Psyllid ID: psy9441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR
ccccccEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccccccccHHHHHcccccccHHHHHHHcccccEEEEEcccHHcHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEccEEEEEHHHHHHHHHHHHHHHHcccccccHHEEEEEEEcccccccccccEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccccccccccEEccccccEEEEEEccccccHHHHHHHHHHHccccccEEccccEEEEEEccccHHHHHHHHcccccEEEEEEcc
ccHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccHcccccHHHHHHHHHcccHHHHHHHHcccccEEEEEcccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHccccccHHHHccccccccccccccccccEcccccccccccccccccccccccEEEEEEcccccccHHccccEccEEEccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccccccEEEEEEEEccccccccEEEEEcccEEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccccccccccccEEEEEcHHHHHHHHHHccccccEEEEEEEc
mlspqgmckafdvAGHAFHSKYIAEAGPKLrssldriipapkprsarwisssipedhwgtplaqqsspayhvnnllSPVLFYEALqhvpenavvIEIAPHALLQAIIKRakpgavsigltkrgapdlpahLLSGLGklynaglqprlnqllppvkfpvgrgtpmIQSLVEWDHSTEWSVASfagkggsrsgecvidvdlskeedaylsghaidgrilfpatgTEEAVEHFLQKIESIPRDDEFIALLHEIHNtniaghpyrgytvlsdnsathELAVSEFelcesgsvavsgrirtpedvskeqldlpeltpaISSEMLElssadvykdlrlrgydysgafrgvsqsdnkgftgkldwtgnWISYIDTMLQFSILGintrelylptrmqrvcidpAKHKALVETlsgdkktvpvamyr
MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASfagkggsrsgECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELcesgsvavsgrirtpedvskeqldlpelTPAISSEMLELSSADVYKDLRLRGYDYSgafrgvsqsdnkgftgkLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKAlvetlsgdkktvpvamyr
MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR
*******CKAFDVAGHAFHSKYIAEA*******************************W*********PAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSV**************VIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVA*********************************SADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVE***************
MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRI**********W***SIP*********QQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEW*****************IDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRT**********************LELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKA**********TVPVAMYR
MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASF********GECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR
MLS*QGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR
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MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query418 2.2.26 [Sep-21-2011]
P12785 2505 Fatty acid synthase OS=Ra yes N/A 0.964 0.160 0.437 4e-84
P49327 2511 Fatty acid synthase OS=Ho yes N/A 0.956 0.159 0.430 5e-83
P19096 2504 Fatty acid synthase OS=Mu yes N/A 0.954 0.159 0.421 9e-80
P12276 2512 Fatty acid synthase OS=Ga yes N/A 0.947 0.157 0.406 2e-76
Q71SP7 2513 Fatty acid synthase OS=Bo yes N/A 0.959 0.159 0.401 6e-72
>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3 Back     alignment and function desciption
 Score =  311 bits (798), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/418 (43%), Positives = 242/418 (57%), Gaps = 15/418 (3%)

Query: 9    KAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSP 68
            K     G AFHS ++    P L  +L ++I  P+PRSARW+S+SIPE  W + LA+ SS 
Sbjct: 673  KEVRTGGLAFHSYFMEGIAPTLLQALKKVIREPRPRSARWLSTSIPEAQWQSSLARTSSA 732

Query: 69   AYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGAPDL 127
             Y+VNNL+SPVLF EAL HVPE+AVV+EIAPHALLQA++KR  KP    I L KR   D 
Sbjct: 733  EYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGVKPSCTIIPLMKRDHKDN 792

Query: 128  PAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWS--VASFAGK 185
                L+ LGK++  G+    N L PPV+FPV RGTP+I   ++WDHS  W   VA     
Sbjct: 793  LEFFLTNLGKVHLTGIDINPNALFPPVEFPVPRGTPLISPHIKWDHSQTWDIPVAEDFPN 852

Query: 186  GGSRSGECVIDVDLSKE-EDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEFI 244
            G S S   V ++D S E  D YL  H IDGR+LFP TG    V   L +  S+  ++  +
Sbjct: 853  GSSSSSATVYNIDASSESSDHYLVDHCIDGRVLFPGTGYLYLVWKTLARSLSLSLEETPV 912

Query: 245  ALLH-EIHNTNIAGHPYRGYTVLSDN--SATHELAVSEFELCESGSVAVSGRIRTPEDVS 301
               +   H   I   P  G   L      A+H      FE+ +SG++ VSG++   ED  
Sbjct: 913  VFENVTFHQATIL--PRTGTVPLEVRLLEASH-----AFEVSDSGNLIVSGKVYQWEDPD 965

Query: 302  KEQLDLPEL-TPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTG 360
             +  D PE+  PA S  +  L+  +VYK+LRLRGYDY   F+GV ++  +G  GKL W  
Sbjct: 966  SKLFDHPEVPIPAESESVSRLTQGEVYKELRLRGYDYGPHFQGVYEATLEGEQGKLLWKD 1025

Query: 361  NWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR 418
            NW++++DTMLQ SILG + + L LPTR+  + IDPA H   V  L GD +   V   R
Sbjct: 1026 NWVTFMDTMLQISILGFSKQSLQLPTRVTAIYIDPATHLQKVYMLEGDTQVADVTTSR 1083
Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 4
>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3 Back     alignment and function description
>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2 Back     alignment and function description
>sp|P12276|FAS_CHICK Fatty acid synthase OS=Gallus gallus GN=FASN PE=1 SV=5 Back     alignment and function description
>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
328705166 2395 PREDICTED: fatty acid synthase-like isof 0.966 0.168 0.597 1e-133
328705164 2389 PREDICTED: fatty acid synthase-like isof 0.966 0.169 0.597 1e-133
270014917 2383 hypothetical protein TcasGA2_TC011522 [T 0.959 0.168 0.592 1e-132
189233593 3189 PREDICTED: similar to fatty acid synthas 0.959 0.125 0.592 1e-132
345479258 2398 PREDICTED: fatty acid synthase-like isof 0.944 0.164 0.565 1e-128
345479260 2408 PREDICTED: fatty acid synthase-like isof 0.944 0.164 0.565 1e-128
242023225 2381 fatty acid synthase, putative [Pediculus 0.954 0.167 0.551 1e-126
328705168 2113 PREDICTED: fatty acid synthase-like [Acy 0.961 0.190 0.548 1e-124
195470975 2540 GE18210 [Drosophila yakuba] gi|194173882 0.956 0.157 0.524 1e-117
19920632 2438 CG3523, isoform A [Drosophila melanogast 0.956 0.164 0.517 1e-117
>gi|328705166|ref|XP_001945190.2| PREDICTED: fatty acid synthase-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/415 (59%), Positives = 294/415 (70%), Gaps = 11/415 (2%)

Query: 7    MCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQS 66
              K    +G+AFHSKYIA+A PKLR+SL+RI+P PKPR++RWISSSIPE  W TPLAQ S
Sbjct: 700  FAKEVKSSGYAFHSKYIADAAPKLRNSLERILPNPKPRTSRWISSSIPEALWNTPLAQMS 759

Query: 67   SPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGA- 124
            S AYHVNNLL+PVLF+EAL HVP++AVVIEIAPHALLQAI+KRA  P    IGLTKR   
Sbjct: 760  STAYHVNNLLAPVLFHEALAHVPKDAVVIEIAPHALLQAILKRALGPECSCIGLTKRSTN 819

Query: 125  PDLP-AHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFA 183
            P+   + LLS +GKLYNAG+QP++  L P V +PV +GTPMIQSL+EWDHS EW V+ F 
Sbjct: 820  PEGNISVLLSAIGKLYNAGVQPKIKNLYPAVSYPVAKGTPMIQSLIEWDHSVEWFVSDFV 879

Query: 184  GKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEF 243
             K    SGE VI VDLS EED YLSGHAIDGR+LFPATG    V     K++    +D F
Sbjct: 880  QKEAG-SGESVIKVDLSTEEDQYLSGHAIDGRVLFPATGYLTLVWRTFAKLQDKNIED-F 937

Query: 244  IALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKE 303
              ++  +        P  G      N          FE+CE GSVAV+GRI  P+D+  E
Sbjct: 938  PVVIENVQFLRATIMPKDGNVNFLINIFE---GTGNFEICEGGSVAVTGRIFVPDDIETE 994

Query: 304  QLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWI 363
            QL+LPE  P +    L L SAD+YKDL LRGYDY G FRGV+++DNKG +GKLDW GNWI
Sbjct: 995  QLELPE--PYVDENNLSLKSADIYKDLGLRGYDYKGVFRGVNEADNKGISGKLDWIGNWI 1052

Query: 364  SYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAMYR 418
            +YIDTMLQFSILG+ T+ELYLPTRMQRV IDPAKH   +ETL  +   VPV MYR
Sbjct: 1053 TYIDTMLQFSILGLKTKELYLPTRMQRVIIDPAKHLEFIETLP-ENSPVPVYMYR 1106

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328705164|ref|XP_003242717.1| PREDICTED: fatty acid synthase-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|270014917|gb|EFA11365.1| hypothetical protein TcasGA2_TC011522 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189233593|ref|XP_970417.2| PREDICTED: similar to fatty acid synthase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345479258|ref|XP_003423914.1| PREDICTED: fatty acid synthase-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345479260|ref|XP_001605059.2| PREDICTED: fatty acid synthase-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242023225|ref|XP_002432036.1| fatty acid synthase, putative [Pediculus humanus corporis] gi|212517394|gb|EEB19298.1| fatty acid synthase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328705168|ref|XP_001945287.2| PREDICTED: fatty acid synthase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195470975|ref|XP_002087781.1| GE18210 [Drosophila yakuba] gi|194173882|gb|EDW87493.1| GE18210 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|19920632|ref|NP_608748.1| CG3523, isoform A [Drosophila melanogaster] gi|7295848|gb|AAF51148.1| CG3523, isoform A [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
FB|FBgn0027571 2544 CG3523 [Drosophila melanogaste 0.961 0.158 0.529 5.7e-110
ZFIN|ZDB-GENE-030131-7802 2514 fasn "fatty acid synthase" [Da 0.952 0.158 0.451 1.9e-85
FB|FBgn0042627 2409 v(2)k05816 "v(2)k05816" [Droso 0.897 0.155 0.443 2.1e-82
RGD|620665 2505 Fasn "fatty acid synthase" [Ra 0.980 0.163 0.434 9.5e-79
UNIPROTKB|P12785 2505 Fasn "Fatty acid synthase" [Ra 0.980 0.163 0.434 9.5e-79
UNIPROTKB|P49327 2511 FASN "Fatty acid synthase" [Ho 0.973 0.162 0.429 3.2e-78
UNIPROTKB|E1BWG0 2446 FASN "Fatty acid synthase" [Ga 0.911 0.155 0.431 2.7e-76
UNIPROTKB|F1N8A8 2512 FASN "Fatty acid synthase" [Ga 0.911 0.151 0.431 3e-76
UNIPROTKB|P12276 2512 FASN "Fatty acid synthase" [Ga 0.911 0.151 0.431 3e-76
UNIPROTKB|E1BW07 2513 FASN "Fatty acid synthase" [Ga 0.911 0.151 0.431 3e-76
FB|FBgn0027571 CG3523 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1071 (382.1 bits), Expect = 5.7e-110, Sum P(2) = 5.7e-110
 Identities = 226/427 (52%), Positives = 296/427 (69%)

Query:     2 LSPQGM-CKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGT 60
             L+ +G+  KA + +G+AFHSKYIAEAGPKLR SL++IIP  K R+ARWIS+SIPE  W T
Sbjct:   809 LNAEGVFAKAVNSSGYAFHSKYIAEAGPKLRKSLEKIIPNAKNRTARWISTSIPESAWNT 868

Query:    61 PLAQQSSPAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAK-PGAVSIGL 119
             P+A+QSS AYHVNNLLSPVLF+EALQHVP+NA+ +EIAPH LLQAI+KRA  P A ++ L
Sbjct:   869 PVAKQSSAAYHVNNLLSPVLFHEALQHVPKNAISVEIAPHGLLQAILKRALGPDATNLSL 928

Query:   120 TKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSV 179
              KRG  +     L+ +GKL+ AG QP++  L+ P+ +PVGRGTPM+ S V WDH+ +W V
Sbjct:   929 VKRGHENNVEFFLTNVGKLFAAGAQPQVLTLVRPISYPVGRGTPMLNSKVGWDHTQKWLV 988

Query:   180 ASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPR 239
             A F GK  S SGE +++VDLSKE+DA+L+GH IDGRILFPATG          K++    
Sbjct:   989 AKF-GKETS-SGETIVEVDLSKEDDAFLAGHTIDGRILFPATGYMTLAWQTFAKMQG--- 1043

Query:   240 DDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVS------EFELCESGSVAVSGR 293
               EF      +   N+  H  R  T+L+ N+   +  ++       FE+CESGS+AVSG+
Sbjct:  1044 -SEFHKT--PVVMENLVFH--RA-TILNKNAVV-KFGINFFDGTGAFEICESGSLAVSGK 1096

Query:   294 IRTPEDVSKEQLDLPELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFT 353
             I  PE +  E+L L E TP+  ++  EL + DVYK+LRLRGYDY G FRG+ +SD    T
Sbjct:  1097 ITIPESIDNEELPLEEQTPSAVAK--ELGTNDVYKELRLRGYDYGGIFRGIVRSDTVAST 1154

Query:   354 GKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKT-- 411
             GKL W  NWIS++DTMLQFSIL  N RELYLPTR++R  I+PAKH  L+  L+ +++   
Sbjct:  1155 GKLQWVDNWISFMDTMLQFSILSKNLRELYLPTRIERAVINPAKHFELLSALTKEEQVET 1214

Query:   412 -VPVAMY 417
              +PV  Y
Sbjct:  1215 GLPVQWY 1221
GO:0004312 "fatty acid synthase activity" evidence=ISS
GO:0016295 "myristoyl-[acyl-carrier-protein
GO:0009058 "biosynthetic process" evidence=IEA
GO:0004314 "[acyl-carrier-protein
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004313 "[acyl-carrier-protein
GO:0004316 "3-oxoacyl-[acyl-carrier-protein
GO:0016296 "palmitoyl-[acyl-carrier-protein
GO:0004320 "oleoyl-[acyl-carrier-protein
GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein
GO:0004319 "enoyl-[acyl-carrier-protein
GO:0004315 "3-oxoacyl-[acyl-carrier-protein
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
ZFIN|ZDB-GENE-030131-7802 fasn "fatty acid synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0042627 v(2)k05816 "v(2)k05816" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|620665 Fasn "fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P12785 Fasn "Fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P49327 FASN "Fatty acid synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWG0 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8A8 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P12276 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW07 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
pfam00698319 pfam00698, Acyl_transf_1, Acyl transferase domain 6e-18
smart00827298 smart00827, PKS_AT, Acyl transferase domain in pol 3e-09
COG33211061 COG3321, COG3321, Polyketide synthase modules and 5e-09
smart00826167 smart00826, PKS_DH, Dehydratase domain in polyketi 5e-04
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information 
 Score = 83.6 bits (207), Expect = 6e-18
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 2   LSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTP 61
           +  +G+        +A HS  +   G  L  +L  I P   PR   + ++S         
Sbjct: 176 VEARGVRARVIAVDYASHSPQVEAIGDALALALADIAP-RTPRVPFYSTTSGDPS----- 229

Query: 62  LAQQSSPAYHVNNLLSPVLFYEALQHV--PENAVVIEIAPHALLQAIIKR-----AKPGA 114
             ++    Y   NL +PV F EA+         V +E++PH +L A ++          A
Sbjct: 230 DQRELDAEYWYRNLRNPVRFAEAVLAAAEQGYLVFVEVSPHPVLLAAVEETLKSADGKDA 289

Query: 115 VSIGLTKRGAPDLPAHLLSGLGKLYNAGLQP 145
             +G   R   D     L  L   +  G+  
Sbjct: 290 TLVGTLIRDQGD-LVTFLYALAVAHLTGVAV 319

Length = 319
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|214837 smart00826, PKS_DH, Dehydratase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 418
KOG1202|consensus 2376 100.0
COG33211061 Polyketide synthase modules and related proteins [ 99.95
PF14765295 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_ 99.93
PF00698318 Acyl_transf_1: Acyl transferase domain; InterPro: 99.92
TIGR02816538 pfaB_fam PfaB family protein. The protein PfaB is 99.88
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 99.85
smart00827298 PKS_AT Acyl transferase domain in polyketide synth 99.71
TIGR03131295 malonate_mdcH malonate decarboxylase, epsilon subu 99.7
PLN02752343 [acyl-carrier protein] S-malonyltransferase 99.67
TIGR00128290 fabD malonyl CoA-acyl carrier protein transacylase 99.65
smart00826167 PKS_DH PKS_DH. 99.5
COG0331310 FabD (acyl-carrier-protein) S-malonyltransferase [ 99.48
KOG2926|consensus386 99.43
TIGR028132582 omega_3_PfaA polyketide-type polyunsaturated fatty 98.95
cd01288131 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier 92.02
TIGR01750140 fabZ beta-hydroxyacyl-[acyl carrier protein] dehyd 91.84
cd00493131 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier pr 91.49
PRK00006147 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Review 87.63
PF07977138 FabA: FabA-like domain; InterPro: IPR013114 Fatty 85.73
>KOG1202|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.1e-50  Score=405.52  Aligned_cols=395  Identities=52%  Similarity=0.867  Sum_probs=350.5

Q ss_pred             CCCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhccccc
Q psy9441           1 MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVL   80 (418)
Q Consensus         1 l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~   80 (418)
                      |+++|||++.++.|++|||||+|+.+.+++++.|+.+.+.+|+.+..|+||...+..|.++.....+++|.++|+.+||+
T Consensus       674 L~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~epK~rsarWlSTSipEa~W~s~la~tsSA~Y~vnNl~SPVL  753 (2376)
T KOG1202|consen  674 LRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPEPKPRSARWLSTSIPEAQWHSSLARTSSAEYHVNNLVSPVL  753 (2376)
T ss_pred             hhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcCCCCCcccchhhccCChhhhcChhhhhcchhhhhhccccHHH
Confidence            67899999999998999999999999999999999999988889999999999998898766777899999999999999


Q ss_pred             HHHHHhhCCCCcEEEEeCCchhhHHHHHHc-CCCcceeeccCCCCCChHHHHHHHHHHHHhcCCCCCccccCCCCccCCC
Q psy9441          81 FYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVG  159 (418)
Q Consensus        81 f~~ai~~~~~~~~~iEigp~~~L~~~~~~~-~~~~~~~~~l~r~~~~~~~~ll~~l~~L~~~G~~vdw~~l~~~~~~~~~  159 (418)
                      |.+|++.+.++.+.|||.||..|+..+|+. .+++++++.++|++++..+.+|..+|+||.+|.+++...++++.++|++
T Consensus       754 F~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL~p~~t~v~Lmkr~h~~NlEffL~~lgrly~aG~~~qi~~l~p~i~ypv~  833 (2376)
T KOG1202|consen  754 FHEALQHVPENAVVVEIAPHGLLQAILKRSLKPSCTNVSLMKRGHRNNLEFFLAGLGRLYAAGIQPQILALFPPIEYPVP  833 (2376)
T ss_pred             HHHHHHhCcccceEEEecchHHHHHHHHhhcCCccceehhhcCcccccHHHHHHHHHHHHHccCCccceeccCCCcccCC
Confidence            999999999999999999999999999988 8899999999999888999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCCCCCcccccccCCCCCCCCcceEEEeecCcccccccCceeCCEEEeecccHHHHHHHHHHHhh----
Q psy9441         160 RGTPMIQSLVEWDHSTEWSVASFAGKGGSRSGECVIDVDLSKEEDAYLSGHAIDGRILFPATGTEEAVEHFLQKIE----  235 (418)
Q Consensus       160 ~~~~v~LP~Ypf~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~----  235 (418)
                      ++++..-|..-|||+.-|..+.+....  .++..++..+++.+++.||.||.|+|+++||+++|+.+|+....+..    
T Consensus       834 rGTPmi~~lv~WDHtq~W~~~~f~~gs--~s~~a~~niD~~~edd~yL~~HtiDGRvLfPaTGymtlaW~tlak~qGldy  911 (2376)
T KOG1202|consen  834 RGTPMIGPLVKWDHTQKWLVPKFPGGS--GSSAAIYNIDLSKEDDHYLADHTIDGRVLFPATGYMTLAWKTLAKPQGLDY  911 (2376)
T ss_pred             CCCcCcccccCccccccccccccCCCC--CccceEEEccCCccccceeccceecceEEeccccchhHHHHHHhhhccCCc
Confidence            999999999999999999998876654  33677899999999999999999999999999999999999888765    


Q ss_pred             -CCCeeeeccccccceecccccCCCCC-ceEEEeccCCcceeeEEEEEEEeCCeEEEEEEEEecCCCCCCCCCCCCCCcc
Q psy9441         236 -SIPRDDEFIALLHEIHNTNIAGHPYR-GYTVLSDNSATHELAVSEFELCESGSVAVSGRIRTPEDVSKEQLDLPELTPA  313 (418)
Q Consensus       236 -~~~~~l~dv~~~~~~~~pl~~~~~~~-~~e~~~~~~~~~~~~~~~f~v~s~~~~h~~g~i~~~~~~~~~~~~~~~~~~~  313 (418)
                       ..++.++|+    .|+++-+++.+.. .+++.+-.      +...|+|.++..+..+|+|......++..++..+  .+
T Consensus       912 ~ktPVvfEdv----v~h~ATIL~k~~vvkl~v~~~~------gs~aFEi~e~~~l~~SGki~i~ed~~~~~~~l~e--~~  979 (2376)
T KOG1202|consen  912 EKTPVVFEDV----VFHRATILPKTGVVKLEVNLFP------GSGAFEICENGSLVVSGKIYIPEDPDPELLDLEE--SP  979 (2376)
T ss_pred             ccCceeeeee----eeeeeEeecCCceEEEEEEEcC------CCcceEEecCCcEEEeeeEeccCCCchhhccccc--CC
Confidence             368899999    9999999987421 22221111      5679999999999999999987766655444433  22


Q ss_pred             ccccccccChhHHHHHHHhcCCccCccCccccccccCCcEEEEecCCCchhHHHHHHHHHHhhhccCCccccceeeEEEE
Q psy9441         314 ISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCI  393 (418)
Q Consensus       314 ~~~~~~~~~~~~~Y~~~~~~G~~yG~~Fq~i~~~~~~~~~a~i~~~~~hP~lLD~~lQ~~~~~~~~~~~~lP~~i~~i~~  393 (418)
                      .....+.++.++.|+.|+-+|++||+.||+|-+....+..|++.|.++|-.++|.++|..++......+|+|.+|+++.|
T Consensus       980 ~~~~a~eL~t~dvYKElrLRGYdYg~~FqGI~~s~~s~~tG~L~W~dNWvsFmDtmLQ~siLs~~~~~LylPTrv~~~~I 1059 (2376)
T KOG1202|consen  980 TSAPAEELATADVYKELRLRGYDYGGHFQGILESDLSGDTGRLQWKDNWVSFMDTMLQFSILSSAKRELYLPTRVERAHI 1059 (2376)
T ss_pred             CcchhhhhhHHHHHHHHHhcccccchhhhhhhhhccccccceEEEeccHHHHHHHHHHHHHHhhcccceecccceeeeee
Confidence            23345588999999999999999999999998887777889999999999999999999999888899999999999999


Q ss_pred             cchhhHHHHhhcCCCc
Q psy9441         394 DPAKHKALVETLSGDK  409 (418)
Q Consensus       394 ~~~~~~~~~~~~~~~~  409 (418)
                      .+..|.+.....+++.
T Consensus      1060 dP~kH~e~~~~~~~~~ 1075 (2376)
T KOG1202|consen 1060 DPAKHLELLYTLQDKA 1075 (2376)
T ss_pred             ChHHHHHHHHhhcchh
Confidence            9999999988876653

>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A Back     alignment and domain information
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information
>TIGR02816 pfaB_fam PfaB family protein Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>PLN02752 [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>smart00826 PKS_DH PKS_DH Back     alignment and domain information
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>KOG2926|consensus Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway Back     alignment and domain information
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ Back     alignment and domain information
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation Back     alignment and domain information
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed Back     alignment and domain information
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
2vz8_A 2512 Crystal Structure Of Mammalian Fatty Acid Synthase 2e-76
3hhd_A965 Structure Of The Human Fatty Acid Synthase Ks-Mat D 2e-55
2jfk_A433 Structure Of The Mat Domain Of Human Fas With Malon 8e-40
2jfd_A425 Structure Of The Mat Domain Of Human Fas Length = 4 8e-37
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 Back     alignment and structure 
Iteration: 1

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/422 (42%), Positives = 230/422 (54%), Gaps = 22/422 (5%)
Query: 9    KAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSP 68
            K     G AFHS ++    P L   L ++I  PKPRS RW+S+SIPE  W   LA+  S 
Sbjct: 673  KEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSA 732
Query: 69   AYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKRAKPGAVS-IGLTKRGAPDL 127
             Y VNNL+SPVLF EALQHVP +AVV+EIAPHALLQA++KR+   + + I L K+   D 
Sbjct: 733  EYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHRDN 792
Query: 128  PAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAG--K 185
                LS +G+L+ AG+    N L PPV+FP  RGTP+I   ++WDHS  W V S A    
Sbjct: 793  LEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPSAADFPS 852
Query: 186  GGSRSGECVIDVDLSKEE-DAYLSGHAIDGRILFPATG----TEEAVEHFL-QKIESIPR 239
            G S S   V   D+S E  D YL  H IDGR+LFP TG    T + +   L Q +E  P 
Sbjct: 853  GSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLARALSQNLEETPV 912
Query: 240  DDEFIALLHEIHNTNIAGHPYRGYTVLSDN--SATHELAVSEFELCESGSVAVSGRIRTP 297
              E + L    H   I   P  G   L      A+H   VS+     +GS+  SG++   
Sbjct: 913  VFEDVTL----HQATIL--PKTGTVSLEVRLLEASHAFEVSD----SNGSLIASGKVYQW 962
Query: 298  EDVSKEQLDL-PELTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKL 356
            E    +  D    + PA S+    LS  DVYKDLRLRGYDY   F+ V +SD +G  G+L
Sbjct: 963  ESPDPKLFDTRAAVDPADSTAEFRLSQGDVYKDLRLRGYDYGPFFQLVLESDLEGNRGRL 1022
Query: 357  DWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAM 416
             W  +W+S++D ML  SIL      LYLPTR   + IDP  H+  + TL    +   V +
Sbjct: 1023 QWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFTSIRIDPVTHRQKLYTLQDTTQAADVVV 1082
Query: 417  YR 418
             R
Sbjct: 1083 DR 1084
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 Back     alignment and structure
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa Length = 433 Back     alignment and structure
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas Length = 425 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 1e-93
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 2e-07
3hhd_A965 Fatty acid synthase; transferase, multienzyme, meg 5e-71
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 1e-04
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 1e-09
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 7e-08
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3hrq_A357 PKS, aflatoxin biosynthesis polyketide synthase; h 5e-05
3kg6_A285 CURF; polyketide synthase, double hotdog fold, deh 2e-04
3kg9_A296 CURK; polyketide synthase, double hotdog fold, deh 5e-04
3kg8_A308 CURJ; polyketide synthase, double hotdog fold, deh 5e-04
3kg7_A293 CURH; polyketide synthase, double hotdog fold, deh 6e-04
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
 Score =  307 bits (787), Expect = 1e-93
 Identities = 172/422 (40%), Positives = 225/422 (53%), Gaps = 20/422 (4%)

Query: 8    CKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSS 67
             K     G AFHS ++    P L   L ++I  PKPRS RW+S+SIPE  W   LA+  S
Sbjct: 672  VKEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFS 731

Query: 68   PAYHVNNLLSPVLFYEALQHVPENAVVIEIAPHALLQAIIKR-AKPGAVSIGLTKRGAPD 126
              Y VNNL+SPVLF EALQHVP +AVV+EIAPHALLQA++KR  +     I L K+   D
Sbjct: 732  AEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHRD 791

Query: 127  LPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVGRGTPMIQSLVEWDHSTEWSVASFAG-- 184
                 LS +G+L+ AG+    N L PPV+FP  RGTP+I   ++WDHS  W V S A   
Sbjct: 792  NLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPSAADFP 851

Query: 185  KGGSRSGECVIDVDLSKE-EDAYLSGHAIDGRILFPATGTEEAVEHFLQKIESIPRDDEF 243
             G S S   V   D+S E  D YL  H IDGR+LFP TG        L +  S    +E 
Sbjct: 852  SGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLARALS-QNLEET 910

Query: 244  IALLHEIHNTNIAGHPYRGYTVLSDNSATH-ELAVSE----FELCES-GSVAVSGRIRTP 297
              +  ++             T+L        E+ + E    FE+ +S GS+  SG++   
Sbjct: 911  PVVFEDVT--------LHQATILPKTGTVSLEVRLLEASHAFEVSDSNGSLIASGKVYQW 962

Query: 298  EDVSKEQLDLPE-LTPAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKL 356
            E    +  D    + PA S+    LS  DVYKDLRLRGYDY   F+ V +SD +G  G+L
Sbjct: 963  ESPDPKLFDTRAAVDPADSTAEFRLSQGDVYKDLRLRGYDYGPFFQLVLESDLEGNRGRL 1022

Query: 357  DWTGNWISYIDTMLQFSILGINTRELYLPTRMQRVCIDPAKHKALVETLSGDKKTVPVAM 416
             W  +W+S++D ML  SIL      LYLPTR   + IDP  H+  + TL    +   V +
Sbjct: 1023 QWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFTSIRIDPVTHRQKLYTLQDTTQAADVVV 1082

Query: 417  YR 418
             R
Sbjct: 1083 DR 1084
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Length = 401 Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold, iterative type I PKS, norsolorinic acid, product template domain; HET: PLM; 1.80A {Aspergillus parasiticus} PDB: 3hrr_A* Length = 357 Back     alignment and structure
>3kg6_A CURF; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.70A {Lyngbya majuscula} Length = 285 Back     alignment and structure
>3kg9_A CURK; polyketide synthase, double hotdog fold, dehydratase, lyase; 1.70A {Lyngbya majuscula} Length = 296 Back     alignment and structure
>3kg8_A CURJ; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.45A {Lyngbya majuscula} Length = 308 Back     alignment and structure
>3kg7_A CURH; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.77A {Lyngbya majuscula} Length = 293 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 100.0
3hhd_A965 Fatty acid synthase; transferase, multienzyme, meg 100.0
3tzy_A491 Polyketide synthase PKS13; acyltransferase, long f 100.0
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 100.0
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 100.0
3kg8_A308 CURJ; polyketide synthase, double hotdog fold, deh 99.97
3kg6_A285 CURF; polyketide synthase, double hotdog fold, deh 99.97
3kg9_A296 CURK; polyketide synthase, double hotdog fold, deh 99.97
3el6_A313 Erythromycin dehydratase; dehydratase double hotdo 99.96
3kg7_A293 CURH; polyketide synthase, double hotdog fold, deh 99.96
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 99.95
3hrq_A357 PKS, aflatoxin biosynthesis polyketide synthase; h 99.93
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 99.93
2h1y_A321 Malonyl coenzyme A-acyl carrier protein transacyl; 99.88
3g87_A394 Malonyl COA-acyl carrier protein transacylase; ssg 99.86
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 99.86
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 99.86
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 99.85
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 99.85
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 99.85
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 99.85
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 99.85
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 99.85
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 99.85
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 99.84
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 99.84
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 99.84
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 99.65
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 99.6
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.46
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.09
2uva_G2060 Fatty acid synthase beta subunits; fungal, dehydra 98.41
2uv8_G2051 Fatty acid synthase subunit beta (FAS1); fatty aci 98.38
3esi_A129 Uncharacterized protein; protein from erwinia caro 96.57
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 96.1
4i83_A152 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; 92.17
4h4g_A160 (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; 90.16
3d6x_A146 (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; 89.88
2gll_A171 FABZ, (3R)-hydroxymyristoyl-acyl carrier protein d 89.05
1u1z_A168 (3R)-hydroxymyristoyl-[acyl carrier protein] dehyd 82.37
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-58  Score=533.69  Aligned_cols=408  Identities=41%  Similarity=0.651  Sum_probs=319.9

Q ss_pred             CCCCCceeeEeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhccccc
Q psy9441           1 MLSPQGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVL   80 (418)
Q Consensus         1 l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~   80 (418)
                      |+++|+++++|+|.++||||++|+|++++|++.|+++.+.++++.+||+|++++...+........+++||++|+|+||+
T Consensus       665 l~~~g~~~~~L~v~~~AfHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~yw~~~l~~pV~  744 (2512)
T 2vz8_A          665 LKREDVFVKEVRTGGIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNNLVSPVL  744 (2512)
T ss_dssp             HHTTTCCEEEECCTTCCCSSGGGTTTHHHHHHHHHHHSCSCCBCCTTEECSSSCGGGTTSSSTTBCCHHHHHHHHHSCEE
T ss_pred             HHHCCceEEEcCCCCccccHHHHHhHHHHHHHHHHhccccCCCCCceEEEeecCCCcccCcccccCCHHHHHHHhhcccc
Confidence            45789999999993389999999999999999999987654447889999999876533212245689999999999999


Q ss_pred             HHHHHhhCCCCcEEEEeCCchhhHHHHHHc-CCCcceeeccCCCCCChHHHHHHHHHHHHhcCCCCCccccCCCCccCCC
Q psy9441          81 FYEALQHVPENAVVIEIAPHALLQAIIKRA-KPGAVSIGLTKRGAPDLPAHLLSGLGKLYNAGLQPRLNQLLPPVKFPVG  159 (418)
Q Consensus        81 f~~ai~~~~~~~~~iEigp~~~L~~~~~~~-~~~~~~~~~l~r~~~~~~~~ll~~l~~L~~~G~~vdw~~l~~~~~~~~~  159 (418)
                      |.++|+.+.+..+|||||||++|+++++++ .....++++++|++.++..++++++|+||++|++|||..+|+...++..
T Consensus       745 F~~av~~l~~~~~fvEiGP~~~L~~~~~~~l~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~  824 (2512)
T 2vz8_A          745 FQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHRDNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAP  824 (2512)
T ss_dssp             HHHHHTTSCSSCEEEECSSSCTTHHHHHHHSCTTSEEECSCCTTCSCHHHHHHHHHHHHHHHTCCCCGGGTSCCCCSSCC
T ss_pred             HHHHHHhhhcCCEEEEECCcHHHHHHHHHHhccCCcEEeeccCCCCCHHHHHHHHHHHHHHCCCcCCHHHhCCccccCcc
Confidence            999999998889999999999999999999 6667899999987347799999999999999999999999876544433


Q ss_pred             CCCcccCCCCCCCCCCCcccccccCCCCC--CCCcceEEEeecCcc-cccccCceeCCEEEeecccHHHHHHHHHHHhhC
Q psy9441         160 RGTPMIQSLVEWDHSTEWSVASFAGKGGS--RSGECVIDVDLSKEE-DAYLSGHAIDGRILFPATGTEEAVEHFLQKIES  236 (418)
Q Consensus       160 ~~~~v~LP~Ypf~~~~~W~~~~~~~~~~~--~~~~~~~~~~l~~~~-~~~L~dH~v~g~~v~P~a~yle~a~~A~~~~~~  236 (418)
                      ..+++.||+|||||++||.++........  ......|..+++.+. .|||+||+|+|++|+||++|++||++|+.+..+
T Consensus       825 ~~~~~~lP~y~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~H~v~g~~~~P~~~y~~~a~~a~~~~~~  904 (2512)
T 2vz8_A          825 RGTPLISPHIKWDHSQAWDVPSAADFPSGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLARALS  904 (2512)
T ss_dssp             TTCCCSGGGCCCCCCSCCCCCCGGGSCCSCCCTTEEEEEEECSTTSGGGGGGGCEETTEEECCHHHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCCCCCCCCcccccCcccccccCCCCCCceEEEEEEcccccCCchhccCeECCEEeeCcHHHHHHHHHHHHHhhc
Confidence            44667899999999999998753222111  123345666676666 899999999999999999999999999887652


Q ss_pred             -----CCeeeeccccccceecccccCCCCCceEEEeccCCcceeeEEEEEEEe-CCeEEEEEEEEecCCCCCCCCCCCCC
Q psy9441         237 -----IPRDDEFIALLHEIHNTNIAGHPYRGYTVLSDNSATHELAVSEFELCE-SGSVAVSGRIRTPEDVSKEQLDLPEL  310 (418)
Q Consensus       237 -----~~~~l~dv~~~~~~~~pl~~~~~~~~~e~~~~~~~~~~~~~~~f~v~s-~~~~h~~g~i~~~~~~~~~~~~~~~~  310 (418)
                           .++.++|+    .|.+||+++++ ..+|+++....    ....|+|++ .|+.||+|.+..........++....
T Consensus       905 ~~~~~~~~~~~~~----~~~~~l~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  975 (2512)
T 2vz8_A          905 QNLEETPVVFEDV----TLHQATILPKT-GTVSLEVRLLE----ASHAFEVSDSNGSLIASGKVYQWESPDPKLFDTRAA  975 (2512)
T ss_dssp             CCGGGCCEEEEEE----EECSCCEECSS-SEEEEEEEEET----TTTEEEEEETTCCEEEEEEEEECSSCCGGGGCCCCS
T ss_pred             cccccCCeEEEee----EEeeceeecCC-CCEEEEEEEEc----CCceEEEecCCCcEEEEEEEEecCCCCccccccccc
Confidence                 36789999    99999999875 34555443221    235799988 89999999997654332222221111


Q ss_pred             C-ccccccccccChhHHHHHHHhcCCccCccCccccccccCCcEEEEecCCCchhHHHHHHHHHHhhhccCCccccceee
Q psy9441         311 T-PAISSEMLELSSADVYKDLRLRGYDYSGAFRGVSQSDNKGFTGKLDWTGNWISYIDTMLQFSILGINTRELYLPTRMQ  389 (418)
Q Consensus       311 ~-~~~~~~~~~~~~~~~Y~~~~~~G~~yG~~Fq~i~~~~~~~~~a~i~~~~~hP~lLD~~lQ~~~~~~~~~~~~lP~~i~  389 (418)
                      + .....+...++.+++|+.|+..|++|||.||++++++.++..+++.++..||++||+|||+.++.......|+|++|+
T Consensus       976 ~~~~~~~~~~~~~~~~~Y~~~~~~g~~yg~~F~~~~~~~~~~~~~~~~~~~~~~~~lD~~lq~~~~~~~~~~~~~p~~i~ 1055 (2512)
T 2vz8_A          976 VDPADSTAEFRLSQGDVYKDLRLRGYDYGPFFQLVLESDLEGNRGRLQWNDSWVSFLDAMLHMSILAPGQLGLYLPTRFT 1055 (2512)
T ss_dssp             SCCCCCSSSCEEEHHHHHHHHHHHTCCCCGGGCCEEEEETTSSEEEEEECSCHHHHHHHHHHHHHTCTTCCSCEEECBCS
T ss_pred             cccccccccccCCHHHHHHHHHHhcCcCCchhcCeeeEEEcCceEEEecCCccchHHHHHHHHHHHhccCCcceecceEe
Confidence            1 112234556788999999999999999999999999998888889888889999999999987766666789999999


Q ss_pred             EEEEcchhhHHHHhhcCCCceeeeeeec
Q psy9441         390 RVCIDPAKHKALVETLSGDKKTVPVAMY  417 (418)
Q Consensus       390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (418)
                      ++++++..+..............++.+|
T Consensus      1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1083 (2512)
T 2vz8_A         1056 SIRIDPVTHRQKLYTLQDTTQAADVVVD 1083 (2512)
T ss_dssp             CCEECHHHHHHHCEECSSSCEEEEEEEE
T ss_pred             EEEEecCCccceeEeccCCCceeEEEEE
Confidence            9999987765443333333334555544
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>3kg8_A CURJ; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.45A {Lyngbya majuscula} Back     alignment and structure
>3kg6_A CURF; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.70A {Lyngbya majuscula} Back     alignment and structure
>3kg9_A CURK; polyketide synthase, double hotdog fold, dehydratase, lyase; 1.70A {Lyngbya majuscula} Back     alignment and structure
>3el6_A Erythromycin dehydratase; dehydratase double hotdog fold CIS-proline, acyltransferase, antibiotic biosynthesis; 1.85A {Saccharopolyspora erythraea} Back     alignment and structure
>3kg7_A CURH; polyketide synthase, double hotdog fold, dehydratase, lyase; 2.77A {Lyngbya majuscula} Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Back     alignment and structure
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold, iterative type I PKS, norsolorinic acid, product template domain; HET: PLM; 1.80A {Aspergillus parasiticus} PDB: 3hrr_A* Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum} Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis} Back     alignment and structure
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp} Back     alignment and structure
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A* Back     alignment and structure
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 418
d1mlaa1235 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of m 3e-06
d1nm2a1253 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of m 4e-05
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 5   QGMCKAFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQ 64
           +G      V     H   +  A  KL   L +I       +   +++   +         
Sbjct: 115 RGKFMQEAVPEVPSHCALMKPAADKLAVELAKI--TFNAPTVPVVNNVDVKCETNG---- 168

Query: 65  QSSPAYHVNNLLSPVLFYEALQHVPENAV--VIEIAPHALLQAIIKRAKPGAVSIGL 119
            +     V  L +PV + ++++++    V  + E+ P  +L  + KR      +  L
Sbjct: 169 DAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASAL 225
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 253 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
d1nm2a1253 Catalytic domain of malonyl-CoA ACP transacylase F 99.78
d1mlaa1235 Catalytic domain of malonyl-CoA ACP transacylase F 99.75
d1u1za_145 (3R)-hydroxymyristoyl ACP dehydrase FabZ {Pseudomo 88.49
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Streptomyces coelicolor A3(2) [TaxId: 100226]

Probab=99.78  E-value=8.5e-20  Score=165.23  Aligned_cols=118  Identities=25%  Similarity=0.320  Sum_probs=96.0

Q ss_pred             EeecCCcccCCcchhhhHHHHHHHHhhhCCCCCCCCCeEEEccCCCCCCCCccccCCCchhhHhhhcccccHHHHHhhCC
Q psy9441          10 AFDVAGHAFHSKYIAEAGPKLRSSLDRIIPAPKPRSARWISSSIPEDHWGTPLAQQSSPAYHVNNLLSPVLFYEALQHVP   89 (418)
Q Consensus        10 ~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~v~~~~~~~~~~~~~~~~~yw~~nl~~pV~f~~ai~~~~   89 (418)
                      .+.+ ++||||++|+|+.++|.+.|+++.+++  |.+|+|||++|+.+.    +....++||++|+++||+|.++|+.+.
T Consensus       132 ~~~~-sgafHs~~m~~~~~~~~~~l~~~~~~~--p~~p~~S~~~g~~~~----~~~~~~~~l~~ql~~pV~f~~~i~~l~  204 (253)
T d1nm2a1         132 AVTV-AGAFHTRHMAPAVDKLAEAAKALTPAD--PKVTYVSNKDGRAVA----SGTEVLDRLVGQVANPVRWDLCMETFK  204 (253)
T ss_dssp             HTSC-SSCTTSGGGHHHHHHHHHHHTTCCCCC--CSSEEBCTTTSCBCC----CHHHHHHHHHHHTTSCEEHHHHHHHHH
T ss_pred             cccC-CCCCCChhHhhhHHHHHHHHHhhhccc--cccccccccccchhh----hcchhHhhhhhhhcccccHHHHHHHHH
Confidence            3567 899999999999999999999999987  999999999999872    223347999999999999999999997


Q ss_pred             C--CcEEEEeCCchhhHHHHHHcCCCcceeeccCCCCCChHHHHHHHHHH
Q psy9441          90 E--NAVVIEIAPHALLQAIIKRAKPGAVSIGLTKRGAPDLPAHLLSGLGK  137 (418)
Q Consensus        90 ~--~~~~iEigp~~~L~~~~~~~~~~~~~~~~l~r~~~~~~~~ll~~l~~  137 (418)
                      +  .++|||||||++|++++|++..+...++. . . .++.+.+++.+++
T Consensus       205 ~~gv~~fvEiGP~~~Ls~l~k~~~~~~~~~sv-~-~-~~~l~~~~~~~a~  251 (253)
T d1nm2a1         205 ELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL-K-T-PDDLDAARELVAE  251 (253)
T ss_dssp             HTTCCEEEECSSCSHHHHHHHHHSTTCEEEEC-C-S-GGGHHHHHHHHHH
T ss_pred             HCCCCEEEEeCCcHHHHHHHHHHcCCCCeeec-C-C-HHHHHHHHHHHHh
Confidence            6  48999999999999999999333333332 2 2 3567777766654
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u1za_ d.38.1.6 (A:) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure