Psyllid ID: psy945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MLSRVAVSATRALIKPKSLAASYSAASAHSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEccccccccccEEccccEEEEccEEEEccccccccccHHHHHHHHHHccccccHHHcccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccccccccccccHccHHHHHHHHHccccHHHccHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEcccccccccEEEEcEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccHHccccEEEEccccccccEcccccccccccccccccHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLSRVAVSATRALIKPKSLAASYsaasahsnepplkqkekgdwknltLEEKKTLYRASFAQTFVEMNastgewkgAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGldvielppdedlpesvfiedTAVIVNGIVLitkpgntqrhKEVAVSATRALIKPKSLAASYsaasahsnepvakehfdffpnrevvgygfngepgyidnpmfpypsirFKAITKeleplkqkekgdwknltLEEKKTLYRASFAQTFVemnaptgewkgaFGIAFMVVTVSLLTYVLMYKVGifpekaetLSEEHRQEMLQKMIDlrwnpitgtaskwdyekndwkk
Flexible Loop (DISEMBL)
MLSRVAVsatralikpkslAASYSAasahsnepplkqkekgdwKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVlitkpgntqrhKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKeleplkqkekgdwknltlEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMidlrwnpitgtaskwdyekndwkk
Low Complexity Region (SEG)
MLSRVAVSATRALIKPKslaasysaasahsNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKslaasysaasahsNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK
Disordered region (IsUnstruct)
********************************************NLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGN******VAV*****L**********************KEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPL*****GDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEK************LQKMIDLRWNPITGTASKWDY*******
Disordered Region (DISOPRED)
*********TR*LIKPKSLAASYSAAS****************KNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQ*******SATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKE**************LTLEEKKTLYRASF*************WKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDW**
Disordered Region (DISEMBL)
********ATRALIKPKS**********************GDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPG**********SATRALIKPKS*************EPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK
Disordered Region (DISPRO)
****VAVSATRALIKPKSLAASYSAASAHSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSRVAVSATRALIKPKSLAASYSAASAHSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q91W29	172	Cytochrome c oxidase subu	yes	N/A	0.380	0.761	0.404	5e-23
Q96KJ9	171	Cytochrome c oxidase subu	yes	N/A	0.363	0.730	0.425	1e-22
Q91Y94	172	Cytochrome c oxidase subu	yes	N/A	0.334	0.668	0.422	2e-22
P80971	176	Cytochrome c oxidase subu	N/A	N/A	0.479	0.937	0.361	2e-21
Q9I8U0	169	Cytochrome c oxidase subu	N/A	N/A	0.380	0.775	0.401	4e-21
O46581	144	Cytochrome c oxidase subu	N/A	N/A	0.380	0.909	0.386	7e-21
P00423	169	Cytochrome c oxidase subu	yes	N/A	0.380	0.775	0.386	2e-20
O46586	137	Cytochrome c oxidase subu	N/A	N/A	0.386	0.970	0.377	3e-20
P10888	169	Cytochrome c oxidase subu	no	N/A	0.380	0.775	0.379	4e-20
O46578	144	Cytochrome c oxidase subu	N/A	N/A	0.380	0.909	0.379	5e-20

>sp|Q91W29|COX42_MOUSE Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Mus musculus GN=Cox4i2 PE=2 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 80/136 (58%), Gaps = 5/136 (3%)

Query: 213 YID---NPMFPYPSIRFKA-ITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMN 268
           Y+D      +P P   F   +++E   LK+KEKG W  L+  EK  LYR  F +TF EMN
Sbjct: 38  YVDCYAQRSYPMPDEPFCTELSEEQRALKEKEKGSWTQLSQAEKVALYRLQFHETFAEMN 97

Query: 269 APTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPI 328
             + EWK   G  F  +  + L  +   +V +FP+K  TL+EE + + LQ+++D++ NPI
Sbjct: 98  HRSNEWKTVMGCVFFFIGFTALV-IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPI 156

Query: 329 TGTASKWDYEKNDWKK 344
            G A+ WDYEK +WKK
Sbjct: 157 QGLAAHWDYEKKEWKK 172

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
Mus musculus (taxid: 10090)

>sp|Q96KJ9|COX42_HUMAN Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Homo sapiens GN=COX4I2 PE=1 SV=2

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 2/127 (1%)

Query: 219 FPYPSIRFKA-ITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGA 277
           +P P   F   +  E + LK+KEKG W  LT  EK  LYR  F +TF EMN  + EWK  
Sbjct: 46  YPMPEEPFCTELNAEEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKTV 105

Query: 278 FGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDY 337
            G  F  +  + L  +   +V +FP K  TL++E + + LQ+M+D++ NP+ G AS+WDY
Sbjct: 106 MGCVFFFIGFAALV-IWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDY 164

Query: 338 EKNDWKK 344
           EK  WKK
Sbjct: 165 EKKQWKK 171

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Homo sapiens (taxid: 9606)

>sp|Q91Y94|COX42_RAT Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Rattus norvegicus GN=Cox4i2 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 1/116 (0%)

Query: 229 ITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVS 288
           +++E   LK+KEKG W  L+  EK  LYR  F +TF EMN  + EWK   G  F  +  +
Sbjct: 58  LSEEQRALKEKEKGSWAQLSQAEKVALYRLQFHETFAEMNHRSNEWKTVMGCVFFFIGFT 117

Query: 289 LLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 344
            L  +   +V +FP+K  TL+EE + + LQ+++D++ NPI G ++ WDYEK +WKK
Sbjct: 118 ALV-IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDYEKKEWKK 172

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Rattus norvegicus (taxid: 10116)

>sp|P80971|COX42_THUOB Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Thunnus obesus PE=1 SV=2

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 15/180 (8%)

Query: 166 RALIKPKSLAA-SYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSI 224
           R+L+  ++ AA S S+A   S++    E  D              +P Y D    P P  
Sbjct: 10  RSLLAGRATAAFSTSSARMASHDLEVAESVDM------------SKPLYWDRLDTPLPDR 57

Query: 225 RFKA-ITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFM 283
            +K  +T   + LKQKEKG W  L+ EEK  LYR  F QT+ EM  P+ EWK  FG  F+
Sbjct: 58  PYKEDLTAADKSLKQKEKGPWGQLSKEEKIALYRLMFCQTYSEMKQPSSEWKTVFGGIFI 117

Query: 284 VVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 343
            +  + L  V    + ++P +  T  +E + + L++M+D+R NPI G ++KWDYEK  WK
Sbjct: 118 FLGFTGLV-VWWQALYVYPPRPRTFDDEWKAKQLKRMLDMRVNPIEGFSAKWDYEKGQWK 176

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Thunnus obesus (taxid: 8241)

EC: 1

EC: .

EC: 9

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9I8U0|COX41_THUOB Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Thunnus obesus PE=2 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 6/137 (4%)

Query: 211 PGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y D    P P I + +A++ E + LK+KEKG W  L+ EEK  LYR SF Q+F EMN 
Sbjct: 36  PAYFDRRENPLPDICYVQALSPEQQSLKEKEKGSWAALSNEEKIALYRISFKQSFAEMNK 95

Query: 270 PTGEWKGAFG--IAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
            + EWK   G  + F+  T  ++ +   Y  G  P    T   E++ + LQ+M+D+R NP
Sbjct: 96  GSSEWKSVVGGMLFFIGFTGLVVLWQRKYVYGAVP---HTFDPEYKAKELQRMLDMRINP 152

Query: 328 ITGTASKWDYEKNDWKK 344
           + G ++ WDYE   WKK
Sbjct: 153 VEGFSAHWDYENKQWKK 169

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Thunnus obesus (taxid: 8241)

EC: 1

EC: .

EC: 9

EC: .

EC: 3

EC: .

EC: 1

>sp|O46581|COX41_THEGE Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Theropithecus gelada GN=COX4I1 PE=3 SV=1

 Score =  101 bits (252), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EMN 
Sbjct: 11  PAYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNR 70

Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
            + EWK   G A  F  +T  ++ +   Y  G  P   +T  +E      ++M+D++ NP
Sbjct: 71  RSNEWKTVVGTAMFFFGITALIVMWEKRYVYGPLP---QTFDKEWVAMQTKRMLDMKVNP 127

Query: 328 ITGTASKWDYEKNDWKK 344
           I G ASKWDYEKN+WKK
Sbjct: 128 IQGLASKWDYEKNEWKK 144

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Theropithecus gelada (taxid: 9565)

>sp|P00423|COX41_BOVIN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Bos taurus GN=COX4I1 PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 6/137 (4%)

Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EMN 
Sbjct: 36  PSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR 95

Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
            T EWK   G A  F+  T  LL +   Y  G  P    T  EE   +  ++M+D++  P
Sbjct: 96  STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP---HTFEEEWVAKQTKRMLDMKVAP 152

Query: 328 ITGTASKWDYEKNDWKK 344
           I G ++KWDY+KN+WKK
Sbjct: 153 IQGFSAKWDYDKNEWKK 169

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Bos taurus (taxid: 9913)

>sp|O46586|COX41_PERPO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Perodicticus potto edwarsi GN=COX4I1 PE=3 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 2/135 (1%)

Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y+D   +P P +   K ++   + LK+KEK  W NL+++EK  LYR  F ++F EMN 
Sbjct: 4   PSYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSNLSMDEKVELYRIQFKESFAEMNR 63

Query: 270 PTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPIT 329
            T EWK   G A + +  + L  V+  K  ++     T   +   +  +KM+D++ NPI 
Sbjct: 64  GTNEWKTVVGTAMLFIGFTALI-VIWEKRYVYGPIPHTFDPDWVAKQTKKMLDMKVNPIQ 122

Query: 330 GTASKWDYEKNDWKK 344
           G A+KWDYEK +WKK
Sbjct: 123 GFAAKWDYEKQEWKK 137

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Perodicticus potto edwarsi (taxid: 9473)

>sp|P10888|COX41_RAT Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Rattus norvegicus GN=Cox4i1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 6/137 (4%)

Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y+D   +P P +   K ++   + LK+KEK DW +L+ +EK  LYR  F ++F EMN 
Sbjct: 36  PSYVDRRDYPLPDVAHVKLLSASQKALKEKEKADWSSLSRDEKVQLYRIQFNESFAEMNK 95

Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
            T EWK   G+A  F+  T  +L +   Y  G  P    T   +      ++M+D++ NP
Sbjct: 96  GTNEWKTVVGLAMFFIGFTALVLIWEKSYVYGPIP---HTFDRDWVAMQTKRMLDMKVNP 152

Query: 328 ITGTASKWDYEKNDWKK 344
           I G ++KWDY KN+WKK
Sbjct: 153 IQGFSAKWDYNKNEWKK 169

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Rattus norvegicus (taxid: 10116)

>sp|O46578|COX41_GORGO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Gorilla gorilla gorilla GN=COX4I1 PE=3 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 6/137 (4%)

Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EMN 
Sbjct: 11  PAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNR 70

Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
            + EWK   G A  F+  T  ++ +   Y  G  P   ++  +E   +  ++M+D++ NP
Sbjct: 71  GSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLP---QSFDKEWVAKQTKRMLDMKVNP 127

Query: 328 ITGTASKWDYEKNDWKK 344
           I G ASKWDYEKN+WKK
Sbjct: 128 IQGLASKWDYEKNEWKK 144

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Gorilla gorilla gorilla (taxid: 9595)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
110456545	155	cytochrome c oxidase polypeptide IV-like	0.450	1.0	1.0	2e-87
118918433	178	cytochrome c oxidase polypeptide IV [Bom	0.497	0.960	0.511	9e-43
282158083	175	cytochrome c oxidase subunit IV [Triboli	0.421	0.828	0.541	2e-41
357619810	174	cytochrome c oxidase polypeptide IV [Dan	0.418	0.827	0.544	1e-40
242247383	196	cytochrome c oxidase polypeptide IV-like	0.494	0.867	0.488	2e-40
354549511	178	cytochrome c oxidase polypeptide IV [Ant	0.497	0.960	0.466	2e-39
308512695	179	cytochrome c oxidase polypeptide IV [Bis	0.465	0.893	0.484	3e-39
389608841	174	cytochrome c oxidase subunit iv [Papilio	0.418	0.827	0.517	6e-39
332375004	180	unknown [Dendroctonus ponderosae]	0.418	0.8	0.524	1e-38
149287114	180	cytochrome c oxidase polyprotein IV [Orn	0.453	0.866	0.518	2e-38

>gi|110456545|gb|ABG74722.1| cytochrome c oxidase polypeptide IV-like protein, partial [Diaphorina citri]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 190 AKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTL 249
           AKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTL
Sbjct: 1   AKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTL 60

Query: 250 EEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLS 309
           EEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLS
Sbjct: 61  EEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLS 120

Query: 310 EEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 344
           EEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK
Sbjct: 121 EEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 155

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118918433|ref|NP_001073120.1| cytochrome c oxidase polypeptide IV [Bombyx mori] gi|95102610|gb|ABF51243.1| cytochrome c oxidase subunit IV [Bombyx mori] gi|110333473|gb|ABG67687.1| cytochrome c oxidase polypeptide IV [Bombyx mori]

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 120/178 (67%), Gaps = 7/178 (3%)

Query: 166 RALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIR 225
           RALI    +     A S  + E +AK       +RE VGYGFNG+P Y+D P FP P+IR
Sbjct: 8   RALINAIRVPVCARAGSTGNTE-LAK-----IGDREWVGYGFNGQPNYVDRPDFPLPAIR 61

Query: 226 FKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVV 285
           F+  T +++ L++KEKGDW+ LTLEEKKTLYRASF QTF E  APTGEWKG  G A ++ 
Sbjct: 62  FREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLS 121

Query: 286 TVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 343
           +++   Y+ M KV ++    ++LSEE ++  LQ+M+DL+ NPI G ASKWDYE N WK
Sbjct: 122 SLAAWIYMAM-KVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYENNRWK 178

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282158083|ref|NP_001164085.1| cytochrome c oxidase subunit IV [Tribolium castaneum] gi|270011048|gb|EFA07496.1| hypothetical protein TcasGA2_TC009512 [Tribolium castaneum]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 199 NREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRA 258
           NRE+VG+GFNG+P Y D   FP P+IR+K  T +++ L++KEKGDW+ LT+EEKK LYRA
Sbjct: 31  NREIVGFGFNGQPNYADRVDFPLPAIRWKENTPDIQALREKEKGDWRKLTIEEKKALYRA 90

Query: 259 SFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQ 318
           SF QTF EM APTGEWK   GI+F++V ++L  +  M K  ++    E+ +EE+R+  L+
Sbjct: 91  SFCQTFAEMKAPTGEWKSIVGISFVLVAIALWGFYGM-KTFVYAPLPESFNEENRRAQLR 149

Query: 319 KMIDLRWNPITGTASKWDYEKNDWKK 344
           ++IDL+ NP+ G +SKWDYEK+DWKK
Sbjct: 150 RIIDLQINPVQGLSSKWDYEKDDWKK 175

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619810|gb|EHJ72239.1| cytochrome c oxidase polypeptide IV [Danaus plexippus]

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 106/145 (73%), Gaps = 1/145 (0%)

Query: 199 NREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRA 258
           +RE VGYGFNG P Y+D   FP P++RF+A T +++ L++KEKGDW+ LTLEEKK LYRA
Sbjct: 31  DREWVGYGFNGRPNYVDRNDFPLPAVRFRADTPDVKALREKEKGDWRKLTLEEKKALYRA 90

Query: 259 SFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQ 318
           SF QTF E  APTGEWKGA G A ++ ++SL  Y+ M K  ++    E+ SEE ++  L+
Sbjct: 91  SFCQTFAEFQAPTGEWKGALGWALVMASMSLWFYMAMKKF-VYNPLPESFSEESQKAQLK 149

Query: 319 KMIDLRWNPITGTASKWDYEKNDWK 343
           +M+DL+ NP+ G +SKWDYE N WK
Sbjct: 150 RMLDLKVNPVDGLSSKWDYENNRWK 174

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247383|ref|NP_001156047.1| cytochrome c oxidase polypeptide IV-like [Acyrthosiphon pisum] gi|239788886|dbj|BAH71100.1| ACYPI000138 [Acyrthosiphon pisum]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 114/176 (64%), Gaps = 6/176 (3%)

Query: 174 LAASYSAASAHSNEP------VAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFK 227
           LAA+ S A+    EP      V +   D    R++VGYG NGEP Y D+  FP+PS+RF 
Sbjct: 20  LAANSSTAAVFQAEPKAPVQGVMQVREDKIVGRDIVGYGLNGEPQYFDSITFPFPSVRFM 79

Query: 228 AITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTV 287
             T E+  L+ KEKGDWK L++EEKK LYRASF QT VE++APTGEWK  FG   + +++
Sbjct: 80  KNTPEIVALRVKEKGDWKKLSIEEKKKLYRASFCQTLVEVDAPTGEWKAIFGWVMVWISI 139

Query: 288 SLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 343
           ++ ++V + K         TLS E+RQ  L++MIDLR +PI G +S WDYEKN WK
Sbjct: 140 AVFSFVGVRKFLTSTADDPTLSLEYRQAQLKRMIDLRVDPIDGLSSNWDYEKNTWK 195

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|354549511|gb|AER27812.1| cytochrome c oxidase polypeptide IV [Antheraea yamamai]

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 116/178 (65%), Gaps = 7/178 (3%)

Query: 166 RALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIR 225
           RAL+    + A   A S+   E VAK       +RE VGYG NG+P Y+D   FP P+IR
Sbjct: 8   RALLDAVRVPACTRAGSSSVGE-VAK-----IGDREWVGYGLNGQPNYVDRADFPMPAIR 61

Query: 226 FKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVV 285
           F+A T +++ +++KEKGDW+ LTLEEKK LYRASF QT+ E  APTGEWKG  G   ++ 
Sbjct: 62  FRADTPDIKAIREKEKGDWRKLTLEEKKALYRASFCQTYAEFQAPTGEWKGVLGWGLLIA 121

Query: 286 TVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 343
           + S+  ++ M K+ ++     T  EEH++  L++M+DL+ NP+ G +SKWDYE N WK
Sbjct: 122 SFSVWIFMGM-KMFVYSPLPITFDEEHQKAQLKRMLDLKVNPVDGLSSKWDYENNRWK 178

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308512695|gb|ADO33001.1| cytochrome c oxidase polypeptide IV [Biston betularia]

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 112/165 (67%), Gaps = 5/165 (3%)

Query: 179 SAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQ 238
           S AS+ SN       FD   NRE VG+G+NG P Y+D P FP P++RF+  T +++ L++
Sbjct: 20  SRASSSSN----IGEFDKIGNREWVGFGYNGMPNYVDRPDFPLPAVRFRPDTPDIKVLRE 75

Query: 239 KEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKV 298
           KEK DW+ L+LEEKK LYRASF QTF E  AP+GEWKG  G    + ++S+  Y+ M K+
Sbjct: 76  KEKADWRKLSLEEKKALYRASFCQTFAEFQAPSGEWKGVVGWTLAIASISMWIYMGM-KL 134

Query: 299 GIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 343
            ++    E+LS+E ++  L++M+DL+ NPI G +SKWDYE N WK
Sbjct: 135 FVYSPLPESLSDEAQKAQLKRMLDLKVNPIDGLSSKWDYENNRWK 179

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608841|dbj|BAM18032.1| cytochrome c oxidase subunit iv [Papilio xuthus]

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 105/145 (72%), Gaps = 1/145 (0%)

Query: 199 NREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRA 258
           NRE VGYG+NG+P Y+D P FP P++RF+  T +++ L++KEKGDW+ LTLEEKK LYRA
Sbjct: 31  NREWVGYGYNGQPTYVDRPDFPLPAVRFRPDTPDVKVLREKEKGDWRKLTLEEKKALYRA 90

Query: 259 SFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQ 318
           SF QTF E  APTGEWKG  G + + +++SL  Y+ M K+ ++     +  E+ ++  L+
Sbjct: 91  SFCQTFAEFQAPTGEWKGVVGWSLVFISLSLWIYMGM-KLFVYSPLPASFDEDAQKAQLK 149

Query: 319 KMIDLRWNPITGTASKWDYEKNDWK 343
           +M+DL+ NPI G +SKWDYE N WK
Sbjct: 150 RMLDLKVNPIDGLSSKWDYENNRWK 174

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375004|gb|AEE62643.1| unknown [Dendroctonus ponderosae]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 103/145 (71%), Gaps = 1/145 (0%)

Query: 200 REVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRAS 259
           REVVGYGFNGEP Y+D   FP P+IR+K    ++  L++KEKGDWK L++EEKK LYRAS
Sbjct: 37  REVVGYGFNGEPNYVDRVDFPLPAIRWKEPNADILALREKEKGDWKLLSVEEKKALYRAS 96

Query: 260 FAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQK 319
           F QTF E  APTGEWKG  G+  ++++ +L   +   K  ++P    + S E+R   L++
Sbjct: 97  FRQTFAEFKAPTGEWKGTIGVTLVLISCALWV-IYGLKAFVYPPLPSSFSPENRAAQLRR 155

Query: 320 MIDLRWNPITGTASKWDYEKNDWKK 344
           ++DL+ NPI G +SKWDYEK+DWKK
Sbjct: 156 ILDLQINPIQGISSKWDYEKDDWKK 180

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149287114|gb|ABR23456.1| cytochrome c oxidase polyprotein IV [Ornithodoros parkeri]

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 104/158 (65%), Gaps = 2/158 (1%)

Query: 187 EPVAKEH-FDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWK 245
           +PVA  H       REVVG+G NGE  Y D P FP P+IR+K  T E+E L++KEKGDWK
Sbjct: 23  QPVAAYHGRQRIGKREVVGFGMNGEYTYYDRPDFPMPAIRYKEPTAEIEKLREKEKGDWK 82

Query: 246 NLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKA 305
           NL+L+E+K LYR SF QT+ EMNAP GEWK     A + +  ++  YV + K  ++    
Sbjct: 83  NLSLDERKALYRFSFCQTYAEMNAPRGEWKPTIAGALLCMGFTVWVYVFLKKC-VYGPVP 141

Query: 306 ETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 343
            +LS E ++  LQ+MIDLR NPI G ASKWDYE N WK
Sbjct: 142 SSLSPESKKAQLQRMIDLRVNPIDGIASKWDYENNRWK 179

Source: Ornithodoros parkeri

Species: Ornithodoros parkeri

Genus: Ornithodoros

Family: Argasidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
FB|FBgn0032833	182	CoIV "Cytochrome c oxidase sub	0.447	0.846	0.448	9.5e-34
FB|FBgn0033020	176	CG10396 [Drosophila melanogast	0.418	0.818	0.434	1.3e-31
ZFIN|ZDB-GENE-030131-5175	169	cox4i1 "cytochrome c oxidase s	0.383	0.781	0.426	1.1e-25
UNIPROTKB|Q96KJ9	171	COX4I2 "Cytochrome c oxidase s	0.363	0.730	0.425	7.6e-25
WB|WBGene00012354	175	W09C5.8 [Caenorhabditis elegan	0.412	0.811	0.393	9.7e-25
MGI|MGI:2135755	172	Cox4i2 "cytochrome c oxidase s	0.363	0.726	0.417	9.7e-25
ZFIN|ZDB-GENE-040426-1775	177	cox4i2 "cytochrome c oxidase s	0.409	0.796	0.4	1.6e-24
RGD|69422	172	Cox4i2 "cytochrome c oxidase s	0.363	0.726	0.401	4.2e-24
UNIPROTKB|Q5ZJV5	171	COX4I1 "Uncharacterized protei	0.380	0.766	0.386	1.4e-23
UNIPROTKB|P00423	169	COX4I1 "Cytochrome c oxidase s	0.380	0.775	0.386	1e-22

FB|FBgn0032833 CoIV "Cytochrome c oxidase subunit IV" [Drosophila melanogaster (taxid:7227)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 70/156 (44%), Positives = 96/156 (61%)

Query:   189 VAKEH-FDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNL 247
             VA  H  D    RE+VGYG+NG   Y D   +P P++RF+  T E+  L+ KE+GDWK L
Sbjct:    27 VAAVHTLDKIGKREIVGYGWNGTACYADRVDYPLPAVRFREPTNEINALRAKEQGDWKKL 86

Query:   248 TLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAET 307
             + +E K LYRASF QT  E+ A +GEWK   G++ +    ++   VLM  + ++ E   T
Sbjct:    87 STQEIKALYRASFCQTIAEVQAGSGEWKLHLGVSLLFCAAAIWVAVLM-NIFVYDELPVT 145

Query:   308 LSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 343
               EEH++  LQ++IDL  NP+TG  SKWDYE   WK
Sbjct:   146 FDEEHQKAQLQRIIDLEINPVTGLTSKWDYENKKWK 181

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0008283 "cell proliferation" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=IMP

FB|FBgn0033020 CG10396 [Drosophila melanogaster (taxid:7227)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/145 (43%), Positives = 96/145 (66%)

Query:   199 NREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRA 258
             +R+VVG+G NG P Y D+P  P+P+IR++ ++ EL  L++KE  DWK L+L+EKK LYR 
Sbjct:    33 DRQVVGHGINGRPIYFDSPDCPFPAIRYREVSPELCALREKELDDWKKLSLDEKKQLYRY 92

Query:   259 SFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQ 318
             SF QT+ E    T EWK   G+A  +V++ +   + M K  ++ +  +T ++E +   L+
Sbjct:    93 SFCQTYAEFQHITPEWKMCLGVALWLVSIGIAISITM-KTVLYGKLPDTFNDERQSAQLR 151

Query:   319 KMIDLRWNPITGTASKWDYEKNDWK 343
             ++I L+ NPITG ASKW Y +N WK
Sbjct:   152 RIIQLQMNPITGLASKWCYRENKWK 176

GO:0005739 "mitochondrion" evidence=ISS

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=ISS

ZFIN|ZDB-GENE-030131-5175 cox4i1 "cytochrome c oxidase subunit IV isoform 1" [Danio rerio (taxid:7955)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 58/136 (42%), Positives = 83/136 (61%)

Query:   211 PGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
             P Y D    P P I+F + ++ + + LK+KEKG W  L+ EEK  LYR SF ++F EMN 
Sbjct:    36 PAYFDRRESPLPEIKFVQQLSADQKSLKEKEKGSWAALSKEEKIALYRISFKESFAEMNQ 95

Query:   270 PTGEWKGAF-GIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPI 328
              +GEWK    GI F V    L+  VL  +  ++ +   T   E++Q+ +Q+M+D+R NP+
Sbjct:    96 GSGEWKSVVAGIFFFVGLTGLV--VLWQRKYVYGDVPNTFDPEYKQKEIQRMLDMRINPV 153

Query:   329 TGTASKWDYEKNDWKK 344
              G A+KWDYE N WKK
Sbjct:   154 QGFAAKWDYENNAWKK 169

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IDA

UNIPROTKB|Q96KJ9 COX4I2 "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 54/127 (42%), Positives = 75/127 (59%)

Query:   219 FPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGA 277
             +P P   F   +  E + LK+KEKG W  LT  EK  LYR  F +TF EMN  + EWK  
Sbjct:    46 YPMPEEPFCTELNAEEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKTV 105

Query:   278 FGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDY 337
              G  F  +  + L  +   +V +FP K  TL++E + + LQ+M+D++ NP+ G AS+WDY
Sbjct:   106 MGCVFFFIGFAALV-IWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDY 164

Query:   338 EKNDWKK 344
             EK  WKK
Sbjct:   165 EKKQWKK 171

GO:0004129 "cytochrome-c oxidase activity" evidence=IDA

GO:0045333 "cellular respiration" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IC

GO:0006091 "generation of precursor metabolites and energy" evidence=NAS

WB|WBGene00012354 W09C5.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 57/145 (39%), Positives = 82/145 (56%)

Query:   200 REVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRAS 259
             RE+VGYG NG+  Y D   + YP+IRF+     + P++ KE+ DWKNL+ EEKK LYR S
Sbjct:    33 RELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLLYRYS 92

Query:   260 FAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTY-VLMYKVGIFPEKAETLSEEHRQEMLQ 318
             F QT  E  APTG WK    +   V+   L TY  ++  V ++PE   T   E+++  ++
Sbjct:    93 FRQTLSEFEAPTGYWKVISAVILSVL--GLCTYYAVLLNVCVYPELPPTFQNEYKEAQVE 150

Query:   319 KMIDLRWNPITGTASKWDYEKNDWK 343
             + + L      G  + +DYE   WK
Sbjct:   151 RALVLEKGQFLGAPTHYDYENKKWK 175

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=IMP

MGI|MGI:2135755 Cox4i2 "cytochrome c oxidase subunit IV isoform 2" [Mus musculus (taxid:10090)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 53/127 (41%), Positives = 77/127 (60%)

Query:   219 FPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGA 277
             +P P   F   +++E   LK+KEKG W  L+  EK  LYR  F +TF EMN  + EWK  
Sbjct:    47 YPMPDEPFCTELSEEQRALKEKEKGSWTQLSQAEKVALYRLQFHETFAEMNHRSNEWKTV 106

Query:   278 FGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDY 337
              G  F  +  + L  +   +V +FP+K  TL+EE + + LQ+++D++ NPI G A+ WDY
Sbjct:   107 MGCVFFFIGFTALV-IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDY 165

Query:   338 EKNDWKK 344
             EK +WKK
Sbjct:   166 EKKEWKK 172

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO;ISA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISA

GO:0015992 "proton transport" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0034220 "ion transmembrane transport" evidence=ISA

GO:0055114 "oxidation-reduction process" evidence=ISO;ISA

ZFIN|ZDB-GENE-040426-1775 cox4i2 "cytochrome c oxidase subunit IV isoform 2" [Danio rerio (taxid:7955)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 58/145 (40%), Positives = 82/145 (56%)

Query:   201 EVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEP-LKQKEKGDWKNLTLEEKKTLYRAS 259
             +V+       P Y D    P P   +K I    +  LKQKEKG W NL+ EEK  LYR  
Sbjct:    35 DVIEQADMSRPMYSDRLDTPLPDRPYKDILSAADKSLKQKEKGPWNNLSNEEKIALYRIM 94

Query:   260 FAQTFVEMNAPTGEWKGAF-GIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQ 318
             F +TF EM  PTGEWK    GI F +    L+  VL  ++ ++P +  T  +E + + ++
Sbjct:    95 FNETFAEMKKPTGEWKTVTAGILFFIGFTGLV--VLWQRLYVYPPQPHTFGDEWQAKQIK 152

Query:   319 KMIDLRWNPITGTASKWDYEKNDWK 343
             +M+D++ NP+ G A+KWDYEK  WK
Sbjct:   153 RMLDMKINPVQGFAAKWDYEKGQWK 177

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|69422 Cox4i2 "cytochrome c oxidase subunit IV isoform 2 (lung)" [Rattus norvegicus (taxid:10116)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 51/127 (40%), Positives = 77/127 (60%)

Query:   219 FPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGA 277
             +P P   +   +++E   LK+KEKG W  L+  EK  LYR  F +TF EMN  + EWK  
Sbjct:    47 YPMPDEPYCTELSEEQRALKEKEKGSWAQLSQAEKVALYRLQFHETFAEMNHRSNEWKTV 106

Query:   278 FGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDY 337
              G  F  +  + L  +   +V +FP+K  TL+EE + + LQ+++D++ NPI G ++ WDY
Sbjct:   107 MGCVFFFIGFTALV-IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDY 165

Query:   338 EKNDWKK 344
             EK +WKK
Sbjct:   166 EKKEWKK 172

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=TAS

GO:0008150 "biological_process" evidence=ND

GO:0031966 "mitochondrial membrane" evidence=ISO

UNIPROTKB|Q5ZJV5 COX4I1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   211 PGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
             P Y+D    P P + F K ++ + + LK+KEK  W  L+++EK  LYR  F +++ EMN 
Sbjct:    38 PAYVDRRDVPLPEVAFVKELSAQQKALKEKEKASWTALSVDEKVELYRIKFNESYAEMNK 97

Query:   270 PTGEWKGAFG--IAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
              T EWK   G  + F+ V+  +L +  MY  G  P    T S+E      ++M+D+R NP
Sbjct:    98 GTNEWKTVLGGVLFFLGVSGLILIWQKMYMYGPIPH---TFSDEWLSMQTKRMLDMRINP 154

Query:   328 ITGTASKWDYEKNDWKK 344
             + G +++WDYEKN+WKK
Sbjct:   155 VEGISAQWDYEKNEWKK 171

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|P00423 COX4I1 "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 53/137 (38%), Positives = 78/137 (56%)

Query:   211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
             P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EMN 
Sbjct:    36 PSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR 95

Query:   270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
              T EWK   G A  F+  T  LL +   Y  G  P    T  EE   +  ++M+D++  P
Sbjct:    96 STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPH---TFEEEWVAKQTKRMLDMKVAP 152

Query:   328 ITGTASKWDYEKNDWKK 344
             I G ++KWDY+KN+WKK
Sbjct:   153 IQGFSAKWDYDKNEWKK 169

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IDA

GO:0004129 "cytochrome-c oxidase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.9.3	LOW CONFIDENCE prediction!
3rd Layer	3.5.3	LOW CONFIDENCE prediction!
3rd Layer	1.9.3.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	344
cd00922	136	cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase su	6e-58
pfam02936	142	pfam02936, COX4, Cytochrome c oxidase subunit IV	4e-42
cd00922	136	cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase su	6e-24
pfam02936	142	pfam02936, COX4, Cytochrome c oxidase subunit IV	3e-16
COG1834	267	COG1834, COG1834, N-Dimethylarginine dimethylamino	9e-12
pfam02274	286	pfam02274, Amidinotransf, Amidinotransferase	1e-11

>gnl|CDD|238462 cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase subunit IV

 Score =  183 bits (467), Expect = 6e-58
 Identities = 69/137 (50%), Positives = 92/137 (67%), Gaps = 1/137 (0%)

Query: 201 EVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASF 260
           EVVGYG N  P Y D P  P P IRF+ ++ E++ L++KEKGDWK LTLEEKK LYR SF
Sbjct: 1   EVVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISF 60

Query: 261 AQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKM 320
            +T  EMNAPTGEWK  FG     + ++ + + L     ++  K  T +EE ++  L++M
Sbjct: 61  GETGPEMNAPTGEWKTVFGGVLAFIGITGVIFGLQRAF-VYGPKPHTFTEEWQEAQLERM 119

Query: 321 IDLRWNPITGTASKWDY 337
           +D++ NPITG ASKWDY
Sbjct: 120 LDMKVNPITGYASKWDY 136

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform. Length = 136

>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV

 Score =  142 bits (361), Expect = 4e-42
 Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 1/143 (0%)

Query: 201 EVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASF 260
            VVGYG NG P Y D P    P  RF+  ++ +  L++KEKGDWK+L+LEEKK LYR SF
Sbjct: 1   RVVGYGANGNPTYADLPDRWEPMPRFREQSELIMALREKEKGDWKSLSLEEKKALYRISF 60

Query: 261 AQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKM 320
            +T  E  AP GEWK   G     + +S   ++LM +   +P   +T+++E ++   ++M
Sbjct: 61  GETGPEFVAPKGEWKTVLGGVLAGLGISFGLFILM-RTFAYPPLPKTMNKEWQEAQNERM 119

Query: 321 IDLRWNPITGTASKWDYEKNDWK 343
            DL+ NPITG AS +DYE   WK
Sbjct: 120 KDLKINPITGLASGYDYENKVWK 142

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The yeast protein MTC3 appears to be the yeast COX IV subunit. Length = 142

>gnl|CDD|238462 cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase subunit IV

 Score = 95.0 bits (237), Expect = 6e-24
 Identities = 33/68 (48%), Positives = 41/68 (60%)

Query: 34  PLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVL 93
            L++KEKGDWK LTLEEKK LYR SF +T  EMNA TGEWK  FG     + ++ + + L
Sbjct: 35  ALREKEKGDWKQLTLEEKKALYRISFGETGPEMNAPTGEWKTVFGGVLAFIGITGVIFGL 94

Query: 94  MYKVGIDE 101
                   
Sbjct: 95  QRAFVYGP 102

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform. Length = 136

>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 34 PLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVL 93
           L++KEKGDWK+L+LEEKK LYR SF +T  E  A  GEWK   G     + +S   ++L
Sbjct: 35 ALREKEKGDWKSLSLEEKKALYRISFGETGPEFVAPKGEWKTVLGGVLAGLGISFGLFIL 94

Query: 94 M 94
          M
Sbjct: 95 M 95

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The yeast protein MTC3 appears to be the yeast COX IV subunit. Length = 142

>gnl|CDD|224747 COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 97  VGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQR 156
             I+ A  QHE+ V  L   G++V  LPP E LP+ VF  D  ++     ++ + G  +R
Sbjct: 31  PQIERAVAQHEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPER 90

Query: 157 HKEVAV 162
             E   
Sbjct: 91  RGEEEA 96

Length = 267

>gnl|CDD|216956 pfam02274, Amidinotransf, Amidinotransferase

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 100 DEARRQHESFVALLRDLGLDVIELPPD--EDLPESVFIEDTAVIVNGIVLITKPGNTQRH 157
           + A+++H++FVA LR  G++V+ L       LP+SVF  D    + G V+I       R 
Sbjct: 28  ERAQKEHDAFVAKLRANGVEVLVLEDLLAPPLPDSVFPNDWFSTIGGGVVIYPMFAPNRR 87

Query: 158 KEV 160
           +E 
Sbjct: 88  RER 90

This family contains glycine (EC:2.1.4.1) and inosamine (EC:2.1.4.2) amidinotransferases, enzymes involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, EC:3.5.3.6. These enzymes catalyze the reaction: arginine + H2O <=> citrulline + NH3. Also found in this family is the Streptococcus anti tumour glycoprotein. Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF02936	142	COX4: Cytochrome c oxidase subunit IV; InterPro: I	100.0
KOG4075|consensus	167		100.0
cd00922	136	Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV.	100.0
COG1834	267	N-Dimethylarginine dimethylaminohydrolase [Amino a	99.95
KOG4075|consensus	167		99.89
PF02274	281	Amidinotransf: Amidinotransferase; InterPro: IPR00	99.86
cd00922	136	Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV.	99.83
PF02936	142	COX4: Cytochrome c oxidase subunit IV; InterPro: I	99.83
TIGR01078	405	arcA arginine deiminase. Arginine deiminase is the	99.71
PRK01388	406	arginine deiminase; Provisional	99.68
COG4874	318	Uncharacterized protein conserved in bacteria cont	98.56
COG2235	409	ArcA Arginine deiminase [Amino acid transport and	98.48

>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1

Probab=100.00  E-value=2.8e-51  Score=356.88  Aligned_cols=142  Identities=50%  Similarity=0.867  Sum_probs=113.5

Q ss_pred             EEEeeeccCCCcccCCCCCCCCCccccccccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcchhhHHHH
Q psy945          201 EVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGI  280 (344)
Q Consensus       201 ~~VG~G~rt~p~y~d~~d~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e~k~vfg~  280 (344)
                      ++||+|.+|.|.|+|++++|+|++||.++++++++|++||||||++||+|||+|+||+|||+||||+..++++|+.|||+
T Consensus         1 ~~v~~~~~s~p~y~d~~~~w~p~~~~~~~~~~~~~LkeKekg~Wk~LS~eEKkalY~isFg~~g~r~~~~~gewk~v~~~   80 (142)
T PF02936_consen    1 EVVGYGANSNPSYVDREDRWLPMPRFQEQTEIIEALKEKEKGDWKKLSLEEKKALYRISFGQTGPRMKAPTGEWKKVFGG   80 (142)
T ss_dssp             ----GGGTTS-----BTTBSS-SS---S--HHHHHHHHHTTS-GGGS-HHHHHHHHHHH-SS-HHHHT---SHHHHHHHH
T ss_pred             CccccccCCCCcccchhcCCCCCcchhhhHHHHHHHHHHHhCCHhhCCHHHHHHHHHhhhcCcccccccCCcchHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCcccccccccccCccC
Q psy945          281 AFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK  343 (344)
Q Consensus       281 ~~v~ig~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY~~~~wk  343 (344)
                      +++++|+++++|.++|.+ +|+|+|+|||+|||+||+||||+|++|||+|+||+|||+||+||
T Consensus        81 ~~~~i~~s~~l~~~~r~~-~~~~~P~T~~~Ew~ea~~~~m~~~~~nPi~G~ss~wdy~~~~wk  142 (142)
T PF02936_consen   81 VFIFIGFSVLLFIWQRSY-VYPPLPHTFSKEWQEAQNERMLDMKVNPITGFSSKWDYEKNEWK  142 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHH-T-----GGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEE-
T ss_pred             HHHHHHHHHHHHHHHHHH-hCCCCCCCcCHHHHHHHHHHHHHcCCCCCCCCcCCcCCCCCcCC
Confidence            999999999999999999 89999999999999999999999999999999999999999998

9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....

>KOG4075|consensus

Probab=100.00  E-value=2e-49  Score=347.68  Aligned_cols=148  Identities=42%  Similarity=0.797  Sum_probs=145.0

Q ss_pred             cCCCCeEEEeeeccCCCcccCCCCCCCCCccccccccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcch
Q psy945          195 DFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEW  274 (344)
Q Consensus       195 ~~ig~r~~VG~G~rt~p~y~d~~d~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e~  274 (344)
                      .++..+.+||+|.++.|.|.|++++|+|.+||.|++.++++|+||||+||++||.|||||+||+|||||++|+++++++|
T Consensus        20 ~~~a~~~~vg~~~~~~p~y~Drrd~pmP~~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ew   99 (167)
T KOG4075|consen   20 DKAAKRQLVGYGDNGLPIYLDRRDYPMPAIRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEW   99 (167)
T ss_pred             hhhhcccccccccccCchhhccccCCCcchhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcc
Confidence            35688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCcccccccccccCccC
Q psy945          275 KGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK  343 (344)
Q Consensus       275 k~vfg~~~v~ig~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY~~~~wk  343 (344)
                      |.|||+.++++|++.++.+|++.+ +|+|.|+||++|||+||+|||||+++|||+|++|+||||+|+||
T Consensus       100 Ktv~g~~~~f~Gl~~~v~l~~~v~-vy~~~P~Tf~~Ewq~kq~erml~~~~NPi~Glas~wdye~k~wK  167 (167)
T KOG4075|consen  100 KTVFGVAGFFLGLTISVILFGKVR-VYGPLPKTFNKEWQEKQLERMLDLKINPIGGLASKWDYEEKKWK  167 (167)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhhe-ecCCCCcchhHHHHHHHHHHHHHcccCCccCcccccChhhhccC
Confidence            999999999999999999999999 99999999999999999999999999999999999999999998

>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV

Probab=100.00  E-value=1.1e-46  Score=325.88  Aligned_cols=135  Identities=50%  Similarity=0.876  Sum_probs=133.4

Q ss_pred             EEeeeccCCCcccCCCCCCCCCccccccccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcchhhHHHHH
Q psy945          202 VVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIA  281 (344)
Q Consensus       202 ~VG~G~rt~p~y~d~~d~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e~k~vfg~~  281 (344)
                      +||+|.++.|.|+|++++|+|+|||.++++++++|++||||||++||++||||+||+|||+|+||++++++|||.|||++
T Consensus         2 ~~~~~~~s~p~y~d~~~~p~p~~~~~e~~~~~~~Lrekek~dW~~LT~~EKkAlY~isfg~~~~e~~~~~~ewk~v~~~~   81 (136)
T cd00922           2 VVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISFGETGPEMNAPTGEWKTVFGGV   81 (136)
T ss_pred             cccccccCCccccCCCCCCCCcCccccchHHHHHHHHHhhCCHhhCCHHHHhhHhhhhhccccccccCCCccHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCccccccccc
Q psy945          282 FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDY  337 (344)
Q Consensus       282 ~v~ig~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY  337 (344)
                      ++++|+++++|+++|.+ +|+|.|+||++|||+||+|||+++|+|||||+||+|||
T Consensus        82 ~~~i~~s~~~~~~~r~~-~~~~~P~T~t~Ewqea~~er~~~~~~NPitG~ss~~dy  136 (136)
T cd00922          82 LAFIGITGVIFGLQRAF-VYGPKPHTFTEEWQEAQLERMLDMKVNPITGYASKWDY  136 (136)
T ss_pred             HHHHHHHHHHHHHHHHh-ccCCCCCCcCHHHHHHHHHHHHHhCCCCCcccccCCcC
Confidence            99999999999999999 89999999999999999999999999999999999998

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.

>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]

Probab=99.95  E-value=1e-29  Score=240.64  Aligned_cols=211  Identities=18%  Similarity=0.208  Sum_probs=169.7

Q ss_pred             eeeeEEeeccc---ccCh--HHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCceecCCceEEECCeEEEeCCCCccCcCh
Q psy945           85 TVSLLTYVLMY---KVGI--DEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKE  159 (344)
Q Consensus        85 ~vs~lin~~M~---~vD~--d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E  159 (344)
                      .+.+.+|+||+   ..++  +.|++||++|+++|+++||+|++++|.+++||+||++|+++|++.+||++||+++.|++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~e~A~aQh~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE   93 (267)
T COG1834          14 LVDYVINPWMKGLGEEDPQIERAVAQHEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGE   93 (267)
T ss_pred             HhhhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHCCCEEEEcCcccCCCcceEeccceeEecccEEEeccCChhhccC
Confidence            46678898888   3344  489999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhcc-cccccccccccccCCCCcccccccCC-CCeEEEeeeccCCCcccCCCC----------CCCCCcccc
Q psy945          160 VAVSATRALIKP-KSLAASYSAASAHSNEPVAKEHFDFF-PNREVVGYGFNGEPGYIDNPM----------FPYPSIRFK  227 (344)
Q Consensus       160 ~~~~~t~~~~~l-~~~~i~~~~~~~~~~eG~~~~~~~~i-g~r~~VG~G~rt~p~y~d~~d----------~pLpd~rf~  227 (344)
                      ...+.  .|++. +.+.+. +..+. ..+|  .||++.. |+++++|+|+||+...+....          .-.-+.+|+
T Consensus        94 ~~~~~--~~~~~lgi~i~~-~~~~~-~~eG--~GD~l~~~~~~v~iG~s~RTn~egi~~l~~~L~~~~~v~~~~~~~~~l  167 (267)
T COG1834          94 EEAIK--ETLESLGIPIYP-RVEAG-VFEG--AGDVLMDGGDTVYIGYSFRTNLEGIEQLQAWLEEGYEVSLVRLDERYL  167 (267)
T ss_pred             HHHHH--HHHHHcCCcccc-cccCC-Cccc--cccEEEeCCcEEEEEeccccchHHHHHHHHHhccCcEEEEEecCCcee
Confidence            99987  67772 222222 22333 3344  4577777 777899999999999883221          225578899


Q ss_pred             ccccccccccccccCCCcCCChHHHHhhchhhccccccCC--------cCCCcchhhHHHHHHHHHHHHHHH-------H
Q psy945          228 AITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEM--------NAPTGEWKGAFGIAFMVVTVSLLT-------Y  292 (344)
Q Consensus       228 ~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~--------~~~~~e~k~vfg~~~v~ig~~~~~-------~  292 (344)
                      |+|++++.|++.            ...+|+.+|++.++++        +..+.++...++||.+.+|...++       .
T Consensus       168 HLdt~~~~l~e~------------~al~y~~~~~~~~~~~lk~r~~~~I~Vpe~e~~~l~~n~v~~g~~~v~~~~~~~~~  235 (267)
T COG1834         168 HLDTVFNPLAEG------------LALAYPPAFSEGANDVLKERGFELIEVPEEEAFALGCNVVSLGPNVVIALPRTPKA  235 (267)
T ss_pred             ehhheeeeccCc------------ceeecchhcchhHHHHHhhCCceEEecCHhHhhhhccceeecCCceeecCcccchH
Confidence            999999999976            6889999999744432        346677788899999999877555       4


Q ss_pred             HHHHHhccCCCCCCCCcHHHHH
Q psy945          293 VLMYKVGIFPEKAETLSEEHRQ  314 (344)
Q Consensus       293 ~~~r~~~~~~p~P~tlseewk~  314 (344)
                      ..++.. ||..+|.+++|..|.
T Consensus       236 e~L~~~-GfeVi~~~~~ei~k~  256 (267)
T COG1834         236 EQLAAA-GFEVIEVDLTEILKG  256 (267)
T ss_pred             HHHHhC-CceEEecCHHHHHHc
Confidence            677888 999999999988764

>KOG4075|consensus

Probab=99.89  E-value=6.8e-25  Score=193.08  Aligned_cols=82  Identities=32%  Similarity=0.507  Sum_probs=75.5

Q ss_pred             cCCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeeccc----ccChHHHHH
Q psy945           29 HSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMY----KVGIDEARR  104 (344)
Q Consensus        29 ~~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~----~vD~d~A~~  104 (344)
                      .+++++||||||+||++||.|||++||||||||||+|||+++||||+|+|++++|+|+++++-.||+    +++.....+
T Consensus        55 ~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~vy~~~P~Tf~~  134 (167)
T KOG4075|consen   55 SAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVRVYGPLPKTFNK  134 (167)
T ss_pred             cHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhheecCCCCcchhH
Confidence            4578999999999999999999999999999999999999999999999999999999999999988    567778888


Q ss_pred             HHHHHH
Q psy945          105 QHESFV  110 (344)
Q Consensus       105 Qh~~lv  110 (344)
                      ||+.-.
T Consensus       135 Ewq~kq  140 (167)
T KOG4075|consen  135 EWQEKQ  140 (167)
T ss_pred             HHHHHH
Confidence            887643

>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively

Probab=99.86  E-value=1.1e-23  Score=199.63  Aligned_cols=200  Identities=22%  Similarity=0.250  Sum_probs=141.3

Q ss_pred             cccChHHHHHHHHHHHHHHHHCCCeEEEeCCC--CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcc-
Q psy945           95 YKVGIDEARRQHESFVALLRDLGLDVIELPPD--EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKP-  171 (344)
Q Consensus        95 ~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~--~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l-  171 (344)
                      +++|+++|++||++|+++|+++|++|+.+++.  +++||+||++|+++++++++|++||+.++||+|...+.  .+++. 
T Consensus        23 ~~~~~~~a~~e~~~l~~~L~~~Gv~V~~~~~~~~~~~p~~vF~rD~~~~~~~~~ii~~m~~~~R~~E~~~~~--~~~~~~  100 (281)
T PF02274_consen   23 DPPDPEKAREEHDALVEALRSNGVEVIELPPLLEEPLPDMVFTRDPGVVIGGGVIIGRMRAPSRRGEEDVYK--EIFEKH  100 (281)
T ss_dssp             S---HHHHHHHHHHHHHHHHTTT-EEEEEHHHHHTT-TTTT-TTCCEEEECTEEEE-B-SSGGGHGHHHHHH--HHHHHS
T ss_pred             CcchHHHHHHHHHHHHHHHHhCCcEEEEeCCccCCCCCCeEEcCCcEEEEcCCEEEeCCChHHhcCcchHHH--HHHHhh
Confidence            48999999999999999999999999999999  99999999999999999999999999999999999977  56653 


Q ss_pred             --cc---cccc-cccccccCCCCcccccccCCCCeEEE-eeeccCCCcccC------CCC---------CCCCCcccccc
Q psy945          172 --KS---LAAS-YSAASAHSNEPVAKEHFDFFPNREVV-GYGFNGEPGYID------NPM---------FPYPSIRFKAI  229 (344)
Q Consensus       172 --~~---~~i~-~~~~~~~~~eG~~~~~~~~ig~r~~V-G~G~rt~p~y~d------~~d---------~pLpd~rf~~~  229 (344)
                        ..   ..+. ....+++.+||    |++.+++..++ |+|.||++..++      ...         .-..++.++|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~lEGG----Dv~~~~~~~~v~G~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HL  176 (281)
T PF02274_consen  101 PFNIPRVLDIEEENGDPGYLEGG----DVLVLGDNVLVIGVGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHL  176 (281)
T ss_dssp             CCCTCCEEEEEEC--TTS-B-GG----GEEEESTEEEEEEESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSG
T ss_pred             ccccceeeCCccccccCceecCc----EEEEECCEEEEEeecCCCCHHHHHHHHHHhcccccccccceeeccCccCcccc
Confidence              11   1121 11246778888    55555666654 999999999883      111         12446788999


Q ss_pred             ccccccccccccCCCcCCChHHHHhhchhhcccc------------ccCCcCCCcchhhHHHHHHHHHHH--------HH
Q psy945          230 TKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQT------------FVEMNAPTGEWKGAFGIAFMVVTV--------SL  289 (344)
Q Consensus       230 ~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~------------~pe~~~~~~e~k~vfg~~~v~ig~--------~~  289 (344)
                      |+.++.|++.            ...+|+..|++.            +-+.+..+.+....+++|++.+|=        ..
T Consensus       177 D~~~~~l~~~------------~~l~~~~~~~~~~~~~l~~~l~~~~~~iI~v~~~e~~~~~~N~l~l~~~~vi~~~~~~  244 (281)
T PF02274_consen  177 DTVFNPLDPD------------LVLVYPDAFDPEEEEELEQALKERGFEIIEVPEEEQWNFACNVLSLGPGKVIAYASNP  244 (281)
T ss_dssp             GGTEEEEETT------------EEEEECCHHCTHHHHHHHHHHSSSTCEEEEESSCSCSGGGGS-EEECTTEEEEETTHH
T ss_pred             ceEEEEcCCC------------EEEEeCcccchHHHHHHHHHhcccCcEEEEeccchhhhccCCEEEecCCEEEECCCCH
Confidence            9999999965            456677766543            334455667777799999988872        23


Q ss_pred             HHHHHHHHhccCCCCCCCCcHHHH
Q psy945          290 LTYVLMYKVGIFPEKAETLSEEHR  313 (344)
Q Consensus       290 ~~~~~~r~~~~~~p~P~tlseewk  313 (344)
                      -+...++.. |+..++.+++|.-|
T Consensus       245 ~~~~~L~~~-G~~v~~v~~~el~k  267 (281)
T PF02274_consen  245 RTNEQLEKA-GIEVIEVDFSELEK  267 (281)
T ss_dssp             HHHHHHHHT-T-EEEEE-HHHHHT
T ss_pred             HHHHHHHhc-CCeEEEEcHHHhhc
Confidence            346677888 89999999987654

This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....

>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV

Probab=99.83  E-value=1.6e-22  Score=175.38  Aligned_cols=79  Identities=42%  Similarity=0.632  Sum_probs=69.8

Q ss_pred             CCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeecccc----cChHHHHHH
Q psy945           30 SNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYK----VGIDEARRQ  105 (344)
Q Consensus        30 ~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~~----vD~d~A~~Q  105 (344)
                      .++.+|||||||||++||.+|||+|||+|||||++||++++||||+|+|+++++++|++++..++..    +-....-.|
T Consensus        31 ~~~~~Lrekek~dW~~LT~~EKkAlY~isfg~~~~e~~~~~~ewk~v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~t~E  110 (136)
T cd00922          31 AEIKALREKEKGDWKQLTLEEKKALYRISFGETGPEMNAPTGEWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTEE  110 (136)
T ss_pred             HHHHHHHHHhhCCHhhCCHHHHhhHhhhhhccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999883    234445556


Q ss_pred             HHH
Q psy945          106 HES  108 (344)
Q Consensus       106 h~~  108 (344)
                      |++
T Consensus       111 wqe  113 (136)
T cd00922         111 WQE  113 (136)
T ss_pred             HHH
Confidence            654

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.

>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1

Probab=99.83  E-value=1.7e-22  Score=176.37  Aligned_cols=82  Identities=41%  Similarity=0.617  Sum_probs=63.5

Q ss_pred             ccCCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeecccc----cChHHHH
Q psy945           28 AHSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYK----VGIDEAR  103 (344)
Q Consensus        28 ~~~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~~----vD~d~A~  103 (344)
                      ....+++|||||||||++||+|||++|||||||||++||++++||||+|+|++|++++++.++..|++.    +.....-
T Consensus        29 ~~~~~~~LkeKekg~Wk~LS~eEKkalY~isFg~~g~r~~~~~gewk~v~~~~~~~i~~s~~l~~~~r~~~~~~~P~T~~  108 (142)
T PF02936_consen   29 QTEIIEALKEKEKGDWKKLSLEEKKALYRISFGQTGPRMKAPTGEWKKVFGGVFIFIGFSVLLFIWQRSYVYPPLPHTFS  108 (142)
T ss_dssp             --HHHHHHHHHTTS-GGGS-HHHHHHHHHHH-SS-HHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-----GGGS
T ss_pred             hHHHHHHHHHHHhCCHhhCCHHHHHHHHHhhhcCcccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcC
Confidence            456789999999999999999999999999999999999999999999999999999999999999982    2244455


Q ss_pred             HHHHHH
Q psy945          104 RQHESF  109 (344)
Q Consensus       104 ~Qh~~l  109 (344)
                      +||++-
T Consensus       109 ~Ew~ea  114 (142)
T PF02936_consen  109 KEWQEA  114 (142)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....

>TIGR01078 arcA arginine deiminase

Probab=99.71  E-value=1.3e-17  Score=167.52  Aligned_cols=152  Identities=16%  Similarity=0.197  Sum_probs=120.8

Q ss_pred             ccccChHHHHHHHHHHHHHHHHCCCeEEEeCCC-----------------------------------------------
Q psy945           94 MYKVGIDEARRQHESFVALLRDLGLDVIELPPD-----------------------------------------------  126 (344)
Q Consensus        94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~-----------------------------------------------  126 (344)
                      -+.++.++|++||+.|+++||++||+|+.|+..                                               
T Consensus        34 d~i~~~~~a~~EHd~f~~~Lr~~GveV~~l~dll~e~l~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  113 (405)
T TIGR01078        34 DDIPWVEDAQKEHDQFANTLRDNGIEVLYLEDLLAETLDLPEAKEKFIDEFLSESEILGLGLKVELRDYLKSLDTRELVE  113 (405)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHCCCEEEEhHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhCCHHHHHH
Confidence            347899999999999999999999999988621                                               


Q ss_pred             ----------------------------------CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhc--
Q psy945          127 ----------------------------------EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIK--  170 (344)
Q Consensus       127 ----------------------------------~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~--  170 (344)
                                                        +.+||++|+||.+++++++++|++|+.+.||+|...++  .+++  
T Consensus       114 ~li~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~i~PlpN~vFtRD~~~vi~~g~vi~~m~~~~Rr~E~~~~~--~i~~~h  191 (405)
T TIGR01078       114 KLMAGVAKNELPASEGSEKSLMDLGVEGDSDFVIDPMPNLYFTRDPFASIGNGVTINPMYYKARQRETLFTR--AIFKHH  191 (405)
T ss_pred             HHHcCCCHHHcCcccccchhhHHHhccCCCceeccCCCCcEeccCceEEECCeEEEeCCCchhhCCcHHHHH--HHHHhC
Confidence                                              35899999999999999999999999999999999977  4544  


Q ss_pred             -----ccccccccccccccCCCCcccccccCCCC-eEEEeeeccCCCcccC--------C-----CC--CCCCCcc-ccc
Q psy945          171 -----PKSLAASYSAASAHSNEPVAKEHFDFFPN-REVVGYGFNGEPGYID--------N-----PM--FPYPSIR-FKA  228 (344)
Q Consensus       171 -----l~~~~i~~~~~~~~~~eG~~~~~~~~ig~-r~~VG~G~rt~p~y~d--------~-----~d--~pLpd~r-f~~  228 (344)
                           .+.+.+.....+++.+||    |++.+++ .++||+|.||++....        .     ..  +++|..| |.|
T Consensus       192 p~f~~~g~~i~~~~~~~~~iEGG----Dvl~l~~~~l~IG~s~RTn~~gie~La~~L~~~~~~~~~Vi~v~ip~~r~~mH  267 (405)
T TIGR01078       192 PRFANTEFPIWYDRSETASIEGG----DVLVLNKDVLAIGISERTSAQSVEKLAKSLFANKGGFKKVLAINIPKNRALMH  267 (405)
T ss_pred             chhhccCCcEEecCCCCCccccc----eEEEECCCEEEEEecccCCHHHHHHHHHHhhhccCCCCEEEEEEcCCCCCccc
Confidence                 122333323356778888    5556664 4599999999998873        1     11  5577776 889


Q ss_pred             cccccccccccccCCCcCCChHHHHhhchhhcccc
Q psy945          229 ITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQT  263 (344)
Q Consensus       229 ~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~  263 (344)
                      +|+.++.+++.            +..+|+..|+..
T Consensus       268 LDtvft~vd~d------------~~l~~p~~~~~~  290 (405)
T TIGR01078       268 LDTVFTMVDYD------------KFTVFPEVVDVL  290 (405)
T ss_pred             CCccccccCCC------------eEEEchhHhccc
Confidence            99999999965            677888888654

Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.

>PRK01388 arginine deiminase; Provisional

Probab=99.68  E-value=3.8e-17  Score=164.26  Aligned_cols=140  Identities=20%  Similarity=0.285  Sum_probs=111.3

Q ss_pred             ccccChHHHHHHHHHHHHHHHHCCCeEEEeCCC-----------------------------------------------
Q psy945           94 MYKVGIDEARRQHESFVALLRDLGLDVIELPPD-----------------------------------------------  126 (344)
Q Consensus        94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~-----------------------------------------------  126 (344)
                      -+.++.++|++||+.|+++||++|++|++|+..                                               
T Consensus        41 ddi~~l~~aq~EHd~f~~~Lr~~GveV~~l~dll~e~l~~~~~r~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~  120 (406)
T PRK01388         41 DDVPWVERAQKEHDAFAQTLRDRGVEVLYLEDLLAETLANPEAREWFLDRQISEARVGLGLADELRAYLESLDNRELAEK  120 (406)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHCCCEEEEhHHHHHHHhcCHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhCCHHHHHHH
Confidence            347899999999999999999999999998732                                               


Q ss_pred             ------------------------------CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhc--c---
Q psy945          127 ------------------------------EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIK--P---  171 (344)
Q Consensus       127 ------------------------------~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~--l---  171 (344)
                                                    +.+||++|+||.+++++++++|+||+.+.||+|...++  .+++  +   
T Consensus       121 ~i~g~~~~el~~~~~~~l~~~~~~~~~f~~~PlpN~vFtRD~~~~i~~g~ii~~m~~~~Rr~E~~~~~--~i~~~hp~f~  198 (406)
T PRK01388        121 LIGGVAKSELPESKAKSLVRLMHDPYDFVLDPLPNLLFTRDPSAWIGGGVTINPMAWPARRRETLLTE--AIYKHHPRFA  198 (406)
T ss_pred             HHcCCcHHHcccccchhHHHHhhcCCccccCCCCCeEeccCcEEEECCEEEEeCCCChhhCccHHHHH--HHHHhCcccc
Confidence                                          35899999999999999999999999999999999876  4443  1   


Q ss_pred             --cccccccccccccCCCCcccccccCCCCe-EEEeeeccCCCcccCCC------------C--CCCCCcc-cccccccc
Q psy945          172 --KSLAASYSAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYIDNP------------M--FPYPSIR-FKAITKEL  233 (344)
Q Consensus       172 --~~~~i~~~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d~~------------d--~pLpd~r-f~~~~~~l  233 (344)
                        +.+.+.....+++.+||    |++.+++. ++||+|.||++...+..            .  +++|..| |.|||+.+
T Consensus       199 ~~~~~i~~~~~~~~~iEGG----Dvl~l~~~~l~IG~s~RTn~~gie~La~~l~~~~~~~~Vi~v~ip~~r~~mHLDtvf  274 (406)
T PRK01388        199 GADVPVWDDRHGNATLEGG----DVLVLGKGVVAIGMSERTSPQAIEQLARSLFKKGAAKRVLAVEIPKSRAFMHLDTVF  274 (406)
T ss_pred             cCCceEEecCCCCCCCccc----eEEEECCCEEEEEecccCCHHHHHHHHHHHhhcCCCcEEEEEeccCCCCceeCCccc
Confidence              12222222367788888    66666764 69999999999887311            1  4467665 88999999


Q ss_pred             cccccc
Q psy945          234 EPLKQK  239 (344)
Q Consensus       234 ~~L~ek  239 (344)
                      +.+++.
T Consensus       275 t~vd~d  280 (406)
T PRK01388        275 TMVDYD  280 (406)
T ss_pred             cccCCC
Confidence            999965

>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]

Probab=98.56  E-value=1.1e-07  Score=89.64  Aligned_cols=64  Identities=23%  Similarity=0.322  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHCCCeEEEeCC--CCCCCCceecCCceEEEC-CeEEEeCCCCccCcChhhh
Q psy945           99 IDEARRQHESFVALLRDLGLDVIELPP--DEDLPESVFIEDTAVIVN-GIVLITKPGNTQRHKEVAV  162 (344)
Q Consensus        99 ~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~--~~~~PD~VF~~D~a~v~~-~~avi~r~~~~~Rr~E~~~  162 (344)
                      .+.|..|++++++-|++.||+|++++.  .++.||+||++||+.++. |.+++++|..++||.|...
T Consensus        52 ~q~A~~Ef~amve~L~~~GvdV~ifddtg~~~TPDsvFPNNWFSTh~~g~v~LyPM~~~nRRlER~~  118 (318)
T COG4874          52 LQRAMSEFNAMVEGLRQAGVDVVIFDDTGQGETPDSVFPNNWFSTHEAGEVFLYPMACANRRLERPE  118 (318)
T ss_pred             HHHHHHHHHHHHHHHHhcCceEEEeecCCCCCCCcccCCCcccccCcCCeEEEeeccCccccccchH
Confidence            678999999999999999999999996  567899999999999997 6699999999999999876

>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism]

Probab=98.48  E-value=4.4e-07  Score=91.20  Aligned_cols=138  Identities=17%  Similarity=0.239  Sum_probs=104.3

Q ss_pred             ccChHHHHHHHHHHHHHHHHCCCeEEEeCC--------C-----------------------------------------
Q psy945           96 KVGIDEARRQHESFVALLRDLGLDVIELPP--------D-----------------------------------------  126 (344)
Q Consensus        96 ~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~--------~-----------------------------------------  126 (344)
                      .+..+.|+++|+.|+++||+.|++|++|+.        .                                         
T Consensus        42 v~~l~~AqkEH~~f~~~Lr~~gveV~~L~dll~e~l~~~~~~r~~fl~~~i~~~~~~~~~~~~~~r~~l~~l~~~~~l~~  121 (409)
T COG2235          42 VPYLEKAQKEHDTFAQILREQGIEVLYLEDLLAETLDKANAARNQFIETYLDEAEIKGTGTADEVRAYLLSLDKNKELIS  121 (409)
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCeEEEeHHHHHHHhccCHHHHHHHHHHHhhhcccccccHHHHHHHHHHhcCchHHHHH
Confidence            567899999999999999999999998751        0                                         


Q ss_pred             --------------------------------CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhccccc
Q psy945          127 --------------------------------EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKSL  174 (344)
Q Consensus       127 --------------------------------~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~~~  174 (344)
                                                      +.+|+..|+||...++++|++|++|..+.|++|....+.-.-+++.-.
T Consensus       122 ~l~~G~~~~e~p~~~~~~~~~~~~~~~~~f~~~PLpNlyFtRD~~~~i~~GV~in~M~~~aR~rEt~i~~~i~~~hp~f~  201 (409)
T COG2235         122 VLISGMGKIDLPEIDAKNSLEDRATINSDFLIDPLPNLYFTRDPFASIGNGVSINRMKYPARRRETLIAEFILKFHPIFA  201 (409)
T ss_pred             HHhhceeecccCCccccccchhhccCCCceeccCCcccccccCCceEeeCCEEecccchhhhhhHHHHHHHHHHhCcccc
Confidence                                            126889999999999999999999999999999988653222333333


Q ss_pred             c---cccccccccCCCCcccccccCCC-CeEEEeeeccCCCcccC---------C------CCCCCCC-ccccccccccc
Q psy945          175 A---ASYSAASAHSNEPVAKEHFDFFP-NREVVGYGFNGEPGYID---------N------PMFPYPS-IRFKAITKELE  234 (344)
Q Consensus       175 ~---i~~~~~~~~~~eG~~~~~~~~ig-~r~~VG~G~rt~p~y~d---------~------~d~pLpd-~rf~~~~~~l~  234 (344)
                      +   +.......+.+||    |++.++ +..++|.|-||++..+.         .      ..+.+|- --+-||||.+.
T Consensus       202 ~~~~~~~~~~~~~iEGG----D~~~~g~~~~lIGvseRT~~~~ie~La~~lf~~~~~~~~v~a~~~~k~ra~MHLDTvFt  277 (409)
T COG2235         202 GVPIWFGRDDKATIEGG----DFLPLGKDVVLIGVSERTDWGAVEALAKLLFKDDVGFKRVIAIEIPKNRAFMHLDTVFT  277 (409)
T ss_pred             CCeeecCCCccceecCc----ceEEecCceEEEEecccCCHHHHHHHHHHhhcCCcceeEEeeeecccchhhhchheeee
Confidence            3   1112244778888    566667 77899999999998882         1      1144665 33459999998


Q ss_pred             ccc
Q psy945          235 PLK  237 (344)
Q Consensus       235 ~L~  237 (344)
                      -.+
T Consensus       278 ~vd  280 (409)
T COG2235         278 MVD  280 (409)
T ss_pred             eec
Confidence            877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	344
2y69_D	169	Bovine Heart Cytochrome C Oxidase Re-Refined With M		2e-21
1occ_D	147	Structure Of Bovine Heart Cytochrome C Oxidase At T		3e-21
3i2e_A	308	Crystal Structure Of Human Dimethylarginine Dymethy		7e-12
3p8p_A	308	Crystal Structure Of Human Dimethylarginine Dimethy		7e-12
2jaj_A	289	Ddah1 Complexed With L-257 Length = 289		7e-12
2jai_A	289	Ddah1 Complexed With Citrulline Length = 289		9e-12
2c6z_A	284	Crystal Structure Of Dimethylarginine Dimethylamino		1e-10
3bpb_A	254	Crystal Structure Of The Dimethylarginine Dimethyla		2e-07
1h70_A	255	Ddah From Pseudomonas Aeruginosa. C249s Mutant Comp		2e-07
3rhy_A	254	Crystal Structure Of The Dimethylarginine Dimethyla		2e-07
2ci1_A	276	Crystal Structure Of Dimethylarginine Dimethylamino		3e-05

>pdb|2Y69|D Chain D, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EMN 
Sbjct: 36  PSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR 95
Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
            T EWK   G A  F+  T  LL +   Y  G  P    T  EE   +  ++M+D++  P
Sbjct: 96  STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP---HTFEEEWVAKQTKRMLDMKVAP 152
Query: 328 ITGTASKWDYEKNDWKK 344
           I G ++KWDY+KN+WKK
Sbjct: 153 IQGFSAKWDYDKNEWKK 169

>pdb|1OCC|D Chain D, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 147

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
           P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EMN 
Sbjct: 14  PSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR 73
Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
            T EWK   G A  F+  T  LL +   Y  G  P    T  EE   +  ++M+D++  P
Sbjct: 74  STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP---HTFEEEWVAKQTKRMLDMKVAP 130
Query: 328 ITGTASKWDYEKNDWKK 344
           I G ++KWDY+KN+WKK
Sbjct: 131 IQGFSAKWDYDKNEWKK 147

>pdb|3I2E|A Chain A, Crystal Structure Of Human Dimethylarginine Dymethylaminohydrolase-1 (Ddah-1) Length = 308

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96  KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
           +V +  A RQH+ +V +L   LGL V+ELP DE LP+ VF+ED AV+     LIT+PG  
Sbjct: 60  EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 119
Query: 155 QRHKEV 160
            R KEV
Sbjct: 120 SRRKEV 125

>pdb|3P8P|A Chain A, Crystal Structure Of Human Dimethylarginine Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound With N5-(1-Iminopentyl)-L-Ornithine Length = 308

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96  KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
           +V +  A RQH+ +V +L   LGL V+ELP DE LP+ VF+ED AV+     LIT+PG  
Sbjct: 60  EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 119
Query: 155 QRHKEV 160
            R KEV
Sbjct: 120 SRRKEV 125

>pdb|2JAJ|A Chain A, Ddah1 Complexed With L-257 Length = 289

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96  KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
           +V +  A RQH+ +V +L   LGL V+ELP DE LP+ VF+ED AV+     LIT+PG  
Sbjct: 41  EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 100
Query: 155 QRHKEV 160
            R KEV
Sbjct: 101 SRRKEV 106

>pdb|2JAI|A Chain A, Ddah1 Complexed With Citrulline Length = 289

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96  KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
           +V +  A RQH+ +V +L   LGL V+ELP DE LP+ VF+ED AV+     LIT+PG  
Sbjct: 41  EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 100
Query: 155 QRHKEV 160
            R KEV
Sbjct: 101 SRRKEV 106

>pdb|2C6Z|A Chain A, Crystal Structure Of Dimethylarginine Dimethylaminohydrolase I In Complex With Citrulline Length = 284

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 102 ARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKE 159
           A RQH+ +V +L   LGL V++LP DE LP+ VF+ED AV+     LIT+PG   R KE
Sbjct: 42  AERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKE 100

>pdb|3BPB|A Chain A, Crystal Structure Of The Dimethylarginine Dimethylaminohydrolase H162g Adduct With S-Methyl-L- Thiocitrulline Length = 254

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 86  VSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGI 145
           V  LT   + K    +A  QH +++  L+   +D+  LPPDE  P+SVF+ED  +  +  
Sbjct: 15  VDGLTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRC 74
Query: 146 VLITKPGNTQRHKEVAV 162
            +IT+PG   R  E  +
Sbjct: 75  AIITRPGAESRRGETEI 91

>pdb|1H70|A Chain A, Ddah From Pseudomonas Aeruginosa. C249s Mutant Complexed With Citrulline Length = 255

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 86  VSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGI 145
           V  LT   + K    +A  QH +++  L+   +D+  LPPDE  P+SVF+ED  +  +  
Sbjct: 16  VDGLTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRC 75
Query: 146 VLITKPGNTQRHKEVAV 162
            +IT+PG   R  E  +
Sbjct: 76  AIITRPGAESRRGETEI 92

>pdb|3RHY|A Chain A, Crystal Structure Of The Dimethylarginine Dimethylaminohydrolase Adduct With 4-Chloro-2-Hydroxymethylpyridine Length = 254

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 86  VSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGI 145
           V  LT   + K    +A  QH +++  L+   +D+  LPPDE  P+SVF+ED  +  +  
Sbjct: 15  VDGLTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRC 74
Query: 146 VLITKPGNTQRHKEVAV 162
            +IT+PG   R  E  +
Sbjct: 75  AIITRPGAESRRGETEI 91

>pdb|2CI1|A Chain A, Crystal Structure Of Dimethylarginine Dimethylaminohydrolase I In Complex With S-Nitroso- Lhomocysteine Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 96  KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
           +V    A RQH+ +V +L   LGL V++LP DE LP+ VF+ED AV+     LIT+PG  
Sbjct: 30  EVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVXEETALITRPGAP 89
Query: 155 QRHKE 159
            R KE
Sbjct: 90  SRRKE 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	4e-60
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	3e-20
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	8e-56
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	2e-20
3i4a_A	308	N(G),N(G)-dimethylarginine dimethylaminohydrolase	8e-13
2ci1_A	275	NG, NG-dimethylarginine dimethylaminohydrolase 1;	9e-13
1h70_A	255	NG, NG-dimethylarginine dimethylaminohydrolase; DD	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1s9r_A	410	Arginine deiminase; hydrolase, 5-fold pseudo-symme	7e-05

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 169

 Score =  189 bits (482), Expect = 4e-60
 Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 2/147 (1%)

Query: 199 NREVVGYGFNGEPGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYR 257
           +  VV       P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR
Sbjct: 24  HGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYR 83

Query: 258 ASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEML 317
             F ++F EMN  T EWK   G A   +  + L  +   K  ++     T  EE   +  
Sbjct: 84  LKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWE-KHYVYGPIPHTFEEEWVAKQT 142

Query: 318 QKMIDLRWNPITGTASKWDYEKNDWKK 344
           ++M+D++  PI G ++KWDY+KN+WKK
Sbjct: 143 KRMLDMKVAPIQGFSAKWDYDKNEWKK 169

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 169

 Score = 85.8 bits (212), Expect = 3e-20
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 35  LKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
           LK+KEK  W +L+++EK  LYR  F ++F EMN ST EWK   G A   +  + L  +  
Sbjct: 62  LKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWE 121

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ... Length = 147

 Score =  178 bits (452), Expect = 8e-56
 Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 2/137 (1%)

Query: 209 GEPGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEM 267
             P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EM
Sbjct: 12  ALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEM 71

Query: 268 NAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
           N  T EWK   G A   +  + L  +   K  ++     T  EE   +  ++M+D++  P
Sbjct: 72  NRSTNEWKTVVGAAMFFIGFTALLLIWE-KHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 130

Query: 328 ITGTASKWDYEKNDWKK 344
           I G ++KWDY+KN+WKK
Sbjct: 131 IQGFSAKWDYDKNEWKK 147

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ... Length = 147

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 35 LKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
          LK+KEK  W +L+++EK  LYR  F ++F EMN ST EWK   G A   +  + L  +  
Sbjct: 40 LKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWE 99

>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A* Length = 308

 Score = 67.1 bits (163), Expect = 8e-13
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 96  KVGIDEARRQHESFVALLR-DLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPG-N 153
           +V +  A RQH+ +V +L   LGL V+ELP DE LP+ VF+ED AV+     LIT+PG  
Sbjct: 60  EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 119

Query: 154 TQRHKEVAVSA 164
           ++R +   +  
Sbjct: 120 SRRKEVDMMKE 130

>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A* Length = 275

 Score = 66.6 bits (162), Expect = 9e-13
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 96  KVGIDEARRQHESFVALLR-DLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPG-N 153
           +V    A RQH+ +V +L   LGL V++LP DE LP+ VF+ED AV+     LIT+PG  
Sbjct: 30  EVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVXEETALITRPGAP 89

Query: 154 TQRHKEVAVSA 164
           ++R +   +  
Sbjct: 90  SRRKEADMMKE 100

>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A* Length = 255

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 96  KVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQ 155
           K    +A  QH +++  L+   +D+  LPPDE  P+SVF+ED  +  +   +IT+PG   
Sbjct: 26  KPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAIITRPGAES 85

Query: 156 RHKE 159
           R  E
Sbjct: 86  RRGE 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 56/380 (14%), Positives = 112/380 (29%), Gaps = 119/380 (31%)

Query: 3   SRVAVSATRALIKPKSLAASYSAASAHSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQT 62
            ++ ++ TR     K +    SAA   +    L          LT +E K+L      + 
Sbjct: 266 CKILLT-TR----FKQVTDFLSAA--TTTHISLDHHSMT----LTPDEVKSL----LLK- 309

Query: 63  FVEMNAST--GEWKGAFGIAFMVVTV---SLLTYVLMYK----VGIDEARRQHESFVALL 113
           +++        E           +++   S+   +  +     V  D+     ES + +L
Sbjct: 310 YLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 114 ---------RDLGLDVIELPPDEDLPESVFI--------EDTAVIVNGIV---LITKPGN 153
                      L +     PP   +P  +           D  V+VN +    L+ K   
Sbjct: 367 EPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 154 TQR------HKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGF 207
                    + E+ V         +S+   Y+      ++ +   + D         Y +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--------QYFY 474

Query: 208 NGEPGYI-----------DNPMFP--YPSIRFKAITKELEPLKQK---------EKGDWK 245
           +    +I              +F   +   RF         L+QK           G   
Sbjct: 475 S----HIGHHLKNIEHPERMTLFRMVFLDFRF---------LEQKIRHDSTAWNASGSIL 521

Query: 246 NLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYK------VG 299
           N   + K   Y+      ++  N P  E      + F+     +   ++  K      + 
Sbjct: 522 NTLQQLKF--YKP-----YICDNDPKYERLVNAILDFL---PKIEENLICSKYTDLLRIA 571

Query: 300 IFPEKAETLSEEHRQEMLQK 319
           +  E      E H+Q  +Q+
Sbjct: 572 LMAEDEAIFEEAHKQ--VQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 70/257 (27%)

Query: 107 ESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATR 166
           ++FV    +   D  ++   +D+P+S+    +   ++ I++              VS T 
Sbjct: 27  DAFV---DNF--DCKDV---QDMPKSIL---SKEEIDHIIMSKDA----------VSGTL 65

Query: 167 ALI-----KPKSLAASYSAASAHSN-----EPVAKEHFDFFPNREVVGYGFNGEPGYIDN 216
            L      K + +   +       N      P+  E     P+     Y    +  Y DN
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDN 123

Query: 217 PMF-PYPSIRFKAITKELEPLKQKEKGDWKNLTLEEK----KTLYRASFAQTF-VEMNAP 270
            +F  Y   R +   K  + L +      KN+ ++      KT        ++ V+    
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 271 TGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKM---IDLRWNP 327
                  F I ++              +          S E   EMLQK+   ID  W  
Sbjct: 182 -------FKIFWL-------------NLK------NCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 328 ITGTASKWDYEKNDWKK 344
            +  +S      +  + 
Sbjct: 216 RSDHSSNIKLRIHSIQA 232

>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A* Length = 410

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 11/49 (22%), Positives = 16/49 (32%)

Query: 114 RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAV 162
            DLG++       + +P   F  D    V   V I       R +E   
Sbjct: 138 YDLGIEADHELIVDPMPNLYFTRDPFASVGNGVTIHYMRYKVRQRETLF 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	100.0
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	100.0
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	99.91
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	99.9
3i4a_A	308	N(G),N(G)-dimethylarginine dimethylaminohydrolase	99.87
1h70_A	255	NG, NG-dimethylarginine dimethylaminohydrolase; DD	99.82
2ci1_A	275	NG, NG-dimethylarginine dimethylaminohydrolase 1;	99.79
1s9r_A	410	Arginine deiminase; hydrolase, 5-fold pseudo-symme	99.78
1bwd_A	348	ADT, protein (inosamine-phosphate amidinotransfera	99.75
1jdw_A	423	L-arginine\:glycine amidinotransferase; creatine b	99.75
2a9g_A	418	Arginine deiminase; arginine degradation pathway,	99.7
4e4j_A	433	Arginine deiminase; L-arginine, L-citrulline, NH3,	99.64

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...

Probab=100.00  E-value=3.1e-59  Score=405.43  Aligned_cols=146  Identities=33%  Similarity=0.639  Sum_probs=141.4

Q ss_pred             CCeEEEeeeccCCCcccCCCCCCCCCcccccc-ccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcchhh
Q psy945          198 PNREVVGYGFNGEPGYIDNPMFPYPSIRFKAI-TKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKG  276 (344)
Q Consensus       198 g~r~~VG~G~rt~p~y~d~~d~pLpd~rf~~~-~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e~k~  276 (344)
                      |+|++||||.+|.|.|.|++|+|+|++||++. ++++++|+|||||||++||++|||||||+||||||||+++|+||||.
T Consensus         1 g~r~vv~~~~~~~p~Y~d~~d~P~P~i~f~~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~p~gewK~   80 (147)
T 1v54_D            1 AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKT   80 (147)
T ss_dssp             ---CCCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHH
T ss_pred             CCCcccccCcCCCceecccCCCCCCCccccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhH
Confidence            57899999999999999999999999999976 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCcccccccccccCccCC
Q psy945          277 AFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK  344 (344)
Q Consensus       277 vfg~~~v~ig~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY~~~~wk~  344 (344)
                      |||++++++|+++++|+++|.+ +|+|+|+||++|||+||+||||++++|||+|+||+|||+||+|||
T Consensus        81 v~g~v~~~i~~s~~~f~~~r~~-v~~p~P~T~~~Ewqeaq~erm~~~~~nPi~G~ss~wdYe~~~Wkk  147 (147)
T 1v54_D           81 VVGAAMFFIGFTALLLIWEKHY-VYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK  147 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHHHccCCCCcCchhhhchhhcccCC
Confidence            9999999999999999999999 899999999999999999999999999999999999999999997

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=1e-58  Score=409.62  Aligned_cols=149  Identities=32%  Similarity=0.612  Sum_probs=141.5

Q ss_pred             cCCCCeEEEeeeccCCCcccCCCCCCCCCcccccc-ccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcc
Q psy945          195 DFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAI-TKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGE  273 (344)
Q Consensus       195 ~~ig~r~~VG~G~rt~p~y~d~~d~pLpd~rf~~~-~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e  273 (344)
                      +..|+|++||||.+|.|.|.|++|+|+|++||++. ++++++|+|||||||++||+|||||+||+||||||||+++|+||
T Consensus        20 ~~~g~revv~~~~~~~p~Y~Dr~d~P~P~irf~~~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~ptgE   99 (169)
T 2y69_D           20 CVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNE   99 (169)
T ss_dssp             ------CCCCGGGTTSCCCCCCTTCCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSH
T ss_pred             eeecCcceeccCcCCCceecccCCCCCCCCcccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCc
Confidence            44589999999999999999999999999999977 89999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCcccccccccccCccCC
Q psy945          274 WKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK  344 (344)
Q Consensus       274 ~k~vfg~~~v~ig~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY~~~~wk~  344 (344)
                      ||.|||++++++|+++++|+++|.+ +|+|+|+||++|||+||+||||++++|||+|+||+||||||+|||
T Consensus       100 WK~V~ggv~~~i~~s~~~f~~~r~~-v~~p~P~T~~~Ewqeaq~erml~~~~NPitG~SSkwdYe~~~WKk  169 (169)
T 2y69_D          100 WKTVVGAAMFFIGFTALLLIWEKHY-VYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK  169 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHHHcCCCCCcCchhhhccccceeCC
Confidence            9999999999999999999999999 899999999999999999999999999999999999999999997

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...

Probab=99.91  E-value=1.5e-26  Score=200.60  Aligned_cols=79  Identities=32%  Similarity=0.543  Sum_probs=69.8

Q ss_pred             CCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeecccc----cChHHHHHH
Q psy945           30 SNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYK----VGIDEARRQ  105 (344)
Q Consensus        30 ~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~~----vD~d~A~~Q  105 (344)
                      .++.+|||||||||++||+||||+|||+||||||+||++|+||||+|+|++|+++|++++++.|+..    +-....-+|
T Consensus        35 ~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~p~gewK~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~E  114 (147)
T 1v54_D           35 ASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEE  114 (147)
T ss_dssp             HHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHH
T ss_pred             HHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Confidence            4589999999999999999999999999999999999999999999999999999999999998873    223444556


Q ss_pred             HHH
Q psy945          106 HES  108 (344)
Q Consensus       106 h~~  108 (344)
                      |++
T Consensus       115 wqe  117 (147)
T 1v54_D          115 WVA  117 (147)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=99.90  E-value=3.8e-26  Score=201.86  Aligned_cols=79  Identities=32%  Similarity=0.543  Sum_probs=70.1

Q ss_pred             CCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeecccc----cChHHHHHH
Q psy945           30 SNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYK----VGIDEARRQ  105 (344)
Q Consensus        30 ~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~~----vD~d~A~~Q  105 (344)
                      .++++|||||||||++||+||||+|||+||||||+||++|+||||+|+|++|+++|++++++.|+..    +-....-+|
T Consensus        57 ~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~ptgEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~E  136 (169)
T 2y69_D           57 ASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEE  136 (169)
T ss_dssp             HHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHH
T ss_pred             HHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Confidence            4689999999999999999999999999999999999999999999999999999999999998873    233444566


Q ss_pred             HHH
Q psy945          106 HES  108 (344)
Q Consensus       106 h~~  108 (344)
                      |++
T Consensus       137 wqe  139 (169)
T 2y69_D          137 WVA  139 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*

Probab=99.87  E-value=1.1e-22  Score=195.82  Aligned_cols=184  Identities=26%  Similarity=0.305  Sum_probs=127.3

Q ss_pred             HHHhhhhhHHHhhc--cCCCchhhhhhheeeeeeee----EEeecccccChHHHHHHHHHHHHHHH-HCCCeEEEeCCCC
Q psy945           55 YRASFAQTFVEMNA--STGEWKGAFGIAFMVVTVSL----LTYVLMYKVGIDEARRQHESFVALLR-DLGLDVIELPPDE  127 (344)
Q Consensus        55 yr~~f~~t~~e~~~--~~~ewk~~~~~~~~~~~vs~----lin~~M~~vD~d~A~~Qh~~lv~~Lr-~~Gv~V~~L~~~~  127 (344)
                      -|-|..-+||-|-.  +.++.|.+|   +--++-++    +....-.++|+++|++||++|+++|+ ++||+|++++|.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~ai---vr~p~~s~~~~~~~~~~~~~~d~~~A~~q~~~l~~~Lr~~~Gv~V~~l~~~~   92 (308)
T 3i4a_A           16 PRGSHMASMAGLGHPAAFGRATHAV---VRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGLQVVELPADE   92 (308)
T ss_dssp             ---------------CCTTCCSEEE---EECCCTTHHHHSCCSSCCCCCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCT
T ss_pred             cCcchhhhhhhccCcccccceeEEE---EeCCCHHHhccccccccCCCCCHHHHHHHHHHHHHHHhhcCCCEEEEcCCCC
Confidence            35666677777776  666666542   11111111    12222457999999999999999999 9999999999999


Q ss_pred             CCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcccccccc--ccc-ccccCCCCcccccccCCCCeEEEe
Q psy945          128 DLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKSLAAS--YSA-ASAHSNEPVAKEHFDFFPNREVVG  204 (344)
Q Consensus       128 ~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~~~~i~--~~~-~~~~~~eG~~~~~~~~ig~r~~VG  204 (344)
                      ++||+||+||++++++++++++||+.++||+|...+.  .|++.  .++.  .+. .+++.+||    |++.+|+.++||
T Consensus        93 ~~Pd~vF~rD~~~vi~~~vii~~m~~~~Rr~E~~~~~--~~l~~--~g~~i~~~~~~~~~lEGG----Dvl~~g~~v~vG  164 (308)
T 3i4a_A           93 SLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMK--EALEK--LQLNIVEMKDENATLDGG----DVLFTGREFFVG  164 (308)
T ss_dssp             TCTTTTCGGGGEEEETTEEEECCCSSGGGGGGHHHHH--HHHHT--TTCEEEECCCTTCCCCGG----GEEECSSCEEEE
T ss_pred             CCCCeEeecCeEEEECCEEEEeCCCchhhhhhHHHHH--HHHHH--CCCeEEEccCCCCcCccc----eEEEECCEEEEE
Confidence            9999999999999999999999999999999999876  67762  2332  222 35677777    666678889999


Q ss_pred             eeccCCCcccC--------CCCCCCCCccccccccccccccccccCCCcCCChHHHHhhchhhcc
Q psy945          205 YGFNGEPGYID--------NPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFA  261 (344)
Q Consensus       205 ~G~rt~p~y~d--------~~d~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~  261 (344)
                      +|.||++..++        ....+++-++++|+|+.++.|++.            +..+|+..+.
T Consensus       165 ~s~RTn~~gi~~l~~~l~~~~Vv~v~~~~~~HLDt~~~~l~~~------------~~lv~~~~~~  217 (308)
T 3i4a_A          165 LSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPN------------LIAIGSSESA  217 (308)
T ss_dssp             ESSSCCHHHHHHHHHHTTTSCEEEEECCTTCCGGGSEEEEETT------------EEEEECSHHH
T ss_pred             EchhcCHHHHHHHHHHcCCCeEEEEECCCccChhheEEeeCCC------------EEEEECchhc
Confidence            99999998773        122223333889999999999854            5666665554

>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*

Probab=99.82  E-value=4.9e-21  Score=178.92  Aligned_cols=195  Identities=17%  Similarity=0.215  Sum_probs=144.0

Q ss_pred             ccccChHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcccc
Q psy945           94 MYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKS  173 (344)
Q Consensus        94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~~  173 (344)
                      ..++|.++|++||++|+++||++|++|+++++.+++||+||+||+++++++++++++|+.++||+|...++  .+++...
T Consensus        24 ~~~~~~~~A~~e~~~~~~~L~~~Gv~V~~l~~~~~~Pd~vF~rD~~~~~~~~~~~~~m~~~~R~~E~~~~~--~~l~~~g  101 (255)
T 1h70_A           24 LGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAIITRPGAESRRGETEIIE--ETVQRFY  101 (255)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHTTSSCEEEEECCCTTCTTTTCTTTTEEECSSCEEECBCSSGGGTTHHHHHH--HHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHcCCEEEEcCCcccCcCcEeecCcEEEECCcEEEeCCCChHHhchHHHHH--HHHHHcC
Confidence            35889999999999999999999999999999999999999999999999999999999999999999876  5666211


Q ss_pred             -cccccccccccCCCCcccccccCCCCeEEEeeeccCCCcccC----CC---C-----CCCCCccccccccccccccccc
Q psy945          174 -LAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYID----NP---M-----FPYPSIRFKAITKELEPLKQKE  240 (344)
Q Consensus       174 -~~i~~~~~~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d----~~---d-----~pLpd~rf~~~~~~l~~L~eke  240 (344)
                       ..+..+..+...+||    +++..|+.+++|+|.||++..++    ..   .     ++++|  ++|+|+.++.+++. 
T Consensus       102 ~~~v~~~~~~~~lEGG----dv~~~g~~~~vg~s~Rt~~~~~~~l~~~l~~~g~~vi~~~~~~--~~HlD~~~~~v~~~-  174 (255)
T 1h70_A          102 PGKVERIEAPGTVEAG----DIMMVGDHFYIGESARTNAEGARQMIAILEKHGLSGSVVRLEK--VLHLKTGLAYLEHN-  174 (255)
T ss_dssp             TTCEEECCTTCCBCGG----GEEEETTEEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEECSS--SSSGGGSEEECSTT-
T ss_pred             CCcEEEeCCCceEecc----eEEEECCEEEEEEccCCcHHHHHHHHHHHhhCCCEEEEEECCC--CcchhheeeecCCC-
Confidence             112222344667777    44445888999999999988772    11   2     44666  89999999999964 


Q ss_pred             cCCCcCCChHHHHhhchhhcccc-c--cCCc-CCCcchhhHHHHHHHHHHHHH-------HHHHHHHHhccCCCCCCCCc
Q psy945          241 KGDWKNLTLEEKKTLYRASFAQT-F--VEMN-APTGEWKGAFGIAFMVVTVSL-------LTYVLMYKVGIFPEKAETLS  309 (344)
Q Consensus       241 kgdWk~Ls~eEk~alY~~aF~~~-~--pe~~-~~~~e~k~vfg~~~v~ig~~~-------~~~~~~r~~~~~~p~P~tls  309 (344)
                                 +..+|+..+.+. +  =+.+ .|.++   .+++|++.++-.+       .+...++.. ++.++|.+++
T Consensus       175 -----------~~~~~~~~~~~~~~~~~~ii~~~~~e---~~~~N~l~i~~~Vi~~~~~~~~~~~l~~~-g~~vi~v~~~  239 (255)
T 1h70_A          175 -----------NLLAAGEFVSKPEFQDFNIIEIPEEE---SYAANCIWVNERVIMPAGYPRTREKIARL-GYRVIEVDTS  239 (255)
T ss_dssp             -----------EEEECGGGTTCGGGTTSEEEECCGGG---GGGGCCEEETTEEEEESSCHHHHHHHHTT-TCEEEEECCH
T ss_pred             -----------EEEEECCcCCHhHhCceEEEECCCcc---cccccEEEECCEEEeCCCCHHHHHHHHHC-CCeEEEechH
Confidence                       567777766542 1  1222 23333   3788887665211       123455666 7788888877


Q ss_pred             HHH
Q psy945          310 EEH  312 (344)
Q Consensus       310 eew  312 (344)
                      |.-
T Consensus       240 el~  242 (255)
T 1h70_A          240 EYR  242 (255)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A*

Probab=99.79  E-value=1.4e-19  Score=170.37  Aligned_cols=135  Identities=27%  Similarity=0.400  Sum_probs=110.8

Q ss_pred             cccChHHHHHHHHHHHHHHH-HCCCeEEEeCCCCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcccc
Q psy945           95 YKVGIDEARRQHESFVALLR-DLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKS  173 (344)
Q Consensus        95 ~~vD~d~A~~Qh~~lv~~Lr-~~Gv~V~~L~~~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~~  173 (344)
                      .++|.++|++||++|+++|+ ++|++|+.+++.+++||+||+||+++++++++++++|+.++|++|...++  .+++  .
T Consensus        29 ~~~~~~~A~~e~~~~~~~L~~~~Gv~V~~l~~~~~~Pd~vF~rD~~~v~~~~~~~~~~~~~~R~~E~~~~~--~~~~--~  104 (275)
T 2ci1_A           29 DEVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVXEETALITRPGAPSRRKEADMMK--EALE--K  104 (275)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGGGGEEEETTEEEECCCSSGGGTTHHHHHH--HHHH--H
T ss_pred             CCCCHHHHHHHHHHHHHHHHhccCcEEEEeCCCCCCCCceeccceEEEeCCceEEecCCcccccccHHHHH--HHHH--H
Confidence            47999999999999999999 89999999999999999999999999999999999999999999999877  5666  2


Q ss_pred             cccccc---cccccCCCCcccccccCCCCeEEEeeeccCCCcccC--------CCC--CCCCCcccccccccccccccc
Q psy945          174 LAASYS---AASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYID--------NPM--FPYPSIRFKAITKELEPLKQK  239 (344)
Q Consensus       174 ~~i~~~---~~~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d--------~~d--~pLpd~rf~~~~~~l~~L~ek  239 (344)
                      .++...   ..+...+||    +++..|+.+++|.|.||++..++        ...  ++++|  ++|+|+.++.+++.
T Consensus       105 ~g~~~~~~~~~~~~lEGG----dv~~~g~~~~vg~s~Rt~~~~~~~l~~~l~~~~V~~l~~~~--~~HlD~~~~~~~~~  177 (275)
T 2ci1_A          105 LQLNIVEMKDENATLDGG----DVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVVD--ALHLKSFCSMAGPN  177 (275)
T ss_dssp             TTCEEEECCCTTCCCCGG----GEEECSSEEEEEESSSCCHHHHHHHHHHCTTSEEEEEECCS--SSSGGGSEEEEETT
T ss_pred             cCCCEEEecCCCceEccc----cEEEECCEEEEEecCCCCHHHHHHHHHhcCCCeEEEeeCCC--CcChhhhccccCCC
Confidence            333222   234567777    55566888899999999988873        112  33444  79999988888754

>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*

Probab=99.78  E-value=2.1e-20  Score=186.45  Aligned_cols=198  Identities=16%  Similarity=0.096  Sum_probs=145.5

Q ss_pred             ccChHHHHHHHHHHHHHHHHCCCeEEEeCCC-------------------------------------------------
Q psy945           96 KVGIDEARRQHESFVALLRDLGLDVIELPPD-------------------------------------------------  126 (344)
Q Consensus        96 ~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~-------------------------------------------------  126 (344)
                      .++.++|++||++|+++||++||+|+++++.                                                 
T Consensus        48 ~~~~~~A~~Ehd~f~~~Lr~~GveV~~l~~l~~e~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  127 (410)
T 1s9r_A           48 ILESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSREL  127 (410)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEcchhhhhhhhccCHHHHHHHHHHhhhccccccchhHHHHHHHHHHcCCcHHHH
Confidence            6899999999999999999999999999841                                                 


Q ss_pred             -----------------------CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcc-----ccccccc
Q psy945          127 -----------------------EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKP-----KSLAASY  178 (344)
Q Consensus       127 -----------------------~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l-----~~~~i~~  178 (344)
                                             +.+||++|+||+++++++++++++|+.++||+|...++  .+++.     +.+.+..
T Consensus       128 ~~~~~~g~~~~e~~~~~~~~~~~~plPn~~FtRD~~~~ig~gv~i~~m~~~~Rr~E~~~~~--~i~~~~p~f~~~~~~~~  205 (410)
T 1s9r_A          128 VEIMMAGITKYDLGIEADHELIVDPMPNLYFTRDPFASVGNGVTIHYMRYKVRQRETLFSR--FVFSNHPKLINTPWYYD  205 (410)
T ss_dssp             HHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTSSEEEEBTEEEECCCSSHHHHTTHHHHH--HHHHHCTTTTTCCEEEC
T ss_pred             HHHHHcCCcHHHcccccccccccCCCCCeeecCCcEEEECCEEEEeCCCChHHcCcHHHHH--HHHHhChhhcCCCeEEe
Confidence                                   25999999999999999999999999999999999866  56552     1222233


Q ss_pred             ccccccCCCCcccccccCCCCe-EEEeeeccCCCcccC--------C------CC--CCCCC-ccccccccccccccccc
Q psy945          179 SAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYID--------N------PM--FPYPS-IRFKAITKELEPLKQKE  240 (344)
Q Consensus       179 ~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d--------~------~d--~pLpd-~rf~~~~~~l~~L~eke  240 (344)
                      ...+.+.+||    |++.+|+. ++||.|.||++..+.        .      +.  +++|. ..++|+|+.++.|++. 
T Consensus       206 ~~~~~~lEGG----Dvl~lg~~~v~vG~S~RTn~~gi~~la~~l~~~g~~~~~~V~~v~~p~~~~~mHLDtvft~l~~~-  280 (410)
T 1s9r_A          206 PSLKLSIEGG----DVFIYNNDTLVVGVSERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKD-  280 (410)
T ss_dssp             GGGCSCCCGG----GEEECSSSEEEEEESSSCCHHHHHHHHHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSS-
T ss_pred             cCCCCcccCc----ceEEECCCEEEEEECccCCHHHHHHHHHHhhhccCccceEEEEEEccCCccccchhheeeeccCC-
Confidence            3345667777    66667875 799999999998882        1      11  45665 6799999999999964 


Q ss_pred             cCCCcCCChHHHHhhchhhccc----------------------c------------ccCCcCCCc--ch------hhHH
Q psy945          241 KGDWKNLTLEEKKTLYRASFAQ----------------------T------------FVEMNAPTG--EW------KGAF  278 (344)
Q Consensus       241 kgdWk~Ls~eEk~alY~~aF~~----------------------~------------~pe~~~~~~--e~------k~vf  278 (344)
                                 +..+|+..+++                      .            ..+.+..++  +.      ...+
T Consensus       281 -----------~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lg~~~~~iI~~~~~~d~~~~~~eqw~~  349 (410)
T 1s9r_A          281 -----------KFLYSPIANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERETHFD  349 (410)
T ss_dssp             -----------EEEECGGGTTTCEEEEEETTTSCSSCCCEEECCCHHHHHHHHHSSCCEEEETTCTTCCHHHHHHHHHTT
T ss_pred             -----------eEEEccccccccceeeeecccccccccccccchhHHHHHHHhhCCCCCEEEECCCCcchhhhHHHHHhc
Confidence                       56677766643                      1            123333332  21      2247


Q ss_pred             HHHHHHHHHH--------HHHHHHHHHhccCCCCCCCCcHHH
Q psy945          279 GIAFMVVTVS--------LLTYVLMYKVGIFPEKAETLSEEH  312 (344)
Q Consensus       279 g~~~v~ig~~--------~~~~~~~r~~~~~~p~P~tlseew  312 (344)
                      |+|++.++=+        ..+-..++.. |+.+++.+++|.-
T Consensus       350 g~N~L~i~pg~Vi~~~~n~~t~~~L~~~-G~~Vi~v~~sEl~  390 (410)
T 1s9r_A          350 GTNYLAIRPGVVIGYSRNEKTNAALEAA-GIKVLPFHGNQLS  390 (410)
T ss_dssp             TTCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECCHHHH
T ss_pred             cCCEEEECCCEEEecCCCHHHHHHHHHC-CCEEEEechHHHh
Confidence            7887766522        2334567888 8999999998764

>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2

Probab=99.75  E-value=3.3e-19  Score=173.88  Aligned_cols=201  Identities=13%  Similarity=0.014  Sum_probs=142.0

Q ss_pred             ecccccChHHHHHHHHHHHHHHHHCCCeEEEeCCCC------------CCCCceecCCceEEECCeEEEeCCCCccCcCh
Q psy945           92 VLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDE------------DLPESVFIEDTAVIVNGIVLITKPGNTQRHKE  159 (344)
Q Consensus        92 ~~M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~------------~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E  159 (344)
                      +|+ ++|.++|++||++|+++||++||+|+.+++.+            ++||+||+||+++++++++++++|+.++||+|
T Consensus        52 ~~~-~~~~~~A~~e~~~~~~~Lr~~Gv~V~~l~~~~~~~~~~~~~~~~~~pd~~F~rD~~~vi~~~vi~~~m~~~~R~~E  130 (348)
T 1bwd_A           52 AYP-DRVLKETEEELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTIIETPMALRSRFLE  130 (348)
T ss_dssp             ECC-HHHHHHHHHHHHHHHHHHHHTTCEEECCCCCCSSSCEECSSCEECCCCSSCGGGSEEESSSEEEECCCSSGGGTTG
T ss_pred             CCC-hHHHHHHHHHHHHHHHHHHHCCCEEEecCCCChhhhccCccccCCCcccccCCCcEEEECCcEEEcCCCChhhhhh
Confidence            444 77999999999999999999999999999987            89999999999999999999999999999999


Q ss_pred             hhhhHHHHhhcccc--------------------cccc---cccc-cccCCCCcccccccCCCCeEEEeeeccCCCcccC
Q psy945          160 VAVSATRALIKPKS--------------------LAAS---YSAA-SAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYID  215 (344)
Q Consensus       160 ~~~~~t~~~~~l~~--------------------~~i~---~~~~-~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d  215 (344)
                      ...++  .+++.-.                    .++.   .+.. ....+||    +++.+|+.++||.|.||++..+.
T Consensus       131 ~~~~~--~~l~~~~~~g~~w~~~p~p~~~~~~~d~~~~~~~~~~~~~~~lEGG----dv~~~g~~~~vg~s~Rt~~~~ie  204 (348)
T 1bwd_A          131 SLAYK--DLLLEYFASGSRWLSAPKPRLTDDSYAPQAPAGERLTDEEPVFDAA----NVLRFGTDLLYLVSDSGNELGAK  204 (348)
T ss_dssp             GGGGH--HHHHHHHTTTCEEEECCCCCCCGGGBCTTSCTTCSBCSSSCCBCGG----GEEEETTEEEEECBTTBCHHHHH
T ss_pred             HHHHH--HHHHHHhhcccccccCCCccccccccccCCcceeeccCCceeEecc----eEEEECCEEEEEecccCCHHHHH
Confidence            99876  5555210                    0121   1222 3556777    44455888899999999887773


Q ss_pred             C---------CC--CCCCCccccccccccccccccccCCCcCCChHHHHhhchhhcccc-cc------CCc-CCCcch--
Q psy945          216 N---------PM--FPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQT-FV------EMN-APTGEW--  274 (344)
Q Consensus       216 ~---------~d--~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~-~p------e~~-~~~~e~--  274 (344)
                      .         ..  ++++ ..++|+|+.++.+++.            ++.+|+..|... ..      +.+ .|.++-  
T Consensus       205 ~l~~~l~~~~~v~~~~~~-~~~~HlDt~~~~v~~~------------~vl~~~~~~~~~~~~~~L~~~~iI~~~~~~~~~  271 (348)
T 1bwd_A          205 WLQSAVGDTYTVHPCRKL-YASTHVDSTIVPLRPG------------LVLTNPSRVNDENMPDFLRSWENITCPELVDIG  271 (348)
T ss_dssp             HHHHHHCTTSEEEEESSS-CCSSCGGGTEEEEETT------------EEEECTTTCCTTTSCGGGTTSEEEECCCCCCCC
T ss_pred             HHHHHhcCCcEEEEecCC-CCCcchhheEEecCCC------------EEEEeCCCCCcHHHHHHhcCCEEEECCCccccc
Confidence            1         11  2233 5689999999999964            566676666532 11      111 111110  


Q ss_pred             --------hhHHHHHHHHHHHH--------HHHHHHHHHhccCCCCCCCCcHHHH
Q psy945          275 --------KGAFGIAFMVVTVS--------LLTYVLMYKVGIFPEKAETLSEEHR  313 (344)
Q Consensus       275 --------k~vfg~~~v~ig~~--------~~~~~~~r~~~~~~p~P~tlseewk  313 (344)
                              ...+++|++.++=+        ......++.. |+.+++.+++|..+
T Consensus       272 ~~~~~~~~~~w~~~N~l~i~~~~Vi~~~~~~~~~~~L~~~-G~~vi~v~~~el~~  325 (348)
T 1bwd_A          272 FTGDKPHCSVWIGMNLLVVRPDLAVVDRRQTALIRLLEKH-GMNVLPLQLTHSRT  325 (348)
T ss_dssp             CCSSSCSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECCTTHHH
T ss_pred             cccccccccccceeeEEEEcCCEEEEcCCCHHHHHHHHHC-CCEEEEEchHHHhc
Confidence                    01258887655422        2234556777 88888888887654

>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A

Probab=99.75  E-value=5.5e-20  Score=184.18  Aligned_cols=208  Identities=11%  Similarity=0.042  Sum_probs=146.2

Q ss_pred             eeeEEeecccc------------cChHHHHHHHHHHHHHHHHCCCeEEEeCCCC-----CCCC-------ceecCCceEE
Q psy945           86 VSLLTYVLMYK------------VGIDEARRQHESFVALLRDLGLDVIELPPDE-----DLPE-------SVFIEDTAVI  141 (344)
Q Consensus        86 vs~lin~~M~~------------vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~-----~~PD-------~VF~~D~a~v  141 (344)
                      +.+.||++|+.            +|.++|++||++|+++|+++||+|+.+++.+     ++||       ++|+||++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~A~~E~d~~v~~Lr~~GV~V~~l~~~~~~~~~~~PDf~~~~~n~vF~rD~~~v  174 (423)
T 1jdw_A           95 VKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIV  174 (423)
T ss_dssp             HHTTSCGGGHHHHHHHTTSBSCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCCCTTCEEECSSCEEECCCBCCHHHHEEE
T ss_pred             hhhccChhhhhhhhhccccccCchhHHHHHHHHHHHHHHHHHCCCEEEEcCchhhcccccCCccccCccceECCCCcEEE
Confidence            55778888642            6789999999999999999999999999987     7898       9999999999


Q ss_pred             ECCeEEEeCCCCccCcChhhhhHHHHhhcc-ccccc-ccc----------------------------------c-cccc
Q psy945          142 VNGIVLITKPGNTQRHKEVAVSATRALIKP-KSLAA-SYS----------------------------------A-ASAH  184 (344)
Q Consensus       142 ~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l-~~~~i-~~~----------------------------------~-~~~~  184 (344)
                      +++++++++|+.++|++|...++  .+++. ...+. +..                                  . ....
T Consensus       175 ig~~vii~~m~~~~Rr~E~~~~~--~il~~~~~~~~~~~~~P~p~~~d~~~d~~~~i~~~~~~~~~~~~~~~~~~e~e~~  252 (423)
T 1jdw_A          175 VGNEIIEAPMAWRSRFFEYRAYR--SIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPC  252 (423)
T ss_dssp             EBTEEEECCBSCGGGTTGGGGTH--HHHHHHHHTTCEEEECCCCCCCGGGBCTTCCCSSHHHHHHHHHHTCCSBCSSSCC
T ss_pred             ECCeEEEcCCCchhhcccHHHHH--HHHHHhcccCceeeecCccccccccccccccccccccccccccccccccccccce
Confidence            99999999999999999998766  45542 00000 000                                  0 0135


Q ss_pred             CCCCcccccccCCCCeEEEeeeccCCCcccC---------CCC--CCCCCccccccccccccccccccCCCcCCChHHHH
Q psy945          185 SNEPVAKEHFDFFPNREVVGYGFNGEPGYID---------NPM--FPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKK  253 (344)
Q Consensus       185 ~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d---------~~d--~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~  253 (344)
                      .+||    +++..|+.+++|.|.||++..+.         ...  ++++|..++|+|+.++.+++.            ++
T Consensus       253 lEGG----Dvl~~G~~llvg~s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~------------~v  316 (423)
T 1jdw_A          253 FDAA----DFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPG------------IV  316 (423)
T ss_dssp             BCGG----GEEEETTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETT------------EE
T ss_pred             eecc----eeEEeCCEEEEEecccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCC------------eE
Confidence            6666    44456888899999999987762         111  567788899999999999965            45


Q ss_pred             hhchhhccc-------cccCCcCCCcchhh----------HHHHHHHHHH-HH-------HHHHHHHHHhccCCCCCCCC
Q psy945          254 TLYRASFAQ-------TFVEMNAPTGEWKG----------AFGIAFMVVT-VS-------LLTYVLMYKVGIFPEKAETL  308 (344)
Q Consensus       254 alY~~aF~~-------~~pe~~~~~~e~k~----------vfg~~~v~ig-~~-------~~~~~~~r~~~~~~p~P~tl  308 (344)
                      .+|+..+..       ...+.+..+.+...          .+++|++.++ -.       -.....++.. |+.+++.++
T Consensus       317 lv~~~~~~~~~~~L~~~~~~iI~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI~~~~~~~~~~~L~~~-G~~Vi~v~~  395 (423)
T 1jdw_A          317 LSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKL-GITTIKVNI  395 (423)
T ss_dssp             EECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECC
T ss_pred             EEecchhHHHHHHHHhCCCEEEECCCchhccccccccccccceeeEEEECCCEEEEeCCCHHHHHHHHHC-CCEEEEecH
Confidence            556555432       12222221111111          2688877665 21       2224455777 788888888


Q ss_pred             cHHH
Q psy945          309 SEEH  312 (344)
Q Consensus       309 seew  312 (344)
                      +|..
T Consensus       396 ~el~  399 (423)
T 1jdw_A          396 RNAN  399 (423)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A*

Probab=99.70  E-value=1.8e-18  Score=172.60  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=115.8

Q ss_pred             ccChHHHHHHHHHHHHHHHHCCCeEEEeCCC-------------------------------------------------
Q psy945           96 KVGIDEARRQHESFVALLRDLGLDVIELPPD-------------------------------------------------  126 (344)
Q Consensus        96 ~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~-------------------------------------------------  126 (344)
                      .++.++|++||++|+++||++||+|+++++.                                                 
T Consensus        45 ~~~~~~A~~Ehd~f~~~Lr~~GV~V~~l~~ll~e~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  124 (418)
T 2a9g_A           45 VIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLI  124 (418)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTTCEEEEHHHHHHHHHTSHHHHHHHHHHHSSTTTTCTTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEchHHHHHHhcCHHHHHHHHHHHhhhcccchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5799999999999999999999999999863                                                 


Q ss_pred             -------------------------------CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhccc---
Q psy945          127 -------------------------------EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPK---  172 (344)
Q Consensus       127 -------------------------------~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~---  172 (344)
                                                     +.+||+||+||++++++++++++||+.++||+|...++  .+++.-   
T Consensus       125 ~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~lPd~vF~rD~~~vi~~~vii~~m~~~~Rr~E~~~~~--~i~~~~~~f  202 (418)
T 2a9g_A          125 GGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTT--AIYKFHPEF  202 (418)
T ss_dssp             HCBCGGGSCCCHHHHHHHHHHHHTCCCCCSBCCCGGGGCHHHHEEECSSEEEECCCSSGGGTTHHHHHH--HHHHHSTTT
T ss_pred             cCCCHHHccccccchhHHHhhhccCCcccccCCCCCeEecCCcEEEECCeEEEeCCCChHhcccHHHHH--HHHHhChhh
Confidence                                           56999999999999999999999999999999999876  565410   


Q ss_pred             -cccc---c----cccccccCCCCcccccccCCCCe-EEEeeeccCCCcccC--------C----CC--CCCCCcc-ccc
Q psy945          173 -SLAA---S----YSAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYID--------N----PM--FPYPSIR-FKA  228 (344)
Q Consensus       173 -~~~i---~----~~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d--------~----~d--~pLpd~r-f~~  228 (344)
                       ..++   .    ....+...+||    +++.+|+. ++||.|.||++..+.        .    +.  +++|..+ ++|
T Consensus       203 ~~~~~~~~~~~p~~~~~~~~lEGG----Dvl~~g~~~llvG~s~RTn~~~ie~l~~~l~~~g~~~~V~~l~~~~~~~~~H  278 (418)
T 2a9g_A          203 ANAEFEIWYGDPDKDHGSSTLEGG----DVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMH  278 (418)
T ss_dssp             TTCCCEEEEECTTSCCTTCCCCGG----GEECCSSSEEEEEESSSSCHHHHHHHHHHHHHTTSCSEEEEEECCCCSSCCC
T ss_pred             hccCCcEEeccccCcCCCCcEecc----eEEEECCceEEEEcCCcCCHHHHHHHHHHhcCCCCccEEEEEecCCCCCCcC
Confidence             1122   1    11234556666    66666765 699999999988772        1    11  4566666 899


Q ss_pred             cccccccccccccCCCcCCChHHHHhhchhhcc
Q psy945          229 ITKELEPLKQKEKGDWKNLTLEEKKTLYRASFA  261 (344)
Q Consensus       229 ~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~  261 (344)
                      +|+.++.+++.            +..+|+..++
T Consensus       279 LDt~~~~l~~~------------~~~~~~~~~~  299 (418)
T 2a9g_A          279 LDTVFSFCDRD------------LVTVFPEVVK  299 (418)
T ss_dssp             HHHHEEEEETT------------EEEECHHHHT
T ss_pred             hhheeEecCCC------------EEEEECCccC
Confidence            99999999954            6777777764

>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}

Probab=99.64  E-value=8.4e-17  Score=161.11  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=115.0

Q ss_pred             ccccChHHHHHHHHHHHHHHHHCCCeEEEeCC------------------------------------------------
Q psy945           94 MYKVGIDEARRQHESFVALLRDLGLDVIELPP------------------------------------------------  125 (344)
Q Consensus        94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~------------------------------------------------  125 (344)
                      -+.++.++|++||+.|+++||++||+|+.++.                                                
T Consensus        71 ddi~~~~~A~~EHd~f~~~Lr~~GveV~~l~dll~e~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  150 (433)
T 4e4j_A           71 SAVLKADTAIEEHKGFVKILQNNGIKVIQLCDLVAETYELCSKEVRNSFIEQYLDEALPVLKKEIRPVVKDYLLSFPTVQ  150 (433)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHHHHSCHHHHHHHHHHHHHHCSSCCCTTTHHHHHHHHHTSCHHH
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHCCCEEEEhHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHcCChHH
Confidence            34789999999999999999999999998741                                                


Q ss_pred             -----------------------CCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcc-----cccccc
Q psy945          126 -----------------------DEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKP-----KSLAAS  177 (344)
Q Consensus       126 -----------------------~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l-----~~~~i~  177 (344)
                                             .+.+||++|+||+++++++++++++|+.+.||+|...+.  .+++.     +...+.
T Consensus       151 l~~~~~~G~~~~e~~~~~~~~~~~~plPN~vFtRD~~~~i~~gvii~~m~~~~Rr~E~~~~~--~i~~~~~~~~~~~~~~  228 (433)
T 4e4j_A          151 MVRKMMSGILANELNIKQDNPLIIDGMPNLYFTRDPFASMGNGVSINCMKYPTRKREVIFSR--FVFTNNPKYKNTPRYF  228 (433)
T ss_dssp             HHHHHHHCEEGGGGTCCCSSSEEECCCGGGGCTTSSEEEEBTEEEECCCSSHHHHTTHHHHH--HHHHHCTTTTTCCEEE
T ss_pred             HHHHHHcCcchhhhccccCCccccCCCcCeeecCCCeeEEcCeEEEcCCCChHHcCcHHHHH--HHHHcChhhcCCceEE
Confidence                                   145899999999999999999999999999999998765  55552     111111


Q ss_pred             -cccccccCCCCcccccccCCCCe-EEEeeeccCCCcccCCC----------C------CCCC-Cccccccccccccccc
Q psy945          178 -YSAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYIDNP----------M------FPYP-SIRFKAITKELEPLKQ  238 (344)
Q Consensus       178 -~~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d~~----------d------~pLp-d~rf~~~~~~l~~L~e  238 (344)
                       ....+++.+||    |++.+++. .++|+|.||++..++..          .      .++| +..++|+|++++.|++
T Consensus       229 ~~~~~~~~lEGG----Dvl~l~~~~l~iG~s~RTn~~gie~La~~L~~~~~~~~~~v~~~~~~~~~~~mHLDt~ft~ld~  304 (433)
T 4e4j_A          229 DIVGNNGTIEGG----DIFIYNSKTLVIGNSERTNFAAIESVAKNIQANKDCTFERIVVINVPPMPNLMHLDTWLTMLDY  304 (433)
T ss_dssp             CSSSSCSCCCGG----GEEECSSSEEEEEESSSCCHHHHHHHHHHHHTCSSCCCCEEEEEECCCCTTCCSHHHHEEECSS
T ss_pred             eccCCCceEecc----eEEEECCCEEEEEecccChHHHHHHHHHHHhhcCceeEEEEEeecccCCccceecCceEEEeCC
Confidence             11245677787    55566755 58899999999987311          1      1233 4568999999999996


Q ss_pred             cccCCCcCCChHHHHhhchhhccc
Q psy945          239 KEKGDWKNLTLEEKKTLYRASFAQ  262 (344)
Q Consensus       239 kekgdWk~Ls~eEk~alY~~aF~~  262 (344)
                      .            +..+|+..|+.
T Consensus       305 d------------~~li~p~~~~~  316 (433)
T 4e4j_A          305 D------------KFLYSPNMMNV  316 (433)
T ss_dssp             S------------EEEECTTSBSE
T ss_pred             C------------eEEEchhhcCc
Confidence            4            57788887763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d1v54d_	144	f.23.1.1 (D:) Mitochondrial cytochrome c oxidase s	5e-57
d1v54d_	144	f.23.1.1 (D:) Mitochondrial cytochrome c oxidase s	1e-21
d1h70a_	255	d.126.1.3 (A:) Dimethylarginine dimethylaminohydro	4e-09

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  179 bits (457), Expect = 5e-57
 Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 2/137 (1%)

Query: 209 GEPGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEM 267
             P Y+D   +P P +   K ++   + LK+KEK  W +L+++EK  LYR  F ++F EM
Sbjct: 9   ALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEM 68

Query: 268 NAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
           N  T EWK   G A   +  + L  +   K  ++     T  EE   +  ++M+D++  P
Sbjct: 69  NRSTNEWKTVVGAAMFFIGFTALLLIWE-KHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 127

Query: 328 ITGTASKWDYEKNDWKK 344
           I G ++KWDY+KN+WKK
Sbjct: 128 IQGFSAKWDYDKNEWKK 144

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.5 bits (217), Expect = 1e-21
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 34 PLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVL 93
           LK+KEK  W +L+++EK  LYR  F ++F EMN ST EWK   G A   +  + L  + 
Sbjct: 36 ALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIW 95

Query: 94 MYK 96
             
Sbjct: 96 EKH 98

>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]} Length = 255

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Dimethylarginine dimethylaminohydrolase DDAH
domain: Dimethylarginine dimethylaminohydrolase DDAH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.5 bits (130), Expect = 4e-09
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 89  LTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLI 148
           LT   + K    +A  QH +++  L+   +D+  LPPDE  P+SVF+ED  +  +   +I
Sbjct: 19  LTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAII 78

Query: 149 TKPGNTQRHKE 159
           T+PG   R  E
Sbjct: 79  TRPGAESRRGE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1v54d_	144	Mitochondrial cytochrome c oxidase subunit IV {Cow	100.0
d1v54d_	144	Mitochondrial cytochrome c oxidase subunit IV {Cow	99.91
d1h70a_	255	Dimethylarginine dimethylaminohydrolase DDAH {Pseu	99.86
d1s9ra_	409	Arginine deiminase {Mycoplasma arginini [TaxId: 20	99.56
d1rxxa_	412	Arginine deiminase {Pseudomonas aeruginosa [TaxId:	99.54
d1bwda_	348	L-arginine: inosamine-phosphate amidinotransferase	99.32
d1jdwa_	360	L-arginine: glycine amidinotransferase {Human (Hom	98.94

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-56  Score=383.37  Aligned_cols=136  Identities=35%  Similarity=0.713  Sum_probs=133.5

Q ss_pred             cCCCcccCCCCCCCCCccc-cccccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcchhhHHHHHHHHHH
Q psy945          208 NGEPGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVT  286 (344)
Q Consensus       208 rt~p~y~d~~d~pLpd~rf-~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e~k~vfg~~~v~ig  286 (344)
                      -+.|.|+|++|+|+|++|| .++++++++|+|||||||++||+||||||||+|||+||||+++|+||||.|||++++++|
T Consensus         8 ~~~P~Y~D~~d~P~P~i~~~~e~t~ei~aLreKeKgdWk~LS~eEKkalYrisF~~t~ae~~~p~gewK~v~g~~~~~i~   87 (144)
T d1v54d_           8 YALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIG   87 (144)
T ss_dssp             TTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred             CCCccccCCCCCCCCCchhhhcCCHHHHHHHHHhhCChhhcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHH
Confidence            3789999999999999998 788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCcccccccccccCccCC
Q psy945          287 VSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK  344 (344)
Q Consensus       287 ~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY~~~~wk~  344 (344)
                      +++++++++|.+ +|+|+|+|||+|||+||+||||++++|||||+||+||||||+|||
T Consensus        88 ~s~~i~~~~r~~-v~p~~P~T~~~Ewqeaq~erm~~~~~nPitG~SSkwDYe~~~WKk  144 (144)
T d1v54d_          88 FTALLLIWEKHY-VYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK  144 (144)
T ss_dssp             HHHHHHHHHHHH-TCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred             HHHHHHHHHHHH-cCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCccccccccccccCC
Confidence            999999999999 899999999999999999999999999999999999999999997

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.2e-27  Score=202.05  Aligned_cols=80  Identities=31%  Similarity=0.536  Sum_probs=71.0

Q ss_pred             cCCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeecccc----cChHHHHH
Q psy945           29 HSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYK----VGIDEARR  104 (344)
Q Consensus        29 ~~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~~----vD~d~A~~  104 (344)
                      ..+|++|||||||||++||+||||+|||+||||||+||++|+||||+|+|++|+|+||+++++.|++.    +-....-+
T Consensus        31 t~ei~aLreKeKgdWk~LS~eEKkalYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~~P~T~~~  110 (144)
T d1v54d_          31 SASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEE  110 (144)
T ss_dssp             CHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSH
T ss_pred             CHHHHHHHHHhhCChhhcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCH
Confidence            35789999999999999999999999999999999999999999999999999999999999999883    22444555


Q ss_pred             HHHH
Q psy945          105 QHES  108 (344)
Q Consensus       105 Qh~~  108 (344)
                      ||++
T Consensus       111 Ewqe  114 (144)
T d1v54d_         111 EWVA  114 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Dimethylarginine dimethylaminohydrolase DDAH
domain: Dimethylarginine dimethylaminohydrolase DDAH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=6.4e-24  Score=194.11  Aligned_cols=199  Identities=17%  Similarity=0.180  Sum_probs=144.3

Q ss_pred             ccccChHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhc-cc
Q psy945           94 MYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIK-PK  172 (344)
Q Consensus        94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~-l~  172 (344)
                      ..++|+++|++||++|+++|+++|++|+.+++.+++||+||++|+++++++++|+++|+++.||+|..++.  .++. ..
T Consensus        24 ~~~~d~~~a~~e~~~l~~~L~~~Gv~V~~~~~~~~~pd~vF~rD~~~~~~~~~i~~~~~~~~R~~E~~~~~--~~~~~~~  101 (255)
T d1h70a_          24 LGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAIITRPGAESRRGETEIIE--ETVQRFY  101 (255)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHTTSSCEEEEECCCTTCTTTTCTTTTEEECSSCEEECBCSSGGGTTHHHHHH--HHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCcceeeecceEEEECCCEEEecccchhhhchhhHHH--HHHHHcC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999876  3444 33


Q ss_pred             ccccccccccccCCCCcccccccCCCCeEEEeeeccCCCcccCCC----------CCCCCCccccccccccccccccccC
Q psy945          173 SLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYIDNP----------MFPYPSIRFKAITKELEPLKQKEKG  242 (344)
Q Consensus       173 ~~~i~~~~~~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d~~----------d~pLpd~rf~~~~~~l~~L~ekekg  242 (344)
                      ...+..+..++..+||    +.+.+++..++|+|.||+....+..          ...++...++|+|+.++.+++.   
T Consensus       102 ~~~~~~~~~~~~~eGg----d~~~~~~~~~~g~~~rtn~~g~e~l~~~~~~~~~~~~~~~~~~~~Hld~~~~~~~~~---  174 (255)
T d1h70a_         102 PGKVERIEAPGTVEAG----DIMMVGDHFYIGESARTNAEGARQMIAILEKHGLSGSVVRLEKVLHLKTGLAYLEHN---  174 (255)
T ss_dssp             TTCEEECCTTCCBCGG----GEEEETTEEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEECSSSSSGGGSEEECSTT---
T ss_pred             CCeeeecccccccCCC----cceeeccceeEEeeccchHHHHHHHHHHHHhcCcEEEEecccccccccceeeecCCC---
Confidence            3334444466777777    5556789999999999998777311          1224457789999999999865   


Q ss_pred             CCcCCChHHHHhhchhhccc-cccC--CcCCCcchhhHHHHHHHHHHHH-------HHHHHHHHHhccCCCCCCCCcHHH
Q psy945          243 DWKNLTLEEKKTLYRASFAQ-TFVE--MNAPTGEWKGAFGIAFMVVTVS-------LLTYVLMYKVGIFPEKAETLSEEH  312 (344)
Q Consensus       243 dWk~Ls~eEk~alY~~aF~~-~~pe--~~~~~~e~k~vfg~~~v~ig~~-------~~~~~~~r~~~~~~p~P~tlseew  312 (344)
                               ....++..|.. .+.+  .+..+.++  .+++|++.++-+       --+...++.. |+.+++.+++|.-
T Consensus       175 ---------~~l~~~~~~~~~~~~~~~~i~v~~~e--~~~~N~l~~~~~vi~~~~~~~~~~~L~~~-G~~vi~vd~se~~  242 (255)
T d1h70a_         175 ---------NLLAAGEFVSKPEFQDFNIIEIPEEE--SYAANCIWVNERVIMPAGYPRTREKIARL-GYRVIEVDTSEYR  242 (255)
T ss_dssp             ---------EEEECGGGTTCGGGTTSEEEECCGGG--GGGGCCEEETTEEEEESSCHHHHHHHHTT-TCEEEEECCHHHH
T ss_pred             ---------ceeeCHhHhCchhhcCCccEEeCHHH--hccccEEEECCeEEEcCCCHHHHHHHHHC-CCEEEEechHHHH
Confidence                     34555555553 1111  11222222  366776654432       1124455666 7788888887654


Q ss_pred             H
Q psy945          313 R  313 (344)
Q Consensus       313 k  313 (344)
                      |
T Consensus       243 k  243 (255)
T d1h70a_         243 K  243 (255)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Arginine deiminase
domain: Arginine deiminase
species: Mycoplasma arginini [TaxId: 2094]

Probab=99.56  E-value=4.8e-16  Score=151.13  Aligned_cols=150  Identities=18%  Similarity=0.138  Sum_probs=114.0

Q ss_pred             cccChHHHHHHHHHHHHHHHHCCCeEEEeCC-------------------------------------------------
Q psy945           95 YKVGIDEARRQHESFVALLRDLGLDVIELPP-------------------------------------------------  125 (344)
Q Consensus        95 ~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~-------------------------------------------------  125 (344)
                      +.++.++|++||+.|+++|+++|++|+.+..                                                 
T Consensus        46 ~~~~~~~a~~Ehd~f~~~L~~~Gv~V~~l~~ll~e~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  125 (409)
T d1s9ra_          46 AILESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRE  125 (409)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCEEEEhHHhHHhhhhcCCHHHHHHHHHhhhccccccccHhHHHHHHHHHhhcCCHHH
Confidence            4678999999999999999999999998631                                                 


Q ss_pred             -----------------------CCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhc-----ccccccc
Q psy945          126 -----------------------DEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIK-----PKSLAAS  177 (344)
Q Consensus       126 -----------------------~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~-----l~~~~i~  177 (344)
                                             .+.+||++|+||.++++++++|+++|+.++||+|...++  .+++     .+.+.+.
T Consensus       126 l~~~~~~g~~~~e~~~~~~~~~~~~plpn~~F~RD~~~~~~~gvil~~m~~~~R~~E~~~~~--~i~~~~~~~~~~~~~~  203 (409)
T d1s9ra_         126 LVEIMMAGITKYDLGIEADHELIVDPMPNLYFTRDPFASVGNGVTIHYMRYKVRQRETLFSR--FVFSNHPKLINTPWYY  203 (409)
T ss_dssp             HHHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTSSEEEEBTEEEECCCSSHHHHTTHHHHH--HHHHHCTTTTTCCEEE
T ss_pred             HHHHHhcccchhhcccccCcccccCCCccchhccCceeEEcCcEEECCCCChhhccCHHHHH--HHHHhChhhcCCceEE
Confidence                                   246899999999999999999999999999999998765  4444     1222223


Q ss_pred             cccccccCCCCcccccccCCCCe-EEEeeeccCCCcccCCC----------C------CCCCC-cccccccccccccccc
Q psy945          178 YSAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYIDNP----------M------FPYPS-IRFKAITKELEPLKQK  239 (344)
Q Consensus       178 ~~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d~~----------d------~pLpd-~rf~~~~~~l~~L~ek  239 (344)
                      ....+++.+||    |++.+|+. .++|+|.||++...+..          .      ..+|. ..+.|+|+.++.|++.
T Consensus       204 ~~~~~~~~EGG----D~l~~g~~~~~iG~s~RTn~~gie~L~~~L~~~~~~~~~~v~~~~~p~~~~~mHLDt~f~~l~~~  279 (409)
T d1s9ra_         204 DPSLKLSIEGG----DVFIYNNDTLVVGVSERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKD  279 (409)
T ss_dssp             CGGGCSCCCGG----GEEECSSSEEEEEESSSCCHHHHHHHHHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSS
T ss_pred             ecCCccccccC----cEEEECCcEEEEEECCcCCHHHHHHHHHHhhhcCCceeEEEEeecCCCcccceeeccceeecCCC
Confidence            33456778888    56667854 57999999999875211          1      23444 3367999999999965


Q ss_pred             ccCCCcCCChHHHHhhchhhccc
Q psy945          240 EKGDWKNLTLEEKKTLYRASFAQ  262 (344)
Q Consensus       240 ekgdWk~Ls~eEk~alY~~aF~~  262 (344)
                                  ...+|+..|..
T Consensus       280 ------------~~l~~~~~~~~  290 (409)
T d1s9ra_         280 ------------KFLYSPIANDV  290 (409)
T ss_dssp             ------------EEEECGGGTTT
T ss_pred             ------------eEEEccccccc
Confidence                        56677777663

>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Arginine deiminase
domain: Arginine deiminase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.54  E-value=7.2e-16  Score=150.17  Aligned_cols=151  Identities=19%  Similarity=0.214  Sum_probs=112.0

Q ss_pred             ccccChHHHHHHHHHHHHHHHHCCCeEEEeCC------------------------------------------------
Q psy945           94 MYKVGIDEARRQHESFVALLRDLGLDVIELPP------------------------------------------------  125 (344)
Q Consensus        94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~------------------------------------------------  125 (344)
                      -+.++.++|++||++|+++|+++|++|+.+..                                                
T Consensus        38 ~~~~~~~~a~~eh~~f~~~L~~~Gv~V~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  117 (412)
T d1rxxa_          38 DDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEY  117 (412)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHTTSHHHHHHHHHHHSCHHHHCTTTHHHHHHHHHTSCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCEEEEehHhHHHHhcChHHHHHHHHHhccccccchhHHHHHHHHHHcCCHHHHHHH
Confidence            34789999999999999999999999987620                                                


Q ss_pred             --------------------------------CCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhccc-
Q psy945          126 --------------------------------DEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPK-  172 (344)
Q Consensus       126 --------------------------------~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~-  172 (344)
                                                      .+.+||++|+||.++++++++|+++|+.+.||+|...++  .+++.. 
T Consensus       118 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plpn~~F~RD~~~~i~~gvii~~m~~~~R~~E~~~~~--~i~~~~~  195 (412)
T d1rxxa_         118 LIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTT--AIYKFHP  195 (412)
T ss_dssp             HHHCEEGGGSCSCHHHHHHHHHHHHSCCCCEEECCCGGGGCTTTTEEECSSEEEECCCSSGGGHHHHHHHH--HHHHHCH
T ss_pred             HhccceecccccccccchhhhhhcccccccccCCCchhheeccCCcceecCCEEecCCCChhhcccHHHHH--HHHHhCc
Confidence                                            134899999999999999999999999999999998765  444310 


Q ss_pred             ---cccc-------ccccccccCCCCcccccccCCCCe-EEEeeeccCCCcccCC---------CC-----CCCCC-ccc
Q psy945          173 ---SLAA-------SYSAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYIDN---------PM-----FPYPS-IRF  226 (344)
Q Consensus       173 ---~~~i-------~~~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d~---------~d-----~pLpd-~rf  226 (344)
                         ...+       .....+++.+||    |++.+|+. +++|+|.||+...++.         ..     +++|. ..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~EGG----Dvl~~g~~~l~~g~s~RTn~~gi~~L~~~l~~~~~~~~v~~~~~p~~~~~  271 (412)
T d1rxxa_         196 EFANAEFEIWYGDPDKDHGSSTLEGG----DVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAA  271 (412)
T ss_dssp             HHHTSCCEEEECCTTSCCTTCCCCGG----GEEEEETTEEEEEESSSSCHHHHHHHHHHHHHTTSCSEEEEEECCC--CC
T ss_pred             hhccCccccccCcccccCCccccccc----eEEEeCCcEEEEEecccccHHHHHHHHHHhhhcCceEEeeeccCCCcccc
Confidence               1111       112245677788    55566765 4678999999988731         11     23444 346


Q ss_pred             cccccccccccccccCCCcCCChHHHHhhchhhccc
Q psy945          227 KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQ  262 (344)
Q Consensus       227 ~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~  262 (344)
                      .|+|+.++.|++.            +..+|+..|..
T Consensus       272 ~HLDt~~~~l~~~------------~~l~~~~~~~~  295 (412)
T d1rxxa_         272 MHLDTVFSFCDRD------------LVTVFPEVVKE  295 (412)
T ss_dssp             CCHHHHEEEEETT------------EEEECHHHHTT
T ss_pred             eeccceEEecCCC------------eEEEehhhcCc
Confidence            7999999999964            56777777764

>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate amidinotransferase {Streptomyces griseus [TaxId: 1911]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Amidinotransferase
domain: L-arginine: inosamine-phosphate amidinotransferase
species: Streptomyces griseus [TaxId: 1911]

Probab=99.32  E-value=1.7e-13  Score=127.24  Aligned_cols=198  Identities=12%  Similarity=0.037  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHHHHHHCCCeEEEeCCCCCC------------CCceecCCceEEECCeEEEeCCCCccCcChhhhhHHH
Q psy945           99 IDEARRQHESFVALLRDLGLDVIELPPDEDL------------PESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATR  166 (344)
Q Consensus        99 ~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~~~------------PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~  166 (344)
                      .++|.+||++|+++|+++||+|+.+++....            ++++|+||.++++++++++++|+.+.|+.|..++..-
T Consensus        58 ~~ea~ed~~~l~~~Le~~GV~V~rp~~~~~~~~~~~~~~~~~~~~~~~~RD~~~~ig~~~i~~~~~~~~r~~E~~~~~~~  137 (348)
T d1bwda_          58 LKETEEELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTIIETPMALRSRFLESLAYKDL  137 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEECCCCCCSSSCEECSSCEECCCCSSCGGGSEEESSSEEEECCCSSGGGTTGGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCceEEecccccccccccccccccccccccccccceeEECCEEEEeeccccccccchhhhhhH
Confidence            5889999999999999999999998875443            3689999999999999999999999999998875411


Q ss_pred             --Hhhccccccccc--------------------c-cccccCCCCcccccccCCCCeEEEeeeccCCCcccC--------
Q psy945          167 --ALIKPKSLAASY--------------------S-AASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYID--------  215 (344)
Q Consensus       167 --~~~~l~~~~i~~--------------------~-~~~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d--------  215 (344)
                        .++.. ...+..                    . ......++|    ++..+|+.+++|.|.||++...+        
T Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg----d~~~~g~~i~~g~s~rtn~~g~~~l~~~l~~  212 (348)
T d1bwda_         138 LLEYFAS-GSRWLSAPKPRLTDDSYAPQAPAGERLTDEEPVFDAA----NVLRFGTDLLYLVSDSGNELGAKWLQSAVGD  212 (348)
T ss_dssp             HHHHHTT-TCEEEECCCCCCCGGGBCTTSCTTCSBCSSSCCBCGG----GEEEETTEEEEECBTTBCHHHHHHHHHHHCT
T ss_pred             HHHhccc-CCeeEecCCcccccccccccCCCceeecCCCcEEEcc----eEEEeCCceeeccccccCHHHHHHHhhhccc
Confidence              11111 000000                    0 011122333    56667999999999999987652        


Q ss_pred             -CCCCCCCC-ccccccccccccccccccCCCcCCChHHHHhhchhhccc-cccCCc-----------------CCCcchh
Q psy945          216 -NPMFPYPS-IRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQ-TFVEMN-----------------APTGEWK  275 (344)
Q Consensus       216 -~~d~pLpd-~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~-~~pe~~-----------------~~~~e~k  275 (344)
                       ...+.++. ..+.|+|++++.|++.            ...+|+..+.+ ..|+..                 .......
T Consensus       213 ~~~~~~v~~~~~~~HLD~~f~~l~~g------------l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (348)
T d1bwda_         213 TYTVHPCRKLYASTHVDSTIVPLRPG------------LVLTNPSRVNDENMPDFLRSWENITCPELVDIGFTGDKPHCS  280 (348)
T ss_dssp             TSEEEEESSSCCSSCGGGTEEEEETT------------EEEECTTTCCTTTSCGGGTTSEEEECCCCCCCCCCSSSCSSC
T ss_pred             cceEEEeccccccccccceEEEecCC------------ceEecccccCHHHHHHHHHhcccccccccccCCCCcchhhhh
Confidence             22233444 4456999999999965            45555555542 122211                 1111122


Q ss_pred             hHHHHHHHHHHHH--------HHHHHHHHHhccCCCCCCCCcHHHHH
Q psy945          276 GAFGIAFMVVTVS--------LLTYVLMYKVGIFPEKAETLSEEHRQ  314 (344)
Q Consensus       276 ~vfg~~~v~ig~~--------~~~~~~~r~~~~~~p~P~tlseewk~  314 (344)
                      .-+|+|+++|+=+        --++..++.. |+.+++.++++.++.
T Consensus       281 ~w~~~N~L~I~~~~Vi~~~~n~~~~~~L~~~-Gi~vi~v~~~e~~~~  326 (348)
T d1bwda_         281 VWIGMNLLVVRPDLAVVDRRQTALIRLLEKH-GMNVLPLQLTHSRTL  326 (348)
T ss_dssp             GGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECCTTHHHH
T ss_pred             hceEeEEEEEcCCEEEEeCCCHHHHHHHHHC-CCEEEEechhhhhcc
Confidence            3478887766533        4457888999 999999999988763

>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Amidinotransferase
domain: L-arginine: glycine amidinotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.2e-11  Score=109.77  Aligned_cols=214  Identities=9%  Similarity=-0.015  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHHHCCCeEEEeCCCCC------------CCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHH
Q psy945           99 IDEARRQHESFVALLRDLGLDVIELPPDED------------LPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATR  166 (344)
Q Consensus        99 ~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~~------------~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~  166 (344)
                      .++|++||++|+++|++.||+|+.+++...            .+.++|+||.++|+++++++++|..+.|+.|...+...
T Consensus        57 ~~ea~ee~d~l~~~Le~~GV~V~rp~~~~~~~~~~~~~~~~~~~~~~~~RD~~~~ig~~~i~~~~~~~~r~~E~~~~~~~  136 (360)
T d1jdwa_          57 LKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSI  136 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEECCCCCCTTCEEECSSCEEECCCBCCHHHHEEEEBTEEEECCBSCGGGTTGGGGTHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcEEeeccccccccccchhhhcccCcccccCcceeeeeCCcceeccccccccccchhhhhhH
Confidence            589999999999999999999998876432            25788999999999999999999999999998875421


Q ss_pred             --Hhhcccccccccccc----------------------------cccCCCCcc-cccccCCCCeEEEeeeccCCCcccC
Q psy945          167 --ALIKPKSLAASYSAA----------------------------SAHSNEPVA-KEHFDFFPNREVVGYGFNGEPGYID  215 (344)
Q Consensus       167 --~~~~l~~~~i~~~~~----------------------------~~~~~eG~~-~~~~~~ig~r~~VG~G~rt~p~y~d  215 (344)
                        .++.....-......                            .....++.. .++....+...++|.+.++.+..++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (360)
T d1jdwa_         137 IKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIE  216 (360)
T ss_dssp             HHHHHHTTCEEEECCCCCCCGGGBCTTCCCSSHHHHHHHHHHTCCSBCSSSCCBCGGGEEEETTEEEECCCSSCCHHHHH
T ss_pred             HHHhcccCcceeeccccccccccccccccccccccccccccccceeeeccceeecccceeecccceeeccccccchhHHH
Confidence              111100000000000                            000011111 1233445777899999999987763


Q ss_pred             CC------C-----CCCCCccccccccccccccccccCCCcCCChHHHHhhchhhccc-cccCC----cCCCcchhhHHH
Q psy945          216 NP------M-----FPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQ-TFVEM----NAPTGEWKGAFG  279 (344)
Q Consensus       216 ~~------d-----~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~-~~pe~----~~~~~e~k~vfg  279 (344)
                      ..      .     ....++.+.|+|+.+..+++...---.....++........+.. ..++.    ...+......+|
T Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~~HlD~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  296 (360)
T d1jdwa_         217 WMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLS  296 (360)
T ss_dssp             HHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGG
T ss_pred             HHHhhcccccceeeccccChhhcCccceeEEecCCcEEEeccccchhhhhhhhcCcceEeccccccccccchhhhhhcce
Confidence            21      1     22345567899999999996532111111111111111111111 11110    112222334689


Q ss_pred             HHHHHHHHH--------HHHHHHHHHhccCCCCCCCCcHHHH
Q psy945          280 IAFMVVTVS--------LLTYVLMYKVGIFPEKAETLSEEHR  313 (344)
Q Consensus       280 ~~~v~ig~~--------~~~~~~~r~~~~~~p~P~tlseewk  313 (344)
                      +|+++|+=+        .-++..++.. |+.+++..++|.++
T Consensus       297 ~N~LsI~p~~Vi~~~~n~~~~~~L~~~-Gi~vi~i~~~e~~~  337 (360)
T d1jdwa_         297 MNVLMLDEKRVMVDANEVPIQKMFEKL-GITTIKVNIRNANS  337 (360)
T ss_dssp             GCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECCHHHHT
T ss_pred             eEEEEEcCCEEEEcCCCHHHHHHHHHC-CCEEEEechhhhhc
Confidence            998766644        4457788999 99999999998764