Psyllid ID: psy9408

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII
cccccccHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHcccccEEEEEEEEEEcccEEEEEEEccccEEEEEEcccEEEEEccccccccccccHHHHHHccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHcccc
cEEcHHHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHcccEEEEEEEEEEEEccEEEEEEEEccEEEEEEEEccEEEEEcHHHcccccccHHHHHHcccccEEEEcHHHHcccccccEEEEEEEccccccccEEcccHHHHHHHHHHccccc
MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVkkenpqlvilgkqsidsdnnQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSlpaiittdlrmnepRYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKEshknnlgiKVKNVIELIDKLKNEAKII
msinpfdeIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTqeiedgketillslpaiittdlrmnepRYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIkvkeshknnlgikvknvIELIDKLKNEAKII
MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMniikarkkninifkiDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII
*********AIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSID****QTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKL*******
MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNVNINTGLN******************VIELIDKLKNEAKII
MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII
*SINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNE****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHxxxxxxxxxxxxxxxxxxxxxAKII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query219 2.2.26 [Sep-21-2011]
Q9HZP6249 Electron transfer flavopr yes N/A 0.990 0.871 0.547 2e-62
Q9LSW8251 Electron transfer flavopr no N/A 0.995 0.868 0.509 1e-58
Q54YZ4250 Electron transfer flavopr yes N/A 0.977 0.856 0.537 3e-58
P53575249 Electron transfer flavopr yes N/A 0.990 0.871 0.479 2e-57
Q7F9U3253 Electron transfer flavopr yes N/A 0.990 0.857 0.502 3e-57
A2XQV4253 Electron transfer flavopr N/A N/A 0.990 0.857 0.502 5e-57
Q2TBV3255 Electron transfer flavopr yes N/A 0.981 0.843 0.479 1e-54
Q9DCW4255 Electron transfer flavopr yes N/A 0.981 0.843 0.475 1e-54
Q5RFK0255 Electron transfer flavopr yes N/A 0.981 0.843 0.470 3e-54
Q68FU3255 Electron transfer flavopr yes N/A 0.981 0.843 0.479 3e-54
>sp|Q9HZP6|ETFB_PSEAE Electron transfer flavoprotein subunit beta OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=etfB PE=3 SV=1 Back     alignment and function desciption
 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/219 (54%), Positives = 165/219 (75%), Gaps = 2/219 (0%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI 60
           MS+NPF EIA+E A+RL+E      EI+A+S G    +E L+ A+A+G DRAIL+E++  
Sbjct: 33  MSMNPFCEIAVEEAVRLKEKGVAT-EIVAVSVGPTAAQEQLRTALALGADRAILVESNDE 91

Query: 61  LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKN 120
           L SL+VAKLL+ +V KE PQLVILGKQ+IDSDNNQTGQMLAAL  + Q TFASK+ +   
Sbjct: 92  LNSLAVAKLLKAVVDKEQPQLVILGKQAIDSDNNQTGQMLAALTGYAQGTFASKVEV-AG 150

Query: 121 NKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNVN 180
           +K+ VT+EI+ G +T+ L+LPAI+TTDLR+NEPRY +L NI+KA+KK +++   D L V+
Sbjct: 151 DKVNVTREIDGGLQTVALNLPAIVTTDLRLNEPRYASLPNIMKAKKKPLDVVTPDALGVS 210

Query: 181 INTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII 219
             + +  +KV+     + GIKVK+V EL++KLKNEAK+I
Sbjct: 211 TASTVKTLKVEAPAARSAGIKVKSVAELVEKLKNEAKVI 249
The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase).
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
>sp|Q9LSW8|ETFB_ARATH Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1 Back     alignment and function description
>sp|Q54YZ4|ETFB_DICDI Electron transfer flavoprotein subunit beta OS=Dictyostelium discoideum GN=etfb PE=3 SV=1 Back     alignment and function description
>sp|P53575|ETFB_BRAJA Electron transfer flavoprotein subunit beta OS=Bradyrhizobium japonicum (strain USDA 110) GN=etfB PE=3 SV=2 Back     alignment and function description
>sp|Q7F9U3|ETFB_ORYSJ Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ETFB PE=3 SV=1 Back     alignment and function description
>sp|A2XQV4|ETFB_ORYSI Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza sativa subsp. indica GN=ETFB PE=3 SV=1 Back     alignment and function description
>sp|Q2TBV3|ETFB_BOVIN Electron transfer flavoprotein subunit beta OS=Bos taurus GN=ETFB PE=2 SV=3 Back     alignment and function description
>sp|Q9DCW4|ETFB_MOUSE Electron transfer flavoprotein subunit beta OS=Mus musculus GN=Etfb PE=1 SV=3 Back     alignment and function description
>sp|Q5RFK0|ETFB_PONAB Electron transfer flavoprotein subunit beta OS=Pongo abelii GN=ETFB PE=2 SV=3 Back     alignment and function description
>sp|Q68FU3|ETFB_RAT Electron transfer flavoprotein subunit beta OS=Rattus norvegicus GN=Etfb PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
340786353250 electron transfer flavoprotein subunit b 0.990 0.868 0.609 4e-71
399019418251 electron transfer flavoprotein, beta sub 0.990 0.864 0.588 9e-70
319791560249 electron transfer flavoprotein alpha/bet 0.990 0.871 0.593 1e-69
319792923249 electron transfer flavoprotein alpha/bet 0.990 0.871 0.593 1e-69
311108126254 electron transfer flavoprotein subunit b 0.990 0.854 0.579 2e-69
239816347249 electron transfer flavoprotein alpha/bet 0.990 0.871 0.593 2e-69
395761189249 electron transfer flavoprotein subunit b 0.990 0.871 0.584 3e-69
311104929249 electron transfer flavoprotein subunit b 0.990 0.871 0.579 3e-69
398812033249 electron transfer flavoprotein, beta sub 0.990 0.871 0.593 4e-69
293604187249 electron transfer flavoprotein beta subu 0.990 0.871 0.579 5e-69
>gi|340786353|ref|YP_004751818.1| electron transfer flavoprotein subunit beta [Collimonas fungivorans Ter331] gi|340551620|gb|AEK60995.1| Electron transfer flavoprotein, beta subunit [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/220 (60%), Positives = 173/220 (78%), Gaps = 3/220 (1%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIET-DT 59
           MS+NPFDEIA+E A RL+E   K+ E+IAISCG  +C+E L+ AMA+G DR IL++T DT
Sbjct: 33  MSMNPFDEIAVEEATRLKEG-GKVTEVIAISCGVTQCQETLRTAMAIGADRGILVDTADT 91

Query: 60  ILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKK 119
            LQ L+VAKLL+ +  KE PQL+ILGKQ+ID D NQTGQMLAALL WPQATFASK+VL+ 
Sbjct: 92  DLQPLAVAKLLKAVADKEQPQLIILGKQAIDDDCNQTGQMLAALLGWPQATFASKVVLE- 150

Query: 120 NNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELNV 179
           + K+ VT+E++ G ETI L+LPAIITTDLR+NEPRYVTL NI+KA+KK +++FK  +L V
Sbjct: 151 DGKVTVTREVDGGLETIALTLPAIITTDLRLNEPRYVTLPNIMKAKKKTLDVFKPADLGV 210

Query: 180 NINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII 219
           ++   L  +KV E  K + GIKV +V  L+ KLKNEAK++
Sbjct: 211 DVAPRLKTLKVVEPAKRSAGIKVPDVATLVAKLKNEAKVL 250

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|399019418|ref|ZP_10721566.1| electron transfer flavoprotein, beta subunit [Herbaspirillum sp. CF444] gi|398098028|gb|EJL88321.1| electron transfer flavoprotein, beta subunit [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|319791560|ref|YP_004153200.1| electron transfer flavoprotein alpha/beta-subunit [Variovorax paradoxus EPS] gi|315594023|gb|ADU35089.1| Electron transfer flavoprotein alpha/beta-subunit [Variovorax paradoxus EPS] Back     alignment and taxonomy information
>gi|319792923|ref|YP_004154563.1| electron transfer flavoprotein alpha/beta-subunit [Variovorax paradoxus EPS] gi|315595386|gb|ADU36452.1| Electron transfer flavoprotein alpha/beta-subunit [Variovorax paradoxus EPS] Back     alignment and taxonomy information
>gi|311108126|ref|YP_003980979.1| electron transfer flavoprotein subunit beta 2 [Achromobacter xylosoxidans A8] gi|310762815|gb|ADP18264.1| electron transfer flavoprotein subunit beta 2 [Achromobacter xylosoxidans A8] Back     alignment and taxonomy information
>gi|239816347|ref|YP_002945257.1| electron transfer flavoprotein alpha/beta-subunit [Variovorax paradoxus S110] gi|239802924|gb|ACS19991.1| Electron transfer flavoprotein alpha/beta-subunit [Variovorax paradoxus S110] Back     alignment and taxonomy information
>gi|395761189|ref|ZP_10441858.1| electron transfer flavoprotein subunit beta [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|311104929|ref|YP_003977782.1| electron transfer flavoprotein subunit beta 1 [Achromobacter xylosoxidans A8] gi|310759618|gb|ADP15067.1| electron transfer flavoprotein subunit beta 1 [Achromobacter xylosoxidans A8] Back     alignment and taxonomy information
>gi|398812033|ref|ZP_10570814.1| electron transfer flavoprotein, beta subunit [Variovorax sp. CF313] gi|398079250|gb|EJL70117.1| electron transfer flavoprotein, beta subunit [Variovorax sp. CF313] Back     alignment and taxonomy information
>gi|293604187|ref|ZP_06686595.1| electron transfer flavoprotein beta subunit [Achromobacter piechaudii ATCC 43553] gi|292817412|gb|EFF76485.1| electron transfer flavoprotein beta subunit [Achromobacter piechaudii ATCC 43553] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
TIGR_CMR|CPS_3687250 CPS_3687 "electron transfer fl 0.990 0.868 0.506 1.7e-52
UNIPROTKB|Q48K87249 etfB "Electron transfer flavop 0.990 0.871 0.520 9.2e-52
DICTYBASE|DDB_G0277991250 etfb "electron transfer flavop 0.986 0.864 0.518 2.4e-51
UNIPROTKB|Q4KFP4249 etfB "Electron transfer flavop 0.990 0.871 0.515 1.1e-50
TAIR|locus:2176446251 ETFBETA "electron transfer fla 0.995 0.868 0.477 3.6e-50
UNIPROTKB|Q0BWK0248 eftB "Electron transfer flavop 0.986 0.870 0.454 9.8e-48
TIGR_CMR|CBU_1118250 CBU_1118 "electron transfer fl 0.990 0.868 0.461 2e-47
TIGR_CMR|SO_3145249 SO_3145 "electron transfer fla 0.990 0.871 0.470 2e-47
CGD|CAL0003951266 orf19.6612 [Candida albicans ( 0.990 0.815 0.478 7.1e-45
UNIPROTKB|Q59NK2266 CaO19.6612 "Putative uncharact 0.990 0.815 0.478 7.1e-45
TIGR_CMR|CPS_3687 CPS_3687 "electron transfer flavoprotein, beta subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 111/219 (50%), Positives = 154/219 (70%)

Query:     1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI 60
             M+INPF EIA+E A+RL+E+     E+IAIS GNK C+E L+ A+A+G DRAI I+TD  
Sbjct:    33 MAINPFCEIAVEEAVRLKEAGIAT-EVIAISVGNKSCQEQLRTALALGADRAIQIDTDES 91

Query:    61 LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKN 120
             L +L++AKLLQ +V++E PQL+ILGKQSIDSDNNQTGQMLAAL   PQ TFAS +V  + 
Sbjct:    92 LDALNIAKLLQKVVEEEQPQLIILGKQSIDSDNNQTGQMLAALTGMPQGTFAS-VVKVEG 150

Query:   121 NKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMXXXXXXXXXXXXXXXDELNVN 180
              K+ VT+E++ G +T+ L+LPAI+TTDLR+NEPRY +L                 +  ++
Sbjct:   151 EKVNVTREVDGGLQTVALNLPAIVTTDLRLNEPRYASLPNIMKAKRKPLAVKPAADFGID 210

Query:   181 INTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII 219
             +     ++KV    +   GI V+++ EL++KLKNEAK+I
Sbjct:   211 LTARTKLLKVTPPAQRQAGIVVESIDELVEKLKNEAKVI 249
GO:0009055 "electron carrier activity" evidence=ISS
UNIPROTKB|Q48K87 etfB "Electron transfer flavoprotein, beta subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277991 etfb "electron transfer flavoprotein beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KFP4 etfB "Electron transfer flavoprotein, beta subunit" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TAIR|locus:2176446 ETFBETA "electron transfer flavoprotein beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0BWK0 eftB "Electron transfer flavoprotein, beta subunit" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1118 CBU_1118 "electron transfer flavoprotein, beta subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3145 SO_3145 "electron transfer flavoprotein, beta subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
CGD|CAL0003951 orf19.6612 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59NK2 CaO19.6612 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q68FU3ETFB_RATNo assigned EC number0.47960.98170.8431yesN/A
Q6UAQ8ETFB_PIGNo assigned EC number0.46150.98170.8431yesN/A
P52040ETFB_CLOABNo assigned EC number0.31810.94060.7953yesN/A
Q54YZ4ETFB_DICDINo assigned EC number0.53700.97710.856yesN/A
P38117ETFB_HUMANNo assigned EC number0.47050.98170.8431yesN/A
Q9HZP6ETFB_PSEAENo assigned EC number0.54790.99080.8714yesN/A
Q2TBV3ETFB_BOVINNo assigned EC number0.47960.98170.8431yesN/A
P42940ETFB_YEASTNo assigned EC number0.46330.97260.8160yesN/A
Q7F9U3ETFB_ORYSJNo assigned EC number0.50220.99080.8577yesN/A
Q9LSW8ETFB_ARATHNo assigned EC number0.50900.99540.8685noN/A
A2XQV4ETFB_ORYSINo assigned EC number0.50220.99080.8577N/AN/A
P94550ETFB_BACSUNo assigned EC number0.31140.97710.8326yesN/A
Q9DCW4ETFB_MOUSENo assigned EC number0.47510.98170.8431yesN/A
P38975ETFB_PARDENo assigned EC number0.49320.98630.8571yesN/A
P53575ETFB_BRAJANo assigned EC number0.47940.99080.8714yesN/A
Q9UTH2ETFB_SCHPONo assigned EC number0.45580.96800.8346yesN/A
O85691ETFB_MEGELNo assigned EC number0.31810.75340.6111yesN/A
Q5RFK0ETFB_PONABNo assigned EC number0.47050.98170.8431yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
COG2086260 COG2086, FixA, Electron transfer flavoprotein, bet 2e-71
cd01714202 cd01714, ETF_beta, The electron transfer flavoprot 1e-65
smart00893185 smart00893, ETF, Electron transfer flavoprotein do 1e-40
cd01985181 cd01985, ETF, The electron transfer flavoprotein ( 6e-39
pfam01012160 pfam01012, ETF, Electron transfer flavoprotein dom 6e-29
PRK03359256 PRK03359, PRK03359, putative electron transfer fla 2e-13
PRK12342254 PRK12342, PRK12342, hypothetical protein; Provisio 3e-11
>gnl|CDD|224997 COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information 
 Score =  217 bits (555), Expect = 2e-71
 Identities = 95/229 (41%), Positives = 137/229 (59%), Gaps = 11/229 (4%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI 60
           +SINPFD  A+E A+RL+E      E+  ++ G  + +E L+ A+AMG DRAILI     
Sbjct: 33  LSINPFDLNAVEEALRLKEK-GYGGEVTVLTMGPPQAEEALREALAMGADRAILITDRAF 91

Query: 61  LQS--LSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLK 118
             +  L+ AK L   VKK  P LV+ GKQ+ID D  Q G +LA LL WPQ T+ SKI + 
Sbjct: 92  AGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIV 151

Query: 119 KNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDELN 178
              K+ V +E+E G ET+   LPA++T DLR+NEPRY +L  I+ A+KK +  + + +L 
Sbjct: 152 DGGKVTVERELEGGLETVEAPLPAVVTVDLRINEPRYPSLPGIMAAKKKPVKKWSLADLG 211

Query: 179 VNINT---GLNIIKVKESHKNNLGIKVKNVIE-----LIDKLKNEAKII 219
           +N+      L ++KV    +   G+KVK+  E     L++KLK E  I+
Sbjct: 212 LNVGLAGSPLKVVKVTPPPERKAGVKVKDGPEEIAAELVEKLKEEGVIL 260

Length = 260
>gnl|CDD|238847 cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>gnl|CDD|214890 smart00893, ETF, Electron transfer flavoprotein domain Back     alignment and domain information
>gnl|CDD|238943 cd01985, ETF, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>gnl|CDD|216243 pfam01012, ETF, Electron transfer flavoprotein domain Back     alignment and domain information
>gnl|CDD|179569 PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 219
PRK03359256 putative electron transfer flavoprotein FixA; Revi 100.0
PRK12342254 hypothetical protein; Provisional 100.0
COG2086260 FixA Electron transfer flavoprotein, beta subunit 100.0
KOG3180|consensus254 100.0
cd01714202 ETF_beta The electron transfer flavoprotein (ETF) 100.0
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 100.0
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 99.97
cd01715168 ETF_alpha The electron transfer flavoprotein (ETF) 99.92
PLN00022 356 electron transfer flavoprotein subunit alpha; Prov 99.83
PRK03363313 fixB putative electron transfer flavoprotein FixB; 99.82
PRK11916312 electron transfer flavoprotein subunit YdiR; Provi 99.81
COG2025313 FixB Electron transfer flavoprotein, alpha subunit 99.8
KOG3954|consensus336 99.29
cd00293130 USP_Like Usp: Universal stress protein family. The 96.57
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 95.85
cd01987124 USP_OKCHK USP domain is located between the N-term 95.83
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 94.57
PF00582140 Usp: Universal stress protein family; InterPro: IP 93.69
PRK15118144 universal stress global response regulator UspA; P 92.66
PRK10116142 universal stress protein UspC; Provisional 92.39
PF07355 349 GRDB: Glycine/sarcosine/betaine reductase selenopr 92.04
PRK15456142 universal stress protein UspG; Provisional 91.74
PRK15005144 universal stress protein F; Provisional 91.44
PF07287362 DUF1446: Protein of unknown function (DUF1446); In 91.29
PRK10481224 hypothetical protein; Provisional 91.18
PRK11175305 universal stress protein UspE; Provisional 90.84
TIGR01918 431 various_sel_PB selenoprotein B, glycine/betaine/sa 90.74
PF02585128 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR0037 90.66
TIGR01917 431 gly_red_sel_B glycine reductase, selenoprotein B. 90.28
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 90.27
KOG0081|consensus219 89.92
PRK11175305 universal stress protein UspE; Provisional 89.75
PRK09982142 universal stress protein UspD; Provisional 89.12
PRK10490 895 sensor protein KdpD; Provisional 89.04
TIGR01860461 VNFD nitrogenase vanadium-iron protein, alpha chai 88.94
PF04007 335 DUF354: Protein of unknown function (DUF354); Inte 88.68
TIGR01284457 alt_nitrog_alph nitrogenase alpha chain. This mode 88.6
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 87.53
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 86.79
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 86.6
PRK02910519 light-independent protochlorophyllide reductase su 85.77
CHL00076513 chlB photochlorophyllide reductase subunit B 85.56
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 85.24
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 85.15
TIGR03446283 mycothiol_Mca mycothiol conjugate amidase Mca. Myc 84.51
TIGR01278511 DPOR_BchB light-independent protochlorophyllide re 84.35
cd01977415 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: 84.34
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 82.69
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 82.45
TIGR03445284 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy 81.34
cd03466429 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup 80.03
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=3.8e-56  Score=381.35  Aligned_cols=213  Identities=24%  Similarity=0.368  Sum_probs=198.0

Q ss_pred             CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchH--HHHHHHHhCCCCEEEEEecCC--CCCHHHHHHHHHHHHHh
Q psy9408           1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCK--EILQIAMAMGVDRAILIETDT--ILQSLSVAKLLQVIVKK   76 (219)
Q Consensus         1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~--~~lr~~~a~GaD~v~~v~~~~--~~d~~~~A~~la~~ik~   76 (219)
                      |+|||||++|||+|+||||+.| |++|++++|||++++  +.+|++++||||++|+++|+.  +.|++++|++||+++++
T Consensus        32 ~~iN~~D~~AlE~Alrlke~~~-g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~  110 (256)
T PRK03359         32 AKISQYDLNAIEAACQLKQQAA-EAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQK  110 (256)
T ss_pred             cccChhhHHHHHHHHHHhhhcC-CCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHH
Confidence            5899999999999999999863 479999999998865  679999999999999999874  67999999999999999


Q ss_pred             cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEE-EeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCC
Q psy9408          77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV-LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRY  155 (219)
Q Consensus        77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~-~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~  155 (219)
                      .+|||||||.+|+|++++||||+||++||||++|+|.+++ ++ ++.++++|..++|.+++++++|||+||..+.|+|||
T Consensus       111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~-~~~v~v~r~~e~g~e~ve~~lPavvtV~~~~n~PR~  189 (256)
T PRK03359        111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKIISLT-DDTLTVERELEDEVETLSIPLPAVIAVSTDINSPQI  189 (256)
T ss_pred             hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEEEEec-CCEEEEEEEcCCeEEEEEEcCCEEEEEeCCCCCCCC
Confidence            9999999999999999999999999999999999999994 67 889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHccCcceEeeccccCCcCCCCeEEEEEeeccCCCCeeEe-c-----hHHHHHHHHhhc
Q psy9408         156 VTLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKV-K-----NVIELIDKLKNE  215 (219)
Q Consensus       156 p~l~~~~~A~~~~i~~~~~~~l~~~~~~~~~v~~~~~p~~~~~~~~~-~-----~~~~l~~~L~~~  215 (219)
                      |||++||+|+||||++|+++|||+++.+++++.++++|++++++.++ +     .+++|++.|+++
T Consensus       190 psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~~~~~~~i~~g~~~e~a~~lv~~L~~~  255 (256)
T PRK03359        190 PSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKI  255 (256)
T ss_pred             CCHHHHHHhcCCCceEeCHHHcCCCcCCCcEEEEEecCCCCcCcEEEecCCcHHHHHHHHHHHHhh
Confidence            99999999999999999999999987678889999999988777775 3     379999999864

>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>KOG3180|consensus Back     alignment and domain information
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional Back     alignment and domain information
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional Back     alignment and domain information
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional Back     alignment and domain information
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion] Back     alignment and domain information
>KOG3954|consensus Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length Back     alignment and domain information
>PRK10481 hypothetical protein; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family Back     alignment and domain information
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3 Back     alignment and domain information
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>KOG0081|consensus Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional Back     alignment and domain information
>CHL00076 chlB photochlorophyllide reductase subunit B Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca Back     alignment and domain information
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit Back     alignment and domain information
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase Back     alignment and domain information
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1efp_B252 Electron Transfer Flavoprotein (Etf) From Paracoccu 2e-49
1efv_B255 Three-Dimensional Structure Of Human Electron Trans 2e-48
2a1t_S255 Structure Of The Human Mcad:etf E165betaa Complex L 1e-47
1o94_C264 Ternary Complex Between Trimethylamine Dehydrogenas 7e-20
>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus Denitrificans Length = 252 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 145/223 (65%), Gaps = 7/223 (3%)
Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILI-ETDT 59
           MS+NPFDEIA+E AIRL+E   + +EIIA+S G K+  E L+ A+AMG DRAIL+   D 
Sbjct: 33  MSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQAAETLRTALAMGADRAILVVAADD 91
Query: 60  ILQS---LSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116
           + Q    L+VAK+L  + + E  +L+I GKQ+ID+D N TGQMLAA+L W QATFASK+ 
Sbjct: 92  VQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVE 151
Query: 117 LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMXXXXXXXXXXXXXXXDE 176
           + +  K  VT+E++ G +TI +SLPA++T DLR+NEPRY +L                 +
Sbjct: 152 I-EGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAAD 210
Query: 177 LNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKII 219
             V++   L ++ V+E      GIKV +V EL+ KLK EA +I
Sbjct: 211 YGVDVAPRLEVVSVREPEGRKAGIKVGSVDELVGKLK-EAGVI 252
>pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human Electron Transfer Flavoprotein To 2.1 A Resolution Length = 255 Back     alignment and structure
>pdb|2A1T|S Chain S, Structure Of The Human Mcad:etf E165betaa Complex Length = 255 Back     alignment and structure
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And Electron Transferring Flavoprotein Length = 264 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1efv_B255 Electron transfer flavoprotein; electron transport 3e-96
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 1e-93
1o97_C264 Electron transferring flavoprotein beta-subunit; F 2e-91
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Length = 255 Back     alignment and structure
 Score =  280 bits (718), Expect = 3e-96
 Identities = 104/222 (46%), Positives = 152/222 (68%), Gaps = 6/222 (2%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDTI 60
            S+NPF EIA+E A+RL+E    +KE+IA+SCG  +C+E ++ A+AMG DR I +E    
Sbjct: 36  HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPA 94

Query: 61  ----LQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116
               L  L VA++L  + +KE   LV+LGKQ+ID D NQTGQM A  L+WPQ TFAS++ 
Sbjct: 95  EAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVT 154

Query: 117 LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDE 176
           L+  +K+ V +EI+ G ET+ L LPA++T DLR+NEPRY TL NI+KA+KK I + K  +
Sbjct: 155 LE-GDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGD 213

Query: 177 LNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKI 218
           L V++ + L++I V++  +   G+KV+   +L+ KLK   +I
Sbjct: 214 LGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Length = 252 Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Length = 264 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
1efv_B255 Electron transfer flavoprotein; electron transport 100.0
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 100.0
1o97_C264 Electron transferring flavoprotein beta-subunit; F 100.0
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 99.97
1o97_D320 Electron transferring flavoprotein alpha-subunit; 99.96
1efv_A315 Electron transfer flavoprotein; electron transport 99.94
1efp_A307 ETF, protein (electron transfer flavoprotein); ele 99.92
3fet_A166 Electron transfer flavoprotein subunit alpha RELA 99.91
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 96.78
3dlo_A155 Universal stress protein; unknown function, struct 96.28
2z08_A137 Universal stress protein family; uncharacterized c 96.22
3s3t_A146 Nucleotide-binding protein, universal stress PROT 96.21
3fg9_A156 Protein of universal stress protein USPA family; A 95.88
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 95.82
3tnj_A150 Universal stress protein (USP); structural genomic 95.75
3fdx_A143 Putative filament protein / universal stress PROT; 95.7
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 95.1
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 95.01
3loq_A294 Universal stress protein; structural genomics, PSI 94.98
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 94.92
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 94.89
3mt0_A290 Uncharacterized protein PA1789; structural genomic 94.5
1q77_A138 Hypothetical protein AQ_178; structural genomics, 93.06
3olq_A319 Universal stress protein E; structural genomics, P 92.49
3mt0_A290 Uncharacterized protein PA1789; structural genomic 92.38
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 92.22
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 92.05
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 91.55
2ixd_A242 LMBE-related protein; hexamer, deacetylase, rossma 91.25
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 90.56
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 90.2
1uan_A227 Hypothetical protein TT1542; rossmann-like, struct 89.85
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 89.72
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 89.62
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 87.05
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 86.8
3olq_A319 Universal stress protein E; structural genomics, P 86.58
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 85.37
3loq_A294 Universal stress protein; structural genomics, PSI 84.63
1q74_A303 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- gluco 84.43
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 84.23
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 84.18
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 84.01
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 83.45
2xdq_B511 Light-independent protochlorophyllide reductase S; 82.36
2h31_A425 Multifunctional protein ADE2; alpha-beta-alpha, li 82.31
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 82.15
3vot_A 425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 81.61
3u7q_B523 Nitrogenase molybdenum-iron protein beta chain; mu 81.35
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 81.19
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 80.72
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 80.14
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
Probab=100.00  E-value=2.1e-54  Score=370.27  Aligned_cols=215  Identities=48%  Similarity=0.806  Sum_probs=203.0

Q ss_pred             CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEe-cC---CCCCHHHHHHHHHHHHHh
Q psy9408           1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIE-TD---TILQSLSVAKLLQVIVKK   76 (219)
Q Consensus         1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~-~~---~~~d~~~~A~~la~~ik~   76 (219)
                      |+|||+|++|||+|++|+|+ |.+.+|++++||++.+++.+|++++||+|++|+++ ++   .++++++||++|++++++
T Consensus        36 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a~~~lr~ala~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~  114 (255)
T 1efv_B           36 HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEK  114 (255)
T ss_dssp             EEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTTHHHHHHHHHHHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChhHHHHHHHHHhcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHh
Confidence            47999999999999999997 42229999999998788999999999999999999 76   478999999999999999


Q ss_pred             cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCCC
Q psy9408          77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYV  156 (219)
Q Consensus        77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p  156 (219)
                      .+||+||||+|+.|++++|++|+||++||||++|+|++++++ ++.++++|++|+|.+++++++|+|+|++++.|+||||
T Consensus       115 ~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~l~~~-~~~~~v~R~i~gG~~~v~~~~P~VvTv~~~~~~pR~~  193 (255)
T 1efv_B          115 EKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLE-GDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYA  193 (255)
T ss_dssp             HTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEEEE-TTEEEEEEEETTEEEEEEEESSEEEEECGGGCCCCCC
T ss_pred             cCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEEEEEc-CCeEEEEEEcCCcEEEEEECCCEEEEEeCCCCCcCCC
Confidence            999999999999999999999999999999999999999998 8999999999999989999999999999999999999


Q ss_pred             CHHHHHHHccCcceEeeccccCCcCCCCeEEEEEeeccCCCCeeEechHHHHHHHHhhcCC
Q psy9408         157 TLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAK  217 (219)
Q Consensus       157 ~l~~~~~A~~~~i~~~~~~~l~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~l~~~L~~~~~  217 (219)
                      ||++||+|+|+||++|+++|||++..|++++.++++|++|+.++++++.++|+++|++++.
T Consensus       194 sl~~im~A~kk~i~~~~~~dl~~~~~~~~~v~~~~~p~~~~~~~~i~~~~~l~~~L~~~~~  254 (255)
T 1efv_B          194 TLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGR  254 (255)
T ss_dssp             CHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEECSSHHHHHHHHHHTTC
T ss_pred             CHHHHHHhccCCeeEecHHHcCCCCCCCeEEEEEecCCCCcCCEEECCHHHHHHHHHHhcC
Confidence            9999999999999999999999998899999999999998889999988999999998664
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Back     alignment and structure
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* Back     alignment and structure
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2 Back     alignment and structure
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1 Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A* Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus} Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B* Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 219
d1efpb_246 c.26.2.3 (B:) Small, beta subunit of electron tran 1e-54
d1efvb_252 c.26.2.3 (B:) Small, beta subunit of electron tran 2e-54
d3clsc1262 c.26.2.3 (C:1-262) Small, beta subunit of electron 8e-41
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Length = 246 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Paracoccus denitrificans [TaxId: 266]

 Score =  173 bits (439), Expect = 1e-54
 Identities = 104/216 (48%), Positives = 150/216 (69%), Gaps = 6/216 (2%)

Query: 1   MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILI----E 56
           MS+NPFDEIA+E AIRL+E   + +EIIA+S G K+  E L+ A+AMG DRAIL+    +
Sbjct: 33  MSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQAAETLRTALAMGADRAILVVAADD 91

Query: 57  TDTILQSLSVAKLLQVIVKKENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIV 116
               ++ L+VAK+L  + + E  +L+I GKQ+ID+D N TGQMLAA+L W QATFASK+ 
Sbjct: 92  VQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVE 151

Query: 117 LKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYVTLMNIIKARKKNINIFKIDE 176
           ++   K  VT+E++ G +TI +SLPA++T DLR+NEPRY +L NI+KA+KK ++     +
Sbjct: 152 IE-GAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAAD 210

Query: 177 LNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKL 212
             V++   L ++ V+E      GIKV +V EL+ KL
Sbjct: 211 YGVDVAPRLEVVSVREPEGRKAGIKVGSVDELVGKL 246
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
d1efvb_252 Small, beta subunit of electron transfer flavoprot 100.0
d1efpb_246 Small, beta subunit of electron transfer flavoprot 100.0
d3clsc1262 Small, beta subunit of electron transfer flavoprot 100.0
d3clsd1192 Large, alpha subunit of electron transfer flavopro 99.94
d1efva1188 Large, alpha subunit of electron transfer flavopro 99.86
d1efpa1183 Large, alpha subunit of electron transfer flavopro 99.73
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 95.14
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 94.97
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 94.54
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 94.48
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 92.2
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 90.59
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 88.74
d1rqba2303 Transcarboxylase 5S subunit, N-terminal domain {Pr 88.57
d1uana_227 Hypothetical protein TT1542 {Thermus thermophilus 88.42
d1a9xa3127 Carbamoyl phosphate synthetase (CPS), large subuni 86.69
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.18
d1gu7a2189 2,4-dienoyl-CoA reductase {Yeast (Candida tropical 85.98
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 85.94
d1a9xa4121 Carbamoyl phosphate synthetase (CPS), large subuni 85.33
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 84.22
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-57  Score=387.42  Aligned_cols=216  Identities=48%  Similarity=0.806  Sum_probs=206.6

Q ss_pred             CCCCHhhHHHHHHHHHhhhhcCCCcEEEEEEecCcchHHHHHHHHhCCCCEEEEEecCC----CCCHHHHHHHHHHHHHh
Q psy9408           1 MSINPFDEIAIESAIRLRESSNKIKEIIAISCGNKKCKEILQIAMAMGVDRAILIETDT----ILQSLSVAKLLQVIVKK   76 (219)
Q Consensus         1 ~~iNp~D~~Ale~A~~l~e~~g~g~~V~av~~G~~~~~~~lr~~~a~GaD~v~~v~~~~----~~d~~~~A~~la~~ik~   76 (219)
                      |+|||||++|||+|+||+|++| |..|++++|||+.+++.+|++++||+|++++++++.    ..|+.+++.++++++++
T Consensus        33 ~~iNp~D~~AlE~Al~lke~~g-g~~v~v~~~gp~~a~~~lr~ala~Gad~avli~~~~~~~~~~~~~~~a~~~a~~~~~  111 (252)
T d1efvb_          33 HSMNPFCEIAVEEAVRLKEKKL-VKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEK  111 (252)
T ss_dssp             EEECHHHHHHHHHHHHHHHTTS-CSEEEEEEEESTTHHHHHHHHHHHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cccCcccHHHHHHHHHHhhhcC-CceEEEEEecchhHHHHHHHHHhcCCcceEEEEecccccccccHHHHHHHHHHHHhc
Confidence            5799999999999999999975 568999999999999999999999999999998653    56899999999999999


Q ss_pred             cCCCEEEEcccccCCCcCcHHHHHHHHcCCCcccceeEEEEeeCCeEEEEEEcCCeEEEEEEcCCEEEEEecCCCCCCCC
Q psy9408          77 ENPQLVILGKQSIDSDNNQTGQMLAALLNWPQATFASKIVLKKNNKILVTQEIEDGKETILLSLPAIITTDLRMNEPRYV  156 (219)
Q Consensus        77 ~~~dlVl~G~~s~d~~~~~v~~~lA~~Lg~p~vt~v~~l~~~~~~~~~~~R~~~gG~~~~~~~~P~vvtv~~~~~~pr~p  156 (219)
                      .+|||||||.+|+|++++||||+||++||||++|+|.+++++ ++.++++|..++|.+++++++|||+||.++.|+||||
T Consensus       112 ~~~DLIl~G~~s~D~~tgqVg~~lAe~Lg~P~vt~v~~i~~~-~~~i~v~R~~e~g~e~ve~~lPavitv~~~~n~PR~p  190 (252)
T d1efvb_         112 EKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLE-GDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYA  190 (252)
T ss_dssp             HTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEEEE-TTEEEEEEEETTEEEEEEEESSEEEEECGGGCCCCCC
T ss_pred             cCCCEEEEeccchhccCCcHHHHHHHhcCCCceeEEEEEEEE-CCEEEEEEEcCCcEEEEEecCCEEEEeecCcCccCcc
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CHHHHHHHccCcceEeeccccCCcCCCCeEEEEEeeccCCCCeeEechHHHHHHHHhhcCCC
Q psy9408         157 TLMNIIKARKKNINIFKIDELNVNINTGLNIIKVKESHKNNLGIKVKNVIELIDKLKNEAKI  218 (219)
Q Consensus       157 ~l~~~~~A~~~~i~~~~~~~l~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~l~~~L~~~~~~  218 (219)
                      ||+++|+|+|++|++|+++|||++..|++++.++++|++|+.+++++++++|+++|+++++|
T Consensus       191 sl~~im~A~kk~i~~~~~~dlg~~~~s~~~v~~~~~p~~~~~g~~ie~~~~lv~~L~e~g~i  252 (252)
T d1efvb_         191 TLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI  252 (252)
T ss_dssp             CHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEECSSHHHHHHHHHHTTCC
T ss_pred             chhhHHHhccCCcEEeCHHHcCCCcCCCcEEEEEEcCCCCCCCeEeeCHHHHHHHHHhhcCC
Confidence            99999999999999999999999989999999999999999999999999999999998875
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1efpa1 c.26.2.3 (A:2-184) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure