Psyllid ID: psy9430

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MPGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYN
ccccccccEEEccccccHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHcccEEEEEEEccEEEccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccHHHHHHcccccccEEEHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccHEEEEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHHHHcEEEccccccccccccEEEcHHHHHHHHcccccEEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcc
mpgisrkpilidgrGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRcnvnpargpfhyraparifwktpilidgrGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRcnvnpargpfhyrapaRIFWKTvrgmtphklDRGAKALKRLKvyegippkyarrqrlcvptalrtvclkpgrsycsvgrishevgWKYKTIVRHLERKRREKSIEKIKLHTVYN
mpgisrkpilidgrGHLLGRLASIVAktilngnrVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAktilngnrVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVyegippkyarrqrlcvptalrtvclkpgrsycsvgrishevgwkyktivrhlerkrreksiekiklhtvyn
MPGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLerkrreksiekikLHTVYN
********ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLE******************
*****RK*ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC**NPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPAR*PFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTV**
MPGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYN
***ISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTV**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPGISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKIKLHTVYN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
Q8MUR4204 60S ribosomal protein L13 N/A N/A 0.654 0.818 0.670 2e-64
Q962U0204 60S ribosomal protein L13 N/A N/A 0.647 0.808 0.672 3e-64
Q4R8Z2203 60S ribosomal protein L13 N/A N/A 0.619 0.778 0.639 2e-57
P40429203 60S ribosomal protein L13 yes N/A 0.619 0.778 0.639 2e-57
Q3SZ90203 60S ribosomal protein L13 yes N/A 0.619 0.778 0.639 2e-57
Q5RA38203 60S ribosomal protein L13 yes N/A 0.619 0.778 0.632 6e-57
Q9VNE9205 60S ribosomal protein L13 yes N/A 0.615 0.765 0.630 8e-57
P19253203 60S ribosomal protein L13 yes N/A 0.619 0.778 0.639 9e-57
P35427203 60S ribosomal protein L13 yes N/A 0.619 0.778 0.632 4e-56
Q9XSU0203 60S ribosomal protein L13 yes N/A 0.619 0.778 0.626 7e-56
>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1 Back     alignment and function desciption
 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 137/167 (82%)

Query: 82  FWKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKR 141
           F    I+IDGRGHLLGRLA+++AK +L GN+VVVVR E LNISGNFFRNKLK+++FL KR
Sbjct: 4   FSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKR 63

Query: 142 CNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVP 201
           CNVNPARGPFH+RAP++I WKTVRGM PHK +RG  AL+RL+ Y+G PP Y  R+R+ VP
Sbjct: 64  CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVP 123

Query: 202 TALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKSIEKI 248
            ALR  CLKPGR YC VGR+SHEVGWKY+ +VR LE KR+ K++ K+
Sbjct: 124 AALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKV 170

Choristoneura parallela (taxid: 106495)
>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1 Back     alignment and function description
>sp|Q4R8Z2|RL13A_MACFA 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3 Back     alignment and function description
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2 Back     alignment and function description
>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3 Back     alignment and function description
>sp|Q5RA38|RL13A_PONAB 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3 Back     alignment and function description
>sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1 Back     alignment and function description
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4 Back     alignment and function description
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2 Back     alignment and function description
>sp|Q9XSU0|RL13A_CANFA 60S ribosomal protein L13a OS=Canis familiaris GN=RPL13A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
110456514157 putative 60S ribosomal protein L13A [Dia 0.596 0.968 0.986 1e-80
350413093204 PREDICTED: 60S ribosomal protein L13a-li 0.658 0.823 0.726 9e-68
156544548204 PREDICTED: 60S ribosomal protein L13a-li 0.658 0.823 0.726 1e-67
66500885204 PREDICTED: 60S ribosomal protein L13a is 0.658 0.823 0.720 2e-67
340709161204 PREDICTED: 60S ribosomal protein L13a-li 0.658 0.823 0.708 3e-67
91082991204 PREDICTED: similar to ribosomal protein 0.658 0.823 0.708 3e-67
264667421204 ribosomal protein L13A [Chrysomela tremu 0.658 0.823 0.714 7e-67
307207585197 60S ribosomal protein L13a [Harpegnathos 0.643 0.832 0.737 1e-66
383862429204 PREDICTED: 60S ribosomal protein L13a-li 0.658 0.823 0.708 1e-66
62083489204 ribosomal protein L13a [Lysiphlebus test 0.658 0.823 0.708 6e-66
>gi|110456514|gb|ABG74718.1| putative 60S ribosomal protein L13A [Diaphorina citri] Back     alignment and taxonomy information
 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/152 (98%), Positives = 151/152 (99%)

Query: 84  KTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCN 143
           + PILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCN
Sbjct: 6   RKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCN 65

Query: 144 VNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTA 203
           VNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTA
Sbjct: 66  VNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTA 125

Query: 204 LRTVCLKPGRSYCSVGRISHEVGWKYKTIVRH 235
           LRTVCLKPGRSYCSVGRISHEVGWKYKTIVRH
Sbjct: 126 LRTVCLKPGRSYCSVGRISHEVGWKYKTIVRH 157

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350413093|ref|XP_003489877.1| PREDICTED: 60S ribosomal protein L13a-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|156544548|ref|XP_001607858.1| PREDICTED: 60S ribosomal protein L13a-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66500885|ref|XP_623813.1| PREDICTED: 60S ribosomal protein L13a isoform 2 [Apis mellifera] gi|380022152|ref|XP_003694917.1| PREDICTED: 60S ribosomal protein L13a-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|340709161|ref|XP_003393181.1| PREDICTED: 60S ribosomal protein L13a-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|91082991|ref|XP_974304.1| PREDICTED: similar to ribosomal protein L13a [Tribolium castaneum] gi|270007030|gb|EFA03478.1| hypothetical protein TcasGA2_TC013477 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|264667421|gb|ACY71296.1| ribosomal protein L13A [Chrysomela tremula] Back     alignment and taxonomy information
>gi|307207585|gb|EFN85250.1| 60S ribosomal protein L13a [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383862429|ref|XP_003706686.1| PREDICTED: 60S ribosomal protein L13a-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|62083489|gb|AAX62469.1| ribosomal protein L13a [Lysiphlebus testaceipes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
UNIPROTKB|Q3SZ90203 RPL13A "60S ribosomal protein 0.588 0.738 0.64 9.2e-52
UNIPROTKB|F1PI16203 RPL13A "60S ribosomal protein 0.588 0.738 0.64 1.5e-51
UNIPROTKB|P40429203 RPL13A "60S ribosomal protein 0.588 0.738 0.64 1.5e-51
UNIPROTKB|F1RI01204 RPL13A "60S ribosomal protein 0.588 0.735 0.64 1.5e-51
UNIPROTKB|Q4R8Z2203 RPL13A "60S ribosomal protein 0.588 0.738 0.64 1.5e-51
FB|FBgn0037351205 RpL13A "Ribosomal protein L13A 0.588 0.731 0.626 1.9e-51
MGI|MGI:1351455203 Rpl13a "ribosomal protein L13A 0.588 0.738 0.64 2.4e-51
UNIPROTKB|Q5RK10203 Rpl13a "Neuroprotective protei 0.588 0.738 0.64 2.4e-51
UNIPROTKB|Q5RA38203 RPL13A "60S ribosomal protein 0.588 0.738 0.633 5.1e-51
ZFIN|ZDB-GENE-030131-168205 rpl13a "ribosomal protein L13a 0.588 0.731 0.64 5.1e-51
UNIPROTKB|Q3SZ90 RPL13A "60S ribosomal protein L13a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 96/150 (64%), Positives = 123/150 (82%)

Query:    87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
             +++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKLKYLAFL KR N NP
Sbjct:     7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66

Query:   147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
             +RGP+H+RAP+RIFW+TVRGM PHK  RG  AL+RLKV++GIPP Y +++R+ VP AL+ 
Sbjct:    67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKV 126

Query:   207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
             V LKP R +  +GR++HEVGWKY+ +   L
Sbjct:   127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATL 156
GO:1901194 "negative regulation of formation of translation preinitiation complex" evidence=ISS
GO:0017148 "negative regulation of translation" evidence=ISS
GO:0015934 "large ribosomal subunit" evidence=IEA
GO:0006412 "translation" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA
UNIPROTKB|F1PI16 RPL13A "60S ribosomal protein L13a" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P40429 RPL13A "60S ribosomal protein L13a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RI01 RPL13A "60S ribosomal protein L13a" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R8Z2 RPL13A "60S ribosomal protein L13a" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
FB|FBgn0037351 RpL13A "Ribosomal protein L13A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1351455 Rpl13a "ribosomal protein L13A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RK10 Rpl13a "Neuroprotective protein 11" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RA38 RPL13A "60S ribosomal protein L13a" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-168 rpl13a "ribosomal protein L13a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P26784RL16A_YEASTNo assigned EC number0.60620.62740.8040yesN/A
O42991RL16B_SCHPONo assigned EC number0.61720.63520.8223yesN/A
P35427RL13A_RATNo assigned EC number0.63290.61960.7783yesN/A
Q9SVR0R13A3_ARATHNo assigned EC number0.54430.61960.7669yesN/A
Q3SZ90RL13A_BOVINNo assigned EC number0.63920.61960.7783yesN/A
P19253RL13A_MOUSENo assigned EC number0.63920.61960.7783yesN/A
O42848RL16A_SCHPONo assigned EC number0.61720.63520.8223yesN/A
Q27389RL13A_CAEELNo assigned EC number0.61780.61170.7722yesN/A
P40429RL13A_HUMANNo assigned EC number0.63920.61960.7783yesN/A
Q9VNE9RL13A_DROMENo assigned EC number0.63050.61560.7658yesN/A
Q553M7RL13A_DICDINo assigned EC number0.54260.64310.8770yesN/A
Q5RA38RL13A_PONABNo assigned EC number0.63290.61960.7783yesN/A
Q9XSU0RL13A_CANFANo assigned EC number0.62650.61960.7783yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
PTZ00068202 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Pr 3e-81
TIGR01077142 TIGR01077, L13_A_E, ribosomal protein L13, archaea 9e-58
PTZ00068202 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Pr 2e-38
cd00392114 cd00392, Ribosomal_L13, Ribosomal protein L13 2e-35
COG0102148 COG0102, RplM, Ribosomal protein L13 [Translation, 5e-32
pfam00572128 pfam00572, Ribosomal_L13, Ribosomal protein L13 2e-30
PRK06394146 PRK06394, rpl13p, 50S ribosomal protein L13P; Revi 3e-30
TIGR01077142 TIGR01077, L13_A_E, ribosomal protein L13, archaea 8e-30
cd00392114 cd00392, Ribosomal_L13, Ribosomal protein L13 2e-23
COG0102148 COG0102, RplM, Ribosomal protein L13 [Translation, 7e-18
pfam00572128 pfam00572, Ribosomal_L13, Ribosomal protein L13 4e-16
PRK06394146 PRK06394, rpl13p, 50S ribosomal protein L13P; Revi 6e-13
PRK09216144 PRK09216, rplM, 50S ribosomal protein L13; Reviewe 9e-09
CHL00159143 CHL00159, rpl13, ribosomal protein L13; Validated 2e-08
TIGR01066140 TIGR01066, rplM_bact, ribosomal protein L13, bacte 2e-04
PRK09216144 PRK09216, rplM, 50S ribosomal protein L13; Reviewe 8e-04
CHL00159143 CHL00159, rpl13, ribosomal protein L13; Validated 0.002
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional Back     alignment and domain information 
 Score =  242 bits (619), Expect = 3e-81
 Identities = 96/158 (60%), Positives = 121/158 (76%)

Query: 87  ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
           I+ID +GHLLGRLAS+VAK +L G ++VVVR E LNISG+ FRNK+KY  FL KR N NP
Sbjct: 6   IVIDCKGHLLGRLASVVAKELLLGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNP 65

Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
            RGPFH+RAP+ IFW+TVRGM PHK  RGA ALKRLKV+EG+P  Y + +R+ +P+ALR 
Sbjct: 66  RRGPFHHRAPSDIFWRTVRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPSALRV 125

Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREKS 244
           + LKP R Y  +G +S  VGWKY  +V  LE KR+E++
Sbjct: 126 LRLKPERPYTVLGDLSAHVGWKYADVVAKLEEKRKERA 163

Length = 202
>gnl|CDD|162192 TIGR01077, L13_A_E, ribosomal protein L13, archaeal/eukaryotic Back     alignment and domain information
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional Back     alignment and domain information
>gnl|CDD|238230 cd00392, Ribosomal_L13, Ribosomal protein L13 Back     alignment and domain information
>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201314 pfam00572, Ribosomal_L13, Ribosomal protein L13 Back     alignment and domain information
>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed Back     alignment and domain information
>gnl|CDD|162192 TIGR01077, L13_A_E, ribosomal protein L13, archaeal/eukaryotic Back     alignment and domain information
>gnl|CDD|238230 cd00392, Ribosomal_L13, Ribosomal protein L13 Back     alignment and domain information
>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201314 pfam00572, Ribosomal_L13, Ribosomal protein L13 Back     alignment and domain information
>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed Back     alignment and domain information
>gnl|CDD|181703 PRK09216, rplM, 50S ribosomal protein L13; Reviewed Back     alignment and domain information
>gnl|CDD|177072 CHL00159, rpl13, ribosomal protein L13; Validated Back     alignment and domain information
>gnl|CDD|162186 TIGR01066, rplM_bact, ribosomal protein L13, bacterial type Back     alignment and domain information
>gnl|CDD|181703 PRK09216, rplM, 50S ribosomal protein L13; Reviewed Back     alignment and domain information
>gnl|CDD|177072 CHL00159, rpl13, ribosomal protein L13; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
PTZ00068202 60S ribosomal protein L13a; Provisional 100.0
TIGR01077142 L13_A_E ribosomal protein L13, archaeal/eukaryotic 100.0
PRK06394146 rpl13p 50S ribosomal protein L13P; Reviewed 100.0
KOG3204|consensus197 100.0
CHL00159143 rpl13 ribosomal protein L13; Validated 100.0
PRK09216144 rplM 50S ribosomal protein L13; Reviewed 100.0
COG0102148 RplM Ribosomal protein L13 [Translation, ribosomal 100.0
TIGR01066140 rplM_bact ribosomal protein L13, bacterial type. T 100.0
PF00572128 Ribosomal_L13: Ribosomal protein L13; InterPro: IP 100.0
PLN00205191 ribisomal protein L13 family protein; Provisional 100.0
cd00392114 Ribosomal_L13 Ribosomal protein L13. Protein L13, 100.0
KOG3203|consensus165 100.0
PTZ00068202 60S ribosomal protein L13a; Provisional 99.94
COG0102148 RplM Ribosomal protein L13 [Translation, ribosomal 99.9
cd00392114 Ribosomal_L13 Ribosomal protein L13. Protein L13, 99.87
TIGR01077142 L13_A_E ribosomal protein L13, archaeal/eukaryotic 99.86
TIGR01066140 rplM_bact ribosomal protein L13, bacterial type. T 99.85
PRK09216144 rplM 50S ribosomal protein L13; Reviewed 99.85
PRK06394146 rpl13p 50S ribosomal protein L13P; Reviewed 99.84
PF00572128 Ribosomal_L13: Ribosomal protein L13; InterPro: IP 99.82
CHL00159143 rpl13 ribosomal protein L13; Validated 99.8
PLN00205191 ribisomal protein L13 family protein; Provisional 99.79
KOG3204|consensus197 99.67
KOG3203|consensus165 99.62
>PTZ00068 60S ribosomal protein L13a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-63  Score=436.83  Aligned_cols=169  Identities=58%  Similarity=0.989  Sum_probs=164.9

Q ss_pred             ceeEEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhHHHH
Q psy9430          84 KTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKT  163 (255)
Q Consensus        84 r~w~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il~ra  163 (255)
                      .+|+||||+||+||||||.||+.|+|||+|||||||+|.|||++++++.+|.++++.++++||..|++|+|+|++||++|
T Consensus         3 ~~w~vIDA~g~vLGRLAS~VAk~Ll~Gd~VVVVNaeki~iTG~k~~~K~~y~~~lk~~~~~nP~~g~~~~r~P~~Il~ra   82 (202)
T PTZ00068          3 KKVIVIDCKGHLLGRLASVVAKELLLGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNPRRGPFHHRAPSDIFWRT   82 (202)
T ss_pred             CceEEEECCCCcHHHHHHHHHHHHhCCCEEEEEecceeEeecchhhheeeeEeeeEeeccCCCCcchhcccCHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCchHHHHHHHHHHHHHH
Q psy9430         164 VRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHLERKRREK  243 (255)
Q Consensus       164 VrGMLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~~~~~~~le~~r~~~  243 (255)
                      |+||||+||++|+++|+||+||+|+||||++++++++|+|+++.+|+|.++||||||||++|||+|+++|++||++|+++
T Consensus        83 VrGMLPkk~~~Gr~alkrLkVy~G~php~~~~k~~vvp~A~r~~rl~~~~ky~~lg~ls~~vGwky~~vv~~le~krk~k  162 (202)
T PTZ00068         83 VRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPSALRVLRLKPERPYTVLGDLSAHVGWKYADVVAKLEEKRKER  162 (202)
T ss_pred             HhhhCCCCChhHHHHHhCCEEecCCCCchhccCcccccchhhhhccCCCCceeeHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            99999998999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy9430         244 SIEKIKLHT  252 (255)
Q Consensus       244 ~~~~~~~~~  252 (255)
                      ++.||+++.
T Consensus       163 ~~~~~~~k~  171 (202)
T PTZ00068        163 AAAYYKKKV  171 (202)
T ss_pred             HHHHHHHHH
Confidence            999998764

>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic Back     alignment and domain information
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed Back     alignment and domain information
>KOG3204|consensus Back     alignment and domain information
>CHL00159 rpl13 ribosomal protein L13; Validated Back     alignment and domain information
>PRK09216 rplM 50S ribosomal protein L13; Reviewed Back     alignment and domain information
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type Back     alignment and domain information
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PLN00205 ribisomal protein L13 family protein; Provisional Back     alignment and domain information
>cd00392 Ribosomal_L13 Ribosomal protein L13 Back     alignment and domain information
>KOG3203|consensus Back     alignment and domain information
>PTZ00068 60S ribosomal protein L13a; Provisional Back     alignment and domain information
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00392 Ribosomal_L13 Ribosomal protein L13 Back     alignment and domain information
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic Back     alignment and domain information
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type Back     alignment and domain information
>PRK09216 rplM 50S ribosomal protein L13; Reviewed Back     alignment and domain information
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed Back     alignment and domain information
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00159 rpl13 ribosomal protein L13; Validated Back     alignment and domain information
>PLN00205 ribisomal protein L13 family protein; Provisional Back     alignment and domain information
>KOG3204|consensus Back     alignment and domain information
>KOG3203|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
2zkr_j203 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-53
3izs_K199 Localization Of The Large Subunit Ribosomal Protein 2e-52
3jyw_M178 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-49
1s1i_M146 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 4e-49
3izr_K206 Localization Of The Large Subunit Ribosomal Protein 4e-48
4a17_I198 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-42
4b6a_O217 Cryo-Em Structure Of The 60s Ribosomal Subunit In C 6e-41
3u5i_O217 The Structure Of The Eukaryotic Ribosome At 3.0 A R 2e-40
3zf7_O222 High-resolution Cryo-electron Microscopy Structure 6e-32
3j21_I142 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-20
1j3a_A142 Crystal Structure Of Ribosomal Protein L13 From Pyr 2e-20
1ffk_G145 Crystal Structure Of The Large Ribosomal Subunit Fr 7e-14
3g4s_J142 Co-Crystal Structure Of Tiamulin Bound To The Large 8e-14
>pdb|2ZKR|JJ Chain j, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 203 Back     alignment and structure 
Iteration: 1

 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 120/150 (80%)
Query: 87  ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
           +++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKL YLAFL KR N NP
Sbjct: 7   LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
           +RGP+ +RAP+RIFW+TVRGM PHK  RG  AL RLKV++GIPP Y +++R+ VP AL+ 
Sbjct: 67  SRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
           V LKP R +  +GR++HEVGWKY+ +   L
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATL 156
>pdb|3IZS|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 199 Back     alignment and structure
>pdb|3JYW|M Chain M, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 178 Back     alignment and structure
>pdb|1S1I|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 146 Back     alignment and structure
>pdb|3IZR|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 206 Back     alignment and structure
>pdb|4A17|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 198 Back     alignment and structure
>pdb|3ZF7|O Chain O, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 222 Back     alignment and structure
>pdb|3J21|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 142 Back     alignment and structure
>pdb|1J3A|A Chain A, Crystal Structure Of Ribosomal Protein L13 From Pyrococcus Horikoshii Length = 142 Back     alignment and structure
>pdb|1FFK|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 145 Back     alignment and structure
>pdb|3G4S|J Chain J, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 142 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
1j3a_A142 50S ribosomal protein L13P; rRNA binding, ribosoma 1e-65
1j3a_A142 50S ribosomal protein L13P; rRNA binding, ribosoma 2e-33
3jyw_M178 60S ribosomal protein L16(A); eukaryotic ribosome, 5e-65
3jyw_M178 60S ribosomal protein L16(A); eukaryotic ribosome, 6e-29
4a17_I198 RPL13A, 60S ribosomal protein L13A; eukaryotic rib 6e-60
4a17_I198 RPL13A, 60S ribosomal protein L13A; eukaryotic rib 1e-27
3izc_K199 60S ribosomal protein RPL16 (L13P); eukaryotic rib 9e-60
3izc_K199 60S ribosomal protein RPL16 (L13P); eukaryotic rib 8e-28
1vq8_J145 50S ribosomal protein L13P; ribosome 50S, protein- 7e-59
1vq8_J145 50S ribosomal protein L13P; ribosome 50S, protein- 1e-31
3iz5_K206 60S ribosomal protein L13A (L13P); eukaryotic ribo 1e-56
3iz5_K206 60S ribosomal protein L13A (L13P); eukaryotic ribo 6e-28
2zkr_j203 60S ribosomal protein L13A; protein-RNA complex, 6 4e-54
2zkr_j203 60S ribosomal protein L13A; protein-RNA complex, 6 3e-25
3r8s_J142 50S ribosomal protein L13; protein biosynthesis, R 4e-10
3r8s_J142 50S ribosomal protein L13; protein biosynthesis, R 1e-04
3v2d_N140 50S ribosomal protein L13; ribosome associated inh 4e-10
3v2d_N140 50S ribosomal protein L13; ribosome associated inh 9e-05
2ftc_H148 L13MT, MRP-L13, 39S ribosomal protein L13, mitocho 6e-10
2ftc_H148 L13MT, MRP-L13, 39S ribosomal protein L13, mitocho 2e-04
3f1f_N163 50S ribosomal protein L13; RF2, ribosome, terminat 1e-09
3f1f_N163 50S ribosomal protein L13; RF2, ribosome, terminat 2e-04
2zjr_G174 50S ribosomal protein L13; ribosome, large ribosom 2e-09
2zjr_G174 50S ribosomal protein L13; ribosome, large ribosom 3e-04
3bbo_L250 Ribosomal protein L13; large ribosomal subunit, sp 5e-09
3bbo_L250 Ribosomal protein L13; large ribosomal subunit, sp 4e-04
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Length = 142 Back     alignment and structure
 Score =  199 bits (508), Expect = 1e-65
 Identities = 57/143 (39%), Positives = 78/143 (54%), Gaps = 2/143 (1%)

Query: 87  ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
            +I+  G +LGRLAS VAK +L G  VV+V AE   I+GN      KY      R   NP
Sbjct: 2   RIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNP 61

Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
            RGPF+ +    I  +T+RGM P K DRG KA +RLKVY GIP ++  +Q   +  A  +
Sbjct: 62  RRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVS 121

Query: 207 VCLKPGRSYCSVGRISHEVGWKY 229
                   Y +VG ++  +G K+
Sbjct: 122 --RLSRPKYVTVGEVAKFLGGKF 142
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Length = 142 Back     alignment and structure
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M Length = 178 Back     alignment and structure
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M Length = 178 Back     alignment and structure
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Length = 198 Back     alignment and structure
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Length = 198 Back     alignment and structure
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Length = 145 Back     alignment and structure
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Length = 145 Back     alignment and structure
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 203 Back     alignment and structure
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 203 Back     alignment and structure
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Length = 142 Back     alignment and structure
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Length = 142 Back     alignment and structure
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Length = 140 Back     alignment and structure
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Length = 140 Back     alignment and structure
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 148 Back     alignment and structure
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 148 Back     alignment and structure
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Length = 163 Back     alignment and structure
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Length = 163 Back     alignment and structure
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Length = 174 Back     alignment and structure
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Length = 174 Back     alignment and structure
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 250 Back     alignment and structure
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 250 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
3iz5_K206 60S ribosomal protein L13A (L13P); eukaryotic ribo 100.0
4a17_I198 RPL13A, 60S ribosomal protein L13A; eukaryotic rib 100.0
4b6a_O199 60S ribosomal protein L16-A; large ribosomal subun 100.0
2zkr_j203 60S ribosomal protein L13A; protein-RNA complex, 6 100.0
3jyw_M178 60S ribosomal protein L16(A); eukaryotic ribosome, 100.0
1j3a_A142 50S ribosomal protein L13P; rRNA binding, ribosoma 100.0
1vq8_J145 50S ribosomal protein L13P; ribosome 50S, protein- 100.0
3r8s_J142 50S ribosomal protein L13; protein biosynthesis, R 100.0
3v2d_N140 50S ribosomal protein L13; ribosome associated inh 100.0
2ftc_H148 L13MT, MRP-L13, 39S ribosomal protein L13, mitocho 100.0
3f1f_N163 50S ribosomal protein L13; RF2, ribosome, terminat 100.0
2zjr_G174 50S ribosomal protein L13; ribosome, large ribosom 100.0
3bbo_L250 Ribosomal protein L13; large ribosomal subunit, sp 100.0
3iz5_K206 60S ribosomal protein L13A (L13P); eukaryotic ribo 99.94
4a17_I198 RPL13A, 60S ribosomal protein L13A; eukaryotic rib 99.93
2zkr_j203 60S ribosomal protein L13A; protein-RNA complex, 6 99.92
1j3a_A142 50S ribosomal protein L13P; rRNA binding, ribosoma 99.92
4b6a_O199 60S ribosomal protein L16-A; large ribosomal subun 99.91
1vq8_J145 50S ribosomal protein L13P; ribosome 50S, protein- 99.9
3jyw_M178 60S ribosomal protein L16(A); eukaryotic ribosome, 99.89
2ftc_H148 L13MT, MRP-L13, 39S ribosomal protein L13, mitocho 99.88
3r8s_J142 50S ribosomal protein L13; protein biosynthesis, R 99.87
2zjr_G174 50S ribosomal protein L13; ribosome, large ribosom 99.85
3f1f_N163 50S ribosomal protein L13; RF2, ribosome, terminat 99.84
3v2d_N140 50S ribosomal protein L13; ribosome associated inh 99.84
3bbo_L250 Ribosomal protein L13; large ribosomal subunit, sp 99.82
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Back     alignment and structure
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Back     alignment and structure
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Back     alignment and structure
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Back     alignment and structure
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Back     alignment and structure
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Back     alignment and structure
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Back     alignment and structure
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Back     alignment and structure
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Back     alignment and structure
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Back     alignment and structure
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Back     alignment and structure
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Back     alignment and structure
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Back     alignment and structure
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Back     alignment and structure
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Back     alignment and structure
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Back     alignment and structure
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d1j3aa_142 c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyro 3e-41
d1j3aa_142 c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyro 1e-16
d1vqoj1142 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon 2e-38
d1vqoj1142 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon 8e-19
d2j01n1139 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus 9e-22
d2j01n1139 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus 6e-11
d2gych1140 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escheric 1e-21
d2gych1140 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escheric 7e-11
d2zjrg1142 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinoco 4e-20
d2zjrg1142 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinoco 4e-09
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 142 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  136 bits (343), Expect = 3e-41
 Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 2/142 (1%)

Query: 88  LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
           +I+  G +LGRLAS VAK +L G  VV+V AE   I+GN      KY      R   NP 
Sbjct: 3   IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62

Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
           RGPF+ +    I  +T+RGM P K DRG KA +RLKVY GIP ++  +Q   +  A  + 
Sbjct: 63  RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSR 122

Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
             +P   Y +VG ++  +G K+
Sbjct: 123 LSRP--KYVTVGEVAKFLGGKF 142
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 142 Back     information, alignment and structure
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 Back     information, alignment and structure
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 Back     information, alignment and structure
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Length = 139 Back     information, alignment and structure
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Length = 139 Back     information, alignment and structure
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Length = 140 Back     information, alignment and structure
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Length = 140 Back     information, alignment and structure
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Length = 142 Back     information, alignment and structure
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d1j3aa_142 Ribosomal protein L13 {Archaeon Pyrococcus horikos 100.0
d1vqoj1142 Ribosomal protein L13 {Archaeon Haloarcula marismo 100.0
d2j01n1139 Ribosomal protein L13 {Thermus thermophilus [TaxId 100.0
d2gych1140 Ribosomal protein L13 {Escherichia coli [TaxId: 56 100.0
d2zjrg1142 Ribosomal protein L13 {Deinococcus radiodurans [Ta 100.0
d1vqoj1142 Ribosomal protein L13 {Archaeon Haloarcula marismo 99.87
d1j3aa_142 Ribosomal protein L13 {Archaeon Pyrococcus horikos 99.84
d2j01n1139 Ribosomal protein L13 {Thermus thermophilus [TaxId 99.82
d2gych1140 Ribosomal protein L13 {Escherichia coli [TaxId: 56 99.81
d2zjrg1142 Ribosomal protein L13 {Deinococcus radiodurans [Ta 99.8
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.5e-50  Score=335.25  Aligned_cols=141  Identities=41%  Similarity=0.588  Sum_probs=119.0

Q ss_pred             EEEcCCCCcchhhHHHHHHHHhCCCEEEEEeecceeecCccccchhhhhhhcceeecCCCCCccccccCchHhHHHHHhc
Q psy9430          87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRG  166 (255)
Q Consensus        87 ~vIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNaeki~itG~k~~~k~~Y~~~lk~~~~~np~~g~~~~r~P~~Il~raVrG  166 (255)
                      -||||+|++||||||.||+.|++||+|||||||+|.+||+|+.++.+|.+....++..+|+++++++++|++||++||+|
T Consensus         2 ~vIDA~g~~lGRLAs~vAk~L~~Gd~ViVvNaeki~~tG~K~~~k~~~~~~~~~g~~~~~~~~~~~~~~P~~il~~aVrG   81 (142)
T d1j3aa_           2 RIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRG   81 (142)
T ss_dssp             EEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCCSHHHHHHHHHHT
T ss_pred             EEEeCCCCchHHHHHHHHHHHhCCCeEEEEechhheecCcchhhhhhhhhhcccccccCcchhhhcccChHHHHHHHHHc
Confidence            48999999999999999999999999999999999999999999986655544556777789999999999999999999


Q ss_pred             cCCCCChhHHHhhccCeeecCCCCchhhcccccccccccccccCCCCCeeehhhhhhhhCCch
Q psy9430         167 MTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTVCLKPGRSYCSVGRISHEVGWKY  229 (255)
Q Consensus       167 MLPkkn~~gr~~l~rLkvy~G~~hp~~~qk~~~~p~al~~~~l~~~~k~~~lgel~~~~Gwk~  229 (255)
                      |||+||++|+++|+||+||+|+||||++|+|+.+|+|. ..++. ..+||+|||||++|||||
T Consensus        82 MLP~k~~lgr~~~krLkvy~G~~h~~~~q~~~~~~~a~-~~~~~-~~k~~~lgels~~~Gwk~  142 (142)
T d1j3aa_          82 MLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAH-VSRLS-RPKYVTVGEVAKFLGGKF  142 (142)
T ss_dssp             TTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGB-GGGSS-SCCEEEHHHHHHHHTCCC
T ss_pred             ccCCCChHHHHHHhCCEEecCCCCChhhcCCccccHHH-Hhhhc-CCceEEHHHHHHHhCcCC
Confidence            99977999999999999999999999999999999985 55554 348999999999999997
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure