +D  G   
Sbjct: 63  -------------SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA 109

Query: 707 LILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           L  A   GH  +VEM   Q    +NQ++  G TAL
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  136 bits (346), Expect = 1e-36
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 12/162 (7%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL- 398
                + LH+     N++ L+          +  +DK G TAL  A H G  D V++L  
Sbjct: 70  AESIDNPLHEAAKRGNLSWLR-ECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
           +    +N  +  G T L +A+W G++ +V+LLL  GA  +  ++  + A   A       
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS 187

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
                    ++K      A    +++E       S    H  
Sbjct: 188 ---------LLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AA +G+ D V+LLL  GA     +   + AF +A  +   ++L+  
Sbjct: 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AA+ G+   +R  L         D  G  A   A   GH+ ++ +L
Sbjct: 79  EAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 13/86 (15%)

Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DS 942
            A   GH+D V +L      +    +  G  A   AA  G+ + V  LL + A     + 
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171

Query: 943 EYF--VHYYYYYNSAKSGHETVLRLL 966
           E            +  +   ++L+  
Sbjct: 172 EKKLAFDM-----ATNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 9/86 (10%), Positives = 17/86 (19%), Gaps = 8/86 (9%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYF--V 946
            A           L     D  +        +      G   ++               +
Sbjct: 18  RALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPL 77

Query: 947 HYYYYYNSAKSGH-ETVLRLLKQYAD 971
           H      +AK G+   +   L     
Sbjct: 78  HE-----AAKRGNLSWLRECLDNRVG 98

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  201 bits (514), Expect = 5e-59
 Identities = 55/261 (21%), Positives = 91/261 (34%), Gaps = 32/261 (12%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
              G     +    G   +        A++     E  TP  +A+       +  LL+  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-D 67

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIAS 493
            DV+  D  GRTAL   A  G  +          V+LL  AGA ++  D   G TAL  +
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDK---------CVRLLAEAGADLDHRDMRGGLTALHMA 118

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A     ++V +++E  ADI  +D  G TAL ++                 ++ G ++  E
Sbjct: 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAR-----EILKTTPKGNPMQFGRRIGLE 173

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
               +  +L      + +V EI+ +           G+   +         C  +     
Sbjct: 174 K---VINVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHV 222

Query: 614 AYVDTIDAEGRTVLSVAAAQG 634
           A     D E    L  A A+ 
Sbjct: 223 AEDVAKDYE--DGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  196 bits (501), Expect = 2e-57
 Identities = 55/284 (19%), Positives = 86/284 (30%), Gaps = 46/284 (16%)

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
                + T  EG          GHS          ADV        T    AA     + 
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQ- 59

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-ND 518
                    +  LL     V+A D  GRTAL+  A +G    V  + E  AD++ +D   
Sbjct: 60  --------ALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
           G TAL ++A          +VV  L+E GA ++ ED  G+T L +A            ++
Sbjct: 111 GLTALHMAA-----GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 165

Query: 579 NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
                          +       +A    ++            +G+ V  +   +   D 
Sbjct: 166 FGRRIGLEKV---INVLEGQVFEYAEVDEIVE--------KRGKGKDVEYLVRWKDGGDC 214

Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
                                  ++  +D      L YA  E  
Sbjct: 215 EWVKGVHV--------------AEDVAKDYE--DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  177 bits (452), Expect = 1e-50
 Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 29/230 (12%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           V    +T    AA +    A+  LLE   +++  D  G T L   +  G    V+LL ++
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99

Query: 434 GADVNCSDM-GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
           GAD++  DM GG TAL  AA     E         VV+ L+  GA +   D  G TAL  
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPE---------VVEALVELGADIEVEDERGLTALEL 150

Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           +  +       + +++   I  +         V  +       YA+V  I+ ++G     
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEK--------VINVLEGQVFEYAEVDEIVEKRGK---- 198

Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
               G     +  ++   D   +   + A  + + K     L  A +   
Sbjct: 199 ----GKDVEYLVRWKDGGDCEWVKGVHVA--EDVAKDYEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  167 bits (425), Expect = 6e-47
 Identities = 49/180 (27%), Positives = 64/180 (35%), Gaps = 20/180 (11%)

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
           EG    L+   +GH           AD   +     TP W AA       ++ LL     
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL-EDRD 69

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRD-NCGWTPL 674
           VD +D  GRT L   A  G+   V  L + G               D  HRD   G T L
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAG--------------ADLDHRDMRGGLTAL 115

Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
           H AA     EV  AL+E GA ++  D  G   L LA +            Q+   +  + 
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG-NPMQFGRRIGLEK 174

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  160 bits (408), Expect = 9e-45
 Identities = 53/253 (20%), Positives = 77/253 (30%), Gaps = 49/253 (19%)

Query: 512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
            ++   +G     +        DG++          A V  E     TP   AA +    
Sbjct: 8   GSRTAGEGAMEYLIEW-----KDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQ 59

Query: 572 VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAE-GRTVLSVA 630
               LLE+  D D +D++GRT L   A +G   CV LL   GA +D  D   G T L +A
Sbjct: 60  ALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118

Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
           A     +VV  L++ G      A        D +  D  G T L  A            +
Sbjct: 119 AGYVRPEVVEALVELG------A--------DIEVEDERGLTALELAREILKTTPKGNPM 164

Query: 691 EAGAKVDQV----------------------DNDGRAPLILAAQDGHYHLVEMFLEQYEA 728
           + G ++                            G+    L                + A
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEW-VKGVHVA 223

Query: 729 NVNQKSHDGRTAL 741
               K  D    L
Sbjct: 224 EDVAK--DYEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  154 bits (392), Expect = 2e-42
 Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 31/231 (13%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
            S+ ++       + +   L   L+     D++ VD++G+TAL   A  G    V++L E
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDR---DVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 400 AGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
           AGA+++H D   G T L  A+      VV+ L++ GAD+   D  G TAL  A       
Sbjct: 99  AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDND 518
                         +  G  +          ++      +A++         +I ++   
Sbjct: 159 ---------PKGNPMQFGRRIGLEKV---INVLEGQVFEYAEV--------DEIVEKRGK 198

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
           G+    +                +     A+   +D E    L  A  E  
Sbjct: 199 GKDVEYLVRW-----KDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.0 bits (193), Expect = 5e-16
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716
           +   +        G         +GH           A    V ++   P   AA+    
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 58

Query: 717 HLVEMFLEQYEANVNQKSHDGRTAL 741
             +   LE    +V+    +GRTAL
Sbjct: 59  QALSQLLED--RDVDAVDENGRTAL 81

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSEYFVH 947
           +AA     + V  L+  GAD +  D  G  A  +A +    T      Q+        V 
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 176

Query: 948 YYYYYNSAKSGHETVLRLLKQYADD 972
                      +  V  ++++    
Sbjct: 177 NVLEGQVF--EYAEVDEIVEKRGKG 199

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGHETVLRLL 935
             A  G + CVRLL   GAD  H D   G  A  +AA      V+  L
Sbjct: 83  FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
           I  ++GH        +  AD           +  AA+   E  L  L +  D
Sbjct: 21  IEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRD 69

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  200 bits (511), Expect = 6e-59
 Identities = 50/222 (22%), Positives = 79/222 (35%), Gaps = 17/222 (7%)

Query: 394 VQILLEAGANINHTD---CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450
           ++ +L    +              L  A+  G   VV+  ++   D +  +  G TAL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA 510
           A  G +           +V  L+ AGA+VN+ DS G T L  +A      I  +++++ A
Sbjct: 61  AICGANYS---------IVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

Query: 511 DINQQD-NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
            I     +DG TA      C P  +GYA   + L +    +   +   +  L   + E  
Sbjct: 112 AIFATTLSDGATAFE---KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG 168

Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
            D               D    T  W AA  G    V    F
Sbjct: 169 -DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  180 bits (459), Expect = 9e-52
 Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 18/198 (9%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
               L  AA  G ++ VQ  ++   + +  + EG T L +A  G + ++V  L+ +GA+V
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTAL-IASAY 495
           N  D  G T L  AA               +   L+  GA + A   S+G TA      Y
Sbjct: 81  NSPDSHGWTPLHCAASCNDTV---------ICMALVQHGAAIFATTLSDGATAFEKCDPY 131

Query: 496 M-GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
             G+AD  + + + +  +   ++    AL         S  +   +S    +   V   D
Sbjct: 132 REGYADCATYLADVEQSMGLMNSGAVYAL------WDYSAEFGDELSFREGESVTVLRRD 185

Query: 555 REGMTPLLVAAFEGHRDV 572
               T    AA  G    
Sbjct: 186 GPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  157 bits (399), Expect = 1e-43
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 540 VSILLEKGAKVDHEDRE---GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWA 596
           +  +L K        R     +  LL AA  G  +V +  ++   D    ++ G T L  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 597 AASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656
           A    + S V  L+  GA V++ D+ G T L  AA+  +  +   L+  G          
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG---------- 110

Query: 657 QTGSLDEQHRDNCGWTPLHYAAI--EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG 714
              ++      + G T         EG+ +    L +    +  +++     L   + + 
Sbjct: 111 --AAIFATT-LSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167

Query: 715 HYHLVEMFLEQYEANVNQKSHDGRTAL 741
              L   F E     V ++     T  
Sbjct: 168 GDEL--SFREGESVTVLRRDGPEETDW 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  155 bits (394), Expect = 5e-43
 Identities = 41/241 (17%), Positives = 69/241 (28%), Gaps = 20/241 (8%)

Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
           + S+L       +        L    L   +  G  +VV   +++       + EG+T L
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLV--LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58

Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
             A    +  + + L+   A+ +  D  G TPL  AAS         L+  GA +     
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

Query: 622 -EGRTVLSVAAA--QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
            +G T         +G  D    L D                      ++     L   +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQ--------------SMGLMNSGAVYALWDYS 164

Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR 738
            E  +E+          V + D         AA  G    V          V  +    +
Sbjct: 165 AEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVK 223

Query: 739 T 739
            
Sbjct: 224 H 224

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  121 bits (307), Expect = 2e-31
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 16/179 (8%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH      N +++  FL +  A ++   D HG T L+ AA          L++ GA I  
Sbjct: 58  LHNAICGANYSIVD-FLITAGA-NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115

Query: 407 TD-CEGWTPLRSASWG--GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           T   +G T          G++     L      +   + G   AL   +     E+    
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL---- 171

Query: 464 GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV-SSILEYDADINQQDNDGRT 521
                          V   D    T    +A  G    V  +       +  Q +  + 
Sbjct: 172 ------SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKH 224

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 5/83 (6%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            A    +   V  L+  GA+    D  G      AA        + L++  A        
Sbjct: 60  NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

Query: 944 YFVHYYYYYNSAKSGHETVLRLL 966
                +   +  + G+      L
Sbjct: 120 DGATAFEKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA  G  + V+  +    DP   +  G  A   A    +   V  L+   A+
Sbjct: 27  DAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 6/51 (11%), Positives = 13/51 (25%)

Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
             +EG+ DC   L          +     A    +    + +     +   
Sbjct: 130 PYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVT 180

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  192 bits (490), Expect = 7e-56
 Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 26/238 (10%)

Query: 374 VDKHGQTALNVAAHQG----FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
           + + G + L++A         ++ ++ +    A +N  +    TPL  A       + + 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA------HVNAAD 483
           LL +G D    D  G T L  A   G L           V +L  +         + A +
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLA---------SVGVLTQSCTTPHLHSILKATN 114

Query: 484 SEGRTALIASAYMGHADIVSSILEYDADINQQDN-DGRTALSVSALCVPSSDGYAKVVSI 542
             G T L  ++  G+  IV  ++   AD+N Q+  +GRTAL ++            +VS+
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL-----QNPDLVSL 169

Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL-WAAAS 599
           LL+ GA V+    +G +P  +        + + L +   +   +         +   S
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  176 bits (449), Expect = 3e-50
 Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 21/212 (9%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
            L   +   QT L++A      +  + LL AG +    D  G TPL  A   G  A V +
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96

Query: 430 LLQSGAD------VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD 483
           L QS         +  ++  G T L  A+  G+L          +V+LL++ GA VNA +
Sbjct: 97  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG---------IVELLVSLGADVNAQE 147

Query: 484 -SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSI 542
              GRTAL  +  + + D+VS +L+  AD+N+    G +   ++           ++   
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW-----GRPSTRIQQQ 202

Query: 543 LLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
           L +   +      E              +  E
Sbjct: 203 LGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  176 bits (448), Expect = 3e-50
 Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 30/251 (11%)

Query: 481 AADSEGRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSDGY 536
               +G + L  +       +   ++       A +N Q+N  +T L ++ +        
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-----NQ 57

Query: 537 AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI------DKSG 590
            ++   LL  G   +  D  G TPL +A  +G      +L ++             + +G
Sbjct: 58  PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTID-AEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
            T L  A+  G+   V LL+  GA V+  +   GRT L +A    N D+V+ LL  G   
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG--- 174

Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709
              A       ++       G++P           + + L +   +  Q+  +       
Sbjct: 175 ---A------DVNRV--TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223

Query: 710 AAQDGHYHLVE 720
             +       E
Sbjct: 224 DTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  173 bits (442), Expect = 2e-49
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 21/234 (8%)

Query: 514 QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC 573
           Q   DG + L ++ +         +V+  +    A ++ ++    TPL +A      ++ 
Sbjct: 3   QLTEDGDSFLHLAIIH-EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA------YVDTIDAEGRTVL 627
           E LL    D +  D  G TPL  A   G  + V +L            +   +  G T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 628 SVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687
            +A+  G + +V  L+  G      A       ++ Q   N G T LH A    + ++  
Sbjct: 122 HLASIHGYLGIVELLVSLG------A------DVNAQEPCN-GRTALHLAVDLQNPDLVS 168

Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            LL+ GA V++V   G +P  L        + +  L Q      Q   +     
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ-QLGQLTLENLQMLPESEDEE 221

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  117 bits (296), Expect = 8e-30
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 26/170 (15%)

Query: 583 QDHIDKSGRTPLWAAASMGHAS----CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV 638
           +  + + G + L  A      +     +  +    A+++  +   +T L +A      ++
Sbjct: 1   KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60

Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA---- 694
              LL  G               +   RD  G TPLH A  +G       L ++      
Sbjct: 61  AEALLGAG------------CDPEL--RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106

Query: 695 --KVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK-SHDGRTAL 741
              +   + +G   L LA+  G+  +VE+ +    A+VN +   +GRTAL
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILLEAGANIN 405
           LH       + +++  L S  A D+   +  +G+TAL++A      D V +LL+ GA++N
Sbjct: 121 LHLASIHGYLGIVE-LLVSLGA-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178

Query: 406 HTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
               +G++P +       + + + L Q   +                     E T
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +A      +    LL  G DP+  D  G     +A + G    + +L
Sbjct: 51  LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSE 943
           +A    + D V LLL  GAD     + G + +++        + + L Q   ++ +
Sbjct: 157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHC-GRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A+  G+   V LL+  GAD    + C GR A  +A    + + V  LLK  AD
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  192 bits (489), Expect = 8e-56
 Identities = 46/305 (15%), Positives = 84/305 (27%), Gaps = 79/305 (25%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
           +  GQ +L               +  G  +          L  +S  G   +V+ ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
            D +  +  G TAL  A   GH E+         VK L+  G +VNAADS+G T L  +A
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEI---------VKFLVQFGVNVNAADSDGWTPLHCAA 111

Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
              +  +   ++E  A +                                         D
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYS-----------------------------------D 136

Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
            +          EG+    + L   +     ++K     LW                   
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD----------- 185

Query: 615 YVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPL 674
            +   + +  T++     + + D +     R                     D  G+ P 
Sbjct: 186 ELPMKEGDCMTII----HREDEDEIEWWWARL-------------------NDKEGYVPR 222

Query: 675 HYAAI 679
           +   +
Sbjct: 223 NLLGL 227

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  165 bits (421), Expect = 1e-46
 Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 21/227 (9%)

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
           +  G+ +L              K  S  +  G +V   +   +  LL ++ EG  D+ + 
Sbjct: 2   EITGQVSLPPGK-----RTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQR 55

Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
           ++    D    +  G T L  A   GH   V  L+ +G  V+  D++G T L  AA+  N
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115

Query: 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQ-HRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
           + V   L++ G             ++    + D            EG+ +  + L     
Sbjct: 116 VQVCKFLVESG------------AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 695 KVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           K+  ++      L          L     E     +  +  +     
Sbjct: 164 KMGIMNKGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEIEW 208

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  161 bits (409), Expect = 7e-45
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 25/235 (10%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           +   Q  L      N          +     ++  +      L  ++ +G  D VQ ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGS-ERIAHGM-RVK-FNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
              + +  + EG T L +A   GH+ +VK L+Q G +VN +D  G T L  AA   +++ 
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ- 117

Query: 460 TIVLGPLCVVKLLLAAGAHVNAA---DSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
                   V K L+ +GA V A    D +           G+      +      +   +
Sbjct: 118 --------VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169

Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAK--VDHEDREGMTPLLVAAFEGH 569
                AL                  + +++G    + H + E       A     
Sbjct: 170 KGVIYALWDYE--------PQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  158 bits (402), Expect = 5e-44
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 19/197 (9%)

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
           +  G   L        R      + +       +      L  ++  G    V  +++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
                 + EG T L  A   G+ ++V  L+  G+              +    D+ GWTP
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV--------------NVNAADSDGWTP 106

Query: 674 LHYAAIEGHEEVCRALLEAGAKV---DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
           LH AA   + +VC+ L+E+GA V      D    A      ++G+    + FL   +  +
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ-FLYGVQEKM 165

Query: 731 NQKSHDGRTALRVNMKN 747
              +     AL      
Sbjct: 166 GIMNKGVIYALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 6/89 (6%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
            A   GH + V+ L+ +G +   +D  G      AA   + +    L++  A        
Sbjct: 76  NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135

Query: 944 YFVHYYYYYNSAKSGH-ETVLRLLKQYAD 971
                       + G+ +    L      
Sbjct: 136 DMQTAADKCEEMEEGYTQCSQFLYGVQEK 164

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            ++ EG  D V+ +++   DP   +  G  A   A  +GH E V  L++   +
Sbjct: 43  DSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
              +          + +G   K +          ++  G  + V R++ +  D
Sbjct: 11  PGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDD 62

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  187 bits (477), Expect = 8e-55
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 21/196 (10%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
                  +     +G   AV++ L+   N +N  D  G++PL  A   G SAVV++L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA +N  + G  T L  AA  GH +         +V+ LL   A +NA +  G   L  +
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRD---------IVQKLLQYKADINAVNEHGNVPLHYA 112

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
            + G   +   ++   A ++  +  G   +  +      +     +     + G  ++  
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK-----APLRELLRERAEKMGQNLNR- 166

Query: 554 DREGMTPLLVAAFEGH 569
                 P     ++G 
Sbjct: 167 -----IPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  164 bits (417), Expect = 9e-47
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 16/181 (8%)

Query: 554 DREGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
             E M  +     EG+     + L+N E D +  D  G +PL  A   G ++ V +L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
           GA ++ ++    T L +AA+ G+ D+V +LL                 ++    +  G  
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA------------DINA--VNEHGNV 107

Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
           PLHYA   G ++V   L+  GA V   +  G  P+  A       L E   E+   N+N+
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE-RAEKMGQNLNR 166

Query: 733 K 733
            
Sbjct: 167 I 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  162 bits (413), Expect = 3e-46
 Identities = 49/212 (23%), Positives = 72/212 (33%), Gaps = 48/212 (22%)

Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCV 468
           E    + +    G++  V+L L +   D+N  D  G + L  A   G   V         
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV--------- 54

Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL 528
           V++L+  GA +N  +    T L  +A  GH DIV  +L+Y ADIN  +  G   L     
Sbjct: 55  VEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL----- 109

Query: 529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK 588
                                  H           A F G   V E L+ N A     +K
Sbjct: 110 -----------------------H----------YACFWGQDQVAEDLVANGALVSICNK 136

Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
            G  P+  A +             G  ++ I 
Sbjct: 137 YGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  160 bits (408), Expect = 2e-45
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 10/170 (5%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           +   C E N   ++ +L      DL   D HG + L+ A  +G    V++L+  GA IN 
Sbjct: 9   IFTQCREGNAVAVRLWL-DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            +    TPL  A+  GH  +V+ LLQ  AD+N  +  G   L  A + G  +        
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ-------- 119

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD 516
            V + L+A GA V+  +  G   +  +       +     +   ++N+  
Sbjct: 120 -VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  152 bits (387), Expect = 1e-42
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 59/235 (25%)

Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVV 540
              E    +      G+A  V   L+    D+NQ D+ G + L  +       +G + VV
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC-----REGRSAVV 55

Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600
            +L+ +GA+++  +R   TPL +AA  GHRD+ + LL+ +AD + +++ G  PL  A   
Sbjct: 56  EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW 115

Query: 601 GHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGS 660
           G       L+  GA V                                            
Sbjct: 116 GQDQVAEDLVANGALVSI------------------------------------------ 133

Query: 661 LDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
                 +  G  P+  A     E +     + G  ++++      P       G 
Sbjct: 134 -----CNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI------PYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.1 bits (134), Expect = 8e-09
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH  C      + +  L +  A  + + +K+G+  ++ A         +   + G N+N 
Sbjct: 109 LHYACFWGQDQVAE-DLVANGA-LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166

Query: 407 TDCEGWTPLRSASWGGHS 424
                  P +   W G +
Sbjct: 167 I------PYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
             +    +    ++G+   V ++L+  E ++NQ    G + L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL 43

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 8/47 (17%), Positives = 12/47 (25%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A   G +     L+  GA     +  G      A     E +    
Sbjct: 111 YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.0 bits (113), Expect = 5e-06
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA  GH D V+ LL Y AD    +  G      A   G  +    L+   A 
Sbjct: 78  LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A +EG    V +L+  GA     +        +AA  GH + V +LL+  AD
Sbjct: 45  WACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.5 bits (96), Expect = 8e-04
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
              +EG+   VRL L     D    D  G +    A + G    V  L+ + A 
Sbjct: 11  TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  185 bits (470), Expect = 2e-53
 Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 16/240 (6%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
                N+A      +  + +L   +    TD +  T L  A   GH+ +V+ LLQ G  V
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
           N  D  G + L  AA  G  E         +VK LL  GAHVNA +  G T L  +A   
Sbjct: 67  NDKDDAGWSPLHIAASAGXDE---------IVKALLVKGAHVNAVNQNGCTPLHYAASKN 117

Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
             +I   +LE  A+ + +D+   TA+  +A     + G  K+V ILL   A  + +D EG
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAA-----AKGNLKMVHILLFYKASTNIQDTEG 172

Query: 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD 617
            TPL +A  E   +  + L+   A     +K  +TPL  A   G    +   L  G    
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  183 bits (465), Expect = 1e-52
 Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 16/236 (6%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
                  A  G    + + +L   +    +D   RTAL  A   GH E+         V+
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEI---------VE 57

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
            LL  G  VN  D  G + L  +A  G  +IV ++L   A +N  + +G T L  +A   
Sbjct: 58  FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA--- 114

Query: 531 PSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSG 590
             S    ++  +LLE GA  D +D    T +  AA +G+  +  ILL  +A  +  D  G
Sbjct: 115 --SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172

Query: 591 RTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
            TPL  A           L+  GA +   + E +T L VA   G + ++ + L  G
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEG 226

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  177 bits (450), Expect = 1e-50
 Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 30/256 (11%)

Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
           +        A  G   E         + + +LA  +     D + RTAL  +   GH +I
Sbjct: 5   VSNIMICNLAYSGKLDE---------LKERILADKSLATRTDQDSRTALHWACSAGHTEI 55

Query: 502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPL 561
           V  +L+    +N +D+ G + L ++A     S G  ++V  LL KGA V+  ++ G TPL
Sbjct: 56  VEFLLQLGVPVNDKDDAGWSPLHIAA-----SAGXDEIVKALLVKGAHVNAVNQNGCTPL 110

Query: 562 LVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA 621
             AA +   ++  +LLE  A+ D  D    T +  AA+ G+   V +LLF+ A  +  D 
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170

Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
           EG T L +A  +  ++    L+ +G                    +    TPL  A   G
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGA--------------SIYIENKEEKTPLQVAK--G 214

Query: 682 HEEVCRALLEAGAKVD 697
              +    L  G +  
Sbjct: 215 GLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  169 bits (429), Expect = 8e-48
 Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 18/240 (7%)

Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA 402
           N  + + L     ++ LK  + + ++      D+  +TAL+ A   G  + V+ LL+ G 
Sbjct: 7   NIMICN-LAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
            +N  D  GW+PL  A+  G   +VK LL  GA VN  +  G T L  AA     E    
Sbjct: 65  PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE---- 120

Query: 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTA 522
                +  +LL  GA+ +A D    TA+  +A  G+  +V  +L Y A  N QD +G T 
Sbjct: 121 -----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP 175

Query: 523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
           L ++       +   +    L+ +GA +  E++E  TPL VA   G   +    L    +
Sbjct: 176 LHLAC-----DEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  157 bits (399), Expect = 8e-44
 Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 22/237 (9%)

Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
                  +++      S    ++   +L   +     D++  T L  A   GH ++ E L
Sbjct: 5   VSNIMICNLAY-----SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59

Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
           L+     +  D +G +PL  AAS G    V  LL  GA+V+ ++  G T L  AA++   
Sbjct: 60  LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
           ++   LL+ G               +   +D+   T +H AA +G+ ++   LL   A  
Sbjct: 120 EIAVMLLEGGA--------------NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165

Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV--NMKNVTKL 751
           +  D +G  PL LA  +      +  + Q  A++  ++ + +T L+V      +   
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLGLILK 221

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  134 bits (338), Expect = 1e-35
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 15/201 (7%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
            +    +A      ++ E +L +++     D+  RT L  A S GH   V  LL  G  V
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
           +  D  G + L +AA+ G  ++V  LL +G                    +  G TPLHY
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGA--------------HVNAVNQNGCTPLHY 112

Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD 736
           AA +   E+   LLE GA  D  D+     +  AA  G+  +V + L   +A+ N +  +
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTE 171

Query: 737 GRTALRVNMKNVTKLSFWYLL 757
           G T L +           +L+
Sbjct: 172 GNTPLHLACDEERVEEAKFLV 192

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (279), Expect = 1e-27
 Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 15/169 (8%)

Query: 589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
           S       A S         +L   +     D + RT L  A + G+ ++V  LL  G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-- 63

Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
                            +D+ GW+PLH AA  G +E+ +ALL  GA V+ V+ +G  PL 
Sbjct: 64  ----V--------PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLH 111

Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLL 757
            AA    + +  M LE   AN + K H   TA+              LL
Sbjct: 112 YAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
            A   GH + V  LL  G      D  G +   +AA +G + +++ L             
Sbjct: 46  WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

Query: 949 YY--YYNSAKSGHETVLRLLKQYADDI 973
                + +A      +  +L +   + 
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANP 132

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A     ++    +L   +    +D   R A   A  +GH E V  LL+    
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  181 bits (461), Expect = 2e-52
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 20/208 (9%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           +DK+G+    +   +     +  L       N+ D    TPL  A   G    +  L+++
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
              +   D+ G TAL  A     L          + + LL+ G++VN  D  G+T L+ S
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLG---------IAEKLLSKGSNVNTKDFSGKTPLMWS 108

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
              G++++   +LE+ A++N ++ +G T L V++       G +++V  LLE GA +   
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY-----GRSEIVKKLLELGADISAR 163

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEA 581
           D  G+T    A   G ++V +I  E   
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  172 bits (440), Expect = 1e-49
 Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 22/206 (10%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D   + V   +  E +IN    FL+          D + +T L VA   G  +A+  L+E
Sbjct: 5   DKNGEIVEK-IKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
               +   D EG T L  A       + + LL  G++VN  D  G+T L  +   G+ E+
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                       LL  GA+VN  + EG T LI ++  G ++IV  +LE  ADI+ +D  G
Sbjct: 117 ---------SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167

Query: 520 RTALSVSALCVPSSDGYAKVVSILLE 545
            TA + +        G  +V+ I  E
Sbjct: 168 LTAEASAR-----IFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  154 bits (391), Expect = 5e-43
 Identities = 51/212 (24%), Positives = 79/212 (37%), Gaps = 25/212 (11%)

Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
           +  D +G     +            + +  L     +    D    TPL+VA   G  + 
Sbjct: 2   SHMDKNGEIVEKIKDEK-----SINQNLDFLRN--YR----DSYNRTPLMVACMLGMENA 50

Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAA 632
            + L+EN    +  D  G T L  A           LL  G+ V+T D  G+T L  +  
Sbjct: 51  IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110

Query: 633 QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
            G  ++   LL+ G      A        +   R+  G TPL  A+  G  E+ + LLE 
Sbjct: 111 FGYSEMSYFLLEHG------A--------NVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156

Query: 693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
           GA +   D  G      A   G   ++++F E
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  153 bits (389), Expect = 9e-43
 Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 476 GAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535
           G+H+   D  G               +      D   N +D+  RT L V+ +      G
Sbjct: 1   GSHM---DKNGEIVEKIKDEKSINQNL------DFLRNYRDSYNRTPLMVACML-----G 46

Query: 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLW 595
               +  L+E   K++ +D EG T L+ A       + E LL   ++ +  D SG+TPL 
Sbjct: 47  MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106

Query: 596 AAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGG 655
            +   G++     LL  GA V+  + EG T L VA+  G  ++V +LL+ G      A  
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG------A-- 158

Query: 656 RQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
                 D   RD  G T    A I G +EV +   E   
Sbjct: 159 ------DISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  142 bits (361), Expect = 5e-39
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 21/190 (11%)

Query: 552 HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
           H D+ G     +   +      + L        + D   RTPL  A  +G  + +  L+ 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671
               ++  D EG T L  A     + +  +LL +G               +   +D  G 
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS--------------NVNTKDFSGK 102

Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
           TPL ++ I G+ E+   LLE GA V+  + +G  PLI+A++ G   +V+  LE   A+++
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADIS 161

Query: 732 QKSHDGRTAL 741
            +   G TA 
Sbjct: 162 ARDLTGLTAE 171

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +A++ G  + V+ LL  GAD    D  G  A   A   G + V+++ 
Sbjct: 140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A   G E+ +  L+      +  D  G  A   A K+       +LL + ++
Sbjct: 41  VACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A +         LL  G++    D  G+     +   G+ E    LL+  A+
Sbjct: 74  WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.8 bits (97), Expect = 7e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            +   G+ +    LL +GA+    +  G     VA+K G   +++ L
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  179 bits (458), Expect = 2e-52
 Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 15/179 (8%)

Query: 401 GANINH-TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           G++ +H    +    L  A+  G    V++L+ +GADVN  D  G T L  AA+ GHLE 
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE- 61

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                   +V++LL  GA VNA D  G T L  +A  GH +IV  +L+  AD+N  D +G
Sbjct: 62  --------IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
            T L ++A+      G+ ++V +LL+ GA V+ +D+ G T   ++   G+ D+ EIL +
Sbjct: 114 HTPLHLAAMF-----GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  173 bits (442), Expect = 3e-50
 Identities = 70/169 (41%), Positives = 94/169 (55%), Gaps = 14/169 (8%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
               L  AA  G  D V+IL+  GA++N  D  GWTPL  A++ GH  +V++LL++GADV
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
           N  D  G T LR AA  GHLE         +V++LL  GA VNA D EG T L  +A  G
Sbjct: 74  NAVDHAGMTPLRLAALFGHLE---------IVEVLLKNGADVNANDMEGHTPLHLAAMFG 124

Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546
           H +IV  +L+  AD+N QD  G+TA  +S       +G   +  IL + 
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISI-----DNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  154 bits (393), Expect = 1e-43
 Identities = 63/180 (35%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 546 KGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
           +G+   H    +    LL AA  G  D   IL+ N AD +  D SG TPL  AA  GH  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
            V +LL  GA V+ +D  G T L +AA  G++++V  LL  G      A        D  
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG------A--------DVN 107

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
             D  G TPLH AA+ GH E+   LL+ GA V+  D  G+    ++  +G+  L E+  +
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  150 bits (383), Expect = 3e-42
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 11/163 (6%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           L +       + ++  L +  A D+   D  G T L++AA  G ++ V++LL+ GA++N 
Sbjct: 18  LLEAARAGRDDEVR-ILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            D  G TPLR A+  GH  +V++LL++GADVN +DM G T L  AA  GHLE        
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE-------- 127

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD 509
            +V++LL  GA VNA D  G+TA   S   G+ D+   + + +
Sbjct: 128 -IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  148 bits (376), Expect = 3e-41
 Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 20/183 (10%)

Query: 510 ADIN-QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG 568
           +  +    +D    L  +A       G    V IL+  GA V+ ED  G TPL +AAF G
Sbjct: 4   SHHHHHHGSDLGKKLLEAARA-----GRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58

Query: 569 HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
           H ++ E+LL+N AD + +D +G TPL  AA  GH   V +LL  GA V+  D EG T L 
Sbjct: 59  HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118

Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
           +AA  G++++V  LL  G      A        D   +D  G T    +   G+E++   
Sbjct: 119 LAAMFGHLEIVEVLLKNG------A--------DVNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 689 LLE 691
           L +
Sbjct: 165 LQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  109 bits (275), Expect = 1e-27
 Identities = 46/122 (37%), Positives = 58/122 (47%), Gaps = 15/122 (12%)

Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
            ++    L  AA  G  D V  L+  G      A        D    D  GWTPLH AA 
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANG------A--------DVNAEDASGWTPLHLAAF 56

Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
            GH E+   LL+ GA V+ VD+ G  PL LAA  GH  +VE+ L+   A+VN    +G T
Sbjct: 57  NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHT 115

Query: 740 AL 741
            L
Sbjct: 116 PL 117

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.7 bits (115), Expect = 3e-06
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA  GH + V +LL  GAD    D  G+ AF ++  +G+E +  +L
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.8 bits (110), Expect = 1e-05
 Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA  GH + V +LL  GAD    DH G    R+AA  GH E V  LLK  AD
Sbjct: 53  LAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.4 bits (109), Expect = 1e-05
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA+ G +D VR+L+  GAD    D  G     +AA +GH E V  LLK  AD
Sbjct: 20  EAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.0 bits (108), Expect = 2e-05
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA  GH + V +LL  GAD   +D  G     +AA  GH E V  LLK  AD
Sbjct: 86  LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  176 bits (449), Expect = 5e-51
 Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 19/182 (10%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
               G     +    G   +        A++     E  TP  +A+       +  LL  
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-E 65

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIA 492
             DV+  D  GRTAL   A  G  +          V+LL  AGA ++  D   G TAL  
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDK---------CVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           +A     ++V +++E  ADI  +D  G TAL ++                 ++ G ++  
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-----LKTTPKGNPMQFGRRIGL 171

Query: 553 ED 554
           E 
Sbjct: 172 EK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  170 bits (434), Expect = 5e-49
 Identities = 46/188 (24%), Positives = 66/188 (35%), Gaps = 19/188 (10%)

Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
               + T  EG          GHS          ADV        T    AA     +  
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA- 59

Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-NDG 519
                   +  LL     V+A D  GRTAL+  A +G    V  + E  AD++ +D   G
Sbjct: 60  --------LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
            TAL ++A          +VV  L+E GA ++ ED  G+T L +A            ++ 
Sbjct: 111 LTALHMAAGY-----VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

Query: 580 EADQDHID 587
                   
Sbjct: 166 GRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  168 bits (429), Expect = 3e-48
 Identities = 48/180 (26%), Positives = 65/180 (36%), Gaps = 20/180 (11%)

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
           EG    L+   +GH           AD   +     TP W AA       ++ LL     
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL-EDRD 68

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRD-NCGWTPL 674
           VD +D  GRT L   A  G+   V  L + G               D  HRD   G T L
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAG--------------ADLDHRDMRGGLTAL 114

Query: 675 HYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS 734
           H AA     EV  AL+E GA ++  D  G   L LA +          ++ +   +  + 
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ-FGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  143 bits (362), Expect = 3e-39
 Identities = 47/218 (21%), Positives = 65/218 (29%), Gaps = 41/218 (18%)

Query: 476 GAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535
               +    EG    +     GH+          AD+    ++  T    +A        
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA-----RKA 55

Query: 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHID-KSGRTPL 594
             + +S LLE    VD  D  G T LL  A  G      +L E  AD DH D + G T L
Sbjct: 56  DEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 114

Query: 595 WAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG 654
             AA       V  L+  GA ++  D  G T L +A                        
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG-------------- 160

Query: 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA 692
                             P+ +    G E+V   L   
Sbjct: 161 -----------------NPMQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  129 bits (327), Expect = 1e-34
 Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
              G          GH+       +  A    + +E  T    AA + +   ++QLL+  
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKADEQALSQLLEDR 67

Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-NDGRA 705
                          D    D  G T L + A  G ++  R L EAGA +D  D   G  
Sbjct: 68  ---------------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112

Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            L +AA      +VE  +E   A++  +   G TAL
Sbjct: 113 ALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTAL 147

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (313), Expect = 1e-32
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
            S+ ++       + +   L   L+     D++ VD++G+TAL   A  G    V++L E
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDR---DVDAVDENGRTALLFVAGLGSDKCVRLLAE 97

Query: 400 AGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
           AGA+++H D   G T L  A+      VV+ L++ GAD+   D  G TAL  A       
Sbjct: 98  AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 157

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAAD 483
                         +  G  +    
Sbjct: 158 ---------PKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.8 bits (203), Expect = 5e-18
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
            + G TAL++AA     + V+ L+E GA+I   D  G T L  A     +      +Q G
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

Query: 435 ADVNCSDM 442
             +    +
Sbjct: 167 RRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 15/78 (19%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
           +AA     + V  L+  GAD +  D  G  A  +A +    T      Q+          
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG--------- 166

Query: 949 YYYYNSAKSGHETVLRLL 966
                  + G E V+ +L
Sbjct: 167 ------RRIGLEKVINVL 178

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSD-HCGRNAFRVAAKSGHETVLRLL 935
             A  G + CVRLL   GAD  H D   G  A  +AA      V+  L
Sbjct: 82  FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
           I  ++GH        +  AD           +  AA+   E  L  L +  D
Sbjct: 20  IEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLEDRD 68

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  171 bits (436), Expect = 1e-49
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 398 LEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL 457
           +E  A  +         L +A+  G    V+ LL++GA+ N  +  GR  ++     G  
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 458 EVTIVLGPLCVVKLLLAAGAHVNAADSEGRT-ALIASAYMGHADIVSSILEYDADINQQD 516
                     V +LLL  GA  N AD    T  +  +A  G  D +  +    A ++ +D
Sbjct: 58  R---------VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108

Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
             GR  + ++        G+  V   L             G     + A EG  D+ +
Sbjct: 109 AWGRLPVDLAE-----ELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  168 bits (427), Expect = 2e-48
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
            +     L  AA +G V+ V+ LLEAGAN N  +  G  P++    G  + V +LLL  G
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHG 67

Query: 435 ADVNCSDMGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           A+ NC+D    T  +  AA  G L+          + +L  AGA ++  D+ GR  +  +
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDT---------LVVLHRAGARLDVRDAWGRLPVDLA 118

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTAL 523
             +GH D+   +          ++    A 
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  155 bits (395), Expect = 4e-44
 Identities = 44/178 (24%), Positives = 63/178 (35%), Gaps = 23/178 (12%)

Query: 544 LEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA 603
           +E  A    E       L  AA  G  +    LLE  A+ +  +  GR P+     MG A
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 604 SCVALLLFWGAYVDTIDAEGRTV-LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
               LLL  GA  +  D    T  +  AA +G +D +  L   G      A         
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG------A--------R 103

Query: 663 EQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE 720
              RD  G  P+  A   GH +V R L  A       ++       + A +G   + +
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR-----IDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  155 bits (394), Expect = 6e-44
 Identities = 47/209 (22%), Positives = 66/209 (31%), Gaps = 54/209 (25%)

Query: 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490
           ++  A  +         L  AA  G +E          V+ LL AGA+ NA +S GR  +
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEE---------VRALLEAGANPNAPNSYGRRPI 49

Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV 550
                MG A +   +L + A+ N  D    T                             
Sbjct: 50  QV-MMMGSARVAELLLLHGAEPNCADPATLT----------------------------- 79

Query: 551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
                    P+  AA EG  D   +L    A  D  D  GR P+  A  +GH      L 
Sbjct: 80  --------RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131

Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
                       G     + AA+G  D+ 
Sbjct: 132 AAAG-----GTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  136 bits (345), Expect = 2e-37
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 18/157 (11%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           L    A   +  ++  L    A +    + +G+  + V    G     ++LL  GA  N 
Sbjct: 16  LATAAARGRVEEVR-ALLEAGA-NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC 72

Query: 407 TDCEGWT-PLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
            D    T P+  A+  G    + +L ++GA ++  D  GR  +  A   GH +       
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD------- 125

Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
             V + L AA      ++     A       G +DI 
Sbjct: 126 --VARYLRAAAGGTRGSNHARIDAA-----EGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AA+EG  D + +L   GA     D  GR    +A + GH  V R L
Sbjct: 84  DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD----DSEY 944
            AA  G  + VR LL  GA+P   +  GR   +V           LL   A+    D   
Sbjct: 18  TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPAT 77

Query: 945 F---VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
               VH      +A+ G  +T++ L +  A 
Sbjct: 78  LTRPVHD-----AAREGFLDTLVVLHRAGAR 103

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 5/43 (11%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETV 931
           +A + GH D  R L       +     G N  R+ A  G   +
Sbjct: 117 LAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDI 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  171 bits (435), Expect = 2e-49
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 17/169 (10%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQS-GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
               L  A+  G    V+ LL       +  +  G+TAL+   +G    +          
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAI---------A 51

Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
             LL  GA  N  D+ G + +  +A  G  D +  ++E+ AD+N  D  G   + ++   
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
                G+  VVS L    + +   D  G+TPL +A   G +D+ +IL  
Sbjct: 112 -----GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  162 bits (412), Expect = 2e-46
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 17/169 (10%)

Query: 378 GQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
               L+ AA +G V  V+ LL     + +  +  G T L+   + G +A+   LL+ GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
            N  D  G + +  AA  G L+          +K+L+  GA VN  D  G   +  +   
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLD---------TLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
           GH  +V S L  ++D++++D  G T L ++        G   +V IL  
Sbjct: 112 GHTAVV-SFLAAESDLHRRDARGLTPLELAL-----QRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  150 bits (381), Expect = 4e-42
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           L    A  ++  ++  L        + +++ G+TAL V    G       LL+ GA+ N 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELV-HPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            D  G +P+  A+  G    +K+L++ GADVN  D  G   +  A   GH          
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA-------- 115

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
            VV  L  A + ++  D+ G T L  +   G  D+V
Sbjct: 116 -VVSFLA-AESDLHRRDARGLTPLELALQRGAQDLV 149

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (366), Expect = 4e-40
 Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
               L  AA  G       LL  E    D +++ G+T L      G  +    LL  GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
            +  D  G + +  AA  G +D +  L++ G              ++    D  G  P+H
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHG------------ADVNVP--DGTGALPIH 106

Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            A  EGH  V    L A + + + D  G  PL LA Q G   LV++    
Sbjct: 107 LAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (365), Expect = 6e-40
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 486 GRTALIASAYMGHADIVSSILE-YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
               L  +A  G    V  +L       +  +  G+TAL V         G   +   LL
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSTAIALELL 55

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
           ++GA  + +D  G +P+  AA  G  D  ++L+E+ AD +  D +G  P+  A   GH +
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
            V+ L    + +   DA G T L +A  +G  D+V+ L  
Sbjct: 116 VVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  131 bits (333), Expect = 1e-35
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 590 GRTPLWAAASMGHASCVALLLF-WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI 648
               L  AA+ G    V  LL     + D ++  G+T L      G+  +  +LL +G  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQG-- 58

Query: 649 LGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI 708
               A            +D  G +P+H AA  G  +  + L+E GA V+  D  G  P+ 
Sbjct: 59  ----A--------SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106

Query: 709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           LA Q+GH  +V     +  ++++++   G T L
Sbjct: 107 LAVQEGHTAVVSFLAAE--SDLHRRDARGLTPL 137

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 3e-15
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D+   S +H       ++ LK  L    A D+ + D  G   +++A  +G    V  L  
Sbjct: 65  DTSGTSPVHDAARTGFLDTLK-VLVEHGA-DVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLL 431
             ++++  D  G TPL  A   G   +V +L 
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
            AA+ G  D +++L+ +GAD    D  G     +A + GH  V+  L   +D
Sbjct: 74  DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
                G       LL  GA P   D  G +    AA++G  +T+  L++  AD    D  
Sbjct: 41  QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100

Query: 944 YF--VHYYYYYNSAKSGHETVLRLLKQYAD 971
               +H      + + GH  V+  L   +D
Sbjct: 101 GALPIHL-----AVQEGHTAVVSFLAAESD 125

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLH-YGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
            AA  G    VR LLH     P   +  G+ A +V         L LLKQ A 
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  178 bits (453), Expect = 2e-49
 Identities = 51/388 (13%), Positives = 100/388 (25%), Gaps = 84/388 (21%)

Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
           + + +L    A  N N  + +    +A    +  +       +      +D + +LL + 
Sbjct: 62  QVRQLLCLYYAHYNRNAKQLW---SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 118

Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM--GGRTALRAAAWGGHLEV 459
             +     E +   R A+  GH  V+  L +       + +      A R AA  GHL  
Sbjct: 119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH- 177

Query: 460 TIVLGPLCVVKLLLAAGAHVNAAD--SEGRTAL-IASAYMGHADIVSSILEYDADINQQD 516
                   V+  L         A   +E   A   A+   GH ++++ +L+    +   +
Sbjct: 178 --------VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

Query: 517 NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
                             G   V   +     ++    +E      ++  +G  D+    
Sbjct: 230 IHE------------FEYGEKYVNPFIARHVNRL----KEMHDAFKLSNPDGVFDLVT-- 271

Query: 577 LENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI 636
                        G   L                               +L       +I
Sbjct: 272 -------KSECLQGFYMLRNLIRRND---------------------EVLLDDIRFLLSI 303

Query: 637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV 696
             +  L                               L  A   G++  C  LL   + +
Sbjct: 304 PGIKALAPTAT------------------IPGDANELLRLALRLGNQGACALLLSIPSVL 345

Query: 697 DQVDNDGRAPLILAAQDGHYHLVEMFLE 724
                +      +    G   L  + LE
Sbjct: 346 ALTKANN---YYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  156 bits (396), Expect = 9e-42
 Identities = 58/374 (15%), Positives = 98/374 (26%), Gaps = 73/374 (19%)

Query: 389 GFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTAL 448
            + +A+ I L    N+          L    +  ++   K L                  
Sbjct: 45  SYKEAIHIFLPGTKNMEQVR-----QLLCLYYAHYNRNAKQLWSDAHKKGIK---SEVIC 96

Query: 449 RAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY 508
             AA  G          L  + LLL +   V    +E   A   +A  GH  +++ + E 
Sbjct: 97  FVAAITGCSSA------LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 509 DADINQQD--NDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED--REGMTPLLVA 564
                      +   A  ++A      +G+  V++ L E            E       A
Sbjct: 151 APTEIMAMIQAENYHAFRLAA-----ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

Query: 565 AFE-GHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
           A   GH +V   LL+      + +             G       +      +     E 
Sbjct: 206 AVGRGHHNVINFLLDCPVMLAYAEI-------HEFEYGEKYVNPFIARHVNRL----KEM 254

Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
                ++   G  D+V                        +     G+  L        E
Sbjct: 255 HDAFKLSNPDGVFDLV-----------------------TKSECLQGFYMLRNLIRRNDE 291

Query: 684 ---EVCRAL-----LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ-------YEA 728
              +  R L     ++A A    +  D    L LA + G+     + L            
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN 351

Query: 729 NVNQKSHDGRTALR 742
           N       GR  LR
Sbjct: 352 NYYINETGGRLDLR 365

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  121 bits (305), Expect = 9e-30
 Identities = 38/283 (13%), Positives = 76/283 (26%), Gaps = 42/283 (14%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
           + +  ++N           ++++L    +      + ++      A  +AA  G +  + 
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 396 ILLEAGANINHTDC--EGWTPLRSASWG-GHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
            L E            E +   R A+ G GH  V+  LL     +         A     
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEF 233

Query: 453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADI 512
             G            V   +      +         A   S   G  D+V+         
Sbjct: 234 EYGE---------KYVNPFIARHVNRLKE----MHDAFKLSNPDGVFDLVT--------- 271

Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSIL-----LEKGAKVDHEDREGMTPLLVAAFE 567
             +   G   L        + +     +  L     ++  A       +    L +A   
Sbjct: 272 KSECLQGFYMLRNLIRR--NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329

Query: 568 GHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLL 610
           G++  C +LL   +             +   + G     A+ L
Sbjct: 330 GNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.4 bits (180), Expect = 6e-14
 Identities = 43/334 (12%), Positives = 87/334 (26%), Gaps = 49/334 (14%)

Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE---EVCR 687
               N++ V QLL   +         +    D   +          AAI G     +   
Sbjct: 55  PGTKNMEQVRQLL--CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLC 112

Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQY-EANVNQKSHDGRTALRVNMK 746
            LL +   V  +  +      LAA++GH H++    E      +     +   A R+  +
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 172

Query: 747 N----VTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEY-----KKRL 797
           N    V       L            L P     +    +      +            L
Sbjct: 173 NGHLHVLN----RLC----------ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218

Query: 798 HILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLN----DGHL-IHAVDLSQRR 852
                +++ A            + ++    +  K    +      DG   +       + 
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG 278

Query: 853 QTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISI-----------AAQEGHEDCVRL 901
                + +    DE    D    + +   K     +            A + G++    L
Sbjct: 279 FYMLRNLI-RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 902 LLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           LL   +    +     N + +    G   +  + 
Sbjct: 338 LLSIPSVLALTK---ANNYYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 70.0 bits (171), Expect = 8e-13
 Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 24/122 (19%)

Query: 371 LELVDKH----GQTALNVAAHQGFVDAVQIL--------LEAGANINHTDCEGWTPLRSA 418
            +LV K     G   L     +     +  +        ++A A       +    LR A
Sbjct: 267 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326

Query: 419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478
              G+     LLL   + +  +             GG L++           + L    H
Sbjct: 327 LRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDL---------RAVALEHHHH 374

Query: 479 VN 480
            +
Sbjct: 375 HH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 9/103 (8%)

Query: 342 KNQSVLHKLCAENNINLLKT--FLKSCEAL----DLELVDKHGQTALNVAAHQGFVDAVQ 395
           +   +L  L   N+  LL    FL S   +        +       L +A   G   A  
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
           +LL   + +  T             GG   +  + L+     +
Sbjct: 337 LLLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 888 SIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYADDSEYFV 946
           +I       D + LLL      K        AFR+AA++GH   + RL +    +    +
Sbjct: 100 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159

Query: 947 HYYYYY---NSAKSGH-ETVLRLLKQYADD 972
               Y+    +A++GH   + RL +    +
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTE 189

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRN--AFRVAA-KSGH-ETVLRLLKQYADDSEY 944
           +AA+ GH   +  L         +     N  AFR AA   GH   +  LL      +  
Sbjct: 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-- 226

Query: 945 FVHYYYYYNSAKSGHETVLRLLKQYADDI 973
               Y   +  + G + V   + ++ + +
Sbjct: 227 ----YAEIHEFEYGEKYVNPFIARHVNRL 251

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  136 bits (346), Expect = 2e-36
 Identities = 46/205 (22%), Positives = 72/205 (35%), Gaps = 26/205 (12%)

Query: 557 GMTPLLVAAFEGHRD-VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
             +PLL+AA E     + ++L     +       G T L  AA   +     +L+     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 616 VDTI-----DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA-----GGRQTGSLDEQH 665
           +          EG+T L +A    N+++V  LL RG      A                +
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG------ASVSARATGSVFHYRPHN 116

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE- 724
               G  PL +AA  G EE+ R L+E GA +   D+ G   L +     +          
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

Query: 725 --QYEANVNQKS------HDGRTAL 741
              Y+   + KS      + G T  
Sbjct: 177 LLSYDGGDHLKSLELVPNNQGLTPF 201

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLK 936
            AA  G E+ VRLL+ +GAD +  D  G     +     +     ++  
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 889 IAAQEGHEDCV-RLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA+E     + +LL   G +       G  A  +AA   + E  + L++   +
Sbjct: 9   LAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  168 bits (428), Expect = 2e-48
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           + +     L  AA +G ++ +  LL+   N+N  +  G T L+     G+  + + LL  
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR 59

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA+ +  D  G   +  AA  G L+          ++ LL   A VN  D+EG   L  +
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLD---------TLQTLLEFQADVNIEDNEGNLPLHLA 110

Query: 494 AYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           A  GH  +V  ++++ A ++  +++ G TA  ++ L      G  +VVS++   GA
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL-----YGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  164 bits (417), Expect = 6e-47
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
                L SA+  G    +  LLQ+  +VN  +  GRTAL+    G + E+          
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEI---------A 53

Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
           + LL  GA+ +  D  G   +  +A  G  D + ++LE+ AD+N +DN+G   L ++A  
Sbjct: 54  RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-- 111

Query: 530 VPSSDGYAKVVSILLEKGAK-VDHEDREGMTPLLVAAFEGHRDVCEILLENEA 581
               +G+ +VV  L++  A  V H + +G T   +A   G  +V  ++  N A
Sbjct: 112 ---KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  144 bits (367), Expect = 3e-40
 Identities = 54/210 (25%), Positives = 79/210 (37%), Gaps = 52/210 (24%)

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
                L ++A  G  + ++S+L+ + ++N Q+  GRTAL V  L      G  ++   LL
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL------GNPEIARRLL 57

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
            +GA  D +DR G   +  AA  G  D  + LLE +AD +  D  G  PL  AA  GH  
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
            V  L+   A                    N+                            
Sbjct: 118 VVEFLVKHTA-------------------SNVG--------------------------- 131

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
           HR++ G T    A + G  EV   +   GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  140 bits (356), Expect = 9e-39
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
           + +     L +AA+ G    +  LL     V+  +  GRT L      GN ++  +LL R
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLR 59

Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705
           G               +   +D  G+  +H AA  G  +  + LLE  A V+  DN+G  
Sbjct: 60  G--------------ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105

Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRV----NMKNVTKL 751
           PL LAA++GH  +VE  ++   +NV  ++H G TA  +        V  L
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  139 bits (354), Expect = 2e-38
 Identities = 48/171 (28%), Positives = 65/171 (38%), Gaps = 16/171 (9%)

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
                L  AA  G  +    LL+N  + +  +  GRT L     +G+      LL  GA 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62

Query: 616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLH 675
            D  D  G  V+  AA  G +D +  LL+        A        D    DN G  PLH
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ------A--------DVNIEDNEGNLPLH 108

Query: 676 YAAIEGHEEVCRALLEAGAK-VDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            AA EGH  V   L++  A  V   ++ G     LA   G   +V +    
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  137 bits (349), Expect = 8e-38
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           L    A  ++  L   L      ++   +  G+TAL V    G  +  + LL  GAN + 
Sbjct: 9   LASAAARGDLEQLT-SLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            D  G+  +  A+  G    ++ LL+  ADVN  D  G   L  AA  GHL         
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR-------- 117

Query: 467 CVVKLLLAAGAH-VNAADSEGRTALIASAYMGHADIVSSILEYDA 510
            VV+ L+   A  V   + +G TA   +   G  ++VS +    A
Sbjct: 118 -VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.8 bits (110), Expect = 1e-05
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD----DSE 943
              + G+ +  R LL  GA+P   D  G      AA++G  +T+  LL+  AD    D+E
Sbjct: 43  QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE 102

Query: 944 YF--VHYYYYYNSAKSGH-ETVLRLLKQYADDI 973
               +H      +AK GH   V  L+K  A ++
Sbjct: 103 GNLPLHL-----AAKEGHLRVVEFLVKHTASNV 130

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGA-DPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+EGH   V  L+ + A +  H +H G  A  +A   G   V+ L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 9e-05
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
            AA  G  + +  LL    +    +  GR A +V      E   RLL + A+
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 62

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  171 bits (434), Expect = 6e-48
 Identities = 57/282 (20%), Positives = 92/282 (32%), Gaps = 47/282 (16%)

Query: 474 AAGAHVNAADSEGRTALIASAYMGHADIVSSILEY-------DADINQQDND-GRTALSV 525
           +  A         R ++  +    +   + S+L +         D   +D + G+T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDH-----------EDREGMTPLLVAAFEGHRDVCE 574
           + L +   +G    +++LL+   K D               +G T L +A    +  +  
Sbjct: 61  AMLNL--HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

Query: 575 ILLENEADQDHIDKS--------------GRTPLWAAASMGHASCVALLL---FWGAYVD 617
           +L+EN AD                     G  PL  AA     + V  LL   +  A + 
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ--TGSLDEQHRDNCGWTPLH 675
             D+ G TVL       +  V N      M    L  G +       E+  +  G TPL 
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238

Query: 676 YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
            AA  G   V   +L+                  AA   H+H
Sbjct: 239 LAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  159 bits (405), Expect = 6e-44
 Identities = 60/301 (19%), Positives = 98/301 (32%), Gaps = 75/301 (24%)

Query: 339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVD------KHGQTALNVA---AHQG 389
               ++  +    A++N   L++ L   +     L D      + G+T L  A    H G
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68

Query: 390 FVDAVQILLEAGANINHT-----------DCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
             D + +LL+     +               +G T L  A    +  +V LL+++GADV 
Sbjct: 69  QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

Query: 439 CSDMG--------------GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG---AHVNA 481
            +  G              G   L  AA    L          +VK LL      A ++A
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA---------IVKFLLQNSWQPADISA 179

Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
            DS G T L A   +    + ++                             +    + +
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTS----------------------MYNEILILGA 217

Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
            L       +  +R+G+TPL +AA  G   V   +L+ E               AAA   
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270

Query: 602 H 602
           H
Sbjct: 271 H 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  126 bits (317), Expect = 3e-32
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 40/235 (17%)

Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLE-------NEADQDHID-KSGRTPLWAA- 597
            A            +  A  + +    E LL           D +  D ++G+T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 598 --ASMGHASCVALLLFWGAYVDTI-----------DAEGRTVLSVAAAQGNIDVVNQLLD 644
                G    +ALLL      D++             +G+T L +A  + N+ +V  L++
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG---AKVDQVDN 701
            G  +   A G        +     G  PL  AA      + + LL+     A +   D+
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182

Query: 702 DGRAPLILAAQDGHYHLVEM---------------FLEQYEANVNQKSHDGRTAL 741
            G   L    +     +                   L          +  G T L
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKS--------------CEALDLELVDKHGQTA 381
           I+  DS   +VLH L    +  +  T   +                    E+ ++ G T 
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH 423
           L +AA  G +  +  +L+   +             +A+   H
Sbjct: 237 LALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 888 SIAAQEGHEDCVRLLLHYG---ADPKHSDHCGRNAFRVAAKSGHETV 931
           S+AA       V+ LL      AD    D  G        +    TV
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  166 bits (422), Expect = 1e-47
 Identities = 54/176 (30%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432
            +      L  AA  G V+ V+ L      N    +    TPL  A+     +VV+ LLQ
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
            GADV+  D GG   L  A   GH EV          +LL+  GA VN AD    T L  
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEV---------AELLVKHGAVVNVADLWKFTPLHE 114

Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           +A  G  +I   +L++ AD  +++ DG T L +        DG   +  +L    A
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK------DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  140 bits (355), Expect = 1e-38
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 11/163 (6%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           +S+    L +     ++  +K  L + ++++   ++    T L+ AA    V  V+ LL+
Sbjct: 5   NSEADRQLLEAAKAGDVETVK-KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            GA+++  D  G  PL +A   GH  V +LL++ GA VN +D+   T L  AA  G  E 
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE- 122

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV 502
                   + KLLL  GA     + +G T L      G  DI 
Sbjct: 123 --------ICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQ 156

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  130 bits (331), Expect = 2e-35
 Identities = 51/186 (27%), Positives = 68/186 (36%), Gaps = 24/186 (12%)

Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEG 568
           A  N   ++    L  +A       G  + V  L           +    TPL  AA   
Sbjct: 2   AMGN---SEADRQLLEAA-----KAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN 53

Query: 569 HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
              V E LL++ AD    DK G  PL  A S GH     LL+  GA V+  D    T L 
Sbjct: 54  RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113

Query: 629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA 688
            AAA+G  ++   LL  G      A        D   ++  G TPL     +G  ++   
Sbjct: 114 EAAAKGKYEICKLLLQHG------A--------DPTKKNRDGNTPLDLVK-DGDTDIQDL 158

Query: 689 LLEAGA 694
           L    A
Sbjct: 159 LRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  122 bits (310), Expect = 2e-32
 Identities = 50/196 (25%), Positives = 68/196 (34%), Gaps = 52/196 (26%)

Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASC 605
           GA  +    E    LL AA  G  +  + L   +  +   I+    TPL  AA     S 
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 606 VALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
           V  LL  GA                    ++                             
Sbjct: 58  VEYLLQHGA--------------------DVHA--------------------------- 70

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           +D  G  PLH A   GH EV   L++ GA V+  D     PL  AA  G Y + +  L Q
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK-LLLQ 129

Query: 726 YEANVNQKSHDGRTAL 741
           + A+  +K+ DG T L
Sbjct: 130 HGADPTKKNRDGNTPL 145

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA       V  LL +GAD    D  G      A   GH E    L+K  A 
Sbjct: 48  FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.2 bits (98), Expect = 4e-04
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
            AA +G  +  +LLL +GADP   +  G     +    G   +  LL+  
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.8 bits (97), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            A   GH +   LL+ +GA    +D         AA  G  E    LL+  AD
Sbjct: 81  NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  159 bits (406), Expect = 8e-46
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 11/143 (7%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
            + ++       L  AA +G V+ V+ LLEAGA+ N  +  G  P++     G + V +L
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 430 LLQSGADVNCSDMGGRT-ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
           LL  GA+ NC+D    T  +  AA  G L+          + +L  AGA ++  D+ GR 
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLD---------TLVVLHRAGARLDVCDAWGRL 113

Query: 489 ALIASAYMGHADIVSSILEYDAD 511
            +  +   GH DI   +     D
Sbjct: 114 PVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  159 bits (405), Expect = 1e-45
 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
               I+         L +A+  G    V+ LL++GAD N  +  GR  ++     G  + 
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQ- 58

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRT-ALIASAYMGHADIVSSILEYDADINQQDND 518
                   V +LLL  GA  N AD    T  +  +A  G  D +  +    A ++  D  
Sbjct: 59  --------VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW 110

Query: 519 GRTALSVSALCVPSSDGYAKVVSILLEKGA 548
           GR  + ++        G+  +   L     
Sbjct: 111 GRLPVDLAE-----EQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (360), Expect = 1e-39
 Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 16/149 (10%)

Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCV 606
              +          L  AA  G  +    LLE  AD + +++ GR P+     MG A   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60

Query: 607 ALLLFWGAYVDTIDAEGRTV-LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH 665
            LLL  GA  +  D    T  +  AA +G +D +  L   G      A            
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG------A--------RLDV 106

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGA 694
            D  G  P+  A  +GH ++ R L  A  
Sbjct: 107 CDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (296), Expect = 5e-31
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
              +  +       L+ AAA+G ++ V QLL+ G      A        D    +  G  
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAG------A--------DPNALNRFGRR 47

Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR-APLILAAQDGHYHLVEMFLEQYEANVN 731
           P+      G  +V   LL  GA+ +  D      P+  AA++G    + +      A ++
Sbjct: 48  PIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLD 105

Query: 732 QKSHDGRTAL 741
                GR  +
Sbjct: 106 VCDAWGRLPV 115

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 692 AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
               +  +     A L  AA  G    V   LE   A+ N  +  GR  +
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPI 49

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.4 bits (132), Expect = 7e-09
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA+EG  D + +L   GA     D  GR    +A + GH +    L     D
Sbjct: 84  DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD----DSEY 944
            AA  G  + VR LL  GADP   +  GR   +V      +    LL   A+    D   
Sbjct: 18  TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPAT 77

Query: 945 F---VHYYYYYNSAKSGH-ETVLRLLKQYAD 971
               VH      +A+ G  +T++ L +  A 
Sbjct: 78  LTRPVHD-----AAREGFLDTLVVLHRAGAR 103

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  159 bits (405), Expect = 2e-45
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 15/166 (9%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
               L  AA  G  D V+IL+  GA    TD  G +PL  A+  GH +  ++LL++G   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
           +      RT L  AA  GH  +         V++LL  GA VNA D    TAL  +    
Sbjct: 61  DARTKVDRTPLHMAASEGHANI---------VEVLLKHGADVNAKDMLKMTALHWATEHN 111

Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSIL 543
           H ++V  +++Y AD++ Q    +TA  +S       +G   +  IL
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISI-----DNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  153 bits (390), Expect = 2e-43
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 15/167 (8%)

Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
           +    L  A+  G    V++L+ +GA    +D  G + L  AA  GH             
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFS---------TT 50

Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
           ++LL AG   +A     RT L  +A  GHA+IV  +L++ AD+N +D    TAL  +   
Sbjct: 51  EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110

Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
                 + +VV +L++ GA V  + +   T   ++   G+ D+ EIL
Sbjct: 111 -----NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  139 bits (353), Expect = 2e-38
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 9/128 (7%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
           D  G + L++AA  G     ++LL AG + +       TPL  A+  GH+ +V++LL+ G
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
           ADVN  DM   TAL  A    H E         VV+LL+  GA V+      +TA   S 
Sbjct: 91  ADVNAKDMLKMTALHWATEHNHQE---------VVELLIKYGADVHTQSKFCKTAFDISI 141

Query: 495 YMGHADIV 502
             G+ D+ 
Sbjct: 142 DNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  139 bits (353), Expect = 2e-38
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHI--DKSGRTPLWAAASMGHASCVALLLFWG 613
           +    LL AA  G  D   IL+ N A       D  G +PL  AA  GH S   +LL  G
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
              D      RT L +AA++G+ ++V  LL  G              ++ +  D    T 
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHG------------ADVNAK--DMLKMTA 103

Query: 674 LHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           LH+A    H+EV   L++ GA V       +    ++  +G+  L E+
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  129 bits (326), Expect = 9e-35
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 6/158 (3%)

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
           +    L+ +A  G  D V  ++   A     D  G + L ++A       G+     +LL
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQY-----GHFSTTEVLL 54

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
             G   D   +   TPL +AA EGH ++ E+LL++ AD +  D    T L  A    H  
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
            V LL+ +GA V T     +T   ++   GN D+   L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  104 bits (261), Expect = 4e-26
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D    S LH      + +  +  L        +   K  +T L++AA +G  + V++LL+
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTE-VLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVLLK 88

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            GA++N  D    T L  A+   H  VV+LL++ GADV+      +TA   +   G+ ++
Sbjct: 89  HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148

Query: 460 TIVL 463
             +L
Sbjct: 149 AEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  102 bits (256), Expect = 2e-25
 Identities = 39/120 (32%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
           +    L  AA  G  D V  L+  G                    D  G +PLH AA  G
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF---------------TTDWLGTSPLHLAAQYG 45

Query: 682 HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           H      LL AG   D      R PL +AA +GH ++VE+ L+ + A+VN K     TAL
Sbjct: 46  HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTAL 104

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
            A +  H++ V LL+ YGAD        + AF ++  +G+E +  +L+
Sbjct: 106 WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.5 bits (104), Expect = 5e-05
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AAQ GH     +LL  G          R    +AA  GH   V  LLK  AD
Sbjct: 40  LAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.1 bits (103), Expect = 8e-05
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA EGH + V +LL +GAD    D     A   A +  H E V  L+K  AD
Sbjct: 73  MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  152 bits (387), Expect = 2e-43
 Identities = 68/134 (50%), Positives = 85/134 (63%), Gaps = 9/134 (6%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
           +G+T L++AA  G ++ V++LLEAGA++N  D  G TPL  A+  GH  VVKLLL++GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
           VN  D  GRT L  AA  GHLE         VVKLLL AGA VNA D  GRT L  +A  
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGADVNAKDKNGRTPLHLAARN 111

Query: 497 GHADIVSSILEYDA 510
           GH ++V  +LE  A
Sbjct: 112 GHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  147 bits (374), Expect = 1e-41
 Identities = 69/138 (50%), Positives = 85/138 (61%), Gaps = 14/138 (10%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
           G TPL  A+  GH  VVKLLL++GADVN  D  GRT L  AA  GHLEV         VK
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV---------VK 52

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
           LLL AGA VNA D  GRT L  +A  GH ++V  +LE  AD+N +D +GRT L ++A   
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA--- 109

Query: 531 PSSDGYAKVVSILLEKGA 548
              +G+ +VV +LLE GA
Sbjct: 110 --RNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  134 bits (340), Expect = 4e-37
 Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 5/130 (3%)

Query: 486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
           GRT L  +A  GH ++V  +LE  AD+N +D +GRT L ++A      +G+ +VV +LLE
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56

Query: 546 KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC 605
            GA V+ +D+ G TPL +AA  GH +V ++LLE  AD +  DK+GRTPL  AA  GH   
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

Query: 606 VALLLFWGAY 615
           V LLL  GAY
Sbjct: 117 VKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  132 bits (336), Expect = 2e-36
 Identities = 64/138 (46%), Positives = 78/138 (56%), Gaps = 14/138 (10%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
           G TPL +AA  GH +V ++LLE  AD +  DK+GRTPL  AA  GH   V LLL  GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
           +  D  GRT L +AA  G+++VV  LL+ G               D   +D  G TPLH 
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--------------DVNAKDKNGRTPLHL 107

Query: 677 AAIEGHEEVCRALLEAGA 694
           AA  GH EV + LLEAGA
Sbjct: 108 AARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  125 bits (318), Expect = 4e-34
 Identities = 61/132 (46%), Positives = 80/132 (60%), Gaps = 11/132 (8%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH      ++ ++K  L    A D+   DK+G+T L++AA  G ++ V++LLEAGA++N 
Sbjct: 6   LHLAARNGHLEVVK-LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            D  G TPL  A+  GH  VVKLLL++GADVN  D  GRT L  AA  GHLE        
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE-------- 115

Query: 467 CVVKLLLAAGAH 478
            VVKLLL AGA+
Sbjct: 116 -VVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  112 bits (284), Expect = 2e-29
 Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 15/119 (12%)

Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           GRT L +AA  G+++VV  LL+ G      A        D   +D  G TPLH AA  GH
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG------A--------DVNAKDKNGRTPLHLAARNGH 47

Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            EV + LLEAGA V+  D +GR PL LAA++GH  +V++ LE   A+VN K  +GRT L
Sbjct: 48  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 28/86 (32%), Positives = 31/86 (36%), Gaps = 38/86 (44%)

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
           G TPLH AA  GH EV + LLEAGA                                  +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA----------------------------------D 27

Query: 730 VNQKSHDGRTAL----RVNMKNVTKL 751
           VN K  +GRT L    R     V KL
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKL 53

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.1 bits (116), Expect = 7e-07
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+ GH + V+LLL  GAD    D  GR    +AA++GH  V++LL
Sbjct: 74  LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.3 bits (114), Expect = 2e-06
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+ GH + V+LLL  GAD    D  GR    +AA++GH  V++LL
Sbjct: 8   LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+ GH + V+LLL  GAD    D  GR    +AA++GH  V++LL
Sbjct: 41  LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  152 bits (387), Expect = 3e-43
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
           G +   T+  G T L  AS  G    V+ LLQ+G+D N  D  G T L  A   GHL+V 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV- 58

Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
                   V+LLL   A VN    +  + L  +A  GH DIV  +L Y A  N  +  G 
Sbjct: 59  --------VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL 110

Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGA 548
             +  +       +    ++ +  +  +
Sbjct: 111 RPVDYTD-----DESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  149 bits (379), Expect = 4e-42
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 10/139 (7%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
           +  G+T L++A+ +G + +V+ LL+ G++ N  D  GWTPL  A   GH  VV+LLLQ  
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
           A VN +     + L  AA  GH++         +VKLLL+ GA  NA +  G   +  + 
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVD---------IVKLLLSYGASRNAVNIFGLRPVDYTD 117

Query: 495 YMGHADIVSSILEYDADIN 513
                 ++  + E +   +
Sbjct: 118 DESMKSLL-LLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  123 bits (312), Expect = 4e-33
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
            D    ++ G T L +++       G    V  LL+ G+  + +D  G TPL  A   GH
Sbjct: 2   IDPFT-NHRGETLLHIAS-----IKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH 55

Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSV 629
             V E+LL+++A  +       +PL  AA  GH   V LLL +GA  + ++  G   +  
Sbjct: 56  LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

Query: 630 AAAQGNIDVVNQLLDRG 646
              +    ++  L ++ 
Sbjct: 116 TDDESMKSLL-LLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  120 bits (305), Expect = 3e-32
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 14/141 (9%)

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
           +  G T L +A+ +G     E LL+N +D +  D +G TPL  A + GH   V LLL   
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTP 673
           A V+T   +  + L  AA  G++D+V  LL  G      A             +  G  P
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG------A--------SRNAVNIFGLRP 112

Query: 674 LHYAAIEGHEEVCRALLEAGA 694
           + Y   E  + +     +  +
Sbjct: 113 VDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  118 bits (299), Expect = 2e-31
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 12/143 (8%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           + + +++LH    + +I  ++ +L    + D  + D  G T L+ A + G +  V++LL+
Sbjct: 7   NHRGETLLHIASIKGDIPSVE-YLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
             A +N T  +  +PL  A+  GH  +VKLLL  GA  N  ++ G   +           
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS- 123

Query: 460 TIVLGPLCVVKLLLAAGAHVNAA 482
                   ++ L     +  +A+
Sbjct: 124 --------LLLLPEKNES-SSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  117 bits (296), Expect = 5e-31
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 20/143 (13%)

Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
           G    T +  G T+L +A+ +G+I  V  LL  G      +        D   +D+ GWT
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNG------S--------DPNVKDHAGWT 45

Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
           PLH A   GH +V   LL+  A V+       +PL  AA++GH  +V++ L    A+ N 
Sbjct: 46  PLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNA 104

Query: 733 KSHDGRTALRV----NMKNVTKL 751
            +  G   +      +MK++  L
Sbjct: 105 VNIFGLRPVDYTDDESMKSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS 942
            AA+ GH D V+LLL YGA     +  G            +++L L ++    S
Sbjct: 82  DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.2 bits (116), Expect = 9e-07
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           IA+ +G    V  LL  G+DP   DH G      A   GH + V  LL+  A 
Sbjct: 16  IASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  151 bits (385), Expect = 4e-43
 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           +          A   G +D V+  +  G ++N T   G  PL  A+  G   +++ LL  
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GAD+N  D    T L +A + GH+           VKLLL+ GA       +G TA  A+
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVS---------CVKLLLSKGADKTVKGPDGLTAFEAT 113

Query: 494 AYMGHADIV 502
                  ++
Sbjct: 114 DNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  138 bits (351), Expect = 2e-38
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
                  A   G    VK  +  G DVN +  GGR  L  AA  G LE+         ++
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI---------LE 57

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
            LL  GA +NA D    T L+++ Y GH   V  +L   AD   +  DG TA   +    
Sbjct: 58  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT---- 113

Query: 531 PSSDGYAKVV 540
             +     ++
Sbjct: 114 -DNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  129 bits (327), Expect = 3e-35
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
              S      + +   G  D V   +    D+N+    GR  L  +A C     G  +++
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-----GQLEIL 56

Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600
             LL KGA ++  D+  +TPLL A +EGH    ++LL   AD+      G T   A  + 
Sbjct: 57  EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116

Query: 601 GHASCV 606
              + +
Sbjct: 117 AIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  124 bits (313), Expect = 2e-33
 Identities = 30/164 (18%), Positives = 41/164 (25%), Gaps = 47/164 (28%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
                + A   G  D  +  +    D +   + GR PL  AA  G    +  LL  GA +
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
           +                                                 D    TPL  
Sbjct: 67  NA-----------------------------------------------PDKHHITPLLS 79

Query: 677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE 720
           A  EGH    + LL  GA       DG              L++
Sbjct: 80  AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  116 bits (293), Expect = 1e-30
 Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
            +        +       +G    V   + KG  V+     G  PL  AA  G  ++ E 
Sbjct: 4   GSMCDKEFMWAL-----KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF 58

Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
           LL   AD +  DK   TPL +A   GH SCV LLL  GA       +G T       Q  
Sbjct: 59  LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118

Query: 636 IDVV 639
             ++
Sbjct: 119 KALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (289), Expect = 3e-30
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 15/123 (12%)

Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
           + +        A   G++D V   + +G               D       G  PLHYAA
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKG------E--------DVNRTLEGGRKPLHYAA 48

Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR 738
             G  E+   LL  GA ++  D     PL+ A  +GH   V++ L +  A+   K  DG 
Sbjct: 49  DCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGL 107

Query: 739 TAL 741
           TA 
Sbjct: 108 TAF 110

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  113 bits (285), Expect = 1e-29
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
                   +++ +K    +    D+    + G+  L+ AA  G ++ ++ LL  GA+IN 
Sbjct: 11  FMWALKNGDLDEVK-DYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            D    TPL SA + GH + VKLLL  GAD       G TA  A        +
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.4 bits (179), Expect = 3e-15
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH       + +L+ FL    A D+   DKH  T L  A ++G V  V++LL  GA+   
Sbjct: 44  LHYAADCGQLEILE-FLLLKGA-DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

Query: 407 TDCEGWTPLRSASWGGHSAVVK 428
              +G T   +       A+++
Sbjct: 102 KGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLR 933
            A  EGH  CV+LLL  GAD       G  AF        + +L+
Sbjct: 79  SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            A + G  D V+  +  G D   +   GR     AA  G   +L  L
Sbjct: 13  WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 3e-06
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            AA  G  + +  LL  GAD    D         A   GH + ++LL
Sbjct: 46  YAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  154 bits (390), Expect = 5e-43
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 18/189 (9%)

Query: 376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE---GWTPLRSASWGGHSAVVKLLLQ 432
                 ++ AA  G  +    L E G     +  +    +  LR+ +      +   L+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIA 492
            GAD+      G T       GG  ++T   G   + K+ L  GA + A     +  +  
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDIT---GTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 493 SAYMGHADIVSS-------ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
           + +    D             +    +  +D  G TAL     C          + ++ +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC-----QKPIALKMMED 175

Query: 546 KGAKVDHED 554
              K + ++
Sbjct: 176 YIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  147 bits (373), Expect = 9e-41
 Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 48/224 (21%)

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
                + A+A +G  +    + E   +    ++  ++ +    L   + +   K+   L+
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDV------CEILLENEADQDHIDKSGRTPLWAAA 598
            KGA +    +EG T        G  D+      C+I LE  AD   + K  +  ++   
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 599 SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQT 658
                    ++  +                    Q  + +                    
Sbjct: 123 FNYFVDENEMIPLYKLIFS---------------QSGLQL-------------------- 147

Query: 659 GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDND 702
                  +D  G T L +          + + +   K +  +N 
Sbjct: 148 -----LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  140 bits (354), Expect = 3e-38
 Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 11/184 (5%)

Query: 343 NQSVLHKLCAENNINLLKTFLKS-CEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
               +                +   E  +  L        L     +        L+  G
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 402 ANINHTDCEGWTPLRSASWGGHSAV------VKLLLQSGADVNCSDMGGRTALRAAAWGG 455
           A+I     EG T       GG + +       K+ L+ GAD+       +  +    +  
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 456 HLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQ 514
            ++       + + KL+ + +G  +   D  G TAL           +  + +Y    N 
Sbjct: 126 FVDEN---EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

Query: 515 QDND 518
           ++N 
Sbjct: 183 KENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  126 bits (318), Expect = 2e-33
 Identities = 26/199 (13%), Positives = 48/199 (24%), Gaps = 33/199 (16%)

Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAA----ASMGHASCVALLL 610
                 +  AA  G  +    L E   + D         L+                 L+
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQ------LLDRGMILGCLAGGRQTGSLDEQ 664
             GA + +   EG T+       G  D+          L++G               D  
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA--------------DIT 108

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRA-------LLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
                    +         +             ++G ++   D  G   L    +     
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

Query: 718 LVEMFLEQYEANVNQKSHD 736
            ++  +E Y    N K + 
Sbjct: 169 ALK-MMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  117 bits (295), Expect = 3e-30
 Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 29/169 (17%)

Query: 588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTI---DAEGRTVLSVAAAQGNIDVVNQLLD 644
            S    + AAA +G       L   G               VL     +    +   L++
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE------EVCRALLEAGAKVDQ 698
           +G               D + R   G T        G        E+C+  LE GA +  
Sbjct: 64  KGA--------------DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109

Query: 699 VDNDGRAPLILAAQDGHY------HLVEMFLEQYEANVNQKSHDGRTAL 741
           +    +  +     +          L ++   Q    +  K   G TAL
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 86.7 bits (215), Expect = 1e-19
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 13/114 (11%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEAL-----DLELVDKHGQTALNVAAHQGFVDAV 394
             +  ++   L      ++  T  + C+       D+  + K  +  +       FVD  
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGT-TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN 130

Query: 395 Q-------ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
           +       I  ++G  +   D  G T L           +K++       N  +
Sbjct: 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 9/49 (18%), Positives = 14/49 (28%)

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +     E        L++ GAD K     G   F    + G   +    
Sbjct: 46  LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 8/60 (13%)

Query: 889 IAAQEGHEDCVR-------LLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-AD 940
                   D          +    G      D  G  A     +      L++++ Y   
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 11/105 (10%), Positives = 24/105 (22%), Gaps = 25/105 (23%)

Query: 889 IAAQEGHED------CVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY---- 938
              Q G  D        ++ L  GAD        +        +       ++  Y    
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140

Query: 939 ----AD----DSEYF--VHYYYYYNSAKSGHETVLRLLKQYADDI 973
                     D      + +       +      L++++ Y    
Sbjct: 141 SQSGLQLLIKDKWGLTALEF-----VKRCQKPIALKMMEDYIKKY 180

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  153 bits (389), Expect = 4e-42
 Identities = 56/276 (20%), Positives = 89/276 (32%), Gaps = 67/276 (24%)

Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELV------DKHGQTALNVAA---HQGFVDA 393
           ++  L  + +      L   L+        L          G+T L  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 394 VQILLEAG-----------ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM 442
           +  LL+             A       +G + L  A        VKLL+++GADV+    
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 443 G-------------GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG---AHVNAADSEG 486
           G             G   L  AA     +         VV  LL      A + A DS G
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWD---------VVTYLLENPHQPASLEATDSLG 172

Query: 487 RTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK 546
            T L       HA            +   ++   +AL +        DG  ++ + L   
Sbjct: 173 NTVL-------HA----------LVMIADNSPENSALVIHMY-----DGLLQMGARLCPT 210

Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
               +  + +G+TPL +AA EG  ++   +L+ E  
Sbjct: 211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  153 bits (389), Expect = 4e-42
 Identities = 51/285 (17%), Positives = 89/285 (31%), Gaps = 69/285 (24%)

Query: 486 GRTALIASAYMGHADIVSSILEY--------DADINQQDNDGRTALSVSALCVPSSDGYA 537
            R  L +    G  + ++ +LEY              + + G+T L  + L     DG  
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLN--LQDGVN 59

Query: 538 KVVSILLEKGAKVDH-----------EDREGMTPLLVAAFEGHRDVCEILLENEAD---- 582
             +  LL+      +           E  +G + L +A  +      ++L+EN AD    
Sbjct: 60  ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR 119

Query: 583 ---------QDHIDKSGRTPLWAAASMGHASCVALLL---FWGAYVDTIDAEGRTVLSVA 630
                    Q      G  PL  AA       V  LL      A ++  D+ G TVL   
Sbjct: 120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
               +                               ++   + L     +G  ++   L 
Sbjct: 180 VMIAD-------------------------------NSPENSALVIHMYDGLLQMGARLC 208

Query: 691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
                 +  ++ G  PL LAA++G   +    L++ E +     H
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR-EFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (257), Expect = 2e-24
 Identities = 37/178 (20%), Positives = 55/178 (30%), Gaps = 29/178 (16%)

Query: 590 GRTPLWAAASMGHASCVALLL--------FWGAYVDTIDAEGRTVLSVAAA---QGNIDV 638
            R  L++  S G    +  LL        +      T  + G+T L  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ 698
           +  LL      G     +   +         G + LH A  +   +  + L+E GA V  
Sbjct: 62  IMPLLQIDKDSGNP---KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL 118

Query: 699 VDN-------------DGRAPLILAAQDGHYHLVEMFLEQ--YEANVNQKSHDGRTAL 741
                            G  PL LAA    + +V   LE     A++      G T L
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (256), Expect = 2e-24
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 43/195 (22%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLK-----------SCEALDLELVDKHGQTALNVAAHQ 388
             +  S LH    + ++  +K  ++                        G+  L++AA  
Sbjct: 87  FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 389 GFVDAVQILLEAG---ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGR 445
              D V  LLE     A++  TD  G T L       H+ V          +   +    
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVL-------HALV----------MIADNSPEN 189

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
           +AL    + G L+         +   L         ++ +G T L  +A  G  +I   I
Sbjct: 190 SALVIHMYDGLLQ---------MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

Query: 506 LEYDA---DINQQDN 517
           L+ +      +   +
Sbjct: 241 LQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 873 HMRIILGSSKVGEK-ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETV 931
           H  +++  +      + I   +G       L       + S+H G    ++AAK G   +
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236

Query: 932 LRLL 935
            R +
Sbjct: 237 FRHI 240

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  143 bits (361), Expect = 1e-37
 Identities = 51/272 (18%), Positives = 95/272 (34%), Gaps = 21/272 (7%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
             K ++ L +L     I  + T L +  +          Q   +V+      +       
Sbjct: 60  KMKLEAFLQRL-LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 400 AGANINH-TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE 458
              N+N   D  G TPL   +   +  +VK L++ G++    D  G + L  A    +  
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178

Query: 459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL------------IASAYMGHADIVSSIL 506
            +          LL      +   DS  RT L             A+A      ++  I+
Sbjct: 179 DSG-----TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233

Query: 507 EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAF 566
           +      Q   + + +   +       D   + + +       ++ +D  G T L +AA 
Sbjct: 234 KKQNRPIQSGTNEKESK-PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292

Query: 567 EGHRDVCEILLENEADQDHIDKSGRTPL-WAA 597
            G+  + + LL+  AD    +KSG  P+ + A
Sbjct: 293 LGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  137 bits (346), Expect = 1e-35
 Identities = 51/313 (16%), Positives = 95/313 (30%), Gaps = 41/313 (13%)

Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVT 460
             N N    +    L+   +     +   L    ++ N          +  ++   L+  
Sbjct: 53  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE- 111

Query: 461 IVLGPLCVVKLLLAAGAHVNAA-DSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                  V         ++N   D  G T L     + + ++V  ++++ ++    DN G
Sbjct: 112 -------VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
            + L  +   V + D      ++L      +  ED    T L                  
Sbjct: 165 ESCLVKAVKSVNNYD-SGTFEALLDYLYPCLILEDSMNRTILHHII-------------- 209

Query: 580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
                    SG T   AAA       +  ++             +            D +
Sbjct: 210 -------ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 640 NQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV 699
            + LD   I+  +        L+ Q  D+ G T L+ AA  G+  +  ALL+ GA     
Sbjct: 263 LENLDLKWIIANM--------LNAQ--DSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312

Query: 700 DNDGRAPLILAAQ 712
           +  G  P+   A 
Sbjct: 313 NKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  134 bits (339), Expect = 9e-35
 Identities = 49/313 (15%), Positives = 104/313 (33%), Gaps = 16/313 (5%)

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
           N +D   RTA     +   L    +  PL ++K L +   + N    +    L    +  
Sbjct: 15  NGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPE 74

Query: 498 HADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH-EDRE 556
             ++ +S+    ++ N +           +          +V          ++   D  
Sbjct: 75  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF----DSLLQEVNDAFPNTQLNLNIPVDEH 130

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA----SCVALLLFW 612
           G TPL       + ++ + L+++ +++ + D  G + L  A    +     +  ALL + 
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 613 GAYVDTIDAEGRTVL----SVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN 668
              +   D+  RT+L      +   G        LD  M        R   S   +    
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEA 728
                 +    +   E           ++  D++G   L +AA+ G+  +V+  L+   A
Sbjct: 251 --PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-A 307

Query: 729 NVNQKSHDGRTAL 741
           +    +  G   +
Sbjct: 308 DPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.7 bits (183), Expect = 2e-14
 Identities = 37/281 (13%), Positives = 85/281 (30%), Gaps = 52/281 (18%)

Query: 657 QTGSLDEQHRDNCGWTPLHYAAIE-GHEEVCRALLEAGAKVD-QVDNDGRAPLILAAQDG 714
              S +             + + +   +EV  A       ++  VD  G  PL       
Sbjct: 83  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142

Query: 715 HYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTV 774
           +  LV+  ++ + +N     + G + L                       + +       
Sbjct: 143 NLELVKHLVK-HGSNRLYGDNMGESCL-----------------------VKAVKS---- 174

Query: 775 EDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYL 834
                       +     ++  L  L   + + ++ +  + HH      +       +Y 
Sbjct: 175 ----------VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 224

Query: 835 CSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKIS------ 888
             +  G ++   +   +  T+   + P+  +    +D+ +  +     +   ++      
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE-RKDSILENLDLKWIIANMLNAQDSNG 283

Query: 889 -----IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAA 924
                IAA+ G+   V  LL YGADP  ++  G       A
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 73.9 bits (181), Expect = 3e-14
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHG--------------QTA 381
           + + DS N+++LH +   + +       K    + +  + K                   
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253

Query: 382 LNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD 441
            N       ++ + +       +N  D  G T L  A+  G+ ++V  LL  GAD   ++
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313

Query: 442 MGGRTALRAAA 452
             G   +   A
Sbjct: 314 KSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH----ETVLRLLKQYADD 941
                 + + V+ L+ +G++  + D+ G +    A KS +     T   LL      
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  134 bits (341), Expect = 2e-37
 Identities = 46/116 (39%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
            K G T L+ AA  G  + V+ LL  GA++N    +G TPL  A+  GH+ +VKLLL  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 435 ADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL 490
           ADVN     G T    A   GH E         +VKLL A GA VNA         
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHE---------IVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  119 bits (301), Expect = 7e-32
 Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 16/128 (12%)

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           G         G T L  AA  GH E          VK LL+ GA VNA   +G T L  +
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEE---------VKKLLSKGADVNARSKDGNTPLHLA 49

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           A  GHA+IV  +L   AD+N +  DG T   ++       +G+ ++V +L  KGA V+  
Sbjct: 50  AKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK-----KNGHHEIVKLLDAKGADVNAR 104

Query: 554 DREGMTPL 561
                   
Sbjct: 105 SWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  112 bits (283), Expect = 2e-29
 Identities = 44/171 (25%), Positives = 56/171 (32%), Gaps = 56/171 (32%)

Query: 547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCV 606
           G       ++G TPL  AA  GH +  + LL   AD +   K G TPL  AA  GHA  V
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 607 ALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHR 666
            LLL  GA                    +++                            R
Sbjct: 59  KLLLAKGA--------------------DVNA---------------------------R 71

Query: 667 DNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH 717
              G TP H A   GH E+ + L   GA V+                 H+H
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH-------HHH 115

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  110 bits (279), Expect = 6e-29
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 17/129 (13%)

Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT 672
           G    + D  G T L  AA  G+ + V +LL +G      A        D   R   G T
Sbjct: 1   GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKG------A--------DVNARSKDGNT 44

Query: 673 PLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
           PLH AA  GH E+ + LL  GA V+    DG  P  LA ++GH+ +V++   +  A+VN 
Sbjct: 45  PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNA 103

Query: 733 KSHDGRTAL 741
           +S       
Sbjct: 104 RSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  107 bits (269), Expect = 1e-27
 Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 510 ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH 569
                   DG T L  +A      +G+A+ V  LL KGA V+   ++G TPL +AA  GH
Sbjct: 2   HMWG--SKDGNTPLHNAA-----KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54

Query: 570 RDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL 627
            ++ ++LL   AD +   K G TP   A   GH   V LL   GA V+          
Sbjct: 55  AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 97.1 bits (243), Expect = 5e-24
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH      +   +K  L S  A D+    K G T L++AA  G  + V++LL  GA++N 
Sbjct: 13  LHNAAKNGHAEEVK-KLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTAL 448
              +G TP   A   GH  +VKLL   GADVN    G     
Sbjct: 71  RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 9e-07
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
            AA+ GH + V+ LL  GAD       G     +AAK+GH E V  LL + AD
Sbjct: 15  NAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.4 bits (109), Expect = 5e-06
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA+ GH + V+LLL  GAD       G     +A K+GH E V  L  + AD
Sbjct: 48  LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  132 bits (334), Expect = 4e-36
 Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 12/141 (8%)

Query: 372 ELVDKHG---QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
                HG      L  AA  G  D V+IL+  GA++N  D  G TPL  A+  GH  +V+
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 429 LLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRT 488
           +LL++GADVN  D  G T L  AA+ GHLE         + ++LL  GA VNA D  G+T
Sbjct: 65  VLLKNGADVNAVDAIGFTPLHLAAFIGHLE---------IAEVLLKHGADVNAQDKFGKT 115

Query: 489 ALIASAYMGHADIVSSILEYD 509
           A   S   G+ D+   + + +
Sbjct: 116 AFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  127 bits (323), Expect = 1e-34
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 15/146 (10%)

Query: 401 GANINHTD-CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           G++ +H    +    L  A+  G    V++L+ +GADVN  D  G T L  A   GHLE+
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                    V++LL  GA VNA D+ G T L  +A++GH +I   +L++ AD+N QD  G
Sbjct: 63  ---------VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113

Query: 520 RTALSVSALCVPSSDGYAKVVSILLE 545
           +TA  +S       +G   +  IL +
Sbjct: 114 KTAFDISI-----GNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  110 bits (277), Expect = 2e-28
 Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 48/180 (26%)

Query: 546 KGAKVDHED-REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
           +G+   H    +    LL AA  G  D   IL+ N AD +  D+ G TPL+ A + GH  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ 664
            V +LL  GA                    +++                           
Sbjct: 62  IVEVLLKNGA--------------------DVNA-------------------------- 75

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
             D  G+TPLH AA  GH E+   LL+ GA V+  D  G+    ++  +G+  L E+  +
Sbjct: 76  -VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  107 bits (269), Expect = 2e-27
 Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 11/127 (8%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           L +       + ++  L +  A D+   D++G T L +A   G ++ V++LL+ GA++N 
Sbjct: 18  LLEAARAGQDDEVR-ILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            D  G+TPL  A++ GH  + ++LL+ GADVN  D  G+TA   +   G+ +        
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNED-------- 127

Query: 467 CVVKLLL 473
            + ++L 
Sbjct: 128 -LAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  103 bits (260), Expect = 4e-26
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 510 ADIN-QQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEG 568
           +  +    +D    L  +A       G    V IL+  GA V+ +D  G+TPL +A   G
Sbjct: 4   SHHHHHHGSDLGKKLLEAA-----RAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58

Query: 569 HRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLS 628
           H ++ E+LL+N AD + +D  G TPL  AA +GH     +LL  GA V+  D  G+T   
Sbjct: 59  HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118

Query: 629 VAAAQGNIDVVNQLL 643
           ++   GN D+   L 
Sbjct: 119 ISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 97.8 bits (245), Expect = 3e-24
 Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 15/121 (12%)

Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
           ++    L  AA  G  D V  L+  G              ++   +D  G TPL+ A   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANG------------ADVNA--KDEYGLTPLYLATAH 57

Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTA 740
           GH E+   LL+ GA V+ VD  G  PL LAA  GH  + E+ L+   A+VN +   G+TA
Sbjct: 58  GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTA 116

Query: 741 L 741
            
Sbjct: 117 F 117

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 693 GAKVDQVD-NDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL----RVNMKN 747
           G+       +D    L+ AA+ G    V + +    A+VN K   G T L          
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLE 61

Query: 748 VTKL 751
           + ++
Sbjct: 62  IVEV 65

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.9 bits (105), Expect = 3e-05
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
           +AA  GH +   +LL +GAD    D  G+ AF ++  +G+E +  +L++ 
Sbjct: 86  LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.5 bits (104), Expect = 3e-05
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 883 VGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +G+K+  AA+ G +D VR+L+  GAD    D  G     +A   GH E V  LLK  AD
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +A   GH + V +LL  GAD    D  G     +AA  GH E    LLK  AD
Sbjct: 53  LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  130 bits (328), Expect = 6e-34
 Identities = 49/256 (19%), Positives = 77/256 (30%), Gaps = 40/256 (15%)

Query: 486 GRTALIASAYMGHADIVSSILEY----DADIN----QQDNDGRTALSVSALCVPSSDGYA 537
            R  L      G  D +  +L +       +     ++ + G+T L  + L    S G  
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN--LSAGRN 62

Query: 538 KVVSILLEKGAK-----------VDHEDREGMTPLLVAAFEGHRDVCEILLENEAD---- 582
             + ILL+   K                  G T L +A     +   E+L+E  AD    
Sbjct: 63  DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122

Query: 583 ----------QDHIDKSGRTPLWAAASMGHASCVALLL---FWGAYVDTIDAEGRTVLSV 629
                     +      G  PL  AA       V  L       A +   D+ G TVL  
Sbjct: 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182

Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQ--TGSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687
             A  +    N      M    L    +    +  E   +N G +PL  AA  G   + +
Sbjct: 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242

Query: 688 ALLEAGAKVDQVDNDG 703
            ++          +  
Sbjct: 243 HIIRREIADAAAHHHH 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  125 bits (315), Expect = 3e-32
 Identities = 47/236 (19%), Positives = 77/236 (32%), Gaps = 56/236 (23%)

Query: 375 DKHGQTALNVAA---HQGFVDAVQILLEAG-----------ANINHTDCEGWTPLRSASW 420
              G+T L  A      G  D + ILL+             +        G T L  A  
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102

Query: 421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
                 V+LL++ GADV+    G     +                               
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPK----------------------------DEG 134

Query: 481 AADSEGRTALIASAYMGHADIVSSILE---YDADINQQDNDGRTALSVSAL----CVPSS 533
                G   L  +A      IV  + E     AD+ +QD+ G T L            ++
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194

Query: 534 DGYAKVVSILLEKGAKVDHE-------DREGMTPLLVAAFEGHRDVCEILLENEAD 582
               K+  +LL K AK+  +       + +G++PL++AA  G   + + ++  E  
Sbjct: 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 98.7 bits (246), Expect = 5e-23
 Identities = 40/179 (22%), Positives = 57/179 (31%), Gaps = 30/179 (16%)

Query: 590 GRTPLWAAAS----MGHASCVALLLFWGAYVDTIDAE----GRTVLSVAAAQ---GNIDV 638
            R  L+   S     G    ++ LL     +   +      G+T L  A      G  D 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ 698
           +  LLD     G +     +   D       G T LH A     +     L+E GA V  
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDV---YYRGQTALHIAIERRCKHYVELLVEKGADVHA 121

Query: 699 VDN--------------DGRAPLILAAQDGHYHLVEMFLEQ--YEANVNQKSHDGRTAL 741
                             G  PL LAA     H+V    E    +A++ ++   G T L
Sbjct: 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 14/83 (16%)

Query: 340 DSKNQSVLHKLCA-ENNINLLKTFLKSCEALDLE-------------LVDKHGQTALNVA 385
           DS+  +VLH L A  +N      F+     L L              L++  G + L +A
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

Query: 386 AHQGFVDAVQILLEAGANINHTD 408
           A  G +   Q ++          
Sbjct: 233 AKTGKIGIFQHIIRREIADAAAH 255

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  122 bits (309), Expect = 3e-33
 Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 9/102 (8%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
           +G+T L++AA  G ++ V++LLEAGA++N  D  G TPL  A+  GH  VVKLLL++GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH 478
           VN  D  GRT L  AA  GHLE         VVKLLL AGA+
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  104 bits (263), Expect = 4e-27
 Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 14/105 (13%)

Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
           GRT L  AA  GHLEV         VKLLL AGA VNA D  GRT L  +A  GH ++V 
Sbjct: 2   GRTPLHLAARNGHLEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52

Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGA 548
            +LE  AD+N +D +GRT L ++A      +G+ +VV +LLE GA
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 99.7 bits (250), Expect = 3e-25
 Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
           G TPLH AA  GH EV + LLEAGA V+  D +GR PL LAA++GH  +V++ LE   A+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60

Query: 730 VNQKSHDGRTAL 741
           VN K  +GRT L
Sbjct: 61  VNAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 98.6 bits (247), Expect = 6e-25
 Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 5/98 (5%)

Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
           +GRT L ++A      +G+ +VV +LLE GA V+ +D+ G TPL +AA  GH +V ++LL
Sbjct: 1   NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY 615
           E  AD +  DK+GRTPL  AA  GH   V LLL  GAY
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 96.3 bits (241), Expect = 4e-24
 Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 14/103 (13%)

Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           GRT L +AA  G+++VV  LL+ G      A        D   +D  G TPLH AA  GH
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG------A--------DVNAKDKNGRTPLHLAARNGH 47

Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            EV + LLEAGA V+  D +GR PL LAA++GH  +V++ LE 
Sbjct: 48  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.9 bits (240), Expect = 5e-24
 Identities = 50/138 (36%), Positives = 59/138 (42%), Gaps = 47/138 (34%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
           G TPL +AA  GH +V ++LLE  AD +  DK+GRTPL  AA  GH   V LLL  GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
           +                                                +D  G TPLH 
Sbjct: 62  NA-----------------------------------------------KDKNGRTPLHL 74

Query: 677 AAIEGHEEVCRALLEAGA 694
           AA  GH EV + LLEAGA
Sbjct: 75  AARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.9 bits (209), Expect = 8e-20
 Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH      ++ ++K  L    A D+   DK+G+T L++AA  G ++ V++LLEAGA++N 
Sbjct: 6   LHLAARNGHLEVVK-LLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
            D  G TPL  A+  GH  VVKLLL++GA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.0 bits (121), Expect = 7e-08
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           +GR PL LAA++GH  +V++ LE   A+VN K  +GRT L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPL 39

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.7 bits (115), Expect = 4e-07
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
           +AA+ GH + V+LLL  GAD    D  GR    +AA++GH  V++LL
Sbjct: 41  LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.3 bits (114), Expect = 6e-07
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD 940
           +AA+ GH + V+LLL  GAD    D  GR    +AA++GH E V  LL+  AD
Sbjct: 8   LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  122 bits (308), Expect = 5e-33
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 12/119 (10%)

Query: 385 AAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGG 444
            +          L+  G+++     +    L  A+  G    V++L+ +GADV   D  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 445 RTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
            T L  AA  GHLE         VVKLLL AGA V A D  G+TA   S   G+ D+  
Sbjct: 58  STPLHLAARNGHLE---------VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  113 bits (286), Expect = 5e-30
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA 477
            S   H      L+  G+ +  SD      L  AA  G  +          V++L+A GA
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG-SD--LGKKLLEAARAGQDDE---------VRILMANGA 48

Query: 478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA 537
            V A D  G T L  +A  GH ++V  +LE  AD+  QD  G+TA  +S       +G  
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI-----DNGNE 103

Query: 538 KVVSIL 543
            +  IL
Sbjct: 104 DLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  103 bits (260), Expect = 2e-26
 Identities = 34/90 (37%), Positives = 48/90 (53%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           +       L  AA  G  D V+IL+  GA++   D  G TPL  A+  GH  VVKLLL++
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           GADV   D  G+TA   +   G+ ++  +L
Sbjct: 80  GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  103 bits (258), Expect = 3e-26
 Identities = 35/159 (22%), Positives = 49/159 (30%), Gaps = 50/159 (31%)

Query: 564 AAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEG 623
            +   H      L+   +    +       L  AA  G    V +L+  GA V       
Sbjct: 1   GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAA----- 52

Query: 624 RTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE 683
                                                     +D  G TPLH AA  GH 
Sbjct: 53  ------------------------------------------KDKNGSTPLHLAARNGHL 70

Query: 684 EVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
           EV + LLEAGA V   D  G+    ++  +G+  L E+ 
Sbjct: 71  EVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  102 bits (257), Expect = 4e-26
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
           +   H    S ++   + +    +D    L  +A       G    V IL+  GA V  +
Sbjct: 2   SSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAA-----RAGQDDEVRILMANGADVAAK 53

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           D+ G TPL +AA  GH +V ++LLE  AD    DK G+T    +   G+     +L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  100 bits (252), Expect = 2e-25
 Identities = 40/111 (36%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
           SS  +    S L+ +G+ +     +    LL AA  G  D   IL+ N AD    DK+G 
Sbjct: 2   SSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58

Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           TPL  AA  GH   V LLL  GA V   D  G+T   ++   GN D+   L
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 96.1 bits (240), Expect = 8e-24
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)

Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
            ++  +    + L+ RG      +           H  +     L  AA  G ++  R L
Sbjct: 1   GSSHHHHHHSSGLVPRG------S-----------HMGSDLGKKLLEAARAGQDDEVRIL 43

Query: 690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
           +  GA V   D +G  PL LAA++GH  +V++ LE   A+V  +   G+TA  +++ N
Sbjct: 44  MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
            S     L +       + ++  L +  A D+   DK+G T L++AA  G ++ V++LLE
Sbjct: 21  GSDLGKKLLEAARAGQDDEVR-ILMANGA-DVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
           AGA++   D  G T    +   G+  + ++L
Sbjct: 79  AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGH-ETVLRLLKQYAD-DSEYFV 946
            AA+ G +D VR+L+  GAD    D  G     +AA++GH E V  LL+  AD  ++   
Sbjct: 30  EAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89

Query: 947 HYYYYYNSAKSGHETVLRLLK 967
               +  S  +G+E +  +L+
Sbjct: 90  GKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
            +   H      L+  G+    SD         AA++G +  +R+L
Sbjct: 1   GSSHHHHHHSSGLVPRGSH-MGSD--LGKKLLEAARAGQDDEVRIL 43

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 77.5 bits (190), Expect = 4e-15
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 12/204 (5%)

Query: 319 KTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEA-LDLELVDKH 377
             +    +  S        +      ++L +               +  A ++     + 
Sbjct: 175 SIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQD 234

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
             T L  A     + A + LL+ GAN+N  D  G  PL  A+  GH+ +  L L+ GAD+
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
              D  GR  L  A    + +         V  L LA      AA  +         +  
Sbjct: 295 GARDSEGRDPLTIAMETANAD--------IVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346

Query: 498 HADIVSSILEYDADINQQDNDGRT 521
            + + S        ++++ +D  T
Sbjct: 347 FSLMASDD---PEKLSRRSHDLHT 367

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.0 bits (186), Expect = 9e-15
 Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 477 AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ--DNDGRTALSVSALCVPSSD 534
           +    +   G     AS +      ++  L + AD+N      D  T L  +      + 
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT-----AA 245

Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
                   LL+ GA V+  D  G  PL  A   GH  +  + L+  AD    D  GR PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

Query: 595 WAAASMGHASCVALLLF 611
             A    +A  V LL  
Sbjct: 306 TIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 74.4 bits (182), Expect = 4e-14
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 528 LCVPSSDGYAKVVSILLEKGAKVD--HEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
                       ++  L  GA V+  +  ++  TPL+ A        CE LL+N A+ + 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
            D +GR PL  A  +GH     L L  GA +   D+EGR  L++A    N D+V  L   
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

Query: 646 GM 647
            M
Sbjct: 324 KM 325

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 71.0 bits (173), Expect = 5e-13
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 16/162 (9%)

Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA--EGRTVLSVAAAQGN 635
           E  ++       G     A+        +A  L  GA V+ ++   +  T L  A A  +
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247

Query: 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
           +     LL             Q G+ +    D+ G  PLH+A I GH  +    L+ GA 
Sbjct: 248 LLACEFLL-------------QNGA-NVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293

Query: 696 VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDG 737
           +   D++GR PL +A +  +  +V +                
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 70.6 bits (172), Expect = 6e-13
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 466 LCVVKLLLAAGAHVNAADS--EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL 523
           L  +   LA GA VN  +   +  T LI +           +L+  A++NQ D+ GR  L
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272

Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
             + +      G+  +  + L++GA +   D EG  PL +A    + D+  +L   +  +
Sbjct: 273 HHATIL-----GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327

Query: 584 DHIDKS 589
               + 
Sbjct: 328 AEAAQG 333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.2 bits (158), Expect = 4e-11
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG--GRTALRAAAWGGHLEVTIVLGPLCV 468
           G    R++        +   L  GADVN  + G    T L  A              L  
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT---------AANSLLA 250

Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
            + LL  GA+VN ADS GR  L  +  +GH  +    L+  AD+  +D++GR  L++
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
             TPL  A        C  LL+ GA V+Q D+ GR PL  A   GH  L  +FL +  A+
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRGAD 293

Query: 730 VNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFP--LTVEDLFTKFS 782
           +  +  +GR  L + M+         L +  +     +       T  D+F  FS
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
           +  A   GH     L L  GAD    D  GR+   +A ++ +  ++ LL+ 
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.4 bits (185), Expect = 6e-15
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
                TAL ++            +V  L++    +D +  +G T L       + +  ++
Sbjct: 166 HEPDETALHLAVRS--VDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223

Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
           LL  +A  +  ++SG TPL  A  + H  C  LL  
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 72.3 bits (177), Expect = 6e-14
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
            +D   R   I + YM             A       +      +  L    +DG     
Sbjct: 100 GSDMIARKDYITAKYMERR-YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVD--- 155

Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRD---VCEILLENEADQDHIDKSGRTPLWAA 597
              L +   + +      T L +A     R    + + L++N  + D     G T L   
Sbjct: 156 ---LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212

Query: 598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
               +A C+ LLL   A ++  +  G T L +A    +      L 
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 72.0 bits (176), Expect = 9e-14
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 377 HGQTALNVA---AHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
             +TAL++A     +  +  V  L++   N++    +G T L       ++  +KLLL+ 
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
            A +  ++  G T L  A    H     +L
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
                T L +A    +   ++      ++   +           +     G T LHY  +
Sbjct: 166 HEPDETALHLAVRSVDRTSLH------IVDFLVQNSGNLDKQTGK-----GSTALHYCCL 214

Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
             + E  + LL   A ++  +  G  PL +A +  H H  E+  +      N   H
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 19/146 (13%)

Query: 417 SASWGGHSAVVKLLLQSGADVN------CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVK 470
            A        +      G D+              TAL  A              L +V 
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR------TSLHIVD 189

Query: 471 LLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV 530
            L+    +++    +G TAL       +A+ +  +L   A I   +  G T L ++    
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL- 248

Query: 531 PSSDGYAKVVSILLE--KGAKVDHED 554
                +     +L +   G    H  
Sbjct: 249 ----KHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.6 bits (162), Expect = 5e-12
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 18/132 (13%)

Query: 469 VKLLLAAGAHVNA------ADSEGRTAL---IASAYMGHADIVSSILEYDADINQQDNDG 519
           +    A G  +              TAL   + S       IV  +++   ++++Q   G
Sbjct: 146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE- 578
            TAL    L        A+ + +LL   A ++  +  G TPL +A    H    E+L + 
Sbjct: 206 STALHYCCLT-----DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

Query: 579 ---NEADQDHID 587
                    H++
Sbjct: 261 LSGRFNSHVHVE 272

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 340 DSKNQSVLHKLC-AENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
              +++ LH    + +  +L         + +L+     G TAL+        + +++LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
              A+I   +  G TPL  A    H    +LL Q+
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 665 HRDNCGWTPLHYAAIEG---HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           +      T LH A          +   L++    +D+    G   L       +   +++
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223

Query: 722 FLEQYEANVNQKSHDGRTAL 741
            L + +A++   +  G T L
Sbjct: 224 LL-RGKASIEIANESGETPL 242

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSEYF 945
           +       + +C++LLL   A  + ++  G     +A +  HE    LL Q  +      
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268

Query: 946 VHYYYYYN 953
           VH  Y + 
Sbjct: 269 VHVEYEWR 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.7 bits (178), Expect = 6e-14
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 18/130 (13%)

Query: 391 VDAVQILLEAGANIN------HTDCEGWTPLRSASWGGHSA---VVKLLLQSGADVNCSD 441
           + +V      G +                 L  A    + A   +V  ++Q+G  ++   
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223

Query: 442 MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI 501
             G TAL  AA     +          +KLLL   A V   +  G TAL  +    H + 
Sbjct: 224 ADGNTALHYAALYNQPDC---------LKLLLKGRALVGTVNEAGETALDIARKKHHKEC 274

Query: 502 VSSILEYDAD 511
              + +  A 
Sbjct: 275 EELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.7 bits (178), Expect = 7e-14
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
                L ++     ++     +V  +++ G  +D +  +G T L  AA     D  ++LL
Sbjct: 189 PEELVLHLA--VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           +  A    ++++G T L  A    H  C  LL
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 427 VKLLLQSGADVNCSDMG------GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN 480
           V     +G D      G          L  A    +         L +V  ++  G H++
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ------ASLPLVDFIIQNGGHLD 220

Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
           A  ++G TAL  +A     D +  +L+  A +   +  G TAL ++
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.4 bits (172), Expect = 3e-13
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNA------ADSEGRTALIASAYMGHAD 500
           A R       L   I    L  V    A G           A +     L  +  + +  
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 501 ---IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG 557
              +V  I++    ++ +  DG TAL  +AL           + +LL+  A V   +  G
Sbjct: 205 SLPLVDFIIQNGGHLDAKAADGNTALHYAALY-----NQPDCLKLLLKGRALVGTVNEAG 259

Query: 558 MTPLLVAAFEGHRDVCEILLENEADQ----DHID 587
            T L +A  + H++  E+L + +A       H+D
Sbjct: 260 ETALDIARKKHHKECEELLEQAQAGTFAFPLHVD 293

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 69.6 bits (170), Expect = 7e-13
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 377 HGQTALNVA---AHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
             +  L++A   A+Q  +  V  +++ G +++    +G T L  A+       +KLLL+ 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
            A V   +  G TAL  A    H E   +L
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 69.6 bits (170), Expect = 8e-13
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 556 EGMTPLLVAAFEGHRD---VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW 612
                L +A    ++    + + +++N    D     G T L  AA      C+ LLL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
            A V T++  G T L +A  + + +    L
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
            +   G T LHYAA+    +  + LL+  A V  V+  G   L +A +  H    E+  +
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 644 DRGMILGCLAGGRQTG-SLDEQHRDNCGWTPLHYAAIEGHE---EVCRALLEAGAKVDQV 699
           D   +L   A G+  G  L            LH A    ++    +   +++ G  +D  
Sbjct: 163 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 222

Query: 700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
             DG   L  AA       +++ L +  A V   +  G TAL +  K 
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKK 269

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 340 DSKNQSVLHKLC-AENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILL 398
            +  + VLH      N  +L            L+     G TAL+ AA     D +++LL
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 399 EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
           +  A +   +  G T L  A    H    +LL Q+ A 
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSEYF 945
           +  AA     DC++LLL   A     +  G  A  +A K  H+    LL+Q  A    + 
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 289

Query: 946 VH 947
           +H
Sbjct: 290 LH 291

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 2e-12
 Identities = 74/412 (17%), Positives = 140/412 (33%), Gaps = 105/412 (25%)

Query: 9   SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALII-GGPGSGKTTLCKEIVFPSAESSFS 67
           +K    R   ++KL   L      +P  N   ++I G  GSGKT +  ++       S+ 
Sbjct: 127 AKYNVSRLQPYLKLRQALL---ELRPAKN---VLIDGVLGSGKTWVALDVC-----LSYK 175

Query: 68  QQHNLRKKL--LAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKA 125
            Q  +  K+  L    C S +     +Q  +  +   ++S     S   +  +   SI+A
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS---NIKLRIHSIQA 232

Query: 126 LLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID---ETHVTNKKIYSDKATC 182
            L+  +LL+   + ++  L++ L  +++ K       ++ +   +  +T +     K   
Sbjct: 233 ELR--RLLK--SKPYENCLLV-LLNVQNAKA-----WNAFNLSCKILLTTR----FK--- 275

Query: 183 SIADLLARNH--HLF---PPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQ 237
            + D L+     H+                + KS+    L +      DL      R++ 
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTL----TPDEVKSL---LLKYLDCRPQDLP-----REVL 323

Query: 238 QYILLRLAS-EESLRVHMNR-DTAEMLN--QLHIKSNGCFLYLE-----RVLDGISNGLI 288
                RL+   ES+R  +   D  + +N  +L          LE     ++ D     L 
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLS 379

Query: 289 ILREIKDIP-GTLNGLYLWLSQRLLSTKQFLKTKEVSDTPCSDTPVSRITMFDSKNQSVL 347
           +      IP   L+   +W           +   +V              + +      L
Sbjct: 380 VFPPSAHIPTILLS--LIWFD---------VIKSDVMV------------VVNK-----L 411

Query: 348 HK--LCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
           HK  L  +      K    S  ++ LEL     +     A H+  VD   I 
Sbjct: 412 HKYSLVEKQP----KESTISIPSIYLEL---KVKLENEYALHRSIVDHYNIP 456

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 9e-11
 Identities = 91/657 (13%), Positives = 196/657 (29%), Gaps = 188/657 (28%)

Query: 253 HMNRDTAEMLNQLH------------IKSNGCFLYLERVLDGISNGLIILREIKDI---P 297
           HM+ +T E   Q              + +  C    + V D +   ++   EI  I    
Sbjct: 6   HMDFETGEH--QYQYKDILSVFEDAFVDNFDC----KDVQD-MPKSILSKEEIDHIIMSK 58

Query: 298 GTLNGLYL--------------------------WLSQRL--------LSTKQFLKTKEV 323
             ++G                             +L   +        + T+ +++ ++ 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 324 ---SDTPCSDTPVSRITMFDSKNQSVLHKLCAENNINL--LKTFLKSCEALDLELVDKHG 378
               +   +   VSR+  +  K +  L +L    N+ +  +    K+  ALD+  +    
Sbjct: 119 LYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKV 176

Query: 379 QTALNVAAH---QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
           Q  ++           ++ + +LE    + +     WT         HS+ +KL + S  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHS-- 229

Query: 436 DVNCSDMGGRTALRA-AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA 494
                    +  LR       +    +VL  +   K         NA +   +  L+ + 
Sbjct: 230 --------IQAELRRLLKSKPYENCLLVLLNVQNAK-------AWNAFNLSCKI-LLTTR 273

Query: 495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
           +    D +S+       ++   +   T   V +L         K +     +   +  E 
Sbjct: 274 FKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLL-------LKYLDC---RPQDLPREV 322

Query: 555 REGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA--SCVALL--- 609
                P  ++               E+ +D +             +     S + +L   
Sbjct: 323 LTTN-PRRLSII------------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 610 ----LFWGAYV---DT-IDAEGRTVLSV----AAAQGNIDVVNQLLDRGMILGCLAGGRQ 657
               +F    V      I      +LS+          + VVN+L    ++         
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKES 424

Query: 658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDG--- 714
           T S+   + +       +  A+  H    R++++        D+D   P  L   D    
Sbjct: 425 TISIPSIYLELKV-KLENEYAL--H----RSIVDHYNIPKTFDSDDLIPPYL---DQYFY 474

Query: 715 -H--YHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYL----LIQPLLNIILS 767
            H  +HL  +  E  E                    +T     +L    L Q + +   +
Sbjct: 475 SHIGHHLKNI--EHPE-------------------RMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 768 SLFPLTVEDLFTKFSTTNPHISRQE--YKKRL----HILRKIISIANNEHIILFHHS 818
                ++ +   +     P+I   +  Y++ +      L KI      E++I   ++
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-----EENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 3e-07
 Identities = 89/575 (15%), Positives = 159/575 (27%), Gaps = 181/575 (31%)

Query: 500 DIVSSIL---EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG-----AKVD 551
           D+  SIL   E D  I  +D    T      L     +   K V  +L        + + 
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 552 HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRT---PLW----AAASMGHAS 604
            E R+    ++   +   RD     L N  D     K   +   P      A   +  A 
Sbjct: 100 TEQRQ--PSMMTRMYIEQRDR----LYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQ---------GNI------------DVVNQLL 643
            V +    G+        G+T +++               I             V+  L 
Sbjct: 152 NVLIDGVLGS--------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 644 DRGMILGCLAGGRQTGSLDEQHR------------------------DNCGWTPLHYAAI 679
                +      R   S + + R                         N       + A 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAF 262

Query: 680 EGHEEVCRALLEAGAK--VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD- 736
                 C+ LL    K   D +       + L          E+        ++ +  D 
Sbjct: 263 NLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDL 318

Query: 737 GRTALRVN----------MKN-VTKLSFW-YLLIQPLLNIILSSLFPLTVEDLFTKFSTT 784
            R  L  N          +++ +     W ++    L  II SSL       L       
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-----NVL------- 366

Query: 785 NPHISRQEYKKRLHILRKIISIANNEHI------IL-FHHSFSEWLLDVKHCTKRYLCSL 837
            P   R+ + + L +         + HI      ++ F    S+ ++ V    K    SL
Sbjct: 367 EPAEYRKMFDR-LSVFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SL 416

Query: 838 NDGHL------IHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAA 891
            +         I ++ L  + +  +  A+            H  I+              
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYAL------------HRSIV-------------- 450

Query: 892 QEGHEDCVRLLLHYGAD---PKHSD-----HCGRNAFRVAAKSGHETVLRLLKQYADDSE 943
                D   +   + +D   P + D     H G +  +        T+ R++  + D   
Sbjct: 451 -----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMV--FLDFR- 501

Query: 944 YFV-----HYYYYYNSAKSGHETVLRLLKQYADDI 973
            F+     H    +N++ S   T+ + LK Y   I
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYI 534

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 341 SKNQSVLHKLCAENNINLLKTFLKSC---EALDLELVDKHGQTALNVA---AHQGFVDAV 394
            + Q +   +C  + +++L+ F       + L         +  L++A   A+Q  +  V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG 454
             +++ G +++    +G T L  A+       +KLLL+  A V   +  G TAL  A   
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 455 GHLEVTIVL 463
            H E   +L
Sbjct: 251 HHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 64.5 bits (157), Expect = 7e-11
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 513 NQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDV 572
                     L ++     ++     +V  +++ G  +D +  +G T L  AA     D 
Sbjct: 165 PDAQAPEELVLHLA--VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 222

Query: 573 CEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
            ++LL+  A    ++++G T L  A    H  C  LL
Sbjct: 223 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 552 HEDREGMTPLLVAAFEGHRD---VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVAL 608
                    L +A    ++    + + +++N    D     G T L  AA      C+ L
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225

Query: 609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
           LL   A V T++  G T L +A  + + +    L
Sbjct: 226 LLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 415 LRSASWGGHSAVVKLLLQSGADVNCS------DMGGRTALRAAAWGGHLEVTIVLGPLCV 468
           L +A        V     +G D                 L  A    +         L +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ------ASLPL 189

Query: 469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
           V  ++  G H++A  ++G TAL  +A     D +  +L+  A +   +  G TAL ++
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 18/191 (9%)

Query: 10  KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQ 69
           K+   RE    +L   L +   +   +   A ++G PG+GKT   +++        +   
Sbjct: 17  KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKL--------WELY 68

Query: 70  HNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVE---DESIKAL 126
            +       Y     Y   T  +    +SL   F        E  + +VE   +  +   
Sbjct: 69  KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 128

Query: 127 LKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIAD 186
           L  D     + ++    + L     K       +++       V +     +    S   
Sbjct: 129 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVI-------VGHNDAVLNNLDPSTRG 181

Query: 187 LLARNHHLFPP 197
           ++ +    F P
Sbjct: 182 IMGKYVIRFSP 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	978
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.8
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.79
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.78
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.73
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.59
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.55
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.75
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.74
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.64
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.64
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.55
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.52
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.43
2fna_A	357	Conserved hypothetical protein; structural genomic	98.43
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.43
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.39
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.39
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.29
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.28
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.25
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.22
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.2
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.19
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.13
3bos_A	242	Putative DNA replication factor; P-loop containing	98.05
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.02
3pvs_A	447	Replication-associated recombination protein A; ma	98.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.99
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.96
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.94
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.86
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.85
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	97.85
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.76
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.74
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.73
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.71
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.66
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.64
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.6
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.57
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.57
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.53
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.51
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.5
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.45
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.44
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.43
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.4
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.39
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.38
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.37
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.35
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.31
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.3
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.29
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.28
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.21
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.18
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.11
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.99
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.9
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.79
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.71
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.71
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.67
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.64
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.44
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.42
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.41
2qgz_A	308	Helicase loader, putative primosome component; str	96.4
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.3
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.22
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.16
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.08
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.03
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.03
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.97
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.84
3co5_A	143	Putative two-component system transcriptional RES	95.8
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.78
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.7
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.65
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.59
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.52
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.33
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.12
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.09
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.95
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.92
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.9
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.86
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.79
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.79
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.79
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.71
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.7
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.61
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.61
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.6
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.57
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.57
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.56
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.56
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.51
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.47
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.47
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.44
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.42
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.42
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.39
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.35
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.33
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.32
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.31
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.31
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.3
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.26
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.25
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.24
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.23
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.17
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.13
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.08
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.06
1via_A	175	Shikimate kinase; structural genomics, transferase	94.05
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.02
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.01
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.0
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.98
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.98
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.93
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.9
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	93.85
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.81
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.81
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.78
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.76
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.76
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.74
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.73
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.71
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.64
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.63
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.61
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.59
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.55
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.54
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.53
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.53
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.53
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.49
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.43
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.42
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.42
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.4
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.31
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.27
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	93.23
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.11
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.1
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	93.09
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.08
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.05
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	93.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.98
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	92.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	92.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.89
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	92.83
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	92.82
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.73
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.69
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	92.55
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	92.5
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.49
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.48
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	92.48
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	92.47
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.44
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	92.43
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	92.41
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	92.4
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	92.37
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	92.36
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	92.34
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	92.33
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	92.31
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.29
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	92.29
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	92.25
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	92.25
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	92.25
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	92.23
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.21
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	92.19
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	92.14
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	92.14
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	92.11
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	92.1
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.07
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	92.05
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	91.99
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	91.9
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	91.83
2r6a_A	454	DNAB helicase, replicative helicase; replication,	91.77
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	91.76
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	91.66
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	91.58
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	91.51
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	91.45
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	91.28
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	91.26
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	91.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	91.14
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	91.07
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	91.02
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.81
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	90.78
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	90.73
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	90.69
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	90.62
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	90.6
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	90.6
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	90.53
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	90.53
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	90.52
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	90.44
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	90.42
2cvh_A	220	DNA repair and recombination protein RADB; filamen	90.36
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	90.33
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	90.32
4a74_A	231	DNA repair and recombination protein RADA; hydrola	90.32
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	90.28
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	90.21
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	90.19
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	90.05
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	89.96
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	89.94
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	89.93
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	89.91
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	89.89
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	89.89
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	89.86
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	89.69
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	89.65
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	89.48
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	89.43
2eyu_A	261	Twitching motility protein PILT; pilus retraction	89.29
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	89.25
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.12
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	89.11
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	89.05
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	88.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	88.79
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	88.76
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	88.75
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	88.69
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	88.65
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	88.57
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	88.57
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	88.46
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	88.43
1u94_A	356	RECA protein, recombinase A; homologous recombinat	88.43
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	88.41
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	88.37
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	88.22
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	88.07
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	88.05
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	88.03
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	87.98
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	87.89
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	87.78
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	87.78
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	87.74
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	87.7
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	87.57
2z43_A	324	DNA repair and recombination protein RADA; archaea	87.56
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	87.55
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	87.52
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	87.39
1b0u_A	262	Histidine permease; ABC transporter, transport pro	87.39
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	87.34
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	87.32
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	87.31
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	87.31
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	87.25
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	87.2
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	87.15
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	87.09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	87.09
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	87.08
2ghi_A	260	Transport protein; multidrug resistance protein, M	87.07
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	87.03
1ji0_A	240	ABC transporter; ATP binding protein, structural g	86.9
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	86.89
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	86.84
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	86.66
1g6h_A	257	High-affinity branched-chain amino acid transport	86.53
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	86.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	86.45
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	86.39
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	86.36
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	86.36
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	86.28
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	86.14
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	86.13
2og2_A	359	Putative signal recognition particle receptor; nuc	85.87
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	85.85
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	85.84
2ewv_A	372	Twitching motility protein PILT; pilus retraction	85.7
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	85.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	85.66
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	85.6
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	85.49
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	85.38
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	85.34
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	85.34
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	85.1
3kta_A	182	Chromosome segregation protein SMC; structural mai	85.06
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	84.99
1xp8_A	366	RECA protein, recombinase A; recombination, radior	84.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	84.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	84.62
2ged_A	193	SR-beta, signal recognition particle receptor beta	84.52
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	84.51
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	84.45
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	84.41
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	84.36
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	84.29
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	84.17
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	84.03
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	84.03
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	84.01
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	83.99
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	83.96
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	83.76
2xxa_A	433	Signal recognition particle protein; protein trans	83.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	83.65
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	83.51
2hf9_A	226	Probable hydrogenase nickel incorporation protein	83.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	83.27
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	83.27
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	82.99
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	82.94
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	82.76
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	82.53
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	82.51
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	82.48
3io5_A	333	Recombination and repair protein; storage dimer, i	82.48
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	82.33
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	82.32
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	82.19
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	82.11
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	82.09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	82.07
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	82.06
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	81.99
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	81.97
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	81.93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	81.74
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	81.35
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	81.27
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	81.24
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	81.22
2wji_A	165	Ferrous iron transport protein B homolog; membrane	81.2
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	81.16
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	81.04
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	81.01
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	80.9
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	80.75
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	80.43
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	80.36
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	80.05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.4e-58  Score=520.35  Aligned_cols=396  Identities=30%  Similarity=0.392  Sum_probs=226.0

Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384         368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA  447 (978)
Q Consensus       368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~  447 (978)
                      |++++..+..|.||||+||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~   83 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP   83 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384         448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA  527 (978)
Q Consensus       448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  527 (978)
                      ||+|+..|+.++         +++|+++|++++..+..|.|||++|+..|+.+++++|++++++.+..+..|.|||++|+
T Consensus        84 L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  154 (437)
T 1n11_A           84 LHCAARIGHTNM---------VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA  154 (437)
T ss_dssp             HHHHHHHTCHHH---------HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             HHHHHHCCCHHH---------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence            555555555555         55555555555555555555555555555555555555555555555555555555555


Q ss_pred             hccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHH
Q psy9384         528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA  607 (978)
Q Consensus       528 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~  607 (978)
                           ..++.+++++|++.|++++..+..|.|||+.|+..++.+++++|+++|++++..+..|.||||.|+..++.++++
T Consensus       155 -----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  229 (437)
T 1n11_A          155 -----KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR  229 (437)
T ss_dssp             -----HTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             -----HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence                 445555555555555555555555555666666655666666666555555555555555666666656666666


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHH
Q psy9384         608 LLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCR  687 (978)
Q Consensus       608 ~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  687 (978)
                      +|++.|++++..+..|.||||+|+..|+.+++++|+++|              .+++..+..|.||||+|+..|+.++++
T Consensus       230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~  295 (437)
T 1n11_A          230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--------------ANGNLGNKSGLTPLHLVAQEGHVPVAD  295 (437)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--------------CCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            666555555555555556666666666666666665555              445555555556666666666666666


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHh
Q psy9384         688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILS  767 (978)
Q Consensus       688 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~  767 (978)
                      +|+++|++++..+..|.||||+|+..|+.++|++|+++ |++++.++..|.||||+|+     ..++.+++++|+    +
T Consensus       296 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~-----~~g~~~iv~~Ll----~  365 (437)
T 1n11_A          296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAA-----QQGHTDIVTLLL----K  365 (437)
T ss_dssp             HHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHH----H
T ss_pred             HHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHH-----HCChHHHHHHHH----H
Confidence            66665655555555556666666666666666666554 5555555555666666665     555556666665    5


Q ss_pred             cCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHh
Q psy9384         768 SLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISI  806 (978)
Q Consensus       768 ~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~  806 (978)
                      +|     ++++..+..|.||++.|...|+.+++++|...
T Consensus       366 ~g-----a~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~  399 (437)
T 1n11_A          366 NG-----ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  399 (437)
T ss_dssp             TT-----CCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             Cc-----CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence            55     55555555555666555555555555555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.1e-58  Score=517.73  Aligned_cols=392  Identities=30%  Similarity=0.386  Sum_probs=374.8

Q ss_pred             ccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384         335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP  414 (978)
Q Consensus       335 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  414 (978)
                      .++..+..|.||||+|+..|++++|++|++  .+.+++..+..|.||||+||..|+.++|++|++.|++++.++..|.||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~   83 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP   83 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHH--TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence            456678899999999999999999999999  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy9384         415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA  494 (978)
Q Consensus       415 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~  494 (978)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|++.+++.+..+..|.|||++|+
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~g~t~L~~A~  154 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET---------VLALLEKEASQACMTKKGFTPLHVAA  154 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH---------HHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999         99999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy9384         495 YMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE  574 (978)
Q Consensus       495 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~  574 (978)
                      ..|+.+++++|+++|++++..+..|.|||++|+     ..++.+++++|++.|.+++..+..|.|||++|+..|+.++++
T Consensus       155 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  229 (437)
T 1n11_A          155 KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV-----HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR  229 (437)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHH-----HTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999     789999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccC
Q psy9384         575 ILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAG  654 (978)
Q Consensus       575 ~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~  654 (978)
                      +|++.|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|        
T Consensus       230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--------  301 (437)
T 1n11_A          230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG--------  301 (437)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT--------
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             CCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCC
Q psy9384         655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS  734 (978)
Q Consensus       655 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~  734 (978)
                            .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++ |++++.+|
T Consensus       302 ------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~  374 (437)
T 1n11_A          302 ------VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVS  374 (437)
T ss_dssp             ------CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCC
T ss_pred             ------ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCC
Confidence                  78888999999999999999999999999999999999999999999999999999999999997 99999999


Q ss_pred             CCCCcHHHHHHhcccchhHHHHHHHHHH
Q psy9384         735 HDGRTALRVNMKNVTKLSFWYLLIQPLL  762 (978)
Q Consensus       735 ~~g~t~L~~a~~~~~~~~~~~~~~~~Ll  762 (978)
                      .+|.|||++|.     ..++.+++++|.
T Consensus       375 ~~g~t~l~~A~-----~~g~~~~~~~l~  397 (437)
T 1n11_A          375 SDGTTPLAIAK-----RLGYISVTDVLK  397 (437)
T ss_dssp             SSSCCHHHHHH-----HTTCHHHHHHHH
T ss_pred             CCCCCHHHHHH-----HcCcHHHHHHHH
Confidence            99999999999     889999999987

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.2e-41  Score=368.48  Aligned_cols=301  Identities=30%  Similarity=0.392  Sum_probs=266.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDC-EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG  455 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  455 (978)
                      .|.|+||.||+.|+.++|++|+++|+++|.++. .|+||||+|+..|+.++|++|+++|++++..+..+.++++.++..+
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            467899999999999999999999999998875 4899999999999999999999999999999999999999999999


Q ss_pred             CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC
Q psy9384         456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG  535 (978)
Q Consensus       456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  535 (978)
                      ...+         +..++..+++++..+..|.||+++|+..|+.+++++|+++|++++.......               
T Consensus       104 ~~~~---------~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~---------------  159 (337)
T 4g8k_A          104 SVKL---------LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE---------------  159 (337)
T ss_dssp             CHHH---------HHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----------------
T ss_pred             cchh---------hHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc---------------
Confidence            9988         9999999999999999999999999999999999999999998876543221               


Q ss_pred             hHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccCCCCCCCcHHHHHHHcCC----HHHHHHHH
Q psy9384         536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE-NEADQDHIDKSGRTPLWAAASMGH----ASCVALLL  610 (978)
Q Consensus       536 ~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~----~~~v~~Ll  610 (978)
                                   +....+..|.||||+|+..|+.+++++|++ .|++++..+..|.++++.++..+.    ..++++|+
T Consensus       160 -------------~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl  226 (337)
T 4g8k_A          160 -------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL  226 (337)
T ss_dssp             -----------------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHH
T ss_pred             -------------ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHH
Confidence                         123345678899999999999999999995 599999999999999998776543    46889999


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHH
Q psy9384         611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL  690 (978)
Q Consensus       611 ~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  690 (978)
                      ++|++++.++..|.||||+|+..|+.+++++|++.+.             .+++.+|..|+||||+|+..|+.+++++|+
T Consensus       227 ~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~-------------~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll  293 (337)
T 4g8k_A          227 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH-------------IEINDTDSDGKTALLLAVELKLKKIAELLC  293 (337)
T ss_dssp             HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT-------------CCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC-------------CcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999998631             788899999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCC
Q psy9384         691 EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQK  733 (978)
Q Consensus       691 ~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~  733 (978)
                      ++|+++|..     +|||+|+++|+.++|++|+++ |+++|..
T Consensus       294 ~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~  330 (337)
T 4g8k_A          294 KRGASTDCG-----DLVMTARRNYDHSLVKVLLSH-GAKEDFH  330 (337)
T ss_dssp             TTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHT-TCCC---
T ss_pred             HCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHC-cCCCCCC
Confidence            999998754     599999999999999999998 9998864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1e-39  Score=355.37  Aligned_cols=290  Identities=30%  Similarity=0.426  Sum_probs=269.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDK-HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW  420 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  420 (978)
                      .|.|+|+.|+..|++++|++|++  .|++++..+. .|+||||+||..|+.++|++|+++|++++..+..+.++++.++.
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~--~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHH--CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            46799999999999999999999  8999998875 59999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCccc----------CCCCCcHH
Q psy9384         421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA----------DSEGRTAL  490 (978)
Q Consensus       421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~----------~~~~~t~L  490 (978)
                      .+...++..++..+++++..+..|.||+++|+..|+.++         +++|+++|++++..          +..|.|||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~---------~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L  172 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKEDQERLRKGGATAL  172 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHH---------HHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence            999999999999999999999999999999999999999         99999999988754          34588999


Q ss_pred             HHHHHcCCHHHHHHHHH-cCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384         491 IASAYMGHADIVSSILE-YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH  569 (978)
Q Consensus       491 ~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~  569 (978)
                      |+|+..|+.++|++|++ .|++++..+..|.++++.++... ...+...++++|+++|++++.++..|.||||+|+..|+
T Consensus       173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence            99999999999999996 59999999999999998876432 23455678999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCc
Q psy9384         570 RDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMI  648 (978)
Q Consensus       570 ~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~  648 (978)
                      .+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++.     .+||++|+..|+.++|++|+++|++
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAK  326 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            9999999985 899999999999999999999999999999999998875     4599999999999999999999954

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.7e-40  Score=358.92  Aligned_cols=325  Identities=29%  Similarity=0.303  Sum_probs=265.3

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384         373 LVDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA  451 (978)
Q Consensus       373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A  451 (978)
                      ..+..+.++||.||..|+.+.|+.|+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             eeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            3455667888888888888888877764 778888888888888888888888888888888888888888888888888


Q ss_pred             HhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccC
Q psy9384         452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP  531 (978)
Q Consensus       452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  531 (978)
                      +..|+.++         +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..+.++++.++    
T Consensus        99 ~~~g~~~i---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~----  165 (351)
T 3utm_A           99 CSYGHYEV---------TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP----  165 (351)
T ss_dssp             HHTTCHHH---------HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS----
T ss_pred             HHCCCHHH---------HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHh----
Confidence            88888888         88888888888888888888888888888888888888888888888888888888887    


Q ss_pred             CCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHc---CCHHHHHH
Q psy9384         532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM---GHASCVAL  608 (978)
Q Consensus       532 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~---~~~~~v~~  608 (978)
                       ..+..+.+.+....            .++..++..++.+.++.++..+......+..+.||||.|+..   +..+++++
T Consensus       166 -~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~  232 (351)
T 3utm_A          166 -TPELRERLTYEFKG------------HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL  232 (351)
T ss_dssp             -SHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHH
T ss_pred             -hhhhHHHHHhhhcc------------cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHH
Confidence             55666666665532            477888889999999988887766666777889999999998   55899999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHH
Q psy9384         609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRA  688 (978)
Q Consensus       609 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  688 (978)
                      |++.|++++..+..|.||||+|+..|+.+++++|+++|              .+++.++..|+||||+|+..|+.+++++
T Consensus       233 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--------------a~~n~~d~~g~t~L~~A~~~~~~~~v~~  298 (351)
T 3utm_A          233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG--------------AKMNALDSLGQTALHRAALAGHLQTCRL  298 (351)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--------------CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--------------CCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99999999999999999999999999999999999999              7888899999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384         689 LLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNM  745 (978)
Q Consensus       689 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~  745 (978)
                      |+++|++++..|..|.||+++|    +.+++++|.+..+    .....+.+++..|+
T Consensus       299 Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~----~~~~~~~~~l~~A~  347 (351)
T 3utm_A          299 LLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTP----MRTSDVDYRLLEAS  347 (351)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC--------------------
T ss_pred             HHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhccc----cccCcceeehhhhh
Confidence            9999999999999999999986    6788888888622    23345667888887

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-39  Score=356.98  Aligned_cols=331  Identities=27%  Similarity=0.291  Sum_probs=284.5

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9384         337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR  416 (978)
Q Consensus       337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~  416 (978)
                      ...+..+.++|+.|+..|+.+.++.++.. .+.+++..|..|.||||+||..|+.++|++|+++|++++..+..|.||||
T Consensus        18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             eeeccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            33455678999999999999999999984 57888999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q psy9384         417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM  496 (978)
Q Consensus       417 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~  496 (978)
                      +|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..+.+|++.|+..
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~~~l~~a~~~  167 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV---------CSLLLSHGADPTLVNCHGKSAVDMAPTP  167 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHCSSH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCccccCCCCcchHHHhhh
Confidence            9999999999999999999999999999999999999999999         9999999999999999999999999998


Q ss_pred             CCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHH
Q psy9384         497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFE---GHRDVC  573 (978)
Q Consensus       497 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~---~~~~iv  573 (978)
                      +..+.+.+....            .++..++     ..+..+.+..++..+......+..+.||||.|+..   +..+++
T Consensus       168 ~~~~~~~~~~~~------------~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~  230 (351)
T 3utm_A          168 ELRERLTYEFKG------------HSLLQAA-----READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA  230 (351)
T ss_dssp             HHHHHHHHHHHH------------HHHHHHH-----HTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHH
T ss_pred             hhHHHHHhhhcc------------cHHHHHH-----HhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHH
Confidence            888888887643            3444455     46677788888877766666778899999999999   558999


Q ss_pred             HHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccc
Q psy9384         574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLA  653 (978)
Q Consensus       574 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~  653 (978)
                      ++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|       
T Consensus       231 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-------  303 (351)
T 3utm_A          231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG-------  303 (351)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-------
T ss_pred             HHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             CCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q psy9384         654 GGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH  715 (978)
Q Consensus       654 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  715 (978)
                             .+++.++..|.||+++|    ..+++++|.+.+..   ....+.+++..|+++|+
T Consensus       304 -------ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~~gd  351 (351)
T 3utm_A          304 -------SDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASKAGD  351 (351)
T ss_dssp             -------CCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred             -------CCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhccCC
Confidence                   78889999999999987    77899999987653   23457788988888773

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.4e-38  Score=332.33  Aligned_cols=267  Identities=31%  Similarity=0.437  Sum_probs=246.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCcccc-CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELV-DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW  420 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  420 (978)
                      .|.++|+.|+..|+++++++|++  .+.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            46799999999999999999999  78888877 7889999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCccc----------CCCCCcHH
Q psy9384         421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA----------DSEGRTAL  490 (978)
Q Consensus       421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~----------~~~~~t~L  490 (978)
                      .|+.+++++|+++|++++..+..|.|||++|+..|+.++         +++|+++|++++..          +..|.|||
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHH---------HHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence            999999999999999999999999999999999999999         99999999999877          77899999


Q ss_pred             HHHHHcCCHHHHHHHHHc-CCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384         491 IASAYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH  569 (978)
Q Consensus       491 ~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~  569 (978)
                      +.|+..|+.+++++|+++ |++++..+..|.|||+.|+.... .....+++++|++.|++++..+..|.||||+|+..|+
T Consensus       153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD-DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC-TTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc-cchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            999999999999999997 99999999999999999984211 1122889999999999999999999999999999999


Q ss_pred             HHHHHHHHh-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccC
Q psy9384         570 RDVCEILLE-NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID  620 (978)
Q Consensus       570 ~~iv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  620 (978)
                      .+++++|++ .|++++..+..|.|||++|+..++.+++++|+++|++++.+|
T Consensus       232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            999999998 799999999999999999999999999999999999988765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.8e-38  Score=332.18  Aligned_cols=257  Identities=33%  Similarity=0.446  Sum_probs=248.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHT-DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG  455 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  455 (978)
                      .|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            4689999999999999999999999999988 788999999999999999999999999999999999999999999999


Q ss_pred             CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccC----------CCCCCChhhh
Q psy9384         456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ----------DNDGRTALSV  525 (978)
Q Consensus       456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------~~~~~t~l~~  525 (978)
                      +.++         +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..          +..+.|||+.
T Consensus        84 ~~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T 1wdy_A           84 SVKL---------LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             CHHH---------HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             CHHH---------HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHH
Confidence            9999         99999999999999999999999999999999999999999999877          6789999999


Q ss_pred             hhhccCCCCChHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCccCCCCCCCcHHHHHHHc
Q psy9384         526 SALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGH----RDVCEILLENEADQDHIDKSGRTPLWAAASM  600 (978)
Q Consensus       526 a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~----~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~  600 (978)
                      |+     ..++.+++++|++. |.+++..+..|.|||+.|+..++    .+++++|+++|++++..+..|.||||+|+..
T Consensus       155 A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          155 AA-----EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HH-----HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred             HH-----HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            99     67899999999998 99999999999999999999999    9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHH-CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9384         601 GHASCVALLLF-WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM  647 (978)
Q Consensus       601 ~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~  647 (978)
                      ++.+++++|++ .|++++..+..|.||||+|+..++.+++++|+++|+
T Consensus       230 ~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999999999 899999999999999999999999999999999993

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-37  Score=339.89  Aligned_cols=326  Identities=25%  Similarity=0.277  Sum_probs=190.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      .+|..++..|+.+.++.+++  ....+.    ...+++.-+...|..+++++++..     ..+..|.||||+|+..+. 
T Consensus        39 ~~l~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-  106 (373)
T 2fo1_E           39 HSLLEASYDGYIKRQRNELQ--HYSLYP----NPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY-  106 (373)
T ss_dssp             ------------------------------------------------------------------CCCHHHHHHHSSS-
T ss_pred             cccccccCCccccchhhhhh--hhcccc----CccccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcCCc-
Confidence            45677777888888888877  232221    223456778888999999998764     457789999999999654 


Q ss_pred             HHHHHHHhCCCCCCcCC-CCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSD-MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS  503 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~  503 (978)
                      +++++|+.  .+++..+ ..|.||||+|+..|+.++++.+-. ..++.|++.|+++|..+..|.||||+|+..|+.++++
T Consensus       107 ~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~-~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~  183 (373)
T 2fo1_E          107 AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV-HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA  183 (373)
T ss_dssp             CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHH-HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHH-HHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHH
Confidence            88888865  4677777 689999999999999999332210 0123344778888877778888888888888888888


Q ss_pred             HHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHcC---CHHHHHHHH
Q psy9384         504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG---AKVDHEDREGMTPLLVAAFEG---HRDVCEILL  577 (978)
Q Consensus       504 ~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g---~~~~~~~~~~~t~L~~a~~~~---~~~iv~~Ll  577 (978)
                      +|+++|++++..+..|.|||++|+     ..++.+++++|++.+   .+++..+..|.|||++|+..+   +.+++++|+
T Consensus       184 ~Ll~~ga~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          184 YLMKAGADPTIYNKSERSALHQAA-----ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV  258 (373)
T ss_dssp             HHHHTTCCSCCCCTTCCCHHHHHH-----HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             HHHHCCCCCcccCCCCCCHHHHHH-----HCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence            887777777666666666666665     445555666665555   455555555555555555554   455555555


Q ss_pred             hCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCC
Q psy9384         578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQ  657 (978)
Q Consensus       578 ~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~  657 (978)
                      ++|++++..+.                         ...+..+..|.||||+|+..|+.+++++|++++.          
T Consensus       259 ~~g~~~~~~~~-------------------------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------  303 (373)
T 2fo1_E          259 EKGAKVDYDGA-------------------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG----------  303 (373)
T ss_dssp             HHTCCSSCCSG-------------------------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC----------
T ss_pred             HCCCCcccccc-------------------------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC----------
Confidence            55555443210                         0012245677888888888888888888887642          


Q ss_pred             CCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCC
Q psy9384         658 TGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN  729 (978)
Q Consensus       658 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~  729 (978)
                         .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+.+|+.+++++|+++ +++
T Consensus       304 ---~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~  371 (373)
T 2fo1_E          304 ---SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE  371 (373)
T ss_dssp             ---CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred             ---CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence               56777788888888888888888888888888888888888888888888888888888888875 543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-37  Score=339.35  Aligned_cols=322  Identities=21%  Similarity=0.262  Sum_probs=236.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384         379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE  458 (978)
Q Consensus       379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  458 (978)
                      ..+|..|+..|+.+.++.++++...+.    .-.+++.-+...|+++++++++...     .+..|.||||+|+..+ .+
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~Aa~~~-~~  107 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTEAAGS-YA  107 (373)
T ss_dssp             -----------------------------------------------------------------CCCHHHHHHHSS-SC
T ss_pred             ccccccccCCccccchhhhhhhhcccc----CccccCCCCCccccccccccccccC-----CCCCCccHHHHHhcCC-ch
Confidence            445777778899999999988765543    2234667788889999999987653     4667899999999965 46


Q ss_pred             eeeeccchHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChH
Q psy9384         459 VTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA  537 (978)
Q Consensus       459 i~~~~~~~~vv~~Ll~~g~~~~~~~-~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~  537 (978)
                      +         +++|+.  .+++..+ ..|.||||+|+..|+.+++++|+..                             
T Consensus       108 ~---------~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-----------------------------  147 (373)
T 2fo1_E          108 I---------TEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH-----------------------------  147 (373)
T ss_dssp             C---------CSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHH-----------------------------
T ss_pred             H---------HHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHH-----------------------------
Confidence            7         666654  5677777 7899999999999999998888743                             


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---C
Q psy9384         538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG---A  614 (978)
Q Consensus       538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g---~  614 (978)
                       .++.|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+   +
T Consensus       148 -~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  226 (373)
T 2fo1_E          148 -EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  226 (373)
T ss_dssp             -HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             -HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence             346788899999999999999999999999999999999999999999999999999999999999999999988   7


Q ss_pred             CCcccCCCCCcHHHHHHHcC---CHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHh
Q psy9384         615 YVDTIDAEGRTVLSVAAAQG---NIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE  691 (978)
Q Consensus       615 ~~~~~~~~~~t~L~~A~~~~---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  691 (978)
                      +++..+..|.||||+|+..+   +.+++++|+++|.+++...      ....+..+..|.||||+|+..|+.+++++|++
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  300 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG------AARKDSEKYKGRTALHYAAQVSNMPIVKYLVG  300 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS------GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccc------ccccCcccccCCCHHHHHHHhCCHHHHHHHHH
Confidence            88999999999999999988   8999999999998764321      12244577889999999999999999999998


Q ss_pred             CC-CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHH
Q psy9384         692 AG-AKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLN  763 (978)
Q Consensus       692 ~g-~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~  763 (978)
                      +| ++++..|..|.||||+|+..|+.++|++|+++ |++++.+|..|.|||++|+     ..++.+++++|++
T Consensus       301 ~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~-----~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQ-----ANNHHNIVDIFDR  367 (373)
T ss_dssp             HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHH-----HTTCHHHHHHHHT
T ss_pred             hcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHH-----HcCCHHHHHHHHh
Confidence            86 99999999999999999999999999999997 9999999999999999999     8999999999974

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=316.50  Aligned_cols=259  Identities=23%  Similarity=0.289  Sum_probs=187.3

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHhc---------cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC
Q psy9384         340 DSKNQSVLHKLCAENNINLLKTFLKSC---------EALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCE  410 (978)
Q Consensus       340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~---------~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  410 (978)
                      ...|.|++|+|+..|+.+.+..++...         .....+..+..|+||||+||..|+.++|++|++.|++++..|..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            356788999999999987777765421         01235567888999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHH
Q psy9384         411 GWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTAL  490 (978)
Q Consensus       411 ~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L  490 (978)
                      |.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.++         +++|+++|++++..+ .|.|||
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~-~g~t~L  161 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC---------VNLLLQHGASVQPES-DLASPI  161 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCSSCSC-TTSCHH
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHH---------HHHHHHCCCCCCCCC-CCCCHH
Confidence            9999999999999999999999999999888899999999999999888         999999998887544 488999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy9384         491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR  570 (978)
Q Consensus       491 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~  570 (978)
                      ++|+..|+.+++++|+++|++++..+..|.|||++|+     ..++.+++++|++.|++++. +..|.||||+|+..++.
T Consensus       162 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~  235 (285)
T 3d9h_A          162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC-----ENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE  235 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH-----HTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH-----HcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH
Confidence            9999999999999999888888888877888887777     56777777777777777774 66677777777777777


Q ss_pred             HHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCC
Q psy9384         571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFW-GAYV  616 (978)
Q Consensus       571 ~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~  616 (978)
                      +++++|+++|++++..+..|.|||++|+  ++.+++++|+++ |+++
T Consensus       236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          236 ELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence            7777777777777777777777777777  345677777766 5544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=313.95  Aligned_cols=253  Identities=26%  Similarity=0.369  Sum_probs=214.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCC-----------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q psy9384         375 DKHGQTALNVAAHQGFVDAVQILLEAG-----------ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG  443 (978)
Q Consensus       375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g-----------~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~  443 (978)
                      ...|.|+||+|+..|+.+.+..++..+           ..++..+..|+||||+|+..|+.+++++|++.|++++..+..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            356899999999999987777766543           235677889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChh
Q psy9384         444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTAL  523 (978)
Q Consensus       444 ~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  523 (978)
                      |.||||+|+..|+.++         +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+ .|.|||
T Consensus        92 g~t~L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L  161 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSC---------VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPI  161 (285)
T ss_dssp             CCCHHHHHHHTTCHHH---------HHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHH
T ss_pred             CCCHHHHHHHCCcHHH---------HHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHH
Confidence            9999999999999999         999999999999999999999999999999999999999999988654 499999


Q ss_pred             hhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCH
Q psy9384         524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA  603 (978)
Q Consensus       524 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~  603 (978)
                      ++|+     ..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++. +..|.||||+|+..++.
T Consensus       162 ~~A~-----~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~  235 (285)
T 3d9h_A          162 HEAA-----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE  235 (285)
T ss_dssp             HHHH-----HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH
T ss_pred             HHHH-----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH
Confidence            9999     67999999999999999999999999999999999999999999999999995 88899999999999999


Q ss_pred             HHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9384         604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR  645 (978)
Q Consensus       604 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~  645 (978)
                      +++++|+++|++++.++..|.|||++|+  ++.+++++|+++
T Consensus       236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          236 ELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            9999999999999999999999999999  567999999998

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.2e-35  Score=302.85  Aligned_cols=226  Identities=30%  Similarity=0.386  Sum_probs=91.8

Q ss_pred             ccccCCCCCcHHHHHHHhC-------------CHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy9384         371 LELVDKHGQTALNVAAHQG-------------FVDAVQILLEAGANINH-TDCEGWTPLRSASWGGHSAVVKLLLQSGAD  436 (978)
Q Consensus       371 ~~~~~~~~~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~  436 (978)
                      ++.+|..|.||||+|+..|             +.+++++|++.|++++. .|..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3444555555555555544             45555555555555432 244555555555555555555555555555


Q ss_pred             CCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCC-CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccC
Q psy9384         437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQ  515 (978)
Q Consensus       437 ~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  515 (978)
                      ++..+..|.||||+|+..|+.++         +++|+++|+ +++..+..|.|||++|+..|+.+++++|+++|++++..
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  153 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGV---------FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV  153 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHH---------HHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc
Confidence            55555555555555555555555         555555544 44445555555555555555555555555555444444


Q ss_pred             CCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHH
Q psy9384         516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLW  595 (978)
Q Consensus       516 ~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~  595 (978)
                      +..|.||||+|+     ..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||++
T Consensus       154 d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  228 (253)
T 1yyh_A          154 DDLGKSALHWAA-----AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  228 (253)
T ss_dssp             CTTSCBHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence            444444444443     233344444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHcCCHHHHHHHH
Q psy9384         596 AAASMGHASCVALLL  610 (978)
Q Consensus       596 ~A~~~~~~~~v~~Ll  610 (978)
                      +|+..|+.+++++|.
T Consensus       229 ~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          229 IAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH
Confidence            444444444444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.3e-36  Score=329.25  Aligned_cols=263  Identities=21%  Similarity=0.206  Sum_probs=232.1

Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384         368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA  447 (978)
Q Consensus       368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~  447 (978)
                      +.+.+..|..|.||||+||..|+.++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|++++.  ..|.||
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~   87 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP   87 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH
Confidence            345566778888999999999999999999999988888888899999999999999999999998886553  467889


Q ss_pred             HHHHHhcCCceeeeeccchHHHHHHHHc----CCCCcc-----------------cCCCCCcHHHHHHHcC--CHHHHHH
Q psy9384         448 LRAAAWGGHLEVTIVLGPLCVVKLLLAA----GAHVNA-----------------ADSEGRTALIASAYMG--HADIVSS  504 (978)
Q Consensus       448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~----g~~~~~-----------------~~~~~~t~L~~A~~~~--~~~~v~~  504 (978)
                      ||+|+..|+.++         +++|+++    |++++.                 .+..|.||||+|+..|  +.+++++
T Consensus        88 L~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~  158 (364)
T 3ljn_A           88 IHLAVMANKTDL---------VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI  158 (364)
T ss_dssp             HHHHHHTTCHHH---------HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred             HHHHHHcCCHHH---------HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            999999998888         8888888    777766                 7888999999999999  9999999


Q ss_pred             HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy9384         505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK-----VDHEDREGMTPLLVAAFEGHRDVCEILLEN  579 (978)
Q Consensus       505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~-----~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~  579 (978)
                      |+++|++++..+..|.|||++|+     ..++.+++++|++.|++     ++..+..|.||||+|+..|+.+++++|+++
T Consensus       159 Ll~~ga~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  233 (364)
T 3ljn_A          159 LVQLGASPTAKDKADETPLMRAM-----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM  233 (364)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT
T ss_pred             HHHcCCCCcccCCCCCCHHHHHH-----HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999999999     78999999999999998     999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc------------cCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384         580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT------------IDAEGRTVLSVAAAQGNIDVVNQLLDRG  646 (978)
Q Consensus       580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~~~~t~L~~A~~~~~~~iv~~Ll~~~  646 (978)
                      |++++..+..|.|||++|+..|+.+++++|+++|++++.            .+..++++++.|+..++.+.+..|+..+
T Consensus       234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999876432            3456789999999999888888888766

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.4e-34  Score=297.30  Aligned_cols=231  Identities=27%  Similarity=0.312  Sum_probs=186.5

Q ss_pred             ccccccCCCchHHHHHHHcC-------------CHHHHHHHHHhccCCCccc-cCCCCCcHHHHHHHhCCHHHHHHHHHC
Q psy9384         335 RITMFDSKNQSVLHKLCAEN-------------NINLLKTFLKSCEALDLEL-VDKHGQTALNVAAHQGFVDAVQILLEA  400 (978)
Q Consensus       335 ~~~~~~~~~~~~l~~a~~~~-------------~~~~v~~ll~~~~~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~  400 (978)
                      .++.+|..|.||||+|+..|             +.+++++|++  .+.+++. .+..|.||||+||..|+.++|++|++.
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA   79 (253)
T ss_dssp             ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH--ccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            35678899999999999977             8999999999  6777654 589999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCC
Q psy9384         401 GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV  479 (978)
Q Consensus       401 g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~  479 (978)
                      |++++..+..|.||||+|+..|+.+++++|+++|. +++..+..|.||||+|+..|+.++         +++|+++|+++
T Consensus        80 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~  150 (253)
T 1yyh_A           80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM---------LEDLINSHADV  150 (253)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH---------HHHHHHTTCCT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH---------HHHHHHcCCCC
Confidence            99999999999999999999999999999999997 899999999999999999999999         99999999999


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCC
Q psy9384         480 NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT  559 (978)
Q Consensus       480 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  559 (978)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+     ..++.+++++|++.|++++..+..|.|
T Consensus       151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~-----~~~~~~~v~~Ll~~ga~~~~~d~~g~t  225 (253)
T 1yyh_A          151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDITDHMDRL  225 (253)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-----HCCCHHHHHHHHHcCCCccccccCCCC
Confidence            999999999999999999999999999999999999999999999999     678999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCC
Q psy9384         560 PLLVAAFEGHRDVCEILLENEA  581 (978)
Q Consensus       560 ~L~~a~~~~~~~iv~~Ll~~g~  581 (978)
                      |+++|+..|+.+++++|.....
T Consensus       226 pl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          226 PRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHHHHHTTCHHHHHHHHC---
T ss_pred             HHHHHHHcCCHHHHHHHHHHhh
Confidence            9999999999999999997644

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.7e-35  Score=325.79  Aligned_cols=264  Identities=20%  Similarity=0.233  Sum_probs=240.5

Q ss_pred             ccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384         335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP  414 (978)
Q Consensus       335 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  414 (978)
                      .....|..|.|+||+|+..|+.++|++|++  .+.+++..|..|.||||+||..|+.++|++|++.|++++.  ..|.||
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~   87 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP   87 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH
Confidence            344567788999999999999999999999  7899999999999999999999999999999999997654  468999


Q ss_pred             HHHHHHcCCHHHHHHHHhC----CCCCCc-----------------CCCCCCcHHHHHHhcC--CceeeeeccchHHHHH
Q psy9384         415 LRSASWGGHSAVVKLLLQS----GADVNC-----------------SDMGGRTALRAAAWGG--HLEVTIVLGPLCVVKL  471 (978)
Q Consensus       415 L~~A~~~g~~~iv~~Ll~~----g~~~~~-----------------~~~~~~t~l~~A~~~~--~~~i~~~~~~~~vv~~  471 (978)
                      ||+|+..|+.+++++|+++    |++++.                 .+..|.||||+|+..|  +.++         +++
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~---------v~~  158 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEM---------IKI  158 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHH---------HHH
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHH---------HHH
Confidence            9999999999999999998    777766                 7788999999999999  8898         999


Q ss_pred             HHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384         472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD-----INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK  546 (978)
Q Consensus       472 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~  546 (978)
                      |+++|++++..+..|.|||++|+..|+.+++++|+++|++     ++..+..|.||||+|+     ..++.+++++|+++
T Consensus       159 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~  233 (364)
T 3ljn_A          159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI-----LINWEDVAMRFVEM  233 (364)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH-----TTTCHHHHHHHHTT
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHH-----HcCCHHHHHHHHHc
Confidence            9999999999999999999999999999999999999998     9999999999999999     78999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccC------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9384         547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH------------IDKSGRTPLWAAASMGHASCVALLLFWGA  614 (978)
Q Consensus       547 g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~------------~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~  614 (978)
                      |++++..+..|.|||++|+..|+.+++++|+++|++++.            .+..+++|++.|+..++.+.+..|+..+.
T Consensus       234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~  313 (364)
T 3ljn_A          234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL  313 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999866422            35567899999999998888888887765


Q ss_pred             CC
Q psy9384         615 YV  616 (978)
Q Consensus       615 ~~  616 (978)
                      +.
T Consensus       314 ~~  315 (364)
T 3ljn_A          314 DE  315 (364)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1e-33  Score=291.29  Aligned_cols=222  Identities=33%  Similarity=0.465  Sum_probs=161.1

Q ss_pred             CccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy9384         370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALR  449 (978)
Q Consensus       370 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~  449 (978)
                      +++..+..|.||||+||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            55677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCceeeeeccchHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhh
Q psy9384         450 AAAWGGHLEVTIVLGPLCVVKLLLAAG-AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSAL  528 (978)
Q Consensus       450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g-~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~  528 (978)
                      +|+..|+.++         +++|++.| .+++..+..|.|||++|+..++.+++++|+++|++++..+..|.|||++|+ 
T Consensus        83 ~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-  152 (237)
T 3b7b_A           83 LAAKKGHYEV---------VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA-  152 (237)
T ss_dssp             HHHHTTCHHH---------HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred             HHHHcCCHHH---------HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH-
Confidence            8888888887         88888887 777777778888888888888888888888877777666666666555555 


Q ss_pred             ccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHH
Q psy9384         529 CVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASC  605 (978)
Q Consensus       529 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~  605 (978)
                          ..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.+++.+.
T Consensus       153 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          153 ----FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             ----HHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             ----HCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence                3455555555555555555555555555555555555555555555555555555555555555555555433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.4e-34  Score=294.99  Aligned_cols=226  Identities=27%  Similarity=0.313  Sum_probs=142.4

Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384         372 ELVDKHGQTALNVAAHQGFVDAVQILLE----AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA  447 (978)
Q Consensus       372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~  447 (978)
                      +.+|..|.||||+||..|+.+++++|++    .|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            3467777788888888888887777776    677777777777888888888888888888888777777777777777


Q ss_pred             HHHHHhcCCceeeeeccchHHHHHHHHcCC----CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCC-CCCCCh
Q psy9384         448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGA----HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-NDGRTA  522 (978)
Q Consensus       448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~----~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~  522 (978)
                      ||+|+..|+.++         +++|++.++    +++..+..|.|||++|+..|+.+++++|+++|++++..+ ..|.||
T Consensus        83 l~~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~  153 (241)
T 1k1a_A           83 AHLACEHRSPTC---------LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP  153 (241)
T ss_dssp             HHHHHHTTCHHH---------HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCH
T ss_pred             HHHHHHcCCHHH---------HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcH
Confidence            777777777777         777777776    666667777777777777777777777777776666554 344444


Q ss_pred             hhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC
Q psy9384         523 LSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH  602 (978)
Q Consensus       523 l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~  602 (978)
                      ||+|+     ..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++
T Consensus       154 L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          154 LIHAV-----ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             HHHHH-----HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             HHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCc
Confidence            44444     3344444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHH
Q psy9384         603 ASCVALLLF  611 (978)
Q Consensus       603 ~~~v~~Ll~  611 (978)
                      .++++.|.+
T Consensus       229 ~~i~~~l~~  237 (241)
T 1k1a_A          229 IDILRGKAT  237 (241)
T ss_dssp             HHHHTC---
T ss_pred             HHHHhhhcc
Confidence            444444443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7e-33  Score=284.95  Aligned_cols=215  Identities=33%  Similarity=0.458  Sum_probs=119.7

Q ss_pred             CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCC
Q psy9384         478 HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREG  557 (978)
Q Consensus       478 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~  557 (978)
                      +++..+..|.|||++|+..|+.+++++|+++|++++..+..|.|||++|+     ..++.+++++|++.|++++..+..|
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g   77 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA-----ENNHLEAVKYLIKAGALVDPKDAEG   77 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH-----HTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHH-----HhCCHHHHHHHHhCCCCCCCCCCCC
Confidence            45556667777777777777777777777777666655555555555555     3444555555555555444444444


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCcccCCCCCcHHHHHHHcCCH
Q psy9384         558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG-AYVDTIDAEGRTVLSVAAAQGNI  636 (978)
Q Consensus       558 ~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~A~~~~~~  636 (978)
                      .                                 ||||.|+..|+.+++++|++.| .+++..+..|.||||+|+..++.
T Consensus        78 ~---------------------------------t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  124 (237)
T 3b7b_A           78 S---------------------------------TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV  124 (237)
T ss_dssp             C---------------------------------CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             C---------------------------------cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Confidence            4                                 4455554445555555555444 44444445555555555555555


Q ss_pred             HHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH
Q psy9384         637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY  716 (978)
Q Consensus       637 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  716 (978)
                      +++++|+++|              .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus       125 ~~~~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  190 (237)
T 3b7b_A          125 DLVKLLLSKG--------------SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY  190 (237)
T ss_dssp             HHHHHHHHTT--------------CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHCC--------------CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            5555555555              44444555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384         717 HLVEMFLEQYEANVNQKSHDGRTALRVNM  745 (978)
Q Consensus       717 ~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~  745 (978)
                      +++++|+++ |++++.+|..|.|||++|+
T Consensus       191 ~~v~~Ll~~-gad~~~~d~~g~t~l~~A~  218 (237)
T 3b7b_A          191 DCVVLFLSR-DSDVTLKNKEGETPLQCAS  218 (237)
T ss_dssp             HHHHHHHTT-TCCTTCCCTTSCCHHHHSC
T ss_pred             hHHHHHHHc-CCCCCccCCCCCCHHHHHH
Confidence            555555554 5555555555555555555

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.8e-33  Score=286.73  Aligned_cols=226  Identities=30%  Similarity=0.390  Sum_probs=173.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      .+.++|+.|+..|+++.++++++. .+...+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence            356778888888888888888874 2334566777888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI  501 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~  501 (978)
                      |+.+++++|+++|++++..+..|.||||+|+..++.++         +++|+++|++++..+..|.||||+|+..|+.++
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  154 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI---------AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM  154 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            88888888888888888888888888888888888877         888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy9384         502 VSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEA  581 (978)
Q Consensus       502 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~  581 (978)
                      +++|+++|++++.++..|.|||++|+     ..++.+++++|++.|++++.++..|.||+++|+..++.+++++|.++|+
T Consensus       155 v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          155 VHILLFYKASTNIQDTEGNTPLHLAC-----DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCccccCCCCCCHHHHHH-----HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            88888887777777777777777766     5566677777777777666666666677777666666666666666554


Q ss_pred             C
Q psy9384         582 D  582 (978)
Q Consensus       582 ~  582 (978)
                      +
T Consensus       230 ~  230 (231)
T 3aji_A          230 S  230 (231)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-33  Score=297.96  Aligned_cols=264  Identities=24%  Similarity=0.248  Sum_probs=197.9

Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384         371 LELVDKHGQTALNVAAHQGFVDAVQILLEAGAN---INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTA  447 (978)
Q Consensus       371 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~  447 (978)
                      ++..|..|.||||+||..|+.++|++|++.|++   ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            456789999999999999999999999999888   78889999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384         448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA  527 (978)
Q Consensus       448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  527 (978)
                      ||+|+..|+.++         +++|+++|++.........                  +..+.  ......+.++++.+.
T Consensus        82 L~~A~~~~~~~~---------v~~Ll~~~~~~~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~~  132 (282)
T 1oy3_D           82 LHLACRVRAHTC---------ACVLLQPRPSHPRDASDTY------------------LTQSQ--DCTPDTSHAPAAVDS  132 (282)
T ss_dssp             HHHHTTTTCHHH---------HHHHSSSCCSSCCCC--------------------------------------------
T ss_pred             HHHHHHcCCcch---------hHhhhccCCCCchhhHHHH------------------hhccc--ccCcchhcchhhhcc
Confidence            999999999998         9999999877543221110                  00000  011122334444443


Q ss_pred             hccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCC-CCcHHHHHHHcCCHHHH
Q psy9384         528 LCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS-GRTPLWAAASMGHASCV  606 (978)
Q Consensus       528 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~-~~t~L~~A~~~~~~~~v  606 (978)
                      .    ..........+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++
T Consensus       133 ~----~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v  208 (282)
T 1oy3_D          133 Q----PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL  208 (282)
T ss_dssp             ---------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             c----cccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHH
Confidence            2    223334455556667788889999999999999999999999999999999988854 99999999999999999


Q ss_pred             HHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcC
Q psy9384         607 ALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG  681 (978)
Q Consensus       607 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  681 (978)
                      ++|+++|++++.++..|.||||+|+..++.+++++|+++|              .+++.++..|.|||++|....
T Consensus       209 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g--------------a~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG--------------APEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT--------------CCCCCCC--------------
T ss_pred             HHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC--------------CCcCcCCCcccccccccCCcc
Confidence            9999999999999999999999999999999999999999              788899999999999987654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.5e-33  Score=297.05  Aligned_cols=251  Identities=23%  Similarity=0.194  Sum_probs=153.9

Q ss_pred             cccccCCCchHHHHHHHcCCHHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCC
Q psy9384         336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALD---LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGW  412 (978)
Q Consensus       336 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  412 (978)
                      ++..|..|.||||+|+..|+.+++++|++  .+.+   ++..+..|.||||+||..|+.++|++|+++|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~   79 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH   79 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            45678899999999999999999999999  5555   788899999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcCCC-------------CCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCC
Q psy9384         413 TPLRSASWGGHSAVVKLLLQSGADVNCSDM-------------GGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV  479 (978)
Q Consensus       413 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~-------------~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~  479 (978)
                      ||||+|+..|+.+++++|+++|++......             .+.++++.++..+....        +...+...+.++
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  151 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE--------EEPRDEDWRLQL  151 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------CCCGGGGT
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh--------hhhhhhhhhhcC
Confidence            999999999999999999999876543211             12233333332222211        023333344445


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCC
Q psy9384         480 NAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMT  559 (978)
Q Consensus       480 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  559 (978)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..                                     .|.|
T Consensus       152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------------------------------~g~t  194 (282)
T 1oy3_D          152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-------------------------------------CGRT  194 (282)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-------------------------------------TCCC
T ss_pred             CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------------------------------------CCcC
Confidence            555555555555555555555555555555555444422                                     2455


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHc
Q psy9384         560 PLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ  633 (978)
Q Consensus       560 ~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  633 (978)
                      |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|...
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-32  Score=284.10  Aligned_cols=231  Identities=29%  Similarity=0.360  Sum_probs=181.7

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcH
Q psy9384         551 DHEDREGMTPLLVAAFEGHRDVCEILLE----NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTV  626 (978)
Q Consensus       551 ~~~~~~~~t~L~~a~~~~~~~iv~~Ll~----~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  626 (978)
                      +.+|..|.||||+|+..|+.+++++|++    .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            3456778888888888888888888876    678888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCc
Q psy9384         627 LSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-NDGRA  705 (978)
Q Consensus       627 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t  705 (978)
                      ||+|+..++.+++++|++.+...          ..+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.|
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~----------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t  152 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPG----------TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS  152 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTT----------SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCc----------cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCc
Confidence            88888888888888888877311          13666677788888888888888888888888888888877 67888


Q ss_pred             HHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCC
Q psy9384         706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN  785 (978)
Q Consensus       706 ~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~  785 (978)
                      |||+|+..|+.+++++|+++ |++++.++..|.||||+|+     ..++.+++++|+    ++|     ++++..+..|.
T Consensus       153 ~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll----~~g-----a~~~~~~~~g~  217 (241)
T 1k1a_A          153 PLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSAS-----GRGLLPLVRTLV----RSG-----ADSSLKNCHND  217 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHH-----HHTCHHHHHHHH----HTT-----CCTTCCCTTSC
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHH----hcC-----CCCCCcCCCCC
Confidence            88888888888888888886 8888888888888888888     778888888888    888     88888888888


Q ss_pred             ccchHHHhhchHHHHHHHHHh
Q psy9384         786 PHISRQEYKKRLHILRKIISI  806 (978)
Q Consensus       786 t~l~~a~~~g~~~i~~~l~~~  806 (978)
                      ||++.|+..|+.++++.|.+.
T Consensus       218 tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          218 TPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             CTTTTCSSHHHHHHHTC----
T ss_pred             CHHHHHHhcCcHHHHhhhccC
Confidence            888877777777777777654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.4e-33  Score=285.21  Aligned_cols=226  Identities=31%  Similarity=0.305  Sum_probs=173.1

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHh
Q psy9384         375 DKHGQTALNVAAHQGFVDAVQILLEAGAN-INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW  453 (978)
Q Consensus       375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~  453 (978)
                      +..+.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            34578899999999999999999887643 66778889999999999999999999999999999888889999999999


Q ss_pred             cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCC
Q psy9384         454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS  533 (978)
Q Consensus       454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  533 (978)
                      .|+.++         +++|+++|++++..+..|.|||++|+..++.+++++|+++|++++..+..+.|||++|+     .
T Consensus        83 ~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-----~  148 (231)
T 3aji_A           83 AGXDEI---------VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA-----A  148 (231)
T ss_dssp             HTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----H
T ss_pred             cCHHHH---------HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH-----H
Confidence            999888         99999999999888888899999999999888888888888877776666666666666     4


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384         534 DGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG  613 (978)
Q Consensus       534 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  613 (978)
                      .++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|.+.|
T Consensus       149 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            45566666666666666666666666666666666666666666666666655666666666666555666666655554


Q ss_pred             C
Q psy9384         614 A  614 (978)
Q Consensus       614 ~  614 (978)
                      +
T Consensus       229 a  229 (231)
T 3aji_A          229 A  229 (231)
T ss_dssp             H
T ss_pred             c
Confidence            3

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=294.30  Aligned_cols=226  Identities=27%  Similarity=0.337  Sum_probs=131.1

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHhCCCCCCcCCCCCC
Q psy9384         375 DKHGQTALNVAAHQGFVDAVQILLEAGAN--------INHTDCEGWTPLRSASWGGHS-AVVKLLLQSGADVNCSDMGGR  445 (978)
Q Consensus       375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~~~t~L~~A~~~g~~-~iv~~Ll~~g~~~~~~~~~~~  445 (978)
                      |..+.++|+.||..|+.++|++|++.|.+        ++..+..+.|||++|+..++. .++++|++.|++++..+..|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~   87 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGS   87 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSC
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCC
Confidence            44455666666666666666666666543        334455666777777666554 366667777777777777777


Q ss_pred             cHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhh
Q psy9384         446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV  525 (978)
Q Consensus       446 t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  525 (978)
                      ||||+|+..|+.++         +++|++.|++++..+..|.||++.|+..++.+++++|+++|++++.++..|.||||+
T Consensus        88 TpLh~A~~~g~~~~---------v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~  158 (269)
T 4b93_B           88 SPLHVAALHGRADL---------IPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIY  158 (269)
T ss_dssp             CHHHHHHHTTCTTH---------HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred             CHHHHHHHcCcHHH---------HHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            77777777777766         777777777777666677777777777777777777777777777666666777766


Q ss_pred             hhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC-HH
Q psy9384         526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH-AS  604 (978)
Q Consensus       526 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~-~~  604 (978)
                      |+     ..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|+|||++|+++++ .+
T Consensus       159 A~-----~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~  233 (269)
T 4b93_B          159 AC-----SGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIME  233 (269)
T ss_dssp             HH-----HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHH
T ss_pred             HH-----HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHH
Confidence            66     5566666777777777777677777777777777777777777777777777777777777777766554 24


Q ss_pred             HHHHHHHCCC
Q psy9384         605 CVALLLFWGA  614 (978)
Q Consensus       605 ~v~~Ll~~g~  614 (978)
                      +++.+...+.
T Consensus       234 lL~~l~~~~~  243 (269)
T 4b93_B          234 LLQVVPSCVA  243 (269)
T ss_dssp             HTTC------
T ss_pred             HHHHHHHhch
Confidence            4444444433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.8e-33  Score=296.50  Aligned_cols=242  Identities=21%  Similarity=0.203  Sum_probs=202.2

Q ss_pred             cCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384         353 ENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ  432 (978)
Q Consensus       353 ~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  432 (978)
                      ..+...+..++.  .+ +++..|..|.||||+|+..|+.++|++|++.|++++..+  |.||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~v~~lL~--~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~   83 (285)
T 3kea_A            9 TWKSKQLKSFLS--SK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF   83 (285)
T ss_dssp             GCCHHHHHHHHH--ST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHH
T ss_pred             hcCHHHHHHHHH--hC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHH
Confidence            345555555555  22 578889999999999999999999999999999988874  8899999999999999999999


Q ss_pred             CCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         433 SGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEG-RTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       433 ~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      +|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..| .|||++|+..|+.+++++|+++|++
T Consensus        84 ~ga~~~~~d~~g~t~L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~  154 (285)
T 3kea_A           84 SGLDDSQFDDKGNTALYYAVDSGNMQT---------VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  154 (285)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred             CCCCCCCcCCCCCcHHHHHHHcCCHHH---------HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Confidence            999999999999999999999999998         999999999999988888 7999999999999999999999887


Q ss_pred             CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCccCCCCCC
Q psy9384         512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTP-LLVAAFEGHRDVCEILLENEADQDHIDKSG  590 (978)
Q Consensus       512 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~  590 (978)
                      .... ..|.||||+|+     ..++.+++++|++.|++++..+..|.|| ||+|+..++.+++++|+++|++++..+   
T Consensus       155 ~~~~-~~g~t~L~~A~-----~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~---  225 (285)
T 3kea_A          155 TFDL-AILLSCIHITI-----KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN---  225 (285)
T ss_dssp             TCCC-STHHHHHHHHH-----HTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT---
T ss_pred             cccc-cCCccHHHHHH-----HcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC---
Confidence            6332 26788888888     6788888888888888888888888886 888888888888888888888887765   


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCC
Q psy9384         591 RTPLWAAASMGHASCVALLLFWGAYVDTIDA  621 (978)
Q Consensus       591 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  621 (978)
                          +.|+..++.+++++|+++|+++.....
T Consensus       226 ----~~a~~~~~~~iv~~Ll~~g~~~~~~~~  252 (285)
T 3kea_A          226 ----LENVLLDDAEIAKMIIEKHVEYKSDSY  252 (285)
T ss_dssp             ----GGGGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred             ----hhhhhcCCHHHHHHHHHcCCCCCCccc
Confidence                245667888888888888877654433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=292.55  Aligned_cols=229  Identities=25%  Similarity=0.333  Sum_probs=179.9

Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHHhccCCC--------ccccCCCCCcHHHHHHHhCCH-HHHHHHHHCCCCCCCCCC
Q psy9384         339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALD--------LELVDKHGQTALNVAAHQGFV-DAVQILLEAGANINHTDC  409 (978)
Q Consensus       339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~--------~~~~~~~~~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~  409 (978)
                      .|..+.++|+.|+..|++++|++|++  .+.+        ++..+..+.|||++|+..+.. .++++|++.|+++|..|.
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCTTCCCT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            46667799999999999999999998  4432        456677899999999998776 488999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcH
Q psy9384         410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA  489 (978)
Q Consensus       410 ~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~  489 (978)
                      .|+||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.++         +++|++.|++++.++..|.||
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~---------~~~Ll~~g~~~n~~d~~g~Tp  155 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV---------VKCLLDSNAKPNKKDLSGNTP  155 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHH---------HHHHHHCCCCCCCCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999         999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy9384         490 LIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGH  569 (978)
Q Consensus       490 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~  569 (978)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+     ..++.+++++|++.|++++.++..|.|||++|+++++
T Consensus       156 L~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          156 LIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV-----IEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH-----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999999999999999999999     7899999999999999999999999999999988775


Q ss_pred             -HHHHHHHHhCCCCc
Q psy9384         570 -RDVCEILLENEADQ  583 (978)
Q Consensus       570 -~~iv~~Ll~~g~~~  583 (978)
                       .++++.|...+...
T Consensus       231 i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          231 IMELLQVVPSCVASL  245 (269)
T ss_dssp             HHHHTTC--------
T ss_pred             HHHHHHHHHHhchhh
Confidence             34455555554443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=278.89  Aligned_cols=232  Identities=25%  Similarity=0.275  Sum_probs=176.7

Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCC-CCCcHHHH
Q psy9384         372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDM-GGRTALRA  450 (978)
Q Consensus       372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~-~~~t~l~~  450 (978)
                      +..|..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.... .+.|||++
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            44566777888888888888888888888888888888888888888888888888888888877664443 37788888


Q ss_pred             HHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhcc
Q psy9384         451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCV  530 (978)
Q Consensus       451 A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  530 (978)
                      |+..|+.++         +++|++.|++++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.||++.|+.  
T Consensus        83 A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~--  151 (240)
T 3eu9_A           83 ATRQGHLSM---------VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY--  151 (240)
T ss_dssp             HHHHTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH--
T ss_pred             HHHcCCHHH---------HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH--
Confidence            888888777         888888888888777788888888888888888888888888777777777777777763  


Q ss_pred             CCCCChHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9384         531 PSSDGYAKVVSILLEKGAKVDHEDR-EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL  609 (978)
Q Consensus       531 ~~~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~L  609 (978)
                        .....+++++|++.|++++..+. .|.||||.|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|
T Consensus       152 --~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  229 (240)
T 3eu9_A          152 --RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL  229 (240)
T ss_dssp             --HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             --hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence              22335677777777777777665 677777777777777777777777777777777777777777777777777777


Q ss_pred             HHCCCCC
Q psy9384         610 LFWGAYV  616 (978)
Q Consensus       610 l~~g~~~  616 (978)
                      ++.+...
T Consensus       230 ~~~~~~~  236 (240)
T 3eu9_A          230 QEARQAK  236 (240)
T ss_dssp             HHHC---
T ss_pred             HHhhhcc
Confidence            7776543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4e-32  Score=290.31  Aligned_cols=279  Identities=20%  Similarity=0.161  Sum_probs=215.5

Q ss_pred             HHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy9384         629 VAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLI  708 (978)
Q Consensus       629 ~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  708 (978)
                      .++..+..+.++.++.....+......     ......+..+.|||+.|+..|+.+++++|+++|++++..|..|.||||
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   78 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVK-----RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALH   78 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCC-----CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHH
T ss_pred             hHHHHHHHHHHHHHHcccccccccccc-----CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            355666677777777665432221111     111123446789999999999999999999999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccc
Q psy9384         709 LAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHI  788 (978)
Q Consensus       709 ~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l  788 (978)
                      +|+..|+.+++++|+++ |++++..+..|.||||+|+     ..++.+++++|+    ++|     ++++..+..|.|||
T Consensus        79 ~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~-----~~g~~~~v~~Ll----~~g-----~~~~~~~~~g~t~l  143 (299)
T 1s70_B           79 QACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA-----SCGYLDIAEYLI----SQG-----AHVGAVNSEGDTPL  143 (299)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHH----HTT-----CCTTCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH-----HcCCHHHHHHHH----hCC-----CCCCCcCCCCCCHH
Confidence            99999999999999997 9999999999999999999     999999999999    999     99999888888888


Q ss_pred             hHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhcc
Q psy9384         789 SRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHF  868 (978)
Q Consensus       789 ~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g  868 (978)
                      +.|+..+..+++++++...                                |++++..+..+.++++.   .+..++..|
T Consensus       144 ~~A~~~~~~~~~~~ll~~~--------------------------------~~~~~~~~~~~~~~~~~---~~~~~l~~~  188 (299)
T 1s70_B          144 DIAEEEAMEELLQNEVNRQ--------------------------------GVDIEAARKEEERIMLR---DARQWLNSG  188 (299)
T ss_dssp             HHCCSHHHHHHHHHHHHHH--------------------------------TCCHHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred             HHHHhcchHHHHHHHHhhc--------------------------------CCCchhhhhhhhhHHHH---HHHHHHhcc
Confidence            8777777777777766543                                22222222222222111   112222222


Q ss_pred             C-CchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHHcCCCCccc--
Q psy9384         869 S-RDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYF--  945 (978)
Q Consensus       869 ~-~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~~--  945 (978)
                      . .....+ ..|    .||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+.+|+.+++++|+++|++++..  
T Consensus       189 ~~~~~~~~-~~g----~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  263 (299)
T 1s70_B          189 HINDVRHA-KSG----GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (299)
T ss_dssp             CCCCCCCT-TTC----CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             Ccchhhhc-CCC----CCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence            2 222233 667    99999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             ccchhhhhhhhcChhHHHHHHH
Q psy9384         946 VHYYYYYNSAKSGHETVLRLLK  967 (978)
Q Consensus       946 ~~~~~l~~A~~~~~~~~~~~L~  967 (978)
                      .|.|||++|++....-+.+++.
T Consensus       264 ~g~t~l~~A~~~~~~~l~~l~~  285 (299)
T 1s70_B          264 VGQTAFDVADEDILGYLEELQK  285 (299)
T ss_dssp             TSCCTTTSCCSGGGHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            4899999998754444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=1.6e-32  Score=289.23  Aligned_cols=233  Identities=16%  Similarity=0.141  Sum_probs=213.7

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHH
Q psy9384         390 FVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV  469 (978)
Q Consensus       390 ~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv  469 (978)
                      ..++.++|.+.  +++.+|..|.||||+|+..|+.+++++|+++|++++..  +|.||||+|+..|+.++         +
T Consensus        12 ~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~---------v   78 (285)
T 3kea_A           12 SKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKI---------V   78 (285)
T ss_dssp             HHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHH---------H
T ss_pred             HHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHH---------H
Confidence            34455555554  57889999999999999999999999999999999887  48999999999999999         9


Q ss_pred             HHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCC-CChhhhhhhccCCCCChHHHHHHHHhCCC
Q psy9384         470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG-RTALSVSALCVPSSDGYAKVVSILLEKGA  548 (978)
Q Consensus       470 ~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~  548 (978)
                      ++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..| .|||++|+     ..++.+++++|++.|.
T Consensus        79 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~-----~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           79 KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH-----HTTCHHHHHHHHTTSC
T ss_pred             HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999 79999999     7899999999999998


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q psy9384         549 KVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTP-LWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL  627 (978)
Q Consensus       549 ~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L  627 (978)
                      +.... ..|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..++.+++++|+++|++++..+.      
T Consensus       154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~------  226 (285)
T 3kea_A          154 STFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL------  226 (285)
T ss_dssp             TTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG------
T ss_pred             ccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh------
Confidence            77332 278999999999999999999999999999999999998 9999999999999999999999998773      


Q ss_pred             HHHHHcCCHHHHHHHHHCCCc
Q psy9384         628 SVAAAQGNIDVVNQLLDRGMI  648 (978)
Q Consensus       628 ~~A~~~~~~~iv~~Ll~~~~~  648 (978)
                       .|+..|+.+++++|+++|.+
T Consensus       227 -~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          227 -ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             -GGGTTTCHHHHHHHHHHHHH
T ss_pred             -hhhhcCCHHHHHHHHHcCCC
Confidence             56789999999999999943

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=2.2e-32  Score=292.30  Aligned_cols=275  Identities=26%  Similarity=0.347  Sum_probs=230.6

Q ss_pred             HHHHcCCHHHHHHHHHhccCCCc-------cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         349 KLCAENNINLLKTFLKSCEALDL-------ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       349 ~a~~~~~~~~v~~ll~~~~~~~~-------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      .++..++.+.++.++.+......       ...+..+.||||.||..|+.++|++|++.|++++..+..|.||||+|+..
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID   83 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            46677788888888874222211       11233567999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI  501 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~  501 (978)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..|.|||++|+..++.++
T Consensus        84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  154 (299)
T 1s70_B           84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI---------AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL  154 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH---------HHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHH
Confidence            99999999999999999999999999999999999999         999999999999999999999999999999999


Q ss_pred             HHHHHHc-CCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy9384         502 VSSILEY-DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN  579 (978)
Q Consensus       502 v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~  579 (978)
                      +++++.. +.+++.....+.+++             ...+..++.. .......+..|.||||+|+..|+.+++++|+++
T Consensus       155 ~~~ll~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (299)
T 1s70_B          155 LQNEVNRQGVDIEAARKEEERIM-------------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (299)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHH-------------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHhhcCCCchhhhhhhhhHH-------------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence            9998864 555543322221111             2223334444 444555667899999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9384         580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG  646 (978)
Q Consensus       580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~  646 (978)
                      |++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|++. ..+.++.+++..
T Consensus       222 g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~  287 (299)
T 1s70_B          222 RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQ  287 (299)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHHT
T ss_pred             CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999764 456666666543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=1.9e-31  Score=275.07  Aligned_cols=232  Identities=28%  Similarity=0.337  Sum_probs=215.7

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHH
Q psy9384         337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPL  415 (978)
Q Consensus       337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L  415 (978)
                      +..|..+.++|+.|+..|+.+++++|++  .+.+++..+..|.||||+|+..|+.+++++|++.|.+++..+ ..|.|||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            3457778899999999999999999999  889999999999999999999999999999999999887555 4499999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy9384         416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY  495 (978)
Q Consensus       416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~  495 (978)
                      |+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.++         +++|+++|++++..+..|.|||+.|+.
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~g~t~l~~a~~  151 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI---------VAYLIAKGQDVDMMDQNGMTPLMWAAY  151 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHH---------HHHHHhcCCCccccCCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999         999999999999999999999999997


Q ss_pred             cCC-HHHHHHHHHcCCCCccCCC-CCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy9384         496 MGH-ADIVSSILEYDADINQQDN-DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVC  573 (978)
Q Consensus       496 ~~~-~~~v~~Ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv  573 (978)
                      .++ .+++++|++.|++++..+. .|.|||++|+     ..++.+++++|++.|++++..+..|.||+++|+..|+.+++
T Consensus       152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  226 (240)
T 3eu9_A          152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV-----LAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI  226 (240)
T ss_dssp             HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHH-----HHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            666 8999999999999999987 8999999999     67899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCcc
Q psy9384         574 EILLENEADQD  584 (978)
Q Consensus       574 ~~Ll~~g~~~~  584 (978)
                      ++|++++....
T Consensus       227 ~~L~~~~~~~~  237 (240)
T 3eu9_A          227 NHLQEARQAKG  237 (240)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHhhhccC
Confidence            99999987653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=9.2e-34  Score=305.17  Aligned_cols=291  Identities=15%  Similarity=0.062  Sum_probs=159.0

Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCc
Q psy9384         538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD  617 (978)
Q Consensus       538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  617 (978)
                      +++++|+++|++++..+..|.++++     |+.+++++|+++|++++.      ++++.|+.....          ..-.
T Consensus        33 dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~----------~~~~   91 (327)
T 1sw6_A           33 DLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSS----------NRNS   91 (327)
T ss_dssp             TCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------------
T ss_pred             chHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhcccc----------cccc
Confidence            4567777777777777666766655     667777777777666432      344444322100          0000


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccc-cCCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q psy9384         618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQH-RDNCGWTPLHYAAIEGHEEVCRALLEAGAKV  696 (978)
Q Consensus       618 ~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  696 (978)
                      .......+.+|.|+..+..+++++|++.|              .++|. ++..|+||||+|+..|+.+++++|+++|+++
T Consensus        92 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~g--------------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~  157 (327)
T 1sw6_A           92 EGGSSNQQQQHVSFDSLLQEVNDAFPNTQ--------------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR  157 (327)
T ss_dssp             ------------CHHHHHHHHHHHCTTSC--------------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccCCccchhHHHHHhhHHHHHHHHHhcC--------------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            01111123345666666666777777666              56666 6667777777777777777777777777777


Q ss_pred             CCCCCCCCcHHHHHHHCCC---HHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCc
Q psy9384         697 DQVDNDGRAPLILAAQDGH---YHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLT  773 (978)
Q Consensus       697 ~~~d~~g~t~L~~A~~~~~---~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~  773 (978)
                      +..|..|.||||+|+..|+   .++++.|++....+++.++..|.||||+|+.... ..++.+++++|+    +.+    
T Consensus       158 n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~-~~g~~~~v~~Ll----~~~----  228 (327)
T 1sw6_A          158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG-MTGCSAAAKYYL----DIL----  228 (327)
T ss_dssp             TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHT-STTCHHHHHHHH----HHH----
T ss_pred             CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcc-ccccHHHHHHHH----HHH----
Confidence            7777777777777777666   4566666665335666667777777777761100 055666666666    433    


Q ss_pred             ccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccc
Q psy9384         774 VEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQ  853 (978)
Q Consensus       774 ~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tp  853 (978)
                       ..                                          +....+...   +...+... |++++..+..|.||
T Consensus       229 -~~------------------------------------------~~~~~~~~~---i~~~~~~~-g~~~~~~~~~g~t~  261 (327)
T 1sw6_A          229 -MG------------------------------------------WIVKKQNRP---IQSGTNEK-ESKPNDKNGERKDS  261 (327)
T ss_dssp             -HH------------------------------------------HHHHGGGCC---EEEC-----------------CH
T ss_pred             -HH------------------------------------------HHhcccchH---HHhhhhcc-cCCcccccccCCCh
Confidence             11                                          011112222   44445555 88888888888888


Q ss_pred             cccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcC
Q psy9384         854 TSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSG  927 (978)
Q Consensus       854 l~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~  927 (978)
                      ||.|+. +++|+++  +++..+ ..|    .||||+|+..|+.++|++|+++|++++.+|..|+||||+|+++|
T Consensus       262 L~~a~~-~~~Ll~~--~~n~~d-~~G----~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          262 ILENLD-LKWIIAN--MLNAQD-SNG----DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHCS-HHHHHHH--TTTCCC-TTS----CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             hHHHHH-HHHHHHh--CCCCCC-CCC----CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            887765 6677766  466666 667    77777777777777777777777777777777777777777654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=1.6e-31  Score=271.88  Aligned_cols=213  Identities=29%  Similarity=0.340  Sum_probs=131.1

Q ss_pred             CCHHHHHHHHHhccCCCcccc-CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9384         354 NNINLLKTFLKSCEALDLELV-DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ  432 (978)
Q Consensus       354 ~~~~~v~~ll~~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  432 (978)
                      |+.+++++|++  .+.+++.. |..|.||||+||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEE--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHH--cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            44555566665  45555443 5666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCC-CCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         433 SGA-DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       433 ~g~-~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      ++. +++..+..+.||||+|+..++.++         +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  150 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGM---------LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN  150 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHH---------HHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            664 566666666666666666666666         6666666666666666666666666666666666666666666


Q ss_pred             CccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy9384         512 INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD  582 (978)
Q Consensus       512 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~  582 (978)
                      ++..+..|.|||++|+     ..++.+++++|++.|++++..+..|.||+++|+..++.+++++|+++|+.
T Consensus       151 ~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          151 KDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             TTCCCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CCCcCCCCcCHHHHHH-----HcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            6555555555555555     34555555555555555555555555555555555555555555555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1.7e-31  Score=272.81  Aligned_cols=207  Identities=26%  Similarity=0.313  Sum_probs=106.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCC--CCCCc-CCCCCCcHHHHHHh
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEAGANIN-HTDCEGWTPLRSASWGGHSAVVKLLLQSG--ADVNC-SDMGGRTALRAAAW  453 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~-~~~~~~t~l~~A~~  453 (978)
                      |.||||+||..|+.+++++|++.|.++. ..+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            3555566665566565555555554433 24555555666666555566666665555  33333 44455555555555


Q ss_pred             cCCceeeeeccchHHHHHHHHcC--CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccC
Q psy9384         454 GGHLEVTIVLGPLCVVKLLLAAG--AHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP  531 (978)
Q Consensus       454 ~~~~~i~~~~~~~~vv~~Ll~~g--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  531 (978)
                      .|+.++         +++|+++|  ++++..+..|.|||+.|+..|+.+++++|+++|++++.++..|.||||+|+    
T Consensus        82 ~~~~~~---------~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----  148 (228)
T 2dzn_A           82 VGNLEV---------VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA----  148 (228)
T ss_dssp             HCCHHH---------HHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----
T ss_pred             cCCHHH---------HHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH----
Confidence            555555         55555555  455555555555555555555555555555555555444444444444444    


Q ss_pred             CCCChHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccCCCCCCCcHHHHHH
Q psy9384         532 SSDGYAKVVSILLEKG-AKVDHEDREGMTPLLVAAFEGHRDVCEILL-ENEADQDHIDKSGRTPLWAAA  598 (978)
Q Consensus       532 ~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll-~~g~~~~~~~~~~~t~L~~A~  598 (978)
                       ..++.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+ +.|++++..+..|.||+++|+
T Consensus       149 -~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          149 -SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             -HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             -HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence             333444444444444 444444444445555555555555555555 445555544555555555443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.4e-31  Score=270.57  Aligned_cols=214  Identities=29%  Similarity=0.362  Sum_probs=184.8

Q ss_pred             CCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchH
Q psy9384         389 GFVDAVQILLEAGANINHT-DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLC  467 (978)
Q Consensus       389 g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~  467 (978)
                      |+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++        
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~--------   73 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV--------   73 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH--------
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH--------
Confidence            6788899999999998765 7889999999999999999999999999999999999999999999999998        


Q ss_pred             HHHHHHHcCC-CCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384         468 VVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK  546 (978)
Q Consensus       468 vv~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~  546 (978)
                       +++|++.+. +++..+..+.|||++|+..++.+++++|+++|++++..+..|.||||+|+     ..++.+++++|++.
T Consensus        74 -v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~  147 (223)
T 2f8y_A           74 -FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA-----AVNNVDAAVVLLKN  147 (223)
T ss_dssp             -HHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHT
T ss_pred             -HHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH-----HcCCHHHHHHHHHc
Confidence             999999887 88888899999999999999999999999999998888888888888888     56778888888888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9384         547 GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV  616 (978)
Q Consensus       547 g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~  616 (978)
                      |++++..+..|.|||++|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|+++|+..
T Consensus       148 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            8888888888888888888888888888888888888888888888888888888888888888877754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1.3e-30  Score=266.32  Aligned_cols=209  Identities=24%  Similarity=0.324  Sum_probs=168.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy9384         486 GRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA  565 (978)
Q Consensus       486 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~  565 (978)
                      |.|||+.|+..|+.+++++|++.+.++.                                     +..+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-------------------------------------~~~~~~g~t~L~~A~   44 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLL-------------------------------------LQKDQDGRIPLHWSV   44 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGT-------------------------------------TCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccc-------------------------------------ccCCCCCCCHHHHHH
Confidence            4566777777777776666666654332                                     124566777888888


Q ss_pred             HcCCHHHHHHHHhCC--CCccC-CCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384         566 FEGHRDVCEILLENE--ADQDH-IDKSGRTPLWAAASMGHASCVALLLFWG--AYVDTIDAEGRTVLSVAAAQGNIDVVN  640 (978)
Q Consensus       566 ~~~~~~iv~~Ll~~g--~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~~~~~iv~  640 (978)
                      ..|+.+++++|+++|  .+++. .+..|.||||.|+..|+.+++++|++.|  ++++..+..|.||||+|+..++.++++
T Consensus        45 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  124 (228)
T 2dzn_A           45 SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ  124 (228)
T ss_dssp             HTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHH
Confidence            888888888888887  45544 6677888888888888888888888887  777888888888888888888888888


Q ss_pred             HHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHCCCHHHH
Q psy9384         641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG-AKVDQVDNDGRAPLILAAQDGHYHLV  719 (978)
Q Consensus       641 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~iv  719 (978)
                      +|+++|              .+++.++..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++
T Consensus       125 ~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v  190 (228)
T 2dzn_A          125 FLIENG--------------ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA  190 (228)
T ss_dssp             HHHHTT--------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHcC--------------CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHH
Confidence            888888              677788888889999999889999999999888 88888888899999999999999999


Q ss_pred             HHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384         720 EMFLEQYEANVNQKSHDGRTALRVNM  745 (978)
Q Consensus       720 ~~Ll~~~~~~~~~~~~~g~t~L~~a~  745 (978)
                      ++|++.+|++++.+|..|.||+++|+
T Consensus       191 ~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          191 VLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             HHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             HHHHHhcCCCCCccCCCCCcHHHHHH
Confidence            99994459999999999999999888

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=5.5e-32  Score=291.26  Aligned_cols=258  Identities=15%  Similarity=0.089  Sum_probs=205.3

Q ss_pred             HHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCC-----------------CCCCChhhhhhhccC
Q psy9384         469 VKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD-----------------NDGRTALSVSALCVP  531 (978)
Q Consensus       469 v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------------~~~~t~l~~a~~~~~  531 (978)
                      +++|++.|++++..+..|.++++     |+.+++++|+++|++++...                 ....+..+.++    
T Consensus        35 v~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~----  105 (327)
T 1sw6_A           35 TSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF----  105 (327)
T ss_dssp             CCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CH----
T ss_pred             HHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHH----
Confidence            99999999999999999999977     99999999999998865411                 01111224444    


Q ss_pred             CCCChHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC---HHHHH
Q psy9384         532 SSDGYAKVVSILLEKGAKVDH-EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH---ASCVA  607 (978)
Q Consensus       532 ~~~~~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~---~~~v~  607 (978)
                       .....+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+   .++++
T Consensus       106 -~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~  184 (327)
T 1sw6_A          106 -DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE  184 (327)
T ss_dssp             -HHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred             -HhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHH
Confidence             45667899999999999999 89999999999999999999999999999999999999999999999998   67778


Q ss_pred             HHHHCC-CCCcccCCCCCcHHHHHHH----cCCHHHHHHHHHCCCcccccc------CCCCCCCCCccccCCCCchHHHH
Q psy9384         608 LLLFWG-AYVDTIDAEGRTVLSVAAA----QGNIDVVNQLLDRGMILGCLA------GGRQTGSLDEQHRDNCGWTPLHY  676 (978)
Q Consensus       608 ~Ll~~g-~~~~~~~~~~~t~L~~A~~----~~~~~iv~~Ll~~~~~~~~~~------~~~~~~~~~~~~~~~~g~t~L~~  676 (978)
                      .|++.+ ++++..+..|.||||+|+.    .|+.+++++|++.+.......      ........+++.++..|.||||.
T Consensus       185 ~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~  264 (327)
T 1sw6_A          185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE  264 (327)
T ss_dssp             HHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHH
T ss_pred             HHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHH
Confidence            888776 6799999999999999999    899999999998742110000      00001127888899999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384         677 AAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNM  745 (978)
Q Consensus       677 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~  745 (978)
                      |+.      +++|+++  +++..|..|.||||+|+..|+.++|++|+++ |++++.+|..|.||||+|+
T Consensus       265 a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          265 NLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             HCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             HHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHH
Confidence            985      8999998  6889999999999999999999999999997 9999999999999999998

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=4.5e-29  Score=238.05  Aligned_cols=159  Identities=38%  Similarity=0.580  Sum_probs=141.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      +.|+.||..|+.++|++|++  .|++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence            46889999999999999998  8899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS  504 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  504 (978)
                      +++++|+++|++++.++..|.||||+|+..|+.++         +++|+++|++++.++..|.|||++|+..|+.+++++
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~---------v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV---------VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999988         999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcc
Q psy9384         505 ILEYDADINQ  514 (978)
Q Consensus       505 Ll~~g~~~~~  514 (978)
                      |+++|++++-
T Consensus       155 Ll~~GA~ie~  164 (169)
T 4gpm_A          155 LEKQGGWLEH  164 (169)
T ss_dssp             HHTC------
T ss_pred             HHHCCCCcCC
Confidence            9999988753

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=5.4e-30  Score=262.87  Aligned_cols=211  Identities=26%  Similarity=0.303  Sum_probs=162.7

Q ss_pred             cccCCCchHHHHHHHcCCHHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy9384         338 MFDSKNQSVLHKLCAENNINLLKTFLKSCE--ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPL  415 (978)
Q Consensus       338 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~--~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L  415 (978)
                      ..|..|.||||+|+..|+.+++++|++...  +.+++..+..|.||||+|+..|+.++|++|+++|++++..+..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            356778888888888888888888877322  236777888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHhCCCC------CCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCC-CCCc
Q psy9384         416 RSASWGGHSAVVKLLLQSGAD------VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS-EGRT  488 (978)
Q Consensus       416 ~~A~~~g~~~iv~~Ll~~g~~------~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~-~~~t  488 (978)
                      |+|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.++         +++|+++|++++..+. .|.|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~~g~t  153 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI---------VELLVSLGADVNAQEPCNGRT  153 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH---------HHHHHHHTCCTTCCCTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCCCCCCCCC
Confidence            888888888888888888765      45566678888888888888887         8888888888887776 7888


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCC--CCCCCCCCHHH
Q psy9384         489 ALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVD--HEDREGMTPLL  562 (978)
Q Consensus       489 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~--~~~~~~~t~L~  562 (978)
                      |||+|+..|+.+++++|+++|++++.++..|.||+++|+     ..++.+++++|+++|++..  .++..+.++..
T Consensus       154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~-----~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  224 (236)
T 1ikn_D          154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW-----GRPSTRIQQQLGQLTLENLQMLPESEDEESYD  224 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT-----TSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHH-----ccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence            888888888888888888888888888888888888887     6777888888888887654  44455555443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.9e-28  Score=244.58  Aligned_cols=196  Identities=29%  Similarity=0.352  Sum_probs=138.2

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc
Q psy9384         376 KHGQTALNVAAHQGFVDAVQILLEAGA-NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG  454 (978)
Q Consensus       376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~  454 (978)
                      ..+.||||.|+..|+.++++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            345677777777777777777776654 6677777777777777777777777777777777777777777777777777


Q ss_pred             CCceeeeeccchHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCccCCCCCCChhhhhhhccCC
Q psy9384         455 GHLEVTIVLGPLCVVKLLL-AAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD-ADINQQDNDGRTALSVSALCVPS  532 (978)
Q Consensus       455 ~~~~i~~~~~~~~vv~~Ll-~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~a~~~~~~  532 (978)
                      |+.++         +++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+.....
T Consensus        83 ~~~~~---------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  153 (201)
T 3hra_A           83 GRTEI---------LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG  153 (201)
T ss_dssp             TCHHH---------HHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC
T ss_pred             CCHHH---------HHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc
Confidence            77776         77777 455567767777777777777777777777777776 66776676777777776643222


Q ss_pred             CCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy9384         533 SDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENE  580 (978)
Q Consensus       533 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g  580 (978)
                      ..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+++|
T Consensus       154 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          154 NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             SHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            223467777777777777777777777777777777777777777765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=1.5e-29  Score=259.62  Aligned_cols=219  Identities=21%  Similarity=0.174  Sum_probs=185.5

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q psy9384         552 HEDREGMTPLLVAAFEGHRDVCEILLENEA----DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVL  627 (978)
Q Consensus       552 ~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~----~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L  627 (978)
                      ..+..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            356788899999999999999998888765    6888888999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcH
Q psy9384         628 SVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDN-DGRAP  706 (978)
Q Consensus       628 ~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~  706 (978)
                      |+|+..|+.+++++|++.+.....        ....+..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tp  154 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHL--------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA  154 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSS--------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhH--------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence            999999999999999998842110        023566788899999999999999999999999999999987 89999


Q ss_pred             HHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccc--cccCCC
Q psy9384         707 LILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLF--TKFSTT  784 (978)
Q Consensus       707 L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--~~~~~g  784 (978)
                      ||+|+..|+.+++++|+++ |++++.++..|.|||++|+     ..++.+++++|+    ++|     ++..  ..+..|
T Consensus       155 L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~-----~~~~~~~~~~Ll----~~g-----a~~~~~~~~~~~  219 (236)
T 1ikn_D          155 LHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTW-----GRPSTRIQQQLG----QLT-----LENLQMLPESED  219 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCT-----TSSCHHHHHHHH----TTS-----CGGGSSCCCCCT
T ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHH-----ccCchHHHHHHH----Hcc-----hhhhhcCCccch
Confidence            9999999999999999997 9999999999999999999     889999999999    999     7655  566667


Q ss_pred             CccchHHHh
Q psy9384         785 NPHISRQEY  793 (978)
Q Consensus       785 ~t~l~~a~~  793 (978)
                      .++...+..
T Consensus       220 ~~~~~~~~~  228 (236)
T 1ikn_D          220 EESYDTESE  228 (236)
T ss_dssp             TTCCCCC--
T ss_pred             HHHHhhhcc
Confidence            777665543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=2.9e-28  Score=249.41  Aligned_cols=203  Identities=24%  Similarity=0.270  Sum_probs=175.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----cccCCCCCcHHHH
Q psy9384         556 EGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV-----DTIDAEGRTVLSV  629 (978)
Q Consensus       556 ~~~t~L~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~~t~L~~  629 (978)
                      .|.||||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.|+++     +..+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            477899999999999999999987 9999999999999999999999999999999998876     5567789999999


Q ss_pred             HHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy9384         630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL  709 (978)
Q Consensus       630 A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~  709 (978)
                      |+..|+.+++++|+++|++++....... .....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  160 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSV-FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI  160 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGG-GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcc-eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            9999999999999999855433221111 112233345589999999999999999999999999999999999999999


Q ss_pred             HHHCCCHHHH----HHHHhhcCCCC------cCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384         710 AAQDGHYHLV----EMFLEQYEANV------NQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL  769 (978)
Q Consensus       710 A~~~~~~~iv----~~Ll~~~~~~~------~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~  769 (978)
                      |+..|+.+++    ++|++. |+++      +.+|..|.|||++|+     ..++.+++++|+    ++|
T Consensus       161 A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~tpl~~A~-----~~g~~~~v~~Ll----~~g  220 (232)
T 2rfa_A          161 LILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTPFKLAG-----VEGNIVMFQHLM----QKR  220 (232)
T ss_dssp             HHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSCCHHHHHH-----HHTCHHHHHHHH----HHH
T ss_pred             HHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCCCHHHHHH-----HcCCHHHHHHHH----hcC
Confidence            9999999988    999997 8887      588999999999999     999999999999    877

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=1.5e-28  Score=234.31  Aligned_cols=159  Identities=47%  Similarity=0.683  Sum_probs=136.5

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      ++|+.||+.|+.++|++|++.|+++|.+|..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHH
Q psy9384         460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKV  539 (978)
Q Consensus       460 ~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  539 (978)
                               +++|+++|+++|.++..|.||||+|+..|+.+++++|+++|++++.++..|+|||++|+     ..++.++
T Consensus        86 ---------v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~-----~~g~~~i  151 (169)
T 4gpm_A           86 ---------VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR-----EHGNEEV  151 (169)
T ss_dssp             ---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHH
T ss_pred             ---------HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH-----HcCCHHH
Confidence                     99999999999999999999999999999999999999988888888887878777777     5677777


Q ss_pred             HHHHHhCCCCCCC
Q psy9384         540 VSILLEKGAKVDH  552 (978)
Q Consensus       540 v~~Ll~~g~~~~~  552 (978)
                      +++|+++|++++.
T Consensus       152 v~~Ll~~GA~ie~  164 (169)
T 4gpm_A          152 VKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHTC------
T ss_pred             HHHHHHCCCCcCC
Confidence            7777777777653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=2e-27  Score=237.10  Aligned_cols=192  Identities=23%  Similarity=0.273  Sum_probs=171.5

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCC-CccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHc
Q psy9384         555 REGMTPLLVAAFEGHRDVCEILLENEA-DQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQ  633 (978)
Q Consensus       555 ~~~~t~L~~a~~~~~~~iv~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  633 (978)
                      ..+.+||+.|+..|+.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            356789999999999999999988876 8888888999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHH
Q psy9384         634 GNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG-AKVDQVDNDGRAPLILAAQ  712 (978)
Q Consensus       634 ~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~  712 (978)
                      |+.+++++|++.+.             .+++..+..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+.
T Consensus        83 ~~~~~~~~Ll~~~~-------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  149 (201)
T 3hra_A           83 GRTEILAYMLKHAT-------------PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG  149 (201)
T ss_dssp             TCHHHHHHHHHHSC-------------CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHhccC-------------cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH
Confidence            99999999995442             677888888999999999999999999999998 8999999999999999999


Q ss_pred             CCC-----HHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Q psy9384         713 DGH-----YHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSL  769 (978)
Q Consensus       713 ~~~-----~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~  769 (978)
                      .++     .+++++|+++ |++++.+|..|.|||++|+     ..++.+++++|+    ++|
T Consensus       150 ~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~-----~~~~~~~~~~Ll----~~G  201 (201)
T 3hra_A          150 LREGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYAN-----QKGYTEISKILA----QYN  201 (201)
T ss_dssp             SSCCSHHHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHH----TCC
T ss_pred             hccchhhHHHHHHHHHHC-CCCCCccCCCCCCHHHHHH-----HcCCHhHHHHHH----hcC
Confidence            887     8999999997 9999999999999999999     889999999998    654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=1.6e-28  Score=255.35  Aligned_cols=194  Identities=27%  Similarity=0.336  Sum_probs=153.3

Q ss_pred             CCCcHHHHHHHhCCHH----HHHHHHHCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcC-----
Q psy9384         377 HGQTALNVAAHQGFVD----AVQILLEAGANINH----TDCEGWTPLRSASWG---GHSAVVKLLLQSGADVNCS-----  440 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~-----  440 (978)
                      .|+||||.||..|+.+    ++++|++.|++++.    .|..|.||||+|+..   |+.+++++|++.|++++..     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3789999999999997    66777788999998    899999999999999   9999999999998776533     


Q ss_pred             ------CCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCC-------------CCcHHHHHHHcCCHHH
Q psy9384         441 ------DMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-------------GRTALIASAYMGHADI  501 (978)
Q Consensus       441 ------~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~-------------~~t~L~~A~~~~~~~~  501 (978)
                            +..|.||||+|+..|+.++         +++|+++|++++..+..             |.||||+|+..|+.++
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~  151 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQC---------VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV  151 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred             cccccccccCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                  3679999999999999999         99999999999988876             7888888888888888


Q ss_pred             HHHHHH---cCCCCccCCCCCCChhhhhhhccCCCCChHH-------HHHHHHhCCCCC-------CCCCCCCCCHHHHH
Q psy9384         502 VSSILE---YDADINQQDNDGRTALSVSALCVPSSDGYAK-------VVSILLEKGAKV-------DHEDREGMTPLLVA  564 (978)
Q Consensus       502 v~~Ll~---~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~t~L~~a  564 (978)
                      +++|++   +|++++.++..|+||||+|+..   ..++.+       ++++|++.|+++       +..+..|.|||++|
T Consensus       152 v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~---~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          152 VTYLLENPHQPASLEATDSLGNTVLHALVMI---ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHhccccCCCcCccCCCCCCHHHHHHHc---ccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence            888888   7777777777777777777621   145555       666666666666       55666666666666


Q ss_pred             HHcCCHHHHHHHHhCCCC
Q psy9384         565 AFEGHRDVCEILLENEAD  582 (978)
Q Consensus       565 ~~~~~~~iv~~Ll~~g~~  582 (978)
                      +..|+.+++++|+++|.+
T Consensus       229 ~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          229 AKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHhCCCC
Confidence            666666666666665543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=3.6e-28  Score=252.74  Aligned_cols=193  Identities=24%  Similarity=0.291  Sum_probs=178.3

Q ss_pred             CCchHHHHHHHcCCHH----HHHHHHHhccCCCccc----cCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCC----
Q psy9384         342 KNQSVLHKLCAENNIN----LLKTFLKSCEALDLEL----VDKHGQTALNVAAHQ---GFVDAVQILLEAGANINH----  406 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~----~v~~ll~~~~~~~~~~----~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~----  406 (978)
                      .|.|+||.|+..|+.+    +++++++  .+.+++.    .|..|.||||+||..   |+.++|++|++.|++++.    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            3789999999999997    5677777  7888888    899999999999999   999999999999887663    


Q ss_pred             -------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-------------CCcHHHHHHhcCCceeeeeccch
Q psy9384         407 -------TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG-------------GRTALRAAAWGGHLEVTIVLGPL  466 (978)
Q Consensus       407 -------~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-------------~~t~l~~A~~~~~~~i~~~~~~~  466 (978)
                             .|..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.++       
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~-------  151 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV-------  151 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH-------
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHH-------
Confidence                   3478999999999999999999999999999998876             9999999999999999       


Q ss_pred             HHHHHHHH---cCCCCcccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------ccCCCCCCChhhhhh
Q psy9384         467 CVVKLLLA---AGAHVNAADSEGRTALIASAY--MGHAD-------IVSSILEYDADI-------NQQDNDGRTALSVSA  527 (978)
Q Consensus       467 ~vv~~Ll~---~g~~~~~~~~~~~t~L~~A~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~t~l~~a~  527 (978)
                        +++|++   +|++++..+..|.||||+|+.  .++.+       ++++|+++|+++       +.++..|.|||++|+
T Consensus       152 --v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  229 (256)
T 2etb_A          152 --VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA  229 (256)
T ss_dssp             --HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred             --HHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHH
Confidence              999999   999999999999999999999  88888       999999999999       899999999999999


Q ss_pred             hccCCCCChHHHHHHHHhCCCCC
Q psy9384         528 LCVPSSDGYAKVVSILLEKGAKV  550 (978)
Q Consensus       528 ~~~~~~~~~~~~v~~Ll~~g~~~  550 (978)
                           ..++.+++++|+++|.+.
T Consensus       230 -----~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          230 -----KEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             -----HTTCHHHHHHHHHHHHHH
T ss_pred             -----HhCCHHHHHHHHhCCCCC
Confidence                 789999999999987653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=1.3e-28  Score=258.61  Aligned_cols=205  Identities=27%  Similarity=0.294  Sum_probs=149.0

Q ss_pred             CCccccCCCCCcHHHHHHHhCCHHHHHHHHH----CCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC
Q psy9384         369 LDLELVDKHGQTALNVAAHQGFVDAVQILLE----AGANIN----HTDCEGWTPLRSASWG---GHSAVVKLLLQSGADV  437 (978)
Q Consensus       369 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~  437 (978)
                      +..+..|..|.||||+||..|+.++|+.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|+++|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            4445677888999999999999998887776    566665    3577899999999987   8999999999987542


Q ss_pred             -------C----cCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCC--------------CCCcHHHH
Q psy9384         438 -------N----CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS--------------EGRTALIA  492 (978)
Q Consensus       438 -------~----~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~--------------~~~t~L~~  492 (978)
                             +    ..+..|.||||+|+..|+.++         +++|+++|++++..+.              .|.||||+
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~---------v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~  154 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTL---------VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSL  154 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCcCccccccccccccccccccCCCCHHHH
Confidence                   2    255689999999999999999         9999999999998886              67888888


Q ss_pred             HHHcCCHHHHHHHHH---cCCCCccCCCCCCChhhhhhhccCCCCCh---------HHHHHHHHhCCCCCC-------CC
Q psy9384         493 SAYMGHADIVSSILE---YDADINQQDNDGRTALSVSALCVPSSDGY---------AKVVSILLEKGAKVD-------HE  553 (978)
Q Consensus       493 A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~a~~~~~~~~~~---------~~~v~~Ll~~g~~~~-------~~  553 (978)
                      |+..|+.+++++|++   +|++++.++..|+||||+|+.     .++         .+++++|++.|++++       ..
T Consensus       155 A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~-----~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~  229 (273)
T 2pnn_A          155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE-----VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT  229 (273)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH-----HCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC
T ss_pred             HHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHH-----ccCcchhHHHHHHHHHHHHHHhhhhccccccccccc
Confidence            888888888888888   777777777777777777773     222         466666666666664       25


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccCCC
Q psy9384         554 DREGMTPLLVAAFEGHRDVCEILLENEA-DQDHID  587 (978)
Q Consensus       554 ~~~~~t~L~~a~~~~~~~iv~~Ll~~g~-~~~~~~  587 (978)
                      +..|.|||++|+..|+.+++++|+++|+ ++....
T Consensus       230 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~  264 (273)
T 2pnn_A          230 NRKGLTPLALAASSGKIGVLAYILQREIHEPECRH  264 (273)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHTC------
T ss_pred             CCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhh
Confidence            5666666666666666666666666666 444333

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=7.5e-28  Score=252.88  Aligned_cols=215  Identities=25%  Similarity=0.268  Sum_probs=163.1

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCC----cCCCCCCcHHHHHHhc---CCceeeeeccchHH
Q psy9384         400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ----SGADVN----CSDMGGRTALRAAAWG---GHLEVTIVLGPLCV  468 (978)
Q Consensus       400 ~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~----~g~~~~----~~~~~~~t~l~~A~~~---~~~~i~~~~~~~~v  468 (978)
                      .++..+..|..|.||||+|+..|+.++|+.|++    .+++++    ..+..|.||||+|+..   |+.++         
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~---------   72 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT---------   72 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHH---------
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHH---------
Confidence            355567788999999999999999998888886    566665    3578899999999987   99999         


Q ss_pred             HHHHHHcCCCC-------cc----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChH
Q psy9384         469 VKLLLAAGAHV-------NA----ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYA  537 (978)
Q Consensus       469 v~~Ll~~g~~~-------~~----~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~  537 (978)
                      +++|+++|++.       +.    .+..|.||||+|+..|+.+++++|+++|++++..+..+..    .           
T Consensus        73 v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~----~-----------  137 (273)
T 2pnn_A           73 IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF----K-----------  137 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG----S-----------
T ss_pred             HHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc----c-----------
Confidence            99999998653       22    4568999999999999999999999999999887763210    0           


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh---CCCCccCCCCCCCcHHHHHHHcCC---------HHH
Q psy9384         538 KVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE---NEADQDHIDKSGRTPLWAAASMGH---------ASC  605 (978)
Q Consensus       538 ~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~---~g~~~~~~~~~~~t~L~~A~~~~~---------~~~  605 (978)
                               ..+....+..|.||||+|+..|+.+++++|++   +|++++..+..|.||||+|+..++         .++
T Consensus       138 ---------~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~  208 (273)
T 2pnn_A          138 ---------KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM  208 (273)
T ss_dssp             ---------SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             ---------cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence                     01223345567778888888888888888888   777887777778888888887776         677


Q ss_pred             HHHHHHCCCCCc-------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9384         606 VALLLFWGAYVD-------TIDAEGRTVLSVAAAQGNIDVVNQLLDRGM  647 (978)
Q Consensus       606 v~~Ll~~g~~~~-------~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~  647 (978)
                      +++|++.|++++       ..+..|.||||+|+..|+.+++++|+++|+
T Consensus       209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            778888777775       367778888888888888888888888776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1e-28  Score=266.82  Aligned_cols=284  Identities=14%  Similarity=0.086  Sum_probs=194.1

Q ss_pred             HHHHHHH-cCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---cccCCCCCcHHHHHHHcCC
Q psy9384         560 PLLVAAF-EGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV---DTIDAEGRTVLSVAAAQGN  635 (978)
Q Consensus       560 ~L~~a~~-~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~~~  635 (978)
                      +++++.. .++.++++++.++|.+.+       ||||.|+..|+.+++++|++.|+..   +..+..+.||||+|+..|+
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~~-------T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~  140 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKSE-------VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH  140 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCHH-------HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCcC-------CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC
Confidence            5555555 467788888888877653       8999999999999999999988732   2334457789999999999


Q ss_pred             HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCcHHHHHH-H
Q psy9384         636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ--VDNDGRAPLILAA-Q  712 (978)
Q Consensus       636 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~-~  712 (978)
                      .+++++|+++|++...         .+++..+   .||||+|+..|+.+++++|+++|++++.  .|..|.||||+|+ .
T Consensus       141 ~eiv~~Ll~~gad~~~---------~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~  208 (376)
T 2aja_A          141 LHVLNRLCELAPTEIM---------AMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  208 (376)
T ss_dssp             HHHHHHHHHSCTTTHH---------HHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhCCCCccc---------cccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHH
Confidence            9999999999832100         0122222   8999999999999999999999999887  7888999999999 9


Q ss_pred             CCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHH
Q psy9384         713 DGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQE  792 (978)
Q Consensus       713 ~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  792 (978)
                      +|+.++|++|+++ |+       .|.|||+.|+     ..|+.+++++|+    ++|     ++++..+    ++++.|+
T Consensus       209 ~G~~eiv~~Ll~~-ga-------~~~taL~~Aa-----~~g~~evv~lL~----~~g-----a~~~~~~----~~l~~A~  262 (376)
T 2aja_A          209 RGHHNVINFLLDC-PV-------MLAYAEIHEF-----EYGEKYVNPFIA----RHV-----NRLKEMH----DAFKLSN  262 (376)
T ss_dssp             TCCHHHHHHHTTS-HH-------HHHHHHHCTT-----TTTTTTHHHHHH----HHH-----HHHHHHH----TTTTTTS
T ss_pred             CCCHHHHHHHHhC-CC-------ccchHHHHHH-----HCCCHHHHHHHH----hcC-----ccccccc----HHHHHHH
Confidence            9999999999985 53       3889999999     899999999999    888     7776654    3677777


Q ss_pred             hhchHHHHH------------HHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccch
Q psy9384         793 YKKRLHILR------------KIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAV  860 (978)
Q Consensus       793 ~~g~~~i~~------------~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~  860 (978)
                      ..|+.++++            .++..+              ..+..+   .+++|++. +                   .
T Consensus       263 ~~g~~~vv~~~~~~~~~~~~~~li~~~--------------~~~~~~---~~~~Ll~~-~-------------------~  305 (376)
T 2aja_A          263 PDGVFDLVTKSECLQGFYMLRNLIRRN--------------DEVLLD---DIRFLLSI-P-------------------G  305 (376)
T ss_dssp             SSSCCCCSSHHHHHHHHHHHHHHHHHC--------------CGGGHH---HHHHHHTS-T-------------------T
T ss_pred             HCCChhhhcHHhhhhhHHHHHHHHHcc--------------hhhHHH---HHHHHHhC-h-------------------h
Confidence            777666442            222211              112233   55555544 1                   2


Q ss_pred             hhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHH
Q psy9384         861 PSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ  937 (978)
Q Consensus       861 v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~  937 (978)
                      ++.+...|++++     .+    .|||++|+..|+.++|++|++.|   ..++..|.|++.+|..+|+.++++.-.+
T Consensus       306 vk~l~~~g~~~n-----~~----~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          306 IKALAPTATIPG-----DA----NELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             TGGGSSCCSSTT-----CC----CHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC---------------------
T ss_pred             hhhhhccCCCCC-----Cc----cHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHH
Confidence            344555666654     33    68999999999999999999876   5567888999999999999998887544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=3.8e-26  Score=221.17  Aligned_cols=169  Identities=28%  Similarity=0.348  Sum_probs=152.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         343 NQSVLHKLCAENNINLLKTFLKSCEALD-LELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      +.++||.|+..|+.+.++++++  .+.. ++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLR--KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHT--TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHH--cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence            3578999999999999999998  4544 788899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI  501 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~  501 (978)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..|.|||++|+..|+.++
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC---------VEALLARGADLTTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCccccCCCCCCHHHHHHHhCcHHH
Confidence            99999999999999999999999999999999999999         999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCccCCCCCCCh
Q psy9384         502 VSSILEYDADINQQDNDGRTA  522 (978)
Q Consensus       502 v~~Ll~~g~~~~~~~~~~~t~  522 (978)
                      +++|+++|+++...+..+.||
T Consensus       151 ~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          151 QQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHhcccCCCCCC
Confidence            999999998887777666654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=1.3e-26  Score=241.79  Aligned_cols=201  Identities=24%  Similarity=0.290  Sum_probs=162.5

Q ss_pred             CCCchHHHHHHHcCCHHH----HHHHHHhccCCCccccC----CCCCcHHHHHH---HhCCHHHHHHHHHCCCC------
Q psy9384         341 SKNQSVLHKLCAENNINL----LKTFLKSCEALDLELVD----KHGQTALNVAA---HQGFVDAVQILLEAGAN------  403 (978)
Q Consensus       341 ~~~~~~l~~a~~~~~~~~----v~~ll~~~~~~~~~~~~----~~~~t~L~~A~---~~g~~~~v~~Ll~~g~~------  403 (978)
                      ..++++||.|+..|+.+.    ++++++  .+.+++..+    ..|.||||+|+   ..|+.++|++|++.|++      
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLT--HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            467899999999999995    555555  566666555    77999999999   77999999999998743      


Q ss_pred             -----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC--------------CCCCcHHHHHHhcCCceeeeecc
Q psy9384         404 -----INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD--------------MGGRTALRAAAWGGHLEVTIVLG  464 (978)
Q Consensus       404 -----~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--------------~~~~t~l~~A~~~~~~~i~~~~~  464 (978)
                           ++..|..|+||||+|+..|+.++|++|+++|++++..+              ..|.||||+|+..|+.++     
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~-----  155 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI-----  155 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH-----
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH-----
Confidence                 45556689999999999999999999999999999988              589999999999999999     


Q ss_pred             chHHHHHHHH---cCCCCcccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCccCCCCCCChhhhhhhccCC
Q psy9384         465 PLCVVKLLLA---AGAHVNAADSEGRTALIASAYMGH---------ADIVSSILEYDADINQQDNDGRTALSVSALCVPS  532 (978)
Q Consensus       465 ~~~vv~~Ll~---~g~~~~~~~~~~~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  532 (978)
                          +++|++   +|++++.++..|.||||+|+..++         .+++++|+++|++++....               
T Consensus       156 ----v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~---------------  216 (260)
T 3jxi_A          156 ----VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN---------------  216 (260)
T ss_dssp             ----HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC---------------
T ss_pred             ----HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc---------------
Confidence                999999   999999999999999999998877         5777777777766532100               


Q ss_pred             CCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Q psy9384         533 SDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ  583 (978)
Q Consensus       533 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~  583 (978)
                                      ..+..+..|.||||+|+..|+.+++++|+++|.+.
T Consensus       217 ----------------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          217 ----------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             ----------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----------------hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence                            01335556666777777777777777777666543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=7.3e-26  Score=223.61  Aligned_cols=162  Identities=31%  Similarity=0.364  Sum_probs=123.7

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9384         337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR  416 (978)
Q Consensus       337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~  416 (978)
                      +..|..|.||||+|+..|+.+++++|++  .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            4456677777777777777777777777  56677777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q psy9384         417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM  496 (978)
Q Consensus       417 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~  496 (978)
                      +|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..|.||+++|+..
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEI---------VKKLLELGADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence            7777777777777777777777777777777777777777777         7777777777777777777777777777


Q ss_pred             CCHHHHHHHHHcC
Q psy9384         497 GHADIVSSILEYD  509 (978)
Q Consensus       497 ~~~~~v~~Ll~~g  509 (978)
                      |+.+++++|+++|
T Consensus       178 ~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          178 GRQEVIKIFTEVR  190 (192)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhcc
Confidence            7777777777653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=2.9e-25  Score=213.97  Aligned_cols=158  Identities=37%  Similarity=0.539  Sum_probs=139.0

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384         341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW  420 (978)
Q Consensus       341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  420 (978)
                      ..+.+++++|+..|+.+++++|++  .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            345678999999999999999998  788888888889999999999999999999999998888888889999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384         421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD  500 (978)
Q Consensus       421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~  500 (978)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..|.|||++|+..|+.+
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI---------VEVLLKNGADVNAQDKFGKTAFDISIDNGNED  160 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            999999999999999888888888999999999998888         99999999998888888999999999999999


Q ss_pred             HHHHHHHcC
Q psy9384         501 IVSSILEYD  509 (978)
Q Consensus       501 ~v~~Ll~~g  509 (978)
                      ++++|++.|
T Consensus       161 ~~~~L~~~G  169 (169)
T 2y1l_E          161 LAEILQKLN  169 (169)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHcC
Confidence            999988765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=5e-26  Score=237.26  Aligned_cols=205  Identities=20%  Similarity=0.189  Sum_probs=168.5

Q ss_pred             CCCCCHHHHHHHcCCHHH----HHHHHhCCCCccCCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCC--------
Q psy9384         555 REGMTPLLVAAFEGHRDV----CEILLENEADQDHID----KSGRTPLWAAA---SMGHASCVALLLFWGAY--------  615 (978)
Q Consensus       555 ~~~~t~L~~a~~~~~~~i----v~~Ll~~g~~~~~~~----~~~~t~L~~A~---~~~~~~~v~~Ll~~g~~--------  615 (978)
                      ..+.++|+.|++.|+.+.    +++|++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|++        
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            456789999999999984    555555888888665    66999999998   67999999999988743        


Q ss_pred             ---CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHh-
Q psy9384         616 ---VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE-  691 (978)
Q Consensus       616 ---~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-  691 (978)
                         .+..+..|.||||+|+..|+.+++++|+++|++++...........+.+..+..|.||||+|+..|+.+++++|++ 
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence               3444558999999999999999999999999433222111111111111222689999999999999999999999 


Q ss_pred             --CCCCCCCCCCCCCcHHHHHHHCCC---------HHHHHHHHhhcCCCC-------cCCCCCCCcHHHHHHhcccchhH
Q psy9384         692 --AGAKVDQVDNDGRAPLILAAQDGH---------YHLVEMFLEQYEANV-------NQKSHDGRTALRVNMKNVTKLSF  753 (978)
Q Consensus       692 --~g~~~~~~d~~g~t~L~~A~~~~~---------~~iv~~Ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~~~~~  753 (978)
                        +|++++..|..|.||||+|+..++         .+++++|+++ |+++       +.+|..|.||||+|+     ..+
T Consensus       163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~-----~~g  236 (260)
T 3jxi_A          163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAA-----KTG  236 (260)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHH-----HTT
T ss_pred             cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHH-----HcC
Confidence              999999999999999999998887         7999999997 9998       679999999999999     999


Q ss_pred             HHHHHHHHHHHHHhcC
Q psy9384         754 WYLLIQPLLNIILSSL  769 (978)
Q Consensus       754 ~~~~~~~Ll~~~~~~~  769 (978)
                      +.+++++|+    ++|
T Consensus       237 ~~~~v~~Ll----~~g  248 (260)
T 3jxi_A          237 KIGIFQHII----RRE  248 (260)
T ss_dssp             CHHHHHHHH----HHH
T ss_pred             CHHHHHHHH----HhC
Confidence            999999999    887

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1.6e-25  Score=214.54  Aligned_cols=158  Identities=28%  Similarity=0.370  Sum_probs=135.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      ...++|+.|+..|+.+++++|++  .+.+++..+..|.||||+|+. |+.+++++|++.|++++..+..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            34578888888888888888888  778888888888888888888 888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcCCHH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH-VNAADSEGRTALIASAYMGHAD  500 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~-~~~~~~~~~t~L~~A~~~~~~~  500 (978)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++ ++..+..|.|||++|+..|+.+
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV---------VEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH---------HHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            88888888888888888888888888888888888888         8888888887 5788888888888888888888


Q ss_pred             HHHHHHHcCCC
Q psy9384         501 IVSSILEYDAD  511 (978)
Q Consensus       501 ~v~~Ll~~g~~  511 (978)
                      ++++|+++|++
T Consensus       152 ~~~~Ll~~GAd  162 (162)
T 1ihb_A          152 VVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHhCCC
Confidence            88888888864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=1.6e-25  Score=215.54  Aligned_cols=160  Identities=28%  Similarity=0.351  Sum_probs=146.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      .|.||||.|+..|+.+++++|++  .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            46789999999999999999998  6788888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADI  501 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~  501 (978)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..|.||+++|+..|+.++
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  150 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC---------VKMLLESGADPTIETDSGYNSMDLAVALGYRSV  150 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            99999999999999999999999999999999999998         999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCC
Q psy9384         502 VSSILEYDADI  512 (978)
Q Consensus       502 v~~Ll~~g~~~  512 (978)
                      +++|++++.++
T Consensus       151 ~~~L~~~~~~~  161 (167)
T 3v31_A          151 QQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=4e-26  Score=238.93  Aligned_cols=188  Identities=28%  Similarity=0.404  Sum_probs=120.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHH----
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA-NINHTDCEGWTPLRSAS----  419 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~----  419 (978)
                      +++|.|+..|+++.++.+++......++..|..|.||||+||..|+.++|++|++.|+ +++..+..|.||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            3456666667777776666532233356666777777777777777777777777776 66667777777777776    


Q ss_pred             -HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy9384         420 -WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH  498 (978)
Q Consensus       420 -~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~  498 (978)
                       ..++.+++++|++.|.+.+..+..|.||||+|+..|+.++         +++|+++|++++..+..|.||||+|+..|+
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~---------v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDV---------VKALLACEADVNVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH---------HHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence             4466666777776666666666666666666666666666         666666666666666666666666666666


Q ss_pred             HHHHHHHHH-cCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhC
Q psy9384         499 ADIVSSILE-YDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEK  546 (978)
Q Consensus       499 ~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~  546 (978)
                      .+++++|++ .|++++.++..|.|||++|+     ..++.+++++|+++
T Consensus       229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~-----~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISLTDRDGSTALMVAL-----DAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCcCCCCCCHHHHHH-----HcCCHHHHHHHHhc
Confidence            666666666 56665555555555555555     34445555555443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=3.9e-25  Score=214.04  Aligned_cols=169  Identities=28%  Similarity=0.345  Sum_probs=150.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC-ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCC
Q psy9384         557 GMTPLLVAAFEGHRDVCEILLENEAD-QDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN  635 (978)
Q Consensus       557 ~~t~L~~a~~~~~~~iv~~Ll~~g~~-~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~  635 (978)
                      +.+||+.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            35799999999999999999999887 78888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q psy9384         636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH  715 (978)
Q Consensus       636 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  715 (978)
                      .+++++|+++|              .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+
T Consensus        82 ~~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           82 TDIVGLLLERD--------------VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY  147 (172)
T ss_dssp             HHHHHHHHTTT--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHHcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc
Confidence            99999999999              7888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCcCCCCCCCcH
Q psy9384         716 YHLVEMFLEQYEANVNQKSHDGRTA  740 (978)
Q Consensus       716 ~~iv~~Ll~~~~~~~~~~~~~g~t~  740 (978)
                      .+++++|+++ ++++...+..|.||
T Consensus       148 ~~~~~~L~~~-~~~~~~~~~~~~~p  171 (172)
T 3v30_A          148 RKVQQVIENH-ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHH-HHHHSCC-------
T ss_pred             HHHHHHHHHH-HHHHhcccCCCCCC
Confidence            9999999997 88888888777776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=8e-25  Score=210.87  Aligned_cols=159  Identities=44%  Similarity=0.656  Sum_probs=138.5

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc
Q psy9384         375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG  454 (978)
Q Consensus       375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~  454 (978)
                      ...+.++|+.||..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCC
Q psy9384         455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD  534 (978)
Q Consensus       455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  534 (978)
                      |+.++         +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+     ..
T Consensus        91 ~~~~~---------~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~-----~~  156 (169)
T 2y1l_E           91 GHLEI---------VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI-----DN  156 (169)
T ss_dssp             TCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HT
T ss_pred             CCHHH---------HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-----Hh
Confidence            99888         99999999999988989999999999999999999999988888877777777777777     56


Q ss_pred             ChHHHHHHHHhCC
Q psy9384         535 GYAKVVSILLEKG  547 (978)
Q Consensus       535 ~~~~~v~~Ll~~g  547 (978)
                      ++.+++++|++.|
T Consensus       157 ~~~~~~~~L~~~G  169 (169)
T 2y1l_E          157 GNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcC
Confidence            6777777777654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=2e-25  Score=233.68  Aligned_cols=188  Identities=23%  Similarity=0.325  Sum_probs=143.3

Q ss_pred             ChhhhhhhccCCCCChHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CccCCCCCCCcHHHHH
Q psy9384         521 TALSVSALCVPSSDGYAKVVSILLEKGAK--VDHEDREGMTPLLVAAFEGHRDVCEILLENEA-DQDHIDKSGRTPLWAA  597 (978)
Q Consensus       521 t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~-~~~~~~~~~~t~L~~A  597 (978)
                      ++++.++     ..++.+.++.+++.+.+  +|..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.|||+.|
T Consensus        78 ~~l~~a~-----~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           78 SDAHPEL-----VRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             TTCCHHH-----HHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             cCCCHHH-----HHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            4455555     34566666666655544  66677778888888888888888888888877 7777777788888887


Q ss_pred             H-----HcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCch
Q psy9384         598 A-----SMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWT  672 (978)
Q Consensus       598 ~-----~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  672 (978)
                      +     ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|              .+++.+|..|+|
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g--------------ad~n~~d~~G~T  218 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE--------------ADVNVQDDDGST  218 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--------------CCTTCCCTTSCC
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC--------------CCCCCCCCCCCC
Confidence            7     557777888888888777777777888888888888888888888887              677777778888


Q ss_pred             HHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcC
Q psy9384         673 PLHYAAIEGHEEVCRALLE-AGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYE  727 (978)
Q Consensus       673 ~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~  727 (978)
                      |||+|+..|+.+++++|++ .|++++..|..|.|||++|+..|+.+++++|+++.+
T Consensus       219 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          219 ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            8888888888888888887 688888888888888888888888888888887643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=3.1e-25  Score=216.12  Aligned_cols=164  Identities=26%  Similarity=0.317  Sum_probs=110.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384         343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG  422 (978)
Q Consensus       343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g  422 (978)
                      +.++|+.|+..|+.+++++|++. .+.+++..+..|.||||+||..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            44566777777777777776663 24556666666677777777777777777777777666666666667777777777


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q psy9384         423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV  502 (978)
Q Consensus       423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v  502 (978)
                      +.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..|.||+++|+..++.+++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV---------AEDLVANGALVSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH---------HHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHH
Confidence            7777777777776666666666667777766666666         6666666666666666666666666666666666


Q ss_pred             HHHHHcCCCCccCC
Q psy9384         503 SSILEYDADINQQD  516 (978)
Q Consensus       503 ~~Ll~~g~~~~~~~  516 (978)
                      ++|+++|++++..+
T Consensus       155 ~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          155 ERAEKMGQNLNRIP  168 (179)
T ss_dssp             HHHHHTTCCCSCBC
T ss_pred             HHHHHhhcCcccCC
Confidence            66666666665544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=8.8e-25  Score=215.82  Aligned_cols=161  Identities=29%  Similarity=0.335  Sum_probs=150.0

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHH
Q psy9384         551 DHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA  630 (978)
Q Consensus       551 ~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A  630 (978)
                      +.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            55778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy9384         631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA  710 (978)
Q Consensus       631 ~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  710 (978)
                      +..++.+++++|+++|              .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||+++|
T Consensus       109 ~~~~~~~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  174 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHG--------------ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA  174 (192)
T ss_dssp             HHHTCHHHHHHHHHTT--------------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             HHcCCHHHHHHHHHCC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999998              78888899999999999999999999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHhh
Q psy9384         711 AQDGHYHLVEMFLEQ  725 (978)
Q Consensus       711 ~~~~~~~iv~~Ll~~  725 (978)
                      +..|+.+++++|++.
T Consensus       175 ~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          175 RIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHhc
Confidence            999999999999886

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=4e-25  Score=211.73  Aligned_cols=157  Identities=29%  Similarity=0.403  Sum_probs=133.4

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      ...||||.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45689999999999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CccCCCCCCChhhhhhhccCCCCC
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD-INQQDNDGRTALSVSALCVPSSDG  535 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~l~~a~~~~~~~~~  535 (978)
                      .++         +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||+++|+     ..+
T Consensus        83 ~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~-----~~~  148 (162)
T 1ihb_A           83 LDT---------LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR-----LYG  148 (162)
T ss_dssp             HHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH-----HTT
T ss_pred             HHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH-----HcC
Confidence            888         9999999999999999999999999999999999999998887 4666666666666666     455


Q ss_pred             hHHHHHHHHhCCC
Q psy9384         536 YAKVVSILLEKGA  548 (978)
Q Consensus       536 ~~~~v~~Ll~~g~  548 (978)
                      +.+++++|+++|+
T Consensus       149 ~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          149 RNEVVSLMQANGA  161 (162)
T ss_dssp             CHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHhCC
Confidence            6666666666654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=1.6e-27  Score=257.40  Aligned_cols=278  Identities=13%  Similarity=0.070  Sum_probs=172.5

Q ss_pred             cHHHHHHH-cCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC---CCCC
Q psy9384         625 TVLSVAAA-QGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKV---DQVD  700 (978)
Q Consensus       625 t~L~~A~~-~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d  700 (978)
                      ++++++.. .++.+++++++++|              .+       +.||||+|+..|+.+++++|+++|+..   +..+
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g--------------~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~  125 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKG--------------IK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ  125 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHT--------------CC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcC--------------CC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc
Confidence            34555554 46677777877766              22       348888888888888888888887622   1233


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHhhcCCCC---cCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCccccc
Q psy9384         701 NDGRAPLILAAQDGHYHLVEMFLEQYEANV---NQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDL  777 (978)
Q Consensus       701 ~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~---~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  777 (978)
                      ..|.||||+|+.+|+.++|++|+++ |+++   +..+.+ .||||+|+     ..|+.+++++|+    ++|     +++
T Consensus       126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~-~TpLh~Aa-----~~G~~eiv~~Ll----~~g-----a~~  189 (376)
T 2aja_A          126 AENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN-YHAFRLAA-----ENGHLHVLNRLC----ELA-----PTE  189 (376)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-HHHHHHHH-----HTTCHHHHHHHH----HSC-----GGG
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-CCHHHHHH-----HCCCHHHHHHHH----HcC-----Ccc
Confidence            4567788888888888888888886 7542   222222 78888888     788888888888    888     777


Q ss_pred             cc--ccCCCCccchHHH-hhchHHHHHHHHHhcccccchhhhhhhhhhhcccccccchhhhcccCCCccccccccccccc
Q psy9384         778 FT--KFSTTNPHISRQE-YKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQT  854 (978)
Q Consensus       778 ~~--~~~~g~t~l~~a~-~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl  854 (978)
                      +.  .+..|.|||+.|+ ..|+.+++++|++.+ ..|.|||+  .|+..|+.+   ++++|+++ |++++..+    +++
T Consensus       190 ~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a~~~taL~--~Aa~~g~~e---vv~lL~~~-ga~~~~~~----~~l  258 (376)
T 2aja_A          190 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEI--HEFEYGEKY---VNPFIARH-VNRLKEMH----DAF  258 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-HHHHHHHH--CTTTTTTTT---HHHHHHHH-HHHHHHHH----TTT
T ss_pred             chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-CccchHHH--HHHHCCCHH---HHHHHHhc-Cccccccc----HHH
Confidence            66  7777888888888 888888888888865 45888888  888888888   88888888 88776654    345


Q ss_pred             ccccc-----hhhhhhhccCCchhhhhhhCCCCCCch---HHHHHHhCCHHHHHHHHH---------cCCCCCCCcccCc
Q psy9384         855 SSSSA-----VPSATDEHFSRDTHMRIILGSSKVGEK---ISIAAQEGHEDCVRLLLH---------YGADPKHSDHCGR  917 (978)
Q Consensus       855 ~~a~~-----~v~~L~~~g~~~~~~~~~~g~~~~~t~---L~~A~~~g~~~iv~~Ll~---------~ga~~~~~d~~g~  917 (978)
                      +.|+.     +++....          ..+    ...   |..+...+..+.+++|++         .|++++.    +.
T Consensus       259 ~~A~~~g~~~vv~~~~~----------~~~----~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~----~~  320 (376)
T 2aja_A          259 KLSNPDGVFDLVTKSEC----------LQG----FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD----AN  320 (376)
T ss_dssp             TTTSSSSCCCCSSHHHH----------HHH----HHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC----CC
T ss_pred             HHHHHCCChhhhcHHhh----------hhh----HHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCC----cc
Confidence            55443     1110000          000    000   111112234667777776         4555553    45


Q ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCcccccchhhhhhhhcChhHHHHHHHhh
Q psy9384         918 NAFRVAAKSGHETVLRLLKQYADDSEYFVHYYYYYNSAKSGHETVLRLLKQY  969 (978)
Q Consensus       918 t~l~~A~~~~~~~~v~~L~~~g~~~~~~~~~~~l~~A~~~~~~~~~~~L~~~  969 (978)
                      |||++|+..|+.++|++|++.| .+....+.|++..|-.+|+.++.+.-..+
T Consensus       321 ~~L~~A~~~g~~e~v~lLl~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          321 ELLRLALRLGNQGACALLLSIP-SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTSH-HHHHSCC----------------------
T ss_pred             HHHHHHHHcCcHHHHHHHHcCh-HHHHHHHHhccccccccccccHHHHHHHH
Confidence            8999999999999999999876 33445688999999999999998876654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=1.5e-24  Score=205.10  Aligned_cols=150  Identities=30%  Similarity=0.382  Sum_probs=137.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy9384         344 QSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH  423 (978)
Q Consensus       344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~  423 (978)
                      .++|+.|+..|+.+++++|++  .+.+.+ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            478999999999999999999  566655 57889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384         424 SAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS  503 (978)
Q Consensus       424 ~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~  503 (978)
                      .+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++.++..|.|||++|+..|+.++++
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV---------VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999998         99999999999999999999999999999999998


Q ss_pred             HH
Q psy9384         504 SI  505 (978)
Q Consensus       504 ~L  505 (978)
                      +|
T Consensus       151 ~L  152 (153)
T 1awc_B          151 IL  152 (153)
T ss_dssp             HH
T ss_pred             Hh
Confidence            87

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=4.2e-25  Score=212.17  Aligned_cols=157  Identities=33%  Similarity=0.390  Sum_probs=83.2

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhc
Q psy9384         376 KHGQTALNVAAHQGFVDAVQILLE-AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWG  454 (978)
Q Consensus       376 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~  454 (978)
                      ..+.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            334455555555555555555554 2334444444555555555555555555555555555555555555555555555


Q ss_pred             CCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCC
Q psy9384         455 GHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSD  534 (978)
Q Consensus       455 ~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  534 (978)
                      |+.++         +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|.     . 
T Consensus        86 ~~~~~---------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~-----~-  150 (165)
T 3twr_A           86 GHYEV---------AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-----D-  150 (165)
T ss_dssp             TCHHH---------HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC-----T-
T ss_pred             CcHHH---------HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh-----c-
Confidence            55555         55555555555555555555555555555555555555555555555555555555543     2 


Q ss_pred             ChHHHHHHHHhCC
Q psy9384         535 GYAKVVSILLEKG  547 (978)
Q Consensus       535 ~~~~~v~~Ll~~g  547 (978)
                      ++.+++++|++.|
T Consensus       151 ~~~~i~~~L~~~g  163 (165)
T 3twr_A          151 GDTDIQDLLRGDA  163 (165)
T ss_dssp             TCHHHHHHHHTC-
T ss_pred             CChHHHHHHhhcc
Confidence            4445555555554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=1.8e-24  Score=210.68  Aligned_cols=166  Identities=23%  Similarity=0.333  Sum_probs=155.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG  455 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  455 (978)
                      .+.++||.||..|+.++|++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            467899999999999999999998 6779999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCC
Q psy9384         456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG  535 (978)
Q Consensus       456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  535 (978)
                      +.++         +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+     ..+
T Consensus        84 ~~~~---------v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~-----~~~  149 (179)
T 3f6q_A           84 HRDI---------VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK-----APL  149 (179)
T ss_dssp             CHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC-----HHH
T ss_pred             CHHH---------HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH-----HHH
Confidence            9999         99999999999999999999999999999999999999999999999999999999998     678


Q ss_pred             hHHHHHHHHhCCCCCCCCCCC
Q psy9384         536 YAKVVSILLEKGAKVDHEDRE  556 (978)
Q Consensus       536 ~~~~v~~Ll~~g~~~~~~~~~  556 (978)
                      +.+++++|++.|++++..+..
T Consensus       150 ~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          150 RELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             HHHHHHHHHHTTCCCSCBCCC
T ss_pred             HHHHHHHHHHhhcCcccCCcc
Confidence            899999999999998876543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=3e-24  Score=206.60  Aligned_cols=156  Identities=29%  Similarity=0.348  Sum_probs=122.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCC
Q psy9384         556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN  635 (978)
Q Consensus       556 ~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~  635 (978)
                      .|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            35677888888888888888777777777777777788888888788888888887777777777777788888887778


Q ss_pred             HHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q psy9384         636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH  715 (978)
Q Consensus       636 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  715 (978)
                      .+++++|+++|              .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+
T Consensus        82 ~~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           82 TDIVKMLLDCG--------------VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             HHHHHHHHHHT--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHHCC--------------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence            88888887777              6667777777788888877778888888887777777777777788888887777


Q ss_pred             HHHHHHHHhh
Q psy9384         716 YHLVEMFLEQ  725 (978)
Q Consensus       716 ~~iv~~Ll~~  725 (978)
                      .+++++|+++
T Consensus       148 ~~~~~~L~~~  157 (167)
T 3v31_A          148 RSVQQVIESH  157 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877777775

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.5e-26  Score=234.03  Aligned_cols=186  Identities=16%  Similarity=0.027  Sum_probs=148.0

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHH
Q psy9384         665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVN  744 (978)
Q Consensus       665 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a  744 (978)
                      ..+..+.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHH
Confidence            4455677899999999999999999999999999999999999999999999999999997 999999999999999999


Q ss_pred             HhcccchhHHHHHHHHHHHHHHhcCCCCccccccccc-CCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhh
Q psy9384         745 MKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKF-STTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWL  823 (978)
Q Consensus       745 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~  823 (978)
                      +     ..++.+++++|+    ++|     ++++..+ ..|.|||+.|                           .++..
T Consensus        95 ~-----~~g~~~~v~~Ll----~~g-----a~~~~~~~~~g~tpL~~A---------------------------~a~~~  133 (229)
T 2vge_A           95 A-----SCNDTVICMALV----QHG-----AAIFATTLSDGATAFEKC---------------------------DPYRE  133 (229)
T ss_dssp             H-----HTTCHHHHHHHH----TTT-----CCTTCCCSSTTCCTGGGC---------------------------CTTST
T ss_pred             H-----HcCCHHHHHHHH----HcC-----CCcccccCCCCCCHHHHH---------------------------HHHhc
Confidence            9     899999999999    999     8888875 3555554444                           11566


Q ss_pred             cccccccchhhhcccCCCcccccccccccccccccc--hhhhhhhccCC--chhhhhhhCCCCCCchHHHHHHhCCHHHH
Q psy9384         824 LDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA--VPSATDEHFSR--DTHMRIILGSSKVGEKISIAAQEGHEDCV  899 (978)
Q Consensus       824 g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~--~v~~L~~~g~~--~~~~~~~~g~~~~~t~L~~A~~~g~~~iv  899 (978)
                      |+.+   ++++|++. |++++..+..+.||++.++.  ..++|++.|++  ++.++ ..|    .||||+|+..|+.++|
T Consensus       134 ~~~~---~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d-~~G----~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          134 GYAD---CATYLADV-EQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRD-GPE----ETDWWWAALHGQEGYV  204 (229)
T ss_dssp             THHH---HHHHHHHH-HHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESS-CTT----CSSEEEEEETTEEEEE
T ss_pred             ChHH---HHHHHHHc-CCCcccccCCchHHHHHHhhccccccCccccccccccccC-CCc----ccHHHHHHHcCCccee
Confidence            6666   66666666 77777777777777764444  55666666666  44555 556    7777777777777776


Q ss_pred             HH
Q psy9384         900 RL  901 (978)
Q Consensus       900 ~~  901 (978)
                      +.
T Consensus       205 ~~  206 (229)
T 2vge_A          205 PR  206 (229)
T ss_dssp             EG
T ss_pred             eh
Confidence            64

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=2.2e-24  Score=207.07  Aligned_cols=161  Identities=29%  Similarity=0.367  Sum_probs=149.6

Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy9384         339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSA  418 (978)
Q Consensus       339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A  418 (978)
                      .+..+.++|+.|+..|+.+++++|++. .+.+.+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            456778999999999999999999985 4567777888899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy9384         419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH  498 (978)
Q Consensus       419 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~  498 (978)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++.++..|.||+++|+. ++
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~  152 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI---------CKLLLQHGADPTKKNRDGNTPLDLVKD-GD  152 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCTGGGSCT-TC
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCCcccCCCCCChhHhHhc-CC
Confidence            99999999999999999999999999999999999999999         999999999999999999999999877 99


Q ss_pred             HHHHHHHHHcCC
Q psy9384         499 ADIVSSILEYDA  510 (978)
Q Consensus       499 ~~~v~~Ll~~g~  510 (978)
                      .+++++|+++|+
T Consensus       153 ~~i~~~L~~~gA  164 (165)
T 3twr_A          153 TDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHHTC--
T ss_pred             hHHHHHHhhccc
Confidence            999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=3.2e-24  Score=203.88  Aligned_cols=154  Identities=28%  Similarity=0.387  Sum_probs=142.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy9384         343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGG  422 (978)
Q Consensus       343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g  422 (978)
                      +.++|+.|+..|+.+.+++|++. .+.+++..+..|.||||+ |..|+.+++++|++.|++++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            35889999999999999999985 456888899999999999 9999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q psy9384         423 HSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIV  502 (978)
Q Consensus       423 ~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v  502 (978)
                      +.+++++|+++|++++..+..|.||||+|+..|+.++         +++|++. ++++..+..|.|||++|+..|+.+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---------v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV---------VSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH---------HHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHH---------HHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            9999999999999999999999999999999999998         9999998 99999999999999999999999999


Q ss_pred             HHHHHc
Q psy9384         503 SSILEY  508 (978)
Q Consensus       503 ~~Ll~~  508 (978)
                      ++|+++
T Consensus       150 ~~Ll~~  155 (156)
T 1bd8_A          150 DILQGH  155 (156)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=1.2e-23  Score=198.95  Aligned_cols=149  Identities=33%  Similarity=0.432  Sum_probs=94.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384         559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV  638 (978)
Q Consensus       559 t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~i  638 (978)
                      ++|+.|+..|+.+++++|+++|++++ .+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   82 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence            46666666666666666666666554 35556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHH
Q psy9384         639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHL  718 (978)
Q Consensus       639 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~i  718 (978)
                      +++|+++|              .+++.++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+.+|+.++
T Consensus        83 v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B           83 VEVLLKHG--------------ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHTTT--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcC--------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence            66666666              4555566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHH
Q psy9384         719 VEMF  722 (978)
Q Consensus       719 v~~L  722 (978)
                      +++|
T Consensus       149 ~~~L  152 (153)
T 1awc_B          149 AEIL  152 (153)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=8.4e-25  Score=221.21  Aligned_cols=155  Identities=21%  Similarity=0.157  Sum_probs=122.0

Q ss_pred             HHHHHHCCCCCcccCC---CCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCC
Q psy9384         606 VALLLFWGAYVDTIDA---EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH  682 (978)
Q Consensus       606 v~~Ll~~g~~~~~~~~---~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  682 (978)
                      ++.|+++|++++..+.   ++.||||.|+..|+.+++++|++.|              .+++.++..|.||||+|+..|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--------------~~~~~~d~~g~tpLh~A~~~g~   66 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM--------------NDPSQPNEEGITALHNAICGAN   66 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--------------SCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC--------------CCCCCCCCCCCCHHHHHHHcCC
Confidence            3566777777654433   4556788899999999999999888              6777888889999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCC-CCCCcHHHHH--HhcccchhHHHHHHH
Q psy9384         683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS-HDGRTALRVN--MKNVTKLSFWYLLIQ  759 (978)
Q Consensus       683 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~-~~g~t~L~~a--~~~~~~~~~~~~~~~  759 (978)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|++. |++++..+ ..|.|||++|  +     ..++.++++
T Consensus        67 ~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~-----~~~~~~~v~  140 (229)
T 2vge_A           67 YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPY-----REGYADCAT  140 (229)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTT-----STTHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHH-----hcChHHHHH
Confidence            9999999999999998888899999999999999999999987 89988886 5899999998  7     888899999


Q ss_pred             HHHHHHHhcCCCCcccccccccCCCCccch
Q psy9384         760 PLLNIILSSLFPLTVEDLFTKFSTTNPHIS  789 (978)
Q Consensus       760 ~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~  789 (978)
                      +|+    +.|     ++++..+..|.++++
T Consensus       141 ~Ll----~~g-----a~~~~~~~~~~~~l~  161 (229)
T 2vge_A          141 YLA----DVE-----QSMGLMNSGAVYALW  161 (229)
T ss_dssp             HHH----HHH-----HHTTTSGGGEEEESS
T ss_pred             HHH----HcC-----CCcccccCCchHHHH
Confidence            999    888     888877655555544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=1.5e-24  Score=221.98  Aligned_cols=214  Identities=18%  Similarity=0.094  Sum_probs=145.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccC
Q psy9384         588 KSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRD  667 (978)
Q Consensus       588 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  667 (978)
                      ..|.|||+.|+..++.+.++.|+++|++++.. ..+.||||.|+..|+.+++++|++.|              .+++.++
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g--------------~~~~~~d   67 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEV--------------DDPSLPN   67 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTT--------------SSCCCCC
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcC--------------CCCCCcC
Confidence            35778888888888888888888888888753 66788999999999999999999888              6788888


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCC-cHHHHH--
Q psy9384         668 NCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGR-TALRVN--  744 (978)
Q Consensus       668 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~-t~L~~a--  744 (978)
                      ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++ |++++..+..|. ||||+|  
T Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~  146 (239)
T 1ycs_B           68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEE  146 (239)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999987 999998887777 999988  


Q ss_pred             HhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhc
Q psy9384         745 MKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLL  824 (978)
Q Consensus       745 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g  824 (978)
                      +     ..++.+++++|+    +.|     ++++..+..+.++++                  +..+.++++  ++...|
T Consensus       147 ~-----~~g~~~~~~~Ll----~~~-----a~~~~~~~~~~~al~------------------d~~~~~~~e--La~~~G  192 (239)
T 1ycs_B          147 M-----EEGYTQCSQFLY----GVQ-----EKMGIMNKGVIYALW------------------DYEPQNDDE--LPMKEG  192 (239)
T ss_dssp             S-----STTCCCHHHHHH----HHH-----HHTTTTGGGEEEESS------------------CBCCSSTTB--CCBCSS
T ss_pred             h-----hhccHHHHHHHH----Hhh-----hcccccccceEEEEe------------------ccCCCCCCc--ccccCC
Confidence            5     778889999999    888     777766554444432                  456777888  777777


Q ss_pred             ccccccchhhhcccCCCc------ccccccccccccccc
Q psy9384         825 DVKHCTKRYLCSLNDGHL------IHAVDLSQRRQTSSS  857 (978)
Q Consensus       825 ~~~~~~~v~~Ll~~~g~~------~~~~~~~~~tpl~~a  857 (978)
                      .     +++.|... +.+      ....+..|.+|..+.
T Consensus       193 ~-----~i~vl~~~-~~~~~~Ww~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          193 D-----CMTIIHRE-DEDEIEWWWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             C-----EEEECCCC-TTSCSSEEEEEETTEEEEEEGGGE
T ss_pred             C-----EEEEEEec-CCCCCCEEEEEECCcEEEeehHHe
Confidence            5     55666655 443      234566788888764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=5e-23  Score=195.55  Aligned_cols=152  Identities=29%  Similarity=0.373  Sum_probs=133.5

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCH
Q psy9384         558 MTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNI  636 (978)
Q Consensus       558 ~t~L~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~  636 (978)
                      .++|+.|+..|+.+++++|++. +.+++..+..|.||||. +..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            4788999999999999998888 34788888888999998 888899999999999998888888899999999999999


Q ss_pred             HHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCH
Q psy9384         637 DVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY  716 (978)
Q Consensus       637 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  716 (978)
                      +++++|+++|              .+++.++..|.||||+|+..|+.+++++|+++ ++++..|..|.|||++|+..|+.
T Consensus        82 ~~v~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           82 DTLKVLVEHG--------------ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             HHHHHHHHTT--------------CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCH
T ss_pred             HHHHHHHHcC--------------CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcH
Confidence            9999999988              67788888889999999999999999999988 88888888899999999999999


Q ss_pred             HHHHHHHhh
Q psy9384         717 HLVEMFLEQ  725 (978)
Q Consensus       717 ~iv~~Ll~~  725 (978)
                      +++++|+++
T Consensus       147 ~~v~~Ll~~  155 (156)
T 1bd8_A          147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999988874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=3.3e-24  Score=219.47  Aligned_cols=175  Identities=22%  Similarity=0.202  Sum_probs=122.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy9384         341 SKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASW  420 (978)
Q Consensus       341 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~  420 (978)
                      ..|.||||.|+..++.+.++.|++  .|.+++.. ..+.||||.|+..|+.++|++|++.|++++..|..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~--~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIA--HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhc--cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            467899999999999999999998  77777753 677899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCC-cHHHHH--HHcC
Q psy9384         421 GGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGR-TALIAS--AYMG  497 (978)
Q Consensus       421 ~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~-t~L~~A--~~~~  497 (978)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..+. ||++.|  +..|
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g  150 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV---------CKFLVESGAAVFAMTYSDMQTAADKCEEMEEG  150 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCcceecCCCCcchHHHHHHhhhc
Confidence            999999999999999999999999999999999999988         9999999999998887777 999998  7788


Q ss_pred             CHHHHHHHHHcCCCCccC---------CCCCCChhhhhh
Q psy9384         498 HADIVSSILEYDADINQQ---------DNDGRTALSVSA  527 (978)
Q Consensus       498 ~~~~v~~Ll~~g~~~~~~---------~~~~~t~l~~a~  527 (978)
                      +.+++++|+++|++++..         +..+.++++++.
T Consensus       151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence            899999999988877665         334555555554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=2.9e-23  Score=191.59  Aligned_cols=134  Identities=31%  Similarity=0.441  Sum_probs=124.0

Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-CCc
Q psy9384         368 ALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG-GRT  446 (978)
Q Consensus       368 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-~~t  446 (978)
                      +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++..+.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            45778889999999999999999999999999999999999999999999999 9999999999999999999988 899


Q ss_pred             HHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       447 ~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      |||+|+..|+.++         +++|+++|++++..+..|.|||++|+..++.+++++|+++|++
T Consensus        81 ~L~~A~~~~~~~~---------v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDT---------LVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHH---------HHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHH---------HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999998         9999999999999999999999999999999999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=6.2e-23  Score=194.47  Aligned_cols=143  Identities=29%  Similarity=0.381  Sum_probs=111.1

Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc-HHHH
Q psy9384         372 ELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRT-ALRA  450 (978)
Q Consensus       372 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t-~l~~  450 (978)
                      ...+..|.||||+||..|+.++|++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345667889999999999999999999999888888888999999885 88899999999999998888888888 9999


Q ss_pred             HHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhh
Q psy9384         451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALS  524 (978)
Q Consensus       451 A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  524 (978)
                      |+..|+.++         +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++.++..|.++.+
T Consensus        85 A~~~~~~~~---------v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           85 AAREGFLDT---------LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHTCHHH---------HHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHCCCHHH---------HHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            999998888         99999999999888888999999999999999999999999998888888887765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.9e-23  Score=202.87  Aligned_cols=163  Identities=17%  Similarity=0.115  Sum_probs=140.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhccCCCccccC-CCCCcHHHHHHHhCCH----HHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy9384         343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVD-KHGQTALNVAAHQGFV----DAVQILLEAGANINHTDCEGWTPLRS  417 (978)
Q Consensus       343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~  417 (978)
                      +.++|+.|+..|+++.++.++.  .+  ++..+ ..|+||||+|+..|+.    +++++|+++|+++|.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~--~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFE--KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHH--HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHh--cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            3467999999999999999998  33  34445 7799999999999975    59999999999999999999999999


Q ss_pred             HHHcCC------HHHHHHHHhCCCCCCcCCCCCC-cHHHHHHhcCCceeeeeccchHHHHHHHH-cCCCCcccCCCCCcH
Q psy9384         418 ASWGGH------SAVVKLLLQSGADVNCSDMGGR-TALRAAAWGGHLEVTIVLGPLCVVKLLLA-AGAHVNAADSEGRTA  489 (978)
Q Consensus       418 A~~~g~------~~iv~~Ll~~g~~~~~~~~~~~-t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~-~g~~~~~~~~~~~t~  489 (978)
                      |+..|+      .+++++|+++|++++.+|..|. ||||+|+..+..+.    ...+++++|++ +|++++.+|..|.||
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~----~~~~iv~~Ll~~~gad~~~~d~~G~Tp  157 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN----EMIPLYKLIFSQSGLQLLIKDKWGLTA  157 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHH----HHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChh----hHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence            999987      6889999999999999999999 99999999654321    11223999999 999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc
Q psy9384         490 LIASAYMGHADIVSSILEYDADIN  513 (978)
Q Consensus       490 L~~A~~~~~~~~v~~Ll~~g~~~~  513 (978)
                      |++|+..|+.+++++|++...+.+
T Consensus       158 L~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999998654443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=2.2e-22  Score=190.64  Aligned_cols=145  Identities=21%  Similarity=0.253  Sum_probs=120.8

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc-HH
Q psy9384         337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWT-PL  415 (978)
Q Consensus       337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L  415 (978)
                      ...+..+.|+||+|+..|+.+++++|++  .+.+++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            3456788999999999999999999999  78999999999999999996 99999999999999999999999999 99


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384         416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS  493 (978)
Q Consensus       416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A  493 (978)
                      |+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..|.||.+.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV---------ARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHH---------HHHHSSCC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHH---------HHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999999999999999999999999999         9999999999999999999887643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.86  E-value=9.3e-22  Score=181.42  Aligned_cols=133  Identities=29%  Similarity=0.342  Sum_probs=99.5

Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCC
Q psy9384         580 EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG  659 (978)
Q Consensus       580 g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~  659 (978)
                      +++++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+++++|+++|             
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-------------   67 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG-------------   67 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-------------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-------------
Confidence            34566667777777777777777777777777777777777777777777777 7777777777777             


Q ss_pred             CCCccccCCC-CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCC
Q psy9384         660 SLDEQHRDNC-GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEA  728 (978)
Q Consensus       660 ~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~  728 (978)
                       .+++.++.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++ |+
T Consensus        68 -~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Ga  135 (136)
T 1d9s_A           68 -AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TG  135 (136)
T ss_dssp             -CCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HC
T ss_pred             -CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence             566667777 77777777777777777777777777777777777777777777777777777775 54

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.8e-21  Score=175.96  Aligned_cols=126  Identities=54%  Similarity=0.765  Sum_probs=106.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      +|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      .++         +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++
T Consensus        81 ~~~---------~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEV---------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHH---------HHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            887         8888888888888888888888888888888888888888764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=1.8e-21  Score=179.53  Aligned_cols=125  Identities=41%  Similarity=0.517  Sum_probs=92.1

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcC
Q psy9384         376 KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG  455 (978)
Q Consensus       376 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~  455 (978)
                      ..+.||||+||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384         456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD  509 (978)
Q Consensus       456 ~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  509 (978)
                      +.++         +++|+++|++++..+..|.|||++|+..|+.+++++|+++|
T Consensus        92 ~~~~---------v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEI---------AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHH---------HHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7776         77777777777777777777777777777777777777654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=7.5e-21  Score=175.29  Aligned_cols=126  Identities=29%  Similarity=0.459  Sum_probs=120.1

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy9384         340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSAS  419 (978)
Q Consensus       340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~  419 (978)
                      ...+.|+||+|+..|+.+++++|++  .+.+++..|..|.||||+||..|+.+++++|++.|++++..|..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            4456799999999999999999999  78999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcC
Q psy9384         420 WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAG  476 (978)
Q Consensus       420 ~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g  476 (978)
                      ..|+.+++++|+++|++++..+..|.|||++|+..|+.++         +++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~---------~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL---------AEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHH---------HHHHHHcC
Confidence            9999999999999999999999999999999999999999         99999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=1.6e-21  Score=189.19  Aligned_cols=169  Identities=15%  Similarity=0.160  Sum_probs=118.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSASWGGHS----AVVKLLLQSGADVNCSDMGGRTALRAAA  452 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g~~----~iv~~Ll~~g~~~~~~~~~~~t~l~~A~  452 (978)
                      ++++|+.|++.|+.+.++.+++.+.  +..+ ..|+||||+|+.+|+.    +++++|+++|++++.++..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            3566777777777777777776553  3344 5577777777777764    3677777777777777777777777776


Q ss_pred             hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCC-ChhhhhhhccC
Q psy9384         453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR-TALSVSALCVP  531 (978)
Q Consensus       453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-t~l~~a~~~~~  531 (978)
                      ..++.++         .+                           ..+++++|+++|++++.++..|. ||||+|+....
T Consensus        84 ~~~~~~~---------~~---------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~  127 (186)
T 3t8k_A           84 QGGGNDI---------TG---------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV  127 (186)
T ss_dssp             HHCTTCH---------HH---------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCS
T ss_pred             HcCCcch---------hh---------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCC
Confidence            6665543         11                           24678888888888888888888 88888874211


Q ss_pred             CCCChHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384         532 SSDGYAKVVSILLE-KGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD  584 (978)
Q Consensus       532 ~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~  584 (978)
                      ...+..+++++|++ .|++++.++..|.|||++|++.++.+++++|.+...+.+
T Consensus       128 ~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            12345678888888 888888888888888888888888888888876544333

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.9e-20  Score=170.41  Aligned_cols=126  Identities=48%  Similarity=0.716  Sum_probs=121.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      .|.|+||.|+..|+.+++++|++  .+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence            47899999999999999999999  7889999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH  478 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~  478 (978)
                      |+.+++++|+++|++++..+..|.||+++|+..++.++         +++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~---------~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV---------VKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHH---------HHHHHHcCCC
Confidence            99999999999999999999999999999999999999         9999999975

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=2.1e-21  Score=179.42  Aligned_cols=128  Identities=34%  Similarity=0.462  Sum_probs=96.4

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384         373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA  452 (978)
Q Consensus       373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~  452 (978)
                      .+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            56777788888888888888888888888777777777888888888888888888888877777777777777777777


Q ss_pred             hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384         453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD  509 (978)
Q Consensus       453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  509 (978)
                      ..|+.++         +++|+++|++++..+..|.||+++|+..+..+++++|.+.+
T Consensus        85 ~~~~~~~---------v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           85 KNGHVDI---------VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HTTCHHH---------HHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HcCCHHH---------HHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            7777777         77777777777777777777777777777777766665544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.82  E-value=4.6e-20  Score=170.40  Aligned_cols=129  Identities=30%  Similarity=0.400  Sum_probs=111.0

Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhC
Q psy9384         613 GAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEA  692 (978)
Q Consensus       613 g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  692 (978)
                      |+++ ..+..|.||||+|+..|+.+++++|++.|              .+++.++..|.||||+|+..|+.+++++|+++
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   65 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNG--------------SDPNVKDHAGWTPLHEACNHGHLKVVELLLQH   65 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTT--------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4566 66788889999999999999999999888              67778888899999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHH
Q psy9384         693 GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLL  762 (978)
Q Consensus       693 g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll  762 (978)
                      |++++..|..|.||||+|+..|+.+++++|++. |++++.+|..|.|||++|+     ..+..+++++|.
T Consensus        66 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~-----~~~~~~~l~~l~  129 (137)
T 3c5r_A           66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTD-----DESMKSLLLLPE  129 (137)
T ss_dssp             TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCC-----CHHHHHHHSCC-
T ss_pred             CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHh-----hccHHHHHhhcc
Confidence            999999888899999999999999999999986 9999999999999999998     888888888777

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=5.5e-20  Score=179.36  Aligned_cols=141  Identities=26%  Similarity=0.292  Sum_probs=130.2

Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHH
Q psy9384         339 FDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRS  417 (978)
Q Consensus       339 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~  417 (978)
                      .+..|.||||+|+..|+.+++++|++   +.+++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            35678899999999999999999997   77889999999999999999999999999999999999998 889999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q psy9384         418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG  497 (978)
Q Consensus       418 A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~  497 (978)
                      |+..|+.+++++|+++|++++..+..|.|||++|+..++.+.                          +.++|++|+..|
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~--------------------------~~~~l~~a~~~~  170 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP--------------------------KGNPMQFGRRIG  170 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC--------------------------CCSHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc--------------------------cccHHHHHHHcC
Confidence            999999999999999999999999999999999987655433                          578999999999


Q ss_pred             CHHHHHHHHHc
Q psy9384         498 HADIVSSILEY  508 (978)
Q Consensus       498 ~~~~v~~Ll~~  508 (978)
                      +.+++++|.++
T Consensus       171 ~~~i~~~L~~~  181 (183)
T 3deo_A          171 LEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.80  E-value=1.4e-19  Score=185.36  Aligned_cols=143  Identities=26%  Similarity=0.289  Sum_probs=131.3

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH
Q psy9384         340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSA  418 (978)
Q Consensus       340 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A  418 (978)
                      +..|.||||+|+..|+.+++++|++   +.+++..|..|.||||+||..|+.++|++|+++|++++..+ ..|+||||+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            4577899999999999999999997   67899999999999999999999999999999999999998 7899999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q psy9384         419 SWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH  498 (978)
Q Consensus       419 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~  498 (978)
                      +..|+.+++++|+++|++++..+..|.||||+|+..++.                          ..+.+||++|+..|+
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~--------------------------~~~~~~l~~a~~~g~  172 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------------------------TPKGNPMQFGRRIGL  172 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT--------------------------CCCSSHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc--------------------------cCCCCHHHHHHHcCh
Confidence            999999999999999999999999999999999864332                          347899999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy9384         499 ADIVSSILEYDAD  511 (978)
Q Consensus       499 ~~~v~~Ll~~g~~  511 (978)
                      .+++++|++++.+
T Consensus       173 ~~iv~~L~~~~~~  185 (244)
T 3ui2_A          173 EKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHEE
T ss_pred             HHHHHHHHHhccc
Confidence            9999999987543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.80  E-value=6.2e-20  Score=165.82  Aligned_cols=108  Identities=32%  Similarity=0.434  Sum_probs=58.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      .|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~   85 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   85 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHH
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS  493 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A  493 (978)
                      .++         +++|+++|++++..+..|.||+++|
T Consensus        86 ~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           86 VSC---------VKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHH---------HHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHH---------HHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            555         5555555555555555555555555

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=7e-20  Score=178.61  Aligned_cols=139  Identities=29%  Similarity=0.312  Sum_probs=116.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHh
Q psy9384         375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAW  453 (978)
Q Consensus       375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~  453 (978)
                      +..|.||||+||..|+.+++++|++ |++++..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4577899999999999999999999 99999999999999999999999999999999999999888 789999999999


Q ss_pred             cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCC
Q psy9384         454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS  533 (978)
Q Consensus       454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  533 (978)
                      .|+.++         +++|+++|++++.++..|.|||++|+..++.                 ..+.+++++++     .
T Consensus       120 ~~~~~~---------v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~-----~  168 (183)
T 3deo_A          120 YVRPEV---------VEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGR-----R  168 (183)
T ss_dssp             TTCHHH---------HHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHH-----H
T ss_pred             cCcHHH---------HHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHH-----H
Confidence            999988         9999999999999999999999999874322                 12345666665     4


Q ss_pred             CChHHHHHHHHh
Q psy9384         534 DGYAKVVSILLE  545 (978)
Q Consensus       534 ~~~~~~v~~Ll~  545 (978)
                      .+..+++++|.+
T Consensus       169 ~~~~~i~~~L~~  180 (183)
T 3deo_A          169 IGLEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHH
Confidence            556666666654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=4.3e-20  Score=186.80  Aligned_cols=135  Identities=28%  Similarity=0.361  Sum_probs=107.2

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHH
Q psy9384         374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS-GADVNCSDMGGRTALRAAA  452 (978)
Q Consensus       374 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~A~  452 (978)
                      .+..|.||||+||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            355678899999999999999999999988888888899999999999999999999988 8888888888889999999


Q ss_pred             hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCC
Q psy9384         453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDN  517 (978)
Q Consensus       453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  517 (978)
                      ..|+.++         +++|+++|++++..+..|.|||++|+..++.++++.|++.|+.....+.
T Consensus       149 ~~~~~~~---------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          149 WKGYADI---------VQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HHTCHHH---------HHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             HcCCHHH---------HHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            9888888         8999998998888888889999999988888999888888877655443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.79  E-value=1.7e-19  Score=189.99  Aligned_cols=139  Identities=20%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhccCCCccc------cCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384         344 QSVLHKLCAENNINLLKTFLKSCEALDLEL------VDKHGQTALNVAAHQ---GFVDAVQILLEAGANINHTDCEGWTP  414 (978)
Q Consensus       344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~------~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~  414 (978)
                      .++|+.|+..|+++.++.|++  .+.+++.      .+..|.||||+||..   |+.+++++|+++|++++..|..|+||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             HHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            467888888888888888887  7777776      577888888888887   78888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q psy9384         415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASA  494 (978)
Q Consensus       415 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~  494 (978)
                      ||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.++         +++|+++|++      .+.||||+|+
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~i---------v~~Ll~~ga~------~g~tpLh~A~  294 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC---------EELLEQAQAG------TFAFPLHVDY  294 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHH---------HHHHHHHHHH------TTSSCCC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH---------HHHHHHhcCC------CCCChhHHHH
Confidence            888888888888888888888888888888888888888888888         8888887765      3678888888


Q ss_pred             HcCCH
Q psy9384         495 YMGHA  499 (978)
Q Consensus       495 ~~~~~  499 (978)
                      ..|+.
T Consensus       295 ~~g~~  299 (301)
T 2b0o_E          295 SWVIS  299 (301)
T ss_dssp             -----
T ss_pred             hcCCc
Confidence            77653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=6e-19  Score=185.81  Aligned_cols=136  Identities=21%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINH------TDCEGWTPLRSASWG---GHSAVVKLLLQSGADVNCSDMGGRTA  447 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~  447 (978)
                      ...++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++..+..|.||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            345789999999999999999999999988      688999999999997   89999999999999999999999999


Q ss_pred             HHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhh
Q psy9384         448 LRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSA  527 (978)
Q Consensus       448 l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  527 (978)
                      ||+|+..|+.++         +++|+++|++++..|..|.|||++|+..|+.+++++|+++|++      .+.|||++|+
T Consensus       230 Lh~A~~~g~~~~---------v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~  294 (301)
T 2b0o_E          230 LHYAALYNQPDC---------LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDY  294 (301)
T ss_dssp             HHHHHHTTCHHH---------HHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC---
T ss_pred             HHHHHHcCCHHH---------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHH
Confidence            999999999999         9999999999999999999999999999999999999999876      4789999998

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.78  E-value=7.5e-19  Score=158.63  Aligned_cols=119  Identities=29%  Similarity=0.374  Sum_probs=110.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q psy9384         620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV  699 (978)
Q Consensus       620 ~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  699 (978)
                      +..+.||||.|+..|+.+++++|++.|              .+++.++..|.||||+|+..++.+++++|+++|++++..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   69 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG--------------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP   69 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT--------------CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC--------------CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence            456789999999999999999999999              788889999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHH
Q psy9384         700 DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLI  758 (978)
Q Consensus       700 d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~  758 (978)
                      |..|.||||+|+..|+.+++++|+++ |++++.+|..|.|||++|.     ..+..+++
T Consensus        70 d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~-----~~~~~~ll  122 (123)
T 3aaa_C           70 DKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATD-----NQAIKALL  122 (123)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCC-----CHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhC-----CHHHHHHh
Confidence            99999999999999999999999997 9999999999999999998     66666654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.78  E-value=2.7e-19  Score=183.11  Aligned_cols=111  Identities=33%  Similarity=0.338  Sum_probs=99.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHh
Q psy9384         375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSD-MGGRTALRAAAW  453 (978)
Q Consensus       375 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~A~~  453 (978)
                      +..|.||||+||..|+.++|++|++ |++++..|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3467899999999999999999999 89999999999999999999999999999999999998887 778899999999


Q ss_pred             cCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q psy9384         454 GGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAY  495 (978)
Q Consensus       454 ~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~  495 (978)
                      .|+.++         +++|+++|++++..+..|.|||++|+.
T Consensus       121 ~g~~~~---------v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          121 YVRPEV---------VEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             TTCHHH---------HHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCHHH---------HHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            999888         999999999998888889999998885

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=1.5e-19  Score=182.85  Aligned_cols=138  Identities=25%  Similarity=0.367  Sum_probs=118.0

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Q psy9384         337 TMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPL  415 (978)
Q Consensus       337 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L  415 (978)
                      +..+..|.|+||+|+..|+.+++++|++  .+.+++..|..|.||||+||..|+.++|++|++. |++++..|..|.|||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             cccccccccccccccccCcHHHHHHHHh--CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            4456678899999999999999999999  8899999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCC
Q psy9384         416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE  485 (978)
Q Consensus       416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~  485 (978)
                      |+|+..|+.+++++|+++|++++..+..|.|||++|+..++.++         ++.|++.|+..+..+..
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~---------l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL---------LKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHH---------HC---------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHH---------HHHHhccchhhhccchh
Confidence            99999999999999999999999999999999999999999998         99999999877655543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.76  E-value=3.8e-18  Score=145.02  Aligned_cols=93  Identities=57%  Similarity=0.828  Sum_probs=69.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      +|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ceeeeeccchHHHHHHHHcCCC
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAH  478 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~  478 (978)
                      .++         +++|+++|++
T Consensus        81 ~~~---------~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEV---------VKLLLEAGAY   93 (93)
T ss_dssp             HHH---------HHHHHHTTCC
T ss_pred             HHH---------HHHHHHcCCC
Confidence            777         7777777753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=4e-18  Score=183.17  Aligned_cols=126  Identities=32%  Similarity=0.369  Sum_probs=103.3

Q ss_pred             CCCCCcHHHHHHHh-CCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384         375 DKHGQTALNVAAHQ-GFVDAVQILLEAGANINHTD--CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAA  451 (978)
Q Consensus       375 ~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A  451 (978)
                      ...+.|+||.|+.. |+.+++++|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34456788888888 88888888888888888777  7788888888888888888888888888888888888888888


Q ss_pred             HhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy9384         452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD  509 (978)
Q Consensus       452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  509 (978)
                      +..|+.++         +++|+++|++++..+..|.|||++|+..++.+++++|++.+
T Consensus       276 ~~~g~~~~---------v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          276 TILGHTGL---------ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCcHHH---------HHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88888887         88888888888888888888888888888888888888765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=7.4e-18  Score=181.12  Aligned_cols=145  Identities=26%  Similarity=0.334  Sum_probs=120.0

Q ss_pred             cCCCchHHHHHHHc-CCHHHHHHHHHhccCCCccccC--CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9384         340 DSKNQSVLHKLCAE-NNINLLKTFLKSCEALDLELVD--KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLR  416 (978)
Q Consensus       340 ~~~~~~~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~  416 (978)
                      ...+.++||.|+.. |++++++.|++  .+.+++..+  ..|.||||+||..|+.++|++|+++|++++..|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~--~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHH--TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHH--cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            33456899999999 99999999999  899999888  89999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC---CcccCCCCCcHHHHH
Q psy9384         417 SASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH---VNAADSEGRTALIAS  493 (978)
Q Consensus       417 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~---~~~~~~~~~t~L~~A  493 (978)
                      +|+..|+.+++++|+++|++++..+..|.||||+|+..++.++         +++|+..+..   ....+..+.|++..+
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~i---------v~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI---------VTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHHC-------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHH---------HHHHHHcCCCcccccccCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999         9999987633   223344455666554


Q ss_pred             HH
Q psy9384         494 AY  495 (978)
Q Consensus       494 ~~  495 (978)
                      ..
T Consensus       345 ~~  346 (368)
T 3jue_A          345 RD  346 (368)
T ss_dssp             --
T ss_pred             HH
Confidence            43

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.73  E-value=2.5e-17  Score=139.93  Aligned_cols=93  Identities=40%  Similarity=0.643  Sum_probs=88.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      .|.||||+|+..|+.+++++|++  .+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            37899999999999999999999  8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCC
Q psy9384         422 GHSAVVKLLLQSGAD  436 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~  436 (978)
                      |+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999974

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.73  E-value=2.5e-17  Score=171.38  Aligned_cols=125  Identities=22%  Similarity=0.242  Sum_probs=117.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHHhccCCC------ccccCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384         344 QSVLHKLCAENNINLLKTFLKSCEALD------LELVDKHGQTALNVAAHQ---GFVDAVQILLEAGANINHTDCEGWTP  414 (978)
Q Consensus       344 ~~~l~~a~~~~~~~~v~~ll~~~~~~~------~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~  414 (978)
                      .++|+.|+..|+.+.++.+++  .+.+      ++..+..|.||||+||..   |+.+++++|+++|++++.+|..|+||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~--~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHH--hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence            478999999999999999999  6666      445588999999999999   99999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCC
Q psy9384         415 LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHV  479 (978)
Q Consensus       415 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~  479 (978)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++.
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~---------v~~Ll~~ga~~  264 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC---------EELLTQALSGR  264 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHH---------HHHHHHcCCCC
Confidence            999999999999999999999999999999999999999999999         99999998753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.72  E-value=3.4e-17  Score=170.38  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=117.2

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy9384         379 QTALNVAAHQGFVDAVQILLEAGANIN------HTDCEGWTPLRSASWG---GHSAVVKLLLQSGADVNCSDMGGRTALR  449 (978)
Q Consensus       379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~l~  449 (978)
                      .++|+.|+..|+.+.++.+++.|++++      ..+..|.||||+|+..   |+.+++++|+++|++++..+..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            457999999999999999999999844      4478899999999999   8999999999999999999999999999


Q ss_pred             HHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      +|+..|+.++         +++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus       211 ~A~~~g~~~~---------v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          211 YCCLTDNAEC---------LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHH---------HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999         9999999999999999999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=6.9e-18  Score=150.21  Aligned_cols=108  Identities=43%  Similarity=0.549  Sum_probs=90.1

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384         373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA  452 (978)
Q Consensus       373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~  452 (978)
                      .+|..|.||||+||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            45778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcH
Q psy9384         453 WGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA  489 (978)
Q Consensus       453 ~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~  489 (978)
                      ..++.++         +++|+++|++++..+..+.+|
T Consensus        84 ~~~~~~~---------~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEI---------VKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHH---------HHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHH---------HHHHHHcCCCCCcCCcccccc
Confidence            8888888         888888888888887777765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.68  E-value=4e-17  Score=145.26  Aligned_cols=109  Identities=31%  Similarity=0.455  Sum_probs=102.0

Q ss_pred             cccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy9384         338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRS  417 (978)
Q Consensus       338 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~  417 (978)
                      ..|..|.|+||+|+..|+.+++++|++  .+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            357889999999999999999999999  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy9384         418 ASWGGHSAVVKLLLQSGADVNCSDMGGRTAL  448 (978)
Q Consensus       418 A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l  448 (978)
                      |+..|+.+++++|+++|++++..+..+.+|-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999988888763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.59  E-value=3e-15  Score=131.46  Aligned_cols=87  Identities=38%  Similarity=0.481  Sum_probs=54.1

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy9384         373 LVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA  452 (978)
Q Consensus       373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~  452 (978)
                      ..+.+|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hcCCcee
Q psy9384         453 WGGHLEV  459 (978)
Q Consensus       453 ~~~~~~i  459 (978)
                      ..|+.++
T Consensus        99 ~~~~~~~  105 (110)
T 2zgd_A           99 DNGNEDL  105 (110)
T ss_dssp             HHTCHHH
T ss_pred             HcCCHHH
Confidence            6666665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.55  E-value=1.6e-14  Score=126.68  Aligned_cols=94  Identities=26%  Similarity=0.369  Sum_probs=85.7

Q ss_pred             ccccccCCCchHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9384         335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTP  414 (978)
Q Consensus       335 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  414 (978)
                      ...-.+..|.|+||+|+..|+.+++++|++  .+.+++..|..|.||||+||..|+.+++++|+++|++++.+|..|.||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            344567789999999999999999999999  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q psy9384         415 LRSASWGGHSAVVKLL  430 (978)
Q Consensus       415 L~~A~~~g~~~iv~~L  430 (978)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.75  E-value=9.6e-08  Score=95.97  Aligned_cols=192  Identities=16%  Similarity=0.136  Sum_probs=112.3

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.||+-..+.+.+|+...      ..+.++|+|+||+|||+++..+...+...         .....|+..+...  .
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~---------~~~~~~~~~~~~~--~   79 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGE---------NWRDNFIEMNASD--E   79 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGG---------GGGGGEEEEETTC--T
T ss_pred             HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhcc---------ccccceEEecccc--c
Confidence            56889999999999999864      23348999999999999999998554210         1112222222111  1


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      ... ..++..+.++...                                           .......+.++|||-+|...
T Consensus        80 ~~~-~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~vliiDe~~~l~  115 (226)
T 2chg_A           80 RGI-DVVRHKIKEFART-------------------------------------------APIGGAPFKIIFLDEADALT  115 (226)
T ss_dssp             TCH-HHHHHHHHHHHTS-------------------------------------------CCSTTCSCEEEEEETGGGSC
T ss_pred             cCh-HHHHHHHHHHhcc-------------------------------------------cCCCccCceEEEEeChhhcC
Confidence            111 1112222111111                                           00112456899999998876


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      ..        ....|.+++...    +.++.+++++++.........+.+..+.+...+    .+++..++...+...  
T Consensus       116 ~~--------~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~----~~~~~~~l~~~~~~~--  177 (226)
T 2chg_A          116 AD--------AQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP----KEAMKKRLLEICEKE--  177 (226)
T ss_dssp             HH--------HHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHH--
T ss_pred             HH--------HHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHHhCceeecCCCC----HHHHHHHHHHHHHHc--
Confidence            32        133455555532    346678888776543222233344456665444    477888887766421  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          .....++..+.+.+.+.|++..+.-.++.+.
T Consensus       178 ----~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~  208 (226)
T 2chg_A          178 ----GVKITEDGLEALIYISGGDFRKAINALQGAA  208 (226)
T ss_dssp             ----TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                1223456778888999999988877777664

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.74  E-value=3.4e-08  Score=101.08  Aligned_cols=209  Identities=13%  Similarity=0.104  Sum_probs=115.9

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.||+..++.+.+|+....     ..+.++|+|+||+|||+|+..+...+..          ...+....|.    . 
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~----------~~~~~~~~~~----~-   82 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNC----------ETGITATPCG----V-   82 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHC----------TTCSCSSCCS----C-
T ss_pred             HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcC----------CCCCCCCCCc----c-
Confidence            568999999999999998642     3458999999999999999999854321          0001000111    0 


Q ss_pred             cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                        ...     +.++... .+.+       ..... ..        ......+..++.. +.......++.++|||-+|..
T Consensus        83 --~~~-----~~~~~~~~~~~~-------~~~~~-~~--------~~~~~~~~~~~~~-~~~~~~~~~~~vlviDe~~~l  138 (250)
T 1njg_A           83 --CDN-----CREIEQGRFVDL-------IEIDA-AS--------RTKVEDTRDLLDN-VQYAPARGRFKVYLIDEVHML  138 (250)
T ss_dssp             --SHH-----HHHHHTTCCSSE-------EEEET-TC--------GGGHHHHHHHHHS-CCCSCSSSSSEEEEEETGGGS
T ss_pred             --cHH-----HHHHhccCCcce-------EEecC-cc--------cccHHHHHHHHHH-hhhchhcCCceEEEEECcccc
Confidence              000     1111111 1110       00000 00        0001223333332 112222345689999999987


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      +..        ....|.+++.    ..+.++.+|+++++.........+....+.+...+    .+|+..++..++... 
T Consensus       139 ~~~--------~~~~l~~~l~----~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~----~~e~~~~l~~~~~~~-  201 (250)
T 1njg_A          139 SRH--------SFNALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD----VEQIRHQLEHILNEE-  201 (250)
T ss_dssp             CHH--------HHHHHHHHHH----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHT-
T ss_pred             cHH--------HHHHHHHHHh----cCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCC----HHHHHHHHHHHHHhc-
Confidence            532        1233444443    23456788888876543222233334556665443    378888888776521 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                           .....++..+.+.+.++|++..+...++.+.
T Consensus       202 -----~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~  232 (250)
T 1njg_A          202 -----HIAHEPRALQLLARAAEGSLRDALSLTDQAI  232 (250)
T ss_dssp             -----TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 1223456778899999999999888877654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.64  E-value=5e-07  Score=99.31  Aligned_cols=225  Identities=12%  Similarity=0.088  Sum_probs=125.4

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.||+-.++++.+|+..--  ..+..+.++|+|+||+|||+++..+...+....     ........+++.+  -...
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-----~~~~~~~~~~~i~--~~~~   89 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARA-----SSLGVLVKPIYVN--ARHR   89 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-----HHHTCCEEEEEEE--TTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-----hccCCCeEEEEEE--CCcC
Confidence            679999999999999986421  123556899999999999999999985542100     0001133344433  2344


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .++..++..++.+|....|..         .             .+. ..+.+.+...+..   ...+.++|||-+|...
T Consensus        90 ~~~~~~~~~l~~~l~~~~~~~---------~-------------~~~-~~~~~~l~~~l~~---~~~~~vlilDEi~~l~  143 (387)
T 2v1u_A           90 ETPYRVASAIAEAVGVRVPFT---------G-------------LSV-GEVYERLVKRLSR---LRGIYIIVLDEIDFLP  143 (387)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSS---------C-------------CCH-HHHHHHHHHHHTT---SCSEEEEEEETTTHHH
T ss_pred             CCHHHHHHHHHHHhCCCCCCC---------C-------------CCH-HHHHHHHHHHHhc---cCCeEEEEEccHhhhc
Confidence            577888999999885432210         0             001 1111222222222   3457899999999986


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCC-CCceeeeeeecccc--cchhhc-ccCc--cccccccccchhhhhHHHHHHHHH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLF-PPWLFLFCTVRRQS--KSIKKM-FLGF--HKLSLDDLRKSHVIRDMQQYILLR  243 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~sr~~~--~~i~~~-~~~~--~~i~l~~~~~~~~~~Di~~yi~~~  243 (978)
                      ...      ...+.+..++....... +.++.+|+++++..  ..+... .+.+  ..+.+...+    .+|+..++..+
T Consensus       144 ~~~------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~----~~~~~~il~~~  213 (387)
T 2v1u_A          144 KRP------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYT----APQLRDILETR  213 (387)
T ss_dssp             HST------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCC----HHHHHHHHHHH
T ss_pred             ccC------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCC----HHHHHHHHHHH
Confidence            320      01234555555332111 44667777776652  112211 2222  346665444    47888888877


Q ss_pred             hcCchHHHhhcCcChHHHHHHHHhhch---hhHHHHHHHHhhh
Q psy9384         244 LASEESLRVHMNRDTAEMLNQLHIKSN---GCFLYLERVLDGI  283 (978)
Q Consensus       244 l~~~~~~~~~~~~~~~~i~~~l~~~a~---g~flw~~~~~~~l  283 (978)
                      +....    ......++..+.+.+.+.   |.+..+.-.++..
T Consensus       214 ~~~~~----~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a  252 (387)
T 2v1u_A          214 AEEAF----NPGVLDPDVVPLCAALAAREHGDARRALDLLRVA  252 (387)
T ss_dssp             HHHHB----CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHhhc----cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            75210    011223345677777777   9887666555554

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.64  E-value=2.4e-07  Score=100.30  Aligned_cols=233  Identities=12%  Similarity=0.046  Sum_probs=128.4

Q ss_pred             CCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecc
Q psy9384           3 TETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFC   82 (978)
Q Consensus         3 ~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~   82 (978)
                      ...+.....|+||+-.++++.+|+..       + +++.|+|++|+|||+|+..+.+..            +  +.|+-|
T Consensus         5 ~~~~~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------------~--~~~~~~   62 (350)
T 2qen_A            5 LRPKTRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------------P--GILIDC   62 (350)
T ss_dssp             CSCCCSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------------S--EEEEEH
T ss_pred             CCCCCChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------------C--cEEEEe
Confidence            34455667899999999999999984       2 689999999999999999997331            1  333333


Q ss_pred             ccCC--CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhc-chhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEE
Q psy9384          83 QSYD--LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVE-DESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYF  159 (978)
Q Consensus        83 ~~~~--~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  159 (978)
                      ....  ....+...+++.+..+|...     +.+.+... ....... ......... ..+.+.+......    ..+++
T Consensus        63 ~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~~----~~~~v  131 (350)
T 2qen_A           63 RELYAERGHITREELIKELQSTISPF-----QKFQSKFKISLNLKFL-TLEPRKLSL-REVFRELNDLGEE----LGEFI  131 (350)
T ss_dssp             HHHHHTTTCBCHHHHHHHHHHHSCSH-----HHHHHHHTCCCCCGGG-TSCGGGCCH-HHHHHHHHHHHHH----HSCEE
T ss_pred             ecccccccCCCHHHHHHHHHHHHHHH-----HhHhhhceeEEEecce-eeccccchH-HHHHHHHHHHHhc----cCCEE
Confidence            3111  12235666777766655421     11111100 0000000 000000111 2233333332221    13799


Q ss_pred             EEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc--cch------hhccc-C-ccccccccccc
Q psy9384         160 ILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS--KSI------KKMFL-G-FHKLSLDDLRK  229 (978)
Q Consensus       160 iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~--~~i------~~~~~-~-~~~i~l~~~~~  229 (978)
                      ||||-++.++... +....++...|..+....     .++.+++++++..  ..+      ...+. . ...+.+...+.
T Consensus       132 lvlDe~~~~~~~~-~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~  205 (350)
T 2qen_A          132 VAFDEAQYLRFYG-SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDK  205 (350)
T ss_dssp             EEEETGGGGGGBT-TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCH
T ss_pred             EEEeCHHHHhccC-ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCH
Confidence            9999999987410 000223455565555432     2578888877642  111      11111 1 12466654443


Q ss_pred             hhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         230 SHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       230 ~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          +++..++...+...      ......+....+.+.++|+++++...+..+.
T Consensus       206 ----~e~~~~l~~~~~~~------~~~~~~~~~~~i~~~tgG~P~~l~~~~~~~~  250 (350)
T 2qen_A          206 ----DTSVEFLKRGFREV------NLDVPENEIEEAVELLDGIPGWLVVFGVEYL  250 (350)
T ss_dssp             ----HHHHHHHHHHHHTT------TCCCCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHc------CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence                77888887655421      1123345678899999999999998877653

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.55  E-value=9.6e-07  Score=101.10  Aligned_cols=207  Identities=13%  Similarity=0.142  Sum_probs=122.0

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc---CCCCCchhhhhhhhccceeeeccccCCCC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF---PSAESSFSQQHNLRKKLLAYHFCQSYDLA   88 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~---~l~~~~~~~~~~~~~~~~~~ff~~~~~~~   88 (978)
                      | ||+--++++.+||...   .....+++.|+|.+|.|||+|+..+..   +-...        .-..++| .+-+....
T Consensus       131 ~-GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~--------~F~~~~w-v~vs~~~~  197 (549)
T 2a5y_B          131 Y-IREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI--------NYDSIVW-LKDSGTAP  197 (549)
T ss_dssp             C-CCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT--------TBSEEEE-EECCCCST
T ss_pred             C-CchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc--------cCCcEEE-EEECCCCC
Confidence            6 9999999999999764   123468999999999999999999994   21110        0122333 32222222


Q ss_pred             ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                       .++..+++.++.||.......      ....  ..         ....+.+...+.+.+..    .+++.||+|.++..
T Consensus       198 -~~~~~~~~~il~~l~~~~~~~------~~~~--~~---------~~~~~~l~~~l~~~L~~----~kr~LlVLDdv~~~  255 (549)
T 2a5y_B          198 -KSTFDLFTDILLMLKSEDDLL------NFPS--VE---------HVTSVVLKRMICNALID----RPNTLFVFDDVVQE  255 (549)
T ss_dssp             -THHHHHHHHHHHHHTTTSCCT------TCCC--CT---------TCCHHHHHHHHHHHHTT----STTEEEEEEEECCH
T ss_pred             -CCHHHHHHHHHHHHhcCcccc------cccc--cc---------cccHHHHHHHHHHHHcC----CCcEEEEEECCCCc
Confidence             468899999999997642100      0000  00         00012233333333322    23899999999885


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhccc-CccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFL-GFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~-~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                      +.             + .+...      ++.++|+|||...  +..... ....+.+...+.    +|-..++..+....
T Consensus       256 ~~-------------~-~~~~~------~gs~ilvTTR~~~--v~~~~~~~~~~~~l~~L~~----~ea~~Lf~~~a~~~  309 (549)
T 2a5y_B          256 ET-------------I-RWAQE------LRLRCLVTTRDVE--ISNAASQTCEFIEVTSLEI----DECYDFLEAYGMPM  309 (549)
T ss_dssp             HH-------------H-HHHHH------TTCEEEEEESBGG--GGGGCCSCEEEEECCCCCH----HHHHHHHHHTSCCC
T ss_pred             hh-------------h-ccccc------CCCEEEEEcCCHH--HHHHcCCCCeEEECCCCCH----HHHHHHHHHHhcCC
Confidence            41             1 22211      2448899988754  333332 223466665443    45555555443211


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      .     ......++..+|+++.+|.+|-++++...+.
T Consensus       310 ~-----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~  341 (549)
T 2a5y_B          310 P-----VGEKEEDVLNKTIELSSGNPATLMMFFKSCE  341 (549)
T ss_dssp             C-------CHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             C-----CchhHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence            1     1133456889999999999999998876664

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.52  E-value=4.4e-07  Score=100.65  Aligned_cols=229  Identities=13%  Similarity=0.027  Sum_probs=124.7

Q ss_pred             CcccccccchHHHHHHH-hcCCCCCCCCCceEEE--EcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384          10 KKFFCREWAFVKLVHCL-ESKTNSKPGNNGGALI--IGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD   86 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl-~~~~~~~~~~~~~l~l--~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~   86 (978)
                      ..|+||+--++++.+|+ ..-........+.++|  +|+||+|||+|+..+.+.+.....   .......+.|+-|..  
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--   96 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA---KEGLTVKQAYVNAFN--   96 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH---HTTCCEEEEEEEGGG--
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh---ccCCceeEEEEECCC--
Confidence            67999999888888887 4210000014568899  999999999999999855321000   000123344554432  


Q ss_pred             CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384          87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID  166 (978)
Q Consensus        87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD  166 (978)
                        ..++..+++.++.+|....|..             .         .+. ..+.+.+...+..   ...+++||||-+|
T Consensus        97 --~~~~~~~~~~l~~~l~~~~~~~-------------~---------~~~-~~~~~~l~~~l~~---~~~~~llvlDe~~  148 (412)
T 1w5s_A           97 --APNLYTILSLIVRQTGYPIQVR-------------G---------APA-LDILKALVDNLYV---ENHYLLVILDEFQ  148 (412)
T ss_dssp             --CCSHHHHHHHHHHHHTCCCCCT-------------T---------CCH-HHHHHHHHHHHHH---HTCEEEEEEESTH
T ss_pred             --CCCHHHHHHHHHHHhCCCCCCC-------------C---------CCH-HHHHHHHHHHHHh---cCCeEEEEEeCHH
Confidence              2477888999998885432210             0         000 1111222222221   2457899999999


Q ss_pred             cccccCCCcCCCcchhhHHHHHHhccC-CCCCceeeeeeecccc---------cchhhcccCccccccccccchhhhhHH
Q psy9384         167 ETHVTNKKIYSDKATCSIADLLARNHH-LFPPWLFLFCTVRRQS---------KSIKKMFLGFHKLSLDDLRKSHVIRDM  236 (978)
Q Consensus       167 E~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~sr~~~---------~~i~~~~~~~~~i~l~~~~~~~~~~Di  236 (978)
                      ......+  ...+.+..+.+++..... .....+.+|++++...         +.+...+.  ..+.+...+.    +++
T Consensus       149 ~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~--~~i~l~~l~~----~e~  220 (412)
T 1w5s_A          149 SMLSSPR--IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG--FKLHLPAYKS----REL  220 (412)
T ss_dssp             HHHSCTT--SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS--EEEECCCCCH----HHH
T ss_pred             HHhhccC--cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC--CeeeeCCCCH----HHH
Confidence            9863200  011223333333332210 0014677887776432         11112221  2266654443    688


Q ss_pred             HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhch------hhHHHHHHHHhhh
Q psy9384         237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSN------GCFLYLERVLDGI  283 (978)
Q Consensus       237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~------g~flw~~~~~~~l  283 (978)
                      ..++..++....    .......+..+.+.+.+.      |.+.++...++..
T Consensus       221 ~~ll~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a  269 (412)
T 1w5s_A          221 YTILEQRAELGL----RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMA  269 (412)
T ss_dssp             HHHHHHHHHHHB----CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC----CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence            888887765211    111234567788888888      9999888777654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.43  E-value=1.1e-06  Score=93.91  Aligned_cols=193  Identities=13%  Similarity=0.109  Sum_probs=110.5

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.||+-..+.+.+|+...+     .+. ++|+|+||+|||+++..+...+...         .....+++.+..+  .
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~-----~~~-~ll~G~~G~GKt~la~~l~~~l~~~---------~~~~~~~~~~~~~--~   83 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGN-----MPH-MIISGMPGIGKTTSVHCLAHELLGR---------SYADGVLELNASD--D   83 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCC-----CCC-EEEECSTTSSHHHHHHHHHHHHHGG---------GHHHHEEEECTTS--C
T ss_pred             HHHHCCHHHHHHHHHHHHcCC-----CCe-EEEECcCCCCHHHHHHHHHHHhcCC---------cccCCEEEecCcc--c
Confidence            568899999999999998631     223 8999999999999999998554211         1111122222111  1


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .. ...++.++.++....                                          ......++.++|||-+|...
T Consensus        84 ~~-~~~i~~~~~~~~~~~------------------------------------------~~~~~~~~~viiiDe~~~l~  120 (323)
T 1sxj_B           84 RG-IDVVRNQIKHFAQKK------------------------------------------LHLPPGKHKIVILDEADSMT  120 (323)
T ss_dssp             CS-HHHHHTHHHHHHHBC------------------------------------------CCCCTTCCEEEEEESGGGSC
T ss_pred             cC-hHHHHHHHHHHHhcc------------------------------------------ccCCCCCceEEEEECcccCC
Confidence            11 122222222222100                                          00001236789999988875


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      ...        ...|.+++..    .+.++.+++++++.........+.+..+.+...+    .+++..++..++...  
T Consensus       121 ~~~--------~~~L~~~le~----~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~----~~~~~~~l~~~~~~~--  182 (323)
T 1sxj_B          121 AGA--------QQALRRTMEL----YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS----DEDVLKRLLQIIKLE--  182 (323)
T ss_dssp             HHH--------HHTTHHHHHH----TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHH--
T ss_pred             HHH--------HHHHHHHHhc----cCCCceEEEEeCChhhchhHHHhhceEEeecCCC----HHHHHHHHHHHHHHc--
Confidence            321        2234444443    2346677777766443222333344556665443    378888888766421  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          .....++..+.+++.++|....+.-.++.+.
T Consensus       183 ----~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~  213 (323)
T 1sxj_B          183 ----DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV  213 (323)
T ss_dssp             ----TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                1123356678889999999887776666554

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.43  E-value=2.9e-06  Score=91.94  Aligned_cols=230  Identities=13%  Similarity=0.092  Sum_probs=121.9

Q ss_pred             CCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecccc
Q psy9384           5 TPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS   84 (978)
Q Consensus         5 ~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~   84 (978)
                      .+.....|+||+-.++.+.+ +..         ++++|+|++|+|||+|+..+.+.+.           . .+.|+-+..
T Consensus         8 ~~~~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~-----------~-~~~~~~~~~   65 (357)
T 2fna_A            8 PKDNRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN-----------L-PYIYLDLRK   65 (357)
T ss_dssp             CCCSGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT-----------C-CEEEEEGGG
T ss_pred             CCCCHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC-----------C-CEEEEEchh
Confidence            34455789999999999888 652         5999999999999999999984421           1 233433332


Q ss_pred             CC-CCccCHHHHHHHHHHHHhcCC---CchhHHHHhhhc--chhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcE
Q psy9384          85 YD-LATFSVQNFIQSLVEQFSSSE---SPFSEAFSTIVE--DESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSY  158 (978)
Q Consensus        85 ~~-~~~~~~~~~l~sl~~QL~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  158 (978)
                      .. ....+...+++.+..+|....   ..+.+.+..+..  .+..................+.+.    +.+...  .++
T Consensus        66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~--~~~  139 (357)
T 2fna_A           66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLES----FEQASK--DNV  139 (357)
T ss_dssp             GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHH----HHHTCS--SCE
T ss_pred             hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHH----HHhcCC--CCe
Confidence            11 112344556666655553210   001110000000  000000000000000111222222    223221  379


Q ss_pred             EEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhc---------cc-C-ccccccccc
Q psy9384         159 FILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKM---------FL-G-FHKLSLDDL  227 (978)
Q Consensus       159 ~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~---------~~-~-~~~i~l~~~  227 (978)
                      +||||-++.++...    ..++...|..+....     .++.+++++|+... +...         +. . ...+.+...
T Consensus       140 vlvlDe~~~~~~~~----~~~~~~~l~~~~~~~-----~~~~~i~~g~~~~~-l~~~l~~~~~~~~l~~r~~~~i~l~~l  209 (357)
T 2fna_A          140 IIVLDEAQELVKLR----GVNLLPALAYAYDNL-----KRIKFIMSGSEMGL-LYDYLRVEDPESPLFGRAFSTVELKPF  209 (357)
T ss_dssp             EEEEETGGGGGGCT----TCCCHHHHHHHHHHC-----TTEEEEEEESSHHH-HHHHTTTTCTTSTTTTCCCEEEEECCC
T ss_pred             EEEEECHHHhhccC----chhHHHHHHHHHHcC-----CCeEEEEEcCchHH-HHHHHhccCCCCccccCccceeecCCC
Confidence            99999999987421    234566666665532     25688888886431 1111         11 1 134666544


Q ss_pred             cchhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         228 RKSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       228 ~~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      +.    +++..++...+...    ......   . ..+.+.++|+++++...+..+.
T Consensus       210 ~~----~e~~~~l~~~~~~~----~~~~~~---~-~~i~~~t~G~P~~l~~~~~~~~  254 (357)
T 2fna_A          210 SR----EEAIEFLRRGFQEA----DIDFKD---Y-EVVYEKIGGIPGWLTYFGFIYL  254 (357)
T ss_dssp             CH----HHHHHHHHHHHHHH----TCCCCC---H-HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CH----HHHHHHHHHHHHHc----CCCCCc---H-HHHHHHhCCCHHHHHHHHHHHc
Confidence            43    67888887765411    111111   1 7888999999999998887764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.43  E-value=9.7e-07  Score=102.88  Aligned_cols=213  Identities=15%  Similarity=0.140  Sum_probs=118.5

Q ss_pred             CCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccc
Q psy9384           4 ETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQ   83 (978)
Q Consensus         4 ~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~   83 (978)
                      .-|-....|+||+-.++++.+|+...    .++.+++.|+|++|.|||+|+..++.....   ..  ..-...+.+....
T Consensus       118 ~~P~~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~--~~f~~~v~wv~~~  188 (591)
T 1z6t_A          118 GVPQRPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSL---LE--GCFPGGVHWVSVG  188 (591)
T ss_dssp             TCCCCCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHH---HH--HHCTTCEEEEEEE
T ss_pred             CCCCCCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhH---HH--hhCCCceEEEECC
Confidence            34666788999999999999999852    235689999999999999999999854210   00  0001123333322


Q ss_pred             cCCCCccCHHHHHHHH---HHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEE
Q psy9384          84 SYDLATFSVQNFIQSL---VEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFI  160 (978)
Q Consensus        84 ~~~~~~~~~~~~l~sl---~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i  160 (978)
                      .  .   ....++..+   +.+|......         ..   ..        ....+.+...+...+..   ..+++++
T Consensus       189 ~--~---~~~~~~~~l~~l~~~l~~~~~~---------~~---~~--------~~~~~~~~~~l~~~l~~---~~~~~LL  240 (591)
T 1z6t_A          189 K--Q---DKSGLLMKLQNLCTRLDQDESF---------SQ---RL--------PLNIEEAKDRLRILMLR---KHPRSLL  240 (591)
T ss_dssp             S--C---CHHHHHHHHHHHHHHHCSSCCS---------CS---SC--------CCSHHHHHHHHHHHHHH---TCTTCEE
T ss_pred             C--C---chHHHHHHHHHHHHHhcccccc---------cc---CC--------CCCHHHHHHHHHHHHcc---CCCCeEE
Confidence            1  1   222333333   3333211000         00   00        00112222233333333   2357999


Q ss_pred             EEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHH
Q psy9384         161 LVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYI  240 (978)
Q Consensus       161 viDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi  240 (978)
                      |+|.++...             .+.        .++++.++|+|||....  .....+ ....+... ..-..+|...++
T Consensus       241 VLDdv~~~~-------------~l~--------~l~~~~~ilvTsR~~~~--~~~~~~-~~~~v~~l-~~L~~~ea~~L~  295 (591)
T 1z6t_A          241 ILDDVWDSW-------------VLK--------AFDSQCQILLTTRDKSV--TDSVMG-PKYVVPVE-SSLGKEKGLEIL  295 (591)
T ss_dssp             EEEEECCHH-------------HHH--------TTCSSCEEEEEESCGGG--GTTCCS-CEEEEECC-SSCCHHHHHHHH
T ss_pred             EEeCCCCHH-------------HHH--------HhcCCCeEEEECCCcHH--HHhcCC-CceEeecC-CCCCHHHHHHHH
Confidence            999997532             121        23556789999987652  222111 12222210 112346777777


Q ss_pred             HHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384         241 LLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISN  285 (978)
Q Consensus       241 ~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~  285 (978)
                      ..++...       .....+...+|+++.+|.++-+.++...+..
T Consensus       296 ~~~~~~~-------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~  333 (591)
T 1z6t_A          296 SLFVNMK-------KADLPEQAHSIIKECKGSPLVVSLIGALLRD  333 (591)
T ss_dssp             HHHHTSC-------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCC-------cccccHHHHHHHHHhCCCcHHHHHHHHHHhc
Confidence            7665421       1111346789999999999999999888864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.41  E-value=3.3e-06  Score=92.73  Aligned_cols=218  Identities=12%  Similarity=0.070  Sum_probs=119.7

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCc--eEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNG--GALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL   87 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~--~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~   87 (978)
                      ..|.||+-.++++.+|+....  ....+.  .++|+|+||+|||+|+..+...+....        ...+.|..|.    
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--------~~~~~~i~~~----   82 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWL--RNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--------TARFVYINGF----   82 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHH--HSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--------CCEEEEEETT----
T ss_pred             CCCCChHHHHHHHHHHHHHHH--cCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--------CeeEEEEeCc----
Confidence            679999998888877776510  001334  799999999999999999986543210        2234444433    


Q ss_pred             CccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384          88 ATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE  167 (978)
Q Consensus        88 ~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE  167 (978)
                      ...++..+++.++.++....+..         .             .+. ..+.+.+...+..   ...+.+||||-+|.
T Consensus        83 ~~~~~~~~~~~l~~~l~~~~~~~---------~-------------~~~-~~~~~~l~~~l~~---~~~~~vlilDE~~~  136 (389)
T 1fnn_A           83 IYRNFTAIIGEIARSLNIPFPRR---------G-------------LSR-DEFLALLVEHLRE---RDLYMFLVLDDAFN  136 (389)
T ss_dssp             TCCSHHHHHHHHHHHTTCCCCSS---------C-------------CCH-HHHHHHHHHHHHH---TTCCEEEEEETGGG
T ss_pred             cCCCHHHHHHHHHHHhCccCCCC---------C-------------CCH-HHHHHHHHHHHhh---cCCeEEEEEECccc
Confidence            23467788888888875432210         0             000 1111122222222   24578999999888


Q ss_pred             ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeeccccc--chhhc-ccCcc--ccccccccchhhhhHHHHHHHH
Q psy9384         168 THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSK--SIKKM-FLGFH--KLSLDDLRKSHVIRDMQQYILL  242 (978)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~--~i~~~-~~~~~--~i~l~~~~~~~~~~Di~~yi~~  242 (978)
                      .+..        ....|.+++.........++.+|++++....  .+... .+.+.  .+.+...+    .+++..++..
T Consensus       137 l~~~--------~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~----~~~~~~~l~~  204 (389)
T 1fnn_A          137 LAPD--------ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT----KDQIFDILLD  204 (389)
T ss_dssp             SCHH--------HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB----HHHHHHHHHH
T ss_pred             cchH--------HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC----HHHHHHHHHH
Confidence            7422        1223333332111000135677777765420  11111 11111  35665443    3688888888


Q ss_pred             HhcCchHHHhhcCcChHHHHHHHHhhc---------hhhHHHHHHHHhhh
Q psy9384         243 RLASEESLRVHMNRDTAEMLNQLHIKS---------NGCFLYLERVLDGI  283 (978)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a---------~g~flw~~~~~~~l  283 (978)
                      ++....    ......++..+.+.+.+         .|.+..+.-.++..
T Consensus       205 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a  250 (389)
T 1fnn_A          205 RAKAGL----AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS  250 (389)
T ss_dssp             HHHHHB----CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred             HHHhhc----CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence            775210    01234456778888888         79887776666554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.39  E-value=1.4e-06  Score=95.58  Aligned_cols=220  Identities=11%  Similarity=0.078  Sum_probs=120.0

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhh-ccceeeeccccCCCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLR-KKLLAYHFCQSYDLA   88 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~-~~~~~~ff~~~~~~~   88 (978)
                      ..|.||+-.++.+.+|+...-  .....+.+.|+|+||+|||+|+..+...+..       ..+ ...+.|+.|..    
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~-------~~~~~~~~~~i~~~~----   86 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSKLHK-------KFLGKFKHVYINTRQ----   86 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHHHHH-------HTCSSCEEEEEEHHH----
T ss_pred             CCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-------HhcCCceEEEEECCC----
Confidence            679999999999999887410  1124568999999999999999999854321       000 23344444432    


Q ss_pred             ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                      ..++..++..++.+|....+.         ..             .+. ..+.+.+...+..   ...+.++|||-+|..
T Consensus        87 ~~~~~~~~~~i~~~l~~~~~~---------~~-------------~~~-~~~~~~l~~~l~~---~~~~~vlilDE~~~l  140 (386)
T 2qby_A           87 IDTPYRVLADLLESLDVKVPF---------TG-------------LSI-AELYRRLVKAVRD---YGSQVVIVLDEIDAF  140 (386)
T ss_dssp             HCSHHHHHHHHTTTTSCCCCS---------SS-------------CCH-HHHHHHHHHHHHT---CCSCEEEEEETHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCCCC---------CC-------------CCH-HHHHHHHHHHHhc---cCCeEEEEEcChhhh
Confidence            225556666666655322110         00             001 1222222222322   244789999999888


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc--cchhh-cccCc--cccccccccchhhhhHHHHHHHHH
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS--KSIKK-MFLGF--HKLSLDDLRKSHVIRDMQQYILLR  243 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~--~~i~~-~~~~~--~~i~l~~~~~~~~~~Di~~yi~~~  243 (978)
                      ....    ..+.+..+.+.....   ...++.+|++++...  ..+.. ..+.+  ..+.+...+    .+|+..++..+
T Consensus       141 ~~~~----~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~----~~~~~~il~~~  209 (386)
T 2qby_A          141 VKKY----NDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYN----AEELEDILTKR  209 (386)
T ss_dssp             HHSS----CSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCC----HHHHHHHHHHH
T ss_pred             hccC----cCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCC----HHHHHHHHHHH
Confidence            6421    123333444433321   134567777776542  11111 11122  356665444    37888888877


Q ss_pred             hcCchHHHhhcCcChHHHHHHHHhhch---hhHHHHHHHHhhh
Q psy9384         244 LASEESLRVHMNRDTAEMLNQLHIKSN---GCFLYLERVLDGI  283 (978)
Q Consensus       244 l~~~~~~~~~~~~~~~~i~~~l~~~a~---g~flw~~~~~~~l  283 (978)
                      +...    ........++.+.+.+.+.   |.+..+.-.++..
T Consensus       210 ~~~~----~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a  248 (386)
T 2qby_A          210 AQMA----FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS  248 (386)
T ss_dssp             HHHH----BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHhh----ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            6411    0112344566777777777   8887665555544

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.39  E-value=1.5e-06  Score=95.22  Aligned_cols=220  Identities=14%  Similarity=0.080  Sum_probs=117.5

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.||+-.++++.+|+..-.  ..+..+.++|+|+||+|||+|+..+...+....... ...+...+.|.-|.    ..
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~-~~~~~~~~~~i~~~----~~   92 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKED-EEYKDVKQAYVNCR----EV   92 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHS-SSSTTCEEEEEEHH----HH
T ss_pred             CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhh-cCCCCceEEEEECc----cC
Confidence            569999998888776665410  112456899999999999999999985542100000 00002223333322    22


Q ss_pred             c-CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 F-SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~-~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                      . ++..+++.++.+|....+..        ..             .+. ..+.+.+...+..    .+. +||||-+|..
T Consensus        93 ~~~~~~~~~~l~~~l~~~~~~~--------~~-------------~~~-~~~~~~l~~~l~~----~~~-vlilDEi~~l  145 (384)
T 2qby_B           93 GGTPQAVLSSLAGKLTGFSVPK--------HG-------------INL-GEYIDKIKNGTRN----IRA-IIYLDEVDTL  145 (384)
T ss_dssp             CSCHHHHHHHHHHHHHCSCCCS--------SS-------------SCT-HHHHHHHHHHHSS----SCE-EEEEETTHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCCC--------CC-------------CCH-HHHHHHHHHHhcc----CCC-EEEEECHHHh
Confidence            3 67788888888886432210        00             000 1111112222222    223 9999999988


Q ss_pred             cccCCCcCCCcchhh-HHHHHHhccCCCCCceeeeeeecccc--cchhhcc-cC-ccccccccccchhhhhHHHHHHHHH
Q psy9384         169 HVTNKKIYSDKATCS-IADLLARNHHLFPPWLFLFCTVRRQS--KSIKKMF-LG-FHKLSLDDLRKSHVIRDMQQYILLR  243 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~~~sr~~~--~~i~~~~-~~-~~~i~l~~~~~~~~~~Di~~yi~~~  243 (978)
                      ....    ..   .. +..++...     .++.+|++++...  ..+...+ +. ...+.+...+    .+|+..++..+
T Consensus       146 ~~~~----~~---~~~l~~l~~~~-----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~----~~~~~~il~~~  209 (384)
T 2qby_B          146 VKRR----GG---DIVLYQLLRSD-----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYD----AEQLKFILSKY  209 (384)
T ss_dssp             HHST----TS---HHHHHHHHTSS-----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCC----HHHHHHHHHHH
T ss_pred             ccCC----CC---ceeHHHHhcCC-----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCC----HHHHHHHHHHH
Confidence            6421    01   13 33333321     4678888887652  1122111 11 1256665443    47888888887


Q ss_pred             hcCchHHHhhcCcChHHHHHHHHhhch---hhHHHHHHHHhhh
Q psy9384         244 LASEESLRVHMNRDTAEMLNQLHIKSN---GCFLYLERVLDGI  283 (978)
Q Consensus       244 l~~~~~~~~~~~~~~~~i~~~l~~~a~---g~flw~~~~~~~l  283 (978)
                      +...  +.  .....++..+.+.+.+.   |....+.-.++..
T Consensus       210 ~~~~--~~--~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a  248 (384)
T 2qby_B          210 AEYG--LI--KGTYDDEILSYIAAISAKEHGDARKAVNLLFRA  248 (384)
T ss_dssp             HHHT--SC--TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHhh--cc--cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            7521  00  11233456677777777   8877666555554

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.29  E-value=1.7e-06  Score=92.03  Aligned_cols=192  Identities=15%  Similarity=0.159  Sum_probs=107.5

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.|++-..+.+.+|+...      ..+.+.|+|+||+|||+++..+...+....       ....+.++-+.  ... 
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-------~~~~~~~~~~~--~~~-   80 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGEN-------WRDNFIEMNAS--DER-   80 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC-------HHHHCEEEETT--STT-
T ss_pred             HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc-------ccCCeEEEeCc--ccc-
Confidence            45788888888999999863      222389999999999999999986542110       01112222221  100 


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                       .. ..++.++.++...                                           ......++.++|||-.|...
T Consensus        81 -~~-~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~vliiDe~~~l~  115 (319)
T 2chq_A           81 -GI-DVVRHKIKEFART-------------------------------------------APIGGAPFKIIFLDEADALT  115 (319)
T ss_dssp             -CT-TTSSHHHHHHHHS-------------------------------------------CCSSSCCCEEEEEETGGGSC
T ss_pred             -Ch-HHHHHHHHHHHhc-------------------------------------------CCCCCCCceEEEEeCCCcCC
Confidence             00 0001111111100                                           00011345789999888876


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      ...    ..    .|.+++    ...|+++.+|+++.+...-.....+.+..+.+...+    .+++..++...+...  
T Consensus       116 ~~~----~~----~L~~~l----e~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~----~~~~~~~l~~~~~~~--  177 (319)
T 2chq_A          116 ADA----QA----ALRRTM----EMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP----KEAMKKRLLEICEKE--  177 (319)
T ss_dssp             HHH----HH----TTGGGT----SSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC----HHHHHHHHHHHHHTT--
T ss_pred             HHH----HH----HHHHHH----HhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC----HHHHHHHHHHHHHHc--
Confidence            321    11    122222    234567778887766543223333344556665443    478888888776532  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                          .....++..+.|.+.++|....+.-.++.+.
T Consensus       178 ----~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~  208 (319)
T 2chq_A          178 ----GVKITEDGLEALIYISGGDFRKAINALQGAA  208 (319)
T ss_dssp             ----CCCBCHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                1223456778888999999988877776654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.28  E-value=8.6e-06  Score=88.74  Aligned_cols=210  Identities=13%  Similarity=0.106  Sum_probs=113.3

Q ss_pred             CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384           8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL   87 (978)
Q Consensus         8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~   87 (978)
                      .-..|.||+-..+.+..|+...+     ....++|+|+||+|||+++..+...+....       ......+..|.    
T Consensus        14 ~~~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~-------~~~~~~~~~~~----   77 (373)
T 1jr3_A           14 TFADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCET-------GITATPCGVCD----   77 (373)
T ss_dssp             STTTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-------CSCSSCCSSSH----
T ss_pred             chhhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-------CCCCCCCcccH----
Confidence            33568999999999999998642     345788999999999999999985543210       00001111110    


Q ss_pred             CccCHHHHHHHHHHHHhc-CCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384          88 ATFSVQNFIQSLVEQFSS-SESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID  166 (978)
Q Consensus        88 ~~~~~~~~l~sl~~QL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD  166 (978)
                            .     +..+.. ..+.+..    + .. .  .    .....    .+..++.. +.......++.++|||-+|
T Consensus        78 ------~-----~~~~~~~~~~~~~~----~-~~-~--~----~~~~~----~~~~l~~~-~~~~~~~~~~~vliiDe~~  129 (373)
T 1jr3_A           78 ------N-----CREIEQGRFVDLIE----I-DA-A--S----RTKVE----DTRDLLDN-VQYAPARGRFKVYLIDEVH  129 (373)
T ss_dssp             ------H-----HHHHHTSCCSSCEE----E-ET-T--C----SCCSS----CHHHHHHH-TTSCCSSSSSEEEEEECGG
T ss_pred             ------H-----HHHHhccCCCceEE----e-cc-c--c----cCCHH----HHHHHHHH-HhhccccCCeEEEEEECcc
Confidence                  0     111111 1111110    0 00 0  0    00001    12222222 1122223456789999888


Q ss_pred             cccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcC
Q psy9384         167 ETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLAS  246 (978)
Q Consensus       167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~  246 (978)
                      .....        ....|.+++.    ..|.++.+|+++...........+.+..+.+...+    .+++..++..++..
T Consensus       130 ~l~~~--------~~~~Ll~~le----~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~----~~~~~~~l~~~~~~  193 (373)
T 1jr3_A          130 MLSRH--------SFNALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD----VEQIRHQLEHILNE  193 (373)
T ss_dssp             GSCHH--------HHHHHHHHHH----SCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHH
T ss_pred             hhcHH--------HHHHHHHHHh----cCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC----HHHHHHHHHHHHHH
Confidence            87532        1233444444    33556777777765432222333344556665443    47888888877652


Q ss_pred             chHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         247 EESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                      .      ......+..+.+.+.++|....+.-.++.+
T Consensus       194 ~------~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~  224 (373)
T 1jr3_A          194 E------HIAHEPRALQLLARAAEGSLRDALSLTDQA  224 (373)
T ss_dssp             H------TCCBCHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred             c------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            1      122334567888899999988777666554

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.25  E-value=3.1e-06  Score=90.35  Aligned_cols=194  Identities=18%  Similarity=0.174  Sum_probs=108.0

Q ss_pred             CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCC
Q psy9384           8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDL   87 (978)
Q Consensus         8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~   87 (978)
                      .-..|.|++-..+.+..|+...      ..+.++|+|+||+|||+++..+...+...         .....++..+..+ 
T Consensus        23 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~---------~~~~~~~~~~~~~-   86 (327)
T 1iqp_A           23 RLDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGE---------NWRHNFLELNASD-   86 (327)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGG---------GHHHHEEEEETTC-
T ss_pred             CHHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCC---------cccCceEEeeccc-
Confidence            3356889999999999999974      22348999999999999999998554210         1011111111110 


Q ss_pred             CccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccc
Q psy9384          88 ATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDE  167 (978)
Q Consensus        88 ~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE  167 (978)
                       . .....++..+.++...                                       .++.    ..++.++|||.+|.
T Consensus        87 -~-~~~~~~~~~~~~~~~~---------------------------------------~~~~----~~~~~vliiDe~~~  121 (327)
T 1iqp_A           87 -E-RGINVIREKVKEFART---------------------------------------KPIG----GASFKIIFLDEADA  121 (327)
T ss_dssp             -H-HHHHTTHHHHHHHHHS---------------------------------------CCGG----GCSCEEEEEETGGG
T ss_pred             -c-CchHHHHHHHHHHHhh---------------------------------------CCcC----CCCCeEEEEeCCCc
Confidence             0 0000111111111000                                       0010    13457899998888


Q ss_pred             ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCc
Q psy9384         168 THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                      ....        ....|.+++..    .+.++++++++...........+.+..+.+...+    .+|+..++...+...
T Consensus       122 l~~~--------~~~~L~~~le~----~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~----~~~~~~~l~~~~~~~  185 (327)
T 1iqp_A          122 LTQD--------AQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR----DEDIAKRLRYIAENE  185 (327)
T ss_dssp             SCHH--------HHHHHHHHHHH----TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC----HHHHHHHHHHHHHTT
T ss_pred             CCHH--------HHHHHHHHHHh----cCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC----HHHHHHHHHHHHHhc
Confidence            7532        12344455543    2446777777766543222222334455654433    478888888766532


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      .      ....++..+.+++.++|...-+.-.++.+.
T Consensus       186 ~------~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~  216 (327)
T 1iqp_A          186 G------LELTEEGLQAILYIAEGDMRRAINILQAAA  216 (327)
T ss_dssp             T------CEECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             C------CCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            1      123356678888899999887776666554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.22  E-value=9.5e-06  Score=104.17  Aligned_cols=213  Identities=16%  Similarity=0.134  Sum_probs=122.2

Q ss_pred             CCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecccc
Q psy9384           5 TPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS   84 (978)
Q Consensus         5 ~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~   84 (978)
                      -|-+...|+||+-.++++.++|...    .+..+++.|+|++|.|||+|+..++.....    . .  ....-..||..-
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~----~-~--~~~~~~~~~v~~  187 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSL----L-E--GCFSGGVHWVSI  187 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHH----H-T--TTSTTCEEEEEC
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhH----H-H--hhCCCeEEEEEE
Confidence            4556678999999999999999652    235688999999999999999999855210    0 0  001111112222


Q ss_pred             CCCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEec
Q psy9384          85 YDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDS  164 (978)
Q Consensus        85 ~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDa  164 (978)
                      ...........++.++.+|........       .             .....+.+...+...+..   ..+++.||+|.
T Consensus       188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~-------------~~~~~~~~~~~l~~~l~~---~~~~~LlvlDd  244 (1249)
T 3sfz_A          188 GKQDKSGLLMKLQNLCMRLDQEESFSQ-------R-------------LPLNIEEAKDRLRVLMLR---KHPRSLLILDD  244 (1249)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTTTCTTCS-------S-------------CCSSHHHHHHHHHHHTSS---SSCSCEEEEES
T ss_pred             CCcCchHHHHHHHHHHHHhhhhccccc-------C-------------CCCCHHHHHHHHHHHHhc---cCCCEEEEEec
Confidence            222334455567777777765421100       0             000112333333333322   24589999999


Q ss_pred             cccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchh-hcccCcccccccc-ccchhhhhHHHHHHHH
Q psy9384         165 IDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIK-KMFLGFHKLSLDD-LRKSHVIRDMQQYILL  242 (978)
Q Consensus       165 LDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~-~~~~~~~~i~l~~-~~~~~~~~Di~~yi~~  242 (978)
                      +++..             .+.        .++++.++|+|||...  +. ........+.+.. ...    ++-..++..
T Consensus       245 ~~~~~-------------~~~--------~~~~~~~ilvTtR~~~--~~~~~~~~~~~~~~~~~l~~----~~a~~l~~~  297 (1249)
T 3sfz_A          245 VWDPW-------------VLK--------AFDNQCQILLTTRDKS--VTDSVMGPKHVVPVESGLGR----EKGLEILSL  297 (1249)
T ss_dssp             CCCHH-------------HHT--------TTCSSCEEEEEESSTT--TTTTCCSCBCCEECCSSCCH----HHHHHHHHH
T ss_pred             CCCHH-------------HHH--------hhcCCCEEEEEcCCHH--HHHhhcCCceEEEecCCCCH----HHHHHHHHH
Confidence            98643             111        2244568999998764  33 2233333444432 232    333334433


Q ss_pred             HhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhc
Q psy9384         243 RLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISN  285 (978)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~  285 (978)
                      +...       ......++..+|+++.+|.+|-++++-..|..
T Consensus       298 ~~~~-------~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~  333 (1249)
T 3sfz_A          298 FVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRD  333 (1249)
T ss_dssp             HHTS-------CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hhCC-------ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence            3321       12233456889999999999999988888864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.20  E-value=9.3e-06  Score=78.97  Aligned_cols=48  Identities=19%  Similarity=0.405  Sum_probs=39.5

Q ss_pred             CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .-..|.||+-.++++.+|+...      ..+.++|+|+||+|||+|+..+...+
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           20 KLDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3456899999899999998763      44668999999999999999998554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.19  E-value=1.5e-05  Score=84.64  Aligned_cols=193  Identities=16%  Similarity=0.136  Sum_probs=105.9

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.|++-..+.+.+|+....     ..+++.++|+||+|||+++..+...+.              ..+++.+..+.  
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~--------------~~~~~i~~~~~--   84 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN--------------ADMMFVNGSDC--   84 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT--------------EEEEEEETTTC--
T ss_pred             HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC--------------CCEEEEccccc--
Confidence            457888888889999999632     446788889999999999999975431              22333332221  


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                       . ...++.++.+.+..                                            .......-+++||-+|...
T Consensus        85 -~-~~~i~~~~~~~~~~--------------------------------------------~~~~~~~~vliiDEi~~l~  118 (324)
T 3u61_B           85 -K-IDFVRGPLTNFASA--------------------------------------------ASFDGRQKVIVIDEFDRSG  118 (324)
T ss_dssp             -C-HHHHHTHHHHHHHB--------------------------------------------CCCSSCEEEEEEESCCCGG
T ss_pred             -C-HHHHHHHHHHHHhh--------------------------------------------cccCCCCeEEEEECCcccC
Confidence             1 23333333332221                                            1111245689999888875


Q ss_pred             -ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         170 -VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       170 -~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                       .+        ....|.+++...    +.++.+|+++.+...-.....+.+..+.+...+.++..+.++.++.. +... 
T Consensus       119 ~~~--------~~~~L~~~le~~----~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~-l~~~-  184 (324)
T 3u61_B          119 LAE--------SQRHLRSFMEAY----SSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRR-LTEI-  184 (324)
T ss_dssp             GHH--------HHHHHHHHHHHH----GGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHH-HHHH-
T ss_pred             cHH--------HHHHHHHHHHhC----CCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH-HHHH-
Confidence             32        123455555433    34567888777654322222233445666544433333333443332 2111 


Q ss_pred             HHHhhcCcChH-HHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         249 SLRVHMNRDTA-EMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       249 ~~~~~~~~~~~-~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                       .........+ +..+.+++.++|...-+...++.+.
T Consensus       185 -~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~  220 (324)
T 3u61_B          185 -CKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS  220 (324)
T ss_dssp             -HHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred             -HHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence             1111122233 7778888888888766655555554

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.13  E-value=1.1e-05  Score=91.31  Aligned_cols=207  Identities=13%  Similarity=0.113  Sum_probs=107.8

Q ss_pred             CCcccccccchHHHHHHHhcCC-----CC------CCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccce
Q psy9384           9 SKKFFCREWAFVKLVHCLESKT-----NS------KPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLL   77 (978)
Q Consensus         9 ~~~f~~r~w~~~~~~~wl~~~~-----~~------~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~   77 (978)
                      -..+.|++-..+++.+|+..-.     ..      ..+..+.++|+|+||+|||+++..+...+.              .
T Consensus        38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--------------~  103 (516)
T 1sxj_A           38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--------------Y  103 (516)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--------------C
T ss_pred             HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--------------C
Confidence            3467888888888989987510     00      001346899999999999999999985541              1


Q ss_pred             eeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCc
Q psy9384          78 AYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTS  157 (978)
Q Consensus        78 ~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  157 (978)
                      .+++.+..  ...+. .++...+.......              .....                 +............+
T Consensus       104 ~~i~in~s--~~~~~-~~~~~~i~~~~~~~--------------~~~~~-----------------~~~~~~~~~~~~~~  149 (516)
T 1sxj_A          104 DILEQNAS--DVRSK-TLLNAGVKNALDNM--------------SVVGY-----------------FKHNEEAQNLNGKH  149 (516)
T ss_dssp             EEEEECTT--SCCCH-HHHHHTGGGGTTBC--------------CSTTT-----------------TTC----CCSSTTS
T ss_pred             CEEEEeCC--CcchH-HHHHHHHHHHhccc--------------cHHHH-----------------HhhhhhhhhccCCC
Confidence            22222221  11221 22222222111110              00000                 00000001123456


Q ss_pred             EEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeec-ccccchhhcccCccccccccccchhhhhHH
Q psy9384         158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVR-RQSKSIKKMFLGFHKLSLDDLRKSHVIRDM  236 (978)
Q Consensus       158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr-~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di  236 (978)
                      .+||||-+|.....     ....+..|.+++....      ..+++++. +..+.++...+....+.+...+    .+++
T Consensus       150 ~vliIDEid~l~~~-----~~~~l~~L~~~l~~~~------~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~----~~~~  214 (516)
T 1sxj_A          150 FVIIMDEVDGMSGG-----DRGGVGQLAQFCRKTS------TPLILICNERNLPKMRPFDRVCLDIQFRRPD----ANSI  214 (516)
T ss_dssp             EEEEECSGGGCCTT-----STTHHHHHHHHHHHCS------SCEEEEESCTTSSTTGGGTTTSEEEECCCCC----HHHH
T ss_pred             eEEEEECCCccchh-----hHHHHHHHHHHHHhcC------CCEEEEEcCCCCccchhhHhceEEEEeCCCC----HHHH
Confidence            89999999988643     2233455666665431      23444443 3333344433334456664433    3566


Q ss_pred             HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..++.......      .....++..+.|++.+.|...-+.-.++.+.
T Consensus       215 ~~~L~~i~~~~------~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~  256 (516)
T 1sxj_A          215 KSRLMTIAIRE------KFKLDPNVIDRLIQTTRGDIRQVINLLSTIS  256 (516)
T ss_dssp             HHHHHHHHHHH------TCCCCTTHHHHHHHHTTTCHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHc------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            66665444311      1123345678888999999887777766654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.05  E-value=1.3e-05  Score=81.27  Aligned_cols=46  Identities=13%  Similarity=0.113  Sum_probs=33.8

Q ss_pred             Ccccccc---cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCRE---WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~---w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|.|++   .+++.+..|+..+      ..+.++|+|+||+|||+|+..+...+
T Consensus        28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4566643   4556678887753      45689999999999999999998543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.02  E-value=7.8e-06  Score=84.42  Aligned_cols=164  Identities=18%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS  115 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~  115 (978)
                      .++-++|+|+||+|||+++..++..+......  ..  -..+.|.+.+  -....++..+++.|+.||......      
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~--~~--~~~~~~v~IN--c~~~~t~~~~~~~I~~~L~g~~~~------  111 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDELITSSAR--KE--LPIFDYIHID--ALELAGMDALYEKIWFAISKENLC------  111 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTT--TS--SCCEEEEEEE--TTCCC--HHHHHHHHHHHSCCC--------
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhh--cc--CCceEEEEEe--ccccCCHHHHHHHHHHHhcCCCCC------
Confidence            56678999999999999999999776431100  00  0123333332  234457788999999999643111      


Q ss_pred             hhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCC
Q psy9384         116 TIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLF  195 (978)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~  195 (978)
                         .              ......+.++|.....   ....++++++|-+|-..       ..+   .|..+++-. ..-
T Consensus       112 ---~--------------~~~~~~L~~~f~~~~~---~~~~~~ii~lDE~d~l~-------~q~---~L~~l~~~~-~~~  160 (318)
T 3te6_A          112 ---G--------------DISLEALNFYITNVPK---AKKRKTLILIQNPENLL-------SEK---ILQYFEKWI-SSK  160 (318)
T ss_dssp             ---C--------------CCCHHHHHHHHHHSCG---GGSCEEEEEEECCSSSC-------CTH---HHHHHHHHH-HCS
T ss_pred             ---c--------------hHHHHHHHHHHHHhhh---ccCCceEEEEecHHHhh-------cch---HHHHHHhcc-ccc
Confidence               0              0011233444432211   12456899999888875       122   333444311 111


Q ss_pred             CCceeeeeeeccc-ccc--hhhcc-cCc--cccccccccchhhhhHHHHHHHHHhcC
Q psy9384         196 PPWLFLFCTVRRQ-SKS--IKKMF-LGF--HKLSLDDLRKSHVIRDMQQYILLRLAS  246 (978)
Q Consensus       196 ~~~~~~~~~sr~~-~~~--i~~~~-~~~--~~i~l~~~~~~~~~~Di~~yi~~~l~~  246 (978)
                      .+.+.+|+++... .+.  +..++ +.+  ..|.+..++.    ++|..++..|+..
T Consensus       161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~----~el~~Il~~Rl~~  213 (318)
T 3te6_A          161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDK----NELQQMIITRLKS  213 (318)
T ss_dssp             SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCH----HHHHHHHHHHHHH
T ss_pred             CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCH----HHHHHHHHHHHHh
Confidence            2345666666543 221  22111 111  3466655554    8899999999874

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.00  E-value=4.4e-05  Score=83.88  Aligned_cols=188  Identities=14%  Similarity=0.129  Sum_probs=104.2

Q ss_pred             Ccccccccch---HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384          10 KKFFCREWAF---VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD   86 (978)
Q Consensus        10 ~~f~~r~w~~---~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~   86 (978)
                      ..|+|.+-++   ..+..++...      ....+.|+|+||+|||+|+..+...+..              .|+.++...
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~--------------~f~~l~a~~   85 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANA--------------DVERISAVT   85 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTC--------------EEEEEETTT
T ss_pred             HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCC--------------CeEEEEecc
Confidence            4577888777   5678888864      2256899999999999999999855421              112212111


Q ss_pred             CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384          87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID  166 (978)
Q Consensus        87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD  166 (978)
                      .   .. .-++.++.+.                                        .....     ...+.+++||-+|
T Consensus        86 ~---~~-~~ir~~~~~a----------------------------------------~~~~~-----~~~~~iLfIDEI~  116 (447)
T 3pvs_A           86 S---GV-KEIREAIERA----------------------------------------RQNRN-----AGRRTILFVDEVH  116 (447)
T ss_dssp             C---CH-HHHHHHHHHH----------------------------------------HHHHH-----TTCCEEEEEETTT
T ss_pred             C---CH-HHHHHHHHHH----------------------------------------HHhhh-----cCCCcEEEEeChh
Confidence            0   11 1111111100                                        00000     1345799999999


Q ss_pred             cccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc-cchh-hcccCccccccccccchhhhhHHHHHHHHHh
Q psy9384         167 ETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS-KSIK-KMFLGFHKLSLDDLRKSHVIRDMQQYILLRL  244 (978)
Q Consensus       167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~-~~i~-~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l  244 (978)
                      ......    +..++..+.+          ..+.+|.++.... ..+. ..++.+..+.+...+    .+|+..++...+
T Consensus       117 ~l~~~~----q~~LL~~le~----------~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~----~edi~~il~~~l  178 (447)
T 3pvs_A          117 RFNKSQ----QDAFLPHIED----------GTITFIGATTENPSFELNSALLSRARVYLLKSLS----TEDIEQVLTQAM  178 (447)
T ss_dssp             CC----------CCHHHHHT----------TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCC----HHHHHHHHHHHH
T ss_pred             hhCHHH----HHHHHHHHhc----------CceEEEecCCCCcccccCHHHhCceeEEeeCCcC----HHHHHHHHHHHH
Confidence            886432    3334444332          1345555553322 2232 334445556665443    488999998888


Q ss_pred             cCch-HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         245 ASEE-SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       245 ~~~~-~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      .... .+........++..+.|++.+.|...-+.-.++.+.
T Consensus       179 ~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~  219 (447)
T 3pvs_A          179 EDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMA  219 (447)
T ss_dssp             HCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            7532 111122234567888899999999887777777664

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.99  E-value=3.5e-05  Score=83.10  Aligned_cols=203  Identities=14%  Similarity=0.091  Sum_probs=107.3

Q ss_pred             CCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCC
Q psy9384           9 SKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLA   88 (978)
Q Consensus         9 ~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~   88 (978)
                      -..+.|++-+.+.+..|+...      ..+.++|+|+||+|||+++..+...+..+      ......+.+.  +..+  
T Consensus        36 ~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~------~~~~~~~~~~--~~~~--   99 (353)
T 1sxj_D           36 LDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGP------DLMKSRILEL--NASD--   99 (353)
T ss_dssp             TTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHH------HHHTTSEEEE--CSSS--
T ss_pred             HHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCC------cccccceEEE--cccc--
Confidence            356889999999999999863      11238999999999999999998554210      0011112222  2111  


Q ss_pred             ccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          89 TFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        89 ~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                      . .....++..+.........          .     ..      ..    ..        ........-+++||-+|..
T Consensus       100 ~-~~~~~~~~~~~~~~~~~~~----------~-----~~------~~----~~--------~~~~~~~~~vliiDE~~~l  145 (353)
T 1sxj_D          100 E-RGISIVREKVKNFARLTVS----------K-----PS------KH----DL--------ENYPCPPYKIIILDEADSM  145 (353)
T ss_dssp             C-CCHHHHTTHHHHHHHSCCC----------C-----CC------TT----HH--------HHSCCCSCEEEEETTGGGS
T ss_pred             c-cchHHHHHHHHHHhhhccc----------c-----cc------hh----hc--------ccCCCCCceEEEEECCCcc
Confidence            1 1122233322222211000          0     00      00    00        0001123468889988887


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      ....        ...|.+++...    +...++++++...........+.+..+.+....    .+++..++..++... 
T Consensus       146 ~~~~--------~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~----~~~~~~~l~~~~~~~-  208 (353)
T 1sxj_D          146 TADA--------QSALRRTMETY----SGVTRFCLICNYVTRIIDPLASQCSKFRFKALD----ASNAIDRLRFISEQE-  208 (353)
T ss_dssp             CHHH--------HHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHHHSEEEECCCCC----HHHHHHHHHHHHHTT-
T ss_pred             CHHH--------HHHHHHHHHhc----CCCceEEEEeCchhhCcchhhccCceEEeCCCC----HHHHHHHHHHHHHHh-
Confidence            5321        22344555432    335567776655443223323334455554433    367888887766521 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                           .....++..+.+++.+.|...-+...++.+
T Consensus       209 -----~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~  238 (353)
T 1sxj_D          209 -----NVKCDDGVLERILDISAGDLRRGITLLQSA  238 (353)
T ss_dssp             -----TCCCCHHHHHHHHHHTSSCHHHHHHHHHHT
T ss_pred             -----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 122445678888899999876655555443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.96  E-value=0.00013  Score=79.04  Aligned_cols=48  Identities=19%  Similarity=0.222  Sum_probs=35.0

Q ss_pred             cccccccchHH---HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          11 KFFCREWAFVK---LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        11 ~f~~r~w~~~~---~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .|.|++-..+.   +.+++...    ....+.+.|+|+||+|||+++..+...+.
T Consensus        45 ~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           45 GMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             hccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            57888777654   45666542    11235789999999999999999986653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.94  E-value=2.3e-05  Score=75.62  Aligned_cols=48  Identities=17%  Similarity=0.425  Sum_probs=39.6

Q ss_pred             CCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           8 QSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         8 ~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .-..|.||+-.++.+.+++...      ..+.++|+|+||+|||+|+..+...+
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           20 KLDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             ccchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3457899999899999998763      44567999999999999999998654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.86  E-value=6.7e-05  Score=80.86  Aligned_cols=107  Identities=8%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             CcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhH
Q psy9384         156 TSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRD  235 (978)
Q Consensus       156 ~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~D  235 (978)
                      ++-++|||-.|..+...        ...|.+++...    +.+..+|++|......+....+.+..+++...+    .++
T Consensus       134 ~~~vlilDE~~~L~~~~--------~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~----~~~  197 (354)
T 1sxj_E          134 RYKCVIINEANSLTKDA--------QAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPS----DSE  197 (354)
T ss_dssp             CCEEEEEECTTSSCHHH--------HHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCC----HHH
T ss_pred             CCeEEEEeCccccCHHH--------HHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcC----HHH
Confidence            44588888877765321        22344555432    345677777755443233333444556665433    367


Q ss_pred             HHHHHHHHhcCchHHHhhcCcCh-HHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         236 MQQYILLRLASEESLRVHMNRDT-AEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       236 i~~yi~~~l~~~~~~~~~~~~~~-~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      +..++...+...      ..... ++..+.+++.++|...-+...++.+.
T Consensus       198 ~~~~l~~~~~~~------~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~  241 (354)
T 1sxj_E          198 ISTILSDVVTNE------RIQLETKDILKRIAQASNGNLRVSLLMLESMA  241 (354)
T ss_dssp             HHHHHHHHHHHH------TCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHc------CCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888887665421      11122 46678888999999888887777664

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.85  E-value=0.00011  Score=78.39  Aligned_cols=189  Identities=14%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFS   91 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~   91 (978)
                      +.|.+.+.+.+..|+...      .-+-+.++|+||+|||+++..+...+...         .....+...+..+  ...
T Consensus        27 ~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~~---------~~~~~~~~~~~~~--~~~   89 (340)
T 1sxj_C           27 VYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGK---------NYSNMVLELNASD--DRG   89 (340)
T ss_dssp             CCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTT---------SHHHHEEEECTTS--CCS
T ss_pred             hcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCC---------CccceEEEEcCcc--ccc
Confidence            456677778899999853      11128999999999999999998554221         0011111112111  111


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccccc
Q psy9384          92 VQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHVT  171 (978)
Q Consensus        92 ~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~~  171 (978)
                       ...+|.++.++.....                                         ..  ....-++|||-.|-....
T Consensus        90 -~~~ir~~i~~~~~~~~-----------------------------------------~~--~~~~~viiiDe~~~l~~~  125 (340)
T 1sxj_C           90 -IDVVRNQIKDFASTRQ-----------------------------------------IF--SKGFKLIILDEADAMTNA  125 (340)
T ss_dssp             -HHHHHTHHHHHHHBCC-----------------------------------------SS--SCSCEEEEETTGGGSCHH
T ss_pred             -HHHHHHHHHHHHhhcc-----------------------------------------cC--CCCceEEEEeCCCCCCHH
Confidence             1112222222211000                                         00  112457788887776532


Q ss_pred             CCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchHHH
Q psy9384         172 NKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEESLR  251 (978)
Q Consensus       172 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~  251 (978)
                      .        ...|.+++..    .|..+.+++++......+....+.+..+.+....    .+++..++...+...    
T Consensus       126 ~--------~~~L~~~le~----~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~----~~~~~~~l~~~~~~~----  185 (340)
T 1sxj_C          126 A--------QNALRRVIER----YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLP----QEAIERRIANVLVHE----  185 (340)
T ss_dssp             H--------HHHHHHHHHH----TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHTT----
T ss_pred             H--------HHHHHHHHhc----CCCCeEEEEEecCccccchhHHhhceeEeccCCC----HHHHHHHHHHHHHHc----
Confidence            1        2234444443    3445667777655433233333344455554433    367788877666421    


Q ss_pred             hhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         252 VHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       252 ~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                        .-...++..+.+.+.++|...-+...++.+
T Consensus       186 --~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~  215 (340)
T 1sxj_C          186 --KLKLSPNAEKALIELSNGDMRRVLNVLQSC  215 (340)
T ss_dssp             --TCCBCHHHHHHHHHHHTTCHHHHHHHTTTT
T ss_pred             --CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence              112334567788889999987766665554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=97.85  E-value=7.5e-05  Score=87.69  Aligned_cols=238  Identities=13%  Similarity=0.079  Sum_probs=121.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      +..+||+-.++++.+|+...+     +.+++.|+|++|.|||+|+..+....+-      +..-...+.+.-.  +  ..
T Consensus       128 k~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV------~~~Fd~gV~WVsV--s--~~  192 (1221)
T 1vt4_I          128 KYNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKV------QCKMDFKIFWLNL--K--NC  192 (1221)
T ss_dssp             CSCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHH------HHHHSSCEEEEEC--C--CS
T ss_pred             CCCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHH------HHhCCCcEEEEEe--C--CC
Confidence            445999999999999998632     4689999999999999999999743110      0001112222222  1  22


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      .++..+++.|+.+|....+.+...   .-.....          ....+.+...|...+...  ..+++.||+|-+++.+
T Consensus       193 ~d~~~IL~~Ll~lL~~i~~~~~~~---~d~~~~i----------p~~leeL~e~Lr~lL~~l--~~KRvLLVLDDVwd~e  257 (1221)
T 1vt4_I          193 NSPETVLEMLQKLLYQIDPNWTSR---SDHSSNI----------KLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAK  257 (1221)
T ss_dssp             SSHHHHHHHHHHHHHHHCSSSTTT---SCCCSSH----------HHHHHHHHHHHHHHHHHS--TTSSCEEEEESCCCHH
T ss_pred             CCHHHHHHHHHHHHhhcCcccccc---cccccCC----------CCCHHHHHHHHHHHHHhh--cCCCEEEEEeCcChHH
Confidence            346777777777654322211000   0000000          001122222333333111  3578999999998843


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccc--cccchhhhhHHHHHHHHHhcCc
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLD--DLRKSHVIRDMQQYILLRLASE  247 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~--~~~~~~~~~Di~~yi~~~l~~~  247 (978)
                                   .+..+.        ++.++|+|||.... . ..........++  +....-..+|-..++..++...
T Consensus       258 -------------qLe~f~--------pGSRILVTTRd~~V-a-~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~  314 (1221)
T 1vt4_I          258 -------------AWNAFN--------LSCKILLTTRFKQV-T-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR  314 (1221)
T ss_dssp             -------------HHHHHH--------SSCCEEEECSCSHH-H-HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC
T ss_pred             -------------HHHhhC--------CCeEEEEeccChHH-H-HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC
Confidence                         333321        34589999987653 2 111111122332  1000112356666666554321


Q ss_pred             hHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhccceeeccccc-cccchhHHHHHHHhhccc
Q psy9384         248 ESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNGLIILREIKD-IPGTLNGLYLWLSQRLLS  313 (978)
Q Consensus       248 ~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~~~~~~~l~~-lp~~l~~~y~~~~~~~~~  313 (978)
                                ..++..++   .+|.+|-++++...|+........+.. -...+..+.++.+.++..
T Consensus       315 ----------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~  368 (1221)
T 1vt4_I          315 ----------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP  368 (1221)
T ss_dssp             ----------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCT
T ss_pred             ----------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCH
Confidence                      12223333   679999999998888754211111111 123455555555555543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.76  E-value=0.00023  Score=75.99  Aligned_cols=51  Identities=22%  Similarity=0.227  Sum_probs=37.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..|.|++-..+.+..|+..... .....+.++|+|+||+|||+|+..+...+
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4588999888888888875200 01133468999999999999999997543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.74  E-value=0.0004  Score=73.04  Aligned_cols=25  Identities=36%  Similarity=0.646  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++|+|+||+|||+|+..+...+
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4678899999999999999998654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.73  E-value=0.00027  Score=75.05  Aligned_cols=191  Identities=17%  Similarity=0.113  Sum_probs=104.2

Q ss_pred             CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384           7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD   86 (978)
Q Consensus         7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~   86 (978)
                      ..-..|.|++-..+.+.+|+..-.. .......+.|+|+||+|||+++..+...+            ...+.+..|... 
T Consensus         9 ~~~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~------------~~~~~~~~~~~~-   74 (324)
T 1hqc_A            9 KTLDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL------------GVNLRVTSGPAI-   74 (324)
T ss_dssp             CSTTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH------------TCCEEEECTTTC-
T ss_pred             ccHHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh------------CCCEEEEecccc-
Confidence            3445689999888887777763100 00133568899999999999999997432            112222222111 


Q ss_pred             CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384          87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID  166 (978)
Q Consensus        87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD  166 (978)
                         ....                                             .+...+..   .+   ....+++||-+|
T Consensus        75 ---~~~~---------------------------------------------~l~~~l~~---~~---~~~~~l~lDEi~  100 (324)
T 1hqc_A           75 ---EKPG---------------------------------------------DLAAILAN---SL---EEGDILFIDEIH  100 (324)
T ss_dssp             ---CSHH---------------------------------------------HHHHHHTT---TC---CTTCEEEETTTT
T ss_pred             ---CChH---------------------------------------------HHHHHHHH---hc---cCCCEEEEECCc
Confidence               0000                                             00011110   01   234588899888


Q ss_pred             cccccCCCcCCCcchhhHHHHHHhccCC--------------CCCceeeeeeecccccchhhc-ccCc-cccccccccch
Q psy9384         167 ETHVTNKKIYSDKATCSIADLLARNHHL--------------FPPWLFLFCTVRRQSKSIKKM-FLGF-HKLSLDDLRKS  230 (978)
Q Consensus       167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~--------------~~~~~~~~~~sr~~~~~i~~~-~~~~-~~i~l~~~~~~  230 (978)
                      +....        ....|.+++....-.              .++++.+++++.+... +... ...+ ..+.+...+  
T Consensus       101 ~l~~~--------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~-~~~~l~~R~~~~i~l~~~~--  169 (324)
T 1hqc_A          101 RLSRQ--------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL-ITAPLLSRFGIVEHLEYYT--  169 (324)
T ss_dssp             SCCHH--------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS-CSCSTTTTCSCEEECCCCC--
T ss_pred             ccccc--------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCccc-CCHHHHhcccEEEecCCCC--
Confidence            87632        122344444432100              0124667777766542 3322 2233 245554333  


Q ss_pred             hhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         231 HVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       231 ~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                        .+|+..++...+...      ......+..+.|...+.|++..+.-.++.+.
T Consensus       170 --~~e~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~  215 (324)
T 1hqc_A          170 --PEELAQGVMRDARLL------GVRITEEAALEIGRRSRGTMRVAKRLFRRVR  215 (324)
T ss_dssp             --HHHHHHHHHHHHHTT------TCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence              367888887766532      1234456788889999999887777766654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.71  E-value=0.00035  Score=74.04  Aligned_cols=101  Identities=10%  Similarity=0.013  Sum_probs=58.3

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhh
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~  234 (978)
                      .+.-++|||..|....+.        ...|.+.+.    .-|+++.+|+++..+..-+....+.+..+.+...+    .+
T Consensus       107 ~~~kvviIdead~l~~~a--------~naLLk~lE----ep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~----~~  170 (334)
T 1a5t_A          107 GGAKVVWVTDAALLTDAA--------ANALLKTLE----EPPAETWFFLATREPERLLATLRSRCRLHYLAPPP----EQ  170 (334)
T ss_dssp             SSCEEEEESCGGGBCHHH--------HHHHHHHHT----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HH
T ss_pred             CCcEEEEECchhhcCHHH--------HHHHHHHhc----CCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCC----HH
Confidence            345688899888876321        123444443    23456666666654432222333445556665433    47


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG  282 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~  282 (978)
                      ++..|+..+..           ..++..+.++..++|...-|...++.
T Consensus       171 ~~~~~L~~~~~-----------~~~~~~~~l~~~s~G~~r~a~~~l~~  207 (334)
T 1a5t_A          171 YAVTWLSREVT-----------MSQDALLAALRLSAGSPGAALALFQG  207 (334)
T ss_dssp             HHHHHHHHHCC-----------CCHHHHHHHHHHTTTCHHHHHHTTSS
T ss_pred             HHHHHHHHhcC-----------CCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence            88889887751           12344567788888888776555543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.66  E-value=0.00066  Score=72.64  Aligned_cols=51  Identities=25%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             CcccccccchHHHHHHHhc----CCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          10 KKFFCREWAFVKLVHCLES----KTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~----~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.|.+-..+.+.+++..    +.-.  .....+.++|+|+||+|||+|+..+...
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            3467777777777766642    0000  0113467899999999999999999744

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.64  E-value=0.00052  Score=72.39  Aligned_cols=50  Identities=24%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             cccccccchHHHHHHHhcC----C--CCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESK----T--NSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~----~--~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|.+-..+.+.+++..+    .  .......+.++|+|+||+|||+|+..+...
T Consensus        19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3556666666666665200    0  001113456899999999999999999743

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.60  E-value=0.00041  Score=70.97  Aligned_cols=210  Identities=13%  Similarity=0.131  Sum_probs=102.2

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCcc
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATF   90 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~   90 (978)
                      .|.|++-.+.++.+.+..-    ......++|+|+||+|||+++..+...+..         ....+.+.-|..-     
T Consensus         7 ~~ig~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKt~la~~i~~~~~~---------~~~~~~~v~~~~~-----   68 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHL----APLDKPVLIIGERGTGKELIASRLHYLSSR---------WQGPFISLNCAAL-----   68 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHH----TTSCSCEEEECCTTSCHHHHHHHHHHTSTT---------TTSCEEEEEGGGS-----
T ss_pred             cceeCCHHHHHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHHHhcCc---------cCCCeEEEecCCC-----
Confidence            4677777666655554431    013356889999999999999999866532         1223444444421     


Q ss_pred             CHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccccc
Q psy9384          91 SVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETHV  170 (978)
Q Consensus        91 ~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~~  170 (978)
                       ....+.+   .|....+.       .+.... ..       ..   ..+        ..    ...-+++||-+|....
T Consensus        69 -~~~~~~~---~l~g~~~~-------~~~g~~-~~-------~~---~~l--------~~----a~~~~l~lDEi~~l~~  114 (265)
T 2bjv_A           69 -NENLLDS---ELFGHEAG-------AFTGAQ-KR-------HP---GRF--------ER----ADGGTLFLDELATAPM  114 (265)
T ss_dssp             -CHHHHHH---HHHCCC-----------------C-------CC---CHH--------HH----TTTSEEEEESGGGSCH
T ss_pred             -ChhHHHH---HhcCCccc-------cccccc-cc-------cc---chh--------hh----cCCcEEEEechHhcCH
Confidence             1122222   22222110       000000 00       00   001        01    1124889999998864


Q ss_pred             cCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccch----------hhcccCccccccccccchhhh
Q psy9384         171 TNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSI----------KKMFLGFHKLSLDDLRKSHVI  233 (978)
Q Consensus       171 ~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i----------~~~~~~~~~i~l~~~~~~~~~  233 (978)
                      +        ....|.+++....       ...+..+++|++|.+.....          ..++.. -.+.+...+.  ..
T Consensus       115 ~--------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~--R~  183 (265)
T 2bjv_A          115 M--------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRE--RE  183 (265)
T ss_dssp             H--------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGG--CH
T ss_pred             H--------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhh--hh
Confidence            2        1223444554321       01234678888888754322          122211 1344433222  23


Q ss_pred             hHHHHHHHHHhcCchHHHhhc--CcChHHHHHHHHhhc-hhhHHHHHHHHhhh
Q psy9384         234 RDMQQYILLRLASEESLRVHM--NRDTAEMLNQLHIKS-NGCFLYLERVLDGI  283 (978)
Q Consensus       234 ~Di~~yi~~~l~~~~~~~~~~--~~~~~~i~~~l~~~a-~g~flw~~~~~~~l  283 (978)
                      +||..++.+.+..........  ....++..+.|.... .|+..-+.-+++.+
T Consensus       184 ~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~  236 (265)
T 2bjv_A          184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS  236 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            688888877766433222211  134456667776554 77777666666654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.57  E-value=0.0052  Score=62.56  Aligned_cols=51  Identities=29%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             CcccccccchHHHH---HHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          10 KKFFCREWAFVKLV---HCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        10 ~~f~~r~w~~~~~~---~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.|.+-+.+.++   .|+..+...   .....+.++|+|+||+|||+++..+...
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34666666665443   444432100   0123456889999999999999999744

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.57  E-value=0.0012  Score=68.97  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=35.6

Q ss_pred             CcccccccchHHHHHHHhcCCC------CCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTN------SKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~------~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.|.+-..+.+.+++..+..      ......+.++|+|+||+|||+++..+...+
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4567787777777777643100      001134678999999999999999998543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.53  E-value=0.00026  Score=74.56  Aligned_cols=111  Identities=12%  Similarity=0.084  Sum_probs=57.3

Q ss_pred             EEEEEeccccccccCCC-cCCCcchhhHHHHHHhccCCCCCceeeeeeecccc--------cchhhcccCcccccccccc
Q psy9384         158 YFILVDSIDETHVTNKK-IYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS--------KSIKKMFLGFHKLSLDDLR  228 (978)
Q Consensus       158 ~~iviDaLDE~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~--------~~i~~~~~~~~~i~l~~~~  228 (978)
                      -+++||-+|.......+ ....+....|.+++...    +.++.+|+++.+..        +.+..+|.  ..+.+...+
T Consensus       132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~  205 (309)
T 3syl_A          132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQSNPGFRSRIA--HHIEFPDYS  205 (309)
T ss_dssp             SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHHHSTTHHHHEE--EEEEECCCC
T ss_pred             CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHhhCHHHHHhCC--eEEEcCCcC
Confidence            38999999977421100 11222344555555533    34667788775532        23444442  345554433


Q ss_pred             chhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhh--------chhhHHHHHHHHhhhh
Q psy9384         229 KSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIK--------SNGCFLYLERVLDGIS  284 (978)
Q Consensus       229 ~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~--------a~g~flw~~~~~~~l~  284 (978)
                          .+|+..++...+....      .....+..+.+.+.        ..|+...+.-+++.+.
T Consensus       206 ----~~~~~~il~~~l~~~~------~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~  259 (309)
T 3syl_A          206 ----DEELFEIAGHMLDDQN------YQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR  259 (309)
T ss_dssp             ----HHHHHHHHHHHHHHTT------CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence                3778888777666321      12223344444443        3366666666655543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.51  E-value=0.00075  Score=73.35  Aligned_cols=50  Identities=24%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             cccccccchHHHHHHHhcCCCC------CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNS------KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~------~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|++-..+.+.+++..+...      .....+-++|+|+||+|||+|+..+...
T Consensus       116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            4667777777777776321000      0013467899999999999999999744

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0011  Score=71.42  Aligned_cols=25  Identities=40%  Similarity=0.668  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+.++|+||||||.|++.+..+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4567889999999999999999844

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.45  E-value=0.00081  Score=74.17  Aligned_cols=50  Identities=26%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             ccccccchHHHHHHHhc----CCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          12 FFCREWAFVKLVHCLES----KTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~----~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|.+-+.+.+.+++..    +...  .....+.++|+|+||+|||+|+..+...+
T Consensus       136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            45555555566665521    0000  01134678899999999999999998554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00092  Score=72.11  Aligned_cols=25  Identities=40%  Similarity=0.671  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+.|+|+||||||.|++.+..+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4567889999999999999999844

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.43  E-value=0.0003  Score=64.07  Aligned_cols=47  Identities=15%  Similarity=0.175  Sum_probs=33.6

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .|.|++-.++++.+++..-    .....-++|+|+||+|||+++..+....
T Consensus         2 ~iiG~s~~~~~~~~~~~~~----a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQL----SETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHH----TTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHH----hCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            4678877777776666531    1133458899999999999999998654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.40  E-value=0.0019  Score=68.82  Aligned_cols=50  Identities=24%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             cccccccchHHHHHHHhcC----CC--CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESK----TN--SKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~----~~--~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|.+-..+.+.+++..+    ..  ......+-++|+|+||+|||+|+..+...
T Consensus        52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence            3566666666666665210    00  01112345788999999999999999844

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.39  E-value=0.00072  Score=70.09  Aligned_cols=52  Identities=23%  Similarity=0.281  Sum_probs=34.5

Q ss_pred             CcccccccchHHHHHHHhcCCCC-------CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNS-------KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~-------~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.|.+-..+++.+++..+-..       .....+.++|+|+||+|||+|+..+...+
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            34667777777666665431000       01144568999999999999999998554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.38  E-value=0.0016  Score=68.93  Aligned_cols=38  Identities=24%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .....++..+    ....+.++|+|+||+|||+|+..+...+
T Consensus        24 ~~~~~~~~~~----~~~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           24 EVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             HHHHHHHHTT----TTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhCc----CCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4567777753    1134679999999999999999998543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.0013  Score=69.65  Aligned_cols=25  Identities=32%  Similarity=0.683  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+.++|+||||||.|++.+..+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            4466889999999999999999843

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.35  E-value=0.001  Score=69.11  Aligned_cols=213  Identities=14%  Similarity=0.136  Sum_probs=108.2

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..+.|++-.++++.+.+..-    ......++|+|+||+|||+++..+......         ....+.+.-|..     
T Consensus         2 ~~iig~s~~~~~~~~~~~~~----a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~---------~~~~~v~v~~~~-----   63 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMV----APSDATVLIHGDSGTGKELVARALHACSAR---------SDRPLVTLNCAA-----   63 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHH----CSTTSCEEEESCTTSCHHHHHHHHHHHSSC---------SSSCCCEEECSS-----
T ss_pred             CCcEECCHHHHHHHHHHHHH----hCCCCcEEEECCCCchHHHHHHHHHHhCcc---------cCCCeEEEeCCC-----
Confidence            35778877777665555541    113456889999999999999999854321         122233333331     


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                       .+..++.+   .|....+..       +.... ..       ..   ..+.        ..    ..-+++||-+|+..
T Consensus        64 -~~~~l~~~---~lfg~~~g~-------~tg~~-~~-------~~---g~~~--------~a----~~g~L~LDEi~~l~  109 (304)
T 1ojl_A           64 -LNESLLES---ELFGHEKGA-------FTGAD-KR-------RE---GRFV--------EA----DGGTLFLDEIGDIS  109 (304)
T ss_dssp             -CCHHHHHH---HHTCCCSSC-------CC----CC-------CC---CHHH--------HH----TTSEEEEESCTTCC
T ss_pred             -CChHHHHH---HhcCccccc-------cCchh-hh-------hc---CHHH--------hc----CCCEEEEeccccCC
Confidence             12233333   222221110       00000 00       00   0110        00    12378899999886


Q ss_pred             ccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hccc-----C--ccccccccccchhhh
Q psy9384         170 VTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFL-----G--FHKLSLDDLRKSHVI  233 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~-----~--~~~i~l~~~~~~~~~  233 (978)
                      ..        ....|.+++....       ...+..+++|++|.++.....  ..|+     .  .-.+.+....  +..
T Consensus       110 ~~--------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~--eR~  179 (304)
T 1ojl_A          110 PL--------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLR--QRR  179 (304)
T ss_dssp             HH--------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSG--GGG
T ss_pred             HH--------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHH--HhH
Confidence            32        1223444444321       112356889999887643221  1121     1  1223443322  235


Q ss_pred             hHHHHHHHHHhcCchHHHh-hcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384         234 RDMQQYILLRLASEESLRV-HMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS  284 (978)
Q Consensus       234 ~Di~~yi~~~l~~~~~~~~-~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~  284 (978)
                      +||..++.+-+........ ......++..+.|...+ .|+..-+.-+++.+.
T Consensus       180 edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~  232 (304)
T 1ojl_A          180 EDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAV  232 (304)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            7898888877764322211 12234567778888876 888877777766653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.31  E-value=0.002  Score=70.94  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=28.3

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .....+...+     +....++|+|+||+|||+|+..+...+
T Consensus       118 ~~~~~~a~~~-----~~~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          118 HAALEVAKHP-----GRYNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             HHHHHHHHST-----TSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-----CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3467777753     125679999999999999999998543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.30  E-value=0.00089  Score=80.75  Aligned_cols=46  Identities=20%  Similarity=0.409  Sum_probs=36.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..|+||+-.+.++.+++...      ..+-++|+|+||+|||+|+..+...+
T Consensus       170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            45789998888888888753      33457899999999999999998543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.0025  Score=67.68  Aligned_cols=25  Identities=36%  Similarity=0.668  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+.|+|+||||||.|+..+..+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHH
Confidence            4567899999999999999999844

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.0013  Score=70.89  Aligned_cols=25  Identities=40%  Similarity=0.639  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+.++|+||||||.|++.+..+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            4567889999999999999999844

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.21  E-value=0.0023  Score=65.59  Aligned_cols=25  Identities=36%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.++|+|+||+|||+|+..+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4567899999999999999999843

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0024  Score=68.62  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.++|+|+||||||.|+..+..+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4567889999999999999999844

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.11  E-value=0.0056  Score=63.64  Aligned_cols=26  Identities=42%  Similarity=0.622  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.++|+|+||+|||+|+..+...+
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHh
Confidence            45678999999999999999998543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.99  E-value=0.0017  Score=68.32  Aligned_cols=52  Identities=23%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             CcccccccchHHHHHHHhcCCC--CCCC-CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTN--SKPG-NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~--~~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.|.+-..+.+...+.....  ..+. ..+.++|+|+||+|||+++..+...+
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3567887777766555543100  0111 23479999999999999999998554

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.90  E-value=0.0016  Score=63.38  Aligned_cols=42  Identities=21%  Similarity=0.117  Sum_probs=30.2

Q ss_pred             chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++...+|+....  ....++.++|+|+||+|||+|+..+...+
T Consensus        37 ~~~~~~~~~~~~~--~~~~~~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           37 AIRFAERFVAEYE--PGKKMKGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             HHHHHHHHHHHCC--SSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--hccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3455678887641  11122679999999999999999998554

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.79  E-value=0.0018  Score=73.33  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ....+.|.|+||+|||+|+..+...+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            45689999999999999999997443

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.71  E-value=0.0042  Score=68.88  Aligned_cols=49  Identities=18%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             ccccccchHHHHHHHhcCCC-------CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          12 FFCREWAFVKLVHCLESKTN-------SKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~-------~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.+-..+++.+++...-.       ......+-++|+|+||+|||+++..+...
T Consensus       206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence            56666666666666543100       00124456889999999999999999744

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.71  E-value=0.0033  Score=69.86  Aligned_cols=46  Identities=20%  Similarity=0.432  Sum_probs=37.1

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..++||+-..+.+.+++...      ..+-++|+|+||+|||+++..+...+
T Consensus       180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45889999999999998763      23446799999999999999998553

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.67  E-value=0.005  Score=64.57  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=32.1

Q ss_pred             cccccccchHHHHHHHhcC--C-CC-----CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          11 KFFCREWAFVKLVHCLESK--T-NS-----KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~--~-~~-----~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.|++-..+.+...+...  + ..     .....+-++|+|+||+|||+++..+...+
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4567766666655544320  0 00     00123568899999999999999998543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.64  E-value=0.0031  Score=64.46  Aligned_cols=51  Identities=27%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             CcccccccchHHHHHHHh---cCCC---CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          10 KKFFCREWAFVKLVHCLE---SKTN---SKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~---~~~~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.|.+-..+.+.+++.   .+..   ......+.++|+|+||+|||+|+..+...
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence            457788777765544433   1000   00002234779999999999999999843

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.44  E-value=0.0069  Score=62.55  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+.|+|+||+|||+|+..+...+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678899999999999999998543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.42  E-value=0.057  Score=54.48  Aligned_cols=23  Identities=48%  Similarity=0.768  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +-+.|+|+||+|||+|+..+...
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45789999999999999999743

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.41  E-value=0.0085  Score=68.99  Aligned_cols=43  Identities=23%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.|.+.+++.+...+..        ...+.|.|+||+|||+|+..+...+.
T Consensus        43 i~G~~~~l~~l~~~i~~--------g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           43 VIGQEHAVEVIKTAANQ--------KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCSCHHHHHHHHHHHHT--------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             EECchhhHhhccccccC--------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            46777777777777774        25899999999999999999987664

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.40  E-value=0.0036  Score=65.08  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++...+|+...   ..+....++|+|+||+|||+|+..+...+
T Consensus       136 ~~~~~~~~i~~~---~~~~~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          136 AFSAILDFVEQY---PSAEQKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             HHHHHHHHHHHC---SCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---cccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            344567888863   11124679999999999999999998543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.30  E-value=0.0099  Score=57.59  Aligned_cols=27  Identities=37%  Similarity=0.710  Sum_probs=23.2

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          34 PGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        34 ~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.++++|-|+|||||||+++.++++
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            345679999999999999999999844

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.22  E-value=0.018  Score=67.18  Aligned_cols=26  Identities=31%  Similarity=0.615  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+.|+|+||||||+|++.+...+
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45678899999999999999998654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.16  E-value=0.037  Score=65.92  Aligned_cols=46  Identities=20%  Similarity=0.432  Sum_probs=36.1

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.||+-.++++.+++...      ...-+.|+|+||+|||+++..+...+
T Consensus       186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            35788888888888888753      33457899999999999999998543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.08  E-value=0.011  Score=60.29  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhc
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .++..|+|+||+|||+|+..+..
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34668999999999999999973

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.03  E-value=0.0032  Score=59.80  Aligned_cols=44  Identities=23%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++..++...+|+++-   ....+..++|+|+||+|||+|+..+...+
T Consensus        19 ~~~~~~~~~~~~~~~---~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           19 QNRALLTIRVFVHNF---NPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             HHHHHHHHHHHHHSC---CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc---cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            345555667777653   22245789999999999999999998543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.03  E-value=0.0041  Score=58.61  Aligned_cols=37  Identities=14%  Similarity=0.146  Sum_probs=29.3

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.++.|+.+-     ...+.++++|+||+|||+++..++..+
T Consensus        46 ~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           46 GALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678898852     134569999999999999999998554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.97  E-value=0.037  Score=60.71  Aligned_cols=22  Identities=41%  Similarity=0.780  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhc
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +-++|+|+||+|||+|+..+..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3477999999999999999974

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.84  E-value=0.054  Score=55.88  Aligned_cols=36  Identities=19%  Similarity=0.081  Sum_probs=27.8

Q ss_pred             chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.+.++..++..      ....+.++|+||+|||+++..+..
T Consensus         5 ~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~   40 (305)
T 2gno_A            5 QLETLKRIIEKS------EGISILINGEDLSYPREVSLELPE   40 (305)
T ss_dssp             HHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345567777753      246788999999999999999874

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.80  E-value=0.003  Score=57.14  Aligned_cols=47  Identities=13%  Similarity=0.079  Sum_probs=30.0

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.|++-.++++.+.+..-    .....-++|+|+||+|||+++..+...
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~----~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAA----AKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHH----HTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             cCceeCCHHHHHHHHHHHHH----hCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            45678877776655554431    002345789999999999999999744

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.78  E-value=0.0073  Score=59.99  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..|++..    .+..+.+||+|+||+|||.++..++..
T Consensus        93 l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           93 FLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            68898862    234567999999999999999999843

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.70  E-value=0.019  Score=68.29  Aligned_cols=46  Identities=20%  Similarity=0.432  Sum_probs=37.2

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.||+-..+++..++...      ..+-++|+|+||+|||+++..+...+
T Consensus       180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45889999999999998864      22346799999999999999998554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.65  E-value=0.1  Score=53.03  Aligned_cols=21  Identities=43%  Similarity=0.694  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|+|+||||||+|++.+...
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999999843

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.59  E-value=0.005  Score=58.28  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++||+|.|||||||++..+.+.+
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            589999999999999999998665

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.52  E-value=0.062  Score=52.01  Aligned_cols=27  Identities=33%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            446899999999999999999986554

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.33  E-value=0.037  Score=64.61  Aligned_cols=25  Identities=44%  Similarity=0.659  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+-+.++|+||||||.|++.+..++
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~  535 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANEC  535 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred             CceEEEecCCCCCchHHHHHHHHHh
Confidence            3457799999999999999998554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.12  E-value=0.057  Score=64.18  Aligned_cols=51  Identities=20%  Similarity=0.354  Sum_probs=31.1

Q ss_pred             cccccccchHHHHHHHhcCCCC--CCC-CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNS--KPG-NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~--~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.|.+-..+.+.+.+......  .++ ..+.++|+|+||+|||.++..+...+
T Consensus       492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455555555554444432100  111 11259999999999999999998554

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.09  E-value=0.083  Score=52.80  Aligned_cols=27  Identities=30%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456899999999999999999985543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.95  E-value=0.0076  Score=56.67  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +++|.|.|||||||++..+.+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999744

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.92  E-value=0.013  Score=56.52  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...+++|.|++|||||||++.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999973

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.90  E-value=0.01  Score=55.77  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+++|.|+|||||||+++.+...
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999744

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.79  E-value=0.014  Score=55.11  Aligned_cols=20  Identities=45%  Similarity=0.644  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHH
Q psy9384          38 GGALIIGGPGSGKTTLCKEI   57 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~i   57 (978)
                      .+++|.|+|||||||++..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.79  E-value=0.0092  Score=55.78  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.++|+|.|||||||+++.+.+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999744

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.79  E-value=0.015  Score=55.71  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+++|.|+||||||||++.+...
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.71  E-value=0.015  Score=55.08  Aligned_cols=22  Identities=45%  Similarity=0.662  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhc
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+++|.|.|||||||++..+.+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999974

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.70  E-value=0.013  Score=61.89  Aligned_cols=50  Identities=32%  Similarity=0.337  Sum_probs=34.5

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..|.|++.+++.+..++..... .......+.|+|+||+|||||+..+...
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4567888888877766653100 0012256899999999999999999844

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.61  E-value=0.011  Score=56.83  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+++|.|.|||||||++..+.+.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999999744

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.61  E-value=0.1  Score=57.64  Aligned_cols=22  Identities=41%  Similarity=0.780  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      -+.|+|+||+|||+|+..+...
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999844

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.60  E-value=0.075  Score=55.31  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQF  103 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL  103 (978)
                      .+.+..|.|.||+|||+++..++.+...         ....+.||-+.      .+...+..-++.+.
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g~~vl~~slE------~s~~~l~~R~~~~~  119 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSD---------NDDVVNLHSLE------MGKKENIKRLIVTA  119 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHT---------TTCEEEEEESS------SCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEECC------CCHHHHHHHHHHHH
Confidence            4568889999999999999998854321         12456655432      35556666655543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.57  E-value=0.011  Score=56.19  Aligned_cols=25  Identities=24%  Similarity=0.094  Sum_probs=17.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+++|+|.|||||||++..+.+.+
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999998554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.57  E-value=0.1  Score=51.41  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            457899999999999999999875543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.56  E-value=0.02  Score=53.83  Aligned_cols=23  Identities=26%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      ...+++|.|.|||||||+++.+.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVA   29 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            34689999999999999999987

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.56  E-value=0.099  Score=51.15  Aligned_cols=26  Identities=35%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||++.+.--+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999987544

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.51  E-value=0.011  Score=56.18  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+++|+|.|||||||+++.+.+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999743

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.47  E-value=0.021  Score=55.26  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+++|.|.|||||||++..+.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999744

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.47  E-value=0.027  Score=54.31  Aligned_cols=44  Identities=23%  Similarity=0.037  Sum_probs=32.0

Q ss_pred             cccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          15 REWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      |+-+++++-+++...   ......++.|.|++||||||++..+...+
T Consensus         3 ~~~~~~~l~~~~~~~---~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            3 LRDRIDFLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh---ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            334556677777653   22355689999999999999999998543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.44  E-value=0.076  Score=55.22  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             ccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHH
Q psy9384          16 EWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNF   95 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~   95 (978)
                      .+=|..+.+.+.+     -..+.+..|.|.||+|||+++..++.+...         .+..|+||-.  .    -+...+
T Consensus        30 ~TG~~~LD~~~gG-----l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~~Vl~fSl--E----ms~~ql   89 (338)
T 4a1f_A           30 PTGFVQLDNYTSG-----FNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDRGVAVFSL--E----MSAEQL   89 (338)
T ss_dssp             CCSCHHHHHHHCS-----BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTCEEEEEES--S----SCHHHH
T ss_pred             cCCChHHHHHhcC-----CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeC--C----CCHHHH
Confidence            3445666666542     124568889999999999999999855321         2455665442  2    245666


Q ss_pred             HHHHHHHHhc
Q psy9384          96 IQSLVEQFSS  105 (978)
Q Consensus        96 l~sl~~QL~~  105 (978)
                      +.-++.+...
T Consensus        90 ~~Rlls~~~~   99 (338)
T 4a1f_A           90 ALRALSDLTS   99 (338)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            6666655543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.42  E-value=0.011  Score=56.67  Aligned_cols=23  Identities=26%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++|.|.|||||||++..+.+++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998554

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.42  E-value=0.084  Score=51.24  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      -|-|.|+|||||||+++.+.+.
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999844

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.39  E-value=0.013  Score=56.10  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+++|.|.|||||||++..+.+++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.35  E-value=0.16  Score=53.28  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||++.+.--+
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            45789999999999999999887544

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.33  E-value=0.018  Score=55.70  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+++|.|+||||||||+..+.+.+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45789999999999999999998665

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.32  E-value=0.016  Score=55.98  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+++|.|.|||||||++..+.+.
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999744

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.31  E-value=0.023  Score=55.04  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.+|.|+|||||||++..+.+.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999998765

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.31  E-value=0.015  Score=56.10  Aligned_cols=25  Identities=32%  Similarity=0.292  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+++|.|.|||||||++..+.+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999844

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.30  E-value=0.022  Score=54.92  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++||.|.+||||||++..+...+
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.26  E-value=0.11  Score=53.04  Aligned_cols=21  Identities=38%  Similarity=0.713  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|+|+||+|||+|+..+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            889999999999999999844

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.25  E-value=0.015  Score=55.07  Aligned_cols=25  Identities=44%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+++|+|.|||||||++..+.+.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999744

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.24  E-value=0.015  Score=55.39  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++|.|.|||||||++..+.+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999744

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.23  E-value=0.014  Score=54.80  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+++|+|.|||||||++..+.+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999743

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.17  E-value=0.016  Score=56.71  Aligned_cols=26  Identities=27%  Similarity=0.088  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+++|+|.|||||||++..+.+++
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.13  E-value=0.022  Score=51.67  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ....+.|.|++|+|||+|+..+...+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            44689999999999999999998543

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.08  E-value=0.023  Score=54.99  Aligned_cols=26  Identities=35%  Similarity=0.705  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+.+|.|.|||||||+++.+.+.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            44578999999999999999998543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.06  E-value=0.015  Score=55.33  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+|.|.|||||||+++.+.+.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999743

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.05  E-value=0.016  Score=54.52  Aligned_cols=22  Identities=36%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+||.|.|||||||++..+.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999743

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.02  E-value=0.019  Score=60.69  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.|++-+.+.+..++...        +-++|+|+||+|||+|+..+...+
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHh
Confidence            35678887777777776642        468999999999999999998554

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.01  E-value=0.018  Score=55.30  Aligned_cols=25  Identities=44%  Similarity=0.825  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+++|.|.|||||||+++.+.+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999744

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.00  E-value=0.03  Score=53.12  Aligned_cols=25  Identities=36%  Similarity=0.567  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....+.|+|.|||||||+++.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4467999999999999999999744

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.98  E-value=0.018  Score=56.28  Aligned_cols=25  Identities=20%  Similarity=-0.029  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+++|.|.|||||||++..+.+++.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999986653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.98  E-value=0.023  Score=58.25  Aligned_cols=26  Identities=38%  Similarity=0.492  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+++|.|.|||||||+++.+.+.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34678899999999999999998543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.93  E-value=0.018  Score=55.38  Aligned_cols=23  Identities=43%  Similarity=0.765  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+|.|.|||||||++..+.+.
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999744

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.90  E-value=0.019  Score=57.83  Aligned_cols=26  Identities=27%  Similarity=0.221  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++||.|.|||||||++..+...+
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            44678999999999999999998554

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=93.85  E-value=0.041  Score=60.89  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=33.7

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.++|++-+.+.....+..        ++-++|+|+||+|||+|+..+...+
T Consensus        22 ~~ivGq~~~i~~l~~al~~--------~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHH--------TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hhhHHHHHHHHHHHHHHhc--------CCeeEeecCchHHHHHHHHHHHHHH
Confidence            3466777777766665553        2468899999999999999998655

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.81  E-value=0.025  Score=53.87  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.+|.|.|||||||++..+...+
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998554

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.81  E-value=0.019  Score=55.18  Aligned_cols=23  Identities=35%  Similarity=0.187  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++|+|.|||||||++..+.+++
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.78  E-value=0.034  Score=53.93  Aligned_cols=26  Identities=35%  Similarity=0.166  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+++|.|+|||||||++..+...+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45688999999999999999998664

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.76  E-value=0.16  Score=51.28  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||++.+.--+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45689999999999999999997554

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.76  E-value=0.02  Score=53.40  Aligned_cols=22  Identities=27%  Similarity=0.215  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+|+|.|||||||+++.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999743

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.74  E-value=0.022  Score=55.77  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+++|+|.|||||||++..+.+++
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998554

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.73  E-value=0.023  Score=54.44  Aligned_cols=25  Identities=44%  Similarity=0.796  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+++|.|.|||||||++..+.+.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468899999999999999999743

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.71  E-value=0.023  Score=55.58  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++|+|+|||||||++..+.+.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999997543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.64  E-value=0.037  Score=54.62  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+++|.|+|||||||+++.+...
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999743

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.63  E-value=0.039  Score=52.05  Aligned_cols=26  Identities=12%  Similarity=0.336  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|++|||||||+..+...+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998544

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.61  E-value=0.024  Score=55.69  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...++|.|.|||||||+++.+.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357888999999999999999854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.59  E-value=0.023  Score=54.84  Aligned_cols=24  Identities=50%  Similarity=0.786  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+|.|.|||||||+++.+.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999844

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.55  E-value=0.022  Score=55.81  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++|+|+|||||||++..+.+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999744

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.53  E-value=0.094  Score=63.13  Aligned_cols=51  Identities=22%  Similarity=0.349  Sum_probs=32.5

Q ss_pred             cccccccchHHHHHHHhcCCC--CCCC-CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTN--SKPG-NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~--~~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++|.+-..+.+...+.....  ++++ ..+.++|+|+||+|||+++..+...+
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            356776666665555543100  0111 12468899999999999999998554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.53  E-value=0.14  Score=53.95  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            456899999999999999999985543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.53  E-value=0.039  Score=53.50  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|++||||||++..+...+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34688999999999999999998765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.50  E-value=0.025  Score=56.42  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....++|+|+|||||||+++.+.++
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999844

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.49  E-value=0.044  Score=53.17  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|++|+|||||+..+...+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            45689999999999999999998665

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=93.43  E-value=0.04  Score=51.97  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+++|+|.+||||||+++.+.+.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999997543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.42  E-value=0.03  Score=55.26  Aligned_cols=25  Identities=40%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+++|.|.|||||||++..+.+.+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999998544

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.42  E-value=0.035  Score=56.04  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+++|.|.|||||||++..+.+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999999854

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.40  E-value=0.063  Score=53.89  Aligned_cols=24  Identities=33%  Similarity=0.758  Sum_probs=20.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+.+..|.|.||+|||+++-.++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            456888999999999999998763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.31  E-value=0.036  Score=52.89  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhc
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+++|.|++|||||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999973

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.27  E-value=0.032  Score=53.70  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +++|-|+|||||+|+++.++++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999999844

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=93.23  E-value=0.048  Score=52.75  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++.|.|++|||||||+..+...
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3468999999999999999999744

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.11  E-value=0.27  Score=52.01  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence            456899999999999999999985543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.10  E-value=0.067  Score=54.67  Aligned_cols=41  Identities=17%  Similarity=0.037  Sum_probs=30.0

Q ss_pred             cchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          17 WAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        17 w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+++.+|...    ..+...+..|.|++|||||||+..+...+
T Consensus        15 ~l~~~i~~~~~~----~~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           15 FLDKYIPEWFET----GNKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             HHHHHHHHHHTT----TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhc----cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345566777543    22345678899999999999999988655

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=93.09  E-value=0.061  Score=52.17  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+++.+.+...    ...+.++.|.|++|||||||++.+...+
T Consensus         8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A            8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34454555431    2255689999999999999999997443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.08  E-value=0.044  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      .+.++.|.|++|||||||++.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc
Confidence            45689999999999999999865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.05  E-value=0.032  Score=54.91  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+.+|.|.|||||||+++.+.+.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999998543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=93.00  E-value=0.78  Score=61.06  Aligned_cols=88  Identities=9%  Similarity=0.069  Sum_probs=46.2

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhcc--C-CCC-----Cceeeeeeecccc----cchhhcc-cCccc
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNH--H-LFP-----PWLFLFCTVRRQS----KSIKKMF-LGFHK  221 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~--~-~~~-----~~~~~~~~sr~~~----~~i~~~~-~~~~~  221 (978)
                      ..+.+++||-+|=...+.  .-....++.|++++....  . ...     .++.++.++.|+.    ..+..+| +.+..
T Consensus      1335 gk~~VlFiDEinmp~~d~--yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A         1335 IKNLVLFCDEINLPKLDK--YGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp             SSCEEEEEETTTCSCCCS--SSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred             CceEEEEecccccccccc--cCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Confidence            456899999877543221  012235667777765321  0 000     2466777777763    2344443 45556


Q ss_pred             cccccccchhhhhHHHHHHHHHh
Q psy9384         222 LSLDDLRKSHVIRDMQQYILLRL  244 (978)
Q Consensus       222 i~l~~~~~~~~~~Di~~yi~~~l  244 (978)
                      +.+...+.+....-...++...+
T Consensus      1413 i~i~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A         1413 LYLGYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp             EECCCCTTTHHHHHHHHHHHHHT
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHh
Confidence            66655444444445555555444

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.98  E-value=0.25  Score=56.17  Aligned_cols=61  Identities=18%  Similarity=0.083  Sum_probs=38.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL   99 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl   99 (978)
                      .+.++.|.|+.|+|||||++.+.--+...+..- .  ....++|.+-+.......++...+...
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I-~--~~~~i~~v~Q~~~~~~~~tv~e~~~~~  441 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-E--WDLTVAYKPQYIKAEYEGTVYELLSKI  441 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC-C--CCCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-E--EeeEEEEEecCccCCCCCcHHHHHHhh
Confidence            456899999999999999999986554322111 0  023478777544333445666666543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=92.94  E-value=0.37  Score=50.45  Aligned_cols=27  Identities=30%  Similarity=0.306  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456899999999999999999875543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=92.94  E-value=0.034  Score=54.14  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+++|.|.|||||||++..+.+.+
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999997543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.89  E-value=0.22  Score=55.95  Aligned_cols=61  Identities=18%  Similarity=0.081  Sum_probs=38.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL   99 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl   99 (978)
                      .+.++.|.|+.|||||||++.+.--+...+..-.   ....++|++-+.......++...+...
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~---~~~~i~~v~Q~~~~~~~~tv~~~~~~~  371 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE---WDLTVAYKPQYIKADYEGTVYELLSKI  371 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC---CCCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECceEEEEecCCcCCCCCcHHHHHHhh
Confidence            3568999999999999999999865543211110   023477777554333445666665543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.89  E-value=0.042  Score=54.10  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+++|.|+|||||||++..+.+.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            456889999999999999999986653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=92.83  E-value=0.039  Score=54.71  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....++|.|.|||||||+++.+.+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999999844

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=92.82  E-value=0.25  Score=54.30  Aligned_cols=55  Identities=13%  Similarity=0.041  Sum_probs=35.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS  104 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~  104 (978)
                      .+.+..|.|.||+|||+++..++.+...        ..+..++||-+  .    .+...+..-++.+..
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--------~~g~~vl~~sl--E----~~~~~l~~R~~~~~~  253 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAAL--------KEGVGVGIYSL--E----MPAAQLTLRMMCSEA  253 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHH--------TTCCCEEEEES--S----SCHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH--------hCCCeEEEEEC--C----CCHHHHHHHHHHHHc
Confidence            4568889999999999999999854321        01345666443  2    245566666555544

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.73  E-value=0.035  Score=53.72  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..|.|.|||||||+++.+.+++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            57899999999999999998554

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.69  E-value=0.036  Score=54.47  Aligned_cols=22  Identities=36%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +++|.|.|||||||+++.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999744

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=92.55  E-value=0.05  Score=54.69  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...++.|+|+|||||||+++.+.+.+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345788999999999999999986553

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=92.50  E-value=0.093  Score=57.97  Aligned_cols=48  Identities=29%  Similarity=0.308  Sum_probs=32.2

Q ss_pred             CcccccccchHHH---HHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKL---VHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~---~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.|.+-..+.+   .+|+...    ....+-+.++|+||+|||+|+..+...+
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~----~~~~~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSK----KMAGRAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHHhC----CCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence            4566777666543   3444432    1133458889999999999999998554

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.49  E-value=0.061  Score=52.07  Aligned_cols=21  Identities=38%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q psy9384          39 GALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ++.|.|+|||||||+++.+..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999975

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.48  E-value=0.043  Score=53.67  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .-+++|.|+|||||||++..+.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999744

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=92.48  E-value=0.062  Score=51.85  Aligned_cols=24  Identities=29%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...++.|+|.+||||||+++.+.+
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999999974

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=92.47  E-value=0.12  Score=52.34  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++.|.|++|+|||+|+..+.+.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC
Confidence            45688899999999999999998665

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.44  E-value=0.058  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhc
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      -++.|+|.+||||||+++.+.+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999973

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=92.43  E-value=0.057  Score=59.82  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+..|+..       +.+.+.|.|+||+|||+++..++..+.
T Consensus        36 ~~~~~i~~-------~~~~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           36 IVMKAIKE-------KKHHVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             HHHHHHHS-------SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-------CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34567775       235999999999999999999997664

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=92.41  E-value=0.037  Score=54.03  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+|.|+|||||||+++.+.+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999844

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=92.40  E-value=0.037  Score=54.15  Aligned_cols=23  Identities=43%  Similarity=0.693  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..++|.|.|||||||+++.+.+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999999844

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=92.37  E-value=0.069  Score=50.19  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.|+|++|+|||||+..+++..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999998553

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=92.36  E-value=0.21  Score=56.04  Aligned_cols=56  Identities=13%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS  105 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~  105 (978)
                      .+.+..|.|.||+|||+|+..++.+....        .+..+.||-+  ..    ++..+++-++.+...
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--------~g~~vl~~s~--E~----s~~~l~~r~~~~~~~  296 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--------MGKKVGLAML--EE----SVEETAEDLIGLHNR  296 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTT--------SCCCEEEEES--SS----CHHHHHHHHHHHHTT
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHh--------cCCcEEEEec--cC----CHHHHHHHHHHHHcC
Confidence            45678889999999999999998664421        1345665432  22    455666666555543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=92.34  E-value=0.068  Score=50.10  Aligned_cols=22  Identities=55%  Similarity=0.744  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|.|++|||||||++.+...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999988744

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=92.33  E-value=0.069  Score=58.05  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....+++|.|.|||||||++..+.+.
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            35678999999999999999999744

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.29  E-value=0.072  Score=53.28  Aligned_cols=24  Identities=46%  Similarity=0.708  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..++.|.|+||||||||++.+.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~   50 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQN   50 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999844

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=92.29  E-value=0.2  Score=50.86  Aligned_cols=26  Identities=19%  Similarity=0.128  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..++.|.|++|+|||+|+..+.+.+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            35788999999999999999987653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=92.25  E-value=0.041  Score=58.67  Aligned_cols=46  Identities=22%  Similarity=0.298  Sum_probs=30.5

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .|.|.+.+.+....-+..+      ..+-++|+|+||+|||+|+..+...+.
T Consensus        25 ~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           25 AIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             hccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHhCc
Confidence            3667766554433222221      223489999999999999999986654

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=92.25  E-value=0.19  Score=55.82  Aligned_cols=49  Identities=16%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CCCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccc
Q psy9384         154 PKTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQS  209 (978)
Q Consensus       154 ~~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~  209 (978)
                      ..+.++||||.+.+.-...    .+++.+.|.++.+...   ..++.+++++.|+.
T Consensus       341 ~lP~ivvVIDE~~~L~~~~----~~~~~~~L~~Iar~GR---a~GIhLIlaTQRPs  389 (574)
T 2iut_A          341 TLPTIVVVVDEFADMMMIV----GKKVEELIARIAQKAR---AAGIHLILATQRPS  389 (574)
T ss_dssp             CCCEEEEEESCCTTHHHHT----CHHHHHHHHHHHHHCT---TTTEEEEEEESCCC
T ss_pred             CCCcEEEEEeCHHHHhhhh----hHHHHHHHHHHHHHHh---hCCeEEEEEecCcc
Confidence            3457999999998764221    2234456666666543   24789999887765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=92.25  E-value=0.05  Score=50.06  Aligned_cols=25  Identities=32%  Similarity=0.264  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -++++|.|.+|+|||||+..++..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999999665

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=92.23  E-value=0.068  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhc
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ++++.|.|++|+|||||+..+..
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999974

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.21  E-value=0.066  Score=51.74  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q psy9384          39 GALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+.|.|.+||||||+++.+..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            578999999999999999985

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=92.19  E-value=0.52  Score=49.53  Aligned_cols=27  Identities=30%  Similarity=0.281  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            457899999999999999999885543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=92.14  E-value=0.2  Score=54.76  Aligned_cols=26  Identities=23%  Similarity=0.211  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+..|.|.||+|||+++..++.+.
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            45688889999999999999998553

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=92.14  E-value=0.13  Score=52.83  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..++.|.|++|||||+|+..+.+.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4578999999999999999988654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=92.11  E-value=0.067  Score=53.63  Aligned_cols=26  Identities=31%  Similarity=0.380  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+++|.|++||||||+++.+.+.|
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999998554

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=92.10  E-value=0.075  Score=51.35  Aligned_cols=26  Identities=31%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.+.++.|.+||||||++..+.++|.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999987764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.07  E-value=0.051  Score=52.62  Aligned_cols=27  Identities=19%  Similarity=0.054  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+.+|.|.+||||||++..+.+++.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            356888999999999999999987764

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=92.05  E-value=0.26  Score=46.24  Aligned_cols=54  Identities=17%  Similarity=0.121  Sum_probs=33.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSL   99 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl   99 (978)
                      ..+.+.+++++|.|||+++--+.-....         ....|.++=|-.+. .......++..|
T Consensus        27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g---------~G~rV~~vQF~Kg~-~~~gE~~~l~~L   80 (196)
T 1g5t_A           27 ERGIIIVFTGNGKGKTTAAFGTAARAVG---------HGKNVGVVQFIKGT-WPNGERNLLEPH   80 (196)
T ss_dssp             CCCCEEEEESSSSCHHHHHHHHHHHHHH---------TTCCEEEEESSCCS-SCCHHHHHHGGG
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEEeeCCC-CCccHHHHHHhC
Confidence            5678999999999999999877622111         13445544333332 444555566554

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=91.99  E-value=0.078  Score=51.39  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++++|+|.+||||||++..+.+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            38999999999999999999743

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=91.90  E-value=0.079  Score=51.52  Aligned_cols=24  Identities=38%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...++.|.|++|||||||+..+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999974

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=91.83  E-value=0.094  Score=49.68  Aligned_cols=26  Identities=15%  Similarity=0.422  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++++.|.|++|+|||||+..+....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            55789999999999999999998553

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=91.77  E-value=0.27  Score=54.18  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+..|.|.||+|||+|+..++.+.
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688899999999999999998553

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=91.76  E-value=0.1  Score=55.79  Aligned_cols=26  Identities=35%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+.|+|+||+|||+++..+...+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34568899999999999999998554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=91.66  E-value=0.62  Score=48.68  Aligned_cols=27  Identities=26%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence            456899999999999999999985543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=91.58  E-value=0.082  Score=53.17  Aligned_cols=21  Identities=38%  Similarity=0.713  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|+|+||+|||+|+..+...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999844

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=91.51  E-value=0.088  Score=52.75  Aligned_cols=22  Identities=36%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++.|.|+||||||||+..+..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            5788999999999999999754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=91.45  E-value=0.1  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhc
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.+..|+|.+||||||++..+.+
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999974

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=91.28  E-value=0.11  Score=53.11  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=20.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      ...++.|+|.|||||||++..+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34578899999999999999997

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=91.26  E-value=0.28  Score=50.49  Aligned_cols=59  Identities=14%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCCCch---------------hhhhhhhccceeeeccccCCC--CccCHHHH
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSAESSF---------------SQQHNLRKKLLAYHFCQSYDL--ATFSVQNF   95 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~---------------~~~~~~~~~~~~~ff~~~~~~--~~~~~~~~   95 (978)
                      .+++.|.|++|+|||+|+..+.+.+....-               .+........+.|||.+..++  +..+...+
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F  115 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADF  115 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHH
Confidence            358899999999999999999988752110               000112245688888887766  34444333

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=91.24  E-value=0.036  Score=54.16  Aligned_cols=23  Identities=30%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++.|.|.+||||||++..+.+.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999998654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=91.14  E-value=0.12  Score=50.29  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||+..+...+
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            45789999999999999999998554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.09  E-value=0.35  Score=50.63  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            456899999999999999999985543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=91.07  E-value=0.095  Score=54.31  Aligned_cols=22  Identities=45%  Similarity=0.662  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhc
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+++|.|.|||||||+++.+.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999974

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=91.02  E-value=0.11  Score=51.78  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++-|.|+.|||||||++.+...+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999987543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.81  E-value=0.082  Score=51.91  Aligned_cols=27  Identities=30%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+.+|.|.+||||||++..+.+.+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346889999999999999999986653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=90.78  E-value=0.12  Score=51.23  Aligned_cols=42  Identities=24%  Similarity=0.197  Sum_probs=27.7

Q ss_pred             ccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          14 CREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        14 ~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..++++.+.-=+...     -....++|.|.+||||||++..+...
T Consensus        30 ~~~~~l~~~~~~i~~~-----l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPY-----LNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             --CHHHHHHHHTTHHH-----HTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             Ccchhhhhhhhhhhhh-----cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4456676654333310     01358999999999999999999743

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=90.73  E-value=0.13  Score=49.12  Aligned_cols=20  Identities=45%  Similarity=0.599  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q psy9384          39 GALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +..++|.||+|||++|...+
T Consensus         7 i~l~tG~pGsGKT~~a~~~~   26 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMM   26 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            56789999999999998765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=90.62  E-value=0.14  Score=48.30  Aligned_cols=24  Identities=33%  Similarity=0.113  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.+++|+||+||||++-.++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            358889999999999999777643

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=90.60  E-value=0.14  Score=49.51  Aligned_cols=26  Identities=15%  Similarity=0.146  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||+..+..-+
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45699999999999999999997443

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=90.60  E-value=0.075  Score=51.83  Aligned_cols=27  Identities=22%  Similarity=0.022  Sum_probs=19.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+.+|.|++||||||++..+.+.+.
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346788999999999999999986653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=90.53  E-value=0.16  Score=47.66  Aligned_cols=25  Identities=36%  Similarity=0.505  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.|.|++|+|||+|+..+++..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4668899999999999999999764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=90.53  E-value=0.14  Score=50.01  Aligned_cols=25  Identities=36%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++.|.|+.|||||||+..+...
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4578999999999999999999743

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=90.52  E-value=0.096  Score=50.84  Aligned_cols=26  Identities=27%  Similarity=0.052  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.++.|.+||||||++..+.+.+
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999998665

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=90.44  E-value=0.15  Score=46.44  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|+|||||++.+...+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            55689999999999999999998655

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=90.42  E-value=0.12  Score=55.59  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++|+|+||+|||+++..+...+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999998554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=90.36  E-value=0.15  Score=49.77  Aligned_cols=24  Identities=29%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+.+..|.|+||+|||+|+..++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999984

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=90.33  E-value=0.24  Score=47.49  Aligned_cols=25  Identities=32%  Similarity=0.317  Sum_probs=22.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++..|.|..||||||++..+.+.|.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5778899999999999999997764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=90.32  E-value=0.21  Score=51.31  Aligned_cols=47  Identities=23%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             cccchHHHHHHHhcCCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          15 REWAFVKLVHCLESKTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++|+.+++.+.+.....-  ......++.|.|.+|+||||++..+...+
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A           80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            567777888877653200  12345689999999999999999998543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=90.32  E-value=0.14  Score=50.62  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++.|.|++|||||||+..+...
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999854

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=90.28  E-value=0.15  Score=50.45  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++.|.|+||+|||+|+..++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4468899999999999999999843

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=90.21  E-value=0.17  Score=53.54  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.|.|++|+|||+|+..+.+.+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            578899999999999999887543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=90.19  E-value=0.11  Score=51.38  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=16.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh-cC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV-FP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii-~~   60 (978)
                      .+.++.|.|++|||||||+..+. ..
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            35689999999999999999998 54

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=90.05  E-value=0.13  Score=51.30  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+..|.|.+||||||++..+.+++.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            5788899999999999999997764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=89.96  E-value=0.12  Score=52.32  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+..|.|.+||||||++..+.+++.
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35778899999999999999998774

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=89.94  E-value=0.17  Score=53.70  Aligned_cols=24  Identities=33%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+.++.|.|+||+|||||+..+..
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            556899999999999999999984

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=89.93  E-value=0.18  Score=50.01  Aligned_cols=27  Identities=30%  Similarity=0.181  Sum_probs=22.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          34 PGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        34 ~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +....++.|.|.|||||||++..+.+.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            345568899999999999999999743

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=89.91  E-value=0.12  Score=49.91  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+..+.|.+|+||||++..+.+++.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            346888899999999999999997764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=89.89  E-value=0.17  Score=46.94  Aligned_cols=25  Identities=28%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -.++.|.|.+|+|||||+..++..+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            3689999999999999999998553

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=89.89  E-value=0.39  Score=47.81  Aligned_cols=58  Identities=14%  Similarity=0.085  Sum_probs=35.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFI   96 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l   96 (978)
                      .+.++.|.|+.|||||||+..+..-+...+..-.   ....++|.|-+.......++...+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~~~i~~v~q~~~~~~~~tv~enl   87 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE---VYQSIGFVPQFFSSPFAYSVLDIV   87 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE---ECSCEEEECSCCCCSSCCBHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---EeccEEEEcCCCccCCCCCHHHHH
Confidence            4568999999999999999999866543221110   123467766443333334554443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=89.86  E-value=0.17  Score=51.66  Aligned_cols=25  Identities=28%  Similarity=0.618  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++.|.|++|||||||+..+..-
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            5678999999999999999998743

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=89.69  E-value=0.28  Score=50.56  Aligned_cols=26  Identities=19%  Similarity=-0.012  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..-++-|.|++||||||++..+...+
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44578899999999999999987544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=89.65  E-value=0.18  Score=47.66  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.|.|++|+|||||++.+...+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            368899999999999999988543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=89.48  E-value=1  Score=45.02  Aligned_cols=25  Identities=40%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.++.|.|+.|||||||++.+.--+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999998665

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=89.43  E-value=0.19  Score=45.76  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....+.|.|.+|+|||+++..+++.
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3457889999999999999999854

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=89.29  E-value=0.2  Score=50.26  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++++.|.|+.|||||||++.+...
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHh
Confidence            5579999999999999999998744

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=89.25  E-value=0.18  Score=57.02  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++++.|+|+||+|||+++..++..+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999998554

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=89.12  E-value=0.13  Score=58.20  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++||+|.|||||||++..+.+.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44689999999999999999998654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=89.11  E-value=0.21  Score=49.70  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+..|.|+||+|||+|+..++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4578999999999999999999854

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=89.05  E-value=0.63  Score=50.11  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             cchHHHHHHHhcCCCC--CCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          17 WAFVKLVHCLESKTNS--KPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        17 w~~~~~~~wl~~~~~~--~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+++.+++......  ..+...++.+.|.||+||||++..++..+.
T Consensus        78 ~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           78 IVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             HHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            4445667776642111  112467899999999999999999986543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=88.88  E-value=0.13  Score=47.62  Aligned_cols=23  Identities=35%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++.|.|..|||||||+..++..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999844

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=88.79  E-value=0.24  Score=51.10  Aligned_cols=26  Identities=15%  Similarity=-0.031  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++-|.|++|||||||+..+...+
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhc
Confidence            55689999999999999999987543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=88.76  E-value=0.27  Score=51.67  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++++.|.|+.||||||++..++..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            44699999999999999999987543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=88.75  E-value=0.18  Score=49.29  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+++|+|.||||||+++..+.+.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999744

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=88.69  E-value=0.15  Score=56.97  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++|+.|.|||||||++..+.+.+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999998543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=88.65  E-value=0.25  Score=48.72  Aligned_cols=26  Identities=19%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||.+.+..-+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998554

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=88.57  E-value=0.27  Score=55.51  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++||+|.|||||||++..+.+.|
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998553

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=88.57  E-value=0.24  Score=51.27  Aligned_cols=26  Identities=19%  Similarity=0.018  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++-|.|++|||||||++.+...+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999987543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=88.46  E-value=0.24  Score=49.45  Aligned_cols=25  Identities=32%  Similarity=0.731  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+..|.|+||+|||+|+..++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999998888743

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=88.43  E-value=0.23  Score=50.63  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+..|.|+||+|||||+..++..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999988743

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=88.43  E-value=0.15  Score=53.70  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+..|.|+||+|||+|+..++.+
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999854

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=88.41  E-value=0.14  Score=53.78  Aligned_cols=25  Identities=32%  Similarity=0.242  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+..|.|+||+|||+|+..++..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999844

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=88.37  E-value=0.35  Score=49.63  Aligned_cols=45  Identities=20%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             ccchHHHHHHHhcCC--C--C-CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          16 EWAFVKLVHCLESKT--N--S-KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~--~--~-~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++.+++.+.+....  .  + ....+.++.|.|+.|+||||+++.+...
T Consensus        74 ~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           74 DALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             HHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            455566777765431  0  0 1234568999999999999999988743

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=88.22  E-value=0.28  Score=50.82  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.|.|.||+||||++..+...
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            34888999999999999998744

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=88.07  E-value=0.24  Score=57.42  Aligned_cols=25  Identities=44%  Similarity=0.650  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+..|.|+||+|||+.+..+|.++
T Consensus       205 ~~~~lI~GPPGTGKT~ti~~~I~~l  229 (646)
T 4b3f_X          205 KELAIIHGPPGTGKTTTVVEIILQA  229 (646)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999888554

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=88.05  E-value=0.17  Score=51.79  Aligned_cols=26  Identities=15%  Similarity=0.142  Sum_probs=18.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++-|+|++||||||+++.+.+.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999997543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=88.03  E-value=0.28  Score=47.59  Aligned_cols=25  Identities=20%  Similarity=-0.020  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+.+++|+||+||||++-.++..
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r   35 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHR   35 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHH
Confidence            4568888999999999999888744

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=87.98  E-value=0.24  Score=47.59  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=29.1

Q ss_pred             CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384           7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus         7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+.++| |...+++.+    .        .+.++.|.|+.|||||||+..+.-
T Consensus         5 i~pk~~-g~~~~l~~i----~--------~Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A            5 IRPKTL-GQKHYVDAI----D--------TNTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             CCCCSH-HHHHHHHHH----H--------HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred             cccCCH-hHHHHHHhc----c--------CCCEEEEECCCCCCHHHHHHHHhc
Confidence            455666 334556554    2        336899999999999999999873

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=87.89  E-value=0.26  Score=50.80  Aligned_cols=25  Identities=20%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+..|.|.||+|||||+..+...
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999844

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=87.78  E-value=0.22  Score=53.67  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +-++++|+||+|||+++..+...+
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l   74 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHc
Confidence            458899999999999999998655

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=87.78  E-value=0.39  Score=49.75  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=33.9

Q ss_pred             cccchHHHHHHHhcCC-----C---CCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          15 REWAFVKLVHCLESKT-----N---SKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~-----~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++|+.+++.+++....     .   .......++.+.|.+|+||||++..+...+
T Consensus        75 ~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A           75 KDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             HHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566677888886542     0   012346689999999999999999998543

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=87.74  E-value=0.3  Score=46.05  Aligned_cols=25  Identities=20%  Similarity=0.097  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+..|+|.|||||++++..+.+.
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~   34 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSR   34 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHH
Confidence            4568899999999999999999753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=87.70  E-value=0.31  Score=47.82  Aligned_cols=27  Identities=26%  Similarity=0.257  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            456899999999999999999986654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=87.57  E-value=0.31  Score=48.29  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+..-+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456899999999999999999985543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=87.56  E-value=0.31  Score=50.91  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.+..|.|+||+|||+|+..++.+..
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~  132 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ  132 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence            456889999999999999999986543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=87.55  E-value=0.31  Score=48.41  Aligned_cols=27  Identities=37%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456899999999999999999875543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=87.52  E-value=0.33  Score=46.21  Aligned_cols=23  Identities=26%  Similarity=0.166  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..|.|..||||||.+..+.++|.
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~   25 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLE   25 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            35679999999999999997764

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=87.39  E-value=0.28  Score=56.23  Aligned_cols=25  Identities=36%  Similarity=0.582  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++++.++|+||+|||++++.++..+
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999988554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=87.39  E-value=0.34  Score=48.65  Aligned_cols=27  Identities=37%  Similarity=0.476  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456899999999999999999875543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=87.34  E-value=0.41  Score=51.58  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             ccchHHHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          16 EWAFVKLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .|+.+++.+++......   ..+...++.+.|.+|+||||++..+...+
T Consensus        73 ~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           73 SIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             HHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45556677776642111   12246789999999999999999998554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=87.32  E-value=0.33  Score=48.18  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456899999999999999999986553

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=87.31  E-value=0.36  Score=49.56  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...++.|.|+.||||||++..+...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999998743

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=87.31  E-value=0.2  Score=55.16  Aligned_cols=27  Identities=4%  Similarity=-0.060  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...++||+|.+||||||++..+.+.|.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHH
Confidence            336899999999999999999986654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=87.25  E-value=0.29  Score=51.26  Aligned_cols=25  Identities=32%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+..|.|+||+|||+|+..++..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999844

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=87.20  E-value=1.7  Score=58.63  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=24.5

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..|+..        ++-+.++|+||+|||+++......+
T Consensus      1297 l~~ll~~--------~~pvLL~GptGtGKT~li~~~L~~l 1328 (3245)
T 3vkg_A         1297 LHAWLSE--------HRPLILCGPPGSGKTMTLTSTLRAF 1328 (3245)
T ss_dssp             HHHHHHT--------TCCCEEESSTTSSHHHHHHHHGGGC
T ss_pred             HHHHHHC--------CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            4567663        3568899999999999988877544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=87.15  E-value=0.35  Score=48.81  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456899999999999999999986553

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=87.09  E-value=4.5  Score=42.78  Aligned_cols=117  Identities=11%  Similarity=0.056  Sum_probs=65.4

Q ss_pred             EEEEEeccccccccCCCcCCCcchhhHHHHHHhcc-------CCCCCceeeeeeecccccchh--hcccC-------ccc
Q psy9384         158 YFILVDSIDETHVTNKKIYSDKATCSIADLLARNH-------HLFPPWLFLFCTVRRQSKSIK--KMFLG-------FHK  221 (978)
Q Consensus       158 ~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~sr~~~~~i~--~~~~~-------~~~  221 (978)
                      -++++|-+++.+..-    +    ..|.+++....       ...+.++++|++|.+......  ..|+.       .-.
T Consensus       224 gtlfldei~~l~~~~----Q----~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~  295 (368)
T 3dzd_A          224 GTLFLDEVGELDQRV----Q----AKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQ  295 (368)
T ss_dssp             SEEEEETGGGSCHHH----H----HHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEE
T ss_pred             CeEEecChhhCCHHH----H----HHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeE
Confidence            379999999987431    2    23444444321       112346889998887654321  11221       113


Q ss_pred             cccccccchhhhhHHHHHHHHHhcCchHHHh-hcCcChHHHHHHHHhhc-hhhHHHHHHHHhhhh
Q psy9384         222 LSLDDLRKSHVIRDMQQYILLRLASEESLRV-HMNRDTAEMLNQLHIKS-NGCFLYLERVLDGIS  284 (978)
Q Consensus       222 i~l~~~~~~~~~~Di~~yi~~~l~~~~~~~~-~~~~~~~~i~~~l~~~a-~g~flw~~~~~~~l~  284 (978)
                      |.+...+.  ..+||...+.+-+.+...... ......++..+.|...+ .|+..-++-+++.+.
T Consensus       296 i~lPpLre--R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~  358 (368)
T 3dzd_A          296 IYLPPLRE--RGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAV  358 (368)
T ss_dssp             EECCCGGG--STTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred             EeCCChhh--chhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence            44543332  337888877776664432222 22335567777787766 888877777776653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=87.09  E-value=0.73  Score=52.30  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .++.|.|+.|||||||++.+.--+..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            56899999999999999999865543

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=87.08  E-value=5.1  Score=41.93  Aligned_cols=105  Identities=11%  Similarity=0.052  Sum_probs=59.5

Q ss_pred             EEEEEecccc-ccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecc-cc----cchhhc-ccCccccccccccch
Q psy9384         158 YFILVDSIDE-THVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRR-QS----KSIKKM-FLGFHKLSLDDLRKS  230 (978)
Q Consensus       158 ~~iviDaLDE-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~-~~----~~i~~~-~~~~~~i~l~~~~~~  230 (978)
                      -++|||..|. ...        +....|.+.+.    ..|+++.+|+++.. ..    ..+.+. .+.+..++.....  
T Consensus        78 kvvii~~~~~kl~~--------~~~~aLl~~le----~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~--  143 (343)
T 1jr3_D           78 QTLLLLLPENGPNA--------AINEQLLTLTG----LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE--  143 (343)
T ss_dssp             EEEEEECCSSCCCT--------THHHHHHHHHT----TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC--
T ss_pred             eEEEEECCCCCCCh--------HHHHHHHHHHh----cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC--
Confidence            4666776555 331        12334555554    33445556655532 21    112222 2234445554333  


Q ss_pred             hhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         231 HVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       231 ~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                        ..++..++..++.+.      .....++..+.|++.++|...-+.-.++.|.
T Consensus       144 --~~~l~~~l~~~~~~~------g~~i~~~a~~~l~~~~~gdl~~~~~elekl~  189 (343)
T 1jr3_D          144 --QAQLPRWVAARAKQL------NLELDDAANQVLCYCYEGNLLALAQALERLS  189 (343)
T ss_dssp             --TTHHHHHHHHHHHHT------TCEECHHHHHHHHHSSTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence              478999998877622      2234456788899999999888887777764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=87.07  E-value=0.35  Score=48.41  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            456899999999999999999986553

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=87.03  E-value=0.39  Score=46.22  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -.+.+.|+||+|||++|..+...+
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH
Confidence            347889999999999999887554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=86.90  E-value=0.35  Score=47.77  Aligned_cols=27  Identities=30%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+..-+.
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=86.89  E-value=0.25  Score=51.06  Aligned_cols=24  Identities=33%  Similarity=0.288  Sum_probs=21.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.|.|++|||||+|+..+.+.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            578999999999999999998665

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=86.84  E-value=0.35  Score=48.13  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++.|.|+.|||||||.+.+..-
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=86.66  E-value=0.39  Score=48.06  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            456899999999999999999885543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=86.53  E-value=0.38  Score=48.17  Aligned_cols=27  Identities=41%  Similarity=0.391  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999975543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=86.47  E-value=0.4  Score=48.27  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456899999999999999999875543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=86.45  E-value=0.38  Score=50.38  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...++-|.|.||+|||||+..+..
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999974

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=86.39  E-value=0.41  Score=48.18  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.++.|.|+.|||||||++.+.--
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=86.36  E-value=0.38  Score=44.53  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..|+|++|||||+++..+...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            578999999999999999844

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=86.36  E-value=0.34  Score=51.02  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+..|.|+||+|||+|+..++-..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998554

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=86.28  E-value=0.41  Score=47.24  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .++.|.|+.|||||||.+.+.--+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6899999999999999999985543

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=86.14  E-value=0.32  Score=46.52  Aligned_cols=26  Identities=19%  Similarity=-0.014  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..+.+|.|.+|||||+++..+.+.|.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999986653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=86.13  E-value=1.4  Score=49.30  Aligned_cols=146  Identities=16%  Similarity=0.121  Sum_probs=0.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcCCCchhHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSSESPFSEAFS  115 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~  115 (978)
                      .+.++.|.|+.|||||||++.+.--+...+..-.  .....++|.+-........++...+...............+.+.
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~--~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l  370 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVT--PEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT  370 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE--SSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--ECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH


Q ss_pred             h-hhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEe----ccccccccCCCcCCCcchhhHHHHHHh
Q psy9384         116 T-IVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVD----SIDETHVTNKKIYSDKATCSIADLLAR  190 (978)
Q Consensus       116 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviD----aLDE~~~~~~~~~~~~~~~~l~~l~~~  190 (978)
                      + +--...........+..+-+.-.+.+.|.         ..+=++++|    |||--.       +..+.+.|.++...
T Consensus       371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~---------~~p~lLlLDEPT~gLD~~~-------~~~i~~~l~~l~~~  434 (538)
T 3ozx_A          371 KRLNLHRLLESNVNDLSGGELQKLYIAATLA---------KEADLYVLDQPSSYLDVEE-------RYIVAKAIKRVTRE  434 (538)
T ss_dssp             TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH---------SCCSEEEEESTTTTCCHHH-------HHHHHHHHHHHHHH
T ss_pred             HHcCCHHHhcCChhhCCHHHHHHHHHHHHHH---------cCCCEEEEeCCccCCCHHH-------HHHHHHHHHHHHHh


Q ss_pred             ccCCCCCceeeeeee
Q psy9384         191 NHHLFPPWLFLFCTV  205 (978)
Q Consensus       191 ~~~~~~~~~~~~~~s  205 (978)
                      ...      -+|++|
T Consensus       435 ~g~------tvi~vs  443 (538)
T 3ozx_A          435 RKA------VTFIID  443 (538)
T ss_dssp             TTC------EEEEEC
T ss_pred             CCC------EEEEEe

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=85.87  E-value=0.6  Score=48.96  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             cccchHHHHHHHhcCC--C---CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          15 REWAFVKLVHCLESKT--N---SKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~--~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.++.+++.+.+....  .   .....+.++.|.|..|+||||+++.+...
T Consensus       130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence            3455566666665431  0   01234568999999999999999988744

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=85.85  E-value=0.43  Score=47.89  Aligned_cols=27  Identities=30%  Similarity=0.315  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            456899999999999999999985543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=85.84  E-value=0.48  Score=49.90  Aligned_cols=25  Identities=24%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...++-|.|.||+|||||+..++..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568899999999999999999853

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=85.70  E-value=0.4  Score=50.95  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++++.|.|++||||||++..+...
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            5578999999999999999999854

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=85.70  E-value=0.3  Score=54.72  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++||.|.+|||||||+..+...+
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            44689999999999999999998554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=85.66  E-value=0.49  Score=46.10  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ....+.+.|.||+|||+|+..++..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            44688899999999999999998553

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=85.60  E-value=0.37  Score=49.80  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=24.0

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          33 KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++..++..|.|.||+|||+|+..++..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4557789999999999999999999854

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=85.49  E-value=0.42  Score=45.67  Aligned_cols=21  Identities=38%  Similarity=0.485  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q psy9384          39 GALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+-|+|.+||||||+++.+.+
T Consensus        11 ~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366899999999999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=85.38  E-value=0.42  Score=51.09  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      ...+..|.|+||+|||+|+..++
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            45789999999999999999775

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=85.34  E-value=0.54  Score=49.80  Aligned_cols=27  Identities=33%  Similarity=0.402  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+...+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            446899999999999999999987654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=85.34  E-value=0.44  Score=46.84  Aligned_cols=25  Identities=36%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+..|.|+.||||||++..+...
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4468889999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=85.10  E-value=0.49  Score=47.86  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456899999999999999999985543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=85.06  E-value=0.5  Score=44.37  Aligned_cols=23  Identities=39%  Similarity=0.719  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhc
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .++..|+|+.|||||+|...|.-
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998863

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=84.99  E-value=0.35  Score=54.30  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..++|++|.|||||||++..+.+.+
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATML  396 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=84.86  E-value=0.29  Score=51.65  Aligned_cols=25  Identities=36%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ...+..|.|.||+|||+|+..++.+
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Confidence            4568888999999999999999854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=84.69  E-value=0.49  Score=50.96  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++++.|.|+.||||||++..++..+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            55789999999999999999998654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=84.62  E-value=0.73  Score=50.15  Aligned_cols=46  Identities=17%  Similarity=0.076  Sum_probs=31.5

Q ss_pred             cccchHHHHHHHhcCCC---CCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          15 REWAFVKLVHCLESKTN---SKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~---~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|+.+.+.+.+.....   .....+.++.|.|..|||||||+..+...
T Consensus       268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence            45566666666653210   11234568999999999999999998743

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=84.52  E-value=0.7  Score=43.73  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..-+.+.|.+|+|||+|+..+...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            346788999999999999999854

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=84.51  E-value=0.56  Score=48.63  Aligned_cols=45  Identities=24%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             ccchHHHHHHHhcCCCC-------CCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          16 EWAFVKLVHCLESKTNS-------KPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~-------~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +++.+++.+.+......       ....+.++.|.|++|+||||+++.+...
T Consensus       101 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          101 EAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             HHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34455666666543100       1124568999999999999999999844

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=84.45  E-value=0.57  Score=47.92  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.+.|.+|+||||++..+...+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=84.41  E-value=0.67  Score=49.63  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++++.|.|.+|+|||||+..+....
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            44689999999999999999998643

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=84.36  E-value=0.49  Score=54.47  Aligned_cols=25  Identities=44%  Similarity=0.590  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++..|.|+||+|||+++..++.++.
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l~  220 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHLA  220 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHH
Confidence            6889999999999999998886553

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=84.29  E-value=0.68  Score=47.57  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+..|.|++|+|||||+..+. .+
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            588999999999999999998 54

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=84.17  E-value=0.57  Score=49.13  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            456899999999999999999985543

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=84.03  E-value=0.39  Score=46.68  Aligned_cols=26  Identities=23%  Similarity=0.055  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..+.+|.|.+|||||+++..+.+.+
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999998554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=84.03  E-value=0.58  Score=47.59  Aligned_cols=27  Identities=26%  Similarity=0.257  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            456899999999999999999985543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=84.01  E-value=0.63  Score=41.90  Aligned_cols=22  Identities=50%  Similarity=0.755  Sum_probs=19.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHh
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +++..|+|+.|+|||+|...+.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999988875

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=83.99  E-value=0.36  Score=53.44  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..++++.|.||+||||++..+.+.
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999999999999844

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=83.96  E-value=0.64  Score=47.54  Aligned_cols=46  Identities=15%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             ccchHHHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          16 EWAFVKLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        16 ~w~~~~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+++..++......   -.....++.+.|.+|+||||++..+...+
T Consensus        74 ~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           74 KIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             HHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34445677787653100   01125688889999999999999998543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=83.76  E-value=0.62  Score=49.30  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...++.|+|.||+|||||+..++..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            55688999999999999999998554

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=83.73  E-value=1.1  Score=48.44  Aligned_cols=47  Identities=19%  Similarity=0.140  Sum_probs=34.6

Q ss_pred             cccchHHHHHHHhcCCCC---CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          15 REWAFVKLVHCLESKTNS---KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        15 r~w~~~~~~~wl~~~~~~---~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|+.+++.+++......   .....+++.+.|.+|+||||++..+...+
T Consensus        75 ~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           75 VKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             HHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            567888888998753211   11245688889999999999999998554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=83.65  E-value=0.77  Score=47.20  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.|.|++|+|||||...+...+
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            588999999999999999998544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=83.51  E-value=0.53  Score=49.06  Aligned_cols=26  Identities=38%  Similarity=0.516  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.++.|.|+.|||||||++.+...+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            46899999999999999999986653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=83.30  E-value=0.84  Score=44.56  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ....+.|.|.+|+|||+|+..++..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3466788899999999999999855

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=83.27  E-value=0.87  Score=47.61  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++.|.|.+|+|||||+..+...+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CEEEEECCCCccHHHHHHHHhccc
Confidence            578999999999999999998554

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=83.27  E-value=0.66  Score=48.92  Aligned_cols=27  Identities=26%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            457999999999999999999885543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=82.99  E-value=0.62  Score=48.94  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+..|.|+||+|||+|+..++.+
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999998855

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.94  E-value=0.68  Score=44.00  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      --+.+.|.+|+|||+|...+...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34788999999999999999844

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=82.76  E-value=0.57  Score=47.95  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+..-+.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            456899999999999999999875543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=82.53  E-value=0.58  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|.|+.|+|||||+..+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3678999999999999998743

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=82.51  E-value=0.65  Score=54.79  Aligned_cols=26  Identities=42%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +++..|.|+||+|||+++..++.++.
T Consensus       371 ~~~~lI~GppGTGKT~ti~~~i~~l~  396 (800)
T 2wjy_A          371 RPLSLIQGPPGTGKTVTSATIVYHLA  396 (800)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence            36889999999999999998886653

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=82.48  E-value=0.68  Score=45.42  Aligned_cols=22  Identities=27%  Similarity=0.179  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.-|+|+|||||||++..+.++
T Consensus         3 ~i~ltG~~~sGK~tv~~~l~~~   24 (241)
T 1dek_A            3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5678999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=82.48  E-value=0.65  Score=47.15  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++..|.|+||+|||+|+-+++..
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~   51 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSS   51 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36788999999999999998744

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=82.33  E-value=0.65  Score=48.41  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+..|.|+||+|||+|+..++.+
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578899999999999999998854

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=82.32  E-value=0.67  Score=43.51  Aligned_cols=21  Identities=43%  Similarity=0.735  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.||+|||+|+..++..
T Consensus         5 v~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            678999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=82.19  E-value=0.74  Score=43.11  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=21.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..--+.+.|.||+|||+|...+...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3445888999999999999999854

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=82.11  E-value=0.81  Score=49.10  Aligned_cols=25  Identities=32%  Similarity=0.296  Sum_probs=22.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...++..|.|.||||||++....+.
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhc
Confidence            4678999999999999999988873

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=82.09  E-value=0.65  Score=49.42  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...+.|.|++|||||||++.+...+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999986543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=82.07  E-value=0.67  Score=44.20  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      -+.|.|.+|+|||+|+..+...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            3678899999999999999854

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=82.06  E-value=0.48  Score=53.91  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -++|.|+||+|||.|+..+...+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTC
T ss_pred             ceEEECCCchHHHHHHHHHHHhC
Confidence            58899999999999999998654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=81.99  E-value=0.75  Score=46.90  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..+.|.|.+|+|||+++..++..
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            457899999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=81.97  E-value=1  Score=42.33  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhc
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .--+.+.|.+|+|||+|...+..
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            35588899999999999999984

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=81.93  E-value=0.88  Score=42.86  Aligned_cols=26  Identities=19%  Similarity=0.091  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+.+++|++|+||||.+-.++...
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            45689999999999999998887443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=81.74  E-value=0.69  Score=43.78  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.|.|.+|+|||+|+..+....
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            46778999999999999998553

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=81.35  E-value=0.81  Score=48.60  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||.+.+.--+
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            45799999999999999999987543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=81.27  E-value=0.79  Score=41.70  Aligned_cols=21  Identities=29%  Similarity=0.627  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.+|+|||+|+..++..
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678899999999999999854

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=81.24  E-value=0.8  Score=42.44  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      --+.|.|.||+|||+|...+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35788999999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=81.22  E-value=1.5  Score=45.09  Aligned_cols=42  Identities=14%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++++++++............-+.|.|.||+|||+|...++..
T Consensus         8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B            8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            356677776531111123346889999999999999999854

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=81.20  E-value=0.78  Score=42.11  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+.|.|.||+|||+|...+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35778999999999999999854

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=81.16  E-value=0.81  Score=45.95  Aligned_cols=26  Identities=35%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+..+.|.+|+||||++..+...+
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            34678889999999999999998554

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=81.04  E-value=0.79  Score=43.93  Aligned_cols=52  Identities=10%  Similarity=-0.063  Sum_probs=19.6

Q ss_pred             CCCCCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384           3 TETPGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus         3 ~~~~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      |++|-|+.-=.++.-+.+++..+....      ..--+.+.|.+|+|||+|...++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~m~~~~~~~------~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A            2 GSSHHHHHHSSGLVPRGSHMENLYFQG------QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             ----------------------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccccccccCCcccchhHHHhHhhcC------CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            444555433333444445555554432      2234778999999999999888743

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=81.01  E-value=0.78  Score=50.88  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +..+.|.|++||||||++..+...+.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35689999999999999999987664

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=80.90  E-value=0.78  Score=54.17  Aligned_cols=25  Identities=40%  Similarity=0.562  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++..|.|+||+|||+++..++.++
T Consensus       375 ~~~~lI~GppGTGKT~~i~~~i~~l  399 (802)
T 2xzl_A          375 RPLSLIQGPPGTGKTVTSATIVYHL  399 (802)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH
Confidence            3688999999999999999888554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=80.75  E-value=0.6  Score=48.99  Aligned_cols=27  Identities=33%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||.+.+.--+.
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456899999999999999999885443

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=80.43  E-value=0.92  Score=46.13  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..+.|.|.+|+|||+++..+++.
T Consensus       147 g~gvli~G~sG~GKStlal~l~~~  170 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLINK  170 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            456889999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=80.36  E-value=0.93  Score=41.91  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      -+.+.|.||+|||+|+..+...
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            3778999999999999999854

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=80.05  E-value=0.89  Score=41.66  Aligned_cols=21  Identities=14%  Similarity=0.366  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.+|+|||+|+..+...
T Consensus         8 i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            678899999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	978
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-66
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-65
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-52
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-52
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-41
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-37
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-31
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-38
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-36
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-36
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-33
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-27
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-33
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-33
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-26
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-29
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-25
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-25
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-20
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-28
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-28
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-22
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-28
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-26
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-25
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-28
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-28
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-22
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-22
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-21
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-20
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-22
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-20
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-19
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-18
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-06
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	7e-04
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  226 bits (577), Expect = 2e-66
 Identities = 109/415 (26%), Positives = 176/415 (42%), Gaps = 37/415 (8%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH      ++ ++K  L+        + +   +T L++AA  G  +  + LL+  A +N 
Sbjct: 4   LHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
              +  TPL  A+  GH+ +VKLLL++ A+ N +   G T L  AA  GH         +
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH---------V 112

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
             V  LL   A       +G T L  +A  G   +   +LE DA  N    +G T L V+
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 172

Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
                       +V +LL +G         G TPL +AA +   +V   LL+     +  
Sbjct: 173 V-----HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
              G TPL  AA  GHA  VALLL   A  +  +  G T L + A +G++ V + L+  G
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 287

Query: 647 MILGCLAGGRQT-------------------GSLDEQHRDNCGWTPLHYAAIEGHEEVCR 687
           +++        T                      D   +   G++PLH AA +GH ++  
Sbjct: 288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 347

Query: 688 ALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM--FLEQYEANVNQKSHDGRTA 740
            LL+ GA  ++V +DG  PL +A + G+  + ++   +    + V        + 
Sbjct: 348 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  224 bits (571), Expect = 1e-65
 Identities = 115/386 (29%), Positives = 168/386 (43%), Gaps = 44/386 (11%)

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
           T L+VA+  G +  V+ LL+ GA+ N ++ +  TPL  A+  GH+ V K LLQ+ A VN 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 440 SDMGGRTALRAAAWGGHLEVTIVL------------------------GPLCVVKLLLAA 475
                +T L  AA  GH  +  +L                        G +  V  LL  
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 476 GAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDG 535
            A       +G T L  +A  G   +   +LE DA  N    +G T L V+         
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV-----HHN 176

Query: 536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLW 595
              +V +LL +G         G TPL +AA +   +V   LL+     +     G TPL 
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 236

Query: 596 AAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGG 655
            AA  GHA  VALLL   A  +  +  G T L + A +G++ V + L+  G+        
Sbjct: 237 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-------- 288

Query: 656 RQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGH 715
                         G+TPLH A+  G+ ++ + LL+  A V+     G +PL  AAQ GH
Sbjct: 289 ------MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 342

Query: 716 YHLVEMFLEQYEANVNQKSHDGRTAL 741
             +V + L+   A+ N+ S DG T L
Sbjct: 343 TDIVTLLLK-NGASPNEVSSDGTTPL 367

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  187 bits (475), Expect = 2e-52
 Identities = 107/455 (23%), Positives = 169/455 (37%), Gaps = 67/455 (14%)

Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
           T L  +++MGH  IV ++L+  A  N  +    T L ++A       G+ +V   LL+  
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-----GHTEVAKYLLQNK 56

Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
           AKV+ + ++  TPL  AA  GH ++ ++LLEN A+ +    +G TPL  AA  GH   V 
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 608 LLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRD 667
            LL   A    +  +G T L VAA  G + V   LL+R                      
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA--------------HPNAAG 162

Query: 668 NCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYE 727
             G TPLH A    + ++ + LL  G        +G  PL +AA+     +    L+   
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 728 ANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPH 787
            + N +S  G T L +  +                                         
Sbjct: 223 -SANAESVQGVTPLHLAAQEGHA------------------------------------- 244

Query: 788 ISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVD 847
               E    L   +   ++ N   +   H    E  + V     ++   ++    +    
Sbjct: 245 ----EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 300

Query: 848 LSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGA 907
           L       +   V          D + +  LG S     +  AAQ+GH D V LLL  GA
Sbjct: 301 LHVASHYGNIKLV--KFLLQHQADVNAKTKLGYSP----LHQAAQQGHTDIVTLLLKNGA 354

Query: 908 DPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDS 942
            P      G     +A + G+ +V  +LK   D++
Sbjct: 355 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 389

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  187 bits (475), Expect = 2e-52
 Identities = 107/395 (27%), Positives = 162/395 (41%), Gaps = 56/395 (14%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           + K ++ LH      +  + K +L   +A  +    K  QT L+ AA  G  + V++LLE
Sbjct: 30  NVKVETPLHMAARAGHTEVAK-YLLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLE 87

Query: 400 AGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
             AN N     G TPL  A+  GH   V  LL+  A   C    G T L  AA  G + V
Sbjct: 88  NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 147

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDG 519
                     +LLL   AH NAA   G T L  + +  + DIV  +L      +    +G
Sbjct: 148 ---------AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

Query: 520 RTALSV----------------------------SALCVPSSDGYAKVVSILLEKGAKVD 551
            T L +                            + L + + +G+A++V++LL K A  +
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 258

Query: 552 HEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
             ++ G+TPL + A EGH  V ++L+++    D   + G TPL  A+  G+   V  LL 
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 318

Query: 612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671
             A V+     G + L  AA QG+ D+V  LL  G                     + G 
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA--------------SPNEVSSDGT 364

Query: 672 TPLHYAAIEGHEEVC---RALLEAGAKVDQVDNDG 703
           TPL  A   G+  V    + + +  + V   D   
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 399

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 1e-18
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 8/154 (5%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
             + +    + LH +  E ++ +    +K    + ++   + G T L+VA+H G +  V+
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG--VMVDATTRMGYTPLHVASHYGNIKLVK 314

Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGG 455
            LL+  A++N     G++PL  A+  GH+ +V LLL++GA  N     G T L  A   G
Sbjct: 315 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 374

Query: 456 HLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTA 489
           ++ VT VL      K++    + V  +D    + 
Sbjct: 375 YISVTDVL------KVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-07
 Identities = 13/65 (20%), Positives = 25/65 (38%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHY 948
           +AA+ GH +  + LL   A         +     AA+ GH  +++LL +   +       
Sbjct: 39  MAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 98

Query: 949 YYYYN 953
            +   
Sbjct: 99  GHTPL 103

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  151 bits (382), Expect = 8e-41
 Identities = 56/392 (14%), Positives = 98/392 (25%), Gaps = 75/392 (19%)

Query: 343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGA 402
           N   L  +      NL + F+ + E L L  +       + +   +      Q+L    A
Sbjct: 12  NDPQLRLIPWILWENLFQHFISANE-LSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 403 NINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIV 462
           + N    + W+                      D +   +        AA  G       
Sbjct: 71  HYNRNAKQLWS----------------------DAHKKGIKSEVICFVAAITGCSSA--- 105

Query: 463 LGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQD--NDGR 520
              L  + LLL +   V    +E   A   +A  GH  +++ + E            +  
Sbjct: 106 ---LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 162

Query: 521 TALSVSALCVPSSDGYAKVVSILLEKGAKVDH---EDREGMTPLLVAAFEGHRDVCEILL 577
            A  ++A        +  V++ L E          +          A   GH +V   LL
Sbjct: 163 HAFRLAAENG-----HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID 637
           +                      G       +            E      ++   G  D
Sbjct: 218 DCPVMLA-------YAEIHEFEYGEKYVNPFIARHVN----RLKEMHDAFKLSNPDGVFD 266

Query: 638 VVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGA--- 694
           +V +                     E  +       L     E   +  R LL       
Sbjct: 267 LVTK--------------------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 306

Query: 695 --KVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
                 +  D    L LA + G+     + L 
Sbjct: 307 LAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  141 bits (357), Expect = 2e-37
 Identities = 48/356 (13%), Positives = 93/356 (26%), Gaps = 55/356 (15%)

Query: 318 LKTKEVSDTPCSDTPVSRITMFDSKNQSVLHKLCAE-NNINLLKTFLKSCEA-------- 368
           +      +        + +++     +  +H       N+  ++  L    A        
Sbjct: 19  IPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQ 78

Query: 369 --LDLELVDKHGQTALNVAA---HQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGH 423
              D        +    VAA       +D + +LL +   +     E +   R A+  GH
Sbjct: 79  LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 138

Query: 424 SAVVKLLLQSGADVNCSD--MGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVN- 480
             V+  L +       +        A R AA  GHL          V+  L         
Sbjct: 139 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH---------VLNRLCELAPTEAT 189

Query: 481 --AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK 538
                        A+   GH ++++ +L+    +   +                  G   
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEY------------GEKY 237

Query: 539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAA 598
           V   +     +     +E      ++  +G  D+          +          L    
Sbjct: 238 VNPFIARHVNR----LKEMHDAFKLSNPDGVFDL------VTKSECLQGFYMLRNLIRRN 287

Query: 599 SMGHASCVALLLFWGAYVD-----TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
                  +  LL            TI  +   +L +A   GN      LL    +L
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  122 bits (307), Expect = 6e-31
 Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 25/269 (9%)

Query: 496 MGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDR 555
           + +A    +  +  +D +++         V+A+           + +LL     V     
Sbjct: 67  LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAIT--GCSSALDTLCLLLTSDEIVKVIQA 124

Query: 556 EGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS--GRTPLWAAASMGHASCVALLLFWG 613
           E      +AA  GH  V   L E    +               AA  GH   +  L    
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 184

Query: 614 AYVDTI---DAEGRTVLSVAAAQGNIDVVNQLLDRGMILG-CLAGGRQTGSLD------- 662
               T              A  +G+ +V+N LLD  ++L        + G          
Sbjct: 185 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 244

Query: 663 EQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
             +R          +  +G  ++                     LI    +     +   
Sbjct: 245 HVNRLKEMHDAFKLSNPDGVFDL------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

Query: 723 LEQ----YEANVNQKSHDGRTALRVNMKN 747
           L        A       D    LR+ ++ 
Sbjct: 299 LSIPGIKALAPTATIPGDANELLRLALRL 327

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.7 bits (224), Expect = 4e-20
 Identities = 37/290 (12%), Positives = 73/290 (25%), Gaps = 37/290 (12%)

Query: 655 GRQTGSLDEQHRDNCGWTPLHYAAIEGHEEV---CRALLEAGAKVDQVDNDGRAPLILAA 711
             +    D   +          AAI G          LL +   V  +  +      LAA
Sbjct: 75  NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 134

Query: 712 QDGHYHLVEMFLEQY-EANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLF 770
           ++GH H++    E      +     +   A R+  +N        L              
Sbjct: 135 ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP--------- 185

Query: 771 PLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCT 830
             T      +             +   +++  ++            H F      V    
Sbjct: 186 --TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-IHEFEYGEKYVNPFI 242

Query: 831 KRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIA 890
            R++  L + H             +   + P    +  ++   ++           +   
Sbjct: 243 ARHVNRLKEMH------------DAFKLSNPDGVFDLVTKSECLQGFYML----RNLIRR 286

Query: 891 AQEGHEDCVRLLLHYGADPK-----HSDHCGRNAFRVAAKSGHETVLRLL 935
             E   D +R LL                      R+A + G++    LL
Sbjct: 287 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.9 bits (188), Expect = 2e-15
 Identities = 45/360 (12%), Positives = 88/360 (24%), Gaps = 69/360 (19%)

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
             +    + +   +    V ++L    A  +   K   +                     
Sbjct: 43  SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK---------------- 86

Query: 614 AYVDTIDAEGRTVLSVAAAQGNIDV---VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
                   +   +  VAA  G       +  LL    I+              +      
Sbjct: 87  ------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV--------------KVIQAEN 126

Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVD--NDGRAPLILAAQDGHYHLVEMFLEQ--Y 726
           +     AA  GH  V   L E            +      LAA++GH H++    E    
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186

Query: 727 EANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNP 786
           EA    ++ +        +         +LL  P                     +    
Sbjct: 187 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP------------------VMLAYAEI 228

Query: 787 HISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAV 846
           H      K     + + ++    E    F  S  + + D+   ++         +LI   
Sbjct: 229 HEFEYGEKYVNPFIARHVNR-LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR- 286

Query: 847 DLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYG 906
             +          + S         T       +      + +A + G++    LLL   
Sbjct: 287 --NDEVLLDDIRFLLSIPGIKALAPTATIPGDANE----LLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.1 bits (129), Expect = 3e-08
 Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 21/183 (11%)

Query: 800 LRKIISIANNEHIILFHHSFSEWLLDV--KHCTKRYLCSLNDGHLIHAVDLSQRRQTSSS 857
           LR I  I        F  +    L+ +  K     +L    +   +       R+     
Sbjct: 16  LRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQV-------RQLLCLY 68

Query: 858 SAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHED---CVRLLLHYGADPKHSDH 914
            A  +   +    D H + I           +AA  G       + LLL      K    
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVI----CFVAAITGCSSALDTLCLLLTSDEIVKVIQA 124

Query: 915 CGRNAFRVAAKSGH-ETVLRLLKQYAD----DSEYFVHYYYYYNSAKSGHETVLRLLKQY 969
               AFR+AA++GH   + RL +          +   ++ +   +       + RL +  
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 184

Query: 970 ADD 972
             +
Sbjct: 185 PTE 187

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.4 bits (127), Expect = 6e-08
 Identities = 29/327 (8%), Positives = 74/327 (22%), Gaps = 48/327 (14%)

Query: 661 LDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-----------NDGRAPLIL 709
           L            +     +  E+V + L    A  ++                     +
Sbjct: 37  LSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV 96

Query: 710 AAQDGHYHLVEM--FLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILS 767
           AA  G    ++    L   +  V     +   A R+  +N              L++   
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN------------GHLHV--- 141

Query: 768 SLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVK 827
                 +  L     T    + + E      +  +   +     +     + +  ++  +
Sbjct: 142 ------LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 828 HCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEK- 886
           +       ++  GH      L       + + +          +  +   +   K     
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 255

Query: 887 ISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFV 946
             ++  +G  D V                                +R L           
Sbjct: 256 FKLSNPDGVFDLV------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 947 HYYYYYNS-------AKSGHETVLRLL 966
                 ++        + G++    LL
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALL 336

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 3e-38
 Identities = 88/329 (26%), Positives = 133/329 (40%), Gaps = 56/329 (17%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCE-GWTPLRSASWGGHSAVVKLLLQSGAD 436
               L  A     VD VQ LLE GAN+N  + E GWTPL +A       +V+LLL+ GAD
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
                  G T    AA  G +          ++KL L+ GA VN  D  G TA + +A  
Sbjct: 65  PVLRKKNGATPFLLAAIAGSV---------KLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDRE 556
           G    +  + +  A++N +                                   +   + 
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKE----------------------------DQERLRKG 147

Query: 557 GMTPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLW----AAASMGHASCVALLLF 611
           G T L+ AA +GH +V +ILL+   AD +  D  GR  L     ++      +   LLL 
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671
            GA V+     G+T L +A  + ++ +V +LL++  I             +    D+ G 
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-------------EINDTDSDGK 254

Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVD 700
           T L  A     +++   L + GA  D  D
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 1e-36
 Identities = 81/282 (28%), Positives = 126/282 (44%), Gaps = 5/282 (1%)

Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
           ++  +L K     +++L++  L+    ++ +  ++ G T L+ A      D V++LL  G
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHL-EVT 460
           A+       G TP   A+  G   ++KL L  GADVN  D  G TA   AA  G +  + 
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSIL-EYDADINQQDNDG 519
            +      V L              G TAL+ +A  GH +++  +L E  AD+N  DN G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 520 RTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
           R A  + AL          +  +LL+ GA V+     G TPL++A  + H  + + LLE 
Sbjct: 183 RNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 580 E-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           E  + +  D  G+T L  A  +       LL   GA  D  D
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 6e-36
 Identities = 79/311 (25%), Positives = 125/311 (40%), Gaps = 46/311 (14%)

Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSE-GRTALIASAYMGH 498
           + +     L  A     +++         V+ LL  GA+VN  + E G T L  +  M  
Sbjct: 1   AAVEDNHLLIKAVQNEDVDL---------VQQLLEGGANVNFQEEEGGWTPLHNAVQMSR 51

Query: 499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGM 558
            DIV  +L + AD   +  +G T   ++A+      G  K++ + L KGA V+  D  G 
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLAAIA-----GSVKLLKLFLSKGADVNECDFYGF 106

Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHID----------KSGRTPLWAAASMGHASCVAL 608
           T  + AA  G     + L +  A+ +             K G T L  AA  GH   + +
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 609 LL-FWGAYVDTIDAEGRTVLSVAAAQGNI----DVVNQLLDRGMILGCLAGGRQTGSLDE 663
           LL   GA V+  D  GR  L  A    +      + + LLD G               D 
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA--------------DV 212

Query: 664 QHRDNCGWTPLHYAAIEGHEEVCRALLE-AGAKVDQVDNDGRAPLILAAQDGHYHLVEMF 722
             R   G TPL  A  + H  + + LLE    +++  D+DG+  L+LA +     + E+ 
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

Query: 723 LEQYEANVNQK 733
            +   A+ +  
Sbjct: 273 CK-RGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-33
 Identities = 73/271 (26%), Positives = 108/271 (39%), Gaps = 25/271 (9%)

Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDND-GRTALSVSALCVPSSDGYAKVV 540
           A  E    LI +      D+V  +LE  A++N Q+ + G T L  +            +V
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-----SREDIV 55

Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASM 600
            +LL  GA      + G TP L+AA  G   + ++ L   AD +  D  G T    AA  
Sbjct: 56  ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

Query: 601 GHASCVALLL----------FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILG 650
           G    +  L                 + +   G T L  AA +G+++V+  LLD      
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM---- 171

Query: 651 CLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILA 710
               G    + D   R+         +     E +   LL+ GA V+     G+ PLILA
Sbjct: 172 ----GADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

Query: 711 AQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            +  H  LV+  LEQ    +N    DG+TAL
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 76/244 (31%), Positives = 107/244 (43%), Gaps = 9/244 (3%)

Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDRE-GMTPLLVAAFEGHRDVCEILLENEADQD 584
             L     +    +V  LLE GA V+ ++ E G TPL  A      D+ E+LL + AD  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 585 HIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
              K+G TP   AA  G    + L L  GA V+  D  G T    AA  G +  +  L  
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL-EAGAKVDQVDNDG 703
           RG  +      R+    D++     G T L  AA +GH EV + LL E GA V+  DN G
Sbjct: 127 RGANVNL----RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 704 RAPLIL---AAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQP 760
           R  LI    ++ D     +   L  + A+VN +   G+T L + ++         LL Q 
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 761 LLNI 764
            + I
Sbjct: 243 HIEI 246

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 2e-16
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLE-AGANINHTDCEGWTPLRSASWGGHSAVVK 428
           D+ +  + G+T L +A  +  +  VQ LLE     IN TD +G T L  A       + +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 429 LLLQSGADVNCSDM 442
           LL + GA  +C D+
Sbjct: 271 LLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 45/277 (16%), Positives = 89/277 (32%), Gaps = 18/277 (6%)

Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDND-GRAPLILAAQDGHYHLVEMFLEQYEANV 730
             L  A      ++ + LLE GA V+  + + G  PL  A Q     +VE+ L      V
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 731 NQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLF-PLTVEDLFTKFSTTNPHIS 789
            +K +     L   +    KL   +L     +N      F       ++ K         
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 790 RQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLS 849
           R          ++               +  +  ++V     + L     G  ++A D  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL----KILLD-EMGADVNACDNM 181

Query: 850 QRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEK-------ISIAAQEGHEDCVRLL 902
            R           ++D+         ++   + V  +       + +A ++ H   V+ L
Sbjct: 182 GRNALIH---ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 903 L-HYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
           L     +   +D  G+ A  +A +   + +  LL + 
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 7e-13
 Identities = 51/299 (17%), Positives = 103/299 (34%), Gaps = 26/299 (8%)

Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
           E   +L  A    ++D+V QLL+ G  +                 +  GWTPLH A    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANV-------------NFQEEEGGWTPLHNAVQMS 50

Query: 682 HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
            E++   LL  GA       +G  P +LAA  G   L+++F     A+VN+    G TA 
Sbjct: 51  REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF-LSKGADVNECDFYGFTAF 109

Query: 742 RVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILR 801
                     +  +L  +     +         ++   K   T    + +  K  + +L+
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRR--KTKEDQERLRKGGATALMDAAE--KGHVEVLK 165

Query: 802 KIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVP 861
            ++     +     +   +  +  +       + ++    L H  D++ R +    + + 
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLI 224

Query: 862 SATDEHFSRDTHMRIILGSSKVGEK-------ISIAAQEGHEDCVRLLLHYGADPKHSD 913
            A ++         +     ++ +        + +A +   +    LL   GA     D
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 9e-11
 Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
           + +   + ++ L     + ++ L++  L+     ++   D  G+TAL +A         +
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-EINDTDSDGKTALLLAVELKLKKIAE 270

Query: 396 ILLEAGANINHTD 408
           +L + GA+ +  D
Sbjct: 271 LLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 50/290 (17%), Positives = 85/290 (29%), Gaps = 65/290 (22%)

Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYEANVN-QKSHDGRTAL----RVNMKNVTKLSFWYL 756
           +    LI A Q+    LV+  LE   ANVN Q+   G T L    +++ +++ +L   + 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH- 61

Query: 757 LIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFH 816
                                             ++       L   I+ +     +   
Sbjct: 62  ----------------------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 817 HSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRI 876
                   D    T     ++            +                   R      
Sbjct: 94  KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-------------ANVNLRRKTKED 140

Query: 877 ILGSSKVGEK-ISIAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGHETVL-- 932
                K G   +  AA++GH + +++LL   GAD    D+ GRNA   A  S  ++ +  
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 933 ---RLLKQYAD------DSEYFVHYYYYYNSAKSGHETVLRLLKQYADDI 973
               LL   AD        +  +               V RLL+Q   +I
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKH----LGLVQRLLEQEHIEI 246

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 4e-33
 Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 16/232 (6%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           +  L     +  LK  + + ++      D+  +TAL+ A   G  + V+ LL+ G  +N 
Sbjct: 7   VCNLAYSGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            D  GW+PL  A+  G   +VK LL  GA VN  +  G T L  AA     E        
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE-------- 117

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVS 526
            +  +LL  GA+ +A D    TA+  +A  G+  ++  +L Y A  N QD +G T     
Sbjct: 118 -IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT----- 171

Query: 527 ALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE 578
            L +   +   +   +L+ +GA +  E++E  TPL VA   G   + + ++E
Sbjct: 172 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 9e-33
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 28/241 (11%)

Query: 451 AAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA 510
            A+ G LE         + + +LA  +     D + RTAL  +   GH +IV  +L+   
Sbjct: 10  LAYSGKLEE--------LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 511 DINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR 570
            +N +D+ G + L      + +S G  ++V  LL KGA+V+  ++ G TPL  AA +   
Sbjct: 62  PVNDKDDAGWSPL-----HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH 116

Query: 571 DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
           ++  +LLE  A+ D  D    T +  AA+ G+   + +LL++ A  +  D EG T L +A
Sbjct: 117 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 176

Query: 631 AAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL 690
             +  ++    L+ +G                    +    TPL  A   G   + + ++
Sbjct: 177 CDEERVEEAKLLVSQGA--------------SIYIENKEEKTPLQVAK-GGLGLILKRMV 221

Query: 691 E 691
           E
Sbjct: 222 E 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 4e-26
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 16/215 (7%)

Query: 528 LCVPSSDG-YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI 586
           +C  +  G   ++   +L   +     D++  T L  A   GH ++ E LL+     +  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
           D +G +PL  AAS G    V  LL  GA V+ ++  G T L  AA++   ++   LL+ G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 647 MILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAP 706
                          +   +D+   T +H AA +G+ ++   LL   A  +  D +G  P
Sbjct: 127 A--------------NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTP 172

Query: 707 LILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           L LA  +      ++ +    A++  ++ + +T L
Sbjct: 173 LHLACDEERVEEAKLLVS-QGASIYIENKEEKTPL 206

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 2e-20
 Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 16/198 (8%)

Query: 561 LLVAAFEGHRD-VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTI 619
           +   A+ G  + + E +L +++     D+  RT L  A S GH   V  LL  G  V+  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 620 DAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAI 679
           D  G + L +AA+ G  ++V  LL +G  +                 +  G TPLHYAA 
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQV--------------NAVNQNGCTPLHYAAS 112

Query: 680 EGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
           +   E+   LLE GA  D  D+     +  AA  G+   +   L  Y+A+ N +  +G T
Sbjct: 113 KNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK-MIHILLYYKASTNIQDTEGNT 171

Query: 740 ALRVNMKNVTKLSFWYLL 757
            L +            L+
Sbjct: 172 PLHLACDEERVEEAKLLV 189

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 1e-15
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 334 SRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDA 393
           +++   +    + LH   ++N   +    L+     + +  D +  TA++ AA +G +  
Sbjct: 94  AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG--ANPDAKDHYEATAMHRAAAKGNLKM 151

Query: 394 VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAW 453
           + ILL   A+ N  D EG TPL  A         KLL+  GA +   +   +T L+ A  
Sbjct: 152 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK- 210

Query: 454 GGHLEVTIVLGPLCVVKLLL 473
           GG            ++K ++
Sbjct: 211 GGLGL---------ILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 7e-11
 Identities = 36/264 (13%), Positives = 74/264 (28%), Gaps = 49/264 (18%)

Query: 674 LHYAAIEGH-EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQ 732
           +   A  G  EE+  ++L   +   + D D R  L  A   GH  +VE  L+      ++
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 733 KSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQE 792
                            ++    L     +N +              +   T  H +  +
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV-------------NQNGCTPLHYAASK 113

Query: 793 YKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRR 852
                                   H  +  LL+              G    A D  +  
Sbjct: 114 N----------------------RHEIAVMLLEG-------------GANPDAKDHYEAT 138

Query: 853 QTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHS 912
               ++A  +    H          +  ++    + +A  E   +  +LL+  GA     
Sbjct: 139 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 198

Query: 913 DHCGRNAFRVAAKSGHETVLRLLK 936
           +   +   +VA       + R+++
Sbjct: 199 NKEEKTPLQVAKGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.004
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYAD--DSEYFV 946
            AA +   +   +LL  GA+P   DH    A   AA  G+  ++ +L  Y    + +   
Sbjct: 109 YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 168

Query: 947 HYYYYYNSAKSGHETVLRLLKQYADDI 973
                + +         +LL      I
Sbjct: 169 GNTPLHLACDEERVEEAKLLVSQGASI 195

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (284), Expect = 9e-29
 Identities = 59/250 (23%), Positives = 87/250 (34%), Gaps = 14/250 (5%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGAN---INHTDCEGWTPLRSASWGGHSAVVKLL 430
           V + G TAL++A        +  LL   A    ++  +  G T L  A+  G ++ V+ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 431 LQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL------GPLCVVKLLLAAGAHVNAADS 484
             +GA V  ++ GG TAL  A          VL       P       L         D+
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP-DT 123

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
               A + S      +      ++   +  ++ DG T L               V  +  
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH----VAVIHKDAEMVRLLRD 179

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
                   E   G TPL +A       V E+LL+  AD       GRTPL +A    +  
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI 239

Query: 605 CVALLLFWGA 614
              LL   GA
Sbjct: 240 LARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 4e-25
 Identities = 59/260 (22%), Positives = 87/260 (33%), Gaps = 35/260 (13%)

Query: 483 DSEGRTALIASAYMGHADIVSSILEYDAD---INQQDNDGRTALSVSALCVPSSDGYAKV 539
             +G TAL  +    H   +  +L + A    ++ Q++ G+TAL ++A+      G A  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-----GEAST 60

Query: 540 VSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD--------------H 585
           V  L   GA V   +R G T L +A          +LL+                     
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
            D S       +              W   ++  + +G T L VA    + ++V  L D 
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705
           G  L                   CG TPLH A       V   LL+AGA        GR 
Sbjct: 181 GADLNK-------------PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227

Query: 706 PLILAAQDGHYHLVEMFLEQ 725
           PL  A    +  L  +    
Sbjct: 228 PLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 6e-25
 Identities = 57/256 (22%), Positives = 87/256 (33%), Gaps = 22/256 (8%)

Query: 404 INHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD---VNCSDMGGRTALRAAAWGGHLEVT 460
             +   +G T L  A    H   +  LL   A    ++  +  G+TAL  AA  G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 461 IVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGR 520
             L               V  A+  G TAL  +  +        +L+      +  +D  
Sbjct: 62  EKLYAAGA---------GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

Query: 521 TALS---------VSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRD 571
              S           A      +   +      +   +++ E+ +G TPL VA      +
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

Query: 572 VCEILLENEADQDH-IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVA 630
           +  +L +  AD +      GRTPL  A     AS + LLL  GA        GRT L  A
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

Query: 631 AAQGNIDVVNQLLDRG 646
             + N  +   L   G
Sbjct: 233 LLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.6 bits (231), Expect = 1e-21
 Identities = 48/283 (16%), Positives = 74/283 (26%), Gaps = 37/283 (13%)

Query: 665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQV---DNDGRAPLILAAQDGHYHLVEM 721
           +    G T LH A I  HE     LL   A  + +   ++ G+  L LAA  G    VE 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 722 FLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKF 781
                   +  +                  +   L  +P      S  +    +D     
Sbjct: 64  LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 782 STTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGH 841
           S     +  Q   +     R        E      H+     +  K      L       
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 842 LIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRL 901
           L                       E     T + +               +      + L
Sbjct: 184 LNK--------------------PEPTCGRTPLHLA-------------VEAQAASVLEL 210

Query: 902 LLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY-ADDSE 943
           LL  GADP    + GR     A    +  + RLL+ + A + E
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.6 bits (218), Expect = 6e-20
 Identities = 44/225 (19%), Positives = 70/225 (31%), Gaps = 38/225 (16%)

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHI---DKSGRTPLWAAASMGHASCVALLL 610
             +G T L +A    H    + LL   A  +++   +  G+T L  AA +G AS V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 611 FWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCG 670
             GA V   +  G T L +A           LL         A         +   D   
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 671 WTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDG--------------------------- 703
                 +      E      +   +++  + DG                           
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 704 -------RAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
                  R PL LA +     ++E+ L+   A+   + + GRT L
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPL 229

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 37/253 (14%), Positives = 63/253 (24%), Gaps = 76/253 (30%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFL-KSCEALDLELVDKHGQTALNVAA------------ 386
                + LH      +   L   L  S     L+L +  GQTAL++AA            
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 387 ---------------------HQGFVDAVQILLEAGANINHTDCEGWTP----------- 414
                                         +LL+   +      + +             
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 415 ---LRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL-------- 463
                 +     +            +   +  G T L  A      E+  +L        
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 464 -----------------GPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSIL 506
                                V++LLL AGA   A    GRT L ++    +  +   + 
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 507 EYDADINQQDNDG 519
            + A    +  DG
Sbjct: 246 AHGAP---EPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 889 IAAQEGHEDCVRLLLHYGADPKH---SDHCGRNAFRVAAKSGHETVLRLLKQYAD---DS 942
           +A    HE  +  LL + A  ++    +  G+ A  +AA  G  + +  L         +
Sbjct: 15  LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74

Query: 943 EYFVHYYYYYNSAKSGHETVLRLLKQYADDIPVVSD 978
           E   H   +       H     LL+         SD
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  114 bits (284), Expect = 2e-28
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 17/249 (6%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILL--------EAGANINHTDCEGWTPLRSASWGGHSAV 426
            +H +T L+  A     +  + L+         AGA++N  DC+  TPL  A       +
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 427 VKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL-----GPLCVVKLLLAAGAHVNA 481
           V  L+++GAD    +   R+AL  AA      + + +         + +L       +  
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 149

Query: 482 ADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVS 541
                    +ASA +          +  A  + +   GRTAL               V  
Sbjct: 150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH----YAAQVSNMPIVKY 205

Query: 542 ILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMG 601
           ++ EKG+  D +D +G TP+++AA EG  +V   L++  A  + +D +  T    A +  
Sbjct: 206 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 265

Query: 602 HASCVALLL 610
           H + V +  
Sbjct: 266 HHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  111 bits (278), Expect = 8e-28
 Identities = 61/315 (19%), Positives = 110/315 (34%), Gaps = 40/315 (12%)

Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
           E    L + +  G  A+ + + +   ++       RT L   A     E +  L      
Sbjct: 1   ESPIKLHTEA-AGSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIVHEA- 57

Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
           K  +AAGA VNA D +  T L+ +       +V+ +++  AD    +   R+AL      
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-----H 112

Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKS 589
             +++    ++  +L         +                               +  +
Sbjct: 113 QAAANRDFGMMVYMLNSTKLKGDIEELDRN-------------------GMTALMIVAHN 153

Query: 590 GRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMIL 649
                 A+A +       +     A  D+   +GRT L  AA   N+ +V          
Sbjct: 154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY-------- 205

Query: 650 GCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLIL 709
                       ++  +D  G TP+  AA EG  EV   L++ GA V+ VD        L
Sbjct: 206 -----LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 260

Query: 710 AAQDGHYHLVEMFLE 724
           A  + H+++V++F  
Sbjct: 261 AQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 95.2 bits (235), Expect = 4e-22
 Identities = 36/276 (13%), Positives = 75/276 (27%), Gaps = 10/276 (3%)

Query: 672 TPLH-YAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYE--- 727
           +P+  +    G   +   +      +       R  L   A +      E  +       
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 728 ----ANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFST 783
               A+VN    D  T L + +    +    YL+       I +      +         
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 784 TNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLI 843
                     K +  I     +      I+  +    +         K      +     
Sbjct: 121 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 180

Query: 844 HAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGE-KISIAAQEGHEDCVRLL 902
            +     R     ++ V +     +             + G+  I +AAQEG  + V  L
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 903 LHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQY 938
           +  GA  +  D     A ++A  + H  ++ +  + 
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 93.3 bits (230), Expect = 2e-21
 Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 16/260 (6%)

Query: 491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL------ 544
           + +   G   I   I     +I       RT L   A         A+    L+      
Sbjct: 6   LHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASN-----SSAEKSEDLIVHEAKE 59

Query: 545 --EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH 602
               GA V+  D +  TPL++A     R +   L++  AD    +KS R+ L  AA+   
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 119

Query: 603 ASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLD 662
              +  +L        I+   R  ++      + +  +Q+    +++   A     G+  
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 663 EQHRDNCGWTPLHYAAIEGHEE-VCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           +      G T LHYAA   +   V   + E G+  D+ D DG+ P++LAAQ+G   +V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 722 FLEQYEANVNQKSHDGRTAL 741
            ++   A+V        TA 
Sbjct: 240 LIQ-QGASVEAVDATDHTAR 258

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (177), Expect = 1e-14
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 335 RITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAV 394
           R      K ++ LH     +N+ ++K      +  + +  D+ G+T + +AA +G ++ V
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYL-VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 395 QILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQ 432
             L++ GA++   D    T  + A    H  +V +  +
Sbjct: 238 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 401 GANINHTDCEGWTPLRSASWGGHSAVVKLL-LQSGADVNCSDMGGRTALRAAAWGGHLEV 459
            A  +    +G T L  A+   +  +VK L  + G++ +  D  G+T +  AA  G +EV
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY 508
                    V  L+  GA V A D+   TA   +    H +IV      
Sbjct: 237 ---------VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 366 CEALDLELVDKHGQTALNVAAHQGFVDAVQIL-LEAGANINHTDCEGWTPLRSASWGGHS 424
             A   +     G+TAL+ AA    +  V+ L  E G+N +  D +G TP+  A+  G  
Sbjct: 175 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 234

Query: 425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLL 473
            VV  L+Q GA V   D    TA + A    H           +V +  
Sbjct: 235 EVVMYLIQQGASVEAVDATDHTARQLAQANNHHN---------IVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 340 DSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLE 399
           D   ++ +     E  I ++  +L    A  +E VD    TA  +A      + V I   
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVM-YLIQQGA-SVEAVDATDHTARQLAQANNHHNIVDIFDR 275

Query: 400 A 400
            
Sbjct: 276 C 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  114 bits (284), Expect = 2e-28
 Identities = 75/285 (26%), Positives = 112/285 (39%), Gaps = 34/285 (11%)

Query: 441 DMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
                    AA   G  E          V  LL  GA +N A+ +G TAL  +    + D
Sbjct: 37  KFDDGAVFLAACSSGDTEE---------VLRLLERGADINYANVDGLTALHQACIDDNVD 87

Query: 501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTP 560
           +V  ++E  A+INQ DN+G   L        +S GY  +   L+ +GA V   + EG TP
Sbjct: 88  MVKFLVENGANINQPDNEGWIPL-----HAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID 620
           L +A  E   ++ +       + +               +        L           
Sbjct: 143 LDIAEEEAMEELLQN------EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196

Query: 621 AEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIE 680
             G T L VAAA+G  +V+  L+                  D   +D  GWTPLH AA  
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARY--------------DVNIKDYDGWTPLHAAAHW 242

Query: 681 GHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           G EE CR L+E    ++ V+  G+    +A +D   +L E+  +Q
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  107 bits (268), Expect = 2e-26
 Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 20/258 (7%)

Query: 374 VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           V          A   G  + V  LLE GA+IN+ + +G T L  A    +  +VK L+++
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA++N  D  G   L AAA  G+         L + + L++ GAHV A +SEG T L  +
Sbjct: 96  GANINQPDNEGWIPLHAAASCGY---------LDIAEYLISQGAHVGAVNSEGDTPLDIA 146

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
                 +++ + +       +                            L          
Sbjct: 147 EEEAMEELLQNEVNRQGVDIEAARKEEE-----------RIMLRDARQWLNSGHINDVRH 195

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWG 613
            + G T L VAA +G+ +V ++L++   D +  D  G TPL AAA  G      +L+   
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 614 AYVDTIDAEGRTVLSVAA 631
             ++ ++  G+T   VA 
Sbjct: 256 CDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  105 bits (262), Expect = 2e-25
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 19/249 (7%)

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
             D       +      S G  + V  LLE+GA +++ + +G+T L  A  + + D+ + 
Sbjct: 37  KFDDGAVFLAAC-----SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
           L+EN A+ +  D  G  PL AAAS G+      L+  GA+V  +++EG T L +A  +  
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

Query: 636 IDVVNQLLDRGMILG-------------CLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
            +++   ++R  +                      +G +++      G T LH AA +G+
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 683 EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR 742
            EV + L++A   V+  D DG  PL  AA  G      + +E    ++   +  G+TA  
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFD 270

Query: 743 VNMKNVTKL 751
           V  +++   
Sbjct: 271 VADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.5 bits (197), Expect = 5e-17
 Identities = 49/269 (18%), Positives = 79/269 (29%), Gaps = 23/269 (8%)

Query: 670 GWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEAN 729
                  A   G  E    LLE GA ++  + DG   L  A  D +   +  FL +  AN
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVD-MVKFLVENGAN 98

Query: 730 VNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHIS 789
           +NQ  ++G   L             YL+ Q      ++S     ++    +         
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 790 RQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLN-DGHLIHAVDL 848
                  +   RK            + +S     +         L      G+      L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 849 SQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGAD 908
            Q R         +  D       H                AA  G E+  R+L+    D
Sbjct: 219 IQAR------YDVNIKDYDGWTPLH---------------AAAHWGKEEACRILVENLCD 257

Query: 909 PKHSDHCGRNAFRVAAKSGHETVLRLLKQ 937
            +  +  G+ AF VA +     +  L K+
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.0 bits (180), Expect = 7e-15
 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 375 DKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSG 434
            K G TAL+VAA +G+ + +++L++A  ++N  D +GWTPL +A+  G     ++L+++ 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 435 ADVNCSDMGGRTALRAAAWG--GHLEV 459
            D+   +  G+TA   A     G+LE 
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
                    + LH   A+    +LK  L      D+ + D  G T L+ AAH G  +A +
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLK-LLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 396 ILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
           IL+E   ++   +  G T    A       ++  L +     N
Sbjct: 250 ILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
           +         AA S G    V  LL  GA ++  + +G T L  A    N+D+V  L++ 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705
           G               +    DN GW PLH AA  G+ ++   L+  GA V  V+++G  
Sbjct: 96  GA--------------NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141

Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRT 739
           PL +A ++    L++  + +   ++     +   
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVHYY 949
           A   G  + V  LL  GAD  +++  G  A   A    +  +++ L +   +     +  
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 950 YY 951
           + 
Sbjct: 107 WI 108

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (284), Expect = 2e-28
 Identities = 42/251 (16%), Positives = 89/251 (35%), Gaps = 26/251 (10%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLEL----------VDKHGQTALNVA 385
            T  ++ + +   +  + N      +F    + ++             VD+HG T L+  
Sbjct: 55  PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL 114

Query: 386 AHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS----AVVKLLLQSGADVNCSD 441
                ++ V+ L++ G+N  + D  G + L  A    ++        LL      +   D
Sbjct: 115 TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED 174

Query: 442 MGGRTAL----RAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
              RT L      +   G          + +  ++      + +  +E  +         
Sbjct: 175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 234

Query: 498 HADIVSSIL---EYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHED 554
              I+ ++         +N QD++G T L+++A       G   +V  LL+ GA     +
Sbjct: 235 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL-----GNISIVDALLDYGADPFIAN 289

Query: 555 REGMTPLLVAA 565
           + G+ P+   A
Sbjct: 290 KSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 6e-28
 Identities = 47/316 (14%), Positives = 92/316 (29%), Gaps = 41/316 (12%)

Query: 397 LLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH 456
           L     N N    +    L+   +     +   L    ++ N          +  ++   
Sbjct: 25  LPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSL 84

Query: 457 LEVTIVLGPLCVVKLLLAAGAHVNAA-DSEGRTALIASAYMGHADIVSSILEYDADINQQ 515
           L+         V         ++N   D  G T L     + + ++V  ++++ ++    
Sbjct: 85  LQE--------VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG 136

Query: 516 DNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI 575
           DN G +   V A+   ++       ++L      +  ED    T L           C  
Sbjct: 137 DNMGESC-LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-- 193

Query: 576 LLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGN 635
                               AAA       +  ++             +           
Sbjct: 194 -------------------SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 234

Query: 636 IDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
            D + + LD   I+  +             +D+ G T L+ AA  G+  +  ALL+ GA 
Sbjct: 235 KDSILENLDLKWIIANML----------NAQDSNGDTCLNIAARLGNISIVDALLDYGAD 284

Query: 696 VDQVDNDGRAPLILAA 711
               +  G  P+   A
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 41/269 (15%), Positives = 73/269 (27%), Gaps = 29/269 (10%)

Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD-QVDNDGRAPLILAAQDGH 715
              S       +      H +     +EV  A       ++  VD  G  PL       +
Sbjct: 60  NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN 119

Query: 716 YHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVE 775
             LV+  ++   +N     + G + L   +K+V                         + 
Sbjct: 120 LELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-------CLI 171

Query: 776 DLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLC 835
              +   T   HI             K         I+   +   +   + K        
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231

Query: 836 SLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGH 895
                 ++  +DL         + + +A D +     +               IAA+ G+
Sbjct: 232 GERKDSILENLDLKWI-----IANMLNAQDSNGDTCLN---------------IAARLGN 271

Query: 896 EDCVRLLLHYGADPKHSDHCGRNAFRVAA 924
              V  LL YGADP  ++  G       A
Sbjct: 272 ISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (234), Expect = 2e-22
 Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 26/243 (10%)

Query: 485 EGRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
           +G T L  +   G+   V  ++        +++  +N  +T L ++ +    S     V 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDK----SGRTPLWA 596
           +      A     DR G T   +A           LL++ A      +     G T L  
Sbjct: 62  AG-----ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 116

Query: 597 AASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGR 656
           A +      V LLL  GA +D +D +      + A + N   + QLL +           
Sbjct: 117 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN----- 171

Query: 657 QTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHY 716
                    +   G + LH A+  G   + R L+ +GA     +     PL++A      
Sbjct: 172 --------AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 223

Query: 717 HLV 719
            ++
Sbjct: 224 DIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (232), Expect = 3e-22
 Identities = 56/245 (22%), Positives = 90/245 (36%), Gaps = 21/245 (8%)

Query: 444 GRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVS 503
           G T L  A   G+L     L     V L    G  ++  ++  +T L   A +     V 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRL-----VNLFQQGGRELDIYNNLRQTPLHL-AVITTLPSVV 56

Query: 504 SILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLV 563
            +L          +      +  A    S      ++         ++  + +G+T L V
Sbjct: 57  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 116

Query: 564 AAFEGHRDVCEILLENEADQDHIDK-SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAE 622
           A     ++  ++LLE  AD D +D  SGR+PL  A      S V LLL  GA V+     
Sbjct: 117 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 176

Query: 623 GRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGH 682
           G + L  A+ +G + +V  L+  G               D   ++    TPL  A     
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGA--------------DSSLKNCHNDTPLMVARSRRV 222

Query: 683 EEVCR 687
            ++ R
Sbjct: 223 IDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (229), Expect = 1e-21
 Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 13/233 (5%)

Query: 378 GQTALNVAAHQGFVDAVQILL----EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           G T L++A  QG + AV  L+    + G  ++  +    TPL  A      +VV+LL+ +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           GA     D  G+TA   A                ++         + A + +G TAL  +
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLR-----ALLDSAAPGTLDLEARNYDGLTALHVA 117

Query: 494 AYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHE 553
                 + V  +LE  ADI+  D         S L     +    +V +LL+ GA V+ +
Sbjct: 118 VNTECQETVQLLLERGADIDAVDIKSGR----SPLIHAVENNSLSMVQLLLQHGANVNAQ 173

Query: 554 DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCV 606
              G + L  A+  G   +   L+ + AD    +    TPL  A S      +
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (218), Expect = 3e-20
 Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 13/234 (5%)

Query: 410 EGWTPLRSASWGGHSAVVKLLL----QSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
           +G TPL  A   G+   V  L+    Q G +++  +   +T L  A       V  +L  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
                          A D  G+TA   +        + ++L+  A               
Sbjct: 62  AGA---------SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 112

Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
           +     +++    V  +L         + + G +PL+ A       + ++LL++ A+ + 
Sbjct: 113 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 172

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVV 639
              SG + L +A+  G    V  L+  GA     +    T L VA ++  ID++
Sbjct: 173 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 3e-17
 Identities = 40/268 (14%), Positives = 68/268 (25%), Gaps = 47/268 (17%)

Query: 670 GWTPLHYAAIEGHEEVCRALL----EAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           G TPLH A ++G+      L+    + G ++D  +N  + PL LA       +V + +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 726 YEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN 785
             + +    H    A                                             
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRAL------------------------------ 92

Query: 786 PHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHA 845
              S       L         A +  +        + LL+                LIHA
Sbjct: 93  -LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 151

Query: 846 VDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHY 905
           V+ +            +  +      +              +  A+  G    VR L+  
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSA------------LHSASGRGLLPLVRTLVRS 199

Query: 906 GADPKHSDHCGRNAFRVAAKSGHETVLR 933
           GAD    +        VA       +LR
Sbjct: 200 GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 2e-16
 Identities = 53/232 (22%), Positives = 85/232 (36%), Gaps = 27/232 (11%)

Query: 518 DGRTALSVSALCVPSSDGYAKVVSILL----EKGAKVDHEDREGMTPLLVAAFEGHRDVC 573
           DG T L ++ +      G    V  L+    + G ++D  +    TPL +A       V 
Sbjct: 2   DGDTPLHIAVVQ-----GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 56

Query: 574 EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA----EGRTVLSV 629
            +L+   A    +D+ G+T    A      +C+  LL   A           +G T L V
Sbjct: 57  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 116

Query: 630 AAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRAL 689
           A      + V  LL+RG  +                    G +PL +A       + + L
Sbjct: 117 AVNTECQETVQLLLERGADIDA-------------VDIKSGRSPLIHAVENNSLSMVQLL 163

Query: 690 LEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           L+ GA V+     G + L  A+  G   LV   +    A+ + K+    T L
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPL 214

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 29/98 (29%), Positives = 46/98 (46%)

Query: 362 FLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG 421
            L    A    +  K G++ L  A     +  VQ+LL+ GAN+N     G + L SAS  
Sbjct: 128 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 187

Query: 422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV 459
           G   +V+ L++SGAD +  +    T L  A     +++
Sbjct: 188 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 3e-11
 Identities = 49/228 (21%), Positives = 85/228 (37%), Gaps = 36/228 (15%)

Query: 344 QSVLHKLCAENNINLLKTFLKSCEA--LDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
            + LH    + N+  +   +   +    +L++ +   QT L++A        V++L+ AG
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMG----GRTALRAAAWGGHL 457
           A+    D  G T    A        ++ LL S A            G TAL  A      
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 458 EVTIVL-------------------------GPLCVVKLLLAAGAHVNAADSEGRTALIA 492
           E   +L                           L +V+LLL  GA+VNA    G +AL +
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 183

Query: 493 SAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
           ++  G   +V +++   AD + ++    T L V+      S     ++
Sbjct: 184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR-----SRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVK 428
            G +AL+ A+ +G +  V+ L+ +GA+ +  +C   TPL  A       +++
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 32/237 (13%), Positives = 63/237 (26%), Gaps = 45/237 (18%)

Query: 702 DGRAPLILAAQDGHYHLVEMFLEQYE---ANVNQKSHDGRTALRVNMKNVTKLSFWYLLI 758
           DG  PL +A   G+   V   +  ++     ++  ++  +T L + +             
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL--- 58

Query: 759 QPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHS 818
                                    T         +             +   +     S
Sbjct: 59  -----------------------LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

Query: 819 FSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIIL 878
            +   LD++      L +L+        +  Q         +    D         R  L
Sbjct: 96  AAPGTLDLEARNYDGLTALHVAVNTECQETVQLL-------LERGADIDAVDIKSGRSPL 148

Query: 879 GSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLL 935
                      A +      V+LLL +GA+     + G +A   A+  G   ++R L
Sbjct: 149 ---------IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 196

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 93.7 bits (231), Expect = 3e-22
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 31/209 (14%)

Query: 394 VQILLEAGANINHT-DCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAA 452
           +  LL  GA +N T D  G T L  A+    +   K LL +GAD N  D  GRT L AA 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 453 WGGHLEVTIV-------------------------LGPLCVVKLLLAAGAHVNAADSEGR 487
               + V  +                         L    +V+ L+ A A +NAAD+ G+
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
           TAL  +A + + + V+ +L + A+ + QD+   T      L + + +G  +    LL+  
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDET-----PLFLAAREGSYEASKALLDNF 179

Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
           A  +  D     P  VA+   H D+  +L
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 86.8 bits (213), Expect = 8e-20
 Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 15/220 (6%)

Query: 426 VVKLLLQSGADVNCS-DMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADS 484
           V+  LL  GA++N + D  G T+L  AA     +           K LL AGA  N+ D+
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADA---------AKRLLDAGADANSQDN 54

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
            GRT L A+       +     +        + + R     + L + +      +V  L+
Sbjct: 55  TGRTPLHAAVAADAMGVF----QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 110

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
              A ++  D  G T L  AA   + +   ILL + A++D  D    TPL+ AA  G   
Sbjct: 111 TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 170

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD 644
               LL   A  +  D   R    VA+ + + D+V +LLD
Sbjct: 171 ASKALLDNFANREITDHMDRLPRDVASERLHHDIV-RLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 85.2 bits (209), Expect = 3e-19
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 50/223 (22%)

Query: 537 AKVVSILLEKGAKVDH-EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLW 595
           A+V+S LL +GA+++   D+ G T L +AA     D  + LL+  AD +  D +GRTPL 
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 596 AAASMGHASCVAL----------------------------------LLFWGAYVDTIDA 621
           AA +        +                                  L+   A ++  D 
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 121

Query: 622 EGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEG 681
            G+T L  AAA  N + VN LL                  +   +D+   TPL  AA EG
Sbjct: 122 SGKTALHWAAAVNNTEAVNILLMHHA--------------NRDAQDDKDETPLFLAAREG 167

Query: 682 HEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
             E  +ALL+  A  +  D+  R P  +A++  H+ +V   L+
Sbjct: 168 SYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVR-LLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.8 bits (169), Expect = 5e-14
 Identities = 30/94 (31%), Positives = 44/94 (46%)

Query: 370 DLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKL 429
           D+   D  G+TAL+ AA     +AV ILL   AN +  D +  TPL  A+  G     K 
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 174

Query: 430 LLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVL 463
           LL + A+   +D   R     A+   H ++  +L
Sbjct: 175 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.3 bits (165), Expect = 2e-13
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 387 HQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRT 446
                  V+ L+ A A+IN  D  G T L  A+   ++  V +LL   A+ +  D    T
Sbjct: 99  RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET 158

Query: 447 ALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSIL 506
            L  AA  G  E           K LL   A+    D   R     ++   H DIV  +L
Sbjct: 159 PLFLAAREGSYE---------ASKALLDNFANREITDHMDRLPRDVASERLHHDIV-RLL 208

Query: 507 E 507
           +
Sbjct: 209 D 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 32/253 (12%), Positives = 70/253 (27%), Gaps = 48/253 (18%)

Query: 684 EVCRALLEAGAKVD-QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALR 742
           +V   LL  GA+++  +D  G   L LAA+       +  L+      +Q +        
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT------- 55

Query: 743 VNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRK 802
                +        +    + +   +          T        ++ +   + L     
Sbjct: 56  -GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 114

Query: 803 IISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPS 862
            I+ A+N      H + +    +  +    +  + +         L    +         
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG------- 167

Query: 863 ATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRV 922
                                             +  + LL   A+ + +DH  R    V
Sbjct: 168 --------------------------------SYEASKALLDNFANREITDHMDRLPRDV 195

Query: 923 AAKSGHETVLRLL 935
           A++  H  ++RLL
Sbjct: 196 ASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 15/144 (10%)

Query: 603 ASCVALLLFWGAYVD-TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSL 661
           A  ++ LL  GA ++ T+D  G T L +AA     D   +LLD G               
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA-------------- 47

Query: 662 DEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
           D   +DN G TPLH A       V + LL   A             ++ A       +  
Sbjct: 48  DANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 107

Query: 722 FLEQYEANVNQKSHDGRTALRVNM 745
            L   +A++N   + G+TAL    
Sbjct: 108 DLITADADINAADNSGKTALHWAA 131

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 28/91 (30%), Positives = 40/91 (43%)

Query: 666 RDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
            D  G T LH AA     +  + LL+AGA  +  DN GR PL  A       + ++ L  
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 726 YEANVNQKSHDGRTALRVNMKNVTKLSFWYL 756
              N+N + HDG T L +  +   +     L
Sbjct: 79  RATNLNARMHDGTTPLILAARLAIEGMVEDL 109

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (204), Expect = 1e-18
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 20/226 (8%)

Query: 485 EGRTALIASAYMGHADIVSSILEY----DADINQQDNDGRTALSVSALCVPSSDGYAKVV 540
           +G + L  +       +   ++       A +N Q+N  +T L ++ +        A + 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 541 SILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEI-LLENEADQDHIDKSGRTPLWAAAS 599
           +    +           +                       +     + +G T L  A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 600 MGHASCVALLLFWGAY-VDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQT 658
            G+   V LL+  GA         GRT L +A    N D+V+ LL  G            
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----------- 169

Query: 659 GSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
              D       G++P           + + L +   +  Q+  +  
Sbjct: 170 ---DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 2e-15
 Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 13/219 (5%)

Query: 378 GQTALNVAAHQGFVDA----VQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQS 433
           G + L++A            ++ +    A +N  +    TPL  A       + + LL +
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 434 GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIAS 493
           G D    D  G T L  A   G L    VL   C         + + A +  G T L  +
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP---HLHSILKATNYNGHTCLHLA 118

Query: 494 AYMGHADIVSSILEYDAD-INQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDH 552
           +  G+  IV  ++   AD   Q+  +GRT     AL +        +VS+LL+ GA V+ 
Sbjct: 119 SIHGYLGIVELLVSLGADVNAQEPCNGRT-----ALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGR 591
              +G +P  +        + + L +   +   +     
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (178), Expect = 5e-15
 Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 8/214 (3%)

Query: 518 DGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILL 577
           DG + L ++ +         +V+  +    A ++ ++    TPL +A      ++ E   
Sbjct: 1   DGDSFLHLAIIH-EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE--- 56

Query: 578 ENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID 637
                            +   +  H +C    L     +            + A   N  
Sbjct: 57  ----ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 112

Query: 638 VVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD 697
               L      LG +      G+         G T LH A    + ++   LL+ GA V+
Sbjct: 113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 172

Query: 698 QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVN 731
           +V   G +P  L        + +   +    N+ 
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 206

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (171), Expect = 3e-14
 Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 13/210 (6%)

Query: 410 EGWTPLRSASWGGHSA----VVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGP 465
           +G + L  A      A    V++ +    A +N  +   +T L  A      E+   L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 466 LCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSV 525
                 L     +     +  +  L +   +  +     +       N   +        
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT------- 113

Query: 526 SALCVPSSDGYAKVVSILLEKGAK-VDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD 584
             L + S  GY  +V +L+  GA     E   G T L +A    + D+  +LL+  AD +
Sbjct: 114 -CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 172

Query: 585 HIDKSGRTPLWAAASMGHASCVALLLFWGA 614
            +   G +P               L     
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 14/191 (7%)

Query: 556 EGMTPLLVAAFEGHRDVC----EILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF 611
           +G + L +A     + +       +  + A  +  +   +TPL  A           LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGW 671
            G   +  D  G                 Q     + +   +          +  +  G 
Sbjct: 61  AGCDPELRDFRGN--------TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 112

Query: 672 TPLHYAAIEGHEEVCRALLEAGAKV-DQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
           T LH A+I G+  +   L+  GA V  Q   +GR  L LA    +  LV + L +  A+V
Sbjct: 113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADV 171

Query: 731 NQKSHDGRTAL 741
           N+ ++ G +  
Sbjct: 172 NRVTYQGYSPY 182

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 8e-09
 Identities = 25/246 (10%), Positives = 49/246 (19%), Gaps = 45/246 (18%)

Query: 670 GWTPLHYAAIEGH----EEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQ 725
           G + LH A I        EV R +    A ++  +N  + PL LA       + E  L  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 726 YEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTN 785
                 +               +        L    +     +   L      T ++   
Sbjct: 62  GCDPELRDFR--------GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 113

Query: 786 PHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHA 845
                  +     +   +   A+       +   +  L             L  G  ++ 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 846 VDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHY 905
           V                                          +          + L   
Sbjct: 174 VTYQGYSP---------------------------------YQLTWGRPSTRIQQQLGQL 200

Query: 906 GADPKH 911
             +   
Sbjct: 201 TLENLQ 206

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 8e-09
 Identities = 23/109 (21%), Positives = 45/109 (41%)

Query: 328 CSDTPVSRITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAH 387
           C+   +  I    + N      L + +    +   L S  A        +G+TAL++A  
Sbjct: 95  CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 154

Query: 388 QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
               D V +LL+ GA++N    +G++P +       + + + L Q   +
Sbjct: 155 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 4e-07
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANI-NHTDCEGWTPLRSASWGGHSAVVKLLLQSGA 435
           +G T L++A+  G++  V++L+  GA++     C G T L  A    +  +V LLL+ GA
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 436 DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA 477
           DVN     G +  +                  + + L     
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTR---------IQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 26/174 (14%), Positives = 52/174 (29%), Gaps = 12/174 (6%)

Query: 590 GRTPLWAAASMGHASCVA----LLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
           G + L  A      +        +    A+++  +   +T L +A      ++   LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRA 705
           G           T       +       +   +                 +   + +G  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI--------LKATNYNGHT 113

Query: 706 PLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQ 759
            L LA+  G+  +VE+ +        Q+  +GRTAL + +          LL  
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 167

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (190), Expect = 1e-16
 Identities = 55/237 (23%), Positives = 84/237 (35%), Gaps = 15/237 (6%)

Query: 413 TPLRSASWGGHSAVVKLLLQS-GADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKL 471
            PL  A        V+ LL S  + +   D  GR  L  +                +   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA---------HEITSF 52

Query: 472 LLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVP 531
           LL+   +VN  D    +             +  +        + D +  T   V+ L + 
Sbjct: 53  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 112

Query: 532 SSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI-DKSG 590
               + +V   L+E GA V  +D+    PL  AA  G   + E+L        +  DK G
Sbjct: 113 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 172

Query: 591 RTPLWAAASMGHASCVALLLF-WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
            TPL+ A + GH     LL+  +GA  D +D +G     VA    N  V    L+  
Sbjct: 173 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (188), Expect = 2e-16
 Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 13/237 (5%)

Query: 380 TALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVN 438
             L+ A  +     VQ LL +  + +   D +G  PL  +       +   LL    +VN
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 439 CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGH 498
             D    +          +    V                +N   ++G T L  +     
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEV----VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 117

Query: 499 ADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGM 558
            ++   ++E  A +  +D   +  L  +A                    + V+ +D++G 
Sbjct: 118 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG----LGKSAVNWQDKQGW 173

Query: 559 TPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGA 614
           TPL  A  EGH D   +L+E   A+ D +D  G      A    +       L    
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 15/238 (6%)

Query: 347 LHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINH 406
           LH+ C EN    ++  L S  +  L   D+ G+  L+ +      +    LL    N+N 
Sbjct: 4   LHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 407 TDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPL 466
            D    +             ++++          D+   T              +     
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----VGKKWF 118

Query: 467 CVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD-ADINQQDNDGRTALSV 525
            V + L+  GA V   D   +  L  +A +G   ++  +     + +N QD  G T L  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 526 SALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEAD 582
           +         +     +L+EK GA+ D  D +G     VA    +  V +  L N  D
Sbjct: 179 ALAEG-----HGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 3e-15
 Identities = 39/209 (18%), Positives = 63/209 (30%), Gaps = 26/209 (12%)

Query: 559 TPLLVAAFEGHRDVCEILLE-NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD 617
            PL  A  E      + LL    +     D+ GR PL  + S       + LL     V+
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTG------------------ 659
             D    +  +      ++  +  +             + T                   
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 660 ------SLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK-VDQVDNDGRAPLILAAQ 712
                     + +D     PLH AA  G  ++   L   G   V+  D  G  PL  A  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 713 DGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           +GH     + +E+Y A  +   + G  A 
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAE 210

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 5e-14
 Identities = 38/271 (14%), Positives = 70/271 (25%), Gaps = 46/271 (16%)

Query: 672 TPLHYAAIEGHEEVCRALLEA-GAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANV 730
            PLH A +E      + LL +  + + Q D DGR PL  +     + +    L + E   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 731 NQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISR 790
                D       ++            +                           P +++
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLY---------------------DRPLKPDLNK 100

Query: 791 QEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQ 850
              +    +   +          L  +  S  + D  +    +  +      +  +    
Sbjct: 101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 160

Query: 851 RRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLL-HYGADP 909
            +   +       T    +                       EGH D   LL+  YGA+ 
Sbjct: 161 GKSAVNWQDKQGWTPLFHA---------------------LAEGHGDAAVLLVEKYGAEY 199

Query: 910 KHSDHCGRNAFRVAAKSGHETVLRLLKQYAD 940
              D+ G  A  VA     +     L    D
Sbjct: 200 DLVDNKGAKAEDVALN--EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 336 ITMFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQ 395
           +   D +  + L    AE + +     ++   A + +LVD  G  A +VA ++      +
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA-EYDLVDNKGAKAEDVALNE---QVKK 220

Query: 396 ILLEAGAN 403
             L    +
Sbjct: 221 FFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 1/66 (1%)

Query: 889 IAAQEGHEDCVRLLL-HYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFVH 947
            A  E     V+ LL    +     D  GR     +       +   L    ++     +
Sbjct: 6   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65

Query: 948 YYYYYN 953
                 
Sbjct: 66  PDDSGW 71

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (149), Expect = 7e-12
 Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
             LL AA  G  D   IL+ N A     D  G +PL  AA  GH S   +LL  G   D 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
                RT L +AA++G+ ++V  LL  G               D   +D    T LH+A 
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGA--------------DVNAKDMLKMTALHWAT 108

Query: 679 IEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEM 721
              H+EV   L++ GA V       +    ++  +G+  L E+
Sbjct: 109 EHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (145), Expect = 3e-11
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 17/169 (10%)

Query: 441 DMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHAD 500
           D+G    L  AA  G  +          V++L+A GA     D  G + L  +A  GH  
Sbjct: 1   DLG--KKLLEAARAGQDDE---------VRILMANGAPFTT-DWLGTSPLHLAAQYGHFS 48

Query: 501 IVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTP 560
               +L      + +    RT L      + +S+G+A +V +LL+ GA V+ +D   MT 
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPL-----HMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103

Query: 561 LLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALL 609
           L  A    H++V E+L++  AD     K  +T    +   G+     +L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (142), Expect = 7e-11
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 15/167 (8%)

Query: 410 EGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVV 469
           +    L  A+  G    V++L+ +GA      +G      AA +G      ++L      
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-- 58

Query: 470 KLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC 529
                     +A     RT L  +A  GHA+IV  +L++ AD+N +D    T     AL 
Sbjct: 59  --------SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT-----ALH 105

Query: 530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL 576
             +   + +VV +L++ GA V  + +   T   ++   G+ D+ EIL
Sbjct: 106 WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILL 544
           +    L+ +A  G  D V  ++   A        G + L      + +  G+     +LL
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPL-----HLAAQYGHFSTTEVLL 54

Query: 545 EKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHAS 604
             G   D   +   TPL +AA EGH ++ E+LL++ AD +  D    T L  A    H  
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 605 CVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQL 642
            V LL+ +GA V T     +T   ++   GN D+   L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (130), Expect = 3e-09
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 15/164 (9%)

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
             L  AA  G  D V+IL+  GA        G +PL  A+  GH +  ++LL++G   + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
                RT L  AA  GH           +V++LL  GA VNA D    TAL  +    H 
Sbjct: 63  RTKVDRTPLHMAASEGH---------ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSIL 543
           ++V  +++Y AD++ Q    +TA  +S        G   +  IL
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDN-----GNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 39/156 (25%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGC 651
             L  AA  G    V +L+  GA   T    G +                 L        
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDW-LGTS--------------PLHLAAQYGHFS 48

Query: 652 LAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
                    +    R     TPLH AA EGH  +   LL+ GA V+  D      L  A 
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT 108

Query: 712 QDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKN 747
           +  H  +VE+   +Y A+V+ +S   +TA  +++ N
Sbjct: 109 EHNHQEVVELL-IKYGADVHTQSKFCKTAFDISIDN 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 11/54 (20%), Positives = 25/54 (46%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL 430
              TAL+ A      + V++L++ GA+++       T    +   G+  + ++L
Sbjct: 99  LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 890 AAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLK 936
           A +  H++ V LL+ YGAD        + AF ++  +G+E +  +L+
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 341 SKNQSVLHKLCA---ENNINLLKTFLKS----CEALDLELVDKHGQTALNVAA---HQGF 390
           +   + LH LC      +I  L           E + L    +  +TAL++A     +  
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 391 VDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRA 450
           +  V  L++   N++    +G T L       ++  +KLLL+  A +  ++  G T L  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 451 AAWGGHLEVTIVLGPLCVVKLLLAAGA 477
           A    H             +LL  A +
Sbjct: 121 AKRLKHEH---------CEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 4e-11
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 481 AADSEGRTALIASAYMGHADIVSSILEYDADINQQ------DNDGRTALSVSALCVPSSD 534
           A  +    +L  +        +        D+ ++           TAL ++        
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS--VDR 58

Query: 535 GYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPL 594
               +V  L++    +D +  +G T L       + +  ++LL  +A  +  ++SG TPL
Sbjct: 59  TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 118

Query: 595 WAAASMGHASCVALLLFWGA 614
             A  + H  C  LL    +
Sbjct: 119 DIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 1e-10
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 18/137 (13%)

Query: 464 GPLCVVKLLLAAGAHVNA------ADSEGRTALIASAYM---GHADIVSSILEYDADINQ 514
             +  +    A G  +              TAL  +          IV  +++   ++++
Sbjct: 17  RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK 76

Query: 515 QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCE 574
           Q   G TAL             A+ + +LL   A ++  +  G TPL +A    H    E
Sbjct: 77  QTGKGSTAL-----HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 131

Query: 575 ILLENEADQ----DHID 587
           +L +  + +     H++
Sbjct: 132 LLTQALSGRFNSHVHVE 148

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 24/152 (15%), Positives = 38/152 (25%), Gaps = 23/152 (15%)

Query: 553 EDREGMTPLLVAAFEGHRDVCEILLENEAD------QDHIDKSGRTPLWAAASM---GHA 603
           +    +  L  A              +  D        +  +   T L  A         
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 604 SCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDE 663
             V  L+     +D    +G T L       N + +  LL                    
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA--------------SI 107

Query: 664 QHRDNCGWTPLHYAAIEGHEEVCRALLEAGAK 695
           +  +  G TPL  A    HE     L +A + 
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 23/158 (14%)

Query: 587 DKSGRTPLWAAASMGHASCVALLLFWGAYVD------TIDAEGRTVLSVAAA---QGNID 637
             +    L  A        +      G  +              T L +A     + ++ 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 638 VVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD 697
           +V+ L+                  +   +   G T LHY  +  + E  + LL   A ++
Sbjct: 63  IVDFLVQNSG--------------NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 108

Query: 698 QVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSH 735
             +  G  PL +A +  H H  E+  +      N   H
Sbjct: 109 IANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
             L ++A  G  + ++S+L+ + ++N Q+  GRTAL V  L  P       +        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA----- 57

Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHA-SCV 606
              D +DR G   +  AA  G  D  + LLE +AD +  D  G  PL  AA  GH     
Sbjct: 58  -NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 116

Query: 607 ALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRG 646
            L+    + V   + +G T   +A   G  +VV+ +   G
Sbjct: 117 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
           + L   ++ G  + ++ LL+    V+ ++  G T L V           +L    A+ D 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLL-LRGANPDL 61

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
            D++G   +  AA  G    +  LL + A V+  D EG   L +AA +G++ VV  L+  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAG 693
                           +  HR++ G T    A + G  EV   +   G
Sbjct: 122 TAS-------------NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 3e-09
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 14/168 (8%)

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
             L  AA +G ++ +  LL+   N+N  +  G T L+    G      +LLL+       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA 499
              G      AA  G    +  +L                   +       +A+      
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQAD---------VNIEDNEGNLPLHLAAKEGHLR 113

Query: 500 DIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
            +   +    +++  +++ G TA  ++ L      G  +VVS++   G
Sbjct: 114 VVEFLVKHTASNVGHRNHKGDTACDLARLY-----GRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 4e-09
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 413 TPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLL 472
             L SA+  G    +  LLQ+  +VN  +  GRTAL+    G       +L         
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA----- 57

Query: 473 LAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPS 532
                + +  D  G   +  +A  G  D + ++LE+ AD+N +DN+G   L         
Sbjct: 58  -----NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH----LAAK 108

Query: 533 SDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN 579
                 V  ++    + V H + +G T   +A   G  +V  ++  N
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 6e-09
 Identities = 45/169 (26%), Positives = 62/169 (36%), Gaps = 16/169 (9%)

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
             L +AA  G LE          +  LL    +VNA +  GRTAL              +
Sbjct: 3   NELASAAARGDLEQ---------LTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLL 53

Query: 506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA 565
           L       +                 +  G+   +  LLE  A V+ ED EG  PL +AA
Sbjct: 54  LRGANPDLKDRTGFAVI------HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 107

Query: 566 FEGHRDVCEILLENEADQDHI-DKSGRTPLWAAASMGHASCVALLLFWG 613
            EGH  V E L+++ A      +  G T    A   G    V+L+   G
Sbjct: 108 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 7e-06
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 672 TPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR 704
             L  AA  G  E   +LL+    V+  +  GR
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGC 651
             L +AA+ G    +  LL     V+  +  GRT L V            LL        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP--- 59

Query: 652 LAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAA 711
                         +D  G+  +H AA  G  +  + LLE  A V+  DN+G  PL LAA
Sbjct: 60  ------------DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 107

Query: 712 QDGHYHLVEMFLEQYEANVNQKSHDGRTAL 741
           ++GH  +VE  ++   +NV  ++H G TA 
Sbjct: 108 KEGHLRVVEFLVKHTASNVGHRNHKGDTAC 137

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 884 GEKISIAAQEGHEDCVRLLLHYGADPKHSDHCGRN 918
           G +++ AA  G  + +  LL    +    +  GR 
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRT 36

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 558 MTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD 617
           +  LL ++ EG  D+ + ++    D    +  G T L  A   GH   V  L+ +G  V+
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYA 677
             D++G T L  AA+  N+ V   L++ G  +  +            + D          
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-----------TYSDMQTAADKCEE 110

Query: 678 AIEGHEEVCRALLEAGAKV 696
             EG+ +  + L     K+
Sbjct: 111 MEEGYTQCSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
             L  ++  G  ++         V+ ++      +  + EG TAL  +   GH +IV  +
Sbjct: 3   ALLLDSSLEGEFDL---------VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 53

Query: 506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKV---DHEDREGMTPLL 562
           +++  ++N  D+DG T L        +S    +V   L+E GA V    + D +      
Sbjct: 54  VQFGVNVNAADSDGWTPL-----HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 108

Query: 563 VAAFEGHRDVCEILLENEA 581
               EG+    + L   + 
Sbjct: 109 EEMEEGYTQCSQFLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 17/137 (12%)

Query: 592 TPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGC 651
             L  ++  G    V  +++                       +  +             
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPS--------------LPNDEGITALHNAVCAGHTE 48

Query: 652 LAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGR---APLI 708
           +        ++    D+ GWTPLH AA   + +VC+ L+E+GA V  +        A   
Sbjct: 49  IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 108

Query: 709 LAAQDGHYHLVEMFLEQ 725
              ++G+    +     
Sbjct: 109 EEMEEGYTQCSQFLYGV 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC 439
             L  ++ +G  D VQ ++    + +  + EG T L +A   GH+ +VK L+Q G +VN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 440 SDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTA--LIASAYM 496
           +D  G T L  AA   +         + V K L+ +GA V A   S+ +TA         
Sbjct: 63  ADSDGWTPLHCAASCNN---------VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 113

Query: 497 GHADIVSSILEYDADI 512
           G+      +      +
Sbjct: 114 GYTQCSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 526 SALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
           + L   S +G   +V  ++ +       + EG+T L  A   GH ++ + L++   + + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTID-AEGRTVLSVAAA--QGNIDVVNQL 642
            D  G TPL  AAS  +      L+  GA V  +  ++ +T         +G       L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 643 LDRGMILG 650
                 +G
Sbjct: 123 YGVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 377 HGQTALNVAAHQGFVDAVQILLEAGANIN---HTDCEGWTPLRSASWGGHSAVVKLLLQS 433
            G T L+ AA    V   + L+E+GA +    ++D +           G++   + L   
Sbjct: 66  DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125

Query: 434 GADV 437
              +
Sbjct: 126 QEKM 129

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 37/167 (22%), Positives = 53/167 (31%), Gaps = 17/167 (10%)

Query: 559 TPLLVAAFEGHRDVCEILLENE-ADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVD 617
             L  AA  G       LL  E    D +++ G+T L        A  + LL    +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 618 TIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYA 677
              +    V   A       +   +     +                  D  G  P+H A
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADV---------------NVPDGTGALPIHLA 108

Query: 678 AIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE 724
             EGH  V    L A + + + D  G  PL LA Q G   LV++   
Sbjct: 109 VQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 17/169 (10%)

Query: 378 GQTALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGAD 436
               L+ AA +G V  V+ LL     + +  +  G T L+   +G  +            
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI----------A 51

Query: 437 VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYM 496
           +     G    ++  +    +      G L  +K+L+  GA VN  D  G   +  +   
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 497 GHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE 545
           GH  +VS +    +D++++D  G T L ++        G   +V IL  
Sbjct: 112 GHTAVVSFLAAE-SDLHRRDARGLTPLELALQR-----GAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 527 ALCVPSSDGYAKVVSILLEK-GAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDH 585
            L   ++ G  + V  LL +     D  +R G T L      G   +   LL+  A  + 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNV 63

Query: 586 IDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR 645
            D SG +P+  AA  G    + +L+  GA V+  D  G   + +A  +G+  VV+ L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 646 GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLE 691
             +                 RD  G TPL  A   G +++   L  
Sbjct: 124 SDL---------------HRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 12/166 (7%)

Query: 342 KNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAG 401
           +    L    A  ++  ++  L        + +++ G+TA       G       LL+ G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELV-HPDALNRFGKTA-LQVMMFGSTAIALELLKQG 58

Query: 402 ANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTI 461
           A+ N  D  G +P+  A+  G    +K+L++ GADVN  D  G   +  A   GH     
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH----- 113

Query: 462 VLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILE 507
                  V   LAA + ++  D+ G T L  +   G  D+V  +  
Sbjct: 114 -----TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/62 (19%), Positives = 18/62 (29%)

Query: 338 MFDSKNQSVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQIL 397
             +  + +    +                   DL   D  G T L +A  +G  D V IL
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 398 LE 399
             
Sbjct: 153 QG 154

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-07
 Identities = 25/136 (18%), Positives = 32/136 (23%), Gaps = 14/136 (10%)

Query: 557 GMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYV 616
               L  AA  G  +    LLE  A+ +  +  GR P+             LLL      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 617 DTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHY 676
                                                            RD  G  P+  
Sbjct: 63  CADP--------------ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 108

Query: 677 AAIEGHEEVCRALLEA 692
           A   GH +V R L  A
Sbjct: 109 AEELGHRDVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 9e-05
 Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 446 TALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSI 505
             L  AA  G +E          V+ LL AGA+ NA +S GR  +              +
Sbjct: 5   DWLATAAARGRVE---------EVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLL 55

Query: 506 LEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAA 565
           L                     +   + +G+   + +L   GA++D  D  G  P+ +A 
Sbjct: 56  LHGAEPNCADPATLTR-----PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 110

Query: 566 FEGHRDVCEILLE 578
             GHRDV   L  
Sbjct: 111 ELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 32/121 (26%), Positives = 47/121 (38%)

Query: 524 SVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQ 583
           S   L   ++ G  + V  LLE GA  +  +  G  P+ V      R    +LL      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 584 DHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLL 643
                +   P+  AA  G    + +L   GA +D  DA GR  + +A   G+ DV   L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 644 D 644
            
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 488 TALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG 547
             L  +A  G  + V ++LE  A+ N  ++ GR  + V  +          +        
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 548 AKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVA 607
                              EG  D   +L    A  D  D  GR P+  A  +GH     
Sbjct: 65  DPATLTRPVHDAA-----REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 608 LLL 610
            L 
Sbjct: 120 YLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 7e-04
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADV 437
               L  AA +G V+ V+ LLEAGAN N  +  G  P++    G       LLL      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 438 NCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMG 497
                     +  AA  G L+  +VL               ++  D+ GR  +  +  +G
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGA---------RLDVRDAWGRLPVDLAEELG 113

Query: 498 HADIV 502
           H D+ 
Sbjct: 114 HRDVA 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (104), Expect = 3e-06
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT 618
              + A   G  D  +  +    D +   + GR PL  AA  G    +  LL  GA ++ 
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAA 678
            D    T L  A  +G++  V  LL +G               D+  +   G T L    
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGA--------------DKTVKGPDGLTALEAT- 108

Query: 679 IEGHEEVCRALLE 691
                +  +ALL+
Sbjct: 109 ---DNQAIKALLQ 118

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 41 LIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD 86
          L IG PGSGK+T  +E +  +       + + R+ ++A+     Y 
Sbjct: 6  LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYK 51

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCK 55
          K+   RE    +L   L +   +   +   A ++G PG+GKT   +
Sbjct: 16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	978
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.75
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.91
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.89
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.63
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.51
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.36
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.36
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.32
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.27
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.25
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.14
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.13
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.01
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.79
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.71
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.49
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.38
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.34
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.25
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.94
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.83
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.68
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.6
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.58
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.53
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.46
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.45
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.44
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.32
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.29
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.28
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.12
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.11
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.08
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.98
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.96
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.9
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.84
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.83
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.77
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.66
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.66
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.65
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.55
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.47
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.45
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.44
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.41
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.4
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.31
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.18
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.94
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.89
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.85
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.83
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.74
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.67
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.66
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.6
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.53
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.47
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.35
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.33
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.31
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.23
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.21
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.21
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.18
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.05
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.01
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.96
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.9
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.88
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.83
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.62
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.6
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.58
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.43
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.4
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.19
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.14
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.09
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.8
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.35
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.64
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.6
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	91.39
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.33
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.12
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	91.11
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	91.02
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.93
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	90.88
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	90.78
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	90.73
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.04
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	90.03
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	90.03
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	89.89
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	89.82
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	89.74
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.64
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.56
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	89.49
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.37
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	89.31
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	88.99
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	88.81
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.65
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	88.42
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.16
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.14
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	88.05
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.98
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	87.9
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	87.88
d1okkd2	207	GTPase domain of the signal recognition particle r	87.85
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.64
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	87.52
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	87.1
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	86.98
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.91
d1ls1a2	207	GTPase domain of the signal sequence recognition p	86.89
d1tdha3	44	Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapi	86.16
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	86.08
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	86.02
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	85.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	85.87
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.85
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	85.84
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	85.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	85.44
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	85.36
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	85.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	85.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	84.94
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	84.59
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	84.52
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	84.27
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	83.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	83.84
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	83.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	83.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	83.8
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	83.77
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.51
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	83.44
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	83.4
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	83.39
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	83.32
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	83.32
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	83.29
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	82.71
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	82.63
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	82.59
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	82.52
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	82.34
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	82.32
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	82.26
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	81.97
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	81.75
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	81.73
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	81.58
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	81.34
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	81.32
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	81.29
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	81.24
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	81.18
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	80.86
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	80.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	80.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	80.51
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	80.45
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	80.14

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-47  Score=425.55  Aligned_cols=382  Identities=31%  Similarity=0.409  Sum_probs=366.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      ||||.||..|++++|++|++  .|.+++..|..|.||||+||..|+.++|++|+++|++++.++..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~--~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH--TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            89999999999999999999  7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS  504 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  504 (978)
                      +++++|+..+.+..........++..+...+....         .......+...+..+..+.++++.|+..++.+++++
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~  150 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVET---------VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  150 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhccccc---------ccccccccccccccccccchHHHHHHHcCCHHHHHH
Confidence            99999999998888888888899999999888777         777788888888889999999999999999999999


Q ss_pred             HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy9384         505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQD  584 (978)
Q Consensus       505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~  584 (978)
                      |+++|++++..+.++.+||++|+     ..++.+++++|+.+|++++..+..+.+|++.++...+.++...++..+....
T Consensus       151 ll~~~~~~~~~~~~~~~~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~  225 (408)
T d1n11a_         151 LLERDAHPNAAGKNGLTPLHVAV-----HHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN  225 (408)
T ss_dssp             HHHTTCCTTCCCSSCCCHHHHHH-----HTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHcCCCCCcCCCcCchHHHHHH-----HcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccccc
Confidence            99999999999999999999999     6789999999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCcc
Q psy9384         585 HIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ  664 (978)
Q Consensus       585 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  664 (978)
                      ..+..+.||++.|+..+..+++++++..+...+..+..|.||++.|+..++.+++++|+++|              .+++
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g--------------~~~~  291 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG--------------VMVD  291 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT--------------CCTT
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCC--------------Cccc
Confidence            88889999999999999999999999999999999999999999999999999999999999              7888


Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHH
Q psy9384         665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVN  744 (978)
Q Consensus       665 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a  744 (978)
                      ..+..+.||||.++..++.++++++++.|++++.+|..|.||||+|+++|+.++|++|+++ |++++.+|.+|.||||+|
T Consensus       292 ~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHH
T ss_pred             cccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHH
Confidence            8888999999999999999999999999999999999999999999999999999999997 999999999999999999


Q ss_pred             HhcccchhHHHHHHHHHH
Q psy9384         745 MKNVTKLSFWYLLIQPLL  762 (978)
Q Consensus       745 ~~~~~~~~~~~~~~~~Ll  762 (978)
                      +     ..++.+++++|.
T Consensus       371 ~-----~~~~~~iv~~L~  383 (408)
T d1n11a_         371 K-----RLGYISVTDVLK  383 (408)
T ss_dssp             H-----HTTCHHHHHHHH
T ss_pred             H-----HcCCHHHHHHHH
Confidence            9     889999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-47  Score=424.14  Aligned_cols=385  Identities=31%  Similarity=0.404  Sum_probs=368.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384         379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE  458 (978)
Q Consensus       379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  458 (978)
                      .||||+||..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHH
Q psy9384         459 VTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAK  538 (978)
Q Consensus       459 i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  538 (978)
                      +         +++|+..+.+.........+++..+...+...........+......+..+.++++.++     ..++.+
T Consensus        81 ~---------~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-----~~~~~~  146 (408)
T d1n11a_          81 M---------VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA-----KYGKVR  146 (408)
T ss_dssp             H---------HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-----HTTCHH
T ss_pred             H---------HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHH-----HcCCHH
Confidence            9         99999999888888888889999999999999999999999999999999999999998     678999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcc
Q psy9384         539 VVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDT  618 (978)
Q Consensus       539 ~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  618 (978)
                      ++++|++.|.+++..+..+.+||++|+..++.+++++|+++|++++..+..+.+|++.+......++...++..+.....
T Consensus       147 ~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~  226 (408)
T d1n11a_         147 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA  226 (408)
T ss_dssp             HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC
Q psy9384         619 IDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ  698 (978)
Q Consensus       619 ~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  698 (978)
                      .+..+.||++.|+..++.++++++++.+              ...+..+..|.||++.|+..++.+++++|+++|++++.
T Consensus       227 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~  292 (408)
T d1n11a_         227 ESVQGVTPLHLAAQEGHAEMVALLLSKQ--------------ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA  292 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTT--------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             cCCCCCCHHHHHHHhCcHhHhhhhhccc--------------cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccc
Confidence            8999999999999999999999999988              67777888999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccc
Q psy9384         699 VDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLF  778 (978)
Q Consensus       699 ~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  778 (978)
                      .+..+.|||+.++..++.++++++++. |++++.+|.+|.||||.|+     ..++.+++++|+    ++|     ++++
T Consensus       293 ~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d~~G~T~Lh~A~-----~~g~~~iv~~Ll----~~G-----Ad~n  357 (408)
T d1n11a_         293 TTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAA-----QQGHTDIVTLLL----KNG-----ASPN  357 (408)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHH----HTT-----CCSC
T ss_pred             ccccccccchhhcccCcceeeeeeccc-cccccccCCCCCCHHHHHH-----HcCCHHHHHHHH----HCC-----CCCC
Confidence            999999999999999999999999997 9999999999999999999     899999999999    999     9999


Q ss_pred             cccCCCCccchHHHhhchHHHHHHHHHh
Q psy9384         779 TKFSTTNPHISRQEYKKRLHILRKIISI  806 (978)
Q Consensus       779 ~~~~~g~t~l~~a~~~g~~~i~~~l~~~  806 (978)
                      .+|.+|.|||++|+..|+.+++++|...
T Consensus       358 ~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         358 EVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             CCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999987543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.4e-31  Score=275.57  Aligned_cols=272  Identities=32%  Similarity=0.417  Sum_probs=213.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEAGANINHTD-CEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      +.|+||.|++.|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++|++.+......+..+.+|.++++..+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            4689999999999999999999999998765 468999999999999999999999999888888889999999999999


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCCh
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY  536 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  536 (978)
                      .+.         ..+++....+....+..+.++++.|+..++...+..++....+++........               
T Consensus        85 ~~~---------~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  140 (285)
T d1wdya_          85 VKL---------LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED---------------  140 (285)
T ss_dssp             HHH---------HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH---------------
T ss_pred             ccc---------cchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhh---------------
Confidence            888         88888888777777888999999999999999999999987766543321100               


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHc----CCHHHHHHHHH
Q psy9384         537 AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASM----GHASCVALLLF  611 (978)
Q Consensus       537 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~----~~~~~v~~Ll~  611 (978)
                         .          ......|.|||++|+..|+.+++++|+++ |++++..+..+.++...+...    +..+++++|++
T Consensus       141 ---~----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~  207 (285)
T d1wdya_         141 ---Q----------ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD  207 (285)
T ss_dssp             ---H----------HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred             ---h----------hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH
Confidence               0          01234577899999999999999998865 788888888787776655443    23457777777


Q ss_pred             CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHH
Q psy9384         612 WGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR-GMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALL  690 (978)
Q Consensus       612 ~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  690 (978)
                      +|++++.++..|.||||.|+..|+.+++++|++. |              .+++.+|..|.||||+|++.|+.+++++|+
T Consensus       208 ~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g--------------~din~~d~~G~TpL~~A~~~~~~eiv~~Ll  273 (285)
T d1wdya_         208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH--------------IEINDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC--------------CCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            7777777777777777777777777777777764 4              566667777777777777777777777777


Q ss_pred             hCCCCCCCCC
Q psy9384         691 EAGAKVDQVD  700 (978)
Q Consensus       691 ~~g~~~~~~d  700 (978)
                      ++||++|..|
T Consensus       274 ~~GAd~n~~d  283 (285)
T d1wdya_         274 KRGASTDCGD  283 (285)
T ss_dssp             HHSSCSCCSS
T ss_pred             HCCCCCCccc
Confidence            7777777665

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-31  Score=265.43  Aligned_cols=218  Identities=30%  Similarity=0.435  Sum_probs=156.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      +.++.+|..|+++.++.++.. .+.+++.+|..|+||||+||..|+.+++++|++.+......+..+.++++.|+..|+.
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~-~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHh-CCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            567777777887777777664 4566777777778888888888888888877777777777777777777777777777


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS  504 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  504 (978)
                      +++++|+++|++++..+..|.||||+|+..|+.++         +++|+++|++++..+..+.|||++|+..++.+++++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~---------~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI---------AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHH---------HHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhh
Confidence            77777777777777777777777777777777777         777777777777777777777777777777777777


Q ss_pred             HHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy9384         505 ILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLE  578 (978)
Q Consensus       505 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~  578 (978)
                      |++.+.+++..+..|+|||+.|+     ..++.+++++|++.|++++.+|..|.|||++| ..|+.+++++|++
T Consensus       155 L~~~~~~i~~~d~~g~TpL~~Aa-----~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         155 LLYYKASTNIQDTEGNTPLHLAC-----DEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             hccccceeeeccCCCCceecccc-----ccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            77777777666666666666666     45556666666666666666666666666655 3455566665553

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-31  Score=263.85  Aligned_cols=219  Identities=30%  Similarity=0.344  Sum_probs=180.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         378 GQTALNVAAHQGFVDAVQILL-EAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      +++.|+.+|..|+.+.|+.++ +.+..++.+|..|+||||+|+..|+.+++++|+..+.+.......+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            467899999999999887665 5567788999999999999999999999999999998888888888899999999999


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCCh
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGY  536 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  536 (978)
                      .++         +++|+++|++++..+..|.|||++|+..|+.+++++|+++|++++..+..+.|||++++     ..+.
T Consensus        83 ~~i---------~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~-----~~~~  148 (223)
T d1uoha_          83 DEI---------VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA-----AKGN  148 (223)
T ss_dssp             HHH---------HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTC
T ss_pred             cch---------hHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhh-----hcCC
Confidence            988         99999999999999999999999999999999999999998888887777777777777     5666


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384         537 AKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLF  611 (978)
Q Consensus       537 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  611 (978)
                      .+++++|.+.+.+++..+..|.||||.|+..|+.+++++|+++|++++..|..|+||||+| ..|+.+++++|++
T Consensus       149 ~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            7777777777777777777777777777777777777777777777777777777777766 3566677776654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-29  Score=265.90  Aligned_cols=267  Identities=31%  Similarity=0.437  Sum_probs=240.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhccCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy9384         343 NQSVLHKLCAENNINLLKTFLKSCEALDLELVD-KHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWG  421 (978)
Q Consensus       343 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~  421 (978)
                      +.|+|+.|+..|++++|++|++  .|.+++.++ ..|+||||+|+..|+.+++++|++.+...+..+..+.+|.++|+..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~--~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHH--CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            4589999999999999999999  899998765 4799999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCccc----------CCCCCcHHH
Q psy9384         422 GHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAA----------DSEGRTALI  491 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~----------~~~~~t~L~  491 (978)
                      +..+...++++...+....+..+.++++.|+..++...         +..++....+++..          ...|.|||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhh---------hhhhhhhcccccccccchhhhhhhcccCchHHH
Confidence            99999999999988877788889999999999999988         88888877665543          446889999


Q ss_pred             HHHHcCCHHHHHHHHHc-CCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q psy9384         492 ASAYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHR  570 (978)
Q Consensus       492 ~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~  570 (978)
                      +|+..|+.+++++|+++ |++++..+..+.++...+... ....+..+++++|+++|++++.++..|.||||.|++.|+.
T Consensus       154 ~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~  232 (285)
T d1wdya_         154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC-SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHhccCCCcccccCCCCccccccccc-ccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcH
Confidence            99999999999999975 899999999888887665432 2356677899999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCC
Q psy9384         571 DVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDA  621 (978)
Q Consensus       571 ~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  621 (978)
                      +++++|+++ |++++..+..|.||||+|++.|+.+++++|+++|+++|..|.
T Consensus       233 ~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999974 899999999999999999999999999999999999998763

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.2e-31  Score=274.77  Aligned_cols=243  Identities=21%  Similarity=0.149  Sum_probs=165.9

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHH
Q psy9384         665 HRDNCGWTPLHYAAIEGHEEVCRALLEAGAK---VDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTAL  741 (978)
Q Consensus       665 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L  741 (978)
                      ..+..|.||||+|+.+|+.+++++|+++|++   ++..|..|.||||+|+..|+.+++++|+++ |++++..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc-cccccccccccchhh
Confidence            4567899999999999999999999999988   567788999999999999999999999998 999999999999999


Q ss_pred             HHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhh
Q psy9384         742 RVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSE  821 (978)
Q Consensus       742 ~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~  821 (978)
                      ++|+     ..++.+++++|+    +.+     ......   ....+......-.           ......++.  ...
T Consensus        83 ~~A~-----~~~~~~~~~~Ll----~~~-----~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~~~--~~~  132 (255)
T d1oy3d_          83 HLAC-----RVRAHTCACVLL----QPR-----PSHPRD---ASDTYLTQSQDCT-----------PDTSHAPAA--VDS  132 (255)
T ss_dssp             HHHT-----TTTCHHHHHHHS----SSC-----CSSCCC---C-------------------------------------
T ss_pred             hhhh-----ccCchHHHHHHH----hhc-----cchhcc---cchhhhhHHhhhc-----------ccchHHHHH--HHh
Confidence            9999     889999999998    555     211111   0000000000000           000000000  000


Q ss_pred             hhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHH
Q psy9384         822 WLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRL  901 (978)
Q Consensus       822 ~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~  901 (978)
                      ......   .                            ........+..++.++ ..|    .||||+|+..|+.++|++
T Consensus       133 ~~~~~~---~----------------------------~~~~~~~~~~~in~~d-~~g----~TpLh~A~~~~~~~~v~~  176 (255)
T d1oy3d_         133 QPNPEN---E----------------------------EEPRDEDWRLQLEAEN-YDG----HTPLHVAVIHKDAEMVRL  176 (255)
T ss_dssp             ------------------------------------------CCCGGGGTTCCC-TTS----CCHHHHHHHTTCHHHHHH
T ss_pred             hcchhH---H----------------------------HHHHhhhcCccccccc-ccC----cccccccccccccccccc
Confidence            000000   1                            1112223344445555 566    778888888888888888


Q ss_pred             HHHcCCCCCCC-cccCccHHHHHHHcChHHHHHHHHHcCCCCcccc--cchhhhhhhhcChhHHHHHHHhhcCCCC
Q psy9384         902 LLHYGADPKHS-DHCGRNAFRVAAKSGHETVLRLLKQYADDSEYFV--HYYYYYNSAKSGHETVLRLLKQYADDIP  974 (978)
Q Consensus       902 Ll~~ga~~~~~-d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~~~--~~~~l~~A~~~~~~~~~~~L~~~~~~~~  974 (978)
                      |+++|++++.. +..|.||||+|++.|+.+++++|+++|++++...  |.|||+.|+..|+.+++++|+++|.+-|
T Consensus       177 Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~~  252 (255)
T d1oy3d_         177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP  252 (255)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             hhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            88888777653 5677888888888888888888888888777643  6788888888888888888888877644

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-30  Score=269.16  Aligned_cols=242  Identities=25%  Similarity=0.253  Sum_probs=174.5

Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy9384         373 LVDKHGQTALNVAAHQGFVDAVQILLEAGAN---INHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALR  449 (978)
Q Consensus       373 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~  449 (978)
                      ..+.+|.||||+||..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|||+
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            4567788888888888888888888888776   5567778888888888888888888888888888888888888888


Q ss_pred             HHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhc
Q psy9384         450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALC  529 (978)
Q Consensus       450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~  529 (978)
                      +|+..++.++         +++|++.+........   ..+..............                 .+....  
T Consensus        84 ~A~~~~~~~~---------~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~--  132 (255)
T d1oy3d_          84 LACRVRAHTC---------ACVLLQPRPSHPRDAS---DTYLTQSQDCTPDTSHA-----------------PAAVDS--  132 (255)
T ss_dssp             HHTTTTCHHH---------HHHHSSSCCSSCCCC----------------------------------------------
T ss_pred             hhhccCchHH---------HHHHHhhccchhcccc---hhhhhHHhhhcccchHH-----------------HHHHHh--
Confidence            8888888887         8888776544321111   01101000000000000                 000000  


Q ss_pred             cCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCC-CCCCCcHHHHHHHcCCHHHHHH
Q psy9384         530 VPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHI-DKSGRTPLWAAASMGHASCVAL  608 (978)
Q Consensus       530 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~-~~~~~t~L~~A~~~~~~~~v~~  608 (978)
                        ...............+.+++.++..|.||||+|+..++.+++++|++++++.+.. +..|.||||+|+..++.+++++
T Consensus       133 --~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~  210 (255)
T d1oy3d_         133 --QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL  210 (255)
T ss_dssp             -------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             --hcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHH
Confidence              0001111222233345667788899999999999999999999999999888754 5678999999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9384         609 LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGM  647 (978)
Q Consensus       609 Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~  647 (978)
                      |+++|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       211 Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999995

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=6.5e-29  Score=261.64  Aligned_cols=244  Identities=20%  Similarity=0.211  Sum_probs=200.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcc
Q psy9384         669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNV  748 (978)
Q Consensus       669 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~  748 (978)
                      .+.|+|+.|+..|+.++|++|+++|+++|..|..|.||||+|+.+|+.++|++|+++ +.+....+..+.+||+.++   
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a~---  114 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA---  114 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH---
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccc-ccccccccccccccccccc---
Confidence            456999999999999999999999999999999999999999999999999999997 9999999999999999999   


Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhhhhhhhhhccccc
Q psy9384         749 TKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFHHSFSEWLLDVKH  828 (978)
Q Consensus       749 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~  828 (978)
                        ..++.++++.|+    ++|     ...+..+..+.++++.|+..+..+.++.++............  ......... 
T Consensus       115 --~~~~~~~~~~l~----~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~~-  180 (291)
T d1s70b_         115 --SCGYLDIAEYLI----SQG-----AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK--EEERIMLRD-  180 (291)
T ss_dssp             --HHTCHHHHHHHH----HTT-----CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH--HHHHHHHHH-
T ss_pred             --cccccchhhccc----ccC-----cccccccccCccccccccccccchhccccccccccccccccc--ccccccccc-
Confidence              899999999999    999     888888889999999999999988888888654111111000  000000000 


Q ss_pred             ccchhhhcccCCCcccccccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHHcCCC
Q psy9384         829 CTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLHYGAD  908 (978)
Q Consensus       829 ~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~  908 (978)
                        ....+.                             .........+ ..|    .||||.|+..|+.+++++|+++|++
T Consensus       181 --~~~~~~-----------------------------~~~~~~~~~~-~~g----~t~L~~a~~~~~~~~~~~Ll~~g~d  224 (291)
T d1s70b_         181 --ARQWLN-----------------------------SGHINDVRHA-KSG----GTALHVAAAKGYTEVLKLLIQARYD  224 (291)
T ss_dssp             --HHHHHH-----------------------------HTCCCCCCCT-TTC----CCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             --chhhhc-----------------------------cccccccccc-CCC----CChhhHHHHcCChhhhcccccceec
Confidence              111111                             1112222222 566    9999999999999999999999999


Q ss_pred             CCCCcccCccHHHHHHHcChHHHHHHHHHcCCCCccc--ccchhhhhhhhcChhHHHHHHHhhc
Q psy9384         909 PKHSDHCGRNAFRVAAKSGHETVLRLLKQYADDSEYF--VHYYYYYNSAKSGHETVLRLLKQYA  970 (978)
Q Consensus       909 ~~~~d~~g~t~l~~A~~~~~~~~v~~L~~~g~~~~~~--~~~~~l~~A~~~~~~~~~~~L~~~~  970 (978)
                      +|.++..|.||||+|+..|+.++|++|+++|++++..  .|.|||++|++    +++++|.+..
T Consensus       225 in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence            9999999999999999999999999999999999985  48999999986    6777777654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.5e-29  Score=264.73  Aligned_cols=255  Identities=26%  Similarity=0.323  Sum_probs=212.6

Q ss_pred             CcHHHHHHH-hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH--------HhCCCCCCcCCCCCCcHHH
Q psy9384         379 QTALNVAAH-QGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLL--------LQSGADVNCSDMGGRTALR  449 (978)
Q Consensus       379 ~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~L--------l~~g~~~~~~~~~~~t~l~  449 (978)
                      .||||+|+. .|..++++.|.+.+++.... ..|+||||+||..|+.++|++|        ++.|+++|.++..|.||||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            367775554 57777777777777765443 3488999999999998887666        5679999999999999999


Q ss_pred             HHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCccCCCCCCChhhhh
Q psy9384         450 AAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYD---ADINQQDNDGRTALSVS  526 (978)
Q Consensus       450 ~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~~~t~l~~a  526 (978)
                      +|+..|+.++         +++|+++|++++.++..|.||++.|+..++.++++++...+   ..++..+....++.+.+
T Consensus        80 ~A~~~g~~~i---------v~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          80 LAVLARRRRL---------VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             HHHHHTCHHH---------HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             cccccccccc---------cccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence            9999999999         99999999999999999999999999999999999988754   34556667777777776


Q ss_pred             hhccCCCCChHHHHHHHHhCCCC--------CCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccCCCCCCCcHHHHH
Q psy9384         527 ALCVPSSDGYAKVVSILLEKGAK--------VDHEDREGMTPLLVAAFEGHRDVCEILL-ENEADQDHIDKSGRTPLWAA  597 (978)
Q Consensus       527 ~~~~~~~~~~~~~v~~Ll~~g~~--------~~~~~~~~~t~L~~a~~~~~~~iv~~Ll-~~g~~~~~~~~~~~t~L~~A  597 (978)
                      ...  ........+..+.+....        .+..+..|.|+|+.++..++.+++++++ ..+.+.+..+..|.||||.|
T Consensus       151 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A  228 (277)
T d2fo1e1         151 AHN--EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA  228 (277)
T ss_dssp             HHS--CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred             Hhc--ccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHH
Confidence            632  133455566666554322        3445667899999999999999998754 67888888999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9384         598 ASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDR  645 (978)
Q Consensus       598 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~  645 (978)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.
T Consensus       229 ~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         229 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999853

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.1e-29  Score=263.23  Aligned_cols=243  Identities=28%  Similarity=0.366  Sum_probs=211.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCC
Q psy9384         377 HGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGH  456 (978)
Q Consensus       377 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~  456 (978)
                      .+.|+|+.||..|+.++|++|+++|+++|..|..|.||||+|+..|+.++|++|+++|++....+..+.+||++++..++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccCCCCCCChhhhhhhccCCCCC
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEY-DADINQQDNDGRTALSVSALCVPSSDG  535 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~  535 (978)
                      .++         ++.|+++|+..+..+..+.+++++|+..+..+.++.++.. +.++........            ...
T Consensus       119 ~~~---------~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~------------~~~  177 (291)
T d1s70b_         119 LDI---------AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE------------RIM  177 (291)
T ss_dssp             HHH---------HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHH------------HHH
T ss_pred             cch---------hhcccccCcccccccccCccccccccccccchhcccccccccccccccccccc------------ccc
Confidence            999         9999999999999999999999999999999999999865 333221111000            011


Q ss_pred             hHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9384         536 YAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY  615 (978)
Q Consensus       536 ~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  615 (978)
                      .......+.....+....+..|.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad  257 (291)
T d1s70b_         178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD  257 (291)
T ss_dssp             HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            23344555556666667778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384         616 VDTIDAEGRTVLSVAAAQGNIDVVNQLLD  644 (978)
Q Consensus       616 ~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~  644 (978)
                      ++.+|..|.||||+|++    +++++|.+
T Consensus       258 v~~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         258 MEAVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             TTCCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             CCCcCCCCCCHHHHHHH----HHHHHHHH
Confidence            99999999999999975    46666654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=248.60  Aligned_cols=219  Identities=26%  Similarity=0.282  Sum_probs=123.5

Q ss_pred             cHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc---CCCCCCcHHHHHHhcC
Q psy9384         380 TALNVAAHQGFVDAVQILLEA-GANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNC---SDMGGRTALRAAAWGG  455 (978)
Q Consensus       380 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~---~~~~~~t~l~~A~~~~  455 (978)
                      +|||+||..|+.++|+.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..+.+|+++++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            566666666666666655553 455666666666666666666666666666666665542   3344555666666555


Q ss_pred             CceeeeeccchHHHHHHHHcCCCCc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCC
Q psy9384         456 HLEVTIVLGPLCVVKLLLAAGAHVN--AADSEGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSS  533 (978)
Q Consensus       456 ~~~i~~~~~~~~vv~~Ll~~g~~~~--~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  533 (978)
                      ..++         ++.++..+...+  ..+..+.++++.++..++.+++++|++.|...+..+..|+||+++++     .
T Consensus        82 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~-----~  147 (229)
T d1ixva_          82 NLEV---------VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-----S  147 (229)
T ss_dssp             CHHH---------HHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-----H
T ss_pred             cccc---------ccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhh-----h
Confidence            5555         555555544322  23344555666666666666666666555555555555555555555     3


Q ss_pred             CChHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384         534 DGYAKVVSILLEKG-AKVDHEDREGMTPLLVAAFEGHRDVCEILLE-NEADQDHIDKSGRTPLWAAASMGHASCVALLLF  611 (978)
Q Consensus       534 ~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll~-~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  611 (978)
                      .++.+++++|++.+ .+++.++..|.||||+|+..|+.+++++|++ .|++++.++..|.|||++|+   +.+++++|++
T Consensus       148 ~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~  224 (229)
T d1ixva_         148 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN  224 (229)
T ss_dssp             HTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHH
Confidence            44455555555544 3445555555666666666666666666554 35566656655666666554   2355566665


Q ss_pred             CCCC
Q psy9384         612 WGAY  615 (978)
Q Consensus       612 ~g~~  615 (978)
                      +|+|
T Consensus       225 ~g~d  228 (229)
T d1ixva_         225 NVVD  228 (229)
T ss_dssp             HCCC
T ss_pred             cCCC
Confidence            5554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.4e-28  Score=257.12  Aligned_cols=266  Identities=28%  Similarity=0.360  Sum_probs=184.4

Q ss_pred             cHHHHHH-HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHH
Q psy9384         413 TPLRSAS-WGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALI  491 (978)
Q Consensus       413 t~L~~A~-~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~  491 (978)
                      ||||+|+ ..|+.++++.|.+.+++... ...|.||||+|+.+|+.++++.+-... .+.+++.|+++|.+|.+|.||||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~-~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHE-AKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHH-HHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcc-hhHHHHcCCCccccCCCCCeeec
Confidence            6777544 35677778778787766543 245889999999999999944432221 34456778888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHcC
Q psy9384         492 ASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKG---AKVDHEDREGMTPLLVAAFEG  568 (978)
Q Consensus       492 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g---~~~~~~~~~~~t~L~~a~~~~  568 (978)
                      +|+..|+.+++++|+++|++++.++..|.|+++.++     ..++.+++.++...+   ..++..+....++...+...+
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA-----ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE  154 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH-----HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccccccccchh-----hhcchhhhhhhhhcccccccccccccccchhHHHHHhcc
Confidence            888888888888888888887777777777777766     455666666665443   233344444555555555444


Q ss_pred             CHH---HHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH-
Q psy9384         569 HRD---VCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLD-  644 (978)
Q Consensus       569 ~~~---iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~-  644 (978)
                      ..+   .+..+.+........                         .....+..+..|.|+||.++..++.+++++++. 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~  209 (277)
T d2fo1e1         155 GRDQVASAKLLVEKGAKVDYD-------------------------GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE  209 (277)
T ss_dssp             STTHHHHHHHHHHHTCCSSCC-------------------------SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccc-------------------------ccccccccccCCCCcccccccccccccccccccc
Confidence            322   222222221111000                         011233456678888999988888888887654 


Q ss_pred             CCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHh
Q psy9384         645 RGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLE  724 (978)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~  724 (978)
                      .+              .+.+.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+++|+.++|++|++
T Consensus       210 ~~--------------~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         210 KG--------------SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SC--------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cc--------------ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            44              6677788889999999999999999999999999999999999999999999999999998875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.9e-28  Score=244.79  Aligned_cols=220  Identities=28%  Similarity=0.346  Sum_probs=202.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHc
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANIN---HTDCEGWTPLRSASWG  421 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~~t~L~~A~~~  421 (978)
                      +|||+||..|+.+.++.|++. .+.+++.+|.+|.||||+|+..|+.+++++|+++|++++   ..+..|.+|+++|+..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH-CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            799999999999999999985 456888999999999999999999999999999999976   4567899999999999


Q ss_pred             CCHHHHHHHHhCCCC--CCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q psy9384         422 GHSAVVKLLLQSGAD--VNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHA  499 (978)
Q Consensus       422 g~~~iv~~Ll~~g~~--~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~  499 (978)
                      +..++++.++..+..  ....+..+.++++.++..++.++         +++|++.|...+..+..|.|||++|+..|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~  151 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV---------SQFLIENGASVRIKDKFNQIPLHRAASVGSL  151 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhh---------hhhhhhhcccccccCCCCCCccchhhhcccc
Confidence            999999999998864  44456778899999999999998         9999999999999999999999999999999


Q ss_pred             HHHHHHHHcC-CCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy9384         500 DIVSSILEYD-ADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLE-KGAKVDHEDREGMTPLLVAAFEGHRDVCEILL  577 (978)
Q Consensus       500 ~~v~~Ll~~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~Ll  577 (978)
                      +++++|++.+ .+++..+..|.||||+|+     ..++.+++++|++ .|++++.++..|.|||++|+   +.+++++|+
T Consensus       152 ~~~~~Ll~~~~~~in~~d~~g~TpLh~A~-----~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll  223 (229)
T d1ixva_         152 KLIELLCGLGKSAVNWQDKQGWTPLFHAL-----AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFL  223 (229)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHH
T ss_pred             cccccccccccccccccccccCCchhhhc-----ccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHH
Confidence            9999999987 678899999999999999     6899999999996 59999999999999999998   458999999


Q ss_pred             hCCCC
Q psy9384         578 ENEAD  582 (978)
Q Consensus       578 ~~g~~  582 (978)
                      ++|+|
T Consensus       224 ~~g~d  228 (229)
T d1ixva_         224 NNVVD  228 (229)
T ss_dssp             HHCCC
T ss_pred             HcCCC
Confidence            99986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-25  Score=223.27  Aligned_cols=192  Identities=28%  Similarity=0.326  Sum_probs=150.2

Q ss_pred             CCchHHHHHHHcCCHHHHH----HHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy9384         342 KNQSVLHKLCAENNINLLK----TFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRS  417 (978)
Q Consensus       342 ~~~~~l~~a~~~~~~~~v~----~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~  417 (978)
                      +|.||||+|+..|+.+++.    ++..  .+.+++..|..|+||||+||..|+.+++++|++.|++++..|..|.|||++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~--~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHh--CCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence            4778888888888865444    4444  567788888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccC-CCCCcHH
Q psy9384         418 ASWGGHSAVVKLLLQSGADVN------CSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAAD-SEGRTAL  490 (978)
Q Consensus       418 A~~~g~~~iv~~Ll~~g~~~~------~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~-~~~~t~L  490 (978)
                      |+..|+.++++.|++.+....      .....+.||++.|+..++.++         +++|+..|+.++..+ ..|.|||
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---------~~~l~~~~~~~~~~~~~~G~T~L  149 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI---------VELLVSLGADVNAQEPCNGRTAL  149 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH---------HHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhh---------eeeecccCcccccccccCCCCcc
Confidence            888888888888888764432      233456788888888888887         888888888777654 4678888


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCC
Q psy9384         491 IASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAK  549 (978)
Q Consensus       491 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~  549 (978)
                      |.|+..|+.+++++|+++|++++.++..|.|||++|+     ..++.+++++|++.+.+
T Consensus       150 ~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~-----~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         150 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW-----GRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT-----TSSCHHHHHHHHTTSCG
T ss_pred             ccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHH-----HCCCHHHHHHHHHcCCc
Confidence            8888888888888888888888888888888888887     66788888888877544

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=222.76  Aligned_cols=193  Identities=24%  Similarity=0.216  Sum_probs=155.8

Q ss_pred             CCCCHHHHHHHcCCH----HHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q psy9384         556 EGMTPLLVAAFEGHR----DVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA  631 (978)
Q Consensus       556 ~~~t~L~~a~~~~~~----~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~  631 (978)
                      +|.||||+|+..|+.    ++++++...++++|..+..|+||||+|+..++.+++++|++.|++++..+..|.|||+.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            477888888888875    4555666778888888888889999988888888888888888888888888889999999


Q ss_pred             HcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH
Q psy9384         632 AQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVD-NDGRAPLILA  710 (978)
Q Consensus       632 ~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A  710 (978)
                      ..++.++++.|++.+....        ...........|.||||.|+..++.+++++|+..|+.++..+ ..|.||||+|
T Consensus        81 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPH--------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTS--------SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccccchhhhhccccc--------ccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccc
Confidence            8888899888888764221        112333445567899999999999999999999988888765 4689999999


Q ss_pred             HHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHH
Q psy9384         711 AQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLL  762 (978)
Q Consensus       711 ~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll  762 (978)
                      ++.|+.+++++|+++ |++++.+|.+|+||||+|+     ..++.+++++|+
T Consensus       153 ~~~g~~~~v~~Ll~~-gad~~~~~~~G~tpl~~A~-----~~~~~~~~~~l~  198 (221)
T d1iknd_         153 VDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTW-----GRPSTRIQQQLG  198 (221)
T ss_dssp             HHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCT-----TSSCHHHHHHHH
T ss_pred             cccccHHHHHHHHhc-CCcccccCCCCCCHHHHHH-----HCCCHHHHHHHH
Confidence            999999999999986 9999999999999999999     788899999888

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=1.3e-24  Score=215.80  Aligned_cols=120  Identities=33%  Similarity=0.380  Sum_probs=76.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCC
Q psy9384         589 SGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDN  668 (978)
Q Consensus       589 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  668 (978)
                      .+.++.+.+.........+.|...+.+++..+..|.|||+.++..+..++++.+++.+              .+++..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~--------------~~~~~~d~  154 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH--------------ANRDAQDD  154 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT--------------CCTTCCCT
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccc--------------cccccccc
Confidence            3445555555555555566666666666666666666666666666666666666666              45555666


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q psy9384         669 CGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMF  722 (978)
Q Consensus       669 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~L  722 (978)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+++|+.++|++|
T Consensus       155 ~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            666666666666666666666666666666666666666666666666666654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-24  Score=215.16  Aligned_cols=222  Identities=23%  Similarity=0.285  Sum_probs=171.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy9384         485 EGRTALIASAYMGHADIVSSILEYDADINQQDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVA  564 (978)
Q Consensus       485 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a  564 (978)
                      +|.||||+|+..|+.+++++|++                                  .+.+.|++++..+..|.||||+|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~----------------------------------~~~~~g~~in~~d~~g~TpL~~A   47 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVN----------------------------------LFQQGGRELDIYNNLRQTPLHLA   47 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHH----------------------------------HHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHH----------------------------------HHHHCCCCCCccCCCCCccceeh
Confidence            46777777777777777777653                                  23346677777777777888888


Q ss_pred             HHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC----CcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384         565 AFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAY----VDTIDAEGRTVLSVAAAQGNIDVVN  640 (978)
Q Consensus       565 ~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~~t~L~~A~~~~~~~iv~  640 (978)
                      +..|+.+++++|+++|++.+.....+.++++.|...++.++++.+......    .+.......++++.+.........+
T Consensus        48 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  127 (228)
T d1k1aa_          48 VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ  127 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             hcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhh
Confidence            888888888888888887777777777888888888887777766654322    3334455678888888888888888


Q ss_pred             HHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHH
Q psy9384         641 QLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVE  720 (978)
Q Consensus       641 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~  720 (978)
                      .|.....             .........+.++|+.|+..+...+++++++.|.+++..|..|.||||+|+..|+.++++
T Consensus       128 ~l~~~~~-------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  194 (228)
T d1k1aa_         128 LLLERGA-------------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR  194 (228)
T ss_dssp             HHHHTTC-------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             hhhcccc-------------ccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHH
Confidence            8877663             122334557788999999999999999999999888888888999999999999999999


Q ss_pred             HHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHH
Q psy9384         721 MFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQ  759 (978)
Q Consensus       721 ~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~  759 (978)
                      +|+++ |++++.+|.+|.||||+|+     ..++.+++|
T Consensus       195 ~Ll~~-Gad~n~~d~~G~TpL~~A~-----~~~~~divk  227 (228)
T d1k1aa_         195 TLVRS-GADSSLKNCHNDTPLMVAR-----SRRVIDILR  227 (228)
T ss_dssp             HHHHT-TCCTTCCCTTSCCTTTTCS-----SHHHHHHHT
T ss_pred             HHHHC-CCCCCCCCCCCCCHHHHHH-----hCCCccccC
Confidence            99987 8999998999999999998     888888875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=2.5e-24  Score=213.68  Aligned_cols=204  Identities=32%  Similarity=0.399  Sum_probs=138.9

Q ss_pred             HHHHHHHHhccCCCccc-cCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy9384         357 NLLKTFLKSCEALDLEL-VDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGA  435 (978)
Q Consensus       357 ~~v~~ll~~~~~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~  435 (978)
                      ++|++|++  .|.+++. .|.+|.||||+||..|+.+++++|++.|++++..+..+.++++.++..++............
T Consensus         3 ~~v~~Ll~--~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           3 QVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHH--CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            57777777  6777765 46777777777777777777777777777777777777777777777777776666655432


Q ss_pred             -CCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy9384         436 -DVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDADINQ  514 (978)
Q Consensus       436 -~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  514 (978)
                       ........+.++.+.+.......+         .+.|...+++++..+..|.|||+.++..+..++++.+++.+.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~  151 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGM---------VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA  151 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTH---------HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cccccccccccccccccccccchhh---------hhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccc
Confidence             222333445667777776666666         7777777777777777777777777777777777777777766666


Q ss_pred             CCCCCCChhhhhhhccCCCCChHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy9384         515 QDNDGRTALSVSALCVPSSDGYAKVVSILLEKGAKVDHEDREGMTPLLVAAFEGHRDVCEIL  576 (978)
Q Consensus       515 ~~~~~~t~l~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~iv~~L  576 (978)
                      .+..|.||||+|+     ..|+.+++++|++.|++++.++..|.|||++|+++|+.++|++|
T Consensus       152 ~d~~g~TpL~~A~-----~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         152 QDDKDETPLFLAA-----REGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccchhc-----cccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            6666666666665     45566666666666666666666666666666666666666554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-23  Score=210.69  Aligned_cols=221  Identities=29%  Similarity=0.351  Sum_probs=198.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q psy9384         556 EGMTPLLVAAFEGHRDVCEILLE----NEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAA  631 (978)
Q Consensus       556 ~~~t~L~~a~~~~~~~iv~~Ll~----~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~  631 (978)
                      +|.||||+|+..|+.+++++|++    .|++++..+..|+||||+|+..|+.+++++|+++|++.+.....+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            58999999999999999988874    79999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHH
Q psy9384         632 AQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVD-QVDNDGRAPLILA  710 (978)
Q Consensus       632 ~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A  710 (978)
                      ..++.++++.+.......          ....+.......++|+.+.........+.|.....+.. .....+.++++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a  151 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPG----------TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA  151 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTT----------SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccchhhhhhccccc----------cccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHH
Confidence            999999999887765221          13334455667899999999999999999998876654 3456789999999


Q ss_pred             HHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchH
Q psy9384         711 AQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISR  790 (978)
Q Consensus       711 ~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~  790 (978)
                      +..+...+++.+++. +..++.++..|.|||++|+     ..++.+++++|+    ++|     ++++.+|.+|.|||++
T Consensus       152 ~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll----~~G-----ad~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         152 VENNSLSMVQLLLQH-GANVNAQMYSGSSALHSAS-----GRGLLPLVRTLV----RSG-----ADSSLKNCHNDTPLMV  216 (228)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHH-----HHTCHHHHHHHH----HTT-----CCTTCCCTTSCCTTTT
T ss_pred             HHhhhhhhhhhhhhh-ccccccccccCcchHHHHH-----HcCCHHHHHHHH----HCC-----CCCCCCCCCCCCHHHH
Confidence            999999999999997 9999999999999999999     999999999999    999     9999999999999999


Q ss_pred             HHhhchHHHHH
Q psy9384         791 QEYKKRLHILR  801 (978)
Q Consensus       791 a~~~g~~~i~~  801 (978)
                      |+..|+.+++|
T Consensus       217 A~~~~~~divk  227 (228)
T d1k1aa_         217 ARSRRVIDILR  227 (228)
T ss_dssp             CSSHHHHHHHT
T ss_pred             HHhCCCccccC
Confidence            99999988875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=6.3e-26  Score=242.39  Aligned_cols=239  Identities=12%  Similarity=0.020  Sum_probs=168.3

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHH---HHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCC--CCCCc
Q psy9384         665 HRDNCGWTPLHYAAIEGHEEVCRA---LLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKS--HDGRT  739 (978)
Q Consensus       665 ~~~~~g~t~L~~A~~~~~~~~v~~---Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~--~~g~t  739 (978)
                      .++..|.|||++|+.+|+.+++++   |++.|+++|..|..|.||||+|+++|+.++|++|++. |++++..+  .+|.|
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYH  163 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCC
Confidence            456778999999999999887766   7889999999999999999999999999999999997 99988765  46999


Q ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCccccc---ccccCCCCccchHHHhhchHHHHHHHHHhcccccchhhh
Q psy9384         740 ALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDL---FTKFSTTNPHISRQEYKKRLHILRKIISIANNEHIILFH  816 (978)
Q Consensus       740 ~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~---~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~t~l~  816 (978)
                      |||+|+     ..|+.+++++|+    +.|     ...   +..+.++.|+++.|+..|+.+++++|++.+ ....++.+
T Consensus       164 ~L~~Aa-----~~g~~~iv~~Ll----~~~-----~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g-a~~~~~~~  228 (346)
T d2ajaa1         164 AFRLAA-----ENGHLHVLNRLC----ELA-----PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEI  228 (346)
T ss_dssp             HHHHHH-----HTTCHHHHHHHH----HSC-----GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-HHHHHHHH
T ss_pred             hhHHHH-----HHhhHHHHHHHH----HcC-----CcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC-CCcchHHH
Confidence            999999     999999999999    887     443   333344567777777888888888888766 22234445


Q ss_pred             hhhhhhhcccccccchhhhcccCCCcccccccccccccccccc--hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhC
Q psy9384         817 HSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA--VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEG  894 (978)
Q Consensus       817 ~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~--~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g  894 (978)
                        .+...++..   +..+++.. .    .....+.++++.+..  .......   ...... ..+    .++|+.|+..|
T Consensus       229 --~~~~~~~~~---~~~~~~~~-~----~~~~~~~~~l~~a~~~~~~~~~~~---~~~~~~-~~~----~~~l~~a~~~~  290 (346)
T d2ajaa1         229 --HEFEYGEKY---VNPFIARH-V----NRLKEMHDAFKLSNPDGVFDLVTK---SECLQG-FYM----LRNLIRRNDEV  290 (346)
T ss_dssp             --CTTTTTTTT---HHHHHHHH-H----HHHHHHHTTTTTTSSSSCCCCSSH---HHHHHH-HHH----HHHHHHHCCGG
T ss_pred             --HHHHcCcHh---hhHHHHHh-h----ccchHHHHHHHHhcccccHhHHhc---cccccc-chh----hhHHHHHhcCC
Confidence              555555555   55554443 0    011112222222211  0000000   001111 233    67899999999


Q ss_pred             CHHHHHHHHHcCCC-----CCCCcccCccHHHHHHHcChHHHHHHHHH
Q psy9384         895 HEDCVRLLLHYGAD-----PKHSDHCGRNAFRVAAKSGHETVLRLLKQ  937 (978)
Q Consensus       895 ~~~iv~~Ll~~ga~-----~~~~d~~g~t~l~~A~~~~~~~~v~~L~~  937 (978)
                      +.++|++|++.++.     .+..+..|.||||+|++.||.++|++|++
T Consensus       291 ~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             GHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             hHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhC
Confidence            99999999987753     33445678899999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.6e-23  Score=193.44  Aligned_cols=153  Identities=29%  Similarity=0.392  Sum_probs=114.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      ++||+||..|++++|+.|++  .|.+++.+|..|.||||+|+ .|+.+++++|+++|++++..+..+.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~--~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            56777777777777777777  67777777777777777665 5777777777777777777777777777777777777


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCC-CCcccCCCCCcHHHHHHHcCCHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGA-HVNAADSEGRTALIASAYMGHADIVS  503 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~-~~~~~~~~~~t~L~~A~~~~~~~~v~  503 (978)
                      +.++.|++.+.+++..+..+.+|+++|+..++.++         +++|+++|+ +.+.++..|.||||+|+..++.++++
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---------~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~  150 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV---------VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS  150 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccc---------cccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            77777777777777777777777777777777777         777777665 66677777777777777777777777


Q ss_pred             HHHHcC
Q psy9384         504 SILEYD  509 (978)
Q Consensus       504 ~Ll~~g  509 (978)
                      +|+++|
T Consensus       151 ~Ll~~G  156 (156)
T d1ihba_         151 LMQANG  156 (156)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            777765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.4e-23  Score=191.91  Aligned_cols=152  Identities=28%  Similarity=0.394  Sum_probs=141.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      +.|+.||..|++++|++|++. .+.+++..|..|+||||+|+ .|+.+++++|++++.+++..+..|.+|+++|+..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~-~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHh-CCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            459999999999999999985 47789999999999999887 5889999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS  504 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  504 (978)
                      +++++++++|++++..+..|.||||+|+..|+.++         +++|+ .|++++.++..|.|||++|+..|+.+++++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i---------~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~  151 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV---------VSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH---------HHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             cccccccccccccccccCCCCeeeccccccccccc---------ccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999998         99887 689999999999999999999999999999


Q ss_pred             HHHc
Q psy9384         505 ILEY  508 (978)
Q Consensus       505 Ll~~  508 (978)
                      |+++
T Consensus       152 Ll~h  155 (156)
T d1bd8a_         152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9976

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=6.4e-26  Score=242.35  Aligned_cols=237  Identities=15%  Similarity=0.092  Sum_probs=129.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHH---HHHCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccccCCCCCCCCCcc
Q psy9384         588 KSGRTPLWAAASMGHASCVAL---LLFWGAYVDTIDAEGRTVLSVAAAQGNIDVVNQLLDRGMILGCLAGGRQTGSLDEQ  664 (978)
Q Consensus       588 ~~~~t~L~~A~~~~~~~~v~~---Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  664 (978)
                      ..|.|||++|+.+|+.+++++   |++.|++++.++.+|.||||+|+.+|+.++|++|+++|              .+++
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g--------------~~~~  153 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA--------------PTEI  153 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC--------------TTTH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--------------CCcc
Confidence            344566666666666655443   55666666666666666666666666666666666666              3444


Q ss_pred             ccC--CCCchHHHHHHHcCCHHHHHHHHhCCCCCCC---CCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCC---
Q psy9384         665 HRD--NCGWTPLHYAAIEGHEEVCRALLEAGAKVDQ---VDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHD---  736 (978)
Q Consensus       665 ~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~---  736 (978)
                      ..+  ..|.||||+|+.+|+.+++++|++.|++...   .+..+.||++.|+.+|+.++|++|++. |++++..+..   
T Consensus       154 ~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~  232 (346)
T d2ajaa1         154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHHHHHHHHCTTT
T ss_pred             ccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC-CCCcchHHHHHHH
Confidence            333  3456666666666666666666666654322   223345556666666677777777665 5544322111   


Q ss_pred             ----CCcHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCccchHHHhhchHHHHHHHHHhcccccc
Q psy9384         737 ----GRTALRVNMKNVTKLSFWYLLIQPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKRLHILRKIISIANNEHI  812 (978)
Q Consensus       737 ----g~t~L~~a~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~i~~~l~~~~~~~~~  812 (978)
                          +.+++..+.     ..+..+....+.                           .+...+..+++..........+.
T Consensus       233 ~~~~~~~~~~~~~-----~~~~~~~~~~l~---------------------------~a~~~~~~~~~~~~~~~~~~~~~  280 (346)
T d2ajaa1         233 YGEKYVNPFIARH-----VNRLKEMHDAFK---------------------------LSNPDGVFDLVTKSECLQGFYML  280 (346)
T ss_dssp             TTTTTHHHHHHHH-----HHHHHHHHTTTT---------------------------TTSSSSCCCCSSHHHHHHHHHHH
T ss_pred             cCcHhhhHHHHHh-----hccchHHHHHHH---------------------------HhcccccHhHHhcccccccchhh
Confidence                112222222     222222221111                           11111111111111111123345


Q ss_pred             hhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccchhhhhhhccCCchhhhhhhCCCCCCchHHHHHH
Q psy9384         813 ILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSAVPSATDEHFSRDTHMRIILGSSKVGEKISIAAQ  892 (978)
Q Consensus       813 t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~  892 (978)
                      ++++  .++..|+.+   ++++|++. +......+                       .+..+ ..|    .||||+||+
T Consensus       281 ~~l~--~a~~~~~ld---~v~~Ll~~-~~~~~~~~-----------------------~~~~~-~~g----~T~LhlA~~  326 (346)
T d2ajaa1         281 RNLI--RRNDEVLLD---DIRFLLSI-PGIKALAP-----------------------TATIP-GDA----NELLRLALR  326 (346)
T ss_dssp             HHHH--HHCCGGGHH---HHHHHHTS-TTTGGGSS-----------------------CCSST-TCC----CHHHHHHHH
T ss_pred             hHHH--HHhcCChHH---HHHHHHhC-cChhhhcc-----------------------cccCC-CCC----CcHHHHHHH
Confidence            7788  888899999   99999988 44322111                       11111 456    899999999


Q ss_pred             hCCHHHHHHHHHc
Q psy9384         893 EGHEDCVRLLLHY  905 (978)
Q Consensus       893 ~g~~~iv~~Ll~~  905 (978)
                      .|+.++|++|++.
T Consensus       327 ~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         327 LGNQGACALLLSI  339 (346)
T ss_dssp             HTCTTHHHHHTTS
T ss_pred             cCcHHHHHHHhCC
Confidence            9999999999863

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.6e-23  Score=193.45  Aligned_cols=153  Identities=29%  Similarity=0.417  Sum_probs=126.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      +|||+||..|+.++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++..+..+.++++.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7899999999999999999999999999999999998775 788999999999999988888888899999998888888


Q ss_pred             eeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCccCCCCCCChhhhhhhccCCCCChHH
Q psy9384         460 TIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDA-DINQQDNDGRTALSVSALCVPSSDGYAK  538 (978)
Q Consensus       460 ~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~  538 (978)
                               +++|++.+.+++..+..+.+|++.|+..++.+++++|+++++ +++.++..|.||||+|+     ..++.+
T Consensus        82 ---------~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~-----~~~~~~  147 (156)
T d1ihba_          82 ---------LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR-----LYGRNE  147 (156)
T ss_dssp             ---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH-----HTTCHH
T ss_pred             ---------ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHH-----HcCCHH
Confidence                     888888888888888888889998888888888888888775 56666666666666665     445556


Q ss_pred             HHHHHHhCC
Q psy9384         539 VVSILLEKG  547 (978)
Q Consensus       539 ~v~~Ll~~g  547 (978)
                      ++++|+++|
T Consensus       148 iv~~Ll~~G  156 (156)
T d1ihba_         148 VVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            666665554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.2e-22  Score=184.67  Aligned_cols=151  Identities=30%  Similarity=0.388  Sum_probs=134.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHhC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHH
Q psy9384         559 TPLLVAAFEGHRDVCEILLEN-EADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNID  637 (978)
Q Consensus       559 t~L~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~  637 (978)
                      ..|+.|+..|+.++|+.|+++ +++++..+..|+||||+|+ .++.+++++|++.+.+++..+..+.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            468899999999999988875 7888888999999999886 47889999999999999988888999999999999999


Q ss_pred             HHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHH
Q psy9384         638 VVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYH  717 (978)
Q Consensus       638 iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  717 (978)
                      ++++++++|              .+++.++..|.||||+|+..|+.+++++|+ .|++++.+|..|.||||+|++.|+.+
T Consensus        83 ~~~~~l~~~--------------~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          83 TLKVLVEHG--------------ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHHHHTT--------------CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             ccccccccc--------------cccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH
Confidence            999999998              677888888999999999999999999877 68899999999999999999999999


Q ss_pred             HHHHHHhh
Q psy9384         718 LVEMFLEQ  725 (978)
Q Consensus       718 iv~~Ll~~  725 (978)
                      ++++|+++
T Consensus       148 iv~~Ll~h  155 (156)
T d1bd8a_         148 LVDILQGH  155 (156)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            99999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.9e-21  Score=181.52  Aligned_cols=149  Identities=33%  Similarity=0.432  Sum_probs=111.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy9384         559 TPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGHASCVALLLFWGAYVDTIDAEGRTVLSVAAAQGNIDV  638 (978)
Q Consensus       559 t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~i  638 (978)
                      |||+.|++.|+.+++++|+++|++++ .+..|.||||+|+..++.++++.++............+.++++.++...+.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            67777777777777777777777665 56677777777777777777777777766666666667777777777777777


Q ss_pred             HHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHH
Q psy9384         639 VNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHEEVCRALLEAGAKVDQVDNDGRAPLILAAQDGHYHL  718 (978)
Q Consensus       639 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~i  718 (978)
                      ++++.+++              .+.+.++..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.+|+.++
T Consensus        83 ~~~l~~~~--------------~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_          83 VEVLLKHG--------------ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHTTT--------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             eecccccC--------------CccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHH
Confidence            77777777              5666677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHH
Q psy9384         719 VEMF  722 (978)
Q Consensus       719 v~~L  722 (978)
                      +++|
T Consensus       149 v~lL  152 (153)
T d1awcb_         149 AEIL  152 (153)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            7755

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.5e-21  Score=180.80  Aligned_cols=149  Identities=30%  Similarity=0.387  Sum_probs=120.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      |||+.||..|+.++|++|++  .|++.+ .|..|.||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~--~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHH--cCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77888888888888888888  566655 577788888888888888888888877777666677777888888888888


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy9384         425 AVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSS  504 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~  504 (978)
                      ++++++..+|++++..+..|.||||+|+..|+.++         +++|++.|++++..+..|.|||++|+.+|+.+++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~i---------v~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV---------VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhhe---------eeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            88888888888888888888888888888888887         888888888888888888888888888888888876


Q ss_pred             H
Q psy9384         505 I  505 (978)
Q Consensus       505 L  505 (978)
                      |
T Consensus       152 L  152 (153)
T d1awcb_         152 L  152 (153)
T ss_dssp             H
T ss_pred             C
Confidence            5

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-21  Score=174.01  Aligned_cols=120  Identities=33%  Similarity=0.470  Sum_probs=103.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC-cHHHHHHhcCC
Q psy9384         378 GQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGR-TALRAAAWGGH  456 (978)
Q Consensus       378 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~-t~l~~A~~~~~  456 (978)
                      +.++||+||..|+.++|++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+..+. +|||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999999888888888899888664 6889999999999988888877765 58999999998


Q ss_pred             ceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9384         457 LEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILE  507 (978)
Q Consensus       457 ~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  507 (978)
                      .++         +++|+++|++++.+|..|.|||++|+..|+.+++++|++
T Consensus        82 ~~~---------v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDT---------LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHH---------HHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccc---------cccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888         899999999988888889999999999999999988864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.7e-21  Score=171.08  Aligned_cols=118  Identities=20%  Similarity=0.104  Sum_probs=98.4

Q ss_pred             ccchhhhhhhhhhhcccccccchhhhcccCCCcccccccccccccccccc----hhhhhhhccCCchhhhhhhCCCCCCc
Q psy9384         810 EHIILFHHSFSEWLLDVKHCTKRYLCSLNDGHLIHAVDLSQRRQTSSSSA----VPSATDEHFSRDTHMRIILGSSKVGE  885 (978)
Q Consensus       810 ~~~t~l~~~~A~~~g~~~~~~~v~~Ll~~~g~~~~~~~~~~~tpl~~a~~----~v~~L~~~g~~~~~~~~~~g~~~~~t  885 (978)
                      .+.++||  .|+..|+++   ++++|+++ |+++|..+..|.||+++|+.    ++++|+++|++++..+ ..|   ..|
T Consensus         2 p~~~~L~--~Aa~~G~~~---~v~~Ll~~-gad~n~~~~~g~t~l~~a~~g~~~~v~~Ll~~ga~~~~~~-~~~---~~~   71 (125)
T d1bi7b_           2 PSADWLA--TAAARGRVE---EVRALLEA-GANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD-PAT---LTR   71 (125)
T ss_dssp             CSTTHHH--HHHHHTCHH---HHHHHHTT-TCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCCC-TTT---CCC
T ss_pred             CChhHHH--HHHHCCCHH---HHHHHHHc-CCcccccccccccccccccccccccccccccccccccccc-ccc---ccc
Confidence            3567899  999999999   99999999 99999999999999998766    7888888888888777 444   146


Q ss_pred             hHHHHHHhCCHHHHHHHHHcCCCCCCCcccCccHHHHHHHcChHHHHHHHHH
Q psy9384         886 KISIAAQEGHEDCVRLLLHYGADPKHSDHCGRNAFRVAAKSGHETVLRLLKQ  937 (978)
Q Consensus       886 ~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~v~~L~~  937 (978)
                      |||+|+++|+.++|++|+++|++++.+|..|.|||++|+++|+.+++++|++
T Consensus        72 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          72 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888888888888888888888888888888888888888888888888764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=7.8e-21  Score=198.97  Aligned_cols=189  Identities=17%  Similarity=0.133  Sum_probs=113.8

Q ss_pred             HHHHhCCCCCCCC-CCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHHhcccchhHH-------HHHH
Q psy9384         687 RALLEAGAKVDQV-DNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNMKNVTKLSFW-------YLLI  758 (978)
Q Consensus       687 ~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~-------~~~~  758 (978)
                      ..+...+.++|.. |..|+||||+|+..|+.++|++|+++ |++++.+|..|+||||.|+     ..++       .+++
T Consensus        90 ~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~-----~~~~~~~~~~~~~ll  163 (301)
T d1sw6a_          90 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAV-----KSVNNYDSGTFEALL  163 (301)
T ss_dssp             HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHH-----HSSHHHHTTCHHHHH
T ss_pred             hcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhh-----hcccchhhhhHHHHH
Confidence            3333456777755 77888888888888888888888886 8888888888888888888     3332       2334


Q ss_pred             HHHHHHHHhcCCCCcccccccccCCCCccchHHHhhch----HHHHHHHHHhcccccchhhhhhhhhhhcccccccchhh
Q psy9384         759 QPLLNIILSSLFPLTVEDLFTKFSTTNPHISRQEYKKR----LHILRKIISIANNEHIILFHHSFSEWLLDVKHCTKRYL  834 (978)
Q Consensus       759 ~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~----~~i~~~l~~~~~~~~~t~l~~~~A~~~g~~~~~~~v~~  834 (978)
                      +++.            ......|..|+|+||.++..+.    ..++++.++.                        ++.+
T Consensus       164 ~~l~------------~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~------------------------~~~~  207 (301)
T d1sw6a_         164 DYLY------------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI------------------------LMGW  207 (301)
T ss_dssp             HHHG------------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH------------------------HHHH
T ss_pred             HHHh------------hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHH------------------------HHHH
Confidence            4433            4456667778888887765443    2333332221                        2223


Q ss_pred             hcccCCCcccccccccccccccccc----------hhhhhhhccCCchhhhhhhCCCCCCchHHHHHHhCCHHHHHHHHH
Q psy9384         835 CSLNDGHLIHAVDLSQRRQTSSSSA----------VPSATDEHFSRDTHMRIILGSSKVGEKISIAAQEGHEDCVRLLLH  904 (978)
Q Consensus       835 Ll~~~g~~~~~~~~~~~tpl~~a~~----------~v~~L~~~g~~~~~~~~~~g~~~~~t~L~~A~~~g~~~iv~~Ll~  904 (978)
                      ++...+.+.......+.++++.+..          ....++.  ..+|..| ..|    .||||+||+.|+.++|++|++
T Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~in~~D-~~G----~TpLh~A~~~g~~~iv~~Ll~  280 (301)
T d1sw6a_         208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NMLNAQD-SNG----DTCLNIAARLGNISIVDALLD  280 (301)
T ss_dssp             HHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HTTTCCC-TTS----CCHHHHHHHHCCHHHHHHHHH
T ss_pred             HHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cCccCCC-CCC----CCHHHHHHHcCCHHHHHHHHH
Confidence            3332122222222233333332222          1112222  2255666 777    888888888888888888888


Q ss_pred             cCCCCCCCcccCccHHHHHH
Q psy9384         905 YGADPKHSDHCGRNAFRVAA  924 (978)
Q Consensus       905 ~ga~~~~~d~~g~t~l~~A~  924 (978)
                      +|||++.+|..|.|||++|+
T Consensus       281 ~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         281 YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCCCCCCCHHHHcC
Confidence            88888888888888888875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1e-21  Score=172.55  Aligned_cols=102  Identities=32%  Similarity=0.438  Sum_probs=39.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy9384         346 VLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSA  425 (978)
Q Consensus       346 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~  425 (978)
                      ||++|+..|+.++|++|++  .|.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus         5 pL~~A~~~g~~~~v~~Ll~--~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           5 EFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHT--TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             HHHHHHHCCCHHHHHHHHH--hhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            3333333333333333333  33333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHhCCCCCCcCCCCCCcHHH
Q psy9384         426 VVKLLLQSGADVNCSDMGGRTALR  449 (978)
Q Consensus       426 iv~~Ll~~g~~~~~~~~~~~t~l~  449 (978)
                      ++++|+++|++++.++..|.|||+
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~  106 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALE  106 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCC
T ss_pred             hhhhhhcccccceeeCCCCCCHHH
Confidence            333333333333333333333333

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3.1e-21  Score=169.42  Aligned_cols=87  Identities=33%  Similarity=0.462  Sum_probs=84.8

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCce
Q psy9384         379 QTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLE  458 (978)
Q Consensus       379 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~  458 (978)
                      .|||++||+.|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+.+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccchHHHHHHHH
Q psy9384         459 VTIVLGPLCVVKLLLA  474 (978)
Q Consensus       459 i~~~~~~~~vv~~Ll~  474 (978)
                      +         +++|++
T Consensus        83 ~---------v~~Ll~   89 (118)
T d1myoa_          83 C---------VKLLLS   89 (118)
T ss_dssp             H---------HHHHHT
T ss_pred             h---------hhhhhc
Confidence            9         999996

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.2e-20  Score=164.15  Aligned_cols=121  Identities=29%  Similarity=0.419  Sum_probs=111.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELVDKHGQTALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHS  424 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~  424 (978)
                      ++|+.||..|++++|++|++  .|.+++.+|..|+||||+||..|+.+++++|++.|++++..|..|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~--~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH--cCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            67999999999999999999  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcCCC-CCCcHHHHH--HhcCCceeeeeccchHHHHHHHHcC
Q psy9384         425 AVVKLLLQSGADVNCSDM-GGRTALRAA--AWGGHLEVTIVLGPLCVVKLLLAAG  476 (978)
Q Consensus       425 ~iv~~Ll~~g~~~~~~~~-~~~t~l~~A--~~~~~~~i~~~~~~~~vv~~Ll~~g  476 (978)
                      +++++|+++|++++..+. .+.+|++++  +..|+.++         +++|+..+
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~ei---------v~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC---------SQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCH---------HHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHH---------HHHHHhHH
Confidence            999999999999997664 477776655  67788999         99998743

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.7e-20  Score=166.58  Aligned_cols=120  Identities=29%  Similarity=0.321  Sum_probs=104.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCcee
Q psy9384         380 TALNVAAHQGFVDAVQILLEAGANINHTDCEGWTPLRSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEV  459 (978)
Q Consensus       380 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i  459 (978)
                      ++|+.||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeeccchHHHHHHHHcCCCCcccCC-CCCcHHHHH--HHcCCHHHHHHHHHc
Q psy9384         460 TIVLGPLCVVKLLLAAGAHVNAADS-EGRTALIAS--AYMGHADIVSSILEY  508 (978)
Q Consensus       460 ~~~~~~~~vv~~Ll~~g~~~~~~~~-~~~t~L~~A--~~~~~~~~v~~Ll~~  508 (978)
                               +++|+++|++++..+. .+.||+..+  +..|+.+++++|++.
T Consensus        83 ---------v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 ---------CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             ---------HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ---------HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence                     9999999999887654 467776654  567888899988864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=7.8e-20  Score=191.25  Aligned_cols=183  Identities=15%  Similarity=0.155  Sum_probs=129.5

Q ss_pred             HhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccCCCCCCCcHHHHHHHcCC-------HHHHHHHHHCCCC
Q psy9384         544 LEKGAKVDHE-DREGMTPLLVAAFEGHRDVCEILLENEADQDHIDKSGRTPLWAAASMGH-------ASCVALLLFWGAY  615 (978)
Q Consensus       544 l~~g~~~~~~-~~~~~t~L~~a~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~-------~~~v~~Ll~~g~~  615 (978)
                      ...+.++|.. |..|.||||+|+..|+.+++++|+++|++++..+..|+||||.|+..++       .++++++.   ..
T Consensus        93 ~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~  169 (301)
T d1sw6a_          93 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PC  169 (301)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GG
T ss_pred             CccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hh
Confidence            3457788866 8899999999999999999999999999999999999999999998664       24555543   34


Q ss_pred             CcccCCCCCcHHHHHHHcCC----HH--------HHHHHHHCCCccccccCCCCCCCCCccccCCCCchHHHHHHHcCCH
Q psy9384         616 VDTIDAEGRTVLSVAAAQGN----ID--------VVNQLLDRGMILGCLAGGRQTGSLDEQHRDNCGWTPLHYAAIEGHE  683 (978)
Q Consensus       616 ~~~~~~~~~t~L~~A~~~~~----~~--------iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  683 (978)
                      ....+..|+||||.++..+.    ..        ++.+++..+.             .........+.++++.+......
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN-------------RPIQSGTNEKESKPNDKNGERKD  236 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG-------------CCEEEC----------------C
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCC-------------cchhcccccccchhHHHHhcchH
Confidence            56678889999998886543    23        3344555442             22223334444555544433332


Q ss_pred             HHH-----HHHHhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHhhcCCCCcCCCCCCCcHHHHHH
Q psy9384         684 EVC-----RALLEAGAKVDQVDNDGRAPLILAAQDGHYHLVEMFLEQYEANVNQKSHDGRTALRVNM  745 (978)
Q Consensus       684 ~~v-----~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~g~t~L~~a~  745 (978)
                      ..+     ..++.  ..+|.+|..|+||||+|+++|+.++|++|++. |++++.+|..|.|||++|+
T Consensus       237 ~~~~~~~~~~~~~--~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         237 SILENLDLKWIIA--NMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHCSHHHHHH--HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHhhHHHHh--cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            222     22232  23788999999999999999999999999997 9999999999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.3e-18  Score=159.43  Aligned_cols=123  Identities=23%  Similarity=0.260  Sum_probs=111.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhccCCCcccc------CCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy9384         345 SVLHKLCAENNINLLKTFLKSCEALDLELV------DKHGQTALNVAAHQ---GFVDAVQILLEAGANINHTDCEGWTPL  415 (978)
Q Consensus       345 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~------~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~L  415 (978)
                      ..|+.|+..+++..+..++.  .+.+++..      +..|.||||+|++.   |..++|++|+++|++++.+|..|+|||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpL   85 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHH--cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccc
Confidence            35778899999999999998  56655543      67899999999985   688999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHhcCCceeeeeccchHHHHHHHHcCCC
Q psy9384         416 RSASWGGHSAVVKLLLQSGADVNCSDMGGRTALRAAAWGGHLEVTIVLGPLCVVKLLLAAGAH  478 (978)
Q Consensus       416 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~i~~~~~~~~vv~~Ll~~g~~  478 (978)
                      |+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++         +++|++.++.
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i---------~~~L~~~~~~  139 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC---------EELLTQALSG  139 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH---------HHHHHHHHTT
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHH---------HHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999         9999997653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.6e-18  Score=156.41  Aligned_cols=122  Identities=20%  Similarity=0.199  Sum_probs=112.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCC------CCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy9384         381 ALNVAAHQGFVDAVQILLEAGANINHT------DCEGWTPLRSASWG---GHSAVVKLLLQSGADVNCSDMGGRTALRAA  451 (978)
Q Consensus       381 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~~~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~t~l~~A  451 (978)
                      .|..|++.+++..+..++..|.+++..      +..|+||||+|+..   |+.+++++|+++|++++.++..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            466888999999999999999886654      67799999999975   678999999999999999999999999999


Q ss_pred             HhcCCceeeeeccchHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy9384         452 AWGGHLEVTIVLGPLCVVKLLLAAGAHVNAADSEGRTALIASAYMGHADIVSSILEYDAD  511 (978)
Q Consensus       452 ~~~~~~~i~~~~~~~~vv~~Ll~~g~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~  511 (978)
                      +..|+.++         +++|+++|++++.+|..|.|||++|+..|+.+++++|++.+..
T Consensus        89 ~~~~~~~~---------v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          89 CLTDNAEC---------LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHH---------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccc---------cccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999         9999999999999999999999999999999999999997654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.91  E-value=2.1e-09  Score=110.12  Aligned_cols=229  Identities=14%  Similarity=0.064  Sum_probs=121.2

Q ss_pred             CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecccc-C
Q psy9384           7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQS-Y   85 (978)
Q Consensus         7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~-~   85 (978)
                      -+.+.|+||+..++++.++          .++.+.|+|++|+|||+|+..+...+.            ....|..+.. .
T Consensus         9 ~~~~~f~GR~~el~~l~~~----------~~~~i~i~G~~G~GKTsLl~~~~~~~~------------~~~~~i~~~~~~   66 (283)
T d2fnaa2           9 DNRKDFFDREKEIEKLKGL----------RAPITLVLGLRRTGKSSIIKIGINELN------------LPYIYLDLRKFE   66 (283)
T ss_dssp             CSGGGSCCCHHHHHHHHHT----------CSSEEEEEESTTSSHHHHHHHHHHHHT------------CCEEEEEGGGGT
T ss_pred             CChhhCCChHHHHHHHHhc----------cCCEEEEEcCCCCcHHHHHHHHHHHCC------------CCeEEEEecccc
Confidence            4679999999988887664          346899999999999999999874421            2222332222 2


Q ss_pred             CCCccCHHHHHHHHHHHHhc---CCCchhHHHHhhhcchhhH---hhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEE
Q psy9384          86 DLATFSVQNFIQSLVEQFSS---SESPFSEAFSTIVEDESIK---ALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYF  159 (978)
Q Consensus        86 ~~~~~~~~~~l~sl~~QL~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  159 (978)
                      .........++..+...+-.   ........+..........   ..........    .+..++......   ...+++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~~---~~~~~~  139 (283)
T d2fnaa2          67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRL----SFANLLESFEQA---SKDNVI  139 (283)
T ss_dssp             TCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CC----CHHHHHHHHHHT---CSSCEE
T ss_pred             ccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhh----HHHHHHHHHHhh---cccccc
Confidence            33333344444444433322   1112222211111000000   0000011112    222222222222   356789


Q ss_pred             EEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhccc-----------Ccccccccccc
Q psy9384         160 ILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFL-----------GFHKLSLDDLR  228 (978)
Q Consensus       160 iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~-----------~~~~i~l~~~~  228 (978)
                      +|+|.+|+.....    ..++...+..+.....     .+..++++++... +...+.           ....+.+...+
T Consensus       140 i~id~~~~~~~~~----~~~~~~~l~~~~~~~~-----~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~L~~l~  209 (283)
T d2fnaa2         140 IVLDEAQELVKLR----GVNLLPALAYAYDNLK-----RIKFIMSGSEMGL-LYDYLRVEDPESPLFGRAFSTVELKPFS  209 (283)
T ss_dssp             EEEETGGGGGGCT----TCCCHHHHHHHHHHCT-----TEEEEEEESSHHH-HHHHTTTTCTTSTTTTCCCEEEEECCCC
T ss_pred             cccchhhhhcccc----hHHHHHHHHHHHHhhh-----hhhhhhccccchH-HHHHHHhhhhcchhcccceeEEeeCCCC
Confidence            9999999987542    4556666666654332     3455555555321 222211           12234554433


Q ss_pred             chhhhhHHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhhcc
Q psy9384         229 KSHVIRDMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGISNG  286 (978)
Q Consensus       229 ~~~~~~Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~~~  286 (978)
                          .+|+..++...+...    ......    .+++.+.++|.+.|+.+++..+...
T Consensus       210 ----~~e~~~~l~~~~~~~----~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~~~  255 (283)
T d2fnaa2         210 ----REEAIEFLRRGFQEA----DIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDN  255 (283)
T ss_dssp             ----HHHHHHHHHHHHHHH----TCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhhhhhc----CCCHHH----HHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                478888887765421    111122    4688899999999999998877543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.89  E-value=1.4e-08  Score=102.17  Aligned_cols=216  Identities=13%  Similarity=0.059  Sum_probs=118.7

Q ss_pred             CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384           6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus         6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      |.+ -.|+||+--.+++.+|+...   ...+.+++.|+|.+|.||||||+.++++......      ......+|.+-..
T Consensus        17 p~~-~~~~gR~~~~~~i~~~L~~~---~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~------~~f~~~~Wv~vs~   86 (277)
T d2a5yb3          17 PKQ-MTCYIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG------INYDSIVWLKDSG   86 (277)
T ss_dssp             BCC-CCSCCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT------TTBSEEEEEECCC
T ss_pred             CCC-CceeCcHHHHHHHHHHHHhc---cCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhh------hcCceEEEEEecC
Confidence            434 55779999999999999753   2235789999999999999999999855321100      0111222333333


Q ss_pred             CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384          86 DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI  165 (978)
Q Consensus        86 ~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL  165 (978)
                      ..........+..++.++......      .....   ..        ..........+.+.+     ..+++.+|+|.+
T Consensus        87 ~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~---~~--------~~~~~~~~~~~~~~L-----~~kr~LlVLDDv  144 (277)
T d2a5yb3          87 TAPKSTFDLFTDILLMLKSEDDLL------NFPSV---EH--------VTSVVLKRMICNALI-----DRPNTLFVFDDV  144 (277)
T ss_dssp             CSTTHHHHHHHHHHHHHTTTSCCT------TCCCC---TT--------CCHHHHHHHHHHHHT-----TSTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcchhhc------CCccc---hh--------hhhHHHHHHHHHHHh-----ccCCeeEecchh
Confidence            344444444455555444332111      00000   00        000111111222222     246799999999


Q ss_pred             ccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcc-cCccccccccccchhhhhHHHHHHHHHh
Q psy9384         166 DETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMF-LGFHKLSLDDLRKSHVIRDMQQYILLRL  244 (978)
Q Consensus       166 DE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~-~~~~~i~l~~~~~~~~~~Di~~yi~~~l  244 (978)
                      ++..             .+..+.. .      .-++++|||...  +.... .....+.+...+.    +|-...+..+-
T Consensus       145 ~~~~-------------~~~~~~~-~------~srilvTTR~~~--v~~~~~~~~~~~~l~~L~~----~ea~~Lf~~~~  198 (277)
T d2a5yb3         145 VQEE-------------TIRWAQE-L------RLRCLVTTRDVE--ISNAASQTCEFIEVTSLEI----DECYDFLEAYG  198 (277)
T ss_dssp             CCHH-------------HHHHHHH-T------TCEEEEEESBGG--GGGGCCSCEEEEECCCCCH----HHHHHHHHHTS
T ss_pred             hHHh-------------hhhhhcc-c------CceEEEEeehHH--HHHhcCCCCceEECCCCCH----HHHHHHHHHHh
Confidence            8754             2222221 1      237888888764  43332 3334567765554    44444443322


Q ss_pred             cCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         245 ASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ...     ......+++..+++++++|.+|-+.++-..+.
T Consensus       199 ~~~-----~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~  233 (277)
T d2a5yb3         199 MPM-----PVGEKEEDVLNKTIELSSGNPATLMMFFKSCE  233 (277)
T ss_dssp             CCC-----C--CHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             CCc-----cCchhhHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence            111     11223456889999999999999999877774

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=1.5e-07  Score=92.01  Aligned_cols=195  Identities=13%  Similarity=0.149  Sum_probs=109.4

Q ss_pred             CCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCC
Q psy9384           7 GQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYD   86 (978)
Q Consensus         7 ~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~   86 (978)
                      ..=..|.|.+.+.+.++.|++..      .-+-+.|+|+||+|||+++..++.++...         .  ..+.++....
T Consensus        11 ~~~~divg~~~~~~~L~~~i~~~------~~~~lLl~Gp~G~GKttl~~~la~~l~~~---------~--~~~~~~e~~~   73 (227)
T d1sxjc2          11 ETLDEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGK---------N--YSNMVLELNA   73 (227)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTT---------S--HHHHEEEECT
T ss_pred             CCHHHccCcHHHHHHHHHHHHcC------CCCeEEEECCCCCChhHHHHHHHHHhhcC---------C--CcceeEEecc
Confidence            33456788888889999999874      22237789999999999999998554221         0  0011111111


Q ss_pred             CCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccc
Q psy9384          87 LATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSID  166 (978)
Q Consensus        87 ~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLD  166 (978)
                      ...... .............                                           .........++|||..|
T Consensus        74 ~~~~~~-~~~~~~~~~~~~~-------------------------------------------~~~~~~~~kiiiiDe~d  109 (227)
T d1sxjc2          74 SDDRGI-DVVRNQIKDFAST-------------------------------------------RQIFSKGFKLIILDEAD  109 (227)
T ss_dssp             TSCCSH-HHHHTHHHHHHHB-------------------------------------------CCSSSCSCEEEEETTGG
T ss_pred             cccCCe-eeeecchhhcccc-------------------------------------------ccccCCCeEEEEEeccc
Confidence            111111 1111111111100                                           00112334588888888


Q ss_pred             cccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcC
Q psy9384         167 ETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLAS  246 (978)
Q Consensus       167 E~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~  246 (978)
                      ......        ...|...+..    .+..+++++++...........+.+..+.+....    ..|+..++..-+..
T Consensus       110 ~~~~~~--------~~~Ll~~le~----~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~----~~~i~~~l~~I~~~  173 (227)
T d1sxjc2         110 AMTNAA--------QNALRRVIER----YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLP----QEAIERRIANVLVH  173 (227)
T ss_dssp             GSCHHH--------HHHHHHHHHH----TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHT
T ss_pred             cchhhH--------HHHHHHHhhh----cccceeeccccCcHHHhHHHHHHHHhhhcccccc----cccccccccccccc
Confidence            876431        2234444443    2345677777766554344444456666765444    47888888865542


Q ss_pred             chHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         247 EESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..      -...++..+.++++++|...-|-..++.+.
T Consensus       174 e~------i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~  205 (227)
T d1sxjc2         174 EK------LKLSPNAEKALIELSNGDMRRVLNVLQSCK  205 (227)
T ss_dssp             TT------CCBCHHHHHHHHHHHTTCHHHHHHHTTTTT
T ss_pred             cc------ccCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            21      123456788999999999766665555543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=5.2e-07  Score=87.65  Aligned_cols=192  Identities=14%  Similarity=0.136  Sum_probs=108.2

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..|.|.+-+.+.++.|+...      ..+-+.++|+||+|||+++..++..+....       ....+  +..+..  +.
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~------~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~-------~~~~~--~~~n~~--~~   77 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRS-------YADGV--LELNAS--DD   77 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-------HHHHE--EEECTT--SC
T ss_pred             HHhcCCHHHHHHHHHHHHcC------CCCeEEEECCCCCCchhhHHHHHHHHhccc-------ccccc--cccccc--cc
Confidence            45677777788899999874      223477899999999999999985543211       01111  222211  12


Q ss_pred             cCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecccccc
Q psy9384          90 FSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDETH  169 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~~  169 (978)
                      ++. ..++......+...                                          ........-++|+|..|...
T Consensus        78 ~~~-~~i~~~~~~~~~~~------------------------------------------~~~~~~~~kviiiDe~d~~~  114 (224)
T d1sxjb2          78 RGI-DVVRNQIKHFAQKK------------------------------------------LHLPPGKHKIVILDEADSMT  114 (224)
T ss_dssp             CSH-HHHHTHHHHHHHBC------------------------------------------CCCCTTCCEEEEEESGGGSC
T ss_pred             CCc-eehhhHHHHHHHhh------------------------------------------ccCCCcceEEEEEecccccc
Confidence            221 11221112111110                                          01112344688899998887


Q ss_pred             ccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCchH
Q psy9384         170 VTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEES  249 (978)
Q Consensus       170 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~~  249 (978)
                      ...    +    ..|...+.    ..+....+++++...........+.+..+.+...+    .+++..|+...+...  
T Consensus       115 ~~~----~----~~ll~~~e----~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~----~~~i~~~l~~i~~~e--  176 (224)
T d1sxjb2         115 AGA----Q----QALRRTME----LYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS----DEDVLKRLLQIIKLE--  176 (224)
T ss_dssp             HHH----H----HTTHHHHH----HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHH--
T ss_pred             hhH----H----HHHhhhcc----ccccceeeeeccCchhhhhhHHHHHHHHhhhcccc----hhhhHHHHHHHHHhc--
Confidence            542    1    12333333    23445677777766544333333455667775544    478888887655421  


Q ss_pred             HHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         250 LRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       250 ~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                          .-....+..+.+++.++|...-|-..++..
T Consensus       177 ----~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~  206 (224)
T d1sxjb2         177 ----DVKYTNDGLEAIIFTAEGDMRQAINNLQST  206 (224)
T ss_dssp             ----TCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----ccCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence                122345677899999999987766666554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=3.8e-06  Score=79.58  Aligned_cols=97  Identities=9%  Similarity=-0.025  Sum_probs=61.2

Q ss_pred             CCcEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhh
Q psy9384         155 KTSYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIR  234 (978)
Q Consensus       155 ~~~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~  234 (978)
                      ...-++|||..|....+.        ...|.+++.    ..|.++++|++++....-+....+.+..+.+...+    .+
T Consensus       107 ~~~kviIide~d~l~~~a--------~n~Llk~lE----ep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~----~~  170 (207)
T d1a5ta2         107 GGAKVVWVTDAALLTDAA--------ANALLKTLE----EPPAETWFFLATREPERLLATLRSRCRLHYLAPPP----EQ  170 (207)
T ss_dssp             SSCEEEEESCGGGBCHHH--------HHHHHHHHT----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HH
T ss_pred             CccceEEechhhhhhhhh--------hHHHHHHHH----hhcccceeeeeecChhhhhhhhcceeEEEecCCCC----HH
Confidence            345689999998886432        224444444    44668888888877654333344556667765433    47


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHH
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLER  278 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~  278 (978)
                      ++..++.+.+.           ..++..+.+++.|+|....|-.
T Consensus       171 ~~~~~L~~~~~-----------~~~~~~~~i~~~s~Gs~r~al~  203 (207)
T d1a5ta2         171 YAVTWLSREVT-----------MSQDALLAALRLSAGSPGAALA  203 (207)
T ss_dssp             HHHHHHHHHCC-----------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHcCC-----------CCHHHHHHHHHHcCCCHHHHHH
Confidence            88888865443           2235567778899999766543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.36  E-value=9.3e-07  Score=86.37  Aligned_cols=195  Identities=17%  Similarity=0.156  Sum_probs=106.9

Q ss_pred             CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384           6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus         6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      |..-..|.|.+.+.+.++.|++..      ..+-+.|+|+||+|||+++..++..+...         .....++.++..
T Consensus        20 P~~~~diig~~~~~~~l~~~i~~~------~~~~lll~Gp~G~GKTtla~~iak~l~~~---------~~~~~~~e~n~s   84 (231)
T d1iqpa2          20 PQRLDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGE---------NWRHNFLELNAS   84 (231)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGG---------GHHHHEEEEETT
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC------CCCeEEEECCCCCcHHHHHHHHHHHHHhc---------ccCCCeeEEecC
Confidence            444567888999999999999975      33458899999999999999998554211         111122222211


Q ss_pred             CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384          86 DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI  165 (978)
Q Consensus        86 ~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL  165 (978)
                      +  .+. ...++....+....                                           .........++++|-.
T Consensus        85 ~--~~~-~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~iilide~  118 (231)
T d1iqpa2          85 D--ERG-INVIREKVKEFART-------------------------------------------KPIGGASFKIIFLDEA  118 (231)
T ss_dssp             C--HHH-HHTTHHHHHHHHHS-------------------------------------------CCGGGCSCEEEEEETG
T ss_pred             c--ccc-hhHHHHHHHHHHhh-------------------------------------------hhccCCCceEEeehhh
Confidence            1  000 00011111100000                                           0011234568888888


Q ss_pred             ccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhc
Q psy9384         166 DETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLA  245 (978)
Q Consensus       166 DE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~  245 (978)
                      |.+....        ...|..++..    .+.++.+++++...........+.+..+.+....    ..++..++...+.
T Consensus       119 d~~~~~~--------~~~ll~~l~~----~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~----~~~~~~~l~~~~~  182 (231)
T d1iqpa2         119 DALTQDA--------QQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR----DEDIAKRLRYIAE  182 (231)
T ss_dssp             GGSCHHH--------HHHHHHHHHH----TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC----HHHHHHHHHHHHH
T ss_pred             hhcchhH--------HHHHhhhccc----CCcceEEEeccCChhhchHhHhCccccccccccc----hhhHHHHHHHHHH
Confidence            8775431        2234444442    2345677777766554333333445556664333    3677777776554


Q ss_pred             CchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhh
Q psy9384         246 SEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGI  283 (978)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l  283 (978)
                      ...      -...++..+.+++.++|...-|-..++.+
T Consensus       183 ~e~------i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~  214 (231)
T d1iqpa2         183 NEG------LELTEEGLQAILYIAEGDMRRAINILQAA  214 (231)
T ss_dssp             TTT------CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhC------CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            221      12345677889999999866554444443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.1e-06  Score=86.25  Aligned_cols=199  Identities=13%  Similarity=0.080  Sum_probs=105.3

Q ss_pred             CCCCCcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384           6 PGQSKKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus         6 ~~~~~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      |..-..+.|++.+.+.++.|+++.      ..+-++|+|+||+|||+++..++..+...       ... ...++.++. 
T Consensus         8 P~~~~diig~~~~~~~l~~~i~~~------~~~~lll~Gp~G~GKTtl~~~i~~~l~~~-------~~~-~~~~~~~~~-   72 (237)
T d1sxjd2           8 PKNLDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGP-------DLM-KSRILELNA-   72 (237)
T ss_dssp             CSSTTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHH-------HHH-TTSEEEECS-
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC------CCCeEEEECCCCCChHHHHHHHHHHHcCC-------ccc-ccchhheec-
Confidence            444456889999999999999864      23458999999999999999998654211       011 111111121 


Q ss_pred             CCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEecc
Q psy9384          86 DLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSI  165 (978)
Q Consensus        86 ~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaL  165 (978)
                       ...+... .....+........          ......              ..        ... ...+.-++|+|-+
T Consensus        73 -~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~--------------~~--------~~~-~~~~~~viiiDe~  117 (237)
T d1sxjd2          73 -SDERGIS-IVREKVKNFARLTV----------SKPSKH--------------DL--------ENY-PCPPYKIIILDEA  117 (237)
T ss_dssp             -SSCCCHH-HHTTHHHHHHHSCC----------CCCCTT--------------HH--------HHS-CCCSCEEEEETTG
T ss_pred             -cccccch-HHHHHHHHHhhhhh----------hhhhHH--------------HH--------hhc-cccCceEEEEecc
Confidence             1222221 22222222221110          000000              00        011 1223347899988


Q ss_pred             ccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhc
Q psy9384         166 DETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLA  245 (978)
Q Consensus       166 DE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~  245 (978)
                      |-.....        ...+..++...    +...++++++......+....+.+..+.+....    ..++..++...+.
T Consensus       118 d~l~~~~--------~~~l~~~~~~~----~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~----~~~~~~~L~~i~~  181 (237)
T d1sxjd2         118 DSMTADA--------QSALRRTMETY----SGVTRFCLICNYVTRIIDPLASQCSKFRFKALD----ASNAIDRLRFISE  181 (237)
T ss_dssp             GGSCHHH--------HHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHHHSEEEECCCCC----HHHHHHHHHHHHH
T ss_pred             cccCHHH--------HHHHhhccccc----cccccccccccccccccccccchhhhhcccccc----ccccchhhhhhhh
Confidence            8765321        12344444422    334566666555443344333445566765444    3678888775544


Q ss_pred             CchHHHhhcCcChHHHHHHHHhhchhhHHHH
Q psy9384         246 SEESLRVHMNRDTAEMLNQLHIKSNGCFLYL  276 (978)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~  276 (978)
                      ..      .-...++..+.|++.++|.-.=|
T Consensus       182 ~e------~i~i~~~~l~~ia~~s~gd~R~a  206 (237)
T d1sxjd2         182 QE------NVKCDDGVLERILDISAGDLRRG  206 (237)
T ss_dssp             TT------TCCCCHHHHHHHHHHTSSCHHHH
T ss_pred             hh------cCcCCHHHHHHHHHHcCCCHHHH
Confidence            21      12345678899999999984433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=5.9e-06  Score=80.63  Aligned_cols=207  Identities=12%  Similarity=0.067  Sum_probs=111.5

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCc
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLAT   89 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~   89 (978)
                      ..+.|.+-+.+.+..|+.+.+     -+..+.|+|+||+|||+++..++..+....          ...      ..+ .
T Consensus        12 ~dlig~~~~~~~L~~~i~~~~-----~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~----------~~~------~~~-~   69 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCET----------GIT------ATP-C   69 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTTC-----CCSEEEEECSTTSSHHHHHHHHHHHHHCTT----------CSC------SSC-C
T ss_pred             HHccChHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCcc----------ccc------cCc-c
Confidence            345777777788999998642     345678999999999999998875432110          000      000 0


Q ss_pred             cCHHHHHHHHHHHHhcC-CCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEEeccccc
Q psy9384          90 FSVQNFIQSLVEQFSSS-ESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILVDSIDET  168 (978)
Q Consensus        90 ~~~~~~l~sl~~QL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~iviDaLDE~  168 (978)
                      ... .    -+..+... ++.+       +.-. ...        ....+.+++++... .......+.-++|||..|..
T Consensus        70 ~~~-~----~~~~i~~~~~~~~-------~~~~-~~~--------~~~i~~ir~~~~~~-~~~~~~~~~kviiIde~d~l  127 (239)
T d1njfa_          70 GVC-D----NCREIEQGRFVDL-------IEID-AAS--------RTKVEDTRDLLDNV-QYAPARGRFKVYLIDEVHML  127 (239)
T ss_dssp             SCS-H----HHHHHHHTCCTTE-------EEEE-TTC--------SSSHHHHHHHHHSC-CCSCSSSSSEEEEEETGGGS
T ss_pred             ccc-h----HHHHHHcCCCCeE-------EEec-chh--------cCCHHHHHHHHHHH-HhccccCCCEEEEEECcccC
Confidence            000 0    01111111 1110       0000 000        00012333333322 12222334568899999988


Q ss_pred             cccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHHHHHHHHHhcCch
Q psy9384         169 HVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDMQQYILLRLASEE  248 (978)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di~~yi~~~l~~~~  248 (978)
                      ....        ...|.+.+.    ..|.++++++++.....-+....+.+..+.+...+    .+|+..++....... 
T Consensus       128 ~~~~--------q~~Llk~lE----~~~~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~----~~~i~~~l~~i~~~e-  190 (239)
T d1njfa_         128 SRHS--------FNALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD----VEQIRHQLEHILNEE-  190 (239)
T ss_dssp             CHHH--------HHHHHHHHH----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC----HHHHHHHHHHHHHHH-
T ss_pred             CHHH--------HHHHHHHHh----cCCCCeEEEEEcCCccccChhHhhhhcccccccCc----HHHhhhHHHHHHhhh-
Confidence            6431        123444444    34556778888776554444444556667775444    378888777655521 


Q ss_pred             HHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhh
Q psy9384         249 SLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDG  282 (978)
Q Consensus       249 ~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~  282 (978)
                           .....++..+.++..++|...-|-..++.
T Consensus       191 -----~~~~~~~~l~~i~~~s~Gd~R~ain~l~~  219 (239)
T d1njfa_         191 -----HIAHEPRALQLLARAAEGSLRDALSLTDQ  219 (239)
T ss_dssp             -----TCCBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             -----ccCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                 12334567788999999998876666654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=2.3e-06  Score=84.88  Aligned_cols=107  Identities=9%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             cEEEEEeccccccccCCCcCCCcchhhHHHHHHhccCCCCCceeeeeeecccccchhhcccCccccccccccchhhhhHH
Q psy9384         157 SYFILVDSIDETHVTNKKIYSDKATCSIADLLARNHHLFPPWLFLFCTVRRQSKSIKKMFLGFHKLSLDDLRKSHVIRDM  236 (978)
Q Consensus       157 ~~~iviDaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~sr~~~~~i~~~~~~~~~i~l~~~~~~~~~~Di  236 (978)
                      ..++|||-+|.+....        ...+.+++..    .+.++++++++...........+.+..+.+...+    .+++
T Consensus       132 ~~iiiide~d~l~~~~--------~~~l~~~~e~----~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~----~~~~  195 (252)
T d1sxje2         132 YKCVIINEANSLTKDA--------QAALRRTMEK----YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPS----DSEI  195 (252)
T ss_dssp             CEEEEEECTTSSCHHH--------HHHHHHHHHH----STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCC----HHHH
T ss_pred             ceEEEecccccccccc--------chhhhccccc----ccccccceeeeccccchhhhhhcchheeeecccc----hhhH
Confidence            3588888888875321        2234455542    3446677777765443222333344556665433    3678


Q ss_pred             HHHHHHHhcCchHHHhhcCcChHHHHHHHHhhchhhHHHHHHHHhhhh
Q psy9384         237 QQYILLRLASEESLRVHMNRDTAEMLNQLHIKSNGCFLYLERVLDGIS  284 (978)
Q Consensus       237 ~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a~g~flw~~~~~~~l~  284 (978)
                      ..++...+....     ..-..+++.+.|+..++|...-|-.+++.+.
T Consensus       196 ~~~l~~i~~~e~-----~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~  238 (252)
T d1sxje2         196 STILSDVVTNER-----IQLETKDILKRIAQASNGNLRVSLLMLESMA  238 (252)
T ss_dssp             HHHHHHHHHHHT-----CEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHcC-----CCCCcHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            888765443211     1122346778899999999877666666554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.14  E-value=3.3e-06  Score=85.15  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             CcccccccchHHHHHHHh----cCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384          10 KKFFCREWAFVKLVHCLE----SKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~----~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      ++|.||+--++++.+||.    ++    ....+.+.|+|+||+|||+++..+.+.+..          ...+.+.+..  
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~----~~~~~~lll~GppGtGKT~l~~~l~~~l~~----------~~~~~~~~~~--   79 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNP----GHHYPRATLLGRPGTGKTVTLRKLWELYKD----------KTTARFVYIN--   79 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHST----TSSCCEEEEECCTTSSHHHHHHHHHHHHTT----------SCCCEEEEEE--
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCC----CCCCCceEEECCCCCCHHHHHHHHHHHHhc----------ccCCcEEEec--
Confidence            678999876666555554    32    224567899999999999999999977643          1122222222  


Q ss_pred             CCCccCHHHHHHHHHHHHhcCC
Q psy9384          86 DLATFSVQNFIQSLVEQFSSSE  107 (978)
Q Consensus        86 ~~~~~~~~~~l~sl~~QL~~~~  107 (978)
                      ..........++.+..++....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~  101 (276)
T d1fnna2          80 GFIYRNFTAIIGEIARSLNIPF  101 (276)
T ss_dssp             TTTCCSHHHHHHHHHHHTTCCC
T ss_pred             chhhhhhhhhhhhhHHhhhhhh
Confidence            2233466677777777766543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.13  E-value=5.8e-06  Score=83.82  Aligned_cols=230  Identities=13%  Similarity=0.004  Sum_probs=113.2

Q ss_pred             CCCcccccccchHHHHHHH----hcCCCCCCC-CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeecc
Q psy9384           8 QSKKFFCREWAFVKLVHCL----ESKTNSKPG-NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFC   82 (978)
Q Consensus         8 ~~~~f~~r~w~~~~~~~wl----~~~~~~~~~-~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~   82 (978)
                      +.++|.||+--++++.+|+    ....  .++ ...++.++|+||+|||+++..+.+.+....     ........+.|.
T Consensus        14 ~P~~~~~Re~e~~~l~~~l~~~~~~~~--~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~-----~~~~~~~~~~~~   86 (287)
T d1w5sa2          14 IPPELRVRRGEAEALARIYLNRLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-----AKEGLTVKQAYV   86 (287)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-----HHTTCCEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCC--CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhc-----ccccCCceeeee
Confidence            3467889987777665544    2210  111 112477799999999999999997764211     111222333332


Q ss_pred             ccCCCCccCHHHHHHHHHHHHhcCCCchhHHHHhhhcchhhHhhcchhhhhhCHHHHHHHhhhhhhhcCCCCCCcEEEEE
Q psy9384          83 QSYDLATFSVQNFIQSLVEQFSSSESPFSEAFSTIVEDESIKALLKSDQLLQDSDEVFKKALILPLAQIKHPKTSYFILV  162 (978)
Q Consensus        83 ~~~~~~~~~~~~~l~sl~~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivi  162 (978)
                        ......+....+..+..++....+...                      . ....+.+.+.+....   ......+++
T Consensus        87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~l~~~~~~---~~~~~~~ii  138 (287)
T d1w5sa2          87 --NAFNAPNLYTILSLIVRQTGYPIQVRG----------------------A-PALDILKALVDNLYV---ENHYLLVIL  138 (287)
T ss_dssp             --EGGGCCSHHHHHHHHHHHHTCCCCCTT----------------------C-CHHHHHHHHHHHHHH---HTCEEEEEE
T ss_pred             --ccccccchhhHHHHHhhhccccccccc----------------------c-hHHHHHHHHHHHHHh---ccCccccce
Confidence              234555677777777777765432200                      0 001222223322222   245678888


Q ss_pred             eccccccccCCCcCCCcchhhHHHHHHhccCCCC-Cceeeeeee-cccccch-----hhcccC-ccccccccccchhhhh
Q psy9384         163 DSIDETHVTNKKIYSDKATCSIADLLARNHHLFP-PWLFLFCTV-RRQSKSI-----KKMFLG-FHKLSLDDLRKSHVIR  234 (978)
Q Consensus       163 DaLDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~s-r~~~~~i-----~~~~~~-~~~i~l~~~~~~~~~~  234 (978)
                      |-+|......  ....+....+..+........+ ..+.+++++ .+...+.     ...... ...+.+..++    ..
T Consensus       139 de~d~l~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~----~~  212 (287)
T d1w5sa2         139 DEFQSMLSSP--RIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK----SR  212 (287)
T ss_dssp             ESTHHHHSCT--TSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC----HH
T ss_pred             eEEEEecccc--ccchhHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCc----HH
Confidence            8888876421  1122233333333332222222 233444433 3322211     111111 2345554444    47


Q ss_pred             HHHHHHHHHhcCchHHHhhcCcChHHHHHHHHhhc------hhhHHHHHHHHhh
Q psy9384         235 DMQQYILLRLASEESLRVHMNRDTAEMLNQLHIKS------NGCFLYLERVLDG  282 (978)
Q Consensus       235 Di~~yi~~~l~~~~~~~~~~~~~~~~i~~~l~~~a------~g~flw~~~~~~~  282 (978)
                      ++..++..++....    ......++.++.+++++      .|....|--+++.
T Consensus       213 el~~Il~~r~~~~~----~~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~  262 (287)
T d1w5sa2         213 ELYTILEQRAELGL----RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKM  262 (287)
T ss_dssp             HHHHHHHHHHHHHB----CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHhh----ccCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHHH
Confidence            88888888775211    11112344555555544      6777766555543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=1.8e-05  Score=78.14  Aligned_cols=56  Identities=23%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             CCCCCcccccccchHHHHHHHhcC-----------CCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384           6 PGQSKKFFCREWAFVKLVHCLESK-----------TNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus         6 ~~~~~~f~~r~w~~~~~~~wl~~~-----------~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      |..-..+.|.+-..+++.+|+..-           .....+..+.+.|+|+||+|||+++..+..++
T Consensus        10 P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          10 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            334455667777777888888530           00022345679999999999999999998554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.79  E-value=5.9e-05  Score=71.24  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=27.0

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+|.+.+   ++ ....+||+|+||+|||.|+..+..++
T Consensus        25 ~~~~~~~~---~~-~~n~l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          25 VKEALENL---GS-LYNPIFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             HHHHHHTT---TT-SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHhCc---CC-CCCcEEEECCCCCcHHHHHHHHHHHh
Confidence            47777754   11 22459999999999999999998553

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=0.00015  Score=70.41  Aligned_cols=49  Identities=31%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++|=+-+.++++.|++.... +....+-+.++|+||+|||+++..+...
T Consensus        10 divGq~~~~~~L~~~i~~~~~-~~~~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          10 EYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHHHTT-SSSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            455666566677778764210 1112345778999999999999999743

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=0.00084  Score=64.91  Aligned_cols=51  Identities=31%  Similarity=0.317  Sum_probs=34.7

Q ss_pred             CcccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          10 KKFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        10 ~~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.|-+-+.++++.|+..... +....+-+.++|+||+|||+++..+..++
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~-~~~~~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHhcc
Confidence            3456666666778888864200 01122357899999999999999998554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00033  Score=67.87  Aligned_cols=25  Identities=44%  Similarity=0.658  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++.+.++|+||||||++++.+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3456789999999999999999844

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00052  Score=66.94  Aligned_cols=26  Identities=31%  Similarity=0.615  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+.++|+||||||++++.++..+
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHh
Confidence            34557899999999999999998543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.34  E-value=7.5e-05  Score=72.31  Aligned_cols=24  Identities=38%  Similarity=0.412  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+-+.|+|+||||||++++.+...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            345779999999999999999743

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=0.00066  Score=65.35  Aligned_cols=25  Identities=36%  Similarity=0.623  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++.+.++|+||||||+|++.+...
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHHH
Confidence            4456899999999999999999844

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00047  Score=62.43  Aligned_cols=44  Identities=25%  Similarity=0.496  Sum_probs=34.8

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+||+--.+++.+.|....     .+ -..|.|+||.|||+++..++..
T Consensus        23 ~~igRd~Ei~~l~~iL~r~~-----k~-n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQRRT-----KN-NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS-----SC-EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHhccC-----CC-CeEEEecCCcccHHHHHHHHHH
Confidence            45799888889999999752     33 3578999999999999887743

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.0029  Score=61.67  Aligned_cols=26  Identities=42%  Similarity=0.622  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.+.|+|+||||||+|+..+...+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh
Confidence            34567799999999999999998554

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.013  Score=53.66  Aligned_cols=36  Identities=19%  Similarity=0.027  Sum_probs=29.1

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +-++.|++..      ...-+.++|+||+|||+++..+.+.+
T Consensus         4 ~~l~~~i~~~------~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2           4 ETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             HHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4467888864      55679999999999999999887543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00021  Score=66.42  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSY   85 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~   85 (978)
                      +.++|+|+||+|||||+..++..+..         ....+++++|...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~---------~~~~v~~~~~~~~   40 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKS---------SGVPVDGFYTEEV   40 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHH---------TTCCCEEEECCEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHH---------CCCEEEEEEeccc
Confidence            56899999999999999999977642         2445666676643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.60  E-value=0.00044  Score=61.49  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhc
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +++++|+|.|||||||+++.+++
T Consensus         2 kklIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998873

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.58  E-value=0.0042  Score=59.55  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=28.1

Q ss_pred             ccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          12 FFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        12 f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      |+|.+-.++++.+-+..-    ...+.-++|.|.||+||+.+|+.+-.
T Consensus         2 ~v~~S~~~~~~~~~~~~~----a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKI----SCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHH----TTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             eEecCHHHHHHHHHHHHH----hCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            555555555443333321    11334589999999999999999863

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.53  E-value=0.00045  Score=63.34  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++++||+|.|||||||+++.+.+.+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            47999999999999999999997764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00051  Score=62.17  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +..||+|+|||||||+++.+.++|.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5689999999999999999986653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.45  E-value=0.00046  Score=63.59  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.||+|.|||||||++..+.+.|
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998665

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00041  Score=63.07  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +++||+|.||||||||+..++..+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999996653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00065  Score=61.76  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.++++|.|.|||||||+++.+.+++
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            67899999999999999999998554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00079  Score=62.75  Aligned_cols=29  Identities=34%  Similarity=0.722  Sum_probs=24.8

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          33 KPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        33 ~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++..+++||.|+|||||||++..+.+++
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567899999999999999999998554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.28  E-value=0.00096  Score=60.89  Aligned_cols=26  Identities=31%  Similarity=0.492  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+++++|.|+|||||||++..+.+.+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998664

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.12  E-value=0.00082  Score=61.29  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++++|+|+|||||||++..+.+++
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            3688999999999999999998654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.11  E-value=0.0037  Score=60.31  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ...+..|+|+||+|||+|+..++.+.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55789999999999999999998653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.08  E-value=0.00089  Score=62.58  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.+.||+|-||||||||+..+...+
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.98  E-value=0.0013  Score=61.13  Aligned_cols=26  Identities=42%  Similarity=0.755  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .++++||.|+|||||||+++.+++++
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45899999999999999999998543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.96  E-value=0.0011  Score=61.50  Aligned_cols=25  Identities=44%  Similarity=0.796  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..+.+|.|+|||||||++..+.++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5578999999999999999999854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.00072  Score=63.05  Aligned_cols=25  Identities=24%  Similarity=0.219  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.||+|.|||||||++..+.+.+
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.84  E-value=0.0011  Score=60.20  Aligned_cols=23  Identities=52%  Similarity=0.722  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+|+|+|||||||++..+.+.+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.019  Score=54.95  Aligned_cols=44  Identities=23%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..+||+--.+++.+.|....     .+.+ .|.|+||+|||+|+..++..
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~-----k~n~-lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRR-----KNNP-LLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS-----SCEE-EEECCTTSSHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHhcCc-----cCCc-EEECCCCCcHHHHHHHHHHH
Confidence            35799888888999998642     3444 59999999999999988743

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.77  E-value=0.0027  Score=62.71  Aligned_cols=26  Identities=38%  Similarity=0.492  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+.++|+|+||||||+|++.+..++
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999998665

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.66  E-value=0.0016  Score=60.07  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +++..|.|.|||||||+++.+.+.|.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999986653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.66  E-value=0.0028  Score=57.12  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=20.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...++.+.|.|||||||++..+..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            566888899999999999998863

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.65  E-value=0.021  Score=53.48  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++.|.|+.|||||||++.+.--+.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            456999999999999999998875543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.55  E-value=0.0028  Score=57.45  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+-..+|+|+|||||||++..+.+++
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            34458999999999999999998654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.47  E-value=0.0021  Score=59.28  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +-.++|.|+|||||||++..+.++
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999744

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.45  E-value=0.0025  Score=58.85  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+...|.|+||+|||||++.+.+++.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999986653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.44  E-value=0.039  Score=50.41  Aligned_cols=66  Identities=18%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhh-----hhhccceeeeccccCCCCccCHHHHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQH-----NLRKKLLAYHFCQSYDLATFSVQNFIQSLVE  101 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~-----~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~  101 (978)
                      .+.++.|.|+.|||||||.+.+..-+...+..-.-     ......++|..-....+..-+....++....
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~   96 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS   96 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHH
Confidence            45789999999999999999998766543211100     0012234444322223556677777766543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.036  Score=51.85  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||++.+.--+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            45799999999999999999987433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.40  E-value=0.0022  Score=57.52  Aligned_cols=25  Identities=32%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++++|+|.+|||||||+..++..|.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4889999999999999999997765

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0025  Score=59.12  Aligned_cols=23  Identities=43%  Similarity=0.765  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+++|.|+|||||||+++.+.++
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999854

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.18  E-value=0.0041  Score=56.56  Aligned_cols=22  Identities=55%  Similarity=0.729  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.|+|+||||||||+..++..+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhcC
Confidence            6799999999999999998654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.94  E-value=0.0077  Score=53.96  Aligned_cols=37  Identities=14%  Similarity=0.146  Sum_probs=30.8

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ..+..|+.+.     .+.+.+|++|+|++|||+++..++.-+
T Consensus        41 ~~l~~~l~~~-----PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          41 GALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-----CCceEEEEECCCCccHHHHHHHHHHHh
Confidence            5678899753     477899999999999999999888554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.89  E-value=0.064  Score=49.76  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      .+.++.|.|+.|||||||++.+.-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            456999999999999999997763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.85  E-value=0.004  Score=56.07  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..+|.|.|||||||+++.+.++|
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            346688999999999999998554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.83  E-value=0.0037  Score=57.11  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|.|+|||||||++..+.+++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999998553

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.74  E-value=0.02  Score=58.41  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=32.3

Q ss_pred             cccccccchHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHh
Q psy9384          11 KFFCREWAFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        11 ~f~~r~w~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      ..+||+--.+++.++|....     .+.+ .|.|+||.|||+|+..++
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~-----k~n~-llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRT-----KNNP-VLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSS-----CCCC-EEEECTTSCHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHhcCC-----CCCC-eEECCCCCCHHHHHHHHH
Confidence            35799888889999998642     4444 455999999999987665

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.67  E-value=0.0053  Score=56.91  Aligned_cols=24  Identities=33%  Similarity=0.137  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      -+.-|+|++|||||||++.+.+.+
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            345599999999999999998654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.66  E-value=0.011  Score=59.99  Aligned_cols=35  Identities=26%  Similarity=0.139  Sum_probs=28.5

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..|+.+.     ..++.++++|+||+|||+++..++..+
T Consensus       144 l~~~~~~~-----~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         144 LKCMVYNI-----PKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             HHHHHHCC-----TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhCC-----CCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            56677753     366789999999999999999999554

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.03  Score=52.11  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++.++-|-|+.|||||||++.+.--+
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45699999999999999999886433

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.53  E-value=0.1  Score=48.89  Aligned_cols=63  Identities=21%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhh---------hhhhhccceeeeccccCCCCccCHHHHHHH
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQ---------QHNLRKKLLAYHFCQSYDLATFSVQNFIQS   98 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~---------~~~~~~~~~~~ff~~~~~~~~~~~~~~l~s   98 (978)
                      .+.++-|-|+.|+|||||++.+..-+...+..-         ........++|.+-....-...++...++-
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~   98 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF   98 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHH
Confidence            456999999999999999999986654322100         011123557777655444444555555544

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.47  E-value=0.0052  Score=56.08  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|.|+|||||||++..+.+++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.35  E-value=0.0069  Score=58.60  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=25.6

Q ss_pred             HHHHHhcCCCCCCCCCc-eEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          22 LVHCLESKTNSKPGNNG-GALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~-~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +..|....     +..+ ++-|.|+||||||||+..++..|.
T Consensus        16 ~~~~~~~~-----~~~P~iIGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          16 IPEWFETG-----NKCPLFIFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             HHHHHTTT-----CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-----CCCCEEEEeECCCCCCHHHHHHHHHHHHH
Confidence            45665532     2444 445799999999999999986653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.33  E-value=0.0059  Score=55.63  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|.|+|||||||++..+.+++
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998554

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.31  E-value=0.0061  Score=54.16  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|.|.|||||||+++.+.+.|
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5677999999999999998543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.23  E-value=0.0065  Score=57.07  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.++.|.||+||||++..+...+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999998543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.21  E-value=0.021  Score=53.37  Aligned_cols=27  Identities=26%  Similarity=0.303  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++-|.|+.|||||||.+.+.--+.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            456899999999999999998875543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.0078  Score=57.11  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++.+|.|+|||||||+++.+++++
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            588999999999999999998553

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.0062  Score=55.34  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+|.|+|||||||++..+.++
T Consensus         3 I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.05  E-value=0.0085  Score=54.81  Aligned_cols=21  Identities=48%  Similarity=0.705  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|+|||||||++..+.++
T Consensus         9 IiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455799999999999999854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.01  E-value=0.0086  Score=55.00  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=18.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++. |.|+|||||||++..+.++
T Consensus         5 rii-l~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           5 RAV-LLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             EEE-EECCTTSSHHHHHHHHHHH
T ss_pred             EEE-EECCCCCCHHHHHHHHHHH
Confidence            444 5799999999999999844

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.0078  Score=54.69  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..|.|+|||||||+++.+.++
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            456799999999999999854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.90  E-value=0.0088  Score=53.41  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+|.|.|||||||++..+.+.|
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4456999999999999998554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.88  E-value=0.072  Score=51.12  Aligned_cols=38  Identities=24%  Similarity=0.204  Sum_probs=28.8

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +...+.+    .-..+++..|.|+||+|||+++-.++.+...
T Consensus        25 LD~ll~G----Glp~G~~~li~G~pGsGKT~~~lq~~~~~~~   62 (254)
T d1pzna2          25 LDKLLGG----GIETQAITEVFGEFGSGKTQLAHTLAVMVQL   62 (254)
T ss_dssp             HHHHHTS----SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             HHHhhcC----CccCCEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence            4555554    2235679999999999999999999876654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.83  E-value=0.0083  Score=55.23  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ++..|.|.||+||||+++.+.+.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3678899999999999999986653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.62  E-value=0.042  Score=51.35  Aligned_cols=26  Identities=35%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||+..+.--+
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            45699999999999999999998544

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.60  E-value=0.015  Score=52.74  Aligned_cols=24  Identities=17%  Similarity=0.183  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++++|.|++|+|||||+..+.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998553

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.58  E-value=0.066  Score=52.26  Aligned_cols=56  Identities=16%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhc
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSS  105 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~  105 (978)
                      .+.+..|.|.||+|||+++..++-+..        ...+..|.||.+.      .++..+.+.++.+...
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a--------~~~g~~v~~~s~E------~~~~~~~~r~~~~~~~   89 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWG--------TAMGKKVGLAMLE------ESVEETAEDLIGLHNR   89 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHH--------HTSCCCEEEEESS------SCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhh--------hhcccceeEeeec------cchhhHHhHHHHHhhc
Confidence            345778899999999999999884421        1124567766543      2455566666666554

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.43  E-value=0.018  Score=57.20  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.++|+||||||.|++.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            44557899999999999999844

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.018  Score=58.33  Aligned_cols=25  Identities=36%  Similarity=0.582  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +++.+|+|+||+|||+++..++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHH
Confidence            6899999999999999998766443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.19  E-value=0.019  Score=56.33  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++++.++|+||||||.|+..+...
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            4578899999999999999999733

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.14  E-value=0.013  Score=55.39  Aligned_cols=44  Identities=18%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFSSS  106 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~~~  106 (978)
                      +..|.|+|||||||+++.+++++.              +.  |.        +.-.++|.++..-...
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg--------------~~--~i--------stGdl~R~~a~~~~~~   48 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG--------------FT--YL--------DTGAMYRAATYMALKN   48 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC--------------CE--EE--------EHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--------------Cc--EE--------CHHHHHHHHHHHHHHc
Confidence            356889999999999999985542              11  22        4567888877766554

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.09  E-value=0.035  Score=53.29  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             HHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          21 KLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        21 ~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+..||..    ..+....+|++|+|++|||+++..+..-+
T Consensus        92 ~l~~~L~~----~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          92 VFLGWATK----KFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHTT----CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHcC----CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45778865    33477899999999999999999887443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.02  Score=53.59  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +.-|+|++||||||+++.+.+.+..
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhch
Confidence            4568999999999999999887753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.35  E-value=0.073  Score=50.85  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+++..|.|+||+|||+|+.+++.+.+
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~   59 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQ   59 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            567899999999999999999986654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.64  E-value=0.19  Score=46.27  Aligned_cols=26  Identities=27%  Similarity=0.263  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      ++.++-|-|+.|||||||...+.--+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            45699999999999999999997544

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.60  E-value=0.045  Score=47.13  Aligned_cols=28  Identities=25%  Similarity=0.289  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+-++.+.|+-|+|||++++.++..+.-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            3458999999999999999999988754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.39  E-value=0.039  Score=50.05  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.|.|++|+|||+|+..+++..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            457899999999999999998554

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.076  Score=49.00  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.+..|.|+.|+||||++..+.++|.
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35667789999999999999987764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.12  E-value=0.048  Score=49.72  Aligned_cols=20  Identities=35%  Similarity=0.345  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q psy9384          39 GALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +.-|+|.+||||||++..+-
T Consensus         5 IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            45589999999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.05  Score=50.00  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+++|.|++|+|||+|+..+++.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            68899999999999999999854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=91.02  E-value=0.035  Score=53.06  Aligned_cols=24  Identities=38%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +..|.|.||+|||||+..+.+++.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            567899999999999999986643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=90.93  E-value=0.081  Score=47.33  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=27.2

Q ss_pred             chHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          18 AFVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        18 ~~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +|.++..|+..+      . --+.|.|.||+|||+|...++..
T Consensus         3 ~~~~~~~~~~~k------~-~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           3 LFTRIWRLFNHQ------E-HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHHHTTS------C-EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCC------e-EEEEEECCCCCCHHHHHHHHhcC
Confidence            456666787763      2 33668899999999999999854

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.88  E-value=0.058  Score=53.38  Aligned_cols=27  Identities=30%  Similarity=0.260  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +...++=|+|.||+|||||+..++.++
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            456679999999999999999998653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.057  Score=48.35  Aligned_cols=24  Identities=13%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +++++|.|+.|+|||+|+..+++.
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHh
Confidence            478999999999999999998843

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.73  E-value=0.052  Score=49.32  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.|.|++|+|||+|+..+++.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999999854

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.04  E-value=0.091  Score=54.02  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          20 VKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        20 ~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +.|++++..       .+|++.++|+.||||||.+..+++++.
T Consensus       148 ~~l~~l~~~-------~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         148 DNFRRLIKR-------PHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             HHHHHHHTS-------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHhh-------hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            356777765       568999999999999999999997653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.071  Score=49.25  Aligned_cols=20  Identities=35%  Similarity=0.567  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q psy9384          39 GALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +.-|+|++||||||++..+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            66789999999999999775

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.077  Score=52.54  Aligned_cols=27  Identities=30%  Similarity=0.416  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          35 GNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        35 ~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +....+-|+|.||+|||||+..++.++
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            456788999999999999999998554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=89.89  E-value=0.079  Score=48.80  Aligned_cols=20  Identities=40%  Similarity=0.499  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q psy9384          39 GALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +.-|+|++||||||++..+.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            56689999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.82  E-value=0.053  Score=50.31  Aligned_cols=26  Identities=31%  Similarity=0.238  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +++..|.|.+||||||++..+.++|.
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35777889999999999999987663

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.74  E-value=0.084  Score=48.26  Aligned_cols=25  Identities=36%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      -+..|.|+.||||||++..+.+++.
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3677899999999999999987764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.64  E-value=0.11  Score=49.61  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+.+..|.|.||+|||+++-.++.+...
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4578999999999999999999866543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.56  E-value=0.09  Score=46.19  Aligned_cols=25  Identities=36%  Similarity=0.481  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+..+.|.|.+|+|||+++..+++.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3456889999999999999999854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.49  E-value=0.096  Score=46.01  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +..+.|.|++|+|||+++..+++.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            456889999999999999999865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.37  E-value=0.097  Score=51.85  Aligned_cols=21  Identities=38%  Similarity=0.737  Sum_probs=16.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh
Q psy9384          38 GGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +.+.|.|+||||||+.+..-|
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHH
Confidence            457899999999998776544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.093  Score=49.31  Aligned_cols=28  Identities=18%  Similarity=0.334  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+.+..|.|+||+|||+|+-.++.+...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999866543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.99  E-value=0.083  Score=50.18  Aligned_cols=21  Identities=29%  Similarity=0.202  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q psy9384          39 GALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +..|+|++||||||++..+.+
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999974

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.089  Score=49.98  Aligned_cols=27  Identities=26%  Similarity=0.209  Sum_probs=23.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      +++..|.|.-||||||++..+.+++..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            468889999999999999999988753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.65  E-value=0.09  Score=48.56  Aligned_cols=23  Identities=30%  Similarity=0.315  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ..|.|..||||||+++.+.+.|.
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999986653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.12  Score=50.34  Aligned_cols=38  Identities=18%  Similarity=0.072  Sum_probs=26.4

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      ...++..+   .....-++-|.|++||||||++..+...|.
T Consensus        68 ~~~fl~~~---~~k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          68 LEQFLGTN---GQRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             HHHHHTCC----CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             HHHHhccc---CCCCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            35566543   122233667899999999999999986664

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.16  E-value=0.12  Score=45.09  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.-+.|.|.+|+|||+++..+++.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3467889999999999999998855

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.14  E-value=0.16  Score=48.49  Aligned_cols=36  Identities=17%  Similarity=0.127  Sum_probs=27.3

Q ss_pred             HHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          22 LVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        22 ~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +.+.+.+    .-...++..|.|+||+|||+++.+++.+.
T Consensus        26 LD~~lgG----Gip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          26 FDKLLGG----GIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             HHHHTTS----SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             HHHhhcC----CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5555554    23356789999999999999999998543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=88.05  E-value=0.073  Score=53.54  Aligned_cols=22  Identities=36%  Similarity=0.776  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhc
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +-+.|.|+||+|||+|++.+..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4589999999999999998864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.98  E-value=0.12  Score=51.46  Aligned_cols=21  Identities=43%  Similarity=0.700  Sum_probs=16.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHh
Q psy9384          38 GGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      +.++|.|.||||||+.+..-+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHH
Confidence            458899999999998776543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=87.90  E-value=0.12  Score=50.96  Aligned_cols=25  Identities=40%  Similarity=0.531  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      +-+.|+|++||||||++..++...-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            3478899999999999999997653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.88  E-value=0.19  Score=46.10  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=27.3

Q ss_pred             hHHHHHHHhcCCCCCCCCCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          19 FVKLVHCLESKTNSKPGNNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        19 ~~~~~~wl~~~~~~~~~~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++++.+|+.+         +...+.|.+|+|||+|.-.+.-.
T Consensus        86 ~~~L~~~l~~---------kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHhcC---------CeEEEECCCCCCHHHHHHhhcch
Confidence            3678888875         46788999999999999999844

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=87.85  E-value=0.16  Score=46.21  Aligned_cols=57  Identities=18%  Similarity=0.097  Sum_probs=38.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS  104 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~  104 (978)
                      .++++.+.|++|+||||.++.+..++..         .+..|+..=   -+..|--...=|+.++..+-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~---------~g~kV~lit---~Dt~R~gA~eQL~~~a~~l~   61 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN---------LGKKVMFCA---GDTFRAAGGTQLSEWGKRLS   61 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT---------TTCCEEEEC---CCCSSTTHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH---------CCCcEEEEE---eccccccchhhHhhcccccC
Confidence            5678999999999999999988754432         133455332   34455556666777777665

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.64  E-value=0.13  Score=47.60  Aligned_cols=28  Identities=29%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      ++.+..|.|.-||||||++..+.+.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            5678888999999999999999988753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.52  E-value=0.13  Score=48.51  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIV   58 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii   58 (978)
                      .+.+..|.|.||+|||+++..++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            45788999999999999998776

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=87.10  E-value=0.14  Score=44.59  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.|.|.||+|||+|...++.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999873

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.98  E-value=0.17  Score=46.85  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .++-|-|+.|||||||++.+.--+.
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            5888999999999999999985553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.91  E-value=0.19  Score=45.88  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          34 PGNNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        34 ~~~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +....++.+.|++|+||||.++.+..++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456788999999999999999887554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=86.89  E-value=0.18  Score=45.94  Aligned_cols=57  Identities=18%  Similarity=0.165  Sum_probs=37.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS  104 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~  104 (978)
                      +.+++.+.|++|+||||.++.+..++..         .+..|+..=   -+..|-....-|+.....+-
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~---------~g~kV~lit---~Dt~R~gA~eQL~~~a~~l~   65 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKG---------KGRRPLLVA---ADTQRPAAREQLRLLGEKVG   65 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH---------TTCCEEEEE---CCSSCHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH---------CCCcEEEEe---cccccchHHHHHHHHHHhcC
Confidence            5678899999999999999999855421         123344222   24455555566777777664

>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins
domain: Endonuclease VIII-like 1 (NEIL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.26  Score=29.91  Aligned_cols=29  Identities=17%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             hHHHHHHHhcCCCC-----CCCCCceEEEEcCCC
Q psy9384          19 FVKLVHCLESKTNS-----KPGNNGGALIIGGPG   47 (978)
Q Consensus        19 ~~~~~~wl~~~~~~-----~~~~~~~l~l~G~pG   47 (978)
                      +..|++||..--..     .....+..|+.|.||
T Consensus         7 ys~F~~WLqCY~~pgM~sL~D~~GRTIWF~GdpG   40 (44)
T d1tdha3           7 FAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPG   40 (44)
T ss_dssp             HHHHHHHCSSTTCTTCEEEECTTSCEEEESSCCC
T ss_pred             HHHHHHHHHHHcCCchhhhhccCCCEEEecCCCC
Confidence            45789999864211     223578999999999

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=86.08  E-value=0.2  Score=46.90  Aligned_cols=27  Identities=37%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+..+-|.|+.|||||||++.+..-+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            456899999999999999999986554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=86.02  E-value=0.2  Score=49.37  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          37 NGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        37 ~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+.+.+.|+||+|||.|++.+.+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhh
Confidence            346888999999999999999854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.97  E-value=0.2  Score=47.23  Aligned_cols=27  Identities=26%  Similarity=0.331  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++-|.|+.|||||||+..+..-+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC
Confidence            456899999999999999999875443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=85.87  E-value=0.21  Score=46.83  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++-|.|+.|||||||++.+..-+.
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            457899999999999999999875543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=85.85  E-value=0.18  Score=44.34  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.||+|||+|...++..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999998743

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.84  E-value=0.15  Score=48.18  Aligned_cols=26  Identities=19%  Similarity=0.196  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      ++..|.|+.||||||+++.+.++|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            56788999999999999999988753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.22  Score=46.88  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++-|.|+.|||||||++.+..-+.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            457899999999999999999875554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=85.44  E-value=0.26  Score=44.77  Aligned_cols=57  Identities=18%  Similarity=0.082  Sum_probs=35.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS  104 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~  104 (978)
                      ...++.+.|++|+||||.++.+..++..         .+..|+..=+   +..|--...=|+.++..+-
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~---------~g~kV~lit~---Dt~R~gA~eQL~~~a~~l~   64 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQ---------QGKSVMLAAG---DTFRAAAVEQLQVWGQRNN   64 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHT---------TTCCEEEECC---CTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH---------CCCcEEEEec---ccccccchhhhhhhhhhcC
Confidence            4568999999999999999998755432         1234444332   2333334444666666554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.36  E-value=0.24  Score=46.84  Aligned_cols=26  Identities=38%  Similarity=0.500  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++-|.|+.|||||||++.+.--+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            55799999999999999999997433

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=85.16  E-value=0.25  Score=46.94  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ..++.-|.|+||+|||+|+-.++..
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHH
Confidence            5679999999999999999998854

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=85.03  E-value=0.23  Score=45.23  Aligned_cols=57  Identities=14%  Similarity=0.130  Sum_probs=31.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCCCchhhhhhhhccceeeeccccCCCCccCHHHHHHHHHHHHh
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAESSFSQQHNLRKKLLAYHFCQSYDLATFSVQNFIQSLVEQFS  104 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~l~sl~~QL~  104 (978)
                      ...++.+.|++|+||||.++.+..++..         .+..|+..-++   ..|--...=|+..+..+-
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~---------~g~kV~lit~D---t~R~ga~eQL~~~a~~l~   67 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKK---------KGFKVGLVGAD---VYRPAALEQLQQLGQQIG   67 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHH---------TTCCEEEEECC---CSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH---------CCCceEEEEee---ccccchhHHHHHhccccC
Confidence            4578888999999999999988754321         13445554433   333344444566655554

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.94  E-value=0.15  Score=48.87  Aligned_cols=26  Identities=15%  Similarity=0.142  Sum_probs=19.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      +..+.-|+|++||||||++..+.+.+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence            45689999999999999999887554

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.59  E-value=0.25  Score=43.78  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|+..++..
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999988753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.52  E-value=0.23  Score=43.53  Aligned_cols=20  Identities=15%  Similarity=0.411  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.+.|.||+|||+|+..++.
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            46789999999999998884

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.27  E-value=0.23  Score=43.83  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.+|+|||+|+..++..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            568899999999999998744

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.93  E-value=0.28  Score=47.12  Aligned_cols=28  Identities=32%  Similarity=0.286  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+.++-|.|+.|||||||++.+..-+..
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCcC
Confidence            4578999999999999999999866543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.84  E-value=0.26  Score=43.31  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.|.|.||+|||+|+..++.
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            46789999999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=83.82  E-value=0.27  Score=43.01  Aligned_cols=21  Identities=33%  Similarity=0.393  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|...+...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            568999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.82  E-value=0.25  Score=43.05  Aligned_cols=21  Identities=33%  Similarity=0.363  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.||+|||+|+..++..
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999843

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.80  E-value=0.25  Score=43.69  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|+..++..
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            457899999999999998844

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.77  E-value=0.2  Score=46.41  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      ++..|+|-.|||||||...++.+
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            47889999999999999999865

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=0.16  Score=47.31  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=21.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHhcCCC
Q psy9384          38 GGALIIGG-PGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        38 ~~l~l~G~-pG~GKS~l~~~ii~~l~   62 (978)
                      +-++|+|. +|+||||++..+...|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            45889998 69999999999996664

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.44  E-value=0.23  Score=44.48  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .-+.|.|.||+|||+|...+...
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            34679999999999999999744

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=83.40  E-value=0.27  Score=47.52  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .+..|.|.||+|||+|+..++-+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            57889999999999999887643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=83.39  E-value=0.32  Score=44.05  Aligned_cols=21  Identities=14%  Similarity=0.352  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q psy9384          39 GALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ...|.|.||+|||||+..+..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            588999999999999999974

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.3  Score=43.84  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.||+|||+|+..++..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            457899999999999999854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.32  E-value=0.23  Score=46.87  Aligned_cols=26  Identities=27%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPS   61 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l   61 (978)
                      .+.++.|.|+.|||||||++.+..-+
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            45689999999999999999886443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.29  E-value=0.46  Score=45.12  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          38 GGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        38 ~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      --+.|.|.||+|||+|.-++...
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            35778899999999999999854

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.71  E-value=0.29  Score=43.22  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.||+|||+|+..++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999998843

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.63  E-value=0.3  Score=43.68  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.+.|.||+|||+|+..++.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            46889999999999999874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.59  E-value=0.3  Score=43.12  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.||+|||+|+..++..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            677899999999999988743

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.52  E-value=0.33  Score=42.74  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|...++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            457799999999999998853

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=82.34  E-value=0.36  Score=45.04  Aligned_cols=27  Identities=30%  Similarity=0.271  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFPSA   62 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~l~   62 (978)
                      .+.++-|-|+.|||||||++.+.--+.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456999999999999999999985553

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=0.32  Score=42.65  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|+..++..
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999999854

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.26  E-value=0.32  Score=42.84  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|+..++..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999999843

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.97  E-value=0.33  Score=43.00  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|+..++..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999998743

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.75  E-value=0.24  Score=39.70  Aligned_cols=25  Identities=4%  Similarity=0.012  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFPSAE   63 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~l~~   63 (978)
                      .+|++|-.|+|||+|+..+...|.+
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999998766643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.73  E-value=0.35  Score=42.82  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.+.|.||+|||+|+..++.
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            56889999999999999874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=0.35  Score=42.35  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.||+|||+|+..++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            457799999999999998743

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=81.34  E-value=0.36  Score=42.73  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q psy9384          39 GALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      -+.+.|.||+|||+|...++..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3778999999999999999754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.32  E-value=0.35  Score=42.71  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.|.|.+|+|||+|+..++..
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            668999999999999998743

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.29  E-value=0.36  Score=42.45  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.+|+|||+|...++..
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            457899999999999998844

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.24  E-value=0.37  Score=42.27  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.+|+|||+|...++..
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            467899999999999999854

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.18  E-value=0.37  Score=42.19  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.|.|.+|+|||+|+..++.
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            55779999999999999884

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.86  E-value=0.37  Score=42.20  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.||+|||+|...++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            467899999999999998854

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.83  E-value=0.39  Score=42.62  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHhcC
Q psy9384          36 NNGGALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        36 ~~~~l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      .++...|.|.||+|||+|+..++..
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999854

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=0.37  Score=42.58  Aligned_cols=20  Identities=35%  Similarity=0.667  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      +.+.|.||+|||+|+..++.
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            56889999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=80.51  E-value=0.46  Score=42.31  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q psy9384          39 GALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        39 ~l~l~G~pG~GKS~l~~~ii~   59 (978)
                      =+.+.|.||+|||+|...+..
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            367899999999999999863

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=80.45  E-value=0.39  Score=41.72  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy9384          40 ALIIGGPGSGKTTLCKEIVF   59 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~   59 (978)
                      ..+.|.||+|||+|+..++.
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            45889999999999999973

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.14  E-value=0.43  Score=41.67  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy9384          40 ALIIGGPGSGKTTLCKEIVFP   60 (978)
Q Consensus        40 l~l~G~pG~GKS~l~~~ii~~   60 (978)
                      +.+.|.+|+|||+|...++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            468899999999999999843