Psyllid ID: psy941

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------

VRERGKDVRFVYKGLRSKLKEDKHGEAKSHSAPSSPTQLRKKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYFGDLRFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENESLDCLNLI

cccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEccccccccccccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEcccEEEEEcccccccccccccccccccccccc

cccccccHHHHHHccHEcccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHccEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHccccHHHHHHHHHHHHHcccccccccccEEEEEccccccEccccccccccccEEEEEEcccHHHEEEccccccccEEEEEccccEEEEEEccEEEEEEEEEcccccHHccccEEEccccEccccccccccccccccccccHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHccccHHHHHHHHHHHHHHccccccccccEEEEEccccccEccccccccccccEEEEEEcccHHHEEEccccccccEEEEEccccEEEEEEccEEEEEEEHHcccccccccccc

vrergkdvRFVYKGLRSKlkedkhgeakshsapssptqlrkkdisiplqsnkysplespdlspplninmDLMSDLQHvifkdcsptSVQKTMLQaipslpppavpakflpsnqshifnehcdgavkssILSNMLVINDFLSAEEEQSLLKEINQFIKRQRyeydhwddaihGFRETERSKWNEENTKIIARVqnlafppnvtpiQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRslyvmkddarykFTHEVLENeksyfgdlrfktfplihshqsstssnqshifnehcdgavkssILSNMLVINDFLSAEEEQSLLKEINQFIKRQRyeydhwddaihGFRETERSKWNEENTKIIARVqnlafppnvtpiQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRslyvmkddaryKFTHEVLenesldclnli

vrergkdvrfvYKGLrsklkedkhgeakshsapssptqlrkKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFreterskwneENTKIIARvqnlafppnVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVllkqrslyvmkDDARYKFTHEVLENEKSYFGDLRFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFreterskwneENTKIIARvqnlafppnVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVllkqrslyvmkDDARYKFThevlenesldclnli

VRERGKDVRFVYKGLRSKLKEDKHGEAKSHSAPSSPTQLRKKDISIPLQSNKYsplespdlspplNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYFGDLRFKTFPLIhshqsstssnqshIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENESLDCLNLI

********************************************************************MDLMSDLQHVIFKDCSPT**************************QSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYFGDLRFKTFPLI**************FNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENESLDCL***

********RFVYKG*************************************************PLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYFGDLRFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENES***LNL*

VRERGKDVRFVYKGLRSKLK********************KKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYFGDLRFKTFPLIH***********HIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENESLDCLNLI

*****KDVRFVYKGLRSKL****************************************DLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYFGDLRFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENESLDCLNLI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		487	2.2.26 [Sep-21-2011]
Q2M2S8		221	Alpha-ketoglutarate-depen	yes	N/A	0.347	0.764	0.526	4e-48
Q9BT30		221	Alpha-ketoglutarate-depen	yes	N/A	0.394	0.868	0.463	5e-48
Q9D6Z0		221	Alpha-ketoglutarate-depen	yes	N/A	0.349	0.769	0.529	8e-47
Q5UR03		210	Uncharacterized protein L	N/A	N/A	0.291	0.676	0.253	4e-05

>sp\|Q2M2S8\|ALKB7_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7 OS=Bos taurus GN=ALKBH7 PE=2 SV=1	Back alignment and function desciption

 Score =  192 bits (489), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 123/169 (72%)

Query: 124 AVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNE 183
           AV S +    +V   FLS  EE++L +E+   ++R+RYEYDHWD AIHGFRETE+S+W+E
Sbjct: 24  AVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFRETEKSRWSE 83

Query: 184 ENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVM 243
            +  I+ RVQ  AF P  T +  VHVLDLE +GYIK HVDS++FCG+TIAGLSLLS SVM
Sbjct: 84  ASRAILRRVQAAAFGPGQTLLSSVHVLDLEPQGYIKPHVDSIKFCGSTIAGLSLLSPSVM 143

Query: 244 KLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYFGDLRF 292
           +LV  +   + + +LL+  SLY+++  ARY F+HE+L +E+S+FG+ R 
Sbjct: 144 RLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEESFFGERRI 192

Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q9BT30\|ALKB7_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7 OS=Homo sapiens GN=ALKBH7 PE=2 SV=1	Back alignment and function description

>sp\|Q9D6Z0\|ALKB7_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7 OS=Mus musculus GN=Alkbh7 PE=2 SV=1	Back alignment and function description

>sp\|Q5UR03\|YL905_MIMIV Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		487
291224759		245	PREDICTED: spermatogenesis associated 11	0.355	0.706	0.572	6e-55
270012018		585	hypothetical protein TcasGA2_TC006115 [T	0.478	0.398	0.444	2e-52
189239805		230	PREDICTED: similar to CG14130 CG14130-PA	0.344	0.730	0.573	2e-51
443731178		233	hypothetical protein CAPTEDRAFT_163497 [	0.338	0.708	0.536	9e-49
390336638		327	PREDICTED: probable alpha-ketoglutarate-	0.320	0.477	0.583	2e-48
346469691		246	hypothetical protein [Amblyomma maculatu	0.349	0.691	0.552	4e-48
62955187		233	alkylated DNA repair protein alkB homolo	0.334	0.699	0.533	6e-48
431922360		221	Alkylated DNA repair protein alkB like p	0.344	0.760	0.535	2e-47
73987027		221	PREDICTED: probable alpha-ketoglutarate-	0.344	0.760	0.535	4e-47
444511956		221	putative alpha-ketoglutarate-dependent d	0.344	0.760	0.541	5e-47

>gi\|291224759\|ref\|XP_002732369.1\| PREDICTED: spermatogenesis associated 11-like [Saccoglossus kowalevskii]	Back alignment and taxonomy information

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 134/173 (77%)

Query: 115 HIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFR 174
           + F+E CD  ++  +L NMLV  DFL+  EEQSL KE+++++KR RYEYDHWDDAIHG++
Sbjct: 51  YYFHEKCDNKLRQYMLDNMLVYPDFLTEGEEQSLYKEVDKYVKRMRYEYDHWDDAIHGYK 110

Query: 175 ETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAG 234
           ETE S+W++ N +II RV+++AFPP V  +  VHV+DL   GYIK H+DSV+FCGN I G
Sbjct: 111 ETEFSRWSDSNKQIIQRVRDVAFPPGVQQLPLVHVIDLADNGYIKPHIDSVKFCGNIITG 170

Query: 235 LSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYF 287
           LSLLS S+M+LV +K K  +I +LLK RSLYVM+D AR+ +THE+L + +SYF
Sbjct: 171 LSLLSSSIMRLVHDKNKELKIDILLKPRSLYVMRDAARFDYTHEILPDSESYF 223

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi\|270012018\|gb\|EFA08466.1\| hypothetical protein TcasGA2_TC006115 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|189239805\|ref\|XP_001812052.1\| PREDICTED: similar to CG14130 CG14130-PA [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|443731178\|gb\|ELU16415.1\| hypothetical protein CAPTEDRAFT_163497 [Capitella teleta]	Back alignment and taxonomy information

>gi\|390336638\|ref\|XP_001197784.2\| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH7-like [Strongylocentrotus purpuratus]	Back alignment and taxonomy information

>gi\|346469691\|gb\|AEO34690.1\| hypothetical protein [Amblyomma maculatum]	Back alignment and taxonomy information

>gi\|62955187\|ref\|NP_001017609.1\| alkylated DNA repair protein alkB homolog 7 [Danio rerio] gi\|62204928\|gb\|AAH93288.1\| Zgc:112404 [Danio rerio]	Back alignment and taxonomy information

>gi\|431922360\|gb\|ELK19451.1\| Alkylated DNA repair protein alkB like protein 7 [Pteropus alecto]	Back alignment and taxonomy information

>gi\|73987027\|ref\|XP_854342.1\| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH7 isoform 1 [Canis lupus familiaris]	Back alignment and taxonomy information

>gi\|444511956\|gb\|ELV10006.1\| putative alpha-ketoglutarate-dependent dioxygenase ABH7 [Tupaia chinensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		487
ZFIN\|ZDB-GENE-050417-78		233	alkbh7 "alkB, alkylation repai	0.334	0.699	0.533	8.8e-47
RGD\|1598126		221	Alkbh7 "alkB, alkylation repai	0.342	0.755	0.544	7.1e-45
UNIPROTKB\|F1SBT3		221	ALKBH7 "Uncharacterized protei	0.344	0.760	0.529	2.4e-44
UNIPROTKB\|E2QVM9		221	ALKBH7 "Uncharacterized protei	0.344	0.760	0.535	3.1e-44
UNIPROTKB\|Q2M2S8		221	ALKBH7 "Alpha-ketoglutarate-de	0.347	0.764	0.529	3.9e-44
MGI\|MGI:1913650		221	Alkbh7 "alkB, alkylation repai	0.349	0.769	0.529	8.1e-44
UNIPROTKB\|Q9BT30		221	ALKBH7 "Alpha-ketoglutarate-de	0.344	0.760	0.523	2.2e-43
UNIPROTKB\|E2QUX1		255	ALKBH7 "Uncharacterized protei	0.211	0.403	0.543	4.2e-42
WB\|WBGene00012920		227	Y46G5A.35 [Caenorhabditis eleg	0.310	0.665	0.470	2.4e-35
WB\|WBGene00007581		591	alkb-8 [Caenorhabditis elegans	0.531	0.438	0.214	0.00054

ZFIN\|ZDB-GENE-050417-78 alkbh7 "alkB, alkylation repair homolog 7 (E. coli)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 87/163 (53%), Positives = 126/163 (77%)

Query:   125 VKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEE 184
             + S++   + V  +F+S EEE +L KE+   ++++RYE+DHWDDAIHG+RETER +W   
Sbjct:    51 ILSAMRGQVEVRQNFISEEEENALFKEVEAGLRKKRYEFDHWDDAIHGYRETERLQWGAA 110

Query:   185 NTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMK 244
             +  I+ RV+ +AFP     +  VHVLDL++KGYIK H+DSV+FCG+TIAGLSLLSDS+M+
Sbjct:   111 SENILRRVRTVAFPEGSPLLGPVHVLDLDKKGYIKPHIDSVKFCGSTIAGLSLLSDSIMR 170

Query:   245 LVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENEKSYF 287
             LV E   T  + +LL +RSLY+++DDAR+KFTHE+L++E+S+F
Sbjct:   171 LVPENNTTDRVDLLLSRRSLYILRDDARFKFTHEILKDEESFF 213

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD\|1598126 Alkbh7 "alkB, alkylation repair homolog 7 (E. coli)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SBT3 ALKBH7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QVM9 ALKBH7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2M2S8 ALKBH7 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1913650 Alkbh7 "alkB, alkylation repair homolog 7 (E. coli)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BT30 ALKBH7 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUX1 ALKBH7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

WB\|WBGene00012920 Y46G5A.35 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

WB\|WBGene00007581 alkb-8 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D6Z0	ALKB7_MOUSE	1, ., 1, 4, ., 1, 1, ., -	0.5294	0.3490	0.7692	yes	N/A
Q2M2S8	ALKB7_BOVIN	1, ., 1, 4, ., 1, 1, ., -	0.5266	0.3470	0.7647	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		487
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.97
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.97
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.94
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.92
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	99.91
COG3145		194	AlkB Alkylated DNA repair protein [DNA replication	99.91
KOG3200\|consensus		224		99.9
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	99.9
KOG3200\|consensus		224		99.88
COG3145		194	AlkB Alkylated DNA repair protein [DNA replication	99.86
KOG3959\|consensus		306		99.85
KOG4176\|consensus		323		99.75
KOG3959\|consensus		306		99.72
KOG4176\|consensus		323		99.47
KOG2731\|consensus		378		97.59
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	97.5
KOG2731\|consensus		378		97.49
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	97.46
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	97.43
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	97.03
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	96.42
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	95.81
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	95.52
PLN00052		310	prolyl 4-hydroxylase; Provisional	95.25
PF12933		253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	95.08
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	94.54
PLN00052		310	prolyl 4-hydroxylase; Provisional	94.17
PF12933		253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	90.23
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	90.15
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	89.89
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	89.44
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	88.99
KOG1591\|consensus		289		85.56
KOG1591\|consensus		289		80.38

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

Probab=99.97  E-value=1.3e-30  Score=246.83  Aligned_cols=163  Identities=26%  Similarity=0.336  Sum_probs=115.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHHHHHhh--cc------c-------cccCCCC-----cCCCC---cccccCCCCchhhHHH
Q psy941          132 NMLVINDFLSAEEEQSLLKEINQFIK--RQ------R-------YEYDHWD-----DAIHG---FRETERSKWNEENTKI  188 (487)
Q Consensus       132 Gl~~ipdfls~~Ee~~Ll~~i~~~l~--rr------r-------y~~~~w~-----~~i~g---~r~~~~~~w~~~~~~i  188 (487)
                      |++|++||||++|+++|+++|.+...  +.      .       +....|.     +.+++   ++..+.++|++.+..+
T Consensus         1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~~   80 (194)
T PF13532_consen    1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSRL   80 (194)
T ss_dssp             -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHHH
Confidence            89999999999999999999996311  11      0       1001121     11222   2233467888888888


Q ss_pred             HHHHHhhcC-CCCCCCCCeEEEeecCCCCCCcCCCCCCCc-cCCeEEEEecCCCeEEEEEecCCCCeEEEEEecCCcEEe
Q psy941          189 IARVQNLAF-PPNVTPIQYVHVLDLEQKGYIKAHVDSVRF-CGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYV  266 (487)
Q Consensus       189 ~~rl~~~~~-~~~~~~~d~~lVN~Y~pg~gI~~H~D~~~~-~g~~IaslSLGs~~vm~F~~~~~~~~~~~v~L~~gSLlV  266 (487)
                      ++++.+... ..+ ..||+|+||+|.+|++|++|+|+++. +|++||+||||++|+|.|++....+..+.|.|++|||||
T Consensus        81 ~~~~~~~~~~~~~-~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~v  159 (194)
T PF13532_consen   81 LERLVEATGIPPG-WRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLV  159 (194)
T ss_dssp             HHHHHHHHT-SHS-S--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEE
T ss_pred             HHHHHHHhccccC-CCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEE
Confidence            888876432 222 25899999999999999999999977 899999999999999999998766789999999999999


Q ss_pred             ecccccccccccccccccCC-----CCCcccc-cCc
Q psy941          267 MKDDARYKFTHEVLENEKSY-----FGDLRFK-TFP  296 (487)
Q Consensus       267 m~G~aRy~w~H~Ip~~~~d~-----~~g~RIs-TfR  296 (487)
                      |+|++|+.| |+|++.+.+.     .++.||| |||
T Consensus       160 m~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR  194 (194)
T PF13532_consen  160 MSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR  194 (194)
T ss_dssp             EETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred             eChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence            999999999 9999987643     5779999 998

...

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3200\|consensus	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>KOG3200\|consensus	Back alignment and domain information

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3959\|consensus	Back alignment and domain information

>KOG4176\|consensus	Back alignment and domain information

>KOG3959\|consensus	Back alignment and domain information

>KOG4176\|consensus	Back alignment and domain information

>KOG2731\|consensus	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>KOG2731\|consensus	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>KOG1591\|consensus	Back alignment and domain information

>KOG1591\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		487
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	9e-20
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	7e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	7e-05
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	2e-04
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	4e-04
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	4e-04

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345	Back alignment and structure

 Score = 89.5 bits (221), Expect = 9e-20
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 15/217 (6%)

Query: 80  FKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDF 139
           F     T   K     +          + +    + +           ++   ++V+ + 
Sbjct: 60  FARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEI 119

Query: 140 LSAEEEQSLLKEINQF---------IKRQRYEYDHWDDAIH--GFRETERSKWNEENTKI 188
           +S+EEE+ LL+ ++              +     H+    H       +    +     I
Sbjct: 120 ISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDI 179

Query: 189 IARVQNLAFPPNVTPIQY--VHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLV 246
                           +   + +   E    I AH+D+     + I  LSL S+ VM   
Sbjct: 180 CESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFK 239

Query: 247 DEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENE 283
                     V+L +RSL VM  ++RY +TH +   +
Sbjct: 240 HPDGIAVP--VMLPRRSLLVMTGESRYLWTHGITCRK 274

PyMOL of 3tht

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		487
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	100.0
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	99.97
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.96
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	99.96
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	99.95
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	99.94
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	99.93
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.92
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	97.47
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	97.02
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	96.91
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	96.41
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	96.29
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	95.12
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	94.0
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	91.77
3lfm_A		495	Protein FTO; FAT MASS and obesity associated (FTO)	89.58
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	86.26
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	81.17
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	80.44

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

Probab=100.00  E-value=1.7e-35  Score=303.10  Aligned_cols=195  Identities=20%  Similarity=0.279  Sum_probs=150.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHHHHH-----------hhccc-cccCCCCcCCCCccc---cc-CCCCc
Q psy941          119 EHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQF-----------IKRQR-YEYDHWDDAIHGFRE---TE-RSKWN  182 (487)
Q Consensus       119 ~~~~~~~~~~~~~Gl~~ipdfls~~Ee~~Ll~~i~~~-----------l~rrr-y~~~~w~~~i~g~r~---~~-~~~w~  182 (487)
                      .+|.......+++|++|++||||++||++|++.|+..           ++.|+ -.|+ +.+.+++...   .+ ..+||
T Consensus        99 ~~~~~~~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~~~~~~~~~l~~Rr~~~yG-~~Y~Ys~~~~~~~~p~p~~~P  177 (345)
T 3tht_A           99 VQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFG-YEFHYENNNVDKDKPLSGGLP  177 (345)
T ss_dssp             EEEEEEECCSCCTTEEEETTCSCHHHHHHHHTTCC----------------CEEECCC-------------------CCC
T ss_pred             ccccccccccCCCceEEEcCcCCHHHHHHHHHhcccCCccccccCcccccCceEEEEC-CcccccccccccCCCCCcCcC
Confidence            3466556678999999999999999999999988631           22232 1112 1222222211   12 24599


Q ss_pred             hhhHHHHHHHHhhcCCCCCCCCCeEEEeecCCCCCCcCCCCCCCccCCeEEEEecCCCeEEEEEecCCCCeEEEEEecCC
Q psy941          183 EENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQR  262 (487)
Q Consensus       183 ~~~~~i~~rl~~~~~~~~~~~~d~~lVN~Y~pg~gI~~H~D~~~~~g~~IaslSLGs~~vm~F~~~~~~~~~~~v~L~~g  262 (487)
                      +.+..+++|+.+..+..  ..||+|+||+|++|++|+||+|+++.||++||+||||++|+|.|++..  +..++|.|++|
T Consensus       178 ~~L~~l~~r~~~~~~~~--~~~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~--~~~~~l~L~~g  253 (345)
T 3tht_A          178 DICESFLEKWLRKGYIK--HKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPD--GIAVPVMLPRR  253 (345)
T ss_dssp             HHHHHHHHHHHHHTSCS--SCCSEEEEEEECTTCCEEEECCCTTTBCSCEEEEEESSCEEEEEECTT--SCEEEEEECTT
T ss_pred             HHHHHHHHHHHhcccCC--CCCCEEEEEEecCCCCEeeccCCchhcCCeEEEEECCCceeEEEccCC--CceEEEEcCCC
Confidence            99999999987644332  248999999999999999999999999999999999999999999975  35889999999


Q ss_pred             cEEeecccccccccccccccccCC----------------------CCCcccc-cCcccccCCCCCCCCccccccccccc
Q psy941          263 SLYVMKDDARYKFTHEVLENEKSY----------------------FGDLRFK-TFPLIHSHQSSTSSNQSHIFNEHCDG  319 (487)
Q Consensus       263 SLlVm~G~aRy~w~H~Ip~~~~d~----------------------~~g~RIs-TfR~~~~~~~~~~~~~~c~~~~~Cd~  319 (487)
                      |||||+|++|+.|+|+|++++.|+                      .++.||| |||++++  +    .|.|+|+.+||+
T Consensus       254 sLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~--~----~c~C~~~~~cd~  327 (345)
T 3tht_A          254 SLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQ--T----PCNCSYPLVCDS  327 (345)
T ss_dssp             EEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCS--S----CCCCSCTTTCTT
T ss_pred             cEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCC--C----CcCCCCCCcccC
Confidence            999999999999999999998754                      2678999 9999988  4    799999999999


Q ss_pred             ccccc
Q psy941          320 AVKSS  324 (487)
Q Consensus       320 ~~~~~  324 (487)
                      +.+..
T Consensus       328 ~~~~~  332 (345)
T 3tht_A          328 QRKEN  332 (345)
T ss_dssp             TTTTC
T ss_pred             CCccC
Confidence            76543

PyMOL of 3tht

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		487
d2iuwa1		210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	5e-08
d2iuwa1		210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	5e-08
d2fdia1		200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	6e-06
d2fdia1		200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	6e-06

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 5e-08
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 23/173 (13%)

Query: 130 LSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKII 189
           +S + +   F+  +E   +L+++ Q +  ++      D      R T            I
Sbjct: 18  VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRI 77

Query: 190 ARVQNLAFPP-------------NVTPIQYVHVLDLEQKGYIKAHVD--SVRFCGNTIAG 234
               N  + P               T    +  L   +K  +  H D          IA 
Sbjct: 78  TMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIAS 137

Query: 235 LSLLSDSVM--------KLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEV 279
           LS  +            +   + T  + + + L   +L +M+   +  + H V
Sbjct: 138 LSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRV 190

PyMOL of d2iuwa1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210	Back information, alignment and structure

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200	Back information, alignment and structure

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		487
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.97
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	99.96
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.93
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	99.92
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	92.25
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	88.13

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-31  Score=248.81  Aligned_cols=165  Identities=15%  Similarity=0.204  Sum_probs=127.3

Q ss_pred             CCCeEEEcCCCCHHHHHHHHHHHHHHhhc----------------cccccCCCCcCCCCcccccCCCCchhhHHHHHHHH
Q psy941          130 LSNMLVINDFLSAEEEQSLLKEINQFIKR----------------QRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQ  193 (487)
Q Consensus       130 ~~Gl~~ipdfls~~Ee~~Ll~~i~~~l~r----------------rry~~~~w~~~i~g~r~~~~~~w~~~~~~i~~rl~  193 (487)
                      ++||.|+|||||++||+.|++.|.+.+..                .+.-+....+.+++......+.|++.+..+.+++.
T Consensus        18 ~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~~~~~~d~~y~y~~~~~~~~~~~~~~l~~l~~~~~   97 (210)
T d2iuwa1          18 VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIE   97 (210)
T ss_dssp             CEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEEEEECCCTTSCHHHHCCBSSCCHHHHHHHHHHH
T ss_pred             cceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeeeeEEecCcCccccccccccCCCCcHHHHHHHHhhh
Confidence            45799999999999999999999874221                11101111112222223345779999999999988


Q ss_pred             hhcCCCCCCCCCeEEEeecCC-CCCCcCCCCCCCccC--CeEEEEecCCCeEEEEEecCCC--------CeEEEEEecCC
Q psy941          194 NLAFPPNVTPIQYVHVLDLEQ-KGYIKAHVDSVRFCG--NTIAGLSLLSDSVMKLVDEKTK--------TQEILVLLKQR  262 (487)
Q Consensus       194 ~~~~~~~~~~~d~~lVN~Y~p-g~gI~~H~D~~~~~g--~~IaslSLGs~~vm~F~~~~~~--------~~~~~v~L~~g  262 (487)
                      +.. ..   .+++|++|.|.+ +++|+||+|++..|+  ++||+||||++|+|.|++..+.        .+.++|.|++|
T Consensus        98 ~~~-~~---~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~~~~~~~~~~~~i~L~~g  173 (210)
T d2iuwa1          98 ENT-GH---TFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHG  173 (210)
T ss_dssp             HHH-SC---CCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC--------CCCEEEEEECTT
T ss_pred             hhc-Cc---cchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccccCCccCCCceEEEEcCCC
Confidence            753 22   368888888866 689999999998885  4899999999999999876431        35799999999


Q ss_pred             cEEeecccccccccccccccccCCCCCcccc-cCccccc
Q psy941          263 SLYVMKDDARYKFTHEVLENEKSYFGDLRFK-TFPLIHS  300 (487)
Q Consensus       263 SLlVm~G~aRy~w~H~Ip~~~~d~~~g~RIs-TfR~~~~  300 (487)
                      |||||.|++|+.|+|+||+++.  ..++||| |||++++
T Consensus       174 sl~vm~g~~~~~~~H~Ip~~~~--~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         174 TLLIMEGATQADWQHRVPKEYH--SREPRVNLTFRTVYP  210 (210)
T ss_dssp             CEEEEEETHHHHEEEEECCCSS--CCCCEEEEEEECCCC
T ss_pred             CEEEeCchhhCceEccCCccCC--CCCCeEEEEEEeecC
Confidence            9999999999999999999864  5789999 9999863

PyMOL of d2iuwa1

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure