Psyllid ID: psy9486

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSGPTGLD
Secondary Structure (PSIPRED)
ccEEEcEEEcHHHHHHHcccccccccccccEEEEccEEEEcccccEEccccccccccccccEEEEcHHHHHHHHHHHHHcccEEcccccEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEEEEEccccHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccEcHHHHHHHcccHHHccccccccccccEEEEEccccccEccccccccccccccEEEEHHHHHHHHHHHHHHcccEEcccccHHHHHEcccccEEEEEEcccccccccccccccccccEEEEEEEEEHcccccHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
ghilsgavidpialnellpdwkdlgaplntpvqedKFAYLtkskrigipilpgmpmnnhgnYVVRLGHVVKWLGEQAEAmgveiypgipasevlyhgdgsvkgiatgdvgiakdgspkdtFARGMELHAKVTIfaegchghltKSLSSRFnlrgqcmssgptgld
Flexible Loop (DISEMBL)
ghilsgavIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSlssrfnlrgqcmssgptgld
Low Complexity Region (SEG)
GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSGPTGLD
Disordered region (IsUnstruct)
***LSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG**KDTFARGMELHAKVTIFAEGCHGHLTKSL*******************
Disordered Region (DISOPRED)
GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNL*GQCMS**PTGL*
Disordered Region (DISEMBL)
GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC*********
Disordered Region (DISPRO)
*HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSGPTGLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q921G7	616	Electron transfer flavopr	yes	N/A	0.945	0.253	0.717	1e-65
Q6UPE1	616	Electron transfer flavopr	yes	N/A	0.945	0.253	0.717	2e-65
Q2KIG0	617	Electron transfer flavopr	yes	N/A	0.945	0.252	0.717	4e-65
P55931	617	Electron transfer flavopr	yes	N/A	0.945	0.252	0.711	1e-64
Q16134	617	Electron transfer flavopr	yes	N/A	0.945	0.252	0.711	2e-64
Q5RDD3	617	Electron transfer flavopr	yes	N/A	0.945	0.252	0.711	3e-64
Q11190	597	Electron transfer flavopr	yes	N/A	0.969	0.268	0.656	1e-57
Q54XM6	606	Electron transfer flavopr	yes	N/A	0.927	0.252	0.632	1e-53
P94132	570	Probable electron transfe	yes	N/A	0.915	0.264	0.580	1e-45
P87111	632	Probable electron transfe	yes	N/A	0.927	0.242	0.541	5e-42

>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1

 Score =  248 bits (633), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 129/156 (82%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHG
Sbjct: 110 AHTLSGACLDPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHG 169

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK T
Sbjct: 170 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKTT 229

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RG+ELHAKVT+FAEGCHGHL K L  +F+LR  C
Sbjct: 230 FERGLELHAKVTVFAEGCHGHLAKQLYKKFDLRASC 265

Accepts electrons from ETF and reduces ubiquinone.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 5EC: .EC: 5EC: .EC: 1

>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 128/156 (82%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHG
Sbjct: 110 AHTLSGACLDPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHG 169

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK T
Sbjct: 170 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKTT 229

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RG+ELHAKVTIFAEGCHGHL K    +F+LR  C
Sbjct: 230 FERGLELHAKVTIFAEGCHGHLAKQFYKKFDLRASC 265

Accepts electrons from ETF and reduces ubiquinone.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q2KIG0|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1

 Score =  246 bits (628), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 129/156 (82%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP AL EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPRALQELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQKDGAPKTT 230

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYRKFDLRANC 266

Accepts electrons from ETF and reduces ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2

 Score =  244 bits (624), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT 230

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266

Accepts electrons from ETF and reduces ubiquinone.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2

 Score =  244 bits (622), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKAT 230

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266

Accepts electrons from ETF and reduces ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q5RDD3|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1

 Score =  244 bits (622), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 111 AHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 170

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 171 NYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKAT 230

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct: 231 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266

Accepts electrons from ETF and reduces ubiquinone.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q11190|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1 SV=2

 Score =  221 bits (564), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 128/160 (80%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GH LSGAVI+  AL+EL+P+WK+LGAP+   V  +  A LT+S RI +P+LPG+P+ NHG
Sbjct: 93  GHTLSGAVIETRALDELIPNWKELGAPVYQQVTSESIAILTESGRIPVPVLPGVPLANHG 152

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLG VV+WLGEQAEA GVE++P I ASEVLY+ DGSVKGIAT DVGI KDG+PKD 
Sbjct: 153 NYIVRLGKVVQWLGEQAEAAGVEVWPEIAASEVLYNEDGSVKGIATSDVGIGKDGAPKDG 212

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG 160
           FARGME HAK TIFAEGC GHL+K +  +F+LR   M+ G
Sbjct: 213 FARGMEFHAKCTIFAEGCRGHLSKQVLDKFDLRTHAMTYG 252

Accepts electrons from ETF and reduces ubiquinone.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q54XM6|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3 SV=1

 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 126/155 (81%), Gaps = 2/155 (1%)

Query: 2   HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
           HILSGAV+DP ALNEL+PDWK+ GAPL T V++DKF +LT+++ + +P  P + M+N GN
Sbjct: 100 HILSGAVMDPKALNELIPDWKEKGAPLITEVKQDKFYFLTENRSLRLPT-PRL-MHNEGN 157

Query: 62  YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
           Y++ LG+VV+WLGEQAE+MGVE+YP   ASEVLYH +G+V+GIAT D+GIAKDGS    F
Sbjct: 158 YIISLGNVVRWLGEQAESMGVEVYPSFAASEVLYHDNGAVRGIATNDMGIAKDGSLTSNF 217

Query: 122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
            RGMEL+A++TIFAEGC G LTK L  +FNLR +C
Sbjct: 218 TRGMELNARLTIFAEGCRGSLTKGLFEKFNLRDEC 252

Accepts electrons from ETF and reduces ubiquinone.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1

 Score =  182 bits (461), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 114/155 (73%), Gaps = 4/155 (2%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYL---TKSKRIGIPILPGMPMN 57
            HILSGAV++P A+NEL P+WK+ GAPLN PV EDK  +L    KS+     ++P   M+
Sbjct: 54  AHILSGAVLEPRAINELFPNWKEEGAPLNVPVTEDKTYFLMSDEKSQEAPHWMVPKT-MH 112

Query: 58  NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 117
           N GNYV+ LG+VV+WLG++AE + V I+PG  A+E+LYH DG+VKGI TGD+GI KDG P
Sbjct: 113 NDGNYVISLGNVVRWLGQKAEELEVSIFPGFAAAEILYHADGTVKGIQTGDMGIGKDGEP 172

Query: 118 KDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNL 152
              FA G ELHAK T+FAEGC GHL K L ++FNL
Sbjct: 173 THNFAPGYELHAKYTLFAEGCRGHLGKRLINKFNL 207

Accepts electrons from ETF and reduces ubiquinone.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G8.04c PE=3 SV=1

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 2   HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
           H +SGAVI P AL+ELLP+W+D      T V  DK  +L       IP+ P M   NHGN
Sbjct: 134 HSVSGAVIQPTALDELLPNWRDDPPENCTAVTHDKMKFLIPKLHFPIPVPPAM--KNHGN 191

Query: 62  YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
           YV+ L    +WL  +AE  GVEIYP   ASEVLY+ DGSV G+AT D G+   G PKD F
Sbjct: 192 YVMSLAEFTRWLAAKAEEYGVEIYPSFAASEVLYNKDGSVIGVATNDFGVDSKGLPKDNF 251

Query: 122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
            RGM  HA VT+FAEG HG L+KS+  RFNLRG C
Sbjct: 252 ERGMAFHAPVTLFAEGAHGSLSKSIIKRFNLRGNC 286

Accepts electrons from ETF and reduces ubiquinone.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
328720634	602	PREDICTED: electron transfer flavoprotei	0.939	0.257	0.812	5e-72
332018285	606	Electron transfer flavoprotein-ubiquinon	0.945	0.257	0.807	3e-70
380026925	560	PREDICTED: electron transfer flavoprotei	0.945	0.278	0.807	3e-70
66540209	606	PREDICTED: electron transfer flavoprotei	0.945	0.257	0.807	3e-70
307186106	648	Electron transfer flavoprotein-ubiquinon	0.945	0.240	0.801	7e-70
322802783	548	hypothetical protein SINV_12757 [Solenop	0.945	0.284	0.794	3e-69
242005232	604	electron transfer flavoprotein-ubiquinon	0.963	0.263	0.779	2e-68
307197680	556	Electron transfer flavoprotein-ubiquinon	0.945	0.280	0.775	2e-68
383863550	606	PREDICTED: electron transfer flavoprotei	0.945	0.257	0.788	1e-67
332372654	601	unknown [Dendroctonus ponderosae]	0.927	0.254	0.797	6e-67

>gi|328720634|ref|XP_003247087.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328720636|ref|XP_003247088.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like isoform 2 [Acyrthosiphon pisum]

 Score =  275 bits (703), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 141/155 (90%)

Query: 2   HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
           HILSGAV+DPIALNEL P+WKDLGAPL TPV++DKF YLTKS RI IPILPGMPM+NHGN
Sbjct: 98  HILSGAVVDPIALNELFPNWKDLGAPLTTPVKDDKFGYLTKSSRIPIPILPGMPMDNHGN 157

Query: 62  YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
           Y+VRLGH+VKWLGEQAE++GVE+Y G PA+EVLYH DGSVKG+ATGDVGIAKDGSPKD+F
Sbjct: 158 YIVRLGHLVKWLGEQAESLGVEVYAGYPAAEVLYHDDGSVKGVATGDVGIAKDGSPKDSF 217

Query: 122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
            RGMELHAK+TIFAEGCHGHLTK L  +FNLR  C
Sbjct: 218 ERGMELHAKITIFAEGCHGHLTKQLFKKFNLRENC 252

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018285|gb|EGI58890.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Acromyrmex echinatior]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 135/156 (86%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+ KRI IPI  GMPM NHG
Sbjct: 100 GHILSGACLDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEMKRISIPIFKGMPMYNHG 159

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGHVV WLGEQAEA GVEIYPG  A+EVLYH DGSVKG+AT DVGIAKDGSPKDT
Sbjct: 160 NYIVRLGHVVTWLGEQAEAAGVEIYPGYAAAEVLYHEDGSVKGVATNDVGIAKDGSPKDT 219

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RGMELHAK TIFAEGCHGHLTK LS + NLR  C
Sbjct: 220 FERGMELHAKCTIFAEGCHGHLTKQLSKKLNLRKDC 255

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026925|ref|XP_003697189.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like, partial [Apis florea]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 136/156 (87%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+  R+ IPIL GMPM NHG
Sbjct: 100 GHILSGACLDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEKNRLSIPILKGMPMYNHG 159

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGHVV WLGEQAEAMGVEIYPG  A+EVLYH DGSVKGIAT DVGIAKDGSPKDT
Sbjct: 160 NYIVRLGHVVTWLGEQAEAMGVEIYPGYAAAEVLYHEDGSVKGIATNDVGIAKDGSPKDT 219

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RGMELHAK TIFAEGCHGHLTK +S + NLR  C
Sbjct: 220 FERGMELHAKCTIFAEGCHGHLTKQISKKLNLRKDC 255

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66540209|ref|XP_624722.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial isoform 1 [Apis mellifera]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 136/156 (87%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+  R+ IPIL GMPM NHG
Sbjct: 100 GHILSGACLDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEKNRLSIPILKGMPMYNHG 159

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGHVV WLGEQAEAMGVEIYPG  A+EVLYH DGSVKGIAT DVGIAKDGSPKDT
Sbjct: 160 NYIVRLGHVVTWLGEQAEAMGVEIYPGYAAAEVLYHEDGSVKGIATNDVGIAKDGSPKDT 219

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RGMELHAK TIFAEGCHGHLTK +S + NLR  C
Sbjct: 220 FERGMELHAKCTIFAEGCHGHLTKQISKKLNLRKDC 255

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186106|gb|EFN71831.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Camponotus floridanus]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 136/156 (87%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT++KRI IPI  GMPM NHG
Sbjct: 142 GHILSGACLDPIALNELFPNWKELGAPLNTPVTEDKFAFLTENKRISIPIFKGMPMYNHG 201

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGHVV WLGEQAEA GVE+YPG  ASEVLY+ DGSVKG+AT DVGIAKDGSPKDT
Sbjct: 202 NYIVRLGHVVAWLGEQAEATGVEMYPGYAASEVLYYEDGSVKGVATNDVGIAKDGSPKDT 261

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RGMELHAK TIFAEGCHGHLTK LS + NLR  C
Sbjct: 262 FERGMELHAKCTIFAEGCHGHLTKQLSKKLNLRKDC 297

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802783|gb|EFZ22995.1| hypothetical protein SINV_12757 [Solenopsis invicta]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 134/156 (85%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+ KRI IPI  GMPM NHG
Sbjct: 95  GHILSGACLDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEKKRISIPIFKGMPMYNHG 154

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGHVV WLGEQAEA GVEIY G  A+E+LYH DGSVKG+AT DVGIAKDGSPKDT
Sbjct: 155 NYIVRLGHVVTWLGEQAEAAGVEIYAGYAAAEILYHEDGSVKGVATNDVGIAKDGSPKDT 214

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RGMELHAK TIFAEGCHGHLTK LS + NLR  C
Sbjct: 215 FERGMELHAKCTIFAEGCHGHLTKQLSKKLNLRKDC 250

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005232|ref|XP_002423475.1| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Pediculus humanus corporis] gi|212506563|gb|EEB10737.1| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Pediculus humanus corporis]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 137/159 (86%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA IDP ALNEL PDWK+LGAPLNTPV +DKF +LT S RI IPILPGMP+NNHG
Sbjct: 101 GHILSGACIDPKALNELFPDWKELGAPLNTPVVKDKFGFLTASGRISIPILPGMPLNNHG 160

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGH+VKWLG QAE++GVEIYPG  ASE+LYH DGSVKGIAT DVGIAKDGSPK  
Sbjct: 161 NYVVRLGHLVKWLGTQAESLGVEIYPGYAASEILYHEDGSVKGIATNDVGIAKDGSPKAN 220

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSS 159
           F RGMELH+KVTIFAEGCHGHLTK ++ +FNLR  C + 
Sbjct: 221 FERGMELHSKVTIFAEGCHGHLTKMINKKFNLRTDCETQ 259

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197680|gb|EFN78847.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Harpegnathos saltator]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 135/156 (86%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA +DP+ALNEL P+WK+LGAPL TPV EDKFA+LT+ KRI IPI  GMPM NHG
Sbjct: 50  GHILSGACLDPVALNELFPNWKELGAPLTTPVTEDKFAFLTEKKRISIPIFKGMPMYNHG 109

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGHVV WLGEQAEA GVE+YPG  A+EVLYH DGSVKG+AT DVGIAKDGSPK+T
Sbjct: 110 NYIVRLGHVVAWLGEQAEAAGVEMYPGYAAAEVLYHEDGSVKGVATNDVGIAKDGSPKET 169

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RGMELHAK TIFAEGCHGHLTK ++ +FNLR  C
Sbjct: 170 FERGMELHAKCTIFAEGCHGHLTKQVTKKFNLRKDC 205

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863550|ref|XP_003707243.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like [Megachile rotundata]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 133/156 (85%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGA IDPIALNEL P+WK+LGAPLNTPV +DKFA LT+  RI IPIL GMPM NHG
Sbjct: 100 GHILSGACIDPIALNELFPNWKELGAPLNTPVTKDKFALLTEKGRISIPILKGMPMYNHG 159

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NY+VRLGHVV WLGEQAEA GVE+YPG  ASE+LYH DGSVKGIAT DVGIAKDGSPKD 
Sbjct: 160 NYIVRLGHVVAWLGEQAEAAGVELYPGYAASEILYHEDGSVKGIATNDVGIAKDGSPKDN 219

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RGMELHAK TIFAEGCHGHLTK ++ + NLR  C
Sbjct: 220 FERGMELHAKCTIFAEGCHGHLTKQVTKKLNLRKDC 255

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372654|gb|AEE61469.1| unknown [Dendroctonus ponderosae]

 Score =  258 bits (659), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 122/153 (79%), Positives = 136/153 (88%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
           GHILSGAVI P ALNEL+PDW++ GAPL TPV+EDKFA+LT++ RI IP+LPG PM NHG
Sbjct: 98  GHILSGAVIQPTALNELIPDWQEKGAPLKTPVKEDKFAFLTETGRIPIPVLPGTPMYNHG 157

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGHVV+WLGEQAEA+GVEIYPG  ASEVLYH DGSVKGIAT DVGIAKDGSPKD 
Sbjct: 158 NYVVRLGHVVQWLGEQAEALGVEIYPGYAASEVLYHEDGSVKGIATNDVGIAKDGSPKDN 217

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR 153
           F RGMELHAK TIFAEGCHGHL+K + +RF+LR
Sbjct: 218 FERGMELHAKCTIFAEGCHGHLSKQIINRFDLR 250

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
ZFIN|ZDB-GENE-040912-168	617	etfdh "electron-transferring-f	0.939	0.251	0.741	1.1e-62
FB|FBgn0033465	604	Etf-QO "Electron transfer flav	0.921	0.251	0.763	4.8e-62
MGI|MGI:106100	616	Etfdh "electron transferring f	0.939	0.251	0.722	6.2e-62
RGD|735052	616	Etfdh "electron-transferring-f	0.939	0.251	0.722	1.3e-61
UNIPROTKB|Q2KIG0	617	ETFDH "Electron transfer flavo	0.939	0.251	0.722	3.4e-61
UNIPROTKB|F1RW89	616	ETFDH "Electron transfer flavo	0.939	0.251	0.716	7.1e-61
UNIPROTKB|P55931	617	ETFDH "Electron transfer flavo	0.939	0.251	0.716	7.1e-61
UNIPROTKB|J3KND9	570	ETFDH "Electron transfer flavo	0.939	0.271	0.716	9e-61
UNIPROTKB|Q16134	617	ETFDH "Electron transfer flavo	0.939	0.251	0.716	9e-61
UNIPROTKB|E2QTI8	618	ETFDH "Uncharacterized protein	0.939	0.250	0.709	3.1e-60

ZFIN|ZDB-GENE-040912-168 etfdh "electron-transferring-flavoprotein dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 115/155 (74%), Positives = 132/155 (85%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA ++P ALNEL+PDWK+ GAPLNTPV EDKF+ LT+  RI +PILPG+PMNNHGN
Sbjct:   112 HTLSGACLEPTALNELIPDWKERGAPLNTPVTEDKFSILTEKYRIPVPILPGLPMNNHGN 171

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             Y+VRLGH V+WLGEQAE +GVE+YPG  A+EVL+H DGSVKGIAT DVGIAKDGSPKD F
Sbjct:   172 YLVRLGHFVRWLGEQAEELGVELYPGYAAAEVLFHEDGSVKGIATNDVGIAKDGSPKDVF 231

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RGMELHAKVT+F EGCHGHL K L  +FNLR +C
Sbjct:   232 ERGMELHAKVTMFGEGCHGHLAKQLYKQFNLREKC 266

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IMP

FB|FBgn0033465 Etf-QO "Electron transfer flavoprotein-ubiquinone oxidoreductase" [Drosophila melanogaster (taxid:7227)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 116/152 (76%), Positives = 132/152 (86%)

Query:     1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
             GHILSGAVIDPI+LNEL+PDW++ GAPLNTPV +D F++LT S RI IP+  G PM+NHG
Sbjct:   100 GHILSGAVIDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVFKGWPMDNHG 159

Query:    61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
             NYVVRLGH+VKWLG+QAEA+GVEIYPG  ASEVL+H DGSVKGIAT DVGIAK G+PKDT
Sbjct:   160 NYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSVKGIATNDVGIAKSGAPKDT 219

Query:   121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNL 152
             FARGMELHAK TIFAEGC GHLTK +  +F L
Sbjct:   220 FARGMELHAKTTIFAEGCRGHLTKQIMQKFGL 251

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISS;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006119 "oxidative phosphorylation" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IMP

MGI|MGI:106100 Etfdh "electron transferring flavoprotein, dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 112/155 (72%), Positives = 129/155 (83%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHGN
Sbjct:   111 HTLSGACLDPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGN 170

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             Y+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK TF
Sbjct:   171 YIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKTTF 230

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVT+FAEGCHGHL K L  +F+LR  C
Sbjct:   231 ERGLELHAKVTVFAEGCHGHLAKQLYKKFDLRASC 265

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0009055 "electron carrier activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0017133 "mitochondrial electron transfer flavoprotein complex" evidence=TAS

GO:0022900 "electron transport chain" evidence=ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=ISO

GO:0048039 "ubiquinone binding" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=ISO

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|735052 Etfdh "electron-transferring-flavoprotein dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 112/155 (72%), Positives = 128/155 (82%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHGN
Sbjct:   111 HTLSGACLDPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGN 170

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             Y+VRLGH+V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK TF
Sbjct:   171 YIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPKTTF 230

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVTIFAEGCHGHL K    +F+LR  C
Sbjct:   231 ERGLELHAKVTIFAEGCHGHLAKQFYKKFDLRASC 265

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA;ISO;IDA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA;ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=ISO;IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=ISO

GO:0048039 "ubiquinone binding" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA;ISO

UNIPROTKB|Q2KIG0 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 112/155 (72%), Positives = 129/155 (83%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP AL EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGN
Sbjct:   112 HTLSGACLDPRALQELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGN 171

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             Y+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK TF
Sbjct:   172 YIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQKDGAPKTTF 231

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct:   232 ERGLELHAKVTIFAEGCHGHLAKQLYRKFDLRANC 266

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RW89 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 111/155 (71%), Positives = 128/155 (82%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGN
Sbjct:   111 HTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGN 170

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             YVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK TF
Sbjct:   171 YVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTF 230

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct:   231 ERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 265

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

UNIPROTKB|P55931 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 111/155 (71%), Positives = 128/155 (82%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGN
Sbjct:   112 HTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGN 171

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             YVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK TF
Sbjct:   172 YVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTF 231

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct:   232 ERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266

GO:0043783 "oxidoreductase activity, oxidizing metal ions with flavin as acceptor" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048039 "ubiquinone binding" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0044429 "mitochondrial part" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0022900 "electron transport chain" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J3KND9 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 111/155 (71%), Positives = 128/155 (82%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGN
Sbjct:    65 HTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGN 124

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             Y+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK TF
Sbjct:   125 YIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATF 184

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct:   185 ERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 219

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|Q16134 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 111/155 (71%), Positives = 128/155 (82%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGN
Sbjct:   112 HTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGN 171

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             Y+VRLGH+V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK TF
Sbjct:   172 YIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATF 231

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct:   232 ERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 266

GO:0046872 "metal ion binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0022900 "electron transport chain" evidence=IDA

GO:0043783 "oxidoreductase activity, oxidizing metal ions with flavin as acceptor" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0048038 "quinone binding" evidence=IDA

GO:0048039 "ubiquinone binding" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IMP

UNIPROTKB|E2QTI8 ETFDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 110/155 (70%), Positives = 127/155 (81%)

Query:     2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
             H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGN
Sbjct:   112 HTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGN 171

Query:    62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
             Y+VRLGH+V W+GEQAEA+GVEIYPG  A+EVL+H D SVKGIAT DVGI KDG+PK TF
Sbjct:   172 YIVRLGHLVSWMGEQAEALGVEIYPGYAAAEVLFHEDSSVKGIATNDVGIQKDGAPKTTF 231

Query:   122 ARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
              RG+ELHAKVT+FAEGCHGHL K L  +F+LR  C
Sbjct:   232 ERGLELHAKVTVFAEGCHGHLAKQLYKKFDLRANC 266

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P94132	ETFD_ACIAD	1, ., 5, ., 5, ., 1	0.5806	0.9151	0.2649	yes	N/A
Q16134	ETFD_HUMAN	1, ., 5, ., 5, ., 1	0.7115	0.9454	0.2528	yes	N/A
Q54XM6	ETFD_DICDI	1, ., 5, ., 5, ., 1	0.6322	0.9272	0.2524	yes	N/A
Q6UPE1	ETFD_RAT	1, ., 5, ., 5, ., 1	0.7179	0.9454	0.2532	yes	N/A
Q5RDD3	ETFD_PONAB	1, ., 5, ., 5, ., 1	0.7115	0.9454	0.2528	yes	N/A
P55931	ETFD_PIG	1, ., 5, ., 5, ., 1	0.7115	0.9454	0.2528	yes	N/A
Q11190	ETFD_CAEEL	1, ., 5, ., 5, ., 1	0.6562	0.9696	0.2680	yes	N/A
P87111	ETFD_SCHPO	1, ., 5, ., 5, ., 1	0.5419	0.9272	0.2420	yes	N/A
Q921G7	ETFD_MOUSE	1, ., 5, ., 5, ., 1	0.7179	0.9454	0.2532	yes	N/A
Q9HZP5	ETFD_PSEAE	1, ., 5, ., 5, ., 1	0.5126	0.9272	0.2776	yes	N/A
Q2KIG0	ETFD_BOVIN	1, ., 5, ., 5, ., 1	0.7179	0.9454	0.2528	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-19
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	2e-05
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	8e-04

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 27/145 (18%)

Query: 2   HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGN 61
               G  + P AL EL+PD+ +    +   V   +  +  +   I +P+  G        
Sbjct: 41  KPCCGGGLSPRALEELIPDFDEE---IERKVTGARIYFPGEKVAIEVPVGEG-------- 89

Query: 62  YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTF 121
           Y+V      KWL E+AE  G E+YPG   + V+   DG V G+  GD             
Sbjct: 90  YIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD------------- 136

Query: 122 ARGMELHAKVTIFAEGCHGHLTKSL 146
               E+ AKV I A+G +  L + L
Sbjct: 137 ---DEVRAKVVIDADGVNSALARKL 158

Length = 396

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 21/136 (15%)

Query: 13  ALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVK 71
           +L  ++P + D  AP+   +  +K A++T+   + +    G   + +  +Y V       
Sbjct: 54  SLEHIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDA 112

Query: 72  WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAK 130
           WL EQAE  G ++  GI    ++   DG V G+ A GDV                 + AK
Sbjct: 113 WLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDV-----------------IEAK 154

Query: 131 VTIFAEGCHGHLTKSL 146
             I A+G +  L + L
Sbjct: 155 TVILADGVNSILAEKL 170

Length = 428

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)

Query: 26  APLNTPVQEDKFAYLTKSKRIGIPILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMGVEI 84
           AP+   V  +K ++LT+   + +      P +  H +Y V    +  WL EQAE  G + 
Sbjct: 66  APVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF 125

Query: 85  YPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK 144
            PG+    ++  G+  V G+  GD          D       L A V I A+G +  L +
Sbjct: 126 IPGVRVDALVREGN-KVTGVQAGD----------DI------LEANVVILADGVNSMLGR 168

Query: 145 SL 146
           SL
Sbjct: 169 SL 170

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG2415|consensus	621		100.0
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.74
PRK10015	429	oxidoreductase; Provisional	99.72
PRK10157	428	putative oxidoreductase FixC; Provisional	99.71
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.09
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.09
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.06
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.94
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.93
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.65
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.59
PRK08013	400	oxidoreductase; Provisional	98.58
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.55
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.55
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.53
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.51
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.49
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.49
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.47
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.46
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.45
PRK06185	407	hypothetical protein; Provisional	98.45
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.43
PLN02985	514	squalene monooxygenase	98.41
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.39
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.33
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.32
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.3
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.3
PRK09126	392	hypothetical protein; Provisional	98.29
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.26
PRK07045	388	putative monooxygenase; Reviewed	98.24
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.22
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.2
PRK07538	413	hypothetical protein; Provisional	98.2
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.19
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.19
PRK07121	492	hypothetical protein; Validated	98.18
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.17
PRK12839	572	hypothetical protein; Provisional	98.16
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.16
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.15
PRK06126	545	hypothetical protein; Provisional	98.14
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.13
PRK08244	493	hypothetical protein; Provisional	98.13
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.12
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.12
PRK08274	466	tricarballylate dehydrogenase; Validated	98.11
PRK06847	375	hypothetical protein; Provisional	98.11
PRK11445	351	putative oxidoreductase; Provisional	98.1
PRK06996	398	hypothetical protein; Provisional	98.08
PRK07588	391	hypothetical protein; Provisional	98.08
PRK07190	487	hypothetical protein; Provisional	98.07
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.06
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.04
PRK06184	502	hypothetical protein; Provisional	98.04
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.03
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.03
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.02
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.02
PLN02661	357	Putative thiazole synthesis	98.0
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.0
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.0
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.99
PRK08163	396	salicylate hydroxylase; Provisional	97.99
PRK06834	488	hypothetical protein; Provisional	97.98
PTZ00367	567	squalene epoxidase; Provisional	97.97
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.96
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	97.95
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.92
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.92
KOG1298|consensus	509		97.91
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.91
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.9
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.89
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.89
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.88
PRK08275	554	putative oxidoreductase; Provisional	97.88
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.87
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.86
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.85
PLN02697	529	lycopene epsilon cyclase	97.85
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.84
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.84
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.84
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.84
PRK06475	400	salicylate hydroxylase; Provisional	97.82
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.82
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.8
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.79
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.79
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.77
PRK05868	372	hypothetical protein; Validated	97.74
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.74
PRK06753	373	hypothetical protein; Provisional	97.73
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.72
COG0579	429	Predicted dehydrogenase [General function predicti	97.71
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.71
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.71
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.7
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.7
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.67
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.66
PLN02463	447	lycopene beta cyclase	97.65
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.64
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.64
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.64
PRK07804	541	L-aspartate oxidase; Provisional	97.62
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.59
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.58
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.56
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.56
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.56
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.56
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.55
PRK06175	433	L-aspartate oxidase; Provisional	97.54
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.53
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.49
PRK05257	494	malate:quinone oxidoreductase; Validated	97.48
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.47
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.46
PRK08401	466	L-aspartate oxidase; Provisional	97.46
PRK08071	510	L-aspartate oxidase; Provisional	97.46
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.44
PRK07512	513	L-aspartate oxidase; Provisional	97.43
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.43
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.39
PRK07395	553	L-aspartate oxidase; Provisional	97.38
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.36
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.36
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.35
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.32
KOG2844|consensus	856		97.31
PLN02815	594	L-aspartate oxidase	97.3
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.28
KOG2820|consensus	399		97.28
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.26
PRK09077	536	L-aspartate oxidase; Provisional	97.25
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.25
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.21
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.21
PRK08294	634	phenol 2-monooxygenase; Provisional	97.18
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.17
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.16
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.15
KOG4254|consensus	561		97.13
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.11
PRK07236	386	hypothetical protein; Provisional	97.07
COG2081	408	Predicted flavoproteins [General function predicti	97.05
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.02
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	96.97
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.87
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.8
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.78
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	96.75
PLN02612	567	phytoene desaturase	96.74
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.71
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	96.7
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.67
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.62
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.48
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.48
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.47
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.06
KOG0042|consensus	680		96.04
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.04
KOG2404|consensus	477		95.98
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	95.94
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.85
PRK07233	434	hypothetical protein; Provisional	95.84
PRK02106	560	choline dehydrogenase; Validated	95.73
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.72
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.64
KOG2852|consensus	380		95.58
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.52
PRK06116	450	glutathione reductase; Validated	95.5
PRK07208	479	hypothetical protein; Provisional	95.5
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.27
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.24
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.22
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.19
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.16
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.11
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.03
PRK12831	464	putative oxidoreductase; Provisional	94.99
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	94.97
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.96
PLN02487	569	zeta-carotene desaturase	94.94
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.93
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	94.84
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.8
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	94.61
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.42
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.23
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	94.13
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.08
KOG1336|consensus	478		93.92
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	93.7
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.61
PRK06370	463	mercuric reductase; Validated	93.4
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	93.4
PLN02785	587	Protein HOTHEAD	93.25
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.17
PRK14694	468	putative mercuric reductase; Provisional	93.02
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	92.87
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	92.79
PRK07845	466	flavoprotein disulfide reductase; Reviewed	92.77
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.76
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	92.72
KOG2614|consensus	420		92.65
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	92.64
KOG1346|consensus	659		92.64
PRK13748	561	putative mercuric reductase; Provisional	92.59
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	92.57
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	92.54
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	92.44
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	92.41
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	92.26
PRK14727	479	putative mercuric reductase; Provisional	92.24
PLN02507	499	glutathione reductase	92.21
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	92.06
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	91.97
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	91.89
TIGR02053	463	MerA mercuric reductase. This model represents the	91.86
KOG0404|consensus	322		91.83
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	91.74
PRK13984	604	putative oxidoreductase; Provisional	91.72
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.49
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	91.36
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	91.34
KOG2311|consensus	679		91.31
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.28
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	91.08
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	90.88
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	90.63
PRK09897	534	hypothetical protein; Provisional	90.55
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	90.48
PTZ00058	561	glutathione reductase; Provisional	90.28
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	90.05
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	89.84
PLN02546	558	glutathione reductase	89.81
KOG2960|consensus	328		89.68
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	89.57
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	89.53
PRK13512	438	coenzyme A disulfide reductase; Provisional	89.23
PRK10262	321	thioredoxin reductase; Provisional	89.18
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	89.12
KOG2853|consensus	509		88.77
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	88.65
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	88.63
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	88.58
PTZ00052	499	thioredoxin reductase; Provisional	88.4
PRK12416	463	protoporphyrinogen oxidase; Provisional	88.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	87.59
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	87.35
KOG1335|consensus	506		87.28
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	86.79
PRK11883	451	protoporphyrinogen oxidase; Reviewed	86.64
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	86.6
PRK12779	944	putative bifunctional glutamate synthase subunit b	86.31
PRK09564	444	coenzyme A disulfide reductase; Reviewed	85.65
PRK07845	466	flavoprotein disulfide reductase; Reviewed	85.61
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	84.92
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	84.79
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	84.76
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	84.75
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	84.73
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	84.67
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	83.99
PLN02676	487	polyamine oxidase	83.5
PRK12814	652	putative NADPH-dependent glutamate synthase small	83.46
PRK07846	451	mycothione reductase; Reviewed	83.14
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	82.81
PRK12770	352	putative glutamate synthase subunit beta; Provisio	82.73
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	82.1
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	81.76
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	81.55
PRK10262	321	thioredoxin reductase; Provisional	81.39
PRK14989	847	nitrite reductase subunit NirD; Provisional	81.34
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	80.93
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	80.29

>KOG2415|consensus

Probab=100.00  E-value=1e-38  Score=273.94  Aligned_cols=159  Identities=69%  Similarity=1.177  Sum_probs=153.5

Q ss_pred             CceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486           1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM   80 (165)
Q Consensus         1 ~h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~   80 (165)
                      +|+|||+||+|.+|+||+|+|++.++|++++|+++.|+|++++.++++|.+.  .|.++|+|+++.+++.+||.++|+++
T Consensus       119 ghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~fLt~~~~i~vPv~~--pm~NhGNYvv~L~~~v~wLg~kAEe~  196 (621)
T KOG2415|consen  119 GHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFKFLTGKGRISVPVPS--PMDNHGNYVVSLGQLVRWLGEKAEEL  196 (621)
T ss_pred             CceecceeeccchhhhhCcchhhcCCcccccccccceeeeccCceeecCCCc--ccccCCcEEEEHHHHHHHHHHHHHhh
Confidence            6999999999999999999999999999999999999999999888888753  58899999999999999999999999


Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG  160 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~  160 (165)
                      ||||+.+.++.++++++||.|.||.|+|+||+++|.|+++|++|+++.|+++|.|+|++++|+++++++|+|+..++||-
T Consensus       197 GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qt  276 (621)
T KOG2415|consen  197 GVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQT  276 (621)
T ss_pred             CceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy9486         161 P  161 (165)
Q Consensus       161 ~  161 (165)
                      |
T Consensus       277 Y  277 (621)
T KOG2415|consen  277 Y  277 (621)
T ss_pred             e
Confidence            6

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.74  E-value=2.1e-17  Score=142.43  Aligned_cols=128  Identities=31%  Similarity=0.571  Sum_probs=105.3

Q ss_pred             CceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486           1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM   80 (165)
Q Consensus         1 ~h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~   80 (165)
                      .|+++|+.++++.+++++|++...   +++.++...+++++....+..+.        ..+|+++|..||+||+++|+++
T Consensus        40 ~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~~~~~~~~~~~~~~~--------~~~y~v~R~~fd~~La~~A~~a  108 (396)
T COG0644          40 AKPCCGGGLSPRALEELIPDFDEE---IERKVTGARIYFPGEKVAIEVPV--------GEGYIVDRAKFDKWLAERAEEA  108 (396)
T ss_pred             CCccccceechhhHHHhCCCcchh---hheeeeeeEEEecCCceEEecCC--------CceEEEEhHHhhHHHHHHHHHc
Confidence            378899999999999999999863   77899999999985434444432        4489999999999999999999


Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG  160 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~  160 (165)
                      |++++.+++|++++.++++.++++...+                .+++||+||+|+|++|.++++    +|+. ..+|++
T Consensus       109 Gae~~~~~~~~~~~~~~~~~~~~~~~~~----------------~e~~a~~vI~AdG~~s~l~~~----lg~~-~~~~~~  167 (396)
T COG0644         109 GAELYPGTRVTGVIREDDGVVVGVRAGD----------------DEVRAKVVIDADGVNSALARK----LGLK-DRKPED  167 (396)
T ss_pred             CCEEEeceEEEEEEEeCCcEEEEEEcCC----------------EEEEcCEEEECCCcchHHHHH----hCCC-CCChhh
Confidence            9999999999999997556666655543                589999999999999998888    6766 344444

>PRK10015 oxidoreductase; Provisional

Probab=99.72  E-value=9.8e-17  Score=139.98  Aligned_cols=137  Identities=24%  Similarity=0.454  Sum_probs=112.1

Q ss_pred             ceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCC-CCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486           2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGM-PMNNHGNYVVRLGHVVKWLGEQAEAM   80 (165)
Q Consensus         2 h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~i~r~~~d~~L~~~A~~~   80 (165)
                      ++++|+.++.+.+++++|++.. ..|+++.+..+.+++++.++.+.++|.... ...+..+|++.|..||+||.++|++.
T Consensus        43 k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~  121 (429)
T PRK10015         43 KNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA  121 (429)
T ss_pred             ccccCceeecccHHHHcccccc-cCCccccccceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc
Confidence            5688999999999999998864 578889999999999987777777764321 12234689999999999999999999


Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG  160 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~  160 (165)
                      ||+++.+++|+++..+ ++++++|.+.+                .+++|++||+|+|++|.++++    +|+.+..+|++
T Consensus       122 Gv~i~~~~~V~~i~~~-~~~v~~v~~~~----------------~~i~A~~VI~AdG~~s~v~~~----lg~~~~~~~~~  180 (429)
T PRK10015        122 GAQFIPGVRVDALVRE-GNKVTGVQAGD----------------DILEANVVILADGVNSMLGRS----LGMVPASDPHH  180 (429)
T ss_pred             CCEEECCcEEEEEEEe-CCEEEEEEeCC----------------eEEECCEEEEccCcchhhhcc----cCCCcCCCcCe
Confidence            9999999999999875 57888887653                479999999999999988877    77765454443

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.71  E-value=1.3e-16  Score=138.95  Aligned_cols=135  Identities=24%  Similarity=0.461  Sum_probs=110.3

Q ss_pred             ceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCC-CCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486           2 HILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGM-PMNNHGNYVVRLGHVVKWLGEQAEAM   80 (165)
Q Consensus         2 h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~i~r~~~d~~L~~~A~~~   80 (165)
                      |+++|+.++++.+++++|+|.. ..|+++.+..+.++|+++++.+.+++.... ......+|.+.|..||+||.++|++.
T Consensus        43 k~~~gg~l~~~~~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~  121 (428)
T PRK10157         43 KNVTGGRLYAHSLEHIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA  121 (428)
T ss_pred             cccccceechhhHHHHhhhhhh-cCcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC
Confidence            6789999999999999999865 678888888888999988877777775331 12234589999999999999999999


Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMS  158 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~  158 (165)
                      ||+|+++++|+++..+ ++++++|.+.                +.+++|++||+|+|++|.++++    +|+....+|
T Consensus       122 Gv~i~~~~~V~~i~~~-~g~v~~v~~~----------------g~~i~A~~VI~A~G~~s~l~~~----lgl~~~~~~  178 (428)
T PRK10157        122 GAQLITGIRVDNLVQR-DGKVVGVEAD----------------GDVIEAKTVILADGVNSILAEK----LGMAKRVKP  178 (428)
T ss_pred             CCEEECCCEEEEEEEe-CCEEEEEEcC----------------CcEEECCEEEEEeCCCHHHHHH----cCCCCCCCC
Confidence            9999999999999875 5777777643                2479999999999999877766    788754444

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.09  E-value=3.8e-10  Score=90.92  Aligned_cols=99  Identities=24%  Similarity=0.358  Sum_probs=76.4

Q ss_pred             EEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCe
Q psy9486          46 IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM  125 (165)
Q Consensus        46 l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~  125 (165)
                      +.++|.+.    ..+.|+.+..++..+|+.+|.++|++|+..+.|+++++.+++||.||.+++.-+...|.|+|+    .
T Consensus        79 lgi~y~~~----~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDP----l  150 (230)
T PF01946_consen   79 LGIPYEEY----GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDP----L  150 (230)
T ss_dssp             HT---EE-----SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-----E
T ss_pred             CCceeEEe----CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCc----c
Confidence            45555421    245778899999999999999999999999999999987558999999999999999999875    7


Q ss_pred             EEEcCEEEEcccCCcccchHHHhhcCC
Q psy9486         126 ELHAKVTIFAEGCHGHLTKSLSSRFNL  152 (165)
Q Consensus       126 ~i~Ak~VI~A~G~~s~l~~~l~~~~gl  152 (165)
                      .|+||+||+|||..+.+.+.+.++..+
T Consensus       151 ~i~ak~ViDaTGHda~v~~~~~kk~~~  177 (230)
T PF01946_consen  151 TIRAKVVIDATGHDAEVVRVLAKKLKL  177 (230)
T ss_dssp             EEEESEEEE---SSSSSTSHHHHHHHH
T ss_pred             eEEEeEEEeCCCCchHHHHHHHHHhhh
Confidence            899999999999999999888887644

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.09  E-value=9.3e-10  Score=90.44  Aligned_cols=89  Identities=21%  Similarity=0.305  Sum_probs=73.5

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+.|++++..|+.+|.++|+++|++|+++++|.+++.+++++|+||.+++..++.+|.+.+    ...|+|++||+|+|.
T Consensus        96 ~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~----~~~i~Ak~VI~ATG~  171 (257)
T PRK04176         96 DGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVD----PLTIEAKAVVDATGH  171 (257)
T ss_pred             CcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCC----cEEEEcCEEEEEeCC
Confidence            4568899999999999999999999999999999998655599999887644334443322    257999999999999


Q ss_pred             CcccchHHHhhcC
Q psy9486         139 HGHLTKSLSSRFN  151 (165)
Q Consensus       139 ~s~l~~~l~~~~g  151 (165)
                      ++.+.+.+.++..
T Consensus       172 ~a~v~~~l~~~~~  184 (257)
T PRK04176        172 DAEVVSVLARKGP  184 (257)
T ss_pred             CcHHHHHHHHHcC
Confidence            9999999888764

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.06  E-value=2.4e-09  Score=87.92  Aligned_cols=90  Identities=18%  Similarity=0.275  Sum_probs=75.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .|+.++.++.++|.++|+++||++++++.|.+++.++++ +|.||.+++..++.+|.+.+    ...++|++||+|+|..
T Consensus        94 ~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d----~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292        94 YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVD----PLTQRSRVVVDATGHD  169 (254)
T ss_pred             eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCC----CEEEEcCEEEEeecCC
Confidence            456789999999999999999999999999999986432 79999998755555554332    2589999999999999


Q ss_pred             cccchHHHhhcCCCC
Q psy9486         140 GHLTKSLSSRFNLRG  154 (165)
Q Consensus       140 s~l~~~l~~~~gl~~  154 (165)
                      +.+.+.+.+++++..
T Consensus       170 a~v~~~l~~~~~~~~  184 (254)
T TIGR00292       170 AEIVAVCAKKIVLED  184 (254)
T ss_pred             chHHHHHHHHcCccc
Confidence            999999999998765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.94  E-value=4.9e-09  Score=84.77  Aligned_cols=88  Identities=23%  Similarity=0.373  Sum_probs=78.3

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+-|+.+-..|..-|+.+|.++|++|+..+.|+++++.++.+|+||.+++.-+...|.++|+    ..++|++||+|||.
T Consensus       101 ~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDP----l~i~a~~VvDaTGH  176 (262)
T COG1635         101 DGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDP----LTIRAKAVVDATGH  176 (262)
T ss_pred             CceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCc----ceeeEEEEEeCCCC
Confidence            45678888999999999999999999999999999997444899999999888888988875    68999999999999


Q ss_pred             CcccchHHHhhc
Q psy9486         139 HGHLTKSLSSRF  150 (165)
Q Consensus       139 ~s~l~~~l~~~~  150 (165)
                      .+.+.+.+.++-
T Consensus       177 da~v~~~~~kr~  188 (262)
T COG1635         177 DAEVVSFLAKRI  188 (262)
T ss_pred             chHHHHHHHHhc
Confidence            999988777665

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.93  E-value=4.1e-09  Score=93.03  Aligned_cols=71  Identities=25%  Similarity=0.382  Sum_probs=59.9

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|.++|..||++|.+.|++.||+++.+ +|.++..+++|.|++|++.+               |.+++||++|+|+|.
T Consensus       146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~  209 (454)
T PF04820_consen  146 NYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGR  209 (454)
T ss_dssp             S-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGG
T ss_pred             CeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCc
Confidence            45899999999999999999999999988 58888887789999999986               578999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      .+.|.++
T Consensus       210 ~s~L~~~  216 (454)
T PF04820_consen  210 RSLLARK  216 (454)
T ss_dssp             G-CCCCC
T ss_pred             cchhhHh
Confidence            9999887

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.65  E-value=1.5e-07  Score=77.57  Aligned_cols=76  Identities=26%  Similarity=0.388  Sum_probs=63.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+..++-..|.++|.+.++++|++|+++++|++|..+ +++|.||++.+               | +++|+.||+|+|.
T Consensus       139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~---------------g-~i~ad~vV~a~G~  201 (358)
T PF01266_consen  139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD---------------G-EIRADRVVLAAGA  201 (358)
T ss_dssp             TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETT---------------E-EEEECEEEE--GG
T ss_pred             cccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccc---------------c-ccccceeEecccc
Confidence            44667899999999999999999999999999999996 78899999987               3 5999999999999


Q ss_pred             CcccchHHHhhcCCCC
Q psy9486         139 HGHLTKSLSSRFNLRG  154 (165)
Q Consensus       139 ~s~l~~~l~~~~gl~~  154 (165)
                      ++   .++.+..++..
T Consensus       202 ~s---~~l~~~~~~~~  214 (358)
T PF01266_consen  202 WS---PQLLPLLGLDL  214 (358)
T ss_dssp             GH---HHHHHTTTTSS
T ss_pred             cc---eeeeecccccc
Confidence            86   66777777643

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.59  E-value=6.4e-07  Score=75.62  Aligned_cols=70  Identities=21%  Similarity=0.254  Sum_probs=58.7

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+|.++|..++++|.+.+++.| ++|+.+++|+++..+ ++.+ .|.+.+               |..+.||+||.|+|
T Consensus        98 ~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~~~~vi~adG  160 (385)
T TIGR01988        98 ALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDD---------------GQQLRARLLVGADG  160 (385)
T ss_pred             ccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECC---------------CCEEEeeEEEEeCC
Confidence            45799999999999999999998 999999999999875 4443 355543               35799999999999


Q ss_pred             CCcccchH
Q psy9486         138 CHGHLTKS  145 (165)
Q Consensus       138 ~~s~l~~~  145 (165)
                      .+|.+.++
T Consensus       161 ~~S~vr~~  168 (385)
T TIGR01988       161 ANSKVRQL  168 (385)
T ss_pred             CCCHHHHH
Confidence            99988766

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08013 oxidoreductase; Provisional

Probab=98.58  E-value=6.7e-07  Score=77.03  Aligned_cols=73  Identities=14%  Similarity=0.173  Sum_probs=59.5

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+|++.|..++++|.+++.+. |++++.+++|+++..++ +.| .|...+               |.+++|++||.|+|.
T Consensus       104 ~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~---------------g~~i~a~lvVgADG~  166 (400)
T PRK08013        104 LGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEA-FLTLKD---------------GSMLTARLVVGADGA  166 (400)
T ss_pred             cEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeE-EEEEcC---------------CCEEEeeEEEEeCCC
Confidence            479999999999999999985 89999999999998753 322 344433               357999999999999


Q ss_pred             CcccchHHHhhcCCC
Q psy9486         139 HGHLTKSLSSRFNLR  153 (165)
Q Consensus       139 ~s~l~~~l~~~~gl~  153 (165)
                      +|.+.++    +++.
T Consensus       167 ~S~vR~~----~~~~  177 (400)
T PRK08013        167 NSWLRNK----ADIP  177 (400)
T ss_pred             CcHHHHH----cCCC
Confidence            9999777    5654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.55  E-value=9.8e-07  Score=75.71  Aligned_cols=72  Identities=21%  Similarity=0.225  Sum_probs=53.7

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccC-CCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK-DGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~-~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +++|..||++|.++|.+.|++++.+ +|+++..+ ++. +.|.+.+ |.+. +|+       ..+++|++||+|+|++|.
T Consensus        88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~-~~v~~~~-~~~~~~~~-------~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERD-RDG-VTLTYRT-PKKGAGGE-------KGSVEADVVIGADGANSP  156 (388)
T ss_pred             eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCe-EEEEEEe-ccccCCCc-------ceEEEeCEEEECCCCCcH
Confidence            5999999999999999999999865 69998775 343 3454432 1000 111       147999999999999998


Q ss_pred             cchH
Q psy9486         142 LTKS  145 (165)
Q Consensus       142 l~~~  145 (165)
                      ++++
T Consensus       157 v~r~  160 (388)
T TIGR02023       157 VAKE  160 (388)
T ss_pred             HHHH
Confidence            8776

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.55  E-value=1.1e-06  Score=76.15  Aligned_cols=76  Identities=14%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEc-CCCcEEEEEEcccc-ccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVG-IAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g-~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ++++|..||++|.++|.++||+++.++ +.++... ..+.+.+|+..... -...|+.       .+++|++||+|+|++
T Consensus        88 ~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~-------~~i~a~~VIgADG~~  159 (398)
T TIGR02028        88 GMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTR-------CTLEVDAVIGADGAN  159 (398)
T ss_pred             eeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCc-------cEEEeCEEEECCCcc
Confidence            469999999999999999999998885 7776542 12344556543200 0001221       379999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.++++
T Consensus       160 S~v~~~  165 (398)
T TIGR02028       160 SRVAKE  165 (398)
T ss_pred             hHHHHH
Confidence            988877

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.53  E-value=6.2e-07  Score=72.58  Aligned_cols=76  Identities=28%  Similarity=0.356  Sum_probs=60.1

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..++.++|..|+++|.+.+++.|++++.+++|+++..+ ++.+ .+.+.+      +        +.+++|++||+|+|.
T Consensus        83 ~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~-~~~~~~------~--------~~~~~a~~vv~a~G~  146 (295)
T TIGR02032        83 ELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRV-VVIVRG------G--------EGTVTAKIVIGADGS  146 (295)
T ss_pred             CcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEE-EEEEcC------c--------cEEEEeCEEEECCCc
Confidence            44789999999999999999999999999999999886 3433 233322      0        247999999999999


Q ss_pred             CcccchHHHhhcCCCC
Q psy9486         139 HGHLTKSLSSRFNLRG  154 (165)
Q Consensus       139 ~s~l~~~l~~~~gl~~  154 (165)
                      +|.+.++    +++..
T Consensus       147 ~s~~~~~----~~~~~  158 (295)
T TIGR02032       147 RSIVAKK----LGLRK  158 (295)
T ss_pred             chHHHHh----cCCCC
Confidence            9977665    66643

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.51  E-value=3.6e-07  Score=75.36  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=57.9

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ...+++.|..|+++|.+.|++.|++|..++++.++..+. +.+..+....    .+|+.       .+++||+||+|+|.
T Consensus       103 ~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~----~~g~~-------~~i~adlvVgADG~  170 (356)
T PF01494_consen  103 PYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDG----EDGEE-------ETIEADLVVGADGA  170 (356)
T ss_dssp             SCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEET----CTCEE-------EEEEESEEEE-SGT
T ss_pred             CcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccc----cCCce-------eEEEEeeeecccCc
Confidence            457889999999999999999999999999999998863 4444333322    23321       37999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.++
T Consensus       171 ~S~vR~~  177 (356)
T PF01494_consen  171 HSKVRKQ  177 (356)
T ss_dssp             T-HHHHH
T ss_pred             ccchhhh
Confidence            9998877

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.49  E-value=1.7e-06  Score=73.34  Aligned_cols=74  Identities=20%  Similarity=0.325  Sum_probs=59.6

Q ss_pred             CCcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+|.++|..|++.|.+.+.+ .|++++.+++|+++..+ ++.+ .|.+.+               |..+.||+||+|+|
T Consensus        97 ~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~ad~vV~AdG  159 (382)
T TIGR01984        97 ALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYV-RVTLDN---------------GQQLRAKLLIAADG  159 (382)
T ss_pred             ccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeE-EEEECC---------------CCEEEeeEEEEecC
Confidence            347999999999999999999 49999999999999875 3433 355543               34799999999999


Q ss_pred             CCcccchHHHhhcCCC
Q psy9486         138 CHGHLTKSLSSRFNLR  153 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~  153 (165)
                      .+|.+.+.    +++.
T Consensus       160 ~~S~vr~~----l~~~  171 (382)
T TIGR01984       160 ANSKVREL----LSIP  171 (382)
T ss_pred             CChHHHHH----cCCC
Confidence            99977666    5654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.49  E-value=1.3e-06  Score=74.67  Aligned_cols=69  Identities=22%  Similarity=0.232  Sum_probs=58.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      -+|+++|..+.+.|.+.+++.|++++++++|+++..+ ++.+ .|.+.+               |..+.|+.||+|+|.+
T Consensus       106 ~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~a~~vV~AdG~~  168 (392)
T PRK08773        106 LGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRV-RLRLDD---------------GRRLEAALAIAADGAA  168 (392)
T ss_pred             CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeE-EEEECC---------------CCEEEeCEEEEecCCC
Confidence            4799999999999999999999999999999999875 3443 355543               3479999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.+.+.
T Consensus       169 S~vr~~  174 (392)
T PRK08773        169 STLREL  174 (392)
T ss_pred             chHHHh
Confidence            977665

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.47  E-value=2.3e-06  Score=73.48  Aligned_cols=94  Identities=14%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC
Q psy9486          35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD  114 (165)
Q Consensus        35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~  114 (165)
                      ..+.+.+.++...++|.......+.-+|++.|..+.+.|.+.+++.|++|+.++++.++..++ +.+ .|.+.+      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~------  151 (405)
T PRK05714         80 SEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG-DDW-LLTLAD------  151 (405)
T ss_pred             eeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeE-EEEECC------
Confidence            455555555433344432111112347899999999999999999999999999999997753 333 355543      


Q ss_pred             CCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486         115 GSPKDTFARGMELHAKVTIFAEGCHGHLTKS  145 (165)
Q Consensus       115 g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~  145 (165)
                               |.++.|+.||+|+|.+|.+.+.
T Consensus       152 ---------g~~~~a~~vVgAdG~~S~vR~~  173 (405)
T PRK05714        152 ---------GRQLRAPLVVAADGANSAVRRL  173 (405)
T ss_pred             ---------CCEEEeCEEEEecCCCchhHHh
Confidence                     3579999999999999988666

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.46  E-value=3.1e-06  Score=72.30  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+|++.|..|++.|.+++.+.+ ++++++++++++..++ +.| .|.+.+               + .++||+||.|+|.
T Consensus        97 ~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v-~v~~~~---------------~-~~~adlvIgADG~  158 (374)
T PRK06617         97 LGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN-DYS-IIKFDD---------------K-QIKCNLLIICDGA  158 (374)
T ss_pred             cEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeE-EEEEcC---------------C-EEeeCEEEEeCCC
Confidence            4799999999999999999986 9999999999998753 433 355543               3 7999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.+.
T Consensus       159 ~S~vR~~  165 (374)
T PRK06617        159 NSKVRSH  165 (374)
T ss_pred             CchhHHh
Confidence            9999776

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.45  E-value=3e-06  Score=72.86  Aligned_cols=82  Identities=21%  Similarity=0.205  Sum_probs=65.5

Q ss_pred             eEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEc-cccccCCCCCCCCCC
Q psy9486          45 RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATG-DVGIAKDGSPKDTFA  122 (165)
Q Consensus        45 ~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~-~~g~~~~g~~~~~~~  122 (165)
                      .+.++....  .....++++.+..+-..|.+++.+.+ |+++.++.|+.+..+ ++.|. |... +              
T Consensus        84 ~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~d--------------  145 (387)
T COG0654          84 LLIFDAAEL--GRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFD--------------  145 (387)
T ss_pred             eEEeccccc--CCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCC--------------
Confidence            455554322  12455899999999999999999987 999999999999986 45666 6665 3              


Q ss_pred             cCeEEEcCEEEEcccCCcccchH
Q psy9486         123 RGMELHAKVTIFAEGCHGHLTKS  145 (165)
Q Consensus       123 ~g~~i~Ak~VI~A~G~~s~l~~~  145 (165)
                       |.+++|++||.|+|.+|.+.+.
T Consensus       146 -G~~~~a~llVgADG~~S~vR~~  167 (387)
T COG0654         146 -GETLDADLLVGADGANSAVRRA  167 (387)
T ss_pred             -CcEEecCEEEECCCCchHHHHh
Confidence             4589999999999999988777

>PRK06185 hypothetical protein; Provisional

Probab=98.45  E-value=4.9e-06  Score=71.35  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=62.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .++.+.+..+.++|.+++++. |++++.+++|.++..+ ++.+++|.+..    .+|+        .+++|+.||+|+|.
T Consensus       101 ~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~----~~g~--------~~i~a~~vI~AdG~  167 (407)
T PRK06185        101 YIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART----PDGP--------GEIRADLVVGADGR  167 (407)
T ss_pred             cEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc----CCCc--------EEEEeCEEEECCCC
Confidence            467899999999999999874 9999999999999886 67787877653    1221        37999999999999


Q ss_pred             CcccchHHHhhcCCCC
Q psy9486         139 HGHLTKSLSSRFNLRG  154 (165)
Q Consensus       139 ~s~l~~~l~~~~gl~~  154 (165)
                      +|.+.+.    +|+..
T Consensus       168 ~S~vr~~----~gi~~  179 (407)
T PRK06185        168 HSRVRAL----AGLEV  179 (407)
T ss_pred             chHHHHH----cCCCc
Confidence            9987665    66654

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.43  E-value=2.3e-06  Score=75.59  Aligned_cols=75  Identities=20%  Similarity=0.229  Sum_probs=52.9

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC-CcEEEEEEccccc-cCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGI-AKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~-~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +++|..||++|.++|+++|++++.+ .+.++..+.+ +..+.|.+.+... +.+|+       +.+++|++||+|+|++|
T Consensus       128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~v~a~~VIgADG~~S  199 (450)
T PLN00093        128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT-------PKTLEVDAVIGADGANS  199 (450)
T ss_pred             EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC-------ccEEEeCEEEEcCCcch
Confidence            5999999999999999999999876 5777765321 2223444432100 00122       24799999999999999


Q ss_pred             ccchH
Q psy9486         141 HLTKS  145 (165)
Q Consensus       141 ~l~~~  145 (165)
                      .+++.
T Consensus       200 ~vrr~  204 (450)
T PLN00093        200 RVAKD  204 (450)
T ss_pred             HHHHH
Confidence            88887

>PLN02985 squalene monooxygenase

Probab=98.41  E-value=2.5e-06  Score=76.58  Aligned_cols=99  Identities=20%  Similarity=0.320  Sum_probs=68.8

Q ss_pred             ceEEEEcCCceEEecCCCCC--CCCCCCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccc
Q psy9486          35 DKFAYLTKSKRIGIPILPGM--PMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGI  111 (165)
Q Consensus        35 ~~~~~~~~~~~l~i~~~~~~--~~~~~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~  111 (165)
                      .++.+....+.+.++|....  ......++++.|..|.+.|.++|.+. ||+++.+ ++.+++.+ ++.++||+...   
T Consensus       113 ~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~---  187 (514)
T PLN02985        113 TGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKN---  187 (514)
T ss_pred             ccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEc---
Confidence            34444443344455654211  11123468999999999999999886 7999865 68888765 67788888753   


Q ss_pred             cCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486         112 AKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus       112 ~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                       .+|+.       .+++|++||+|+|.+|.+.+++
T Consensus       188 -~dG~~-------~~~~AdLVVgADG~~S~vR~~l  214 (514)
T PLN02985        188 -SAGEE-------TTALAPLTVVCDGCYSNLRRSL  214 (514)
T ss_pred             -CCCCE-------EEEECCEEEECCCCchHHHHHh
Confidence             34432       3578999999999999987774

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.39  E-value=4.5e-06  Score=72.93  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=69.4

Q ss_pred             eeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCC---CEEecCCceeEEEEc-----CCCcEEEE
Q psy9486          33 QEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYH-----GDGSVKGI  104 (165)
Q Consensus        33 ~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~G---v~i~~~~~v~~i~~~-----~~g~V~GV  104 (165)
                      ....+.+........++|.... ....-+|+++|..+.+.|.+++++.+   ++++.+++|.++..+     +++..+.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v  162 (437)
T TIGR01989        84 PFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHI  162 (437)
T ss_pred             ceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEE
Confidence            3345555554432234332211 11234799999999999999999875   999999999999762     12322345


Q ss_pred             EEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCC
Q psy9486         105 ATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus       105 ~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~  153 (165)
                      .+.+               |.+++|++||.|+|++|.+.+.    +|+.
T Consensus       163 ~~~~---------------g~~i~a~llVgADG~~S~vR~~----~gi~  192 (437)
T TIGR01989       163 TLSD---------------GQVLYTKLLIGADGSNSNVRKA----ANID  192 (437)
T ss_pred             EEcC---------------CCEEEeeEEEEecCCCChhHHH----cCCC
Confidence            5543               4689999999999999999777    5554

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.33  E-value=3.6e-06  Score=71.88  Aligned_cols=73  Identities=21%  Similarity=0.333  Sum_probs=59.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+|.++|..|++.|.+++.+.|++++.+++|+++..+ ++.+ .|.+.+               |..+.||+||.|+|.+
T Consensus       104 ~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~ad~vI~AdG~~  166 (403)
T PRK07333        104 FAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSD---------------GSVLEARLLVAADGAR  166 (403)
T ss_pred             cEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEEcCCCC
Confidence            3678999999999999999999999999999999875 3433 355543               3579999999999999


Q ss_pred             cccchHHHhhcCCC
Q psy9486         140 GHLTKSLSSRFNLR  153 (165)
Q Consensus       140 s~l~~~l~~~~gl~  153 (165)
                      |.+.+.    +|+.
T Consensus       167 S~vr~~----~g~~  176 (403)
T PRK07333        167 SKLREL----AGIK  176 (403)
T ss_pred             hHHHHH----cCCC
Confidence            987665    5654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.32  E-value=4.2e-06  Score=71.37  Aligned_cols=70  Identities=21%  Similarity=0.211  Sum_probs=57.7

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+|++.|..|++.|.+++++. |++++.+++|+++..+ ++. +.|.+.+               |.+++|++||+|+|
T Consensus       104 ~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG  166 (391)
T PRK08020        104 ELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DDG-WELTLAD---------------GEEIQAKLVIGADG  166 (391)
T ss_pred             ccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCe-EEEEECC---------------CCEEEeCEEEEeCC
Confidence            4479999999999999999887 9999999999999765 333 3455543               35799999999999


Q ss_pred             CCcccchH
Q psy9486         138 CHGHLTKS  145 (165)
Q Consensus       138 ~~s~l~~~  145 (165)
                      .+|.+.+.
T Consensus       167 ~~S~vR~~  174 (391)
T PRK08020        167 ANSQVRQM  174 (391)
T ss_pred             CCchhHHH
Confidence            99988666

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.30  E-value=5.5e-06  Score=70.42  Aligned_cols=74  Identities=14%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ...|.+.|..|++.|.++|++.| ++++ +++|+++..+ ++.+ .|.+.+               |.+++|+.||+|+|
T Consensus       103 ~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~a~~vI~adG  164 (388)
T PRK07608        103 QLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLAD---------------GQVLRADLVVGADG  164 (388)
T ss_pred             CCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECC---------------CCEEEeeEEEEeCC
Confidence            44789999999999999999998 9999 9999999765 3433 466654               34799999999999


Q ss_pred             CCcccchHHHhhcCCCC
Q psy9486         138 CHGHLTKSLSSRFNLRG  154 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~~  154 (165)
                      .+|.+.+.    +++..
T Consensus       165 ~~S~vr~~----~~~~~  177 (388)
T PRK07608        165 AHSWVRSQ----AGIKA  177 (388)
T ss_pred             CCchHHHh----cCCCc
Confidence            99987665    56543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.30  E-value=8.2e-06  Score=69.39  Aligned_cols=69  Identities=28%  Similarity=0.340  Sum_probs=56.4

Q ss_pred             CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+|.+.|..+++.|.+.+.+ .|++++.+++|+++..+ ++.+ .|.+.+               |..+.|+.||+|+|.
T Consensus       105 ~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~~~a~~vI~AdG~  167 (395)
T PRK05732        105 LGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDD---------------GETLTGRLLVAADGS  167 (395)
T ss_pred             cEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECC---------------CCEEEeCEEEEecCC
Confidence            36899999999999999877 58999999999999765 3433 366654               347999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.+.
T Consensus       168 ~S~vr~~  174 (395)
T PRK05732        168 HSALREA  174 (395)
T ss_pred             ChhhHHh
Confidence            9987665

>PRK09126 hypothetical protein; Provisional

Probab=98.29  E-value=1.3e-05  Score=68.31  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      -+|.+.|..+.+.|.+++.+ .|++|+.+++|+++..+ ++. +.|.+.+               |.++.|++||+|+|.
T Consensus       103 ~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~---------------g~~~~a~~vI~AdG~  165 (392)
T PRK09126        103 LGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLAN---------------GRRLTARLLVAADSR  165 (392)
T ss_pred             ceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcC---------------CCEEEeCEEEEeCCC
Confidence            47899999999999999865 79999999999999775 343 3465543               358999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.+.
T Consensus       166 ~S~vr~~  172 (392)
T PRK09126        166 FSATRRQ  172 (392)
T ss_pred             CchhhHh
Confidence            9988776

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.26  E-value=1.3e-05  Score=68.98  Aligned_cols=70  Identities=17%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .-+|++.+..+.+.|.+++.+. |++++.+++|+++..++ +. +.|.+.+               |..++|++||+|+|
T Consensus       103 ~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~-~~v~~~~---------------g~~~~a~lvIgADG  165 (405)
T PRK08850        103 DLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE-SE-AWLTLDN---------------GQALTAKLVVGADG  165 (405)
T ss_pred             ccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-Ce-EEEEECC---------------CCEEEeCEEEEeCC
Confidence            3479999999999999999885 79999999999998753 33 3455543               35799999999999


Q ss_pred             CCcccchH
Q psy9486         138 CHGHLTKS  145 (165)
Q Consensus       138 ~~s~l~~~  145 (165)
                      .+|.+.++
T Consensus       166 ~~S~vR~~  173 (405)
T PRK08850        166 ANSWLRRQ  173 (405)
T ss_pred             CCChhHHH
Confidence            99988777

>PRK07045 putative monooxygenase; Reviewed

Probab=98.24  E-value=5.5e-06  Score=70.78  Aligned_cols=70  Identities=14%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.+.|..+.++|.+++.+ .|++++++++|+++..++++.++.|.+.+               |.++.|++||.|+|.+|
T Consensus       101 ~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------------g~~~~~~~vIgADG~~S  165 (388)
T PRK07045        101 ILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD---------------GERVAPTVLVGADGARS  165 (388)
T ss_pred             EEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC---------------CCEEECCEEEECCCCCh
Confidence            357899999999999865 78999999999999886566666777754               45899999999999999


Q ss_pred             ccchHH
Q psy9486         141 HLTKSL  146 (165)
Q Consensus       141 ~l~~~l  146 (165)
                      .+.+++
T Consensus       166 ~vR~~~  171 (388)
T PRK07045        166 MIRDDV  171 (388)
T ss_pred             HHHHHh
Confidence            997754

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.22  E-value=5.4e-06  Score=68.64  Aligned_cols=63  Identities=24%  Similarity=0.324  Sum_probs=55.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++-..+...|++.|++.|++++.+++|+++..+ ++++++|.+.+               | .++|+.||+|+|+|+
T Consensus       131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPS---------------G-DVQADQVVLAAGAWA  193 (337)
T ss_pred             CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCC---------------C-EEECCEEEEcCChhh
Confidence            346678899999999999999999999999999885 67788898865               3 799999999999997

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.20  E-value=7.3e-06  Score=71.35  Aligned_cols=74  Identities=19%  Similarity=0.304  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS  145 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~  145 (165)
                      -..+.+.|.+++++.||+|+++++|++|+.+++++|+||++..    .+|+.       ..+.||.||+|+|.++.. ++
T Consensus       129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~n-~~  196 (439)
T TIGR01813       129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGSN-KE  196 (439)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCCC-HH
Confidence            3568889999999999999999999999996568999998764    22321       257899999999999975 66


Q ss_pred             HHhhcC
Q psy9486         146 LSSRFN  151 (165)
Q Consensus       146 l~~~~g  151 (165)
                      |.++|.
T Consensus       197 m~~~~~  202 (439)
T TIGR01813       197 MIAKYD  202 (439)
T ss_pred             HHHHhC
Confidence            777663

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07538 hypothetical protein; Provisional

Probab=98.20  E-value=2.3e-05  Score=67.71  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCC-EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          61 NYVVRLGHVVKWLGEQAEA-MGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~-~Gv-~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .|.+.|..|++.|.++|.+ .|. .|+.+++|+++..++++.++.+....     +|+       +.+++||+||.|+|.
T Consensus        96 ~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~-----~g~-------~~~~~adlvIgADG~  163 (413)
T PRK07538         96 QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRA-----GGD-------LVSVRGDVLIGADGI  163 (413)
T ss_pred             eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccC-----CCc-------cceEEeeEEEECCCC
Confidence            5789999999999999976 585 69999999999876555444433221     222       247999999999999


Q ss_pred             CcccchHH
Q psy9486         139 HGHLTKSL  146 (165)
Q Consensus       139 ~s~l~~~l  146 (165)
                      +|.+.+.+
T Consensus       164 ~S~vR~~l  171 (413)
T PRK07538        164 HSAVRAQL  171 (413)
T ss_pred             CHHHhhhh
Confidence            99987764

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.19  E-value=1.1e-05  Score=71.93  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=65.2

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++-..+...|++.|++.|++|++.++|+++..+ +++++||++.+.   .+|+       ..+|+|+.||.|+|+|+  
T Consensus       124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa--  190 (516)
T TIGR03377       124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWA--  190 (516)
T ss_pred             EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcch--
Confidence            6788899999999999999999999999999885 688889887531   1221       14799999999999997  


Q ss_pred             chHHHhhcCCCCCCCC
Q psy9486         143 TKSLSSRFNLRGQCMS  158 (165)
Q Consensus       143 ~~~l~~~~gl~~~~~~  158 (165)
                       .++.+..|+..++.|
T Consensus       191 -~~l~~~~g~~~~i~p  205 (516)
T TIGR03377       191 -GRIAEYAGLDIRMFP  205 (516)
T ss_pred             -HHHHHhcCCCCceec
Confidence             677777776544444

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.19  E-value=2e-05  Score=67.60  Aligned_cols=72  Identities=15%  Similarity=0.203  Sum_probs=54.6

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+|++.+..+.+.|.+++.+. ||+++++++|+++..++ +.+ .|.+.+     ++.       ..+++||+||+|+|.
T Consensus       114 ~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~-~v~~~~-----~~~-------~~~i~adlvIgADG~  179 (415)
T PRK07364        114 LGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAA-TVTLEI-----EGK-------QQTLQSKLVVAADGA  179 (415)
T ss_pred             cEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-Cee-EEEEcc-----CCc-------ceEEeeeEEEEeCCC
Confidence            357777678999999998885 79999999999997753 433 344432     111       136999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.+.
T Consensus       180 ~S~vR~~  186 (415)
T PRK07364        180 RSPIRQA  186 (415)
T ss_pred             CchhHHH
Confidence            9988776

>PRK07121 hypothetical protein; Validated

Probab=98.18  E-value=9.6e-06  Score=71.93  Aligned_cols=73  Identities=23%  Similarity=0.380  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccch
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTK  144 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~  144 (165)
                      -..+.+.|.+++++.|++|+++++|++|+.+++|+|+||++..     +|+.       ..|+| |.||+|+|..+.. +
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~-------~~i~a~k~VVlAtGg~~~N-~  242 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGET-------VAIRARKGVVLAAGGFAMN-R  242 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcE-------EEEEeCCEEEECCCCcCcC-H
Confidence            3468889999999999999999999999986567999998853     2322       36899 9999999999875 5


Q ss_pred             HHHhhcC
Q psy9486         145 SLSSRFN  151 (165)
Q Consensus       145 ~l~~~~g  151 (165)
                      +|.++|.
T Consensus       243 em~~~~~  249 (492)
T PRK07121        243 EMVARYA  249 (492)
T ss_pred             HHHHHhC
Confidence            6666664

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.17  E-value=1.4e-05  Score=68.58  Aligned_cols=76  Identities=20%  Similarity=0.260  Sum_probs=60.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++-..+.+.|++.+++.|++|+++++|+++..+ ++++++|++.+                .+++|+.||+|+|.|+  
T Consensus       197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~----------------~~~~a~~VV~a~G~~~--  257 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGG----------------GVITADAYVVALGSYS--  257 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCC----------------cEEeCCEEEECCCcch--
Confidence            3455688899999999999999999999999875 56777887764                3799999999999997  


Q ss_pred             chHHHhhcCCCCCCCC
Q psy9486         143 TKSLSSRFNLRGQCMS  158 (165)
Q Consensus       143 ~~~l~~~~gl~~~~~~  158 (165)
                       .++.+.+|+..+..|
T Consensus       258 -~~l~~~~g~~~pi~p  272 (416)
T PRK00711        258 -TALLKPLGVDIPVYP  272 (416)
T ss_pred             -HHHHHHhCCCcccCC
Confidence             566666665543433

>PRK12839 hypothetical protein; Provisional

Probab=98.16  E-value=2.2e-05  Score=71.40  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEE-EcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMEL-HAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i-~Ak~VI~A~G~~  139 (165)
                      ...+.-..+...|.++|++.||+|++++.|++|+.+++|+|+||...+    .+|+        ..+ .++.||+|+|.+
T Consensus       208 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~--------~~i~aak~VVLAtGGf  275 (572)
T PRK12839        208 MQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGA--------VTVEATRGVVLATGGF  275 (572)
T ss_pred             cccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCc--------EEEEeCCEEEEcCCCc
Confidence            344556778889999999999999999999999986578999998754    3342        234 458999999999


Q ss_pred             cccchHHHhhc
Q psy9486         140 GHLTKSLSSRF  150 (165)
Q Consensus       140 s~l~~~l~~~~  150 (165)
                      +... .+.+++
T Consensus       276 ~~n~-~~~~~~  285 (572)
T PRK12839        276 PNDV-DRRKEL  285 (572)
T ss_pred             ccCH-HHHHHh
Confidence            8763 334443

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.16  E-value=6.1e-06  Score=71.04  Aligned_cols=68  Identities=26%  Similarity=0.408  Sum_probs=53.3

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ......+...|.+.++++|++|++++.|++|+.+ +++|+||...+.   .+|+.       ..|+|+.||+|+|..+.
T Consensus       137 ~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~-------~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  137 LGGGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEF-------VRIKAKAVILATGGFGG  204 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEE-------EEEEESEEEE----BGG
T ss_pred             cccHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeE-------EEEeeeEEEeccCcccc
Confidence            3456678899999999999999999999999996 789999988831   24443       37999999999999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.15  E-value=1.9e-05  Score=67.79  Aligned_cols=97  Identities=18%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC
Q psy9486          35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD  114 (165)
Q Consensus        35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~  114 (165)
                      ..+.+........++|...  ......+++.+..+.+.|++++++.|++++++++++++... ++..+.|....     +
T Consensus        73 ~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~-----~  144 (392)
T PRK08243         73 DGIELRFDGRRHRIDLTEL--TGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEK-----D  144 (392)
T ss_pred             CcEEEEECCEEEEeccccc--cCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEc-----C
Confidence            3444444444455665422  11223456678899999999999999999999999998652 23334455532     3


Q ss_pred             CCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486         115 GSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus       115 g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      |+.       .+++||+||.|+|.+|.+.+++
T Consensus       145 G~~-------~~i~ad~vVgADG~~S~vR~~~  169 (392)
T PRK08243        145 GEE-------HRLDCDFIAGCDGFHGVSRASI  169 (392)
T ss_pred             CeE-------EEEEeCEEEECCCCCCchhhhc
Confidence            322       3799999999999999997774

>PRK06126 hypothetical protein; Provisional

Probab=98.14  E-value=1.3e-05  Score=71.86  Aligned_cols=74  Identities=18%  Similarity=0.186  Sum_probs=57.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+.+++..+.+.|.+.|++ .|++|+++++|+++..+ ++.|+ +.+.+.   .+|+.       .+++||+||+|+|+
T Consensus       119 ~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~~---~~g~~-------~~i~ad~vVgADG~  186 (545)
T PRK06126        119 LPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADGVT-ATVEDL---DGGES-------LTIRADYLVGCDGA  186 (545)
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCeEE-EEEEEC---CCCcE-------EEEEEEEEEecCCc
Confidence            35789999999999999987 48999999999999886 44444 333220   12322       37999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.++
T Consensus       187 ~S~VR~~  193 (545)
T PRK06126        187 RSAVRRS  193 (545)
T ss_pred             chHHHHh
Confidence            9988766

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.13  E-value=1.9e-05  Score=71.74  Aligned_cols=71  Identities=17%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccchH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS  145 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~~  145 (165)
                      ..+...|.+.+++.||+|+++++|++|+.+ +|+|+||.+..     +|..       ..|.| |.||+|+|..+.. .+
T Consensus       217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~~-------~~i~a~kaVILAtGGf~~n-~e  282 (564)
T PRK12845        217 QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGRE-------VTVTARRGVVLAAGGFDHD-ME  282 (564)
T ss_pred             HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCcE-------EEEEcCCEEEEecCCcccc-HH
Confidence            346678899999999999999999999975 79999997754     2322       25777 6899999999988 67


Q ss_pred             HHhhcC
Q psy9486         146 LSSRFN  151 (165)
Q Consensus       146 l~~~~g  151 (165)
                      |.++|.
T Consensus       283 m~~~y~  288 (564)
T PRK12845        283 MRWKFQ  288 (564)
T ss_pred             HHHHhC
Confidence            777775

>PRK08244 hypothetical protein; Provisional

Probab=98.13  E-value=1.6e-05  Score=70.34  Aligned_cols=71  Identities=24%  Similarity=0.326  Sum_probs=56.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.+.+..+.+.|.+.+++.|++++.+++++++..+ ++.|. |.+.+    .+|.        .+++|++||+|+|.+|
T Consensus        94 ~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g~--------~~i~a~~vVgADG~~S  159 (493)
T PRK08244         94 TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVE-VVVRG----PDGL--------RTLTSSYVVGADGAGS  159 (493)
T ss_pred             EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEE-EEEEe----CCcc--------EEEEeCEEEECCCCCh
Confidence            578999999999999999999999999999999875 34332 33332    1221        3799999999999999


Q ss_pred             ccchH
Q psy9486         141 HLTKS  145 (165)
Q Consensus       141 ~l~~~  145 (165)
                      .+.++
T Consensus       160 ~vR~~  164 (493)
T PRK08244        160 IVRKQ  164 (493)
T ss_pred             HHHHh
Confidence            88766

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.12  E-value=1.7e-05  Score=71.56  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=64.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++-..+...|+..|++.|++|++.++|+++..+ +++|+||++.+.   .+|+       +.+|+|+.||.|+|+|+  
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa--  211 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWG--  211 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhH--
Confidence            5777888889999999999999999999999885 688999987531   1221       14799999999999997  


Q ss_pred             chHHHhhcCCCCCCCC
Q psy9486         143 TKSLSSRFNLRGQCMS  158 (165)
Q Consensus       143 ~~~l~~~~gl~~~~~~  158 (165)
                       .++.+..++..++.|
T Consensus       212 -~~l~~~~g~~~~i~p  226 (546)
T PRK11101        212 -QHIAEYADLRIRMFP  226 (546)
T ss_pred             -HHHHHhcCCCCceee
Confidence             667666676544444

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.12  E-value=1.3e-05  Score=73.02  Aligned_cols=70  Identities=23%  Similarity=0.374  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCcccchHHH
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s~l~~~l~  147 (165)
                      +...|.+.+++.|++|+++++|++|+.+++|+|+||....     +|..       ..|+|+ .||+|+|..+.. ++|.
T Consensus       215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~-------~~i~a~~aVilAtGGf~~N-~em~  281 (584)
T PRK12835        215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRT-------LRIGARRGVILATGGFDHD-MDWR  281 (584)
T ss_pred             HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcE-------EEEEeceeEEEecCcccCC-HHHH
Confidence            4556778889999999999999999997679999998753     3432       368997 699999999987 6677


Q ss_pred             hhcC
Q psy9486         148 SRFN  151 (165)
Q Consensus       148 ~~~g  151 (165)
                      ++|.
T Consensus       282 ~~y~  285 (584)
T PRK12835        282 KEYL  285 (584)
T ss_pred             HHhC
Confidence            7764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.11  E-value=2.5e-05  Score=68.60  Aligned_cols=67  Identities=27%  Similarity=0.355  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK  144 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~  144 (165)
                      -..+...|.+++++.|++|+++++|++|+.+ +++|+||.+..    .+|+.       ..++|+.||+|+|..+....
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~----~~g~~-------~~i~a~~VIlAtGg~~~n~~  196 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGS----AAGGA-------ERIRAKAVVLAAGGFESNRE  196 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEc----cCCce-------EEEECCEEEECCCCCCCCHH
Confidence            3568889999999999999999999999985 68999998753    23332       47999999999999887643

>PRK06847 hypothetical protein; Provisional

Probab=98.11  E-value=2.6e-05  Score=65.92  Aligned_cols=70  Identities=16%  Similarity=0.218  Sum_probs=57.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..+.+.|..+.+.|.+.+++.|++|+.+++|+++..+ ++. +.|.+.+               |.++.||.||+|+|.+
T Consensus       100 ~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~ad~vI~AdG~~  162 (375)
T PRK06847        100 GGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSD---------------GTTGRYDLVVGADGLY  162 (375)
T ss_pred             CcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcC---------------CCEEEcCEEEECcCCC
Confidence            3567899999999999999999999999999999775 343 3455543               3579999999999999


Q ss_pred             cccchHH
Q psy9486         140 GHLTKSL  146 (165)
Q Consensus       140 s~l~~~l  146 (165)
                      |.+.+++
T Consensus       163 s~~r~~l  169 (375)
T PRK06847        163 SKVRSLV  169 (375)
T ss_pred             cchhhHh
Confidence            9997764

>PRK11445 putative oxidoreductase; Provisional

Probab=98.10  E-value=1.4e-05  Score=67.82  Aligned_cols=71  Identities=18%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.++|..||++|.+. .+.||+++.++.++++..++++  +.|.+.+     +|+.       .+++|++||+|+|.+|
T Consensus        93 ~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~-----~g~~-------~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         93 YINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDG--YHVIFRA-----DGWE-------QHITARYLVGADGANS  157 (351)
T ss_pred             cccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCE--EEEEEec-----CCcE-------EEEEeCEEEECCCCCc
Confidence            3579999999999985 5789999999999999875333  2344422     2211       2699999999999999


Q ss_pred             ccchHH
Q psy9486         141 HLTKSL  146 (165)
Q Consensus       141 ~l~~~l  146 (165)
                      .+++++
T Consensus       158 ~vr~~l  163 (351)
T PRK11445        158 MVRRHL  163 (351)
T ss_pred             HHhHHh
Confidence            987763

>PRK06996 hypothetical protein; Provisional

Probab=98.08  E-value=3.8e-05  Score=66.08  Aligned_cols=73  Identities=25%  Similarity=0.299  Sum_probs=54.3

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|+++|..+++.|.+++++.|++++.+++++++..+. ..| -|...+    .+|        +..++|++||.|+|.
T Consensus       107 ~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v-~v~~~~----~~g--------~~~i~a~lvIgADG~  172 (398)
T PRK06996        107 ALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGV-TLALGT----PQG--------ARTLRARIAVQAEGG  172 (398)
T ss_pred             cCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeE-EEEECC----CCc--------ceEEeeeEEEECCCC
Confidence            348999999999999999999999999999999996643 222 233332    112        147999999999997


Q ss_pred             C-cccchH
Q psy9486         139 H-GHLTKS  145 (165)
Q Consensus       139 ~-s~l~~~  145 (165)
                      . |++.+.
T Consensus       173 ~~s~~r~~  180 (398)
T PRK06996        173 LFHDQKAD  180 (398)
T ss_pred             CchHHHHH
Confidence            4 544443

>PRK07588 hypothetical protein; Provisional

Probab=98.08  E-value=3.5e-05  Score=65.91  Aligned_cols=67  Identities=16%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.+.|..|.+.|.+.+. .|++|+++++|+++..+ ++.|. |.+.+               |..+.|++||.|+|.+|
T Consensus        97 ~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         97 FTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEH-RDGVR-VTFER---------------GTPRDFDLVIGADGLHS  158 (391)
T ss_pred             eEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEEC-CCeEE-EEECC---------------CCEEEeCEEEECCCCCc
Confidence            468999999999988654 48999999999999875 44433 55543               35789999999999999


Q ss_pred             ccchH
Q psy9486         141 HLTKS  145 (165)
Q Consensus       141 ~l~~~  145 (165)
                      .+.+.
T Consensus       159 ~vR~~  163 (391)
T PRK07588        159 HVRRL  163 (391)
T ss_pred             cchhh
Confidence            99665

>PRK07190 hypothetical protein; Provisional

Probab=98.07  E-value=2.2e-05  Score=69.97  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.+.+..+.+.|.+++++.|++|+.+++|+++..++ +.|+ |.+.+               |.+++|++||+|+|++|
T Consensus       103 ~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~-v~~~~---------------g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        103 FLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL-TTLSN---------------GERIQSRYVIGADGSRS  165 (487)
T ss_pred             eEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE-EEECC---------------CcEEEeCEEEECCCCCH
Confidence            4678899999999999999999999999999998864 3332 23332               34799999999999999


Q ss_pred             ccchHHHhhcCCCC
Q psy9486         141 HLTKSLSSRFNLRG  154 (165)
Q Consensus       141 ~l~~~l~~~~gl~~  154 (165)
                      .+.++    +|+.-
T Consensus       166 ~vR~~----lgi~f  175 (487)
T PRK07190        166 FVRNH----FNVPF  175 (487)
T ss_pred             HHHHH----cCCCc
Confidence            88777    67653

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.06  E-value=1.5e-05  Score=72.29  Aligned_cols=66  Identities=20%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++.+.+++|+.+++|+|+||...+.   .+|+.       ..|+||.||+|||..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICI---ETGET-------VYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEc---CCCcE-------EEEecCeEEECCCCcccc
Confidence            5688899999999999999999999999865799999987431   24543       379999999999999865

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.04  E-value=4.1e-05  Score=65.82  Aligned_cols=75  Identities=21%  Similarity=0.206  Sum_probs=57.9

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++-..+...|++.|++.|++++.+++|+++..++++++++|++.+               | .+.|+.||+|+|+++. 
T Consensus       179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~-  241 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS-  241 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH-
Confidence            3455677888999999999999999999999764457788888875               3 7999999999888873 


Q ss_pred             chHHHhhcCCCCCC
Q psy9486         143 TKSLSSRFNLRGQC  156 (165)
Q Consensus       143 ~~~l~~~~gl~~~~  156 (165)
                        .+.+.+++..+.
T Consensus       242 --~l~~~~g~~~~~  253 (407)
T TIGR01373       242 --VVAAMAGFRLPI  253 (407)
T ss_pred             --HHHHHcCCCCCc
Confidence              344446665333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06184 hypothetical protein; Provisional

Probab=98.04  E-value=2.7e-05  Score=69.12  Aligned_cols=72  Identities=15%  Similarity=0.132  Sum_probs=56.9

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .++++.+..+.+.|.+.+.+.|++|+.+++|+++..++ +.|+ |.+..    .++        +..++|++||.|+|++
T Consensus       102 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~----~~~--------~~~i~a~~vVgADG~~  167 (502)
T PRK06184        102 LPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA-DGVT-ARVAG----PAG--------EETVRARYLVGADGGR  167 (502)
T ss_pred             cceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEE-EEEEe----CCC--------eEEEEeCEEEECCCCc
Confidence            36789999999999999999999999999999998763 4343 22211    011        3579999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.+.++
T Consensus       168 S~vR~~  173 (502)
T PRK06184        168 SFVRKA  173 (502)
T ss_pred             hHHHHh
Confidence            988776

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.03  E-value=3.1e-05  Score=66.25  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=56.0

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      +|++.+..+...|.+++++ .|++++.+++|+++..++ +.+ -|.+.+               |.+++|++||+|+|.+
T Consensus       104 g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~-~v~~~~---------------g~~~~~~lvIgADG~~  166 (384)
T PRK08849        104 GYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGN-RVTLES---------------GAEIEAKWVIGADGAN  166 (384)
T ss_pred             EEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeE-EEEECC---------------CCEEEeeEEEEecCCC
Confidence            6999998999999999877 479999999999998863 333 255543               3589999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.+.+.
T Consensus       167 S~vR~~  172 (384)
T PRK08849        167 SQVRQL  172 (384)
T ss_pred             chhHHh
Confidence            999777

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.03  E-value=2.4e-05  Score=70.81  Aligned_cols=71  Identities=27%  Similarity=0.493  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccchH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS  145 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~~  145 (165)
                      ..+...|.++|++.||+|+++++|++|+.+ +++|+||.+..     +|+.       .+|.| +.||+|+|..+.. ++
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~g~~-------~~i~A~~aVIlAtGG~~~N-~e  273 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-----DGRE-------VLIRARRGVLLASGGFGHN-AE  273 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-----CCeE-------EEEEecceEEEecCCccCC-HH
Confidence            456778899999999999999999999986 79999998853     3332       36899 5799999999887 66


Q ss_pred             HHhhcC
Q psy9486         146 LSSRFN  151 (165)
Q Consensus       146 l~~~~g  151 (165)
                      |.++|.
T Consensus       274 m~~~~~  279 (557)
T PRK12844        274 MRKRYQ  279 (557)
T ss_pred             HHHHhc
Confidence            666664

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.02  E-value=2.8e-05  Score=66.28  Aligned_cols=74  Identities=16%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|.+.+..+.+.|.+++.+.|...+.+++|.++..+ ++.+. |.+.+               |..++||.||+|+|.
T Consensus       103 ~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~-v~~~~---------------g~~~~a~~vI~AdG~  165 (388)
T PRK07494        103 AFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDEVT-VTLAD---------------GTTLSARLVVGADGR  165 (388)
T ss_pred             ccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEE-EEECC---------------CCEEEEeEEEEecCC
Confidence            34799999999999999999875333789999999875 34433 55543               357999999999999


Q ss_pred             CcccchHHHhhcCCC
Q psy9486         139 HGHLTKSLSSRFNLR  153 (165)
Q Consensus       139 ~s~l~~~l~~~~gl~  153 (165)
                      +|.+.+.    +++.
T Consensus       166 ~S~vr~~----~g~~  176 (388)
T PRK07494        166 NSPVREA----AGIG  176 (388)
T ss_pred             CchhHHh----cCCC
Confidence            9988666    5654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.02  E-value=3.6e-05  Score=67.07  Aligned_cols=68  Identities=24%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS  145 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~  145 (165)
                      ..+.+.|.++|++.|++|+++++|++|+.++ +++|+||.+..     +         +..+.||.||+|+|..+.. +.
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-----~---------~~~i~ak~VIlAtGG~~~n-~~  187 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV-----G---------THRITTQALVLAAGGLGAN-RD  187 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC-----C---------cEEEEcCEEEEcCCCcccC-HH
Confidence            4578899999999999999999999998863 57899988743     1         2479999999999998877 44


Q ss_pred             HHhh
Q psy9486         146 LSSR  149 (165)
Q Consensus       146 l~~~  149 (165)
                      +.++
T Consensus       188 ~~~~  191 (432)
T TIGR02485       188 WLRK  191 (432)
T ss_pred             HHHh
Confidence            4444

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02661 Putative thiazole synthesis

Probab=98.00  E-value=6.6e-05  Score=64.75  Aligned_cols=88  Identities=19%  Similarity=0.250  Sum_probs=61.5

Q ss_pred             CcEEEEh--HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486          60 GNYVVRL--GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE  136 (165)
Q Consensus        60 ~~~~i~r--~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~  136 (165)
                      ++|.+.+  ..+.+.|.+++.+ .|++++..+.|.+++.+ +++|.||.+++..+..++....-..| ..|+||.||+||
T Consensus       163 dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp-~~I~AkaVVlAT  240 (357)
T PLN02661        163 ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDP-NVMEAKVVVSSC  240 (357)
T ss_pred             CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccce-eEEECCEEEEcC
Confidence            3455542  4566678887765 89999999999999996 78999999876433233332110111 369999999999


Q ss_pred             cCCcccchHHHhh
Q psy9486         137 GCHGHLTKSLSSR  149 (165)
Q Consensus       137 G~~s~l~~~l~~~  149 (165)
                      |..+.+.....++
T Consensus       241 Gh~g~~ga~~~~~  253 (357)
T PLN02661        241 GHDGPFGATGVKR  253 (357)
T ss_pred             CCCCcchhhhhhc
Confidence            9998776655444

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.00  E-value=2.1e-05  Score=72.03  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.++|++.||+|++++.+++|+.+++|+|+||...+.   .+|+.       ..|.||.||+|+|..+.+
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSM---EDGSI-------HRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEEC---CCCeE-------EEEECCcEEEeCCCCccc
Confidence            4788899999999999999999999999844789999976431   24433       378999999999998754

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.00  E-value=4.5e-05  Score=69.26  Aligned_cols=71  Identities=18%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccchH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKS  145 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~~  145 (165)
                      ..+...|.+++++.||+|+++++|++++.+ +++|+||.+..     +|+.       ..|.| +.||+|+|..+.. ++
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~~-------~~i~A~~~VVlAtGg~~~n-~e  286 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGVR-------RRIRARGGVVLATGGFNRH-PQ  286 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCeE-------EEEEccceEEECCCCcccC-HH
Confidence            357788999999999999999999999886 79999998864     2322       35886 7899999999988 67


Q ss_pred             HHhhcC
Q psy9486         146 LSSRFN  151 (165)
Q Consensus       146 l~~~~g  151 (165)
                      |+++|.
T Consensus       287 m~~~~~  292 (578)
T PRK12843        287 LRRELL  292 (578)
T ss_pred             HHHHhC
Confidence            777774

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.99  E-value=6.5e-05  Score=68.28  Aligned_cols=68  Identities=34%  Similarity=0.445  Sum_probs=55.3

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHL  142 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l  142 (165)
                      +.-..|.+.|.+.|++.||+|+++++|++|+.+ +++|+||++..     ++..       ..++| +.||+|+|.++..
T Consensus       214 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-----~~~~-------~~i~a~k~VVlAtGg~~~n  280 (581)
T PRK06134        214 VNGNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVET-----PGGL-------QEIRARKGVVLAAGGFPHD  280 (581)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-----CCcE-------EEEEeCCEEEEcCCCcccC
Confidence            444568889999999999999999999999986 78999998754     1211       26899 9999999999876


Q ss_pred             ch
Q psy9486         143 TK  144 (165)
Q Consensus       143 ~~  144 (165)
                      ..
T Consensus       281 ~~  282 (581)
T PRK06134        281 PA  282 (581)
T ss_pred             HH
Confidence            43

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.99  E-value=3.4e-05  Score=65.83  Aligned_cols=69  Identities=16%  Similarity=0.111  Sum_probs=56.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+++.|..+.+.|.+++.+.| ++++++++|+++..+ ++.+. |.+.+               |.++.|++||+|+|.+
T Consensus       103 ~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vV~AdG~~  165 (396)
T PRK08163        103 YAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQ---------------GNRWTGDALIGCDGVK  165 (396)
T ss_pred             EEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcC---------------CCEEecCEEEECCCcC
Confidence            468999999999999998875 999999999999875 34333 55443               3579999999999999


Q ss_pred             cccchHH
Q psy9486         140 GHLTKSL  146 (165)
Q Consensus       140 s~l~~~l  146 (165)
                      |.+.+++
T Consensus       166 S~~r~~~  172 (396)
T PRK08163        166 SVVRQSL  172 (396)
T ss_pred             hHHHhhc
Confidence            9886664

>PRK06834 hypothetical protein; Provisional

Probab=97.98  E-value=4.3e-05  Score=68.05  Aligned_cols=69  Identities=22%  Similarity=0.316  Sum_probs=57.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .++.+.+..+.+.|.+.+++.|++|+.+++|+++..++ +.| .|.+.+               |.+++|++||.|+|.+
T Consensus        93 ~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v-~v~~~~---------------g~~i~a~~vVgADG~~  155 (488)
T PRK06834         93 YGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD-TGV-DVELSD---------------GRTLRAQYLVGCDGGR  155 (488)
T ss_pred             ccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeE-EEEECC---------------CCEEEeCEEEEecCCC
Confidence            36788999999999999999999999999999998863 333 344432               3479999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.+.+.
T Consensus       156 S~vR~~  161 (488)
T PRK06834        156 SLVRKA  161 (488)
T ss_pred             CCcHhh
Confidence            988666

>PTZ00367 squalene epoxidase; Provisional

Probab=97.97  E-value=4.9e-05  Score=69.16  Aligned_cols=104  Identities=13%  Similarity=0.223  Sum_probs=68.3

Q ss_pred             ceEEEEcCC-ceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHH---HHCCCEEecCCceeEEEEcCC---CcEEEEEEc
Q psy9486          35 DKFAYLTKS-KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA---EAMGVEIYPGIPASEVLYHGD---GSVKGIATG  107 (165)
Q Consensus        35 ~~~~~~~~~-~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A---~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~  107 (165)
                      .++++...+ ..+.+++..     ...++.+.|..|.+.|.+++   ...||+++++ +|++++.++.   .++.||+..
T Consensus       103 ~~~~v~~~~G~~~~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~  176 (567)
T PTZ00367        103 FGYVVFDHKGKQVKLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYT  176 (567)
T ss_pred             eeeEEEECCCCEEEecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEe
Confidence            345555543 355666632     23467889999999999888   4579999764 7888876532   248888765


Q ss_pred             cccccCCCCCCCC------------CCcCeEEEcCEEEEcccCCcccchHH
Q psy9486         108 DVGIAKDGSPKDT------------FARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus       108 ~~g~~~~g~~~~~------------~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+  ..+-+..+            ...+.+++|++||+|+|.+|.+.+++
T Consensus       177 ~~~--~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l  225 (567)
T PTZ00367        177 EAE--KYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY  225 (567)
T ss_pred             cCC--cccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc
Confidence            311  00001111            12356899999999999999997774

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.96  E-value=6.4e-05  Score=67.39  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=59.9

Q ss_pred             cEEEEhHHHHHHHHHHHHH----CC--CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486          61 NYVVRLGHVVKWLGEQAEA----MG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF  134 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~----~G--v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~  134 (165)
                      +..++-..+.+.|.+.|++    .|  ++|+++++|++|..+ ++.++.|.|.+               | +++|+.||+
T Consensus       205 g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~---------------G-~i~A~~VVv  267 (497)
T PTZ00383        205 LTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNR---------------G-EIRARFVVV  267 (497)
T ss_pred             CEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECC---------------C-EEEeCEEEE
Confidence            3578888999999999999    88  889999999999875 46667788764               3 799999999


Q ss_pred             cccCCcccchHHHhhcCC
Q psy9486         135 AEGCHGHLTKSLSSRFNL  152 (165)
Q Consensus       135 A~G~~s~l~~~l~~~~gl  152 (165)
                      |+|+|+   ..|.+++|+
T Consensus       268 aAG~~S---~~La~~~Gi  282 (497)
T PTZ00383        268 SACGYS---LLFAQKMGY  282 (497)
T ss_pred             CcChhH---HHHHHHhCC
Confidence            999997   566666776

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=97.95  E-value=3.3e-05  Score=70.04  Aligned_cols=65  Identities=20%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++++.|++|+.+ +|+|+||...+.   .+|..       ..|+||.||+|+|..+.+
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCL---ETGEI-------HRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEEeCeEEECCCCcccc
Confidence            467889999999999999999999999986 799999977431   23433       379999999999998854

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.92  E-value=9.3e-05  Score=66.35  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=56.7

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+.+.+..+.+.|.+.+.+. |++|+.+++|+++..++ +.| .|.+.+    .+|+.       .+++|++||.|+|++
T Consensus       107 ~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v-~v~~~~----~~G~~-------~~i~ad~vVgADG~~  173 (538)
T PRK06183        107 RNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGV-TVTLTD----ADGQR-------ETVRARYVVGCDGAN  173 (538)
T ss_pred             hccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeE-EEEEEc----CCCCE-------EEEEEEEEEecCCCc
Confidence            46788999999999999885 99999999999998864 333 244432    23322       479999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.+.+.
T Consensus       174 S~vR~~  179 (538)
T PRK06183        174 SFVRRT  179 (538)
T ss_pred             hhHHHH
Confidence            999777

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.92  E-value=4.9e-05  Score=66.27  Aligned_cols=61  Identities=25%  Similarity=0.384  Sum_probs=52.0

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          61 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+.++|..|.+|+.+.+++ .+++|+ ...|++|+.+ +++|.||++.+               |..+.|+.||+|+|.
T Consensus        89 r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~---------------g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   89 RAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKD---------------GEEIEADAVVLATGT  150 (392)
T ss_dssp             EEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETT---------------SEEEEECEEEE-TTT
T ss_pred             HhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCC---------------CCEEecCEEEEeccc
Confidence            4589999999999999998 688887 5689999996 79999999986               578999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>KOG1298|consensus

Probab=97.91  E-value=2.8e-05  Score=67.77  Aligned_cols=97  Identities=24%  Similarity=0.414  Sum_probs=72.9

Q ss_pred             EEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCC
Q psy9486          39 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP  117 (165)
Q Consensus        39 ~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~  117 (165)
                      +....+..++||+.........|-...-+.|.+-|.++|.. ..|++.++ +|.+++.| +|.|.||+..+    +.|+.
T Consensus       119 ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee-~gvvkGV~yk~----k~gee  192 (509)
T KOG1298|consen  119 IFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEE-EGVVKGVTYKN----KEGEE  192 (509)
T ss_pred             EEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhc-cCeEEeEEEec----CCCce
Confidence            33355788888875422233335566667899999999877 68888766 68888875 78999999987    55654


Q ss_pred             CCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486         118 KDTFARGMELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus       118 ~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                             .+..|..+|+|+|+.|.+.|.|.+
T Consensus       193 -------~~~~ApLTvVCDGcfSnlRrsL~~  216 (509)
T KOG1298|consen  193 -------VEAFAPLTVVCDGCFSNLRRSLCD  216 (509)
T ss_pred             -------EEEecceEEEecchhHHHHHHhcC
Confidence                   378999999999999999888654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.91  E-value=4.3e-05  Score=69.65  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+...|.+++++.|++|++++.|++|+.+++|+|+||...+.   .+|+.       ..|+||.||+|+|..+.+
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICI---ETGEV-------VYFKARATVLATGGAGRI  208 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCcccc
Confidence            4578889999999999999999999999865789999987431   24433       368999999999998854

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.90  E-value=9.3e-05  Score=62.61  Aligned_cols=72  Identities=21%  Similarity=0.200  Sum_probs=56.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++-..+.+.|.+.|++.|++++.+++|+++..+ ++.+ .|.+.+                .++.|+.||+|+|.++
T Consensus       139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~----------------~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTK----------------GSYQANKLVVTAGAWT  200 (380)
T ss_pred             CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCC----------------CEEEeCEEEEecCcch
Confidence            456677889999999999999999999999999875 4443 476654                3799999999999985


Q ss_pred             ccchHHHhhcCCC
Q psy9486         141 HLTKSLSSRFNLR  153 (165)
Q Consensus       141 ~l~~~l~~~~gl~  153 (165)
                         .++.+++|+.
T Consensus       201 ---~~l~~~~g~~  210 (380)
T TIGR01377       201 ---SKLLSPLGIE  210 (380)
T ss_pred             ---HHHhhhcccC
Confidence               3444455544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.89  E-value=7.5e-05  Score=65.67  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC-c
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH-G  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~-s  140 (165)
                      +.-..+.+.|.+.++++|++|+.+++|.++..+ ++++++|.+.+      +.       ...+.||.||+|+|+| |
T Consensus       260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~------g~-------~~~l~AD~vVLAaGaw~S  323 (419)
T TIGR03378       260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRN------HR-------DIPLRADHFVLASGSFFS  323 (419)
T ss_pred             CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecC------Cc-------cceEECCEEEEccCCCcC
Confidence            444567788999999999999999999999886 68888888764      10       1379999999999999 5

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.89  E-value=4.5e-05  Score=69.64  Aligned_cols=66  Identities=18%  Similarity=0.319  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+...|.+++++.||+|++++.|++|+.+++|+|+||...+.   ++|..       ..|.|+.||+|+|..+.+
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNL---DDGTL-------HRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCccc
Confidence            3678899999999999999999999999864589999987431   24432       379999999999998853

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.88  E-value=2.7e-06  Score=74.41  Aligned_cols=70  Identities=29%  Similarity=0.365  Sum_probs=0.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.+++..+..+|.+.++++||+|++++.|.+++.+ +++|+||.+.+    ++|.        .+|+|++||+||| .+.
T Consensus        85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~----~~g~--------~~i~A~~~IDaTG-~g~  150 (428)
T PF12831_consen   85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVET----KSGR--------KEIRAKVFIDATG-DGD  150 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccccccccc----cccc--------ccccccccccccc-ccc
Confidence            57778888888899999999999999999999996 78999999986    3442        4899999999999 465


Q ss_pred             cchH
Q psy9486         142 LTKS  145 (165)
Q Consensus       142 l~~~  145 (165)
                      |+..
T Consensus       151 l~~~  154 (428)
T PF12831_consen  151 LAAL  154 (428)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6555

>PRK08275 putative oxidoreductase; Provisional

Probab=97.88  E-value=6e-05  Score=68.07  Aligned_cols=66  Identities=30%  Similarity=0.340  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.++|.+++++.||+|++++.|++|+.+++++|+||.+.+.   .+|+.       ..+.||.||+|+|..+.+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDC---RTGEF-------LVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEec---CCCcE-------EEEECCEEEECCCCcccc
Confidence            4678999999999999999999999999864689999976431   23432       368999999999998765

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.87  E-value=4.8e-05  Score=70.04  Aligned_cols=67  Identities=22%  Similarity=0.306  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      -..+.+.|.++|++.||+|++++.+.+|+.+++|+|+||.+.+.   .+|+.       ..|.||.||+|+|..+.+
T Consensus       186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNM---EDGTL-------HRFRAHSTILATGGYGRA  252 (635)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEc---CCCeE-------EEEEcCeEEECCCCCccc
Confidence            35678899999999999999999999999864689999987541   24433       378999999999998854

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.86  E-value=5.1e-05  Score=68.42  Aligned_cols=78  Identities=22%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.++-..|.-..+..|.+.|+++++.++|+.++++ ++ |+||++.+.   .+|+.       .+|+|+.||.|+|.|+ 
T Consensus       159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~---~tg~~-------~~ira~~VVNAaGpW~-  225 (532)
T COG0578         159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDR---ETGET-------YEIRARAVVNAAGPWV-  225 (532)
T ss_pred             ceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEec---CCCcE-------EEEEcCEEEECCCccH-
Confidence            35566677777899999999999999999999996 56 999999872   24544       4799999999999997 


Q ss_pred             cchHHHhhcCCCC
Q psy9486         142 LTKSLSSRFNLRG  154 (165)
Q Consensus       142 l~~~l~~~~gl~~  154 (165)
                        .++.+..++..
T Consensus       226 --d~i~~~~~~~~  236 (532)
T COG0578         226 --DEILEMAGLEQ  236 (532)
T ss_pred             --HHHHHhhcccC
Confidence              77777776653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.85  E-value=0.00012  Score=65.60  Aligned_cols=69  Identities=16%  Similarity=0.278  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCcccchHH
Q psy9486          69 VVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSL  146 (165)
Q Consensus        69 ~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s~l~~~l  146 (165)
                      +...|.+++++ .|++|+++++|++|+.+ +++|+||....     +|..       ..|+|+ .||+|+|..+.. ++|
T Consensus       175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-----~g~~-------~~i~A~k~VIlAtGG~~~n-~~m  240 (513)
T PRK12837        175 LIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER-----GGER-------RRVRARRGVLLAAGGFEQN-DDM  240 (513)
T ss_pred             HHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-----CCcE-------EEEEeCceEEEeCCCccCC-HHH
Confidence            44444555555 59999999999999986 78999998753     3432       379995 899999999887 678


Q ss_pred             HhhcC
Q psy9486         147 SSRFN  151 (165)
Q Consensus       147 ~~~~g  151 (165)
                      .++|.
T Consensus       241 ~~~~~  245 (513)
T PRK12837        241 RARYG  245 (513)
T ss_pred             HHHhc
Confidence            88886

>PLN02697 lycopene epsilon cyclase

Probab=97.85  E-value=6.9e-05  Score=67.68  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=49.6

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .++|..|+++|.++|.+.||++ .+++|+++..+ ++.+..+.+.+               |.+++|+.||+|+|++|
T Consensus       188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~d---------------G~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACED---------------GRVIPCRLATVASGAAS  248 (529)
T ss_pred             EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcC---------------CcEEECCEEEECCCcCh
Confidence            5999999999999999999998 57799998775 34443344433               35899999999999998

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.84  E-value=0.00022  Score=64.08  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=55.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+.+.+..+.++|.+.+++. |++|+.+++|+++..++ +.+. +...+    .+|        ..+++|++||.|+|.+
T Consensus       119 ~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~-v~~~~----~~g--------~~~i~ad~vVgADG~~  184 (547)
T PRK08132        119 FINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVT-LTVET----PDG--------PYTLEADWVIACDGAR  184 (547)
T ss_pred             eEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEE-EEEEC----CCC--------cEEEEeCEEEECCCCC
Confidence            34578999999999999885 79999999999998763 3322 33322    122        1369999999999999


Q ss_pred             cccchHHHhhcCCC
Q psy9486         140 GHLTKSLSSRFNLR  153 (165)
Q Consensus       140 s~l~~~l~~~~gl~  153 (165)
                      |.+.+.    +|+.
T Consensus       185 S~vR~~----lg~~  194 (547)
T PRK08132        185 SPLREM----LGLE  194 (547)
T ss_pred             cHHHHH----cCCC
Confidence            988666    5653

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.84  E-value=8.7e-05  Score=66.32  Aligned_cols=72  Identities=15%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+...|.+.+++.|++|+++++|++|+.+ +++|+||.+..    .+|+.       ..|+|+.||+|+|.++.. .++
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~----~~g~~-------~~i~a~~VVlAtGG~~~n-~~m  256 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKI----NGKET-------KTISSKAVVVTTGGFGAN-KDM  256 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEe----CCCeE-------EEEecCeEEEeCCCcccC-HHH
Confidence            356778899999999999999999999875 68999998753    22221       369999999999998876 556


Q ss_pred             HhhcC
Q psy9486         147 SSRFN  151 (165)
Q Consensus       147 ~~~~g  151 (165)
                      .++|.
T Consensus       257 ~~~~~  261 (506)
T PRK06481        257 IAKYR  261 (506)
T ss_pred             HHHhC
Confidence            66664

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.84  E-value=7.8e-05  Score=67.96  Aligned_cols=66  Identities=26%  Similarity=0.380  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.|+++++++.+.+++.+++|+|+||.+.+.   .+|..       ..+.||.||+|+|..+.+
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGDV-------YILEAKTTLFATGGAGRI  213 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCeE-------EEEECCeEEECCCCcccc
Confidence            4688899999999999999999999999865689999987531   13322       368999999999998865

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.84  E-value=7.7e-05  Score=67.64  Aligned_cols=65  Identities=22%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++++.+++|+.+ +|+|+||.+.+.   .+|+.       ..|+||.||+|+|..+.+
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGML  200 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCccccc
Confidence            356778899999999999999999999986 799999987641   12322       368999999999998854

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.82  E-value=0.00017  Score=62.10  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=54.0

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.+.|..|.+.|.+++.+ .|++++++++|+++..+ ++.| .|...+    .++        +..+.||+||.|+|.+|
T Consensus       102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v-~v~~~~----~~~--------~~~~~adlvIgADG~~S  167 (400)
T PRK06475        102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSI-TATIIR----TNS--------VETVSAAYLIACDGVWS  167 (400)
T ss_pred             eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCce-EEEEEe----CCC--------CcEEecCEEEECCCccH
Confidence            468999999999999977 58999999999999765 3443 233321    011        24699999999999999


Q ss_pred             ccchH
Q psy9486         141 HLTKS  145 (165)
Q Consensus       141 ~l~~~  145 (165)
                      .+.+.
T Consensus       168 ~vR~~  172 (400)
T PRK06475        168 MLRAK  172 (400)
T ss_pred             hHHhh
Confidence            99666

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.82  E-value=8e-05  Score=67.23  Aligned_cols=64  Identities=28%  Similarity=0.446  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...|.+++++.||+|++++.|++|+.+ +|+|+||...+.   .+|+.       ..+.|+.||+|+|..+.+
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlAtGG~~~~  193 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDL---KTGEI-------VFFRAKAVVLATGGYGRI  193 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCeEEECCCcccCC
Confidence            57788999999999999999999999986 799999877431   13322       369999999999998854

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.80  E-value=0.0001  Score=66.50  Aligned_cols=74  Identities=23%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHH----HCCCEEecCCceeEEEEcCCCcEEEEEEccc--ccc--------CCCCCCCCCCcCeEEEcCEEE
Q psy9486          68 HVVKWLGEQAE----AMGVEIYPGIPASEVLYHGDGSVKGIATGDV--GIA--------KDGSPKDTFARGMELHAKVTI  133 (165)
Q Consensus        68 ~~d~~L~~~A~----~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g~~--------~~g~~~~~~~~g~~i~Ak~VI  133 (165)
                      .+.+.|.++++    +.||+|++++++++|+.+ +|+|+||.+...  +..        .++..       ..|.||.||
T Consensus       149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~-------~~i~AkaVI  220 (549)
T PRK12834        149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGE-------FELRAQAVI  220 (549)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccce-------EEEecCEEE
Confidence            45667766664    236999999999999986 799999986310  000        00111       378999999


Q ss_pred             EcccCCcccchHHHhhc
Q psy9486         134 FAEGCHGHLTKSLSSRF  150 (165)
Q Consensus       134 ~A~G~~s~l~~~l~~~~  150 (165)
                      +|+|..+.+ .+|.++|
T Consensus       221 LATGGf~~n-~em~~~~  236 (549)
T PRK12834        221 VTSGGIGGN-HELVRRN  236 (549)
T ss_pred             EeCCCcccC-HHHHHHh
Confidence            999999988 6666665

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.79  E-value=0.00023  Score=61.05  Aligned_cols=72  Identities=25%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...++-..+.+.|.+.+++.|++++++++|.++..+ ++.+ .|.+.+               + ++.|+.||+|+|.++
T Consensus       143 ~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~---------------g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        143 TGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQ---------------G-EYEARTLINCAGLMS  204 (393)
T ss_pred             ceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECC---------------C-EEEeCEEEECCCcch
Confidence            346788899999999999999999999999999875 4443 577654               3 799999999999997


Q ss_pred             ccchHHHhhcCCC
Q psy9486         141 HLTKSLSSRFNLR  153 (165)
Q Consensus       141 ~l~~~l~~~~gl~  153 (165)
                         ..+.+.+|+.
T Consensus       205 ---~~l~~~~g~~  214 (393)
T PRK11728        205 ---DRLAKMAGLE  214 (393)
T ss_pred             ---HHHHHHhCCC
Confidence               4555556654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.79  E-value=9e-05  Score=67.41  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++++.|++|+.+++   |+|+||.+.+.   ++|+.       ..|+|+.||+|+|..+.+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEI-------HVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeE-------EEEEeCeEEECCCCCccc
Confidence            46788999999999999999999999998643   89999977431   23322       368999999999998854

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.77  E-value=8.8e-05  Score=68.30  Aligned_cols=62  Identities=23%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.|.+++++.||+|++++.|++|+.+ +++|+||.+.+.   .+|..       ..|.||.||+|+|..+.+
T Consensus       173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        173 YQALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV  234 (640)
T ss_pred             HHHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence            367778888999999999999999986 689999987641   13432       369999999999998864

>PRK05868 hypothetical protein; Validated

Probab=97.74  E-value=0.00016  Score=61.91  Aligned_cols=68  Identities=18%  Similarity=0.123  Sum_probs=53.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.+.|..|.+.|.+ +...|++++++++|+++..+ ++.| .|...+               |.+++||+||.|+|.+|
T Consensus        99 ~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~d---------------g~~~~adlvIgADG~~S  160 (372)
T PRK05868         99 DIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDD-GDSV-RVTFER---------------AAAREFDLVIGADGLHS  160 (372)
T ss_pred             eEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEec-CCeE-EEEECC---------------CCeEEeCEEEECCCCCc
Confidence            578899999997754 55679999999999999764 3433 355554               35799999999999999


Q ss_pred             ccchHH
Q psy9486         141 HLTKSL  146 (165)
Q Consensus       141 ~l~~~l  146 (165)
                      .+.+.+
T Consensus       161 ~vR~~~  166 (372)
T PRK05868        161 NVRRLV  166 (372)
T ss_pred             hHHHHh
Confidence            997775

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.74  E-value=0.00017  Score=66.33  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=59.5

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .++-..+...|++.|++.|++|++.+.|.++..++ +++++||++.+.   .+|+       ..+|+|+.||+|+|+|+ 
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws-  296 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFC-  296 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhH-
Confidence            35778899999999999999999999999998864 478899887431   1221       12689999999999997 


Q ss_pred             cchHHHhhcC
Q psy9486         142 LTKSLSSRFN  151 (165)
Q Consensus       142 l~~~l~~~~g  151 (165)
                        .++.+..+
T Consensus       297 --~~l~~~~g  304 (627)
T PLN02464        297 --DEVRKMAD  304 (627)
T ss_pred             --HHHHHhcc
Confidence              56665564

>PRK06753 hypothetical protein; Provisional

Probab=97.73  E-value=8.5e-05  Score=62.86  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=54.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .++.+.|..|.+.|.+.+..  ++|+++++|+++..+ ++.+ .|.+.+               |.+++|++||.|+|.+
T Consensus        91 ~~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~~~~vigadG~~  151 (373)
T PRK06753         91 LNVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIENE-TDKV-TIHFAD---------------GESEAFDLCIGADGIH  151 (373)
T ss_pred             ccccccHHHHHHHHHHhCCC--ceEEECCEEEEEEec-CCcE-EEEECC---------------CCEEecCEEEECCCcc
Confidence            46899999999999988764  689999999999865 4443 355543               3579999999999999


Q ss_pred             cccchHH
Q psy9486         140 GHLTKSL  146 (165)
Q Consensus       140 s~l~~~l  146 (165)
                      |.+.+.+
T Consensus       152 S~vR~~~  158 (373)
T PRK06753        152 SKVRQSV  158 (373)
T ss_pred             hHHHHHh
Confidence            9997774

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.72  E-value=0.00021  Score=60.86  Aligned_cols=64  Identities=16%  Similarity=0.061  Sum_probs=51.4

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.++|..|++.|.++|.+.|++++ ..+|.++..+ ++..+.|.+.+               |.+++|+.||+|+|.+|.
T Consensus        80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~---------------g~~~~a~~VI~A~G~~s~  142 (388)
T TIGR01790        80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAG---------------GQRIQARLVIDARGFGPL  142 (388)
T ss_pred             eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCC---------------CCEEEeCEEEECCCCchh
Confidence            469999999999999999999997 4578888764 34445566654               357999999999999984


Q ss_pred             c
Q psy9486         142 L  142 (165)
Q Consensus       142 l  142 (165)
                      +
T Consensus       143 ~  143 (388)
T TIGR01790       143 V  143 (388)
T ss_pred             c
Confidence            4

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.71  E-value=0.00024  Score=62.66  Aligned_cols=77  Identities=29%  Similarity=0.340  Sum_probs=63.9

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeE-EEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME-LHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~-i~Ak~VI~A~G  137 (165)
                      +.+.+|+=..+...|++.|++.|++++++++|++|..+.|| ++-+.+.+               |.+ ++||.||.|.|
T Consensus       145 p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AG  208 (429)
T COG0579         145 PSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAG  208 (429)
T ss_pred             CCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCc
Confidence            44678998999999999999999999999999999987554 45455554               334 99999999999


Q ss_pred             CCcccchHHHhhcCCCC
Q psy9486         138 CHGHLTKSLSSRFNLRG  154 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~~  154 (165)
                      ..+   ..|.++.|+..
T Consensus       209 l~A---d~la~~~g~~~  222 (429)
T COG0579         209 LYA---DPLAQMAGIPE  222 (429)
T ss_pred             hhH---HHHHHHhCCCc
Confidence            886   78888888875

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.71  E-value=0.00014  Score=66.57  Aligned_cols=65  Identities=20%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHH----CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEA----MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~----~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...|.+.+++    .||+|++++.|++|+.+++|+|+||.+.+.   .+|..       ..|.||.||+|+|..+.+
T Consensus       130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~  198 (603)
T TIGR01811       130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV  198 (603)
T ss_pred             HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence            455556665544    389999999999999865679999987641   13432       368999999999998754

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.71  E-value=0.00012  Score=67.61  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...|.+++++.||+|++++.|.+|+.+ +|+|+||.+.+.   .+|+.       ..|.||.||+|+|..+.+
T Consensus       159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        159 TMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCL---ITGEL-------RAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCcccCC
Confidence            46667899999999999999999999986 789999887541   24433       368899999999998865

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.70  E-value=0.00013  Score=65.80  Aligned_cols=66  Identities=24%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+...|.+++++.||+|++++.|++|+.+++++|+||...+.   .+|+.       ..|+||.||+|+|..+.+
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~~  199 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDL---RNGEI-------FPIYAKATILATGGAGQL  199 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEEC---CCCcE-------EEEEcCcEEECCCCCCCC
Confidence            4567788999999999999999999999874445999876431   23432       369999999999998754

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.70  E-value=0.0004  Score=61.98  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=60.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      +.+..++-..+.+.|.+.|++.|++|+++++|+++..++++.+ .|.+.+.   .+|+       +.+++|+.||+|+|.
T Consensus       170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~  238 (483)
T TIGR01320       170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGG  238 (483)
T ss_pred             CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCc
Confidence            3456788999999999999999999999999999987534433 2433210   1121       136999999999999


Q ss_pred             CcccchHHHhhcCCC
Q psy9486         139 HGHLTKSLSSRFNLR  153 (165)
Q Consensus       139 ~s~l~~~l~~~~gl~  153 (165)
                      |+   ..+.+++|+.
T Consensus       239 ~s---~~La~~~Gi~  250 (483)
T TIGR01320       239 GA---LPLLQKSGIP  250 (483)
T ss_pred             ch---HHHHHHcCCC
Confidence            97   6677778875

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR02730 carot_isom carotene isomerase

Probab=97.67  E-value=0.00015  Score=64.28  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++++.||++.+               |.++.|+.||.|.|.+..+
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~  288 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLAD---------------GEKIYAKRIVSNATRWDTF  288 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCChHHHH
Confidence            468888999999999999999999999986 68899999875               4579999999999988655

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.66  E-value=0.00019  Score=65.13  Aligned_cols=65  Identities=25%  Similarity=0.372  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++++.|++|+.+ +|+|+||...+.   .+|+.       ..+.|+.||+|+|..+.+
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHI---ADGRL-------EVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCEEEECCCCCcCC
Confidence            467788999999999999999999999986 789999875321   13322       368999999999998854

>PLN02463 lycopene beta cyclase

Probab=97.65  E-value=0.00029  Score=62.38  Aligned_cols=64  Identities=19%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..++|..|+++|.+++.+.||+++ ..+|++|..+ ++. +.|.+.+               |..++|++||+|+|.+|.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~d---------------G~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDD---------------GVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECcCCCcC
Confidence            358999999999999999999997 4689998775 333 4577765               458999999999999987


Q ss_pred             cc
Q psy9486         142 LT  143 (165)
Q Consensus       142 l~  143 (165)
                      +.
T Consensus       171 l~  172 (447)
T PLN02463        171 LV  172 (447)
T ss_pred             cc
Confidence            64

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.64  E-value=0.00022  Score=62.53  Aligned_cols=71  Identities=24%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc--
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT--  143 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~--  143 (165)
                      ...+-.+|.++++++||+|+++++|.+|..+ ++.+..|++.+               +..+.||.||+|+|..|.-.  
T Consensus       108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~---------------~~~~~a~~vILAtGG~S~p~~G  171 (409)
T PF03486_consen  108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKN---------------GGEYEADAVILATGGKSYPKTG  171 (409)
T ss_dssp             HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETT---------------TEEEEESEEEE----SSSGGGT
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccC---------------cccccCCEEEEecCCCCccccC
Confidence            4567789999999999999999999999986 57778899943               35899999999999776321  


Q ss_pred             -----hHHHhhcCC
Q psy9486         144 -----KSLSSRFNL  152 (165)
Q Consensus       144 -----~~l~~~~gl  152 (165)
                           -++.+++|.
T Consensus       172 S~G~gy~~a~~lGh  185 (409)
T PF03486_consen  172 SDGSGYRIAKKLGH  185 (409)
T ss_dssp             -SSHHHHHHHHTT-
T ss_pred             CCcHHHHHHHHCCC
Confidence                 345555664

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.64  E-value=0.0003  Score=63.83  Aligned_cols=66  Identities=27%  Similarity=0.371  Sum_probs=53.1

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccc
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLT  143 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~  143 (165)
                      .-..+...|.+++++.|++|++++.|++|+.+ +++|+||++.+    .++.        ..+.| +.||+|+|.++...
T Consensus       212 ~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~----~~~~--------~~i~a~k~VVlAtGg~~~n~  278 (574)
T PRK12842        212 SGNALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVID----AGGE--------RRITARRGVVLACGGFSHDL  278 (574)
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEc----CCce--------EEEEeCCEEEEcCCCccchH
Confidence            44567888999999999999999999999986 78999998864    1221        25788 58999999998663

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.64  E-value=0.00022  Score=69.79  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHH---CCCEEecCCceeEEEEcCC--------CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486          67 GHVVKWLGEQAEA---MGVEIYPGIPASEVLYHGD--------GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA  135 (165)
Q Consensus        67 ~~~d~~L~~~A~~---~Gv~i~~~~~v~~i~~~~~--------g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A  135 (165)
                      ..+.+.|.+.+++   .||+|+++++|++|+.+++        ++|+||.+.+.+ +.+|+.       ..|.||.||+|
T Consensus       544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILA  615 (1167)
T PTZ00306        544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILA  615 (1167)
T ss_pred             HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEe
Confidence            4466677777775   4999999999999998632        389999887510 114543       37999999999


Q ss_pred             ccCCcccch--HHHhhcC
Q psy9486         136 EGCHGHLTK--SLSSRFN  151 (165)
Q Consensus       136 ~G~~s~l~~--~l~~~~g  151 (165)
                      +|..+....  +|.++|.
T Consensus       616 TGGf~~N~e~~~m~~~y~  633 (1167)
T PTZ00306        616 TGGFSNDHTPNSLLREYA  633 (1167)
T ss_pred             cCCcccCccHHHHHHHhC
Confidence            999987743  6777764

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.62  E-value=0.00023  Score=64.26  Aligned_cols=68  Identities=28%  Similarity=0.388  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccc-cCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI-AKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~-~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++++.|.+++.+++|+|+||.+.+..- ..++ .       ..+.|+.||+|+|..+.+
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g-~-------~~i~Ak~VIlATGG~~~~  212 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDG-V-------GAVHAPAVVLATGGLGQL  212 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCc-E-------EEEEcCeEEECCCCCCCC
Confidence            467788999999999999999999999986457999997752100 0111 1       368999999999998854

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.59  E-value=0.00054  Score=62.04  Aligned_cols=70  Identities=21%  Similarity=0.427  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCcccchHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHGHLTKSL  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s~l~~~l  146 (165)
                      .+...|.+.+++.||+|+++++|++|+.+ +++|+||.+..     +|+.       ..|+|+ .||+|+|..... +.|
T Consensus       209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-----~g~~-------~~i~A~~~VIlAtGG~~~n-~~m  274 (557)
T PRK07843        209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-----SGEP-------QLIRARRGVILASGGFEHN-EQM  274 (557)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-----CCcE-------EEEEeceeEEEccCCcCcC-HHH
Confidence            35667778888999999999999999986 68999998753     2322       368996 699999988876 566


Q ss_pred             HhhcC
Q psy9486         147 SSRFN  151 (165)
Q Consensus       147 ~~~~g  151 (165)
                      .+.|.
T Consensus       275 ~~~~~  279 (557)
T PRK07843        275 RAKYQ  279 (557)
T ss_pred             HHHhc
Confidence            66664

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.58  E-value=0.0008  Score=57.96  Aligned_cols=97  Identities=18%  Similarity=0.124  Sum_probs=62.0

Q ss_pred             ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC
Q psy9486          35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD  114 (165)
Q Consensus        35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~  114 (165)
                      +.+.+........+++....  .........+..+.+.|.+++.+.|++++++.++..+.-. ++..++|....     +
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~-----~  144 (390)
T TIGR02360        73 EGTEIAFDGQRFRIDLKALT--GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFER-----D  144 (390)
T ss_pred             cceEEeeCCEEEEEeccccC--CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEE-----C
Confidence            34444444445556654221  1111123457788999999999999999999888777542 22223455531     2


Q ss_pred             CCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486         115 GSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus       115 g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      |+.       .+++||+||.|+|.+|.+.+++
T Consensus       145 g~~-------~~i~adlvIGADG~~S~VR~~l  169 (390)
T TIGR02360       145 GER-------HRLDCDFIAGCDGFHGVSRASI  169 (390)
T ss_pred             CeE-------EEEEeCEEEECCCCchhhHHhc
Confidence            211       3699999999999999997763

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.56  E-value=0.00035  Score=64.00  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          66 LGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        66 r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ...+.+.|.+.|++.| |+|++++.|.+|+.+ +++|+||...+.   .+|+.       ..+.|+.||+|+|.++.
T Consensus       131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~  196 (608)
T PRK06854        131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSV---RENKF-------YVFKAKAVIVATGGAAG  196 (608)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEc---cCCcE-------EEEECCEEEECCCchhh
Confidence            4467888999998876 999999999999886 689999865321   12322       36999999999998874

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.56  E-value=0.00019  Score=61.24  Aligned_cols=61  Identities=11%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .++-..+...|++.|++ |++|++++.|.++..+ +++ ++|++.+               |..+.|+.||+|+|.|+.
T Consensus       131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDAN---------------GEVIAASVVVLANGAQAG  191 (381)
T ss_pred             ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence            56778899999999999 9999999999999875 444 5677764               345899999999999984

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.56  E-value=0.00072  Score=58.16  Aligned_cols=75  Identities=15%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      ++-..+...|.+.|++.|++|+++++|.++..+ ++.++ |.+.+    .++.+      +.+++|+.||+|+|+|+   
T Consensus       194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-v~~~~----~~~~~------~~~i~a~~vV~a~G~~s---  258 (410)
T PRK12409        194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVV-LTVQP----SAEHP------SRTLEFDGVVVCAGVGS---  258 (410)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEc----CCCCc------cceEecCEEEECCCcCh---
Confidence            455578889999999999999999999999875 45443 44432    01100      13799999999999997   


Q ss_pred             hHHHhhcCCC
Q psy9486         144 KSLSSRFNLR  153 (165)
Q Consensus       144 ~~l~~~~gl~  153 (165)
                      .++.+.++..
T Consensus       259 ~~l~~~~~~~  268 (410)
T PRK12409        259 RALAAMLGDR  268 (410)
T ss_pred             HHHHHHhCCC
Confidence            4444445543

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.56  E-value=0.00037  Score=61.35  Aligned_cols=61  Identities=26%  Similarity=0.287  Sum_probs=50.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++-.++.+.|++.|++.||+|+++++|+++..   +..+.|++.+               | +++|+.||+|+|+|+
T Consensus       177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~---------------g-~v~A~~VV~Atga~s  237 (460)
T TIGR03329       177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPD---------------G-QVTADKVVLALNAWM  237 (460)
T ss_pred             CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCC---------------c-EEECCEEEEcccccc
Confidence            34667889999999999999999999999999864   2334677754               3 799999999999996

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.55  E-value=0.00034  Score=63.78  Aligned_cols=66  Identities=23%  Similarity=0.288  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHCC----CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMG----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~G----v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.+    +++++++.+.+++.+++|+|+||.+.+.   .+|+.       ..+.|+.||+|||..+.+
T Consensus       133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  202 (589)
T PRK08641        133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII  202 (589)
T ss_pred             HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence            457778888887654    8899999999999865789999988641   12322       368999999999999864

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.54  E-value=0.00032  Score=61.55  Aligned_cols=63  Identities=24%  Similarity=0.296  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++ .||+|+++++|.+|+.+ +++|+||....     +|..       ..|.||.||+|+|..+.+
T Consensus       128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-----~g~~-------~~i~Ak~VILAtGG~~~l  191 (433)
T PRK06175        128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK-----DNKQ-------INIYSKVTILATGGIGGL  191 (433)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE-----CCcE-------EEEEcCeEEEccCccccc
Confidence            3566778888875 59999999999999885 68999986543     2211       369999999999987653

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.53  E-value=0.00046  Score=61.13  Aligned_cols=74  Identities=26%  Similarity=0.328  Sum_probs=61.7

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc-
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT-  143 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~-  143 (165)
                      ...+..+-+.+..+++|++|++.|.|.++.++ ++.+.+|.+.+               |.+|.|+.||+|-|..+.-. 
T Consensus       171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw~  234 (486)
T COG2509         171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDWF  234 (486)
T ss_pred             chHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccC---------------CcEEecCEEEEccCcchHHHH
Confidence            34567788899999999999999999999996 67788998886               56999999999999988543 


Q ss_pred             hHHHhhcCCCC
Q psy9486         144 KSLSSRFNLRG  154 (165)
Q Consensus       144 ~~l~~~~gl~~  154 (165)
                      ..|.+++|+.-
T Consensus       235 ~~l~~K~Gv~~  245 (486)
T COG2509         235 EMLHKKLGVKM  245 (486)
T ss_pred             HHHHHhcCccc
Confidence            56667778754

>TIGR00551 nadB L-aspartate oxidase

Probab=97.49  E-value=0.00036  Score=61.99  Aligned_cols=63  Identities=25%  Similarity=0.334  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++ .||+|++++.|++|+.+ +++|+||.+.+    . +..       ..++|+.||+|+|.++.+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~----~-~~~-------~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWN----R-ETV-------ETCHADAVVLATGGAGKL  191 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEE----C-CcE-------EEEEcCEEEECCCcccCC
Confidence            4678899999998 79999999999999885 68999998765    1 211       368999999999999865

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.48  E-value=0.001  Score=59.63  Aligned_cols=81  Identities=20%  Similarity=0.258  Sum_probs=60.0

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      +.++.++=..+.+.|.+.|++.| |+|+++++|+++..++++.+. |.+.+.   .+|.       ...++|+.||+|+|
T Consensus       175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~---~~G~-------~~~i~A~~VVvaAG  243 (494)
T PRK05257        175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDL---KTGE-------KRTVRAKFVFIGAG  243 (494)
T ss_pred             CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEc---CCCc-------eEEEEcCEEEECCC
Confidence            34668888899999999999987 899999999999875455433 443210   0121       12699999999999


Q ss_pred             CCcccchHHHhhcCCC
Q psy9486         138 CHGHLTKSLSSRFNLR  153 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~  153 (165)
                      .|+   ..+.+++|+.
T Consensus       244 g~s---~~L~~~~Gi~  256 (494)
T PRK05257        244 GGA---LPLLQKSGIP  256 (494)
T ss_pred             cch---HHHHHHcCCC
Confidence            997   6677777775

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.47  E-value=0.00057  Score=60.98  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=56.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++-..+..+|+..|++.|+++++.++|.++..+  +..++|.+.+    ..|+.       .+|+|+.||.|+|+|+  
T Consensus       151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~----~~g~~-------~~i~a~~VVnAaG~wa--  215 (502)
T PRK13369        151 WVDDARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRD----ADGET-------RTVRARALVNAAGPWV--  215 (502)
T ss_pred             eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEe----CCCCE-------EEEEecEEEECCCccH--
Confidence            3677889999999999999999999999999875  3345677654    11221       3699999999999997  


Q ss_pred             chHHHhhc-CC
Q psy9486         143 TKSLSSRF-NL  152 (165)
Q Consensus       143 ~~~l~~~~-gl  152 (165)
                       .++.+++ |.
T Consensus       216 -~~l~~~~~g~  225 (502)
T PRK13369        216 -TDVIHRVAGS  225 (502)
T ss_pred             -HHHHhhccCC
Confidence             5555533 54

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.46  E-value=0.00067  Score=52.32  Aligned_cols=61  Identities=30%  Similarity=0.372  Sum_probs=46.5

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..++.++.++|.+.|++.|+++.++++|+++.+++++  .-|.+.+               +.+++|+.||+|+|..+
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~---------------~~~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD---------------GRTIRADRVVLATGHYS  138 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT---------------S-EEEEEEEEE---SSC
T ss_pred             cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe---------------cceeeeeeEEEeeeccC
Confidence            3888999999999999999999999999999997444  4577765               34899999999999754

...

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.46  E-value=0.00053  Score=60.65  Aligned_cols=58  Identities=28%  Similarity=0.392  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+.+++.||+++.. .+.+++.+ +++|+||.+..                ..+.|+.||+|+|.++.+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~g----------------~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLDG----------------ELLKFDATVIATGGFSGL  177 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEECC----------------EEEEeCeEEECCCcCcCC
Confidence            468889999999999999976 79998875 68999988742                479999999999999976

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.46  E-value=0.00034  Score=62.71  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.++++ .||+|++++.|.+++.+ +++|+||.+.+    .+|+.       ..++|+.||+|+|..+.+
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~~  192 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGGL  192 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCccc
Confidence            346677777776 69999999999999885 78999998765    23432       368999999999998854

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.44  E-value=0.00055  Score=62.39  Aligned_cols=65  Identities=20%  Similarity=0.308  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++ .|+++++++.+.+|+.+ +++|+||...+.   .+|..       ..|.|+.||+|+|..+.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEM---AEGRL-------VTILADAVVLATGGAGRV  197 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEc---CCCcE-------EEEecCEEEEcCCCCccc
Confidence            4678889998887 48999999999999986 789999976431   23432       479999999999999865

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.43  E-value=0.00039  Score=62.35  Aligned_cols=63  Identities=27%  Similarity=0.478  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++. ||+|++++.|.+|+.+ +++|+||.+.+     ++..       ..+.|+.||+|+|..+.+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-----~~~~-------~~i~Ak~VVLATGG~~~~  199 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAAT-----AGGP-------VVLPARAVVLATGGIGGL  199 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEe-----CCeE-------EEEECCEEEEcCCCCcCC
Confidence            45777888888875 9999999999999875 78999998764     1211       268999999999998754

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.43  E-value=0.00053  Score=62.49  Aligned_cols=65  Identities=18%  Similarity=0.361  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++.+. |+++++++.+++|+.+ +|+|+||...+.   .+|..       ..++|+.||+|+|..+.+
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV  198 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEc---CCCcE-------EEEECCEEEECCCCCcCC
Confidence            35677888888775 8999999999999986 799999876431   23432       379999999999999865

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.39  E-value=0.00056  Score=62.84  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=50.1

Q ss_pred             EEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .++|..|.++|.+.+++. |++++. ..|.+++.+ +++|+||.+.+               |..|.|+.||+|+|.++
T Consensus        96 QiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e-~grV~GV~t~d---------------G~~I~Ak~VIlATGTFL  157 (618)
T PRK05192         96 QADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVE-NGRVVGVVTQD---------------GLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             hcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEec-CCEEEEEEECC---------------CCEEECCEEEEeeCcch
Confidence            567777888888888775 899864 579999886 78999999975               46899999999999764

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.38  E-value=0.00043  Score=62.76  Aligned_cols=63  Identities=27%  Similarity=0.260  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHH-CCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+...|.+++++ .||+|++++.|.+|+.++ +|+|+||.+.+     +|..       ..+.||.||+|+|..+.
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~  198 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQ  198 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCcc
Confidence            3567788888876 599999999999999863 38999998753     3322       25899999999998754

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.36  E-value=0.00065  Score=58.62  Aligned_cols=68  Identities=18%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...+.|..|.+.|.+.+..  +.++.+++|+++..++ +.+ .|.+.+               |..+.|+.||+|+|.+|
T Consensus        99 ~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~-~~~-~v~~~~---------------g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        99 QSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQA-EEV-QVLFTD---------------GTEYRCDLLIGADGIKS  159 (414)
T ss_pred             cccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecC-CcE-EEEEcC---------------CCEEEeeEEEECCCccH
Confidence            3578999999999987743  5678899999998753 333 355543               35799999999999999


Q ss_pred             ccchHHH
Q psy9486         141 HLTKSLS  147 (165)
Q Consensus       141 ~l~~~l~  147 (165)
                      .+.+.+.
T Consensus       160 ~vR~~l~  166 (414)
T TIGR03219       160 ALRDYVL  166 (414)
T ss_pred             HHHHHhc
Confidence            9877654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.36  E-value=0.00065  Score=61.67  Aligned_cols=65  Identities=25%  Similarity=0.308  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++ .||++++++.|.+++.+ +++|+||.+.+.   .+|+.       ..|.|+.||+|+|..+.+
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~  202 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL  202 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence            3467788888877 69999999999999986 689999876431   13321       268999999999998754

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.35  E-value=0.0012  Score=55.63  Aligned_cols=62  Identities=21%  Similarity=0.280  Sum_probs=49.7

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .|+ ++-..+...+.+.+.+.|+++++.++|+++..+ ++. +.|.+.+               | ++.|+.||+|+|.+
T Consensus       143 ~g~-v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g-~~~a~~vV~A~G~~  203 (376)
T PRK11259        143 GGF-LRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTAD---------------G-TYEAKKLVVSAGAW  203 (376)
T ss_pred             CCE-EcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCC---------------C-EEEeeEEEEecCcc
Confidence            344 456677888889999999999999999999885 443 4577654               3 79999999999998


Q ss_pred             c
Q psy9486         140 G  140 (165)
Q Consensus       140 s  140 (165)
                      +
T Consensus       204 ~  204 (376)
T PRK11259        204 V  204 (376)
T ss_pred             h
Confidence            6

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.32  E-value=0.00093  Score=61.44  Aligned_cols=65  Identities=18%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.|...+++.+++|++++.|.+++.+++  |+|+||.+.+.   .+|+.       ..|.||.||+|+|.++.+
T Consensus       127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l  193 (614)
T TIGR02061       127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNV---RANEV-------HVFKAKTVIVAAGGAVNV  193 (614)
T ss_pred             hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEe---CCCcE-------EEEECCEEEECCCccccc
Confidence            4555667777788899999999999998633  79999977431   23432       369999999999998743

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG2844|consensus

Probab=97.31  E-value=0.00038  Score=64.25  Aligned_cols=79  Identities=13%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +++-..+++.|+..|++.||.|++.+.|++|..+ ++++.||+|..                ..|+|..||.|+|.|+  
T Consensus       183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~----------------G~iet~~~VNaaGvWA--  243 (856)
T KOG2844|consen  183 VMDPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPH----------------GSIETECVVNAAGVWA--  243 (856)
T ss_pred             ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccC----------------cceecceEEechhHHH--
Confidence            7888899999999999999999999999999886 45556999975                3799999999999997  


Q ss_pred             chHHHhhcCCCCCCCCCCC
Q psy9486         143 TKSLSSRFNLRGQCMSSGP  161 (165)
Q Consensus       143 ~~~l~~~~gl~~~~~~~~~  161 (165)
                       +.+-+..|+..+.-|=||
T Consensus       244 -r~Vg~m~gvkvPL~p~~H  261 (856)
T KOG2844|consen  244 -REVGAMAGVKVPLVPMHH  261 (856)
T ss_pred             -HHhhhhcCCcccceeeee
Confidence             565555676655555443

>PLN02815 L-aspartate oxidase

Probab=97.30  E-value=0.00069  Score=62.02  Aligned_cols=66  Identities=24%  Similarity=0.361  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCC---cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g---~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++. |++|++++.+.+|+.+++|   +|+||.+.+.   .+|..       ..|.||.||+|+|..+.+
T Consensus       155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~  224 (594)
T PLN02815        155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDT---RTGEV-------VRFISKVTLLASGGAGHI  224 (594)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEc---CCCeE-------EEEEeceEEEcCCcceee
Confidence            45777888888875 9999999999999986444   3899987531   23432       368999999999988754

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.28  E-value=0.0012  Score=61.34  Aligned_cols=66  Identities=14%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCE-EecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVE-IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~-i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ++.|+|..|.+.|++.   .|.+ ++.+++|+++..+ ++.|. |.+.+               |.++.|++||.|+|++
T Consensus       188 ~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~-~d~Vt-V~~~d---------------G~ti~aDlVVGADG~~  247 (668)
T PLN02927        188 TRVISRMTLQQILARA---VGEDVIRNESNVVDFEDS-GDKVT-VVLEN---------------GQRYEGDLLVGADGIW  247 (668)
T ss_pred             EEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEe-CCEEE-EEECC---------------CCEEEcCEEEECCCCC
Confidence            6799999999999654   4444 5678899999775 45554 55554               3579999999999999


Q ss_pred             cccchHH
Q psy9486         140 GHLTKSL  146 (165)
Q Consensus       140 s~l~~~l  146 (165)
                      |.+.+.+
T Consensus       248 S~vR~~l  254 (668)
T PLN02927        248 SKVRNNL  254 (668)
T ss_pred             cHHHHHh
Confidence            9887765

>KOG2820|consensus

Probab=97.28  E-value=0.0016  Score=56.08  Aligned_cols=73  Identities=27%  Similarity=0.389  Sum_probs=58.6

Q ss_pred             CCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEE-cCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486          57 NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY-HGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA  135 (165)
Q Consensus        57 ~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~-~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A  135 (165)
                      ++.+| ++...+--+.|..+|+++||.|+.+..|+.+.+ ++.+.+++|+|.+               |..+.||.+|+|
T Consensus       144 n~~gG-vi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t  207 (399)
T KOG2820|consen  144 NESGG-VINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFT  207 (399)
T ss_pred             ccccc-EeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEE
Confidence            34556 455666677889999999999999999999875 3457788999987               457999999999


Q ss_pred             ccCCcccchHHHh
Q psy9486         136 EGCHGHLTKSLSS  148 (165)
Q Consensus       136 ~G~~s~l~~~l~~  148 (165)
                      .|+|-   .++.+
T Consensus       208 ~GaWi---~klL~  217 (399)
T KOG2820|consen  208 VGAWI---NKLLP  217 (399)
T ss_pred             ecHHH---HhhcC
Confidence            99995   56555

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.26  E-value=0.001  Score=61.10  Aligned_cols=63  Identities=19%  Similarity=0.356  Sum_probs=51.5

Q ss_pred             EEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..++|..+-++|.+.+++. |++++.+ .|.+++.+++++|+||.+.+               |..|.|+.||+|+|.+.
T Consensus        91 aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~---------------G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        91 AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD---------------GLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC---------------CCEEECCEEEEccCccc
Confidence            3667777778888888887 7888765 78888775468999999975               45899999999999995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.25  E-value=0.0011  Score=59.85  Aligned_cols=66  Identities=17%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCceeEEEEcC-----CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          67 GHVVKWLGEQAEAM-GVEIYPGIPASEVLYHG-----DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        67 ~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~-----~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..+...|.+++++. ||+|++++.|.+++.++     +++|+||...+.   .+|+.       ..|.|+.||+|+|..+
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKERV-------ETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEEC---CCCcE-------EEEecCeEEECCCCCC
Confidence            46778888888875 89999999999998853     389999987541   13432       3699999999999988


Q ss_pred             cc
Q psy9486         141 HL  142 (165)
Q Consensus       141 ~l  142 (165)
                      .+
T Consensus       208 ~~  209 (536)
T PRK09077        208 KV  209 (536)
T ss_pred             CC
Confidence            54

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.25  E-value=0.0014  Score=55.41  Aligned_cols=58  Identities=21%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      +..++-..+...|++.+.+. |++|+++++|.+|..   +   +|.+.+               | .++|+.||+|+|++
T Consensus       139 ~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~  196 (365)
T TIGR03364       139 ELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGAD  196 (365)
T ss_pred             CeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCC
Confidence            34567778889999988875 999999999999943   2   566754               2 68999999999998


Q ss_pred             c
Q psy9486         140 G  140 (165)
Q Consensus       140 s  140 (165)
                      +
T Consensus       197 s  197 (365)
T TIGR03364       197 F  197 (365)
T ss_pred             h
Confidence            6

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.21  E-value=0.0013  Score=60.55  Aligned_cols=65  Identities=17%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHC--------C-----CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEE
Q psy9486          67 GHVVKWLGEQAEAM--------G-----VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI  133 (165)
Q Consensus        67 ~~~d~~L~~~A~~~--------G-----v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI  133 (165)
                      ..+...|.+++++.        |     |+|++++.|.+|+.+ +|+|+||...+.   .+|+.       ..|.|+.||
T Consensus       138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VV  206 (626)
T PRK07803        138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWR---ESGRF-------VLFEAPAVV  206 (626)
T ss_pred             HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEEC---CCCeE-------EEEEcCeEE
Confidence            45677888888777        8     999999999999986 789999876431   23322       369999999


Q ss_pred             EcccCCccc
Q psy9486         134 FAEGCHGHL  142 (165)
Q Consensus       134 ~A~G~~s~l  142 (165)
                      +|+|..+.+
T Consensus       207 lATGG~~~~  215 (626)
T PRK07803        207 LATGGIGKS  215 (626)
T ss_pred             ECCCcccCC
Confidence            999987654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.21  E-value=0.0017  Score=58.09  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      ++-..+...|++.|++.|+++++.++|+++..+ ++ .++|.+.+.   .+|+.       .+|+|+.||.|+|+|+   
T Consensus       152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~---~~g~~-------~~i~a~~VVnAaG~wa---  216 (508)
T PRK12266        152 VDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDT---ATGKR-------YTVRARALVNAAGPWV---  216 (508)
T ss_pred             cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEc---CCCCE-------EEEEcCEEEECCCccH---
Confidence            566778888999999999999999999999874 34 356766531   12221       3799999999999997   


Q ss_pred             hHHHhh
Q psy9486         144 KSLSSR  149 (165)
Q Consensus       144 ~~l~~~  149 (165)
                      .++.+.
T Consensus       217 ~~l~~~  222 (508)
T PRK12266        217 KQFLDD  222 (508)
T ss_pred             HHHHhh
Confidence            455443

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.18  E-value=0.0028  Score=58.43  Aligned_cols=78  Identities=13%  Similarity=0.143  Sum_probs=55.7

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..++.+..+.++|.+.+.+.|+  ++..+++++++..++++ .-+.|.+.+..-+.+|+.       .+++||+||.|+|
T Consensus       135 ~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~-------~tv~A~~lVGaDG  207 (634)
T PRK08294        135 HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEE-------ETVRAKYVVGCDG  207 (634)
T ss_pred             cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCce-------EEEEeCEEEECCC
Confidence            3678899999999999999874  77889999999875322 212344432000012321       4799999999999


Q ss_pred             CCcccchH
Q psy9486         138 CHGHLTKS  145 (165)
Q Consensus       138 ~~s~l~~~  145 (165)
                      ++|.+.++
T Consensus       208 a~S~VR~~  215 (634)
T PRK08294        208 ARSRVRKA  215 (634)
T ss_pred             CchHHHHh
Confidence            99999777

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.17  E-value=0.0019  Score=57.24  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+.+++.|++|++++.|++|..+ ++++++|++.+               |.++.|+.||.|.+....+
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~  278 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLAD---------------GERLDADAVVSNADLHHTY  278 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence            578889999999999999999999999886 67888998875               4579999999998875443

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.16  E-value=0.0014  Score=60.46  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .++-..+...|.+.+++ |+++++++.|+++..+ ++.+. |.+.+               |..+.|+.||+|+|+++.
T Consensus       404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~---------------g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAG---------------GTLASAPVVVLANGHDAA  464 (662)
T ss_pred             eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECC---------------CcEEECCEEEECCCCCcc
Confidence            45778999999999999 9999999999999875 45544 66654               345789999999999973

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.15  E-value=0.0028  Score=54.48  Aligned_cols=64  Identities=20%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..+|+|..|+++|.+++.+.| .++.++.|.+|..+. + .+.|.+.+               |.+++|++||+|+|..+
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~-~-~~~v~~~~---------------g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETG-D-GVLVVLAD---------------GRTIRARVVVDARGPSS  142 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecC-c-eEEEEECC---------------CCEEEeeEEEECCCccc
Confidence            459999999999999999544 567788999997753 3 34466665               46899999999999776


Q ss_pred             cc
Q psy9486         141 HL  142 (165)
Q Consensus       141 ~l  142 (165)
                      ..
T Consensus       143 ~~  144 (374)
T PF05834_consen  143 PK  144 (374)
T ss_pred             cc
Confidence            53

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>KOG4254|consensus

Probab=97.13  E-value=0.00076  Score=59.93  Aligned_cols=61  Identities=23%  Similarity=0.399  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+-..+++-|+++|++|+++.+|.+|+.| +|+++||+..+               |.++++|+||--++.|-..
T Consensus       263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF  323 (561)
T ss_pred             hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence            4577788999999999999999999999997 69999999987               6899999999888877554

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.11  E-value=0.0051  Score=55.34  Aligned_cols=82  Identities=15%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             CCcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+..|+-..+.+.|.+.+.+ .|++|+++++|.++..++++.+. |.+.+.   .+|+       ..+++|+.||+|+|
T Consensus       176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t---~~g~-------~~~i~Ad~VV~AAG  244 (497)
T PRK13339        176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDR---NTGE-------KREQVADYVFIGAG  244 (497)
T ss_pred             CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEec---CCCc-------eEEEEcCEEEECCC
Confidence            345678888999999999965 59999999999999875344433 332110   0110       02699999999999


Q ss_pred             CCcccchHHHhhcCCCC
Q psy9486         138 CHGHLTKSLSSRFNLRG  154 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~~  154 (165)
                      +|+   ..+.+++|+..
T Consensus       245 awS---~~La~~~Gi~~  258 (497)
T PRK13339        245 GGA---IPLLQKSGIPE  258 (497)
T ss_pred             cch---HHHHHHcCCCc
Confidence            998   67777788753

>PRK07236 hypothetical protein; Provisional

Probab=97.07  E-value=0.0022  Score=54.89  Aligned_cols=64  Identities=14%  Similarity=0.058  Sum_probs=48.8

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      +.+..+.+.|.+..  .+++|+.+++|+++..+ ++.|. |...+               |.+++|++||.|+|.+|.+.
T Consensus        97 ~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vIgADG~~S~vR  157 (386)
T PRK07236         97 TSWNVLYRALRAAF--PAERYHLGETLVGFEQD-GDRVT-ARFAD---------------GRRETADLLVGADGGRSTVR  157 (386)
T ss_pred             cCHHHHHHHHHHhC--CCcEEEcCCEEEEEEec-CCeEE-EEECC---------------CCEEEeCEEEECCCCCchHH
Confidence            56778888887643  35789999999999875 34433 55543               35899999999999999997


Q ss_pred             hHH
Q psy9486         144 KSL  146 (165)
Q Consensus       144 ~~l  146 (165)
                      +.+
T Consensus       158 ~~l  160 (386)
T PRK07236        158 AQL  160 (386)
T ss_pred             HHh
Confidence            774

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.05  E-value=0.0029  Score=55.31  Aligned_cols=72  Identities=24%  Similarity=0.269  Sum_probs=55.3

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc---
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH---  141 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~---  141 (165)
                      +...+.+.|.+++++.||+|++.++|.++..+ + ....+.+.+               |.+|+|+.+|+|+|..|.   
T Consensus       109 kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~---------------g~~i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         109 KASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSS---------------GETVKCDSLILATGGKSWPKL  171 (408)
T ss_pred             chHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCC---------------CCEEEccEEEEecCCcCCCCC
Confidence            34567778899999999999999999999885 3 334566665               347999999999995553   


Q ss_pred             ----cchHHHhhcCCC
Q psy9486         142 ----LTKSLSSRFNLR  153 (165)
Q Consensus       142 ----l~~~l~~~~gl~  153 (165)
                          ..-++.+++|+.
T Consensus       172 Gstg~gy~iA~~~G~~  187 (408)
T COG2081         172 GSTGFGYPIARQFGHT  187 (408)
T ss_pred             CCCchhhHHHHHcCCc
Confidence                235666668875

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.02  E-value=0.0033  Score=54.86  Aligned_cols=64  Identities=20%  Similarity=0.237  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..+.+.|.+.+++.|++|.++++|++|..+++++|+||++.+    ..|+..      .++.||.||.|...+.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~~~------~~~~a~~VI~a~p~~~  276 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQRR------FEVTADAYVSAMPVDI  276 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCCce------eEEECCEEEEcCCHHH
Confidence            456778888888899999999999999876577899998864    111110      1689999999997654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=96.97  E-value=0.0049  Score=52.06  Aligned_cols=68  Identities=24%  Similarity=0.369  Sum_probs=54.3

Q ss_pred             EEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .++-..+.+.|++.++++| +.++..+.+..+..+ . ++.+|+|..               | ++.|+.||+|+|+|+ 
T Consensus       152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g-~i~a~~vv~a~G~~~-  212 (387)
T COG0665         152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------G-TIEADKVVLAAGAWA-  212 (387)
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------c-cEEeCEEEEcCchHH-
Confidence            4555788899999999999 566668888888764 3 778899986               3 599999999999997 


Q ss_pred             cchHHHhhcC
Q psy9486         142 LTKSLSSRFN  151 (165)
Q Consensus       142 l~~~l~~~~g  151 (165)
                        ..+...++
T Consensus       213 --~~l~~~~~  220 (387)
T COG0665         213 --GELAATLG  220 (387)
T ss_pred             --HHHHHhcC
Confidence              55555566

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.87  E-value=0.0017  Score=53.29  Aligned_cols=72  Identities=22%  Similarity=0.354  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHC-CCEEecCCceeEEEEc-CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          69 VVKWLGEQAEAM-GVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        69 ~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ...|| ..|.+. |++|++++.|++|+++ ++++++||+..+    .++...     -..+.||.||+|.|+-.  +.+|
T Consensus       195 ~~~~L-~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~----~~~~~~-----~~~~~ak~VIlaAGai~--Tp~L  262 (296)
T PF00732_consen  195 ATTYL-PPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD----NDGGVQ-----RRIVAAKEVILAAGAIG--TPRL  262 (296)
T ss_dssp             HHHHH-HHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE----TTTSEE-----EEEEEEEEEEE-SHHHH--HHHH
T ss_pred             hhccc-chhhccCCccEEcCcEEEEEeeeccccceeeeeeee----cCCcce-----eeeccceeEEeccCCCC--Chhh
Confidence            44454 455554 9999999999999885 467999999987    334300     13678899999999644  4566


Q ss_pred             HhhcCC
Q psy9486         147 SSRFNL  152 (165)
Q Consensus       147 ~~~~gl  152 (165)
                      +-.-|+
T Consensus       263 Ll~SGi  268 (296)
T PF00732_consen  263 LLRSGI  268 (296)
T ss_dssp             HHHTTE
T ss_pred             hccccc
Confidence            655565

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.80  E-value=0.0041  Score=55.47  Aligned_cols=57  Identities=30%  Similarity=0.415  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+.+.+.|++.|++.|++|+++++|++|+.+ +|+.++|.+.+               |..+.||.||.+...
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~---------------g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSD---------------GENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccc---------------cceeccceeEecCch
Confidence            4578899999999999999999999999996 67766676664               236899999987776

>TIGR00275 flavoprotein, HI0933 family

Probab=96.78  E-value=0.0088  Score=51.92  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc----
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH----  141 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~----  141 (165)
                      ...+.+.|.+.+++.|+++++++.|+++..+ ++ .+.|++..                .++.|+.||+|+|.++.    
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~----------------~~i~ad~VIlAtG~~s~p~~g  165 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSG----------------GEYEADKVILATGGLSYPQLG  165 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECC----------------cEEEcCEEEECCCCcccCCCC
Confidence            4678889999999999999999999999764 33 45566632                47999999999998652    


Q ss_pred             ---cchHHHhhcCCC
Q psy9486         142 ---LTKSLSSRFNLR  153 (165)
Q Consensus       142 ---l~~~l~~~~gl~  153 (165)
                         -.-++.+++|..
T Consensus       166 s~G~g~~la~~lG~~  180 (400)
T TIGR00275       166 STGDGYEIAESLGHT  180 (400)
T ss_pred             CCcHHHHHHHHCCCC
Confidence               123556667774

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=96.75  E-value=0.0084  Score=53.14  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.+-+.|++.++..|++++++++|++|.+++++++++|++.+               |.+++|+.||.....+.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p  290 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP  290 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence            3578889999999999999999999999987567899999876               46899999998666553

>PLN02612 phytoene desaturase

Probab=96.74  E-value=0.0073  Score=54.93  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+...|.+..++.|++|+++++|++|..++++++++|++.+               |..+.||.||.|...
T Consensus       309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~  364 (567)
T PLN02612        309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence            46677788888899999999999999986678788888865               457999999999864

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.71  E-value=0.0056  Score=55.97  Aligned_cols=67  Identities=13%  Similarity=0.126  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEc-CC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYH-GD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      .+..-|.+.+++.||+|+++++|++|+.+ ++  ++|+||.+...|   .+..+      ....+|.||+|+|.-..-+
T Consensus       227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~---~~~~I------~l~~~DlVivTnGs~t~ns  296 (576)
T PRK13977        227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNG---KEETI------DLTEDDLVFVTNGSITESS  296 (576)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCC---ceeEE------EecCCCEEEEeCCcCcccc
Confidence            35566899999999999999999999985 23  689999886422   11111      2356799999999776553

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=96.70  E-value=0.0079  Score=53.19  Aligned_cols=63  Identities=11%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ...+...|.+.+++.|++|+++++|++|..+ ++++.||.+.+.   ..|+       +.++.||.||.|.-..
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence            4578889999999999999999999999986 577888877541   0110       1479999999998864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.67  E-value=0.0019  Score=60.66  Aligned_cols=61  Identities=13%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.+.|..|.+.|.++|+++||+|+++++|+++.             +                ..+.||+||+|+|.+|.
T Consensus        92 ~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~-------------~----------------~~~~~D~VVgADG~~S~  142 (765)
T PRK08255         92 AGIGRKRLLNILQARCEELGVKLVFETEVPDDQ-------------A----------------LAADADLVIASDGLNSR  142 (765)
T ss_pred             ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchh-------------h----------------hhcCCCEEEEcCCCCHH
Confidence            358999999999999999999999998776541             1                12578999999999999


Q ss_pred             cchHHHhhcC
Q psy9486         142 LTKSLSSRFN  151 (165)
Q Consensus       142 l~~~l~~~~g  151 (165)
                      +.+++...++
T Consensus       143 vR~~~~~~~~  152 (765)
T PRK08255        143 IRTRYADTFQ  152 (765)
T ss_pred             HHHHHHhhcC
Confidence            9777654444

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.66  E-value=0.012  Score=51.30  Aligned_cols=71  Identities=13%  Similarity=0.122  Sum_probs=51.6

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc---
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH---  141 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~---  141 (165)
                      ....+-..|..+++++||+|+++++|++|  + ++. .+|.+..      +        +..++|+.||+|+|..+.   
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~------~--------~~~~~a~~vIlAtGG~s~p~~  145 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPD------G--------QSTIEADAVVLALGGASWSQL  145 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECC------C--------ceEEecCEEEEcCCCcccccc
Confidence            34566778899999999999999999998  3 333 5677643      0        136999999999998652   


Q ss_pred             ----cchHHHhhcCCC
Q psy9486         142 ----LTKSLSSRFNLR  153 (165)
Q Consensus       142 ----l~~~l~~~~gl~  153 (165)
                          -.-++.+++|..
T Consensus       146 Gs~g~gy~la~~lGh~  161 (376)
T TIGR03862       146 GSDGAWQQVLDQRGVS  161 (376)
T ss_pred             CCCcHHHHHHHHCCCc
Confidence                113566667764

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.62  E-value=0.0076  Score=57.64  Aligned_cols=63  Identities=27%  Similarity=0.275  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHH----CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEA----MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~----~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+.|.+.+.+    .++.+++.+.+.+++.+ +|+|+||...+.   .+|+.       ..|.||.||+|||..+.+
T Consensus       141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~  207 (897)
T PRK13800        141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL  207 (897)
T ss_pred             HHHHHHHHHHHhhhcCCcEEEeceeeEEEEee-CCEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence            44556666554    37899999999999886 789999987441   24443       369999999999998865

>TIGR01810 betA choline dehydrogenase

Probab=96.48  E-value=0.0095  Score=53.47  Aligned_cols=73  Identities=11%  Similarity=0.090  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHH-HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486          66 LGHVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK  144 (165)
Q Consensus        66 r~~~d~~L~~~A~-~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~  144 (165)
                      |......++..|+ +.|++|++++.|++|+++ +++++||++.+     .|..      ...+.||.||+|.|+..  +.
T Consensus       192 r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~-----~~~~------~~~~~ak~VIlaAGai~--SP  257 (532)
T TIGR01810       192 RVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKK-----GGRK------EHTEANKEVILSAGAIN--SP  257 (532)
T ss_pred             EEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEe-----CCcE------EEEEEeeeEEEccCCCC--CH
Confidence            4333333345565 567999999999999996 78999998865     1211      12468999999999833  24


Q ss_pred             HHHhhcCC
Q psy9486         145 SLSSRFNL  152 (165)
Q Consensus       145 ~l~~~~gl  152 (165)
                      +|+..-|+
T Consensus       258 ~LLl~SGI  265 (532)
T TIGR01810       258 QLLQLSGI  265 (532)
T ss_pred             HHHHhcCC
Confidence            44444444

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=0.0028  Score=57.51  Aligned_cols=62  Identities=24%  Similarity=0.421  Sum_probs=48.4

Q ss_pred             cEEEEhHHHHHHHHHHHHH------CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486          61 NYVVRLGHVVKWLGEQAEA------MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF  134 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~------~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~  134 (165)
                      +--..|...|+++++++.+      .+..|+.+ .|.+++.+++.+|+||.|.+               |..|.|+.||+
T Consensus        89 AVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~---------------G~~~~a~aVVl  152 (621)
T COG0445          89 AVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD---------------GPEFHAKAVVL  152 (621)
T ss_pred             hhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC---------------CCeeecCEEEE
Confidence            3345688889888888765      37777755 68889886334699999986               67999999999


Q ss_pred             cccC
Q psy9486         135 AEGC  138 (165)
Q Consensus       135 A~G~  138 (165)
                      ++|.
T Consensus       153 TTGT  156 (621)
T COG0445         153 TTGT  156 (621)
T ss_pred             eecc
Confidence            9993

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.47  E-value=0.02  Score=51.14  Aligned_cols=81  Identities=21%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..|.-|+=+.+.+-|.+.+++. |+++++++.|++|...+||+ +-|.+.+.   .+|+.       .+++|++|++.+|
T Consensus       173 ~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~---~~~~~-------~~v~a~FVfvGAG  241 (488)
T PF06039_consen  173 EEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDL---KTGEK-------REVRAKFVFVGAG  241 (488)
T ss_pred             CCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEec---CCCCe-------EEEECCEEEECCc
Confidence            3467788889999999999997 99999999999999976674 33554431   23332       4899999999999


Q ss_pred             CCcccchHHHhhcCCC
Q psy9486         138 CHGHLTKSLSSRFNLR  153 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~  153 (165)
                      ..+   -.|..+.|+.
T Consensus       242 G~a---L~LLqksgi~  254 (488)
T PF06039_consen  242 GGA---LPLLQKSGIP  254 (488)
T ss_pred             hHh---HHHHHHcCCh
Confidence            886   4566678874

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.06  E-value=0.043  Score=47.72  Aligned_cols=67  Identities=21%  Similarity=0.277  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+++.+.+++.|+++++++++.++..  ++++.++.+.+                .++.|+.||+|+|.....  .+
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~----------------~~i~~d~vi~a~G~~p~~--~~  250 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDK----------------GEYEADVVIVATGVKPNT--EF  250 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCC----------------CEEEcCEEEECcCCCcCH--HH
Confidence            35666778888999999999999999943  45666666543                379999999999987643  44


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       251 l~~~gl~  257 (444)
T PRK09564        251 LEDTGLK  257 (444)
T ss_pred             HHhcCcc
Confidence            5556653

>KOG0042|consensus

Probab=96.04  E-value=0.0038  Score=56.69  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=58.5

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK  144 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~  144 (165)
                      +-..++-.++=-|...|+.+..-+.|.+++.+.+++|.|+++.|.   ..|+.       .+|+||.||.|+|..+---+
T Consensus       222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~e-------~~I~Ak~VVNATGpfsDsIr  291 (680)
T KOG0042|consen  222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGKE-------YEIRAKVVVNATGPFSDSIR  291 (680)
T ss_pred             chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCcE-------EEEEEEEEEeCCCCccHHHH
Confidence            344566677888999999999999999999988899999998873   45654       47999999999999874444


Q ss_pred             HHH
Q psy9486         145 SLS  147 (165)
Q Consensus       145 ~l~  147 (165)
                      +|.
T Consensus       292 ~Md  294 (680)
T KOG0042|consen  292 KMD  294 (680)
T ss_pred             hhc
Confidence            443

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.04  E-value=0.014  Score=52.41  Aligned_cols=66  Identities=21%  Similarity=0.341  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          66 LGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        66 r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      -..+.+.|.+++++ .++++++++.+.+|+.+ ++ .+.||.+.+    .+++.       ..|+|+.||+|+|.-+.|-
T Consensus       132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~----~~~~~-------~~~~a~~vVLATGG~g~ly  199 (518)
T COG0029         132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLN----RNGEL-------GTFRAKAVVLATGGLGGLY  199 (518)
T ss_pred             cHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEec----CCCeE-------EEEecCeEEEecCCCcccc
Confidence            35677889999988 89999999999999997 56 566998875    22211       4799999999999998663

>KOG2404|consensus

Probab=95.98  E-value=0.021  Score=49.29  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHC--CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          70 VKWLGEQAEAM--GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        70 d~~L~~~A~~~--Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      -..|-+.|.+.  =++|...++|.+|.. ++|+|.||+..+    .+|+..       .+.++.||+|+|..+.-.+.|.
T Consensus       146 ~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd----~sgek~-------~~~~~~VVlatGGf~ysd~~lL  213 (477)
T KOG2404|consen  146 STRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMD----ASGEKS-------KIIGDAVVLATGGFGYSDKELL  213 (477)
T ss_pred             HHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEc----CCCCcc-------ceecCceEEecCCcCcChHHHH
Confidence            33444445442  489999999999996 489999998876    677653       6889999999999997778998


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +.|+-+
T Consensus       214 Key~pe  219 (477)
T KOG2404|consen  214 KEYGPE  219 (477)
T ss_pred             HHhChh
Confidence            888643

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=95.94  E-value=0.043  Score=48.44  Aligned_cols=59  Identities=22%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ++.+.|.+..++.|++|+++++|.++..+ +++|..|.+.+      |.       ...+.||.||+|+|...
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRN------HG-------DIPLRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeC------Cc-------eEEEECCEEEEeCCCcc
Confidence            57778899999999999999999999875 56777765432      21       13699999999999753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.85  E-value=0.042  Score=50.70  Aligned_cols=70  Identities=19%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc---ccCCCCCCCCCCcCe--EEEcCEEEEcccCCcc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARGM--ELHAKVTIFAEGCHGH  141 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g---~~~~g~~~~~~~~g~--~i~Ak~VI~A~G~~s~  141 (165)
                      ...+.+++.||+|++++.+.++..+++|+|.||++..+-   .|.+|+..+.+.+|.  .+.+|.||+|.|....
T Consensus       511 ~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~  585 (654)
T PRK12769        511 KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH  585 (654)
T ss_pred             HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence            346778899999999999999987657899998864321   134454332222333  5999999999997754

>PRK07233 hypothetical protein; Provisional

Probab=95.84  E-value=0.044  Score=46.90  Aligned_cols=56  Identities=29%  Similarity=0.364  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++++..+                +..+.|+.||.|....
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~~----------------~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEVD----------------GEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEEeC----------------CceEECCEEEECCCHH
Confidence            357788899999999999999999999886 5666666543                2479999999999864

>PRK02106 choline dehydrogenase; Validated

Probab=95.73  E-value=0.026  Score=50.98  Aligned_cols=66  Identities=12%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             HHHHHH-HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486          73 LGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFN  151 (165)
Q Consensus        73 L~~~A~-~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g  151 (165)
                      ++..|. ..+++|++++.|.+|+++ +++++||+..+    .++..       ..+.||.||+|.|+..  +.+|+..-|
T Consensus       206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~----~~~~~-------~~~~ak~VILaaGai~--TP~LLl~SG  271 (560)
T PRK02106        206 YLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYER----GGGRE-------TARARREVILSAGAIN--SPQLLQLSG  271 (560)
T ss_pred             hhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEe----CCcEE-------EEEeeeeEEEccCCCC--CHHHHhhcC
Confidence            344454 467999999999999997 68899999875    12211       3578999999999765  344444445


Q ss_pred             C
Q psy9486         152 L  152 (165)
Q Consensus       152 l  152 (165)
                      +
T Consensus       272 I  272 (560)
T PRK02106        272 I  272 (560)
T ss_pred             C
Confidence            4

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.72  E-value=0.07  Score=47.26  Aligned_cols=77  Identities=21%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCC
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNL  152 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl  152 (165)
                      ..+.+++.||++++++.++++.-+ +++|++|+...+.. .+|.+...=....++.+|.||+|.|..... ..+.+.+|+
T Consensus       335 ~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~-~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~-~~l~~~~gl  411 (471)
T PRK12810        335 EVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTEL-GEGDFEPVEGSEFVLPADLVLLAMGFTGPE-AGLLAQFGV  411 (471)
T ss_pred             HHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEe-cCCCccccCCceEEEECCEEEECcCcCCCc-hhhccccCc
Confidence            567788899999999999999653 78999987653221 122111000012479999999999976542 223444554

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.64  E-value=0.052  Score=48.24  Aligned_cols=60  Identities=25%  Similarity=0.278  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcC--CC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~--~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.+-|.+..++.|++|+.+++|++|..++  ++  +|++|++.+ |   ++        +.++.||.||+|+..+.
T Consensus       221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g---~~--------~~~~~aD~VVlA~p~~~  284 (474)
T TIGR02732       221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-P---EG--------KKVIKADAYVAACDVPG  284 (474)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-C---Cc--------ceEEECCEEEECCChHH
Confidence            56667888888999999999999998853  23  378887753 0   11        13589999999999763

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>KOG2852|consensus

Probab=95.58  E-value=0.032  Score=47.43  Aligned_cols=68  Identities=13%  Similarity=0.176  Sum_probs=51.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .-++.-+.|+++++++|++.| |+++.+ .|.++. ++.+|+.+|--.+    ..+       +.....+..||+|.|.|
T Consensus       141 taqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPW  207 (380)
T KOG2852|consen  141 TAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPW  207 (380)
T ss_pred             cceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCC
Confidence            457899999999999999965 999887 688886 4467777764432    111       13467789999999999


Q ss_pred             cc
Q psy9486         140 GH  141 (165)
Q Consensus       140 s~  141 (165)
                      ++
T Consensus       208 Ts  209 (380)
T KOG2852|consen  208 TS  209 (380)
T ss_pred             ch
Confidence            73

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.52  E-value=0.11  Score=44.33  Aligned_cols=66  Identities=20%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                      +...+.+..++.|+++++++.+.++..+ ++. ..|.+.+               |.++.++.||+|+|.....  .+.+
T Consensus       185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~i~~D~vI~a~G~~p~~--~l~~  245 (377)
T PRK04965        185 VSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS---------------GRSIEVDAVIAAAGLRPNT--ALAR  245 (377)
T ss_pred             HHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC---------------CcEEECCEEEECcCCCcch--HHHH
Confidence            4456677788899999999999999764 232 3455544               4589999999999987643  3555


Q ss_pred             hcCCC
Q psy9486         149 RFNLR  153 (165)
Q Consensus       149 ~~gl~  153 (165)
                      ..|+.
T Consensus       246 ~~gl~  250 (377)
T PRK04965        246 RAGLA  250 (377)
T ss_pred             HCCCC
Confidence            56664

>PRK06116 glutathione reductase; Validated

Probab=95.50  E-value=0.073  Score=46.60  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      .+.+.+.+..++.||+++++++|.++..++++.+ .|.+.+               |.++.++.||+|+|......
T Consensus       209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~---------------g~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED---------------GETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC---------------CcEEEeCEEEEeeCCCcCCC
Confidence            3456677888899999999999999976534433 355543               35799999999999887664

>PRK07208 hypothetical protein; Provisional

Probab=95.50  E-value=0.064  Score=47.12  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+...|.+.+++.|++|+++++|++|..++++.++++...+    .+|+.       .++.||.||.|.-.+.
T Consensus       219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~----~~g~~-------~~~~ad~VI~a~p~~~  280 (479)
T PRK07208        219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVND----TDGTE-------ETVTADQVISSMPLRE  280 (479)
T ss_pred             hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEc----CCCCE-------EEEEcCEEEECCCHHH
Confidence            56778899999999999999999999997445455554432    12321       2689999999877553

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.27  E-value=0.12  Score=45.55  Aligned_cols=80  Identities=18%  Similarity=0.144  Sum_probs=51.7

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc---ccCCCCCCCCCCc--CeEEEcCEEEEcccCCcccchHH
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g---~~~~g~~~~~~~~--g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      +..+.+++.||+|++++.+.++.-+++|+|++|.+..+-   -+.+|+..+...+  ...+.+|.||.|.|.....  .+
T Consensus       314 ~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~--~~  391 (449)
T TIGR01316       314 EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP--IM  391 (449)
T ss_pred             HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc--hh
Confidence            345678899999999999999976556888888765210   1123321111111  2369999999999987643  34


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       392 l~~~gl~  398 (449)
T TIGR01316       392 AETTRLK  398 (449)
T ss_pred             hhccCcc
Confidence            4445553

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.24  E-value=0.13  Score=49.24  Aligned_cols=67  Identities=24%  Similarity=0.345  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhh
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR  149 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~  149 (165)
                      ...|.++.++.||+|++++.+++|.-+.++.+..|.+.+               |.++.+|.||+|.|.....  .|.+.
T Consensus       190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d---------------G~~i~~D~Vv~A~G~rPn~--~L~~~  252 (847)
T PRK14989        190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD---------------GSELEVDFIVFSTGIRPQD--KLATQ  252 (847)
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC---------------CCEEEcCEEEECCCcccCc--hHHhh
Confidence            345677788899999999999999754234455666654               4689999999999988865  36666


Q ss_pred             cCCC
Q psy9486         150 FNLR  153 (165)
Q Consensus       150 ~gl~  153 (165)
                      .|+.
T Consensus       253 ~Gl~  256 (847)
T PRK14989        253 CGLA  256 (847)
T ss_pred             cCcc
Confidence            7764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.22  E-value=0.12  Score=46.39  Aligned_cols=59  Identities=24%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++-++|.+.+++.|++++++++|.++..+ ++. ..|.+.+               |.++.|+.||+|+|+..
T Consensus       264 ~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~-~~~-~~V~~~~---------------g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        264 EGPKLAAALEEHVKEYDVDIMNLQRASKLEPA-AGL-IEVELAN---------------GAVLKAKTVILATGARW  322 (517)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCe-EEEEECC---------------CCEEEcCEEEECCCCCc
Confidence            45578889999999999999999999999875 232 3455543               35799999999999865

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.19  E-value=0.11  Score=41.95  Aligned_cols=60  Identities=30%  Similarity=0.334  Sum_probs=45.3

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ++...+-..+.+.+++.|+++++ +.|.++..+ ++. ..|.+.+               +.++++|.+|+|+|.+..
T Consensus        54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~-~~v~~~~---------------~~~~~~d~liiAtG~~~~  113 (300)
T TIGR01292        54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRP-FKVKTGD---------------GKEYTAKAVIIATGASAR  113 (300)
T ss_pred             CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCe-eEEEeCC---------------CCEEEeCEEEECCCCCcc
Confidence            44457778889999999999998 889988764 332 3355543               347999999999998753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.16  E-value=0.11  Score=48.01  Aligned_cols=68  Identities=26%  Similarity=0.332  Sum_probs=46.9

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCcC--eEEEcCEEEEcccCCcc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH  141 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~  141 (165)
                      ...|++.||+|++.+.++++..+++|+|.+|++..+  | -|.+|+..+...+|  ..+.||.||+|.|....
T Consensus       496 ~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~  568 (639)
T PRK12809        496 VVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAH  568 (639)
T ss_pred             HHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCC
Confidence            456788999999999999998765788998865322  1 12345432222223  36899999999996653

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.11  E-value=0.12  Score=45.23  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+...+.+..++.|+++++++.|.++..+ ++.+. +.+.+      |..       .++.+|.||+|+|........+.
T Consensus       212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~------g~~-------~~i~~D~vi~a~G~~p~~~~l~~  276 (461)
T TIGR01350       212 EVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKG------GET-------ETLTGEKVLVAVGRKPNTEGLGL  276 (461)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeC------CcE-------EEEEeCEEEEecCCcccCCCCCc
Confidence            45667778888999999999999999775 44443 44432      210       37999999999999887643233


Q ss_pred             hhcCC
Q psy9486         148 SRFNL  152 (165)
Q Consensus       148 ~~~gl  152 (165)
                      +..++
T Consensus       277 ~~~gl  281 (461)
T TIGR01350       277 ENLGV  281 (461)
T ss_pred             HhhCc
Confidence            44554

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.03  E-value=0.15  Score=48.23  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhh
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR  149 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~  149 (165)
                      ..++.+..++.||++++++.++++.-  ++++.+|.+.+               |.++.+|.||.|.|.....  .+.+.
T Consensus       185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~d---------------G~~i~~D~Vi~a~G~~Pn~--~la~~  245 (785)
T TIGR02374       185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKD---------------GSSLEADLIVMAAGIRPND--ELAVS  245 (785)
T ss_pred             HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECC---------------CCEEEcCEEEECCCCCcCc--HHHHh
Confidence            44567777889999999999999864  45677787765               4589999999999988754  34455


Q ss_pred             cCCC
Q psy9486         150 FNLR  153 (165)
Q Consensus       150 ~gl~  153 (165)
                      .||.
T Consensus       246 ~gl~  249 (785)
T TIGR02374       246 AGIK  249 (785)
T ss_pred             cCCc
Confidence            6654

>PRK12831 putative oxidoreductase; Provisional

Probab=94.99  E-value=0.12  Score=45.90  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc---cccCCCCCCCCCCcC--eEEEcCEEEEcccCCccc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV---GIAKDGSPKDTFARG--MELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~---g~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.|++.||+|++.+.+.+++.+++|+|.+|++..+   ..|.+|...+...+|  .++.||.||+|.|.....
T Consensus       325 ~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~  398 (464)
T PRK12831        325 VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP  398 (464)
T ss_pred             HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh
Confidence            346778999999999999998765789999876532   122344322211122  269999999999987654

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=94.97  E-value=0.035  Score=50.72  Aligned_cols=65  Identities=29%  Similarity=0.445  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...|.+++.+ .+++|+....+.+++.++++.|.||..-+.   .+|+.       ..++||.||+|+|..+.+
T Consensus       139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~~  204 (562)
T COG1053         139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGRL  204 (562)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceEE
Confidence            467899999999 788999999999999875556899877653   24443       468899999999999843

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.96  E-value=0.067  Score=44.48  Aligned_cols=65  Identities=29%  Similarity=0.347  Sum_probs=49.6

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+++.+..+.+...+...+...|.+|+++++|++|..+ +++|. |.+.+               |..+.||.||.|...
T Consensus       201 ~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~-v~~~~---------------g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  201 FGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERE-DGGVT-VTTED---------------GETIEADAVISAVPP  263 (450)
T ss_dssp             SSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEE-SSEEE-EEETT---------------SSEEEESEEEE-S-H
T ss_pred             ccceeecccchhHHHHHHHhhcCceeecCCcceecccc-ccccc-ccccc---------------ceEEecceeeecCch
Confidence            44677777777778888888889999999999999997 56654 56654               358999999999885


Q ss_pred             Cc
Q psy9486         139 HG  140 (165)
Q Consensus       139 ~s  140 (165)
                      ..
T Consensus       264 ~~  265 (450)
T PF01593_consen  264 SV  265 (450)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02487 zeta-carotene desaturase

Probab=94.94  E-value=0.11  Score=47.60  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcC--CC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHG--DG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~--~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      |..-+.+..++.|++|+++++|.+|..+.  ++  +|+||++.+     +++       +..+.||.||.|.+.+.
T Consensus       297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~~-------~~~~~aD~VV~A~p~~~  360 (569)
T PLN02487        297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----ATE-------KEIVKADAYVAACDVPG  360 (569)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CCC-------ceEEECCEEEECCCHHH
Confidence            45566788889999999999999999863  23  488998831     111       24689999999999874

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.93  E-value=0.21  Score=43.02  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+..++.+..++.||++++++.++++..  ++. +.|.+.+               |..+.|+.||.|.|.....  .+.
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~---------------g~~i~aD~Vv~a~G~~pn~--~l~  246 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQS---------------GETLQADVVIYGIGISAND--QLA  246 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECC---------------CCEEECCEEEECCCCChhh--HHH
Confidence            3456678888899999999999999854  233 3455554               3579999999999987753  455


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       247 ~~~gl~  252 (396)
T PRK09754        247 REANLD  252 (396)
T ss_pred             HhcCCC
Confidence            566764

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=94.84  E-value=0.094  Score=44.48  Aligned_cols=56  Identities=14%  Similarity=0.162  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.+.|++.+++.|++|+++++|++|..+ +++|..+.+.+               |..+.||.||.|.-...
T Consensus       199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~---------------g~~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       199 FPEPARRWLDSRGGEVRLGTRVRSIEAN-AGGIRALVLSG---------------GETLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHHHHHHHcCCEEEcCCeeeEEEEc-CCcceEEEecC---------------CccccCCEEEEcCCHHH
Confidence            3444777788889999999999999986 45444332222               24689999999876543

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.80  E-value=0.17  Score=44.96  Aligned_cols=70  Identities=26%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCc--CeEEEcCEEEEcccCCcc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFAR--GMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~--g~~i~Ak~VI~A~G~~s~  141 (165)
                      ...+++++.||++++++.+.++..+++|+|++|++..+  | .|.+|...+.+.+  ...+.+|.||+|.|....
T Consensus       325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  399 (467)
T TIGR01318       325 REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH  399 (467)
T ss_pred             HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence            35567888999999999999997755678888865321  1 1233432111111  246999999999997764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=94.61  E-value=0.082  Score=48.17  Aligned_cols=62  Identities=11%  Similarity=0.202  Sum_probs=43.6

Q ss_pred             HCC-CEEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCC
Q psy9486          79 AMG-VEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNL  152 (165)
Q Consensus        79 ~~G-v~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl  152 (165)
                      +.| ++|++++.|.+|.++++  ++|.||...+.   .+|+.       .+++||.||+|.|+--  +-+|+-..+.
T Consensus       225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~---~~g~~-------~~v~A~~vVLAagaIe--tpRLLL~S~~  289 (544)
T TIGR02462       225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDL---LSGDR-------FEIKADVYVLACGAVH--NPQILVNSGF  289 (544)
T ss_pred             cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEEC---CCCcE-------EEEECCEEEEccCchh--hHHHHHhCCC
Confidence            344 99999999999999754  47999877652   13432       4799999999999554  3344433333

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.42  E-value=0.043  Score=46.96  Aligned_cols=71  Identities=20%  Similarity=0.297  Sum_probs=48.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+..+|.+|.++|.-.|++..-++.++.+|++|..+.++  ...-|.+.+    .+|.       +..+.|+.||+|+|.
T Consensus        89 ~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~~g~-------~~~~~ar~vVla~G~  157 (341)
T PF13434_consen   89 YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----SDGD-------GETYRARNVVLATGG  157 (341)
T ss_dssp             -SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----TTS--------EEEEEESEEEE----
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----cCCC-------eeEEEeCeEEECcCC
Confidence            355899999999999999998779999999999886433  355677743    2332       358999999999996


Q ss_pred             Cccc
Q psy9486         139 HGHL  142 (165)
Q Consensus       139 ~s~l  142 (165)
                      ...+
T Consensus       158 ~P~i  161 (341)
T PF13434_consen  158 QPRI  161 (341)
T ss_dssp             EE--
T ss_pred             CCCC
Confidence            6544

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.23  E-value=0.27  Score=44.11  Aligned_cols=59  Identities=20%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...++.++|.+.+++.|++++.+++|.++..+ ++. ..|.+.+               |..+.++.+|+|+|+..
T Consensus       265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~-~~~-~~v~~~~---------------g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETE-DGL-IVVTLES---------------GEVLKAKSVIVATGARW  323 (515)
T ss_pred             CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEec-CCe-EEEEECC---------------CCEEEeCEEEECCCCCc
Confidence            45678888899999999999999999999764 332 3455543               34799999999999874

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=94.13  E-value=0.18  Score=43.34  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=42.9

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..+.|.|..|.+.|.+++.+ +  ++.+++|.++  +. +   +|.+.+               |.++.|+.||+|+|.+
T Consensus        82 ~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~-~---~v~l~d---------------g~~~~A~~VI~A~G~~  137 (370)
T TIGR01789        82 AYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DA-D---GVDLAP---------------GTRINARSVIDCRGFK  137 (370)
T ss_pred             CceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eC-C---EEEECC---------------CCEEEeeEEEECCCCC
Confidence            34789999999999765543 3  7778899988  32 3   244443               4589999999999988


Q ss_pred             cc
Q psy9486         140 GH  141 (165)
Q Consensus       140 s~  141 (165)
                      +.
T Consensus       138 s~  139 (370)
T TIGR01789       138 PS  139 (370)
T ss_pred             CC
Confidence            63

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.08  E-value=0.26  Score=43.12  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...|.+..++.|+++++++.|+++..+ ++.+ .+.+.+               |.++.++.||+|.|.....
T Consensus       217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        217 EISDALSYHLRDSGVTIRHNEEVEKVEGG-DDGV-IVHLKS---------------GKKIKADCLLYANGRTGNT  274 (461)
T ss_pred             HHHHHHHHHHHHcCCEEEECCEEEEEEEe-CCeE-EEEECC---------------CCEEEeCEEEEeecCCccc
Confidence            34456778888899999999999999764 3332 244432               3479999999999998765

>KOG1336|consensus

Probab=93.92  E-value=0.19  Score=45.02  Aligned_cols=58  Identities=24%  Similarity=0.355  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      -+.+.+.-++.||+++.++.+.++..+.+|+|+-|.+.+               |.++.|+.||...|+....
T Consensus       258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d---------------g~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD---------------GKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc---------------CCEeccCeEEEeecccccc
Confidence            344555667889999999999999887789999999987               5689999999999987644

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=93.70  E-value=0.46  Score=41.94  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+..++.|+++++++.|+++..++++++..+.+.+      |+.       .++.+|.||+|.|.....
T Consensus       222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~~-------~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GEE-------KTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cce-------EEEEeCEEEEeeCCccCC
Confidence            34556677778899999999999999752134444444432      211       369999999999998765

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.61  E-value=0.48  Score=41.06  Aligned_cols=65  Identities=14%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+...+.+..++.||++++++.|.++.-  ++.+  +.+.+               |.++.+|.||.|+|.....  .+.
T Consensus       180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~---------------g~~i~~D~vi~a~G~~p~~--~~l  238 (427)
T TIGR03385       180 EMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTS---------------GGVYQADMVILATGIKPNS--ELA  238 (427)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcC---------------CCEEEeCEEEECCCccCCH--HHH
Confidence            4556677788889999999999999854  3443  34433               3579999999999988643  345


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       239 ~~~gl~  244 (427)
T TIGR03385       239 KDSGLK  244 (427)
T ss_pred             HhcCcc
Confidence            556654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06370 mercuric reductase; Validated

Probab=93.40  E-value=0.49  Score=41.61  Aligned_cols=61  Identities=20%  Similarity=0.224  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+..++.||++++++.|.++..++++.  .|.+..    .++        +.++.+|.||+|.|.....
T Consensus       213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~--~v~~~~----~~~--------~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        213 DVAAAVREILEREGIDVRLNAECIRVERDGDGI--AVGLDC----NGG--------APEITGSHILVAVGRVPNT  273 (463)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE--EEEEEe----CCC--------ceEEEeCEEEECcCCCcCC
Confidence            355677788888999999999999997643232  233321    011        2479999999999988765

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=93.40  E-value=0.45  Score=42.56  Aligned_cols=59  Identities=25%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+..++.|+++++++.++++..++++ ...|.+.+               +.++.++.||.|+|.....
T Consensus       232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~---------------g~~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       232 TLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFES---------------GKTLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcC---------------CCEEEcCEEEEeeCCCcCc
Confidence            34456667778899999999999999764333 34455543               3479999999999988765

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02785 Protein HOTHEAD

Probab=93.25  E-value=0.27  Score=45.17  Aligned_cols=64  Identities=11%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEE----EcCEEEEcccC
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMEL----HAKVTIFAEGC  138 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i----~Ak~VI~A~G~  138 (165)
                      |..... |...+...+++|++++.|++|+++++   ++++||+..+    .+|...      ..+    .++-||+|+|+
T Consensus       220 R~saa~-l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~----~~g~~~------~~~~~~~~~~eVILsAGa  288 (587)
T PLN02785        220 RHTAAE-LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD----ENGNQH------QAFLSNNKGSEIILSAGA  288 (587)
T ss_pred             EcCHHH-HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE----CCCceE------EEEeecccCceEEecccc
Confidence            444444 34566668899999999999999743   3899999865    344321      112    24889999997


Q ss_pred             Cc
Q psy9486         139 HG  140 (165)
Q Consensus       139 ~s  140 (165)
                      -.
T Consensus       289 i~  290 (587)
T PLN02785        289 IG  290 (587)
T ss_pred             cC
Confidence            55

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.17  E-value=0.44  Score=43.19  Aligned_cols=59  Identities=19%  Similarity=0.289  Sum_probs=44.5

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ++...+.+++.+.+++.|++++ .+.|..+..+  +.+..|.+.+                .++.++.+|+|+|++..
T Consensus        57 ~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~--~~~~~V~~~~----------------g~~~a~~lVlATGa~p~  115 (555)
T TIGR03143        57 TTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD--GDIKTIKTAR----------------GDYKTLAVLIATGASPR  115 (555)
T ss_pred             CCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec--CCEEEEEecC----------------CEEEEeEEEECCCCccC
Confidence            3456788899999999999986 5678888764  3444566643                26899999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK14694 putative mercuric reductase; Provisional

Probab=93.02  E-value=0.57  Score=41.35  Aligned_cols=58  Identities=22%  Similarity=0.180  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      .+...+.+..++.||++++++.|.++..+ ++. +.+.+.+                .++.++.||+|.|......
T Consensus       219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~----------------~~i~~D~vi~a~G~~pn~~  276 (468)
T PRK14694        219 AVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA----------------GTLRAEQLLVATGRTPNTE  276 (468)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC----------------CEEEeCEEEEccCCCCCcC
Confidence            56677888888899999999999999764 332 2344432                3699999999999988663

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=92.87  E-value=0.45  Score=40.26  Aligned_cols=58  Identities=29%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ++-..+.+-+.++|+..|+++.. ..|..+...  +...-|+|.+               + +++||.||+|+|+..
T Consensus        58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~--~~~F~v~t~~---------------~-~~~ak~vIiAtG~~~  115 (305)
T COG0492          58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELE--GGPFKVKTDK---------------G-TYEAKAVIIATGAGA  115 (305)
T ss_pred             CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeec--CceEEEEECC---------------C-eEEEeEEEECcCCcc
Confidence            56677888889999999999988 677777553  2155677775               3 599999999999886

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=92.79  E-value=0.76  Score=34.53  Aligned_cols=61  Identities=16%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             cEEEEhHHHHHHHHHHHHH------CCCEEe-cCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEE
Q psy9486          61 NYVVRLGHVVKWLGEQAEA------MGVEIY-PGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTI  133 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~------~Gv~i~-~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI  133 (165)
                      .--.+|..|.++|.+..++      .|++|. ...+|++|...+++  .-|.+.+               |..+.|+.||
T Consensus        88 ~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~---------------g~~~~~d~Vv  150 (156)
T PF13454_consen   88 DDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTAD---------------GQSIRADAVV  150 (156)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECC---------------CCEEEeCEEE
Confidence            3457788777776655544      354443 34588888876444  2455554               4689999999


Q ss_pred             EcccC
Q psy9486         134 FAEGC  138 (165)
Q Consensus       134 ~A~G~  138 (165)
                      +|+|.
T Consensus       151 La~Gh  155 (156)
T PF13454_consen  151 LATGH  155 (156)
T ss_pred             ECCCC
Confidence            99995

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=92.77  E-value=0.63  Score=41.14  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      .+...+.+..++.||++++++.+.++..+ ++.+. |.+.+               |.++.++.||+|.|......
T Consensus       219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~---------------g~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTD---------------GRTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECC---------------CcEEEecEEEEeecCCcCCC
Confidence            34456667777899999999999999764 34332 44433               35799999999999987653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.76  E-value=0.39  Score=31.87  Aligned_cols=39  Identities=31%  Similarity=0.422  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD  108 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~  108 (165)
                      .+-.++.+..++.||++++++.++++..++++ +. |++.+
T Consensus        41 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~   79 (80)
T PF00070_consen   41 DAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED   79 (80)
T ss_dssp             HHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence            34556778888899999999999999987556 66 87764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=92.72  E-value=0.53  Score=44.23  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=46.4

Q ss_pred             HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCcC--eEEEcCEEEEcccCCccc
Q psy9486          75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFARG--MELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+++.||+|++.+.+.+++.+++|+|++|++..+  + -|.+|+..+-..+|  .++.||.||.|.|.....
T Consensus       616 ~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~  688 (752)
T PRK12778        616 KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP  688 (752)
T ss_pred             HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc
Confidence            56788999999999999998765788999876422  1 11234321111112  359999999999987653

>KOG2614|consensus

Probab=92.65  E-value=0.11  Score=45.78  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             CeEEEcCEEEEcccCCcccchHHHhh
Q psy9486         124 GMELHAKVTIFAEGCHGHLTKSLSSR  149 (165)
Q Consensus       124 g~~i~Ak~VI~A~G~~s~l~~~l~~~  149 (165)
                      |.++++|++|.|+|++|.+++.|..+
T Consensus       147 g~~~~~dlligCDGa~S~Vr~~l~~~  172 (420)
T KOG2614|consen  147 GTTVKGDLLIGCDGAYSKVRKWLGFK  172 (420)
T ss_pred             CcEEEeeEEEEcCchHHHHHHHhccc
Confidence            57899999999999999998885444

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=92.64  E-value=0.49  Score=41.47  Aligned_cols=58  Identities=24%  Similarity=0.379  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...+.+..++.||++++++.|+++..++++  ..|.+.+               |.++.++.||+|.|.....
T Consensus       208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~---------------g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       208 DMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSH---------------GEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcC---------------CcEeecCEEEEeeCCCcCC
Confidence            34445667778899999999999999764333  2344433               3579999999999988755

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG1346|consensus

Probab=92.64  E-value=0.18  Score=45.12  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS  145 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~  145 (165)
                      -..+-+|-.++.++-||.++.+..|..+... .+.++ ++..+               |++++.|+||+|.|.....  .
T Consensus       392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~-~~nl~-lkL~d---------------G~~l~tD~vVvavG~ePN~--e  452 (659)
T KOG1346|consen  392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKC-CKNLV-LKLSD---------------GSELRTDLVVVAVGEEPNS--E  452 (659)
T ss_pred             HHHHHHHHHHHHHhcCceeccchhhhhhhhh-ccceE-EEecC---------------CCeeeeeeEEEEecCCCch--h
Confidence            3456788899999999999999999999875 34433 67766               6899999999999986543  4


Q ss_pred             HHhhcCCC
Q psy9486         146 LSSRFNLR  153 (165)
Q Consensus       146 l~~~~gl~  153 (165)
                      |.+.-||.
T Consensus       453 la~~sgLe  460 (659)
T KOG1346|consen  453 LAEASGLE  460 (659)
T ss_pred             hcccccce
Confidence            44445553

>PRK13748 putative mercuric reductase; Provisional

Probab=92.59  E-value=0.58  Score=42.05  Aligned_cols=56  Identities=27%  Similarity=0.283  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +-..+.+..++.|++|++++.|+++..+ ++.+ .+.+.+                .++.++.||+|.|.....
T Consensus       312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~----------------~~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        312 IGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGH----------------GELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecC----------------CeEEeCEEEEccCCCcCC
Confidence            4456667778899999999999999764 3432 244432                369999999999998765

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=92.57  E-value=0.57  Score=40.84  Aligned_cols=62  Identities=18%  Similarity=0.309  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+.+.+.+..++.||++++++.|.++.-   +   +|.+.+               |.++.|+.||.|.|....   .+.
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~---~v~~~~---------------g~~i~~d~vi~~~G~~~~---~~~  284 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD---K---EVVLKD---------------GEVIPTGLVVWSTGVGPG---PLT  284 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeC---C---EEEECC---------------CCEEEccEEEEccCCCCc---chh
Confidence            3556667778889999999999998842   2   355554               458999999999997653   244


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..++.
T Consensus       285 ~~~~l~  290 (424)
T PTZ00318        285 KQLKVD  290 (424)
T ss_pred             hhcCCc
Confidence            445553

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.54  E-value=0.71  Score=40.27  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...|.+..++.||+++++++|.++..+ ++.+ .|.+.+                .++.++.||+|.|.....
T Consensus       200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~----------------g~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        200 DIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEH----------------AQLAVDALLIASGRQPAT  256 (441)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcC----------------CeEEeCEEEEeecCCcCC
Confidence            45566777888999999999999999764 3432 244332                268999999999998865

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=92.44  E-value=0.89  Score=38.35  Aligned_cols=52  Identities=25%  Similarity=0.417  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+..++.+..++.||++++++.++++.   ++   +|.+.+               |.++.++.||+|.|...
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~---------------g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILAD---------------GRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCC---------------CCEEecCEEEEccCCCh
Confidence            345677778889999999999999873   23   455543               35899999999999776

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=92.41  E-value=0.66  Score=41.27  Aligned_cols=60  Identities=22%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             cEEEEh---HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486          61 NYVVRL---GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE  136 (165)
Q Consensus        61 ~~~i~r---~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~  136 (165)
                      .|+..+   +++-+.+.+.+.=.|..+..+..+.+|.++++|+++||...                |+.++|+.||...
T Consensus       223 PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~dp  285 (438)
T PF00996_consen  223 PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGDP  285 (438)
T ss_dssp             SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEEG
T ss_pred             CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEECC
Confidence            455554   48888888888889999999999999999778999999874                4789999999543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.26  E-value=0.84  Score=40.00  Aligned_cols=61  Identities=23%  Similarity=0.288  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...+.+..++.|+++++++.|.++..+ ++.+ .+.+.+     +|+.       .++.+|.||+|.|.....
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~-----gg~~-------~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        214 EISKLAERALKKRGIKIKTGAKAKKVEQT-DDGV-TVTLED-----GGKE-------ETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEEe-----CCee-------EEEEeCEEEEeeCCccCC
Confidence            55667778888999999999999999764 3332 344433     1111       469999999999988765

>PRK14727 putative mercuric reductase; Provisional

Probab=92.24  E-value=0.74  Score=40.84  Aligned_cols=57  Identities=26%  Similarity=0.277  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      +..++.+..++.||++++++.|+.+..+ ++.+ -|.+.+                .++.|+.||+|.|......
T Consensus       230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~----------------g~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        230 LGETLTACFEKEGIEVLNNTQASLVEHD-DNGF-VLTTGH----------------GELRAEKLLISTGRHANTH  286 (479)
T ss_pred             HHHHHHHHHHhCCCEEEcCcEEEEEEEe-CCEE-EEEEcC----------------CeEEeCEEEEccCCCCCcc
Confidence            4456677778899999999999999764 3322 233332                3699999999999998653

>PLN02507 glutathione reductase

Probab=92.21  E-value=0.75  Score=41.19  Aligned_cols=58  Identities=21%  Similarity=0.366  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+-.++.+..++.||++++++.|+++..+ ++.+ .|.+.+               |.++.++.||+|.|.....
T Consensus       245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~---------------g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        245 EMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDH---------------GEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECC---------------CcEEEcCEEEEeecCCCCC
Confidence            34455666777899999999999999764 3332 344433               3579999999999988765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=92.06  E-value=0.72  Score=41.05  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             EEhHHHHHHHHHHHHHCCCE--EecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~--i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .++.++-++|.+.|+..|++  |.++++|++|..+ +++ +-|.+.+    .++..       .+..+|.||+|+|..+
T Consensus       108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~----~~~~~-------~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKN----SGGFS-------KDEIFDAVVVCNGHYT  173 (461)
T ss_pred             CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEc----CCCce-------EEEEcCEEEEeccCCC
Confidence            35678889999999999998  8999999999875 343 3455543    11111       2467899999999754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=91.97  E-value=0.98  Score=39.36  Aligned_cols=57  Identities=16%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...+.+..++.|+++++++.|+++..+ ++.++ +...                +.++.+|.||+|+|.....
T Consensus       199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v~-v~~~----------------g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQVL-VVTE----------------DETYRFDALLYATGRKPNT  255 (438)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEEE-EEEC----------------CeEEEcCEEEEeeCCCCCc
Confidence            45556666778899999999999999764 33332 3222                2479999999999998765

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=91.89  E-value=0.85  Score=36.76  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ...+.+.+++. |+++++++.++++..+  +++.++...+.   .+|+       +.++.+|.||.|+|.....
T Consensus       179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~~~~  240 (300)
T TIGR01292       179 EKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT---VTGE-------EEELKVDGVFIAIGHEPNT  240 (300)
T ss_pred             CHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEec---CCCc-------eEEEEccEEEEeeCCCCCh
Confidence            45566777787 9999999999999753  46667765421   1222       2579999999999977654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02053 MerA mercuric reductase

Probab=91.86  E-value=1  Score=39.51  Aligned_cols=60  Identities=20%  Similarity=0.209  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +-..+.+..++.||+++++++|+++..+ ++ ...|.+..     ++.       +.++.++.||+|.|.....
T Consensus       209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~-~~~v~~~~-----~~~-------~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       209 ISAAVEEALAEEGIEVVTSAQVKAVSVR-GG-GKIITVEK-----PGG-------QGEVEADELLVATGRRPNT  268 (463)
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC-EEEEEEEe-----CCC-------ceEEEeCEEEEeECCCcCC
Confidence            4456667778899999999999999764 33 23344432     111       2479999999999988765

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG0404|consensus

Probab=91.83  E-value=0.33  Score=40.16  Aligned_cols=59  Identities=20%  Similarity=0.201  Sum_probs=46.7

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.-..+...|.+++++-|.+|++. +|.++..+  ++..-+.+..                ..++|+.||+|+|+..
T Consensus        66 gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s--skpF~l~td~----------------~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   66 GITGPELMDKMRKQSERFGTEIITE-TVSKVDLS--SKPFKLWTDA----------------RPVTADAVILATGASA  124 (322)
T ss_pred             ccccHHHHHHHHHHHHhhcceeeee-ehhhcccc--CCCeEEEecC----------------CceeeeeEEEecccce
Confidence            4566788889999999999999976 58888764  4555566653                4799999999999874

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=91.74  E-value=1.1  Score=39.56  Aligned_cols=59  Identities=19%  Similarity=0.115  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +-..+.+..++.|+++++++.|+++..++++. ..|.+.+      |        ...+.++.||.|.|.....
T Consensus       209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~------g--------~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFED------G--------KSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECC------C--------cEEEEcCEEEEeeCCCcCc
Confidence            34556666778899999999999997642332 3345433      1        1369999999999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK13984 putative oxidoreductase; Provisional

Probab=91.72  E-value=0.77  Score=41.90  Aligned_cols=68  Identities=25%  Similarity=0.334  Sum_probs=45.6

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--cccCCCCCCCCCCc--CeEEEcCEEEEcccCCccc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--GIAKDGSPKDTFAR--GMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g~~~~g~~~~~~~~--g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..++.+.||+|++++.+.++..+ +++|.+|++.+.  -.+.+|+....+.+  ..++.||.||+|.|.....
T Consensus       469 ~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~  540 (604)
T PRK13984        469 IEEGLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDY  540 (604)
T ss_pred             HHHHHHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCCh
Confidence            34566789999999999998664 788988876431  01233432221112  2469999999999988643

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.49  E-value=0.68  Score=45.17  Aligned_cols=71  Identities=14%  Similarity=0.070  Sum_probs=50.7

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc--------ccCC-C------CCCCCCCcCeEEEcCEEEEcc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG--------IAKD-G------SPKDTFARGMELHAKVTIFAE  136 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g--------~~~~-g------~~~~~~~~g~~i~Ak~VI~A~  136 (165)
                      +=.+.|.+.||+|.+.+.-.+++.+++|+|.||++..+-        .-.+ +      .+.+-..+...|.||.||+|.
T Consensus       645 eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~  724 (1028)
T PRK06567        645 EELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAI  724 (1028)
T ss_pred             HHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEec
Confidence            446678999999999999999988777999999887532        1111 1      122223344679999999999


Q ss_pred             cCCccc
Q psy9486         137 GCHGHL  142 (165)
Q Consensus       137 G~~s~l  142 (165)
                      |..-..
T Consensus       725 G~~~~~  730 (1028)
T PRK06567        725 GIENNT  730 (1028)
T ss_pred             ccCCcc
Confidence            965543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=91.36  E-value=0.98  Score=44.11  Aligned_cols=68  Identities=21%  Similarity=0.356  Sum_probs=47.4

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc---ccCCCCCCCCCCcC--eEEEcCEEEEcccCCccc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g---~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.|++.||+|++.+.+.++..+++|+|.+|++..+-   -|.+|+..+.. +|  .++.+|.||+|.|.....
T Consensus       616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~-~g~~~~i~~D~Vi~AiG~~p~~  688 (1006)
T PRK12775        616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMP-TGEFKDLECDTVIYALGTKANP  688 (1006)
T ss_pred             HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccC-CCceEEEEcCEEEECCCcCCCh
Confidence            3568889999999999999987667899998765321   12334321111 12  369999999999987653

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=91.34  E-value=0.65  Score=40.93  Aligned_cols=54  Identities=30%  Similarity=0.518  Sum_probs=40.3

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCe-EEEcCEEEEcccCCcccchHHHhh
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHLTKSLSSR  149 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~-~i~Ak~VI~A~G~~s~l~~~l~~~  149 (165)
                      ...+..+++||+|.+++.|+++.-   +   +|.+.+               |. +|.|+.||-|+|..+   ..+.+.
T Consensus       214 ~a~~~L~~~GV~v~l~~~Vt~v~~---~---~v~~~~---------------g~~~I~~~tvvWaaGv~a---~~~~~~  268 (405)
T COG1252         214 YAERALEKLGVEVLLGTPVTEVTP---D---GVTLKD---------------GEEEIPADTVVWAAGVRA---SPLLKD  268 (405)
T ss_pred             HHHHHHHHCCCEEEcCCceEEECC---C---cEEEcc---------------CCeeEecCEEEEcCCCcC---Chhhhh
Confidence            334445679999999999999943   2   566664               23 599999999999987   455555

>KOG2311|consensus

Probab=91.31  E-value=0.39  Score=43.55  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             EhHHHHHHHHHHHHHC------CCEEecCCceeEEEEcCCC----cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486          65 RLGHVVKWLGEQAEAM------GVEIYPGIPASEVLYHGDG----SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF  134 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~------Gv~i~~~~~v~~i~~~~~g----~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~  134 (165)
                      .|..+|+-|+++..+.      ..+|+++ .|.+++..+.+    +|.||.+.+               |..|+|+-||+
T Consensus       117 ~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d---------------gt~v~a~~Vil  180 (679)
T KOG2311|consen  117 LRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD---------------GTVVYAESVIL  180 (679)
T ss_pred             hHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec---------------CcEeccceEEE
Confidence            4778888888887653      4566655 67778774322    489999987               68899999999


Q ss_pred             cccC
Q psy9486         135 AEGC  138 (165)
Q Consensus       135 A~G~  138 (165)
                      .+|.
T Consensus       181 TTGT  184 (679)
T KOG2311|consen  181 TTGT  184 (679)
T ss_pred             eecc
Confidence            9993

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.28  E-value=1  Score=40.87  Aligned_cols=68  Identities=25%  Similarity=0.220  Sum_probs=43.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc--c-ccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV--G-IAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~--g-~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+.+.+.|++|++++.+.++.-++++. +||+...+  + .|.+|...+.-....++.+|.||.|.|....
T Consensus       311 ~~~~a~~~GVki~~~~~~~~i~~~~~~~-~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~  381 (564)
T PRK12771        311 EIEEALREGVEINWLRTPVEIEGDENGA-TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDID  381 (564)
T ss_pred             HHHHHHHcCCEEEecCCcEEEEcCCCCE-EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCc
Confidence            4556778899999999999997653444 47654321  1 1234432111001247999999999997763

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=91.08  E-value=1.4  Score=38.91  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...+.+..++.||+|++++.|+++.-+ ++.+ .+.....   .+|+       +.++.++.||+|.|.....
T Consensus       216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~pn~  278 (466)
T PRK06115        216 ETAKTLQKALTKQGMKFKLGSKVTGATAG-ADGV-SLTLEPA---AGGA-------AETLQADYVLVAIGRRPYT  278 (466)
T ss_pred             HHHHHHHHHHHhcCCEEEECcEEEEEEEc-CCeE-EEEEEEc---CCCc-------eeEEEeCEEEEccCCcccc
Confidence            35566777888899999999999999764 2322 2222210   1121       2479999999999988654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=90.88  E-value=1.1  Score=39.44  Aligned_cols=69  Identities=23%  Similarity=0.185  Sum_probs=44.3

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccc---cccCCCCCCCCC-CcCeEEEcCEEEEcccCCcc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV---GIAKDGSPKDTF-ARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~---g~~~~g~~~~~~-~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +..+.+++.||+|++++.+.++.-+ ++.+.+|.....   .-+.+|+..... ..+.++.+|.||.|.|....
T Consensus       316 ~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~  388 (457)
T PRK11749        316 EEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN  388 (457)
T ss_pred             HHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence            4567788999999999999998764 455566655321   011223210000 01347999999999998765

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=90.63  E-value=1.3  Score=39.61  Aligned_cols=71  Identities=21%  Similarity=0.180  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      ++-+.+.+..++.|+++++++.++.+... ++. +.|...+      |.       +..++|+.|++|.|.......--.
T Consensus       215 ei~~~~~~~l~~~gv~i~~~~~v~~~~~~-~~~-v~v~~~~------g~-------~~~~~ad~vLvAiGR~Pn~~~LgL  279 (454)
T COG1249         215 EISKELTKQLEKGGVKILLNTKVTAVEKK-DDG-VLVTLED------GE-------GGTIEADAVLVAIGRKPNTDGLGL  279 (454)
T ss_pred             HHHHHHHHHHHhCCeEEEccceEEEEEec-CCe-EEEEEec------CC-------CCEEEeeEEEEccCCccCCCCCCh
Confidence            34455666666678999999999999775 333 4455543      21       126999999999999887754334


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      ++.|+.
T Consensus       280 e~~Gv~  285 (454)
T COG1249         280 ENAGVE  285 (454)
T ss_pred             hhcCce
Confidence            455554

>PRK09897 hypothetical protein; Provisional

Probab=90.55  E-value=1.3  Score=40.41  Aligned_cols=51  Identities=20%  Similarity=0.235  Sum_probs=36.7

Q ss_pred             HHHHHHHCC--CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          73 LGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        73 L~~~A~~~G--v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      +.+.+.+.|  ++++..++|+++..+ ++.+ .|.+.+      +        +..+.||.||+|+|..
T Consensus       113 l~~~a~~~G~~V~v~~~~~V~~I~~~-~~g~-~V~t~~------g--------g~~i~aD~VVLAtGh~  165 (534)
T PRK09897        113 LVDQARQQKFAVAVYESCQVTDLQIT-NAGV-MLATNQ------D--------LPSETFDLAVIATGHV  165 (534)
T ss_pred             HHHHHHHcCCeEEEEECCEEEEEEEe-CCEE-EEEECC------C--------CeEEEcCEEEECCCCC
Confidence            456667777  788889999999875 3432 355543      1        2479999999999974

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.48  E-value=1.8  Score=38.09  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+-..+.+..++.||+|++++.|+++.-+ ++. +.|.+..    .+|+.       .++.++.||+|.|.....
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~----~~g~~-------~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        214 EVSKEIAKQYKKLGVKILTGTKVESIDDN-GSK-VTVTVSK----KDGKA-------QELEADKVLQAIGFAPRV  275 (466)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCe-EEEEEEe----cCCCe-------EEEEeCEEEECcCcccCC
Confidence            35566777788899999999999999753 333 2344331    12321       379999999999988765

>PTZ00058 glutathione reductase; Provisional

Probab=90.28  E-value=1.9  Score=39.51  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+.+.+..++.||++++++.+.++..++++.+. +...+      +        +.++.++.||+|.|.....
T Consensus       280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~------~--------~~~i~aD~VlvA~Gr~Pn~  338 (561)
T PTZ00058        280 IINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD------G--------RKYEHFDYVIYCVGRSPNT  338 (561)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC------C--------CEEEECCEEEECcCCCCCc
Confidence            4455666777889999999999999754333332 22222      1        2479999999999988765

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=90.05  E-value=0.47  Score=44.75  Aligned_cols=63  Identities=22%  Similarity=0.383  Sum_probs=50.3

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFN  151 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g  151 (165)
                      .|..+.++.|+.++++...++++-  .+++.+|+..+               |..+.|+.||.|+|.+..+  .+.+..|
T Consensus       192 lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D---------------G~~i~ad~VV~a~GIrPn~--ela~~aG  252 (793)
T COG1251         192 LLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD---------------GTEIPADLVVMAVGIRPND--ELAKEAG  252 (793)
T ss_pred             HHHHHHHhhcceeecccchhhhhc--CcceeeEeecC---------------CCcccceeEEEeccccccc--HhHHhcC
Confidence            466667789999999988888876  47888999886               5689999999999998866  4455566


Q ss_pred             CC
Q psy9486         152 LR  153 (165)
Q Consensus       152 l~  153 (165)
                      |.
T Consensus       253 la  254 (793)
T COG1251         253 LA  254 (793)
T ss_pred             cC
Confidence            64

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.84  E-value=0.91  Score=40.16  Aligned_cols=74  Identities=11%  Similarity=0.132  Sum_probs=54.4

Q ss_pred             CCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEE--EEEccccccCCCCCCCCCCcCeEEEcCEEE
Q psy9486          56 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTI  133 (165)
Q Consensus        56 ~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~G--V~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI  133 (165)
                      +-+.+.|.+.|.++++++.-.|..+ -.+.+++.|++|..-+.+.+.-  |++.+               +..++|+-+|
T Consensus        87 Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~---------------~~~y~ar~lV  150 (436)
T COG3486          87 FLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN---------------GTVYRARNLV  150 (436)
T ss_pred             hhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC---------------CcEEEeeeEE
Confidence            3456688999999999988888888 7899999999773211222222  44443               3489999999


Q ss_pred             EcccCCcccchH
Q psy9486         134 FAEGCHGHLTKS  145 (165)
Q Consensus       134 ~A~G~~s~l~~~  145 (165)
                      ++.|....+-..
T Consensus       151 lg~G~~P~IP~~  162 (436)
T COG3486         151 LGVGTQPYIPPC  162 (436)
T ss_pred             EccCCCcCCChH
Confidence            999998877543

>PLN02546 glutathione reductase

Probab=89.81  E-value=2.3  Score=38.85  Aligned_cols=57  Identities=21%  Similarity=0.313  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      -.++.+..++.||++++++.+.++..++++.+ .|.+.+               +....++.||+|.|.....
T Consensus       296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~---------------g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK---------------GTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC---------------eEEEecCEEEEeeccccCC
Confidence            34566777889999999999999976434433 344432               2234489999999998866

>KOG2960|consensus

Probab=89.68  E-value=1.3  Score=36.42  Aligned_cols=85  Identities=16%  Similarity=0.267  Sum_probs=57.4

Q ss_pred             CCCcEEEEh--HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCC--C--cEEEEEEccccccCCCCCCCCCCcCeEEEcC
Q psy9486          58 NHGNYVVRL--GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGD--G--SVKGIATGDVGIAKDGSPKDTFARGMELHAK  130 (165)
Q Consensus        58 ~~~~~~i~r--~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~--g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak  130 (165)
                      ..+.|++-.  .-|......+.-+ -.|.+|.-+.|++++..+.  |  +|.||.|++.=+..+--.+.- ++...|.|.
T Consensus       146 degdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsC-MDPNviea~  224 (328)
T KOG2960|consen  146 DEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSC-MDPNVIEAA  224 (328)
T ss_pred             cCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCcccc-CCCCeeeEE
Confidence            456777643  3466655555544 6999999999999988532  2  789999987544333212222 222479999


Q ss_pred             EEEEcccCCcccc
Q psy9486         131 VTIFAEGCHGHLT  143 (165)
Q Consensus       131 ~VI~A~G~~s~l~  143 (165)
                      +|+-++|..+...
T Consensus       225 ~vvS~tGHDGPFG  237 (328)
T KOG2960|consen  225 VVVSTTGHDGPFG  237 (328)
T ss_pred             EEEEccCCCCCch
Confidence            9999999988764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=89.57  E-value=2.2  Score=37.58  Aligned_cols=59  Identities=20%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ++-+.+.+..++.|+++++++.|+++..+ ++. +-+...       |+       ..++.+|.||+|+|....+
T Consensus       212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~-------g~-------~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYE-------GS-------IQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEEC-------Cc-------eEEEEeCEEEEecCCccCC
Confidence            45556777788899999999999998653 232 222221       11       1369999999999988765

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.53  E-value=0.39  Score=36.51  Aligned_cols=56  Identities=23%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcE----EEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSV----KGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V----~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.+++...+++++.++.|.++... .+++    ..+....     .+       .+.++.+|.+|+|+|..+.
T Consensus        64 ~~~~~~~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~-----~~-------~~~~~~~d~lviAtG~~~~  123 (201)
T PF07992_consen   64 LVDQLKNRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVE-----TG-------DGREIKYDYLVIATGSRPR  123 (201)
T ss_dssp             HHHHHHHHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEE-----TT-------TEEEEEEEEEEEESTEEEE
T ss_pred             cccccccceEEEeecccccccccc-ccccccCcccceeec-----cC-------CceEecCCeeeecCccccc
Confidence            355557789999888999999775 4532    1221111     11       1368999999999997653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=89.23  E-value=2.1  Score=37.42  Aligned_cols=61  Identities=10%  Similarity=0.062  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                      +.+.+.+..++.||+++++++|+++.   ..   .|.+.+               |..+.+|.||.|.|.....  .+.+
T Consensus       191 ~~~~l~~~l~~~gI~i~~~~~v~~i~---~~---~v~~~~---------------g~~~~~D~vl~a~G~~pn~--~~l~  247 (438)
T PRK13512        191 MNQPILDELDKREIPYRLNEEIDAIN---GN---EVTFKS---------------GKVEHYDMIIEGVGTHPNS--KFIE  247 (438)
T ss_pred             HHHHHHHHHHhcCCEEEECCeEEEEe---CC---EEEECC---------------CCEEEeCEEEECcCCCcCh--HHHH
Confidence            44566777788999999999999983   22   344443               3478999999999988754  2345


Q ss_pred             hcCC
Q psy9486         149 RFNL  152 (165)
Q Consensus       149 ~~gl  152 (165)
                      ..|+
T Consensus       248 ~~gl  251 (438)
T PRK13512        248 SSNI  251 (438)
T ss_pred             hcCc
Confidence            4555

>PRK10262 thioredoxin reductase; Provisional

Probab=89.18  E-value=1.5  Score=36.46  Aligned_cols=64  Identities=17%  Similarity=0.136  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+.+.+..++.||++++++.++++.-+ ++.+.+|++.+.   .++..      ..++.++.||.|.|.....
T Consensus       187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~---~~~~~------~~~i~~D~vv~a~G~~p~~  250 (321)
T PRK10262        187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDT---QNSDN------IESLDVAGLFVAIGHSPNT  250 (321)
T ss_pred             HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEc---CCCCe------EEEEECCEEEEEeCCccCh
Confidence            3445556666789999999999999653 446777776531   01111      2479999999999987654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=89.12  E-value=2.6  Score=37.31  Aligned_cols=62  Identities=23%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+...+.+..++.|+++++++.|+++..+ ++.+ .|...+    .+|+.       .++.++.||+|.|.....
T Consensus       225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~----~~g~~-------~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTD----ADGEA-------QTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             HHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEe----CCCce-------eEEEcCEEEEccCCccCC
Confidence            45556677778899999999999999764 3333 344432    12321       369999999999988765

>KOG2853|consensus

Probab=88.77  E-value=1.9  Score=37.79  Aligned_cols=72  Identities=14%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEc---------CCC-------cEEEEEEccccccCCCCCCCCCCcCeEEEcC
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYH---------GDG-------SVKGIATGDVGIAKDGSPKDTFARGMELHAK  130 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~---------~~g-------~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak  130 (165)
                      ..+-.-+.++|..+||.+..+ .|++..++         +++       ++.||.+. +   .|+..       ..+++.
T Consensus       243 w~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~-m---~d~~~-------r~vk~a  310 (509)
T KOG2853|consen  243 WALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVR-M---NDALA-------RPVKFA  310 (509)
T ss_pred             HHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEe-c---Cchhc-------CceeEE
Confidence            344445788999999999755 67777775         234       44444333 1   12322       369999


Q ss_pred             EEEEcccCCcccchHHHhhcCCC
Q psy9486         131 VTIFAEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus       131 ~VI~A~G~~s~l~~~l~~~~gl~  153 (165)
                      .+|.|+|+||   .|+.+..|+-
T Consensus       311 l~V~aAGa~s---~QvArlAgIG  330 (509)
T KOG2853|consen  311 LCVNAAGAWS---GQVARLAGIG  330 (509)
T ss_pred             EEEeccCccH---HHHHHHhccC
Confidence            9999999998   6777666664

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=88.65  E-value=2  Score=38.59  Aligned_cols=62  Identities=19%  Similarity=0.227  Sum_probs=44.3

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +..+.+..++ .||+|++++.++++.-+ ++++.+|.+.+.   .+|+       +..+.+|.||+|.|.....
T Consensus       390 ~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~~-------~~~i~~D~vi~a~G~~Pn~  452 (515)
T TIGR03140       390 DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR---NSGE-------EKQLDLDGVFVQIGLVPNT  452 (515)
T ss_pred             hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC---CCCc-------EEEEEcCEEEEEeCCcCCc
Confidence            3455666666 59999999999999653 477878876531   1121       2469999999999987644

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=88.63  E-value=1.8  Score=38.36  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCcEEEEEEcccccc
Q psy9486          35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIA  112 (165)
Q Consensus        35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~  112 (165)
                      .++++-++...+.+|+.|-........+.-.+    .++...+++.|.  +|...+.|+.+.+++++...-|.+.+    
T Consensus        54 ~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~----~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~----  125 (443)
T COG2072          54 PGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK----DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD----  125 (443)
T ss_pred             CceEECCchheeccCCCccCCcccCCCcccHH----HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC----
Confidence            34444455455666665421001122222223    344555555553  34445566667777667677787775    


Q ss_pred             CCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486         113 KDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus       113 ~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                        |..       .++.|+.||+|+|..+
T Consensus       126 --~~~-------~~~~a~~vV~ATG~~~  144 (443)
T COG2072         126 --GGT-------GELTADFVVVATGHLS  144 (443)
T ss_pred             --CCe-------eeEecCEEEEeecCCC
Confidence              211       1277999999999855

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=88.58  E-value=1.1  Score=38.95  Aligned_cols=66  Identities=24%  Similarity=0.333  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+-..|..+-+++|.-++++-+|.+.... +++|..|-|.+      ..       ...++|+..|+|+|  |.+.+-|.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn------~~-------diP~~a~~~VLAsG--sffskGLv  322 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRN------HA-------DIPLRADFYVLASG--SFFSKGLV  322 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecc------cc-------cCCCChhHeeeecc--ccccccch
Confidence            34567788889999999999999999986 79999998875      11       24699999999999  66655544


Q ss_pred             hh
Q psy9486         148 SR  149 (165)
Q Consensus       148 ~~  149 (165)
                      ..
T Consensus       323 ae  324 (421)
T COG3075         323 AE  324 (421)
T ss_pred             hh
Confidence            43

>PTZ00052 thioredoxin reductase; Provisional

Probab=88.40  E-value=3  Score=37.30  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      -+.+.+..++.||++++++.+.++... ++. ..|...+               |.++.++.||+|.|.....
T Consensus       225 ~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~-~~v~~~~---------------g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        225 SEKVVEYMKEQGTLFLEGVVPINIEKM-DDK-IKVLFSD---------------GTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             HHHHHHHHHHcCCEEEcCCeEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEEeeCCCCCc
Confidence            456677778899999999999988754 333 2355443               3468999999999998865

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=88.00  E-value=1.7  Score=37.96  Aligned_cols=51  Identities=14%  Similarity=0.172  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .+.+.|++.+.+  ++|.++++|+.|..+ ++++ .|.+.+               |..+.||.||+|.-
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFAN---------------HESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECC---------------CCEEEeCEEEECCC
Confidence            455555555543  689999999999886 3443 466554               34789999999884

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=87.59  E-value=2.1  Score=36.53  Aligned_cols=47  Identities=17%  Similarity=0.321  Sum_probs=35.0

Q ss_pred             HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.+++.|++++.+++|+++..+  .+.  |.+.                +.++.+|.+|+|+|+...
T Consensus        66 ~~~~~~gv~~~~~~~V~~id~~--~~~--v~~~----------------~~~~~yd~LVlATG~~~~  112 (377)
T PRK04965         66 EFAEQFNLRLFPHTWVTDIDAE--AQV--VKSQ----------------GNQWQYDKLVLATGASAF  112 (377)
T ss_pred             HHHHhCCCEEECCCEEEEEECC--CCE--EEEC----------------CeEEeCCEEEECCCCCCC
Confidence            4466789999999999998664  332  2333                247999999999998753

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=87.35  E-value=2.8  Score=37.39  Aligned_cols=61  Identities=21%  Similarity=0.207  Sum_probs=38.4

Q ss_pred             HCCCEE-ecCCceeEEEEcCCCcEEEEEEccc--cccCCCCCCCCCCcC--eEEEcCEEEEcccCC
Q psy9486          79 AMGVEI-YPGIPASEVLYHGDGSVKGIATGDV--GIAKDGSPKDTFARG--MELHAKVTIFAEGCH  139 (165)
Q Consensus        79 ~~Gv~i-~~~~~v~~i~~~~~g~V~GV~~~~~--g~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~  139 (165)
                      ..|+++ ++.+.+.+++-+++++|.+|++..+  .-+.+|+..+.+.+|  .++.+|.||.|.|..
T Consensus       348 ~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~  413 (485)
T TIGR01317       348 HYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV  413 (485)
T ss_pred             hcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence            357654 4678888887654578999875422  112455422222222  369999999999964

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG1335|consensus

Probab=87.28  E-value=4.2  Score=36.17  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=44.4

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      +.+-..+.|..+.++|+|.....+.||.| -|...+.   ++|+.       .++.||++++|.|.+....
T Consensus       258 ~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~a---k~~k~-------~tle~DvlLVsiGRrP~t~  317 (506)
T KOG1335|consen  258 FQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENA---KTGKK-------ETLECDVLLVSIGRRPFTE  317 (506)
T ss_pred             HHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEec---CCCce-------eEEEeeEEEEEccCccccc
Confidence            33444568999999999999998767644 4555542   44543       5899999999999887664

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=86.79  E-value=3.6  Score=40.09  Aligned_cols=70  Identities=21%  Similarity=0.248  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                      +...+.++.++.||++++++.+.++.-  ++++.+|+....    +|+       +..+.||.|++|.|.....  +|.+
T Consensus       353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~----~g~-------~~~i~~D~V~va~G~~Pnt--~L~~  417 (985)
T TIGR01372       353 VSPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARN----GGA-------GQRLEADALAVSGGWTPVV--HLFS  417 (985)
T ss_pred             hhHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEec----CCc-------eEEEECCEEEEcCCcCchh--HHHH
Confidence            445667778889999999999999854  466777776521    121       3579999999999988754  4555


Q ss_pred             hcCCC
Q psy9486         149 RFNLR  153 (165)
Q Consensus       149 ~~gl~  153 (165)
                      ..|..
T Consensus       418 ~lg~~  422 (985)
T TIGR01372       418 QRGGK  422 (985)
T ss_pred             hcCCC
Confidence            56654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=86.64  E-value=4.8  Score=34.60  Aligned_cols=57  Identities=19%  Similarity=0.228  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHHHCCC-EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          66 LGHVVKWLGEQAEAMGV-EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv-~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      +.-+..++..-++.++. +|+++++|++|..+ ++. +.|.+.+               |.++.||.||.|.-..
T Consensus       217 ~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~-~~~-~~v~~~~---------------g~~~~~d~vI~a~p~~  274 (451)
T PRK11883        217 KGGLQSLIEALEEKLPAGTIHKGTPVTKIDKS-GDG-YEIVLSN---------------GGEIEADAVIVAVPHP  274 (451)
T ss_pred             ccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECCCHH
Confidence            34444444444445554 89999999999886 343 3455544               3579999999997754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=86.60  E-value=4.1  Score=36.35  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +-.++.+..++.||+|++++.+.++... ++. ..|...+      |+.      +.++.++.||.|.|.....
T Consensus       222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~------~~~------~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD------STN------GIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             HHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEec------CCc------ceEEEeCEEEEEecCCcCC
Confidence            4456667778899999999999998764 333 2344432      110      1379999999999988765

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=86.31  E-value=3.6  Score=40.07  Aligned_cols=67  Identities=16%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccc--c-ccCCCCCCCCCCcC--eEEEcCEEEEcccCCcc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDV--G-IAKDGSPKDTFARG--MELHAKVTIFAEGCHGH  141 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~--g-~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~  141 (165)
                      .+.|.+.||++++.+.+++++-++ +++|.+|++..+  | -|.+|+..+.. +|  .++.||.||+|.|....
T Consensus       491 ~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~-~G~e~~i~aD~VI~AiG~~p~  563 (944)
T PRK12779        491 LHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKP-TGEIERVPVDLVIMALGNTAN  563 (944)
T ss_pred             HHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeec-CCceEEEECCEEEEcCCcCCC
Confidence            455778899999999999997652 347888765421  0 12334321111 12  36999999999998764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=85.65  E-value=2.2  Score=37.04  Aligned_cols=53  Identities=15%  Similarity=0.176  Sum_probs=35.6

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEE--cCEEEEcccCCcc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHGH  141 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~--Ak~VI~A~G~~s~  141 (165)
                      ..+..++.|++++.++.|.+|..+ +..   |.+.+.   .+         +..+.  +|.+|+|+|+...
T Consensus        62 ~~~~~~~~gv~~~~~~~V~~id~~-~~~---v~~~~~---~~---------~~~~~~~yd~lviAtG~~~~  116 (444)
T PRK09564         62 TPEEFIKSGIDVKTEHEVVKVDAK-NKT---ITVKNL---KT---------GSIFNDTYDKLMIATGARPI  116 (444)
T ss_pred             CHHHHHHCCCeEEecCEEEEEECC-CCE---EEEEEC---CC---------CCEEEecCCEEEECCCCCCC
Confidence            345567789999999999999764 332   333220   01         12455  9999999998753

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=85.61  E-value=4.4  Score=35.79  Aligned_cols=54  Identities=22%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             HHHHHHHHCCCEEecCCceeEEE--EcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVL--YHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~--~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+.+.+++.||+++.+.. ..+.  .+ ... +-|.+.+      |+.       .++.+|.||+|+|+...
T Consensus        97 ~~~~~l~~~gV~~~~g~~-~~~~~~~~-~~~-v~V~~~~------g~~-------~~~~~d~lViATGs~p~  152 (466)
T PRK07845         97 DIRARLEREGVRVIAGRG-RLIDPGLG-PHR-VKVTTAD------GGE-------ETLDADVVLIATGASPR  152 (466)
T ss_pred             HHHHHHHHCCCEEEEEEE-EEeecccC-CCE-EEEEeCC------Cce-------EEEecCEEEEcCCCCCC
Confidence            455667778999998753 3222  22 232 3344432      211       26999999999998763

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=84.92  E-value=3.1  Score=35.78  Aligned_cols=44  Identities=14%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          78 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        78 ~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.|++++.++.|..+-.+ +.   -|.+.+               |.++.+|.+|+|+|+..
T Consensus        69 ~~~~i~~~~g~~V~~id~~-~~---~v~~~~---------------g~~~~yd~LViATGs~~  112 (396)
T PRK09754         69 QENNVHLHSGVTIKTLGRD-TR---ELVLTN---------------GESWHWDQLFIATGAAA  112 (396)
T ss_pred             HHCCCEEEcCCEEEEEECC-CC---EEEECC---------------CCEEEcCEEEEccCCCC
Confidence            4679999999999998664 23   244443               35799999999999886

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=84.79  E-value=4.7  Score=33.73  Aligned_cols=59  Identities=25%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEE--EEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--IATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~G--V~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+-..+.+..++.||++++++.+.++... .+.+..  +...+               +..+.++.++.+.|....
T Consensus       178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~---------------~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         178 PEVAEELAELLEKYGVELLLGTKVVGVEGK-GNTLVVERVVGID---------------GEEIKADLVIIGPGERPN  238 (415)
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCceEEEEcc-cCcceeeEEEEeC---------------CcEEEeeEEEEeeccccc
Confidence            678889999999999999999999999774 343333  23332               358999999999998884

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=84.76  E-value=3.5  Score=36.98  Aligned_cols=62  Identities=18%  Similarity=0.171  Sum_probs=44.6

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +..|.++.++ .||++++++.++++.-+ ++++.+|.+.+.   .+|+.       .++.+|.|+.|.|.....
T Consensus       389 ~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~~-------~~i~~D~v~~~~G~~p~~  451 (517)
T PRK15317        389 DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGEE-------HHLELEGVFVQIGLVPNT  451 (517)
T ss_pred             cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCcE-------EEEEcCEEEEeECCccCc
Confidence            3445555555 59999999999999764 578888876531   12321       369999999999988743

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=84.75  E-value=2.1  Score=36.11  Aligned_cols=54  Identities=13%  Similarity=0.035  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ++...+.+.+++.|++++.+ +|+.|..+  ++  .|.+.+               |.++..|.+|+|+|+...
T Consensus        55 ~~~~~~~~~~~~~gv~~~~~-~v~~id~~--~~--~V~~~~---------------g~~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        55 EIRIDLRRLARQAGARFVIA-EATGIDPD--RR--KVLLAN---------------RPPLSYDVLSLDVGSTTP  108 (364)
T ss_pred             HhcccHHHHHHhcCCEEEEE-EEEEEecc--cC--EEEECC---------------CCcccccEEEEccCCCCC
Confidence            33334556677889999875 78888664  33  355554               347999999999998764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=84.73  E-value=2.8  Score=39.75  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=36.6

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+..++.|++++.+++|+.|..+  .+  -|.+.+               |.++.+|.+|+|+|+...
T Consensus        61 ~~~~~~~gv~~~~g~~V~~Id~~--~k--~V~~~~---------------g~~~~yD~LVlATGs~p~  109 (785)
T TIGR02374        61 KDWYEKHGITLYTGETVIQIDTD--QK--QVITDA---------------GRTLSYDKLILATGSYPF  109 (785)
T ss_pred             HHHHHHCCCEEEcCCeEEEEECC--CC--EEEECC---------------CcEeeCCEEEECCCCCcC
Confidence            34456789999999999999664  33  245543               357999999999998753

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=84.67  E-value=3.5  Score=37.49  Aligned_cols=69  Identities=14%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             HHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486          73 LGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFN  151 (165)
Q Consensus        73 L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g  151 (165)
                      +...|.+ -+..|.+++.|+.|+++ .++++||.....    ++.+.     -..+.++.||+|+|+..  +.+|....|
T Consensus       208 ~l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~----~~~~~-----~~~~a~~~viL~AGai~--Sp~LL~~Sg  275 (542)
T COG2303         208 YLKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIG----DGGTI-----ETAVAAREVVLAAGAIN--SPKLLLLSG  275 (542)
T ss_pred             cchhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeC----CCCce-----EEEecCceEEEeccccC--CHHHHHhcC
Confidence            3444555 55999999999999997 789999888741    12111     13567899999999776  567666666


Q ss_pred             CC
Q psy9486         152 LR  153 (165)
Q Consensus       152 l~  153 (165)
                      +-
T Consensus       276 ig  277 (542)
T COG2303         276 IG  277 (542)
T ss_pred             CC
Confidence            53

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=83.99  E-value=5  Score=34.81  Aligned_cols=56  Identities=7%  Similarity=0.183  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          67 GHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        67 ~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .-+..+.-..+++++ ++|+++++|+.|..+ ++.+ .|++.+               |..+.||.||+|.-..
T Consensus       222 gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~-~~~~-~v~~~~---------------g~~~~ad~VI~t~P~~  278 (462)
T TIGR00562       222 TGLETLPEEIEKRLKLTKVYKGTKVTKLSHR-GSNY-TLELDN---------------GVTVETDSVVVTAPHK  278 (462)
T ss_pred             hhHHHHHHHHHHHhccCeEEcCCeEEEEEec-CCcE-EEEECC---------------CcEEEcCEEEECCCHH
Confidence            334433333344454 799999999999885 3433 355543               3479999999998754

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02676 polyamine oxidase

Probab=83.50  E-value=4.9  Score=35.94  Aligned_cols=42  Identities=21%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      +..|.++++|++|..++ +.| -|.+.+               |.+++|+.||+|....
T Consensus       244 ~~~I~l~~~V~~I~~~~-~gV-~V~~~~---------------G~~~~a~~VIvtvPl~  285 (487)
T PLN02676        244 DPRLKLNKVVREISYSK-NGV-TVKTED---------------GSVYRAKYVIVSVSLG  285 (487)
T ss_pred             CCceecCCEeeEEEEcC-CcE-EEEECC---------------CCEEEeCEEEEccChH
Confidence            37899999999998863 333 356654               4579999999999744

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=83.46  E-value=5.8  Score=36.83  Aligned_cols=68  Identities=21%  Similarity=0.159  Sum_probs=41.1

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcE--EEEEEccccccCCCCCCCCCCcCe--EEEcCEEEEcccCCcc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSV--KGIATGDVGIAKDGSPKDTFARGM--ELHAKVTIFAEGCHGH  141 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V--~GV~~~~~g~~~~g~~~~~~~~g~--~i~Ak~VI~A~G~~s~  141 (165)
                      ..++|.+.||+|++.+.+.++.-+ ++++  ..++......|.+|+..+.+..|.  .+.+|.||+|.|....
T Consensus       367 ei~~a~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~  438 (652)
T PRK12814        367 EIEEALAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD  438 (652)
T ss_pred             HHHHHHHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence            356667889999999999998764 4543  223222111123343222122232  5999999999997654

>PRK07846 mycothione reductase; Reviewed

Probab=83.14  E-value=5.7  Score=35.00  Aligned_cols=48  Identities=19%  Similarity=0.165  Sum_probs=35.9

Q ss_pred             HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          78 EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        78 ~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.|++++++++++++..+ ++.+ .|.+.+               |.++.++.||+|+|.....
T Consensus       217 ~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        217 ASKRWDVRLGRNVVGVSQD-GSGV-TLRLDD---------------GSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             HhcCeEEEeCCEEEEEEEc-CCEE-EEEECC---------------CcEeecCEEEEEECCccCc
Confidence            4578999999999999764 3332 344433               3579999999999998765

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=82.81  E-value=3.5  Score=35.67  Aligned_cols=48  Identities=13%  Similarity=0.142  Sum_probs=32.9

Q ss_pred             HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEE--cCEEEEcccCCc
Q psy9486          77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH--AKVTIFAEGCHG  140 (165)
Q Consensus        77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~--Ak~VI~A~G~~s  140 (165)
                      +++.|++++.++.|+.+-.+ +..| -+....     +         +..+.  +|.+|+|+|+..
T Consensus        54 ~~~~gv~~~~~~~V~~id~~-~~~v-~~~~~~-----~---------~~~~~~~yd~lIiATG~~p  103 (427)
T TIGR03385        54 IKKRGIDVKTNHEVIEVNDE-RQTV-VVRNNK-----T---------NETYEESYDYLILSPGASP  103 (427)
T ss_pred             HHhcCCeEEecCEEEEEECC-CCEE-EEEECC-----C---------CCEEecCCCEEEECCCCCC
Confidence            36789999999999998653 3322 232221     1         23577  999999999865

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=82.73  E-value=6.3  Score=33.31  Aligned_cols=70  Identities=23%  Similarity=0.336  Sum_probs=43.1

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccccc---CCCCCCC--CCCcCeEEEcCEEEEcccCCccc
Q psy9486          71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA---KDGSPKD--TFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~---~~g~~~~--~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.++.++.|+++++++.+.++.-  ++++.+|+..+...+   ..+.+..  .-..+..+.++.||.|.|.....
T Consensus       214 ~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~  288 (352)
T PRK12770        214 KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP  288 (352)
T ss_pred             HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence            3556667889999999999999853  356666665321100   0000000  00012479999999999988743

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=82.10  E-value=5.6  Score=36.05  Aligned_cols=58  Identities=14%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG  140 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s  140 (165)
                      |.+-.++.||++.++++|++|.++.+   ..+.++....     +|...     ...+.. |+|++..|.-.
T Consensus       213 l~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~-----~g~~~-----~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  213 LIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ-----DGKEE-----TIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc-----CCCee-----EEEeCCCCEEEEECCccc
Confidence            67778899999999999999998532   2445565553     44332     133433 88998888543

>TIGR03452 mycothione_red mycothione reductase

Probab=81.76  E-value=6.6  Score=34.56  Aligned_cols=49  Identities=20%  Similarity=0.170  Sum_probs=36.0

Q ss_pred             HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.|+++++++.|+++..+ ++.+ .|.+.+               |.++.++.||+|.|.....
T Consensus       219 ~~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       219 IAKKKWDIRLGRNVTAVEQD-GDGV-TLTLDD---------------GSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             HHhcCCEEEeCCEEEEEEEc-CCeE-EEEEcC---------------CCEEEcCEEEEeeccCcCC
Confidence            34569999999999999764 3332 244432               3479999999999988755

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=81.55  E-value=7.3  Score=34.10  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ...+.+..++.||+++.+ ++..+  + ...+ -|. .+               |.++.++.||+|+|+...
T Consensus        93 ~~~~~~~l~~~gV~~~~g-~~~~v--~-~~~v-~v~-~~---------------g~~~~~d~lIiATGs~p~  143 (446)
T TIGR01424        93 SGLYKRLLANAGVELLEG-RARLV--G-PNTV-EVL-QD---------------GTTYTAKKILIAVGGRPQ  143 (446)
T ss_pred             HHHHHHHHHhCCcEEEEE-EEEEe--c-CCEE-EEe-cC---------------CeEEEcCEEEEecCCcCC
Confidence            345566677889999876 44443  2 2222 222 11               247999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK10262 thioredoxin reductase; Provisional

Probab=81.39  E-value=9.5  Score=31.58  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=39.0

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +-..+-+++.+.+...++++..+ .|..+... ++. .-+.+..                ..+.+|.||+|+|.+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~-~~~-~~v~~~~----------------~~~~~d~vilAtG~~~  117 (321)
T PRK10262         61 TGPLLMERMHEHATKFETEIIFD-HINKVDLQ-NRP-FRLTGDS----------------GEYTCDALIIATGASA  117 (321)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEee-EEEEEEec-CCe-EEEEecC----------------CEEEECEEEECCCCCC
Confidence            34456677888888899988775 56666654 332 2233221                2689999999999875

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=81.34  E-value=4.1  Score=39.19  Aligned_cols=48  Identities=19%  Similarity=0.169  Sum_probs=35.5

Q ss_pred             HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +..++.|++++.+++|..+-.+  .+  -|.+.+               |.++.+|.+|+|+|++..
T Consensus        67 ~~~~~~gI~~~~g~~V~~Id~~--~~--~V~~~~---------------G~~i~yD~LVIATGs~p~  114 (847)
T PRK14989         67 GFYEKHGIKVLVGERAITINRQ--EK--VIHSSA---------------GRTVFYDKLIMATGSYPW  114 (847)
T ss_pred             HHHHhCCCEEEcCCEEEEEeCC--Cc--EEEECC---------------CcEEECCEEEECCCCCcC
Confidence            3455689999999999988553  33  234443               357999999999998764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=80.93  E-value=8.9  Score=33.94  Aligned_cols=61  Identities=11%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      +-..+.+..++. +++++++.|+++..+ ++.+ .|...+    .+|+       ..++.++.||+|.|......
T Consensus       217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~-~~~~-~v~~~~----~~~~-------~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        217 IVKVFTKRIKKQ-FNIMLETKVTAVEAK-EDGI-YVTMEG----KKAP-------AEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             HHHHHHHHHhhc-eEEEcCCEEEEEEEc-CCEE-EEEEEe----CCCc-------ceEEEeCEEEEeecccccCC
Confidence            344556666667 999999999999764 3332 344332    1121       14699999999999988764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.29  E-value=3.3  Score=36.46  Aligned_cols=59  Identities=19%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEc-CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+|...|.++.++.-|+++...+++++.-- +.+..+-|++.+               |-.++||-||+|+|++=
T Consensus       266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n---------------GavLkaktvIlstGArW  325 (520)
T COG3634         266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN---------------GAVLKARTVILATGARW  325 (520)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC---------------CceeccceEEEecCcch
Confidence            467888999999999999999999999762 235566787775               56899999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
2gmh_A	584	Structure Of Porcine Electron Transfer Flavoprotein		1e-65

>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein- Ubiquinone Oxidoreductase In Complexed With Ubiquinone Length = 584

Iteration: 1
 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%)
Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 78  AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 137
Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 138 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT 197
Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C
Sbjct: 198 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	7e-87
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-20
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-07
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	4e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	8e-04

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score =  264 bits (676), Expect = 7e-87
 Identities = 111/158 (70%), Positives = 128/158 (81%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 78  AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 137

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 138 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT 197

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMS 158
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C  
Sbjct: 198 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEP 235

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 84.4 bits (208), Expect = 3e-20
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 10/157 (6%)

Query: 1   GHILSGAVIDP--IALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNN 58
           G    G  +    +          ++G P      E  +  +  +      +L  + +  
Sbjct: 118 GGAWLGGQLFSAMVMRKPADVFLDEVGVPYED---EGDYVVVKHAALFTSTVLSKV-LQR 173

Query: 59  HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 118
               +     V   +  +  A            E        + G+ T    ++     +
Sbjct: 174 PNVKLFNATTVEDLITRKHHAESSSSSDD---GEAEDEAKVRIAGVVTNWTLVSMHHDDQ 230

Query: 119 DTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQ 155
                   ++A V I   G  G        R     Q
Sbjct: 231 SAM-DPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQ 266

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 21/145 (14%)

Query: 9   IDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 68
           +     ++L   +   G  L   +   K  Y    + +      G        + +    
Sbjct: 52  VSKAHFDKLGMPYPK-GEELENKINGIKL-YSPDMQTVWTVNGEG--------FELNAPL 101

Query: 69  VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH 128
             + + ++A+  GVEI+    A + ++  DG VKG    +    ++            ++
Sbjct: 102 YNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEEL----------TVY 150

Query: 129 AKVTIFAEGCHGHLTKSLSSRFNLR 153
           +KV + A G        L     + 
Sbjct: 151 SKVVVEATGYSRSFRSKLPPELPIT 175

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 22/119 (18%)

Query: 53  GMPMNNHGNYVVRL---GHVVKWLGEQAEAMGVEIYPGIPASEVLYH-----GDGSVKGI 104
            +P  + G+YVV       +   L +  +   V+++      +++       G+ +V G+
Sbjct: 130 EIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGV 189

Query: 105 ATG--------------DVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR 149
            T               D  + +    K+   R +     V +   G  G      + R
Sbjct: 190 VTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKR 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.86
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.31
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.94
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.93
3atr_A	453	Conserved archaeal protein; saturating double bond	98.78
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.72
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.59
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.56
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.51
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.47
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.47
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.45
3dme_A	369	Conserved exported protein; structural genomics, P	98.44
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.44
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.42
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.42
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.4
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.34
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.34
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.32
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.31
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.3
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.29
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.29
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.28
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.26
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.26
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.26
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.25
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.24
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.24
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.23
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.22
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.22
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.11
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.11
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.1
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.1
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.09
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.08
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.02
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.0
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.99
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.97
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.94
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.92
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.9
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.86
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.84
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.8
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.8
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.77
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.77
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.77
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.76
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.68
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.67
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.67
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.67
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.62
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.6
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.6
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.6
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.59
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.58
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.56
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.56
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.54
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.48
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.47
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.45
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.44
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.43
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.38
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.32
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.27
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.18
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.12
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.99
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.95
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.93
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.91
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.82
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.79
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.79
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.78
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.68
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.58
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.57
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.54
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.52
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.49
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.49
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.46
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.43
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.42
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.39
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.39
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.37
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.34
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.34
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.32
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.31
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.3
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.29
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.26
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.25
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.25
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.25
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.24
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.19
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.18
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.11
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.1
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.09
4dna_A	463	Probable glutathione reductase; structural genomic	96.06
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.03
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.99
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.97
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.93
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.92
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.87
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	95.77
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.76
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.74
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.74
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.64
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.63
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.61
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.53
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.5
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	95.38
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	95.27
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.18
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.17
3r9u_A	315	Thioredoxin reductase; structural genomics, center	95.15
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.09
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	95.02
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	95.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	94.87
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	94.86
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.83
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.81
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.78
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.77
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.75
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.74
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.69
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.51
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	94.47
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	94.33
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.33
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	94.31
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.29
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.27
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	94.26
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	93.87
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	93.76
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.65
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	93.28
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	93.24
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	93.17
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	93.12
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	93.11
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.02
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	92.93
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.75
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	92.74
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	92.55
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	92.51
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	92.43
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.42
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	92.37
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.32
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.29
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.29
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.18
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	92.09
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	91.86
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	91.77
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	91.58
1ojt_A	482	Surface protein; redox-active center, glycolysis,	91.47
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	91.38
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	91.23
4fk1_A	304	Putative thioredoxin reductase; structural genomic	91.15
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	91.07
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	90.97
3r9u_A	315	Thioredoxin reductase; structural genomics, center	90.62
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.21
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	89.83
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	89.63
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	89.44
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	89.34
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	89.24
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	89.17
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	88.67
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	88.42
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	88.17
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	87.98
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	87.83
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	87.23
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	87.1
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	87.02
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	86.66
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	86.66
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	86.55
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	86.55
4fk1_A	304	Putative thioredoxin reductase; structural genomic	86.13
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	85.76
1ojt_A	482	Surface protein; redox-active center, glycolysis,	85.57
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	85.53
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	85.04
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	84.55
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	84.02
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	82.89
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	82.58
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	82.3
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	82.05
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	81.42
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	81.35
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	81.04
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	81.04
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	80.63
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	80.06

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.86  E-value=3.6e-21  Score=171.74  Aligned_cols=160  Identities=69%  Similarity=1.224  Sum_probs=137.8

Q ss_pred             CceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486           1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM   80 (165)
Q Consensus         1 ~h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~   80 (165)
                      +|+++|++|.+++|++|+|+|.+.+.|+.+.+..+.+.+++....+.+|+.+...+.+.++|+++|..|++||.++|++.
T Consensus        78 ~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~  157 (584)
T 2gmh_A           78 AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL  157 (584)
T ss_dssp             TTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHT
T ss_pred             CccccccccCHHHHHHHHHHHHhcCCceeeeechhheeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHc
Confidence            36789999999999999999988789988878888898888776677764322023456689999999999999999999


Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG  160 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~  160 (165)
                      ||+|+++++|+++..+++++|+||.+.++|++++|+++++|++|.+++||+||+|+|++|.+.++|.+++|+.....|++
T Consensus       158 Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~  237 (584)
T 2gmh_A          158 GVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQT  237 (584)
T ss_dssp             TCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCC
T ss_pred             CCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchh
Confidence            99999999999999975688999999988888899988899999999999999999999999999999999876555543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.31  E-value=8.3e-12  Score=102.72  Aligned_cols=128  Identities=21%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             eeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCc--eEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486           3 ILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM   80 (165)
Q Consensus         3 ~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~--~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~   80 (165)
                      ..+|+.|.++.|+++-  +......+.+.+  .++.+.+++.  .+..+...   ..+..+|+++|..|+++|+++|++.
T Consensus        43 ~~~g~~l~~~~l~~l~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~R~~~~~~L~~~a~~~  115 (397)
T 3oz2_A           43 VRCGEGLSKGILNEAD--IKADRSFIANEV--KGARIYGPSEKRPIILQSEK---AGNEVGYVLERDKFDKHLAALAAKA  115 (397)
T ss_dssp             CCSCCEEETHHHHHTT--CCCCTTTEEEEE--SEEEEECTTCSSCEEEECSS---SSCCCEEEECHHHHHHHHHHHHHHH
T ss_pred             CceecccCHHHHHHcC--CCchhhhhhccc--ceEEEEeCCCceEeeccccc---cCCceeEEEEHHHHHHHHHHHHHhc
Confidence            3457778777777763  111111222233  3455555443  34333321   2245589999999999999999999


Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRG  154 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~  154 (165)
                      |++++++++|+++..+ ++++++|....     +|+       ..+++|++||+|+|.+|.++++    +|+..
T Consensus       116 G~~~~~~~~v~~~~~~-~~~~~~v~~~~-----~~~-------~~~~~a~~vIgAdG~~S~vr~~----~g~~~  172 (397)
T 3oz2_A          116 GADVWVKSPALGVIKE-NGKVAGAKIRH-----NNE-------IVDVRAKMVIAADGFESEFGRW----AGLKS  172 (397)
T ss_dssp             TCEEESSCCEEEEEEE-TTEEEEEEEEE-----TTE-------EEEEEEEEEEECCCTTCHHHHH----HTCGG
T ss_pred             CcEEeeeeeeeeeeec-cceeeeeeecc-----ccc-------ceEEEEeEEEeCCccccHHHHH----cCCCc
Confidence            9999999999999886 78888887654     221       2479999999999999988777    56543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.93  E-value=6.3e-09  Score=87.22  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=75.3

Q ss_pred             eceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccC
Q psy9486          34 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK  113 (165)
Q Consensus        34 ~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~  113 (165)
                      ...+.|...+....+++..........+|.++|..|+++|.+.|++.||+|+++++|+++..++++.++.|.+.+     
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~-----  147 (421)
T 3nix_A           73 KFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDIN-----  147 (421)
T ss_dssp             ECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETT-----
T ss_pred             cCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC-----
Confidence            345556555555566664332222345899999999999999999999999999999999986445445555543     


Q ss_pred             CCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCC
Q psy9486         114 DGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRG  154 (165)
Q Consensus       114 ~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~  154 (165)
                       |+.       .+++|+.||+|+|.+|.+.+.    +|+..
T Consensus       148 -g~~-------~~~~a~~vV~A~G~~s~l~~~----~g~~~  176 (421)
T 3nix_A          148 -GNK-------REIEARFIIDASGYGRVIPRM----FGLDK  176 (421)
T ss_dssp             -SCE-------EEEEEEEEEECCGGGCHHHHH----TTCEE
T ss_pred             -CCE-------EEEEcCEEEECCCCchhhHHh----cCCCC
Confidence             321       269999999999999977655    66643

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.78  E-value=3.1e-08  Score=84.79  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+|.++|..|+++|.++|++.|++|+++++|+++..+ +++|+||.+.+.   .+|+.       .+++|++||+|+|.+
T Consensus        93 ~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~---~~G~~-------~~~~ad~VV~AdG~~  161 (453)
T 3atr_A           93 EGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNR---RTNEE-------LTVYSKVVVEATGYS  161 (453)
T ss_dssp             EEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEET---TTTEE-------EEEECSEEEECCGGG
T ss_pred             CcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEc---CCCce-------EEEEcCEEEECcCCc
Confidence            3799999999999999999999999999999999886 678888877531   02321       279999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.+.+.
T Consensus       162 s~vr~~  167 (453)
T 3atr_A          162 RSFRSK  167 (453)
T ss_dssp             CTTGGG
T ss_pred             hhhHHh
Confidence            998776

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.72  E-value=6.2e-08  Score=84.43  Aligned_cols=76  Identities=18%  Similarity=0.281  Sum_probs=65.7

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|.++|..|+++|.+.|++.||+|+++++|+++..+ +++|.||.+..    .+|+.       .+++|+.||+|+|.
T Consensus       103 ~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~----~dG~~-------~~i~ad~VI~AdG~  170 (512)
T 3e1t_A          103 GFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRN----TEGVE-------LMAHARFIVDASGN  170 (512)
T ss_dssp             CCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEEC----SSSCE-------EEEEEEEEEECCCT
T ss_pred             ceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEe----CCCCE-------EEEEcCEEEECCCc
Confidence            45799999999999999999999999999999999986 68888888764    34432       37999999999999


Q ss_pred             CcccchHH
Q psy9486         139 HGHLTKSL  146 (165)
Q Consensus       139 ~s~l~~~l  146 (165)
                      +|.+.+++
T Consensus       171 ~S~vr~~l  178 (512)
T 3e1t_A          171 RTRVSQAV  178 (512)
T ss_dssp             TCSSGGGT
T ss_pred             chHHHHHc
Confidence            99998873

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.59  E-value=1.7e-07  Score=81.12  Aligned_cols=71  Identities=23%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|.++|..|+++|.+.|++.||+++++ +|+++..++++.+++|.+.+               |.+++|+.||+|+|.
T Consensus       165 ~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~---------------g~~~~ad~vV~A~G~  228 (511)
T 2weu_A          165 PYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQ---------------HGEISGDLFVDCTGF  228 (511)
T ss_dssp             SCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESS---------------SCEEECSEEEECCGG
T ss_pred             CeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECC---------------CCEEEcCEEEECCCc
Confidence            34789999999999999999999999999 99999886567888888865               357999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.++
T Consensus       229 ~S~~~~~  235 (511)
T 2weu_A          229 RGLLINQ  235 (511)
T ss_dssp             GCCCCCC
T ss_pred             chHHHHH
Confidence            9988544

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.56  E-value=3.5e-07  Score=76.37  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=61.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEE-EEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVK-GIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~-GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .++.++|..|+++|.+++++. |++|+++++|+++..+ ++.|+ .|.+.+               |.+++||+||+|+|
T Consensus       100 ~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~g~v~~~~---------------g~~~~ad~vV~AdG  163 (399)
T 2x3n_A          100 YFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRD-ERHAIDQVRLND---------------GRVLRPRVVVGADG  163 (399)
T ss_dssp             CEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEEC-TTSCEEEEEETT---------------SCEEEEEEEEECCC
T ss_pred             ccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc-CCceEEEEEECC---------------CCEEECCEEEECCC
Confidence            368999999999999999998 9999999999999886 45554 566654               35799999999999


Q ss_pred             CCcccchHHHhhcCCC
Q psy9486         138 CHGHLTKSLSSRFNLR  153 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~  153 (165)
                      .+|.+.+.    +|+.
T Consensus       164 ~~s~vr~~----lg~~  175 (399)
T 2x3n_A          164 IASYVRRR----LLDI  175 (399)
T ss_dssp             TTCHHHHH----TSCC
T ss_pred             CChHHHHH----hCCC
Confidence            99987665    6654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.51  E-value=4.9e-07  Score=78.99  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=60.3

Q ss_pred             CcEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+|.++|..|+++|.+.|++ .||+++.+ +|+++..++++.+++|.+.+               |.+++|++||+|+|.
T Consensus       168 ~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~---------------g~~i~ad~vV~AdG~  231 (526)
T 2pyx_A          168 YGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQ---------------NGEISGQLFIDCTGA  231 (526)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESS---------------SCEEECSEEEECSGG
T ss_pred             eeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECC---------------CCEEEcCEEEECCCc
Confidence            46899999999999999999 99999999 69999886567777888764               347999999999999


Q ss_pred             Cccc-chH
Q psy9486         139 HGHL-TKS  145 (165)
Q Consensus       139 ~s~l-~~~  145 (165)
                      +|.+ .+.
T Consensus       232 ~S~~~~~~  239 (526)
T 2pyx_A          232 KSLLLGEH  239 (526)
T ss_dssp             GCCCCCCC
T ss_pred             chHHHHHH
Confidence            9988 444

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.47  E-value=6.1e-07  Score=75.79  Aligned_cols=63  Identities=22%  Similarity=0.345  Sum_probs=56.5

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCC---ceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGI---PASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~---~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..++...+.+.|.+.|++.||+|++++   +|++|..+ +++|+||++.+               |.+++|+.||+|+|+
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~---------------G~~i~Ad~VV~AtG~  219 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTAD---------------GKIWRAERTFLCAGA  219 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETT---------------TEEEECSEEEECCGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECC---------------CCEEECCEEEECCCC
Confidence            456677899999999999999999999   99999986 68899999976               458999999999999


Q ss_pred             Cc
Q psy9486         139 HG  140 (165)
Q Consensus       139 ~s  140 (165)
                      ++
T Consensus       220 ~s  221 (438)
T 3dje_A          220 SA  221 (438)
T ss_dssp             GG
T ss_pred             Ch
Confidence            97

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.47  E-value=4.6e-07  Score=79.70  Aligned_cols=69  Identities=19%  Similarity=0.254  Sum_probs=60.8

Q ss_pred             CcEEEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+|.++|..|+++|.+.|++. ||+++++ +|+++..++++.+++|.+.+               |.++.|+.||+|+|.
T Consensus       187 ~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~---------------G~~i~ad~vI~A~G~  250 (550)
T 2e4g_A          187 YAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTAT---------------GRVFDADLFVDCSGF  250 (550)
T ss_dssp             CEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETT---------------SCEEECSEEEECCGG
T ss_pred             cceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECC---------------CCEEECCEEEECCCC
Confidence            478999999999999999998 9999999 99999886567888888875               457999999999999


Q ss_pred             Ccccch
Q psy9486         139 HGHLTK  144 (165)
Q Consensus       139 ~s~l~~  144 (165)
                      +|.+.+
T Consensus       251 ~S~~~~  256 (550)
T 2e4g_A          251 RGLLIN  256 (550)
T ss_dssp             GCCCCC
T ss_pred             chhhHH
Confidence            998833

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.45  E-value=6.4e-07  Score=73.44  Aligned_cols=72  Identities=14%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++...+.++|.+.|+++|++|+++++|++|..+ ++. ++|++.+               | +++|+.||+|+|+++
T Consensus       148 ~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~---------------g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          148 GADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDA---------------G-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSS---------------E-EEEESEEEECCGGGH
T ss_pred             CceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCC---------------C-EEEcCEEEECCChhH
Confidence            456788999999999999999999999999999986 454 6787765               3 899999999999997


Q ss_pred             ccchHHHhhcCCC
Q psy9486         141 HLTKSLSSRFNLR  153 (165)
Q Consensus       141 ~l~~~l~~~~gl~  153 (165)
                         .++.+.+|+.
T Consensus       210 ---~~l~~~~g~~  219 (381)
T 3nyc_A          210 ---DAIAGLAGVR  219 (381)
T ss_dssp             ---HHHHHHHTCC
T ss_pred             ---HHHHHHhCCC
Confidence               5566667764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.44  E-value=9.3e-07  Score=71.89  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...++...+.+.|.+.|++.|++|+++++|++|..++ +.++.|.+.+      |+.       .+++|+.||+|+|.++
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~------g~~-------~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          144 TGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRP-EGGFELDFGG------AEP-------MTLSCRVLINAAGLHA  209 (369)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECT-TSSEEEEECT------TSC-------EEEEEEEEEECCGGGH
T ss_pred             CEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC-CceEEEEECC------Cce-------eEEEeCEEEECCCcch
Confidence            3467888999999999999999999999999999863 4334577654      211       4799999999999996


Q ss_pred             ccchHHHhhc-CCC
Q psy9486         141 HLTKSLSSRF-NLR  153 (165)
Q Consensus       141 ~l~~~l~~~~-gl~  153 (165)
                         .+|.+.+ |+.
T Consensus       210 ---~~l~~~~~g~~  220 (369)
T 3dme_A          210 ---PGLARRIEGIP  220 (369)
T ss_dssp             ---HHHHHTEETSC
T ss_pred             ---HHHHHHhcCCC
Confidence               6777778 774

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.44  E-value=4.3e-07  Score=81.20  Aligned_cols=74  Identities=18%  Similarity=0.252  Sum_probs=62.8

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|.++|..|+++|.+.|++.||+++++++|+++..+ ++.+++|.+.+     +|..       .+++|+.||+|+|.
T Consensus       120 ~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~-----~G~~-------~~i~AdlVV~AdG~  186 (591)
T 3i3l_A          120 DHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRR-----GGES-------VTVESDFVIDAGGS  186 (591)
T ss_dssp             SCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEE-----TTEE-------EEEEESEEEECCGG
T ss_pred             CeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEec-----CCce-------EEEEcCEEEECCCC
Confidence            45799999999999999999999999999999999875 57778888863     1211       47999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.++
T Consensus       187 ~S~lr~~  193 (591)
T 3i3l_A          187 GGPISRK  193 (591)
T ss_dssp             GCHHHHH
T ss_pred             cchhHHH
Confidence            9987666

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.42  E-value=7e-07  Score=78.12  Aligned_cols=71  Identities=21%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|.++|..|+++|.+.|++.||+++.+ +|+++..++++.+++|.+.+               |.+++|+.||+|+|.
T Consensus       157 ~~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~---------------g~~i~ad~vV~A~G~  220 (538)
T 2aqj_A          157 SHAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKE---------------GRTLEADLFIDCSGM  220 (538)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETT---------------SCEECCSEEEECCGG
T ss_pred             CccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECC---------------CcEEEeCEEEECCCC
Confidence            34789999999999999999999999999 89999886567778888865               347999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.++
T Consensus       221 ~s~~~~~  227 (538)
T 2aqj_A          221 RGLLINQ  227 (538)
T ss_dssp             GCCCCCC
T ss_pred             chhhHHH
Confidence            9988443

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.42  E-value=1.2e-06  Score=72.40  Aligned_cols=72  Identities=11%  Similarity=0.175  Sum_probs=60.1

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..++...+.+.|.+.|++.|++|+++++|+++..+ +++++||++.+               | +++|+.||+|+|.++ 
T Consensus       144 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~---------------g-~i~a~~VV~A~G~~s-  205 (382)
T 1y56_B          144 GKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNK---------------G-IIKTGIVVNATNAWA-  205 (382)
T ss_dssp             CEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETT---------------E-EEECSEEEECCGGGH-
T ss_pred             eeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECC---------------c-EEECCEEEECcchhH-
Confidence            35678899999999999999999999999999986 67888898865               3 799999999999997 


Q ss_pred             cchHHHhhcCCC
Q psy9486         142 LTKSLSSRFNLR  153 (165)
Q Consensus       142 l~~~l~~~~gl~  153 (165)
                        ..+.+.+|+.
T Consensus       206 --~~l~~~~g~~  215 (382)
T 1y56_B          206 --NLINAMAGIK  215 (382)
T ss_dssp             --HHHHHHHTCC
T ss_pred             --HHHHHHcCCC
Confidence              3444446654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.40  E-value=7.1e-07  Score=77.74  Aligned_cols=71  Identities=21%  Similarity=0.280  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCcccchHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s~l~~~l  146 (165)
                      .+.+.|.++|++.||+|+++++|++|+.+++|+|+||++.+     +|..       .+|+| |.||+|+|.++.. ++|
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-----~g~~-------~~i~A~k~VVlAtGG~~~n-~~m  269 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-----YGKE-------VAVRARRGVVLATGSFAYN-DKM  269 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE-----TTEE-------EEEEEEEEEEECCCCCTTC-HHH
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE-----CCcE-------EEEEeCCeEEEeCCChhhC-HHH
Confidence            78999999999999999999999999996569999998875     2211       36999 5999999999976 566


Q ss_pred             HhhcC
Q psy9486         147 SSRFN  151 (165)
Q Consensus       147 ~~~~g  151 (165)
                      .++|-
T Consensus       270 ~~~~~  274 (510)
T 4at0_A          270 IEAHA  274 (510)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            66663

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.34  E-value=1.5e-06  Score=75.79  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .++.+++..+.+.|.+.|++.|++|+.+++|+++..++ +.|+ |.+.+    .+|+        .+++|++||+|+|++
T Consensus       100 ~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~----~~g~--------~~~~a~~vVgADG~~  165 (499)
T 2qa2_A          100 GVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEG-DHVV-VEVEG----PDGP--------RSLTTRYVVGCDGGR  165 (499)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECS-SCEE-EEEEC----SSCE--------EEEEEEEEEECCCTT
T ss_pred             ceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEc----CCCc--------EEEEeCEEEEccCcc
Confidence            46899999999999999999999999999999998864 4444 55543    1221        379999999999999


Q ss_pred             cccchHHHhhcCCC
Q psy9486         140 GHLTKSLSSRFNLR  153 (165)
Q Consensus       140 s~l~~~l~~~~gl~  153 (165)
                      |.+.+.    +|+.
T Consensus       166 S~VR~~----lg~~  175 (499)
T 2qa2_A          166 STVRKA----AGFD  175 (499)
T ss_dssp             CHHHHH----TTCC
T ss_pred             cHHHHH----cCCC
Confidence            988666    5654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.34  E-value=1.3e-06  Score=76.25  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .++.+++..+.+.|.+.|++.|++|+.+++|+++..+ ++.|+ |.+.+    .+|+        .+++|++||+|+|++
T Consensus        99 ~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~----~~g~--------~~~~a~~vVgADG~~  164 (500)
T 2qa1_A           99 AAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDD-GAGVT-VEVRG----PEGK--------HTLRAAYLVGCDGGR  164 (500)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEE-TTEEE-EEEEE----TTEE--------EEEEESEEEECCCTT
T ss_pred             ceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEc-CCeEE-EEEEc----CCCC--------EEEEeCEEEECCCcc
Confidence            3689999999999999999999999999999999886 44443 55543    1120        279999999999999


Q ss_pred             cccchHHHhhcCCC
Q psy9486         140 GHLTKSLSSRFNLR  153 (165)
Q Consensus       140 s~l~~~l~~~~gl~  153 (165)
                      |.+.+.    +|+.
T Consensus       165 S~VR~~----lg~~  174 (500)
T 2qa1_A          165 SSVRKA----AGFD  174 (500)
T ss_dssp             CHHHHH----TTCC
T ss_pred             hHHHHH----cCCC
Confidence            988666    6654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.32  E-value=9.2e-07  Score=78.05  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      +....+.+.|.+++++.||+|+++++|++|+.+++++|+||++.+    .+|+.       ..|+||.||+|+|.++.+ 
T Consensus       247 ~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~~-------~~i~A~~VVlAtGg~s~~-  314 (566)
T 1qo8_A          247 SSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHG----KHTGY-------YMIGAKSVVLATGGYGMN-  314 (566)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEE----TTTEE-------EEEEEEEEEECCCCCTTC-
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEe----CCCcE-------EEEEcCEEEEecCCcccC-
Confidence            346788999999999999999999999999986338999998864    23321       269999999999999988 


Q ss_pred             hHHHhhcC
Q psy9486         144 KSLSSRFN  151 (165)
Q Consensus       144 ~~l~~~~g  151 (165)
                      ++|.++|.
T Consensus       315 ~~~~~~~~  322 (566)
T 1qo8_A          315 KEMIAYYR  322 (566)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            66777764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.31  E-value=1.8e-06  Score=76.23  Aligned_cols=75  Identities=23%  Similarity=0.236  Sum_probs=60.2

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK  144 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~  144 (165)
                      ....+.+.|.+++++.||+|+++++|++|+.+++++|+||.+.+    .+|+.       ..|+|+.||+|+|.++.. +
T Consensus       253 ~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~~-------~~i~a~~VVlAtGg~~~n-~  320 (571)
T 1y0p_A          253 VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKG----MYKGY-------YWVKADAVILATGGFAKN-N  320 (571)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEE----TTTEE-------EEEECSEEEECCCCCTTC-H
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEe----CCCcE-------EEEECCeEEEeCCCcccC-H
Confidence            34688999999999999999999999999986348999998864    23321       269999999999999986 4


Q ss_pred             HHHhhcC
Q psy9486         145 SLSSRFN  151 (165)
Q Consensus       145 ~l~~~~g  151 (165)
                      ++.++|.
T Consensus       321 ~~~~~~~  327 (571)
T 1y0p_A          321 ERVAKLD  327 (571)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            5666553

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.30  E-value=2.2e-06  Score=71.72  Aligned_cols=69  Identities=14%  Similarity=0.078  Sum_probs=58.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+|.++|..|+++|.+.|++  ++|+++++|+++..+ ++.| .|.+.+               |.++.|++||+|+|.
T Consensus       119 ~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~a~~vV~AdG~  179 (407)
T 3rp8_A          119 SRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEED-ADGV-TVWFTD---------------GSSASGDLLIAADGS  179 (407)
T ss_dssp             SCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEE-TTEE-EEEETT---------------SCEEEESEEEECCCT
T ss_pred             CceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEec-CCcE-EEEEcC---------------CCEEeeCEEEECCCc
Confidence            447999999999999999988  899999999999886 4443 356654               458999999999999


Q ss_pred             CcccchHH
Q psy9486         139 HGHLTKSL  146 (165)
Q Consensus       139 ~s~l~~~l  146 (165)
                      +|.+.+.+
T Consensus       180 ~S~vr~~l  187 (407)
T 3rp8_A          180 HSALRPWV  187 (407)
T ss_dssp             TCSSHHHH
T ss_pred             ChHHHHHh
Confidence            99998775

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.29  E-value=3.5e-06  Score=72.14  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc--
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT--  143 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~--  143 (165)
                      ...+.+.|.+++++.||+|+++++|+++..+ +++|++|.+.+               |..++|+.||+|+|.+|.-.  
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~---------------G~~i~Ad~VVlAtGg~s~~~~g  196 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQT---------------GEVLETNHVVIAVGGKSVPQTG  196 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------CCEEECSCEEECCCCSSSGGGS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECC---------------CCEEECCEEEECCCCCcCCCCC
Confidence            5688899999999999999999999999986 68888998865               34699999999999998211  


Q ss_pred             -----hHHHhhcCCC
Q psy9486         144 -----KSLSSRFNLR  153 (165)
Q Consensus       144 -----~~l~~~~gl~  153 (165)
                           ..+.+++|+.
T Consensus       197 ~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          197 STGDGYAWAEKAGHT  211 (447)
T ss_dssp             CSSHHHHHHHHTTCC
T ss_pred             CCcHHHHHHHHCCCC
Confidence                 1444457765

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.29  E-value=1.6e-06  Score=73.48  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEc--------------CCCcEEEEEEccccccCCCCCCCCCCcCeE
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH--------------GDGSVKGIATGDVGIAKDGSPKDTFARGME  126 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~--------------~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~  126 (165)
                      ...++...+.+.|.+.|++.||+|+++++|++|..+              ++++|++|++.+               | +
T Consensus       175 ~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~---------------g-~  238 (448)
T 3axb_A          175 AGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSD---------------G-T  238 (448)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETT---------------S-C
T ss_pred             CeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCC---------------C-E
Confidence            445677899999999999999999999999999872              256788888865               3 6


Q ss_pred             E--EcCEEEEcccCCcccchHHHhhcCCCCCC
Q psy9486         127 L--HAKVTIFAEGCHGHLTKSLSSRFNLRGQC  156 (165)
Q Consensus       127 i--~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~  156 (165)
                      +  .|+.||+|+|+++   .++.+.+|+..+.
T Consensus       239 i~~~Ad~VV~AtG~~s---~~l~~~~g~~~~~  267 (448)
T 3axb_A          239 RVEVGEKLVVAAGVWS---NRLLNPLGIDTFS  267 (448)
T ss_dssp             EEEEEEEEEECCGGGH---HHHHGGGTCCCSE
T ss_pred             EeecCCEEEECCCcCH---HHHHHHcCCCCcc
Confidence            8  9999999999997   5566667764333

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.28  E-value=3.3e-06  Score=71.20  Aligned_cols=89  Identities=13%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             cEEEE--hHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCC----------------C--cEEEEEEccccccCCCCCCC
Q psy9486          61 NYVVR--LGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGD----------------G--SVKGIATGDVGIAKDGSPKD  119 (165)
Q Consensus        61 ~~~i~--r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~----------------g--~V~GV~~~~~g~~~~g~~~~  119 (165)
                      +|...  ...+.+.|.+++++ .|+++++++.|.+++.+++                +  +|.||.+.+.-+..+|..+.
T Consensus       152 ~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~  231 (344)
T 3jsk_A          152 DYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQS  231 (344)
T ss_dssp             SEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSS
T ss_pred             CeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCccc
Confidence            45444  46788999999998 6999999999999998642                3  89999886533334443211


Q ss_pred             CCCcCeEEEcCEEEEcccCCcccchHHHhhc
Q psy9486         120 TFARGMELHAKVTIFAEGCHGHLTKSLSSRF  150 (165)
Q Consensus       120 ~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~  150 (165)
                      ... ..+|+|++||+|+|..|.+.+.+.+++
T Consensus       232 ~~d-~~~i~Ak~VV~ATG~~s~v~~~~~~~l  261 (344)
T 3jsk_A          232 AMD-PNTINAPVIISTTGHDGPFGAFSVKRL  261 (344)
T ss_dssp             CCB-CEEEECSEEEECCCSSSSSSCHHHHHH
T ss_pred             ccC-ceEEEcCEEEECCCCCchhhHHHHHHH
Confidence            111 358999999999999999887777774

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.26  E-value=2e-06  Score=71.35  Aligned_cols=72  Identities=22%  Similarity=0.327  Sum_probs=59.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..++-..+.+.|.+.+++.|++|+++++|+++..+ ++++++|++.+               | +++|+.||+|+|.++ 
T Consensus       169 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~a~~vV~a~G~~s-  230 (405)
T 2gag_B          169 GIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTR---------------G-TIHAGKVALAGAGHS-  230 (405)
T ss_dssp             BBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETT---------------C-CEEEEEEEECCGGGH-
T ss_pred             ccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCC---------------c-eEECCEEEECCchhH-
Confidence            34566789999999999999999999999999886 67888898865               3 699999999999997 


Q ss_pred             cchHHHhhcCCC
Q psy9486         142 LTKSLSSRFNLR  153 (165)
Q Consensus       142 l~~~l~~~~gl~  153 (165)
                        ..+.+.+|+.
T Consensus       231 --~~l~~~~g~~  240 (405)
T 2gag_B          231 --SVLAEMAGFE  240 (405)
T ss_dssp             --HHHHHHHTCC
T ss_pred             --HHHHHHcCCC
Confidence              3444446654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.26  E-value=2.2e-06  Score=74.67  Aligned_cols=79  Identities=20%  Similarity=0.166  Sum_probs=61.1

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcE--EEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV--KGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE  136 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V--~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~  136 (165)
                      ...+.+++..|.+.|.++|++.|++|+++++|+++..++++++  +.|.+.+    .+|        ..+++|++||+|+
T Consensus       112 ~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~----~~~--------~~~i~a~~vV~Ad  179 (535)
T 3ihg_A          112 AGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAG----PDG--------EYDLRAGYLVGAD  179 (535)
T ss_dssp             CCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEE----TTE--------EEEEEEEEEEECC
T ss_pred             CcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEc----CCC--------eEEEEeCEEEECC
Confidence            4478899999999999999999999999999999988644322  2244433    111        1479999999999


Q ss_pred             cCCcccchHHHhhcCCC
Q psy9486         137 GCHGHLTKSLSSRFNLR  153 (165)
Q Consensus       137 G~~s~l~~~l~~~~gl~  153 (165)
                      |.+|.+.+.    +|+.
T Consensus       180 G~~S~vR~~----lgi~  192 (535)
T 3ihg_A          180 GNRSLVRES----LGIG  192 (535)
T ss_dssp             CTTCHHHHH----TTCC
T ss_pred             CCcchHHHH----cCCC
Confidence            999988766    5554

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.26  E-value=2.6e-06  Score=75.48  Aligned_cols=75  Identities=19%  Similarity=0.234  Sum_probs=60.3

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK  144 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~  144 (165)
                      ....+.+.|.+++++.||+|+++++|++|+.+++++|+||++.+    .+|+.       ..|.||.||+|+|.++.. +
T Consensus       253 ~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~----~~G~~-------~~i~A~~VVlAtGg~~~~-~  320 (572)
T 1d4d_A          253 VGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKG----EYTGY-------YVIKADAVVIAAGGFAKN-N  320 (572)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEE----TTTEE-------EEEECSEEEECCCCCTTC-H
T ss_pred             CHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEe----CCCcE-------EEEEcCEEEEeCCCCccC-H
Confidence            35678899999999999999999999999986338999998864    23321       269999999999999987 5


Q ss_pred             HHHhhcC
Q psy9486         145 SLSSRFN  151 (165)
Q Consensus       145 ~l~~~~g  151 (165)
                      ++.++|.
T Consensus       321 ~~~~~~~  327 (572)
T 1d4d_A          321 ERVSKYD  327 (572)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            6777774

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.25  E-value=3.2e-06  Score=70.20  Aligned_cols=65  Identities=23%  Similarity=0.233  Sum_probs=56.4

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.++|..|.+.|.+.+++.||+|+++++|+++..  ++   .|.+.+               |.+++||.||+|+|.+|
T Consensus       101 ~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~---------------g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          101 WRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQT---------------GEVLEADLIVGADGVGS  160 (379)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETT---------------SCEEECSEEEECCCTTC
T ss_pred             eEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECC---------------CCEEEcCEEEECCCccH
Confidence            69999999999999999999999999999999965  34   455654               35799999999999999


Q ss_pred             ccchH
Q psy9486         141 HLTKS  145 (165)
Q Consensus       141 ~l~~~  145 (165)
                      .+.+.
T Consensus       161 ~vr~~  165 (379)
T 3alj_A          161 KVRDS  165 (379)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88666

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.24  E-value=4.3e-06  Score=76.94  Aligned_cols=74  Identities=19%  Similarity=0.319  Sum_probs=62.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...++...+.+.|.+.|++.||+|+++++|++|..+ ++++++|.+.+               | +++|+.||+|+|.++
T Consensus       145 ~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~---------------G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          145 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTAD---------------G-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------E-EEECSEEEECCGGGH
T ss_pred             CceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECC---------------c-EEECCEEEECCccch
Confidence            456688899999999999999999999999999886 67888898875               3 799999999999997


Q ss_pred             ccchHHHhhcCCCC
Q psy9486         141 HLTKSLSSRFNLRG  154 (165)
Q Consensus       141 ~l~~~l~~~~gl~~  154 (165)
                         ..+.+.+|+..
T Consensus       208 ---~~l~~~~g~~~  218 (830)
T 1pj5_A          208 ---AKIGAMIGMAV  218 (830)
T ss_dssp             ---HHHHHTTTCCC
T ss_pred             ---HHHHHHhCCCc
Confidence               55666666643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.24  E-value=9.4e-07  Score=78.51  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=60.8

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcC-eEEEcCEEEEccc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEG  137 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g-~~i~Ak~VI~A~G  137 (165)
                      ..++.+.+..+.+.|.+.|++.||+|+.+++|+++..++ +.|+ |.+..    .+         | .+++|++||+|+|
T Consensus       140 ~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~-~~v~-v~~~~----~~---------G~~~~~a~~vV~ADG  204 (570)
T 3fmw_A          140 PYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDA-EAVE-VTVAG----PS---------GPYPVRARYGVGCDG  204 (570)
T ss_dssp             CSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCS-SCEE-EEEEE----TT---------EEEEEEESEEEECSC
T ss_pred             CeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CeEE-EEEEe----CC---------CcEEEEeCEEEEcCC
Confidence            347899999999999999999999999999999998763 4433 55521    11         3 4799999999999


Q ss_pred             CCcccchHHHhhcCCC
Q psy9486         138 CHGHLTKSLSSRFNLR  153 (165)
Q Consensus       138 ~~s~l~~~l~~~~gl~  153 (165)
                      .+|.+.+.    +|+.
T Consensus       205 ~~S~vR~~----lGi~  216 (570)
T 3fmw_A          205 GRSTVRRL----AADR  216 (570)
T ss_dssp             SSCHHHHH----TTCC
T ss_pred             CCchHHHH----cCCC
Confidence            99988666    6664

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.23  E-value=5.1e-06  Score=69.10  Aligned_cols=71  Identities=17%  Similarity=0.152  Sum_probs=56.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++...+.+.|.+.|++.|++|+++++|++|..+ ++.|. |.+.+                .+++|+.||+|+|+++
T Consensus       147 ~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~-v~t~~----------------g~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          147 GGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD-ADGVS-VTTDR----------------GTYRAGKVVLACGPYT  208 (397)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEEE-EEESS----------------CEEEEEEEEECCGGGH
T ss_pred             CCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeEE-EEECC----------------CEEEcCEEEEcCCcCh
Confidence            446788889999999999999999999999999886 45443 66543                3799999999999985


Q ss_pred             ccchHHHhhcCC
Q psy9486         141 HLTKSLSSRFNL  152 (165)
Q Consensus       141 ~l~~~l~~~~gl  152 (165)
                         ..+.+.+|+
T Consensus       209 ---~~l~~~~g~  217 (397)
T 2oln_A          209 ---NDLLEPLGA  217 (397)
T ss_dssp             ---HHHHGGGTC
T ss_pred             ---HHHhhhcCC
Confidence               345455664

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.22  E-value=2.9e-06  Score=70.52  Aligned_cols=97  Identities=16%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             ceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC
Q psy9486          35 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD  114 (165)
Q Consensus        35 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~  114 (165)
                      ..+.+........+++...  .....++.+.+..+.+.|.+.+.+.|++|+++++|+++..++++. +.|.+.+     +
T Consensus        73 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~-~~v~~~~-----~  144 (394)
T 1k0i_A           73 EGVEIAFAGQRRRIDLKRL--SGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER-PYVTFER-----D  144 (394)
T ss_dssp             SCEEEEETTEEEEECHHHH--HTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS-CEEEEEE-----T
T ss_pred             ceEEEEECCceEEeccccc--cCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCc-eEEEEec-----C
Confidence            3455544444444444210  012347889999999999999999999999999999998752233 3465522     1


Q ss_pred             CCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486         115 GSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus       115 g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      |+.       .+++||+||+|+|.+|.+.+.+
T Consensus       145 g~~-------~~~~a~~vV~AdG~~S~vr~~l  169 (394)
T 1k0i_A          145 GER-------LRLDCDYIAGCDGFHGISRQSI  169 (394)
T ss_dssp             TEE-------EEEECSEEEECCCTTCSTGGGS
T ss_pred             CcE-------EEEEeCEEEECCCCCcHHHHhc
Confidence            211       1699999999999999987763

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.22  E-value=2.5e-06  Score=70.23  Aligned_cols=71  Identities=23%  Similarity=0.252  Sum_probs=58.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..++...+.+.|.+.+++.|++|+++++|+++..+ ++.+ +|.+.+               | .++|+.||+|+|.++ 
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~---------------g-~~~a~~vV~A~G~~s-  219 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPS---------------G-DVWANHVVVASGVWS-  219 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETT---------------E-EEEEEEEEECCGGGT-
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCC---------------c-eEEcCEEEECCChhH-
Confidence            45677899999999999999999999999999875 5666 787764               3 799999999999997 


Q ss_pred             cchHHHhhcCCC
Q psy9486         142 LTKSLSSRFNLR  153 (165)
Q Consensus       142 l~~~l~~~~gl~  153 (165)
                        ..+.+.+++.
T Consensus       220 --~~l~~~~~~~  229 (382)
T 1ryi_A          220 --GMFFKQLGLN  229 (382)
T ss_dssp             --HHHHHHTTCC
T ss_pred             --HHHHHhcCCC
Confidence              3455556653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.11  E-value=1.1e-05  Score=71.67  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=60.8

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK  144 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~  144 (165)
                      ....+.+.|.+.+++.|++|+++++|+++..+ ++++++|.+.+               |.++.|+.||+|+|.++.-.-
T Consensus       218 ~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~---------------G~~i~Ad~VVlA~G~~s~~~~  281 (549)
T 3nlc_A          218 KLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSN---------------GEEIKSRHVVLAVGHSARDTF  281 (549)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETT---------------SCEEECSCEEECCCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECC---------------CCEEECCEEEECCCCChhhHH
Confidence            45678888999999999999999999999986 67899999875               457999999999999985433


Q ss_pred             HHHhhcCCC
Q psy9486         145 SLSSRFNLR  153 (165)
Q Consensus       145 ~l~~~~gl~  153 (165)
                      ++.+..|+.
T Consensus       282 ~~l~~~Gi~  290 (549)
T 3nlc_A          282 EMLHERGVY  290 (549)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCC
Confidence            456667765

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.11  E-value=8.1e-06  Score=69.88  Aligned_cols=60  Identities=12%  Similarity=0.132  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|++.++++|++|+++++|++|..+ +++++||++.+               |.++.||.||.+.+.+..+
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~---------------g~~~~ad~VV~~a~~~~~~  280 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLED---------------GRRFLTQAVASNADVVHTY  280 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------SCEEECSCEEECCC-----
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecC---------------CcEEEcCEEEECCCHHHHH
Confidence            468888999999999999999999999996 79999999986               5789999999998877654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.10  E-value=2.8e-06  Score=71.60  Aligned_cols=73  Identities=19%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCcee---------EEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCE
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPAS---------EVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKV  131 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~---------~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~  131 (165)
                      ...++...+.++|.+.|++.|++|+++++|+         ++..+ ++++ +|++.+               | .++|+.
T Consensus       166 ~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~---------------g-~i~a~~  227 (405)
T 3c4n_A          166 ALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHET---------------R-QIRAGV  227 (405)
T ss_dssp             CEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCC---------------E-EEEEEE
T ss_pred             CEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECC---------------c-EEECCE
Confidence            4567888999999999999999999999999         88764 4555 676653               3 799999


Q ss_pred             EEEcccCCcccchHHHh-hcCCCC
Q psy9486         132 TIFAEGCHGHLTKSLSS-RFNLRG  154 (165)
Q Consensus       132 VI~A~G~~s~l~~~l~~-~~gl~~  154 (165)
                      ||+|+|.++   ..+.+ .+|+..
T Consensus       228 VV~A~G~~s---~~l~~~~~g~~~  248 (405)
T 3c4n_A          228 IIVAAGAAG---PALVEQGLGLHT  248 (405)
T ss_dssp             EEECCGGGH---HHHHHHHHCCCC
T ss_pred             EEECCCccH---HHHHHHhcCCCC
Confidence            999999997   34444 466543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.10  E-value=8e-06  Score=72.25  Aligned_cols=77  Identities=17%  Similarity=0.157  Sum_probs=62.8

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++-..+...|++.|++.|++|+++++|+++..+ +++|+||++.+.   .+|+       +.+++|+.||.|+|.|+  
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~---~tg~-------~~~i~A~~VV~AaG~~s--  232 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDR---LTDT-------THTIYAKKVVNAAGPWV--  232 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEET---TTCC-------EEEEEEEEEEECCGGGH--
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEc---CCCc-------eEEEECCEEEECCCcch--
Confidence            5677899999999999999999999999999986 788999988751   1232       24799999999999997  


Q ss_pred             chHHHhhcCCC
Q psy9486         143 TKSLSSRFNLR  153 (165)
Q Consensus       143 ~~~l~~~~gl~  153 (165)
                       .++.+..|..
T Consensus       233 -~~l~~~~g~~  242 (561)
T 3da1_A          233 -DTLREKDRSK  242 (561)
T ss_dssp             -HHHHHTTTCC
T ss_pred             -HHHHHhcCCC
Confidence             5566556654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.09  E-value=1.3e-05  Score=65.97  Aligned_cols=69  Identities=22%  Similarity=0.193  Sum_probs=55.9

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..++...+.+.|.+.|++.|++|+++++|+++..+ ++. +.|++.+                .+++|+.||+|+|.++ 
T Consensus       145 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~----------------g~~~a~~vV~A~G~~~-  205 (389)
T 2gf3_A          145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDS-VKIETAN----------------GSYTADKLIVSMGAWN-  205 (389)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSC-EEEEETT----------------EEEEEEEEEECCGGGH-
T ss_pred             cEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEec-CCe-EEEEeCC----------------CEEEeCEEEEecCccH-
Confidence            45677899999999999999999999999999886 344 3466653                3799999999999986 


Q ss_pred             cchHHHhhcC
Q psy9486         142 LTKSLSSRFN  151 (165)
Q Consensus       142 l~~~l~~~~g  151 (165)
                        ..+.+.++
T Consensus       206 --~~l~~~~g  213 (389)
T 2gf3_A          206 --SKLLSKLN  213 (389)
T ss_dssp             --HHHGGGGT
T ss_pred             --HHHhhhhc
Confidence              45555566

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.08  E-value=2.3e-05  Score=63.15  Aligned_cols=77  Identities=18%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             CcEEE--EhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEcccc--cc----CCCCCCCCCCcCeEEEcC
Q psy9486          60 GNYVV--RLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVG--IA----KDGSPKDTFARGMELHAK  130 (165)
Q Consensus        60 ~~~~i--~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g--~~----~~g~~~~~~~~g~~i~Ak  130 (165)
                      ++|.+  .+..+...|.+++.+ .||++++++.|+++..+ +++|.||.+.+.-  .+    .+|+.       .++.||
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~-------~~i~ad  181 (284)
T 1rp0_A          110 DTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDP-------NVMEAK  181 (284)
T ss_dssp             SSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCC-------EEEEEE
T ss_pred             CCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCce-------EEEECC
Confidence            34555  678899999999977 79999999999999886 6788898875200  00    11221       479999


Q ss_pred             EEEEcccCCcccch
Q psy9486         131 VTIFAEGCHGHLTK  144 (165)
Q Consensus       131 ~VI~A~G~~s~l~~  144 (165)
                      .||+|+|..|.+..
T Consensus       182 ~VV~AtG~~s~~~~  195 (284)
T 1rp0_A          182 IVVSSCGHDGPFGA  195 (284)
T ss_dssp             EEEECCCSSSTTTT
T ss_pred             EEEECCCCchHHHH
Confidence            99999999887754

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.02  E-value=1.3e-05  Score=62.64  Aligned_cols=60  Identities=17%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             EhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          65 RLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +|..+.++|.+.+++. |++++ .++|+++..+ ++++++|.+.+               |.+++|+.||+|+|.++.
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~-~~~v~~v~~~~---------------g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLLE-GNRVVGVRTWE---------------GPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETT---------------SCCEECSEEEECCTTCSS
T ss_pred             CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe-CCEEEEEEECC---------------CCEEECCEEEECCCCChh
Confidence            6889999999999997 99999 4799999886 67888888865               347999999999999765

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.00  E-value=1.6e-05  Score=70.41  Aligned_cols=75  Identities=17%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      ++-..+...|++.|++.|++|+++++|+++..+ +++|+||++.+.   .+|+       +.+|+|+.||+|+|+|+   
T Consensus       185 v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~---~tg~-------~~~i~A~~VV~AaG~ws---  250 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDL---LTDE-------VIEIKAKLVINTSGPWV---  250 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEET---TTCC-------EEEEEBSCEEECCGGGH---
T ss_pred             EchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEc---CCCC-------EEEEEcCEEEECCChhH---
Confidence            566788899999999999999999999999986 678899987531   0121       23799999999999996   


Q ss_pred             hHHHhhcCC
Q psy9486         144 KSLSSRFNL  152 (165)
Q Consensus       144 ~~l~~~~gl  152 (165)
                      .++.+..+.
T Consensus       251 ~~l~~~~g~  259 (571)
T 2rgh_A          251 DKVRNLNFT  259 (571)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHHHhhcc
Confidence            555555554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.99  E-value=2.2e-05  Score=70.53  Aligned_cols=64  Identities=14%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++...+.+.|.+.|++.|++|+++++|++|..+ +++ ++|++.+               |.++.|+.||+|+|.++
T Consensus       411 ~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~---------------G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          411 GGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDC-WLLNFAG---------------DQQATHSVVVLANGHQI  473 (676)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTE-EEEEETT---------------SCEEEESEEEECCGGGG
T ss_pred             CeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCe-EEEEECC---------------CCEEECCEEEECCCcch
Confidence            456788899999999999999999999999999986 455 4677764               35799999999999997


Q ss_pred             c
Q psy9486         141 H  141 (165)
Q Consensus       141 ~  141 (165)
                      .
T Consensus       474 ~  474 (676)
T 3ps9_A          474 S  474 (676)
T ss_dssp             G
T ss_pred             h
Confidence            4

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.97  E-value=3.7e-05  Score=62.99  Aligned_cols=62  Identities=24%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...++...+.+.|.+.|++.|++|+++++|+++..+ ++. +.|++.+               | +++|+.||+|+|+++
T Consensus       143 ~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~---------------g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          143 SGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD-DDG-VTIETAD---------------G-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSS-EEEEESS---------------C-EEEEEEEEECCGGGG
T ss_pred             CcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc-CCE-EEEEECC---------------C-eEEcCEEEEcCCccH
Confidence            446778899999999999999999999999999886 344 3576654               3 699999999999987

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.94  E-value=2.5e-05  Score=65.28  Aligned_cols=90  Identities=14%  Similarity=0.235  Sum_probs=62.8

Q ss_pred             CcEEEE--hHHHHHHHHHHHHHC-CCEEecCCceeEEEEcC--C-C--cEEEEEEccccccCCCCCCCCCCcCeEEEc--
Q psy9486          60 GNYVVR--LGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHG--D-G--SVKGIATGDVGIAKDGSPKDTFARGMELHA--  129 (165)
Q Consensus        60 ~~~~i~--r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~--~-g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A--  129 (165)
                      +.|.+.  ...+...|.+++.+. ||++++++.|.+++.++  + +  +|+||.+.+..++.+|...... .+..|.|  
T Consensus       137 g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~-d~~~I~A~G  215 (326)
T 2gjc_A          137 GDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCM-DPNVIELAG  215 (326)
T ss_dssp             SSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCC-CCEEEEESC
T ss_pred             CCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceecc-CceEEEEee
Confidence            445544  467888999999985 99999999999999863  3 5  9999988754334455211111 1357999  


Q ss_pred             -------------CEEEEcccCCcccchHHHhhc
Q psy9486         130 -------------KVTIFAEGCHGHLTKSLSSRF  150 (165)
Q Consensus       130 -------------k~VI~A~G~~s~l~~~l~~~~  150 (165)
                                   ++||+|+|..+.+...+.+++
T Consensus       216 ~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~~~~  249 (326)
T 2gjc_A          216 YKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRI  249 (326)
T ss_dssp             CCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHH
T ss_pred             ccccccccccccCCEEEECcCCCchHHHHHHhhc
Confidence                         999999999999887766653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.92  E-value=2e-05  Score=70.67  Aligned_cols=84  Identities=10%  Similarity=0.065  Sum_probs=61.4

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF  134 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~  134 (165)
                      ...+.+++..+.++|.+.|++.|+  +|+.+++|+++..+++  +..+.|.+.+.+...+|..       .+++|++||+
T Consensus       133 ~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~-------~~i~a~~vVg  205 (639)
T 2dkh_A          133 FPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQI-------ETVQARYVVG  205 (639)
T ss_dssp             SCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCE-------EEEEEEEEEE
T ss_pred             CceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCe-------EEEEeCEEEE
Confidence            346789999999999999999988  9999999999988642  2223455432000012321       4799999999


Q ss_pred             cccCCcccchHHHhhcCCC
Q psy9486         135 AEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus       135 A~G~~s~l~~~l~~~~gl~  153 (165)
                      |+|++|.+.+.    +|+.
T Consensus       206 ADG~~S~vR~~----lg~~  220 (639)
T 2dkh_A          206 CDGARSNVRRA----IGRQ  220 (639)
T ss_dssp             CCCTTCHHHHH----TTCC
T ss_pred             CCCcchHHHHH----hCCC
Confidence            99999988666    5654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.92  E-value=2.5e-05  Score=69.56  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++++.|++|+.+++++|+||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~---~~g~~-------~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCI---ETGEV-------VYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEET---TTCCE-------EEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCeE-------EEEEcCEEEECCCCCccc
Confidence            5788899999999999999999999999854689999987531   13322       269999999999999854

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.90  E-value=3.2e-05  Score=63.65  Aligned_cols=69  Identities=14%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ...+.+.|..|.+.|.+.   ++..|.++++++++...+++.| .|.+.+               |.+++||+||.|+|.
T Consensus       104 ~~~~~i~R~~L~~~L~~~---~~~~v~~~~~v~~~~~~~~~~v-~v~~~d---------------G~~~~adlvVgADG~  164 (412)
T 4hb9_A          104 EQRLSISRTELKEILNKG---LANTIQWNKTFVRYEHIENGGI-KIFFAD---------------GSHENVDVLVGADGS  164 (412)
T ss_dssp             -CEEEEEHHHHHHHHHTT---CTTTEECSCCEEEEEECTTSCE-EEEETT---------------SCEEEESEEEECCCT
T ss_pred             ccceEeeHHHHHHHHHhh---ccceEEEEEEEEeeeEcCCCeE-EEEECC---------------CCEEEeeEEEECCCC
Confidence            345789999999998764   4567999999999987656654 366654               568999999999999


Q ss_pred             CcccchHH
Q psy9486         139 HGHLTKSL  146 (165)
Q Consensus       139 ~s~l~~~l  146 (165)
                      +|.+.+++
T Consensus       165 ~S~vR~~l  172 (412)
T 4hb9_A          165 NSKVRKQY  172 (412)
T ss_dssp             TCHHHHHH
T ss_pred             CcchHHHh
Confidence            99997774

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.86  E-value=7.4e-05  Score=64.79  Aligned_cols=72  Identities=15%  Similarity=0.090  Sum_probs=57.1

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++...+...|++.|++.|++|+++++|+++..+ + .+++|.+.+.   .+|+.       .+++|+.||+|+|.|+  
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~---~~G~~-------~~i~A~~VV~AtG~~s--  210 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDI---DTGKK-------YSWQARGLVNATGPWV--  210 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEET---TTCCE-------EEEEESCEEECCGGGH--
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEEC---CCCCE-------EEEECCEEEECCChhH--
Confidence            4688999999999999999999999999999885 3 6788888531   12211       2799999999999997  


Q ss_pred             chHHHhh
Q psy9486         143 TKSLSSR  149 (165)
Q Consensus       143 ~~~l~~~  149 (165)
                       ..+.+.
T Consensus       211 -~~l~~~  216 (501)
T 2qcu_A          211 -KQFFDD  216 (501)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHH
Confidence             455443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.84  E-value=4.8e-05  Score=68.60  Aligned_cols=64  Identities=14%  Similarity=0.017  Sum_probs=53.3

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCe-EEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~-~i~Ak~VI~A~G~~  139 (165)
                      +..++...+.+.|.+.|++.|++|+++++|++|..+ ++. ++|++.+               |. ++.|+.||+|+|.+
T Consensus       406 ~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~---------------G~~~i~Ad~VVlAtG~~  468 (689)
T 3pvc_A          406 GGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQ-WQLTFGQ---------------SQAAKHHATVILATGHR  468 (689)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSS-EEEEEC----------------CCCCEEESEEEECCGGG
T ss_pred             CeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCe-EEEEeCC---------------CcEEEECCEEEECCCcc
Confidence            345678899999999999999999999999999986 455 4677764               34 69999999999999


Q ss_pred             cc
Q psy9486         140 GH  141 (165)
Q Consensus       140 s~  141 (165)
                      +.
T Consensus       469 s~  470 (689)
T 3pvc_A          469 LP  470 (689)
T ss_dssp             TT
T ss_pred             hh
Confidence            74

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.80  E-value=3.9e-05  Score=69.01  Aligned_cols=65  Identities=20%  Similarity=0.280  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.||+|++++.|.+|+.+ +++|+||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~G~~-------~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCI---EDGTI-------HRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEET---TTCCE-------EEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCccccc
Confidence            478889999999999999999999999986 789999987531   13432       369999999999999854

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.80  E-value=7.2e-05  Score=63.93  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=56.3

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc--
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL--  142 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l--  142 (165)
                      ++..+.+.|.+.+++.||+|+++++|+++..+ ++. +.|.+.+               | +++||.||+|+|.+|.-  
T Consensus       130 ~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~---------------g-~i~ad~VIlAtG~~S~p~~  191 (417)
T 3v76_A          130 SAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASG-FRVTTSA---------------G-TVDAASLVVASGGKSIPKM  191 (417)
T ss_dssp             CHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETT---------------E-EEEESEEEECCCCSSCGGG
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECC---------------c-EEEeeEEEECCCCccCCCC
Confidence            46689999999999999999999999999886 343 5677765               3 89999999999999831  


Q ss_pred             -----chHHHhhcCCC
Q psy9486         143 -----TKSLSSRFNLR  153 (165)
Q Consensus       143 -----~~~l~~~~gl~  153 (165)
                           ..++.+++|+.
T Consensus       192 gs~g~g~~la~~~G~~  207 (417)
T 3v76_A          192 GATGLAYRIAEQFGLP  207 (417)
T ss_dssp             TCCCHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHHCCCC
Confidence                 13455557764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.77  E-value=5.2e-05  Score=66.32  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..+.+.|++.+++.|++|+++++|++|..+++|+++||++.+               |.++.|+.||.|.|..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~---------------G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSD---------------GEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETT---------------SCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECC---------------CcEEECCEEEECCCcc
Confidence            578889999999999999999999999994478999999975               4579999999999987

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.77  E-value=7.6e-05  Score=62.55  Aligned_cols=74  Identities=22%  Similarity=0.321  Sum_probs=56.7

Q ss_pred             CcEEEEhHHHHHHHHHHHHH-CC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          60 GNYVVRLGHVVKWLGEQAEA-MG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~-~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+.++|..|+++|.+.+++ .| ++|+++++|+++.. +++ |. |.+.+.   .+|+.       .+++|++||+|+|
T Consensus       100 ~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v~-v~~~~~---~~g~~-------~~~~ad~vV~AdG  166 (410)
T 3c96_A          100 PQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-RV-LIGARD---GHGKP-------QALGADVLVGADG  166 (410)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-EE-EEEEEE---TTSCE-------EEEEESEEEECCC
T ss_pred             CeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-cE-EEEecC---CCCCc-------eEEecCEEEECCC
Confidence            36899999999999999987 47 58999999999987 444 33 444320   12321       4799999999999


Q ss_pred             CCcccchHH
Q psy9486         138 CHGHLTKSL  146 (165)
Q Consensus       138 ~~s~l~~~l  146 (165)
                      .+|.+.+.+
T Consensus       167 ~~S~vR~~l  175 (410)
T 3c96_A          167 IHSAVRAHL  175 (410)
T ss_dssp             TTCHHHHHH
T ss_pred             ccchhHHHh
Confidence            999997764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.77  E-value=5.8e-05  Score=68.30  Aligned_cols=65  Identities=23%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+...|.+++++.||+|++++.|.+|+.+ +++|+||.+.+.   .+|+.       ..|+|+.||+|+|.++.+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~G~~-------~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDL---VTGDI-------IAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEET---TTCCE-------EEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEEC---CCCcE-------EEEEcCEEEEccCcchhh
Confidence            368889999999999999999999999986 689999977531   13322       259999999999999854

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.76  E-value=6.7e-05  Score=62.60  Aligned_cols=58  Identities=24%  Similarity=0.278  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++||.+..                .++.||.||+|+|.+..
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~g----------------~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIADD----------------RIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT----------------EEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEECC----------------EEEECCEEEECCCHHHH
Confidence            457888999999999999999999999986 68888998852                58999999999998754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.68  E-value=5.4e-05  Score=63.23  Aligned_cols=67  Identities=12%  Similarity=-0.020  Sum_probs=54.1

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..+.++|..|.++|.+.+.+  ++|+++++|+++..+ ++.+ .|.+.+               |.+++||+||+|+|.+
T Consensus       121 ~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g~~~~ad~vV~AdG~~  181 (398)
T 2xdo_A          121 DNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPG-KKKW-TLTFEN---------------KPSETADLVILANGGM  181 (398)
T ss_dssp             SCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEEC-SSSE-EEEETT---------------SCCEEESEEEECSCTT
T ss_pred             CCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEEC-CCEE-EEEECC---------------CcEEecCEEEECCCcc
Confidence            34679999999999988764  689999999999886 3444 366654               3479999999999999


Q ss_pred             cccchH
Q psy9486         140 GHLTKS  145 (165)
Q Consensus       140 s~l~~~  145 (165)
                      |.+.+.
T Consensus       182 S~vR~~  187 (398)
T 2xdo_A          182 SKVRKF  187 (398)
T ss_dssp             CSCCTT
T ss_pred             hhHHhh
Confidence            999776

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.67  E-value=0.00013  Score=64.00  Aligned_cols=72  Identities=14%  Similarity=0.206  Sum_probs=56.0

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..++.+.+..+.++|.+.|++.   |+++++|+++..+ ++.|+ |.+.+.   .+|+.       .+++|++||+|+|+
T Consensus       130 ~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~-~~~v~-v~~~~~---~~G~~-------~~i~a~~vVgADG~  194 (549)
T 2r0c_A          130 EPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQR-DDHVR-ATITDL---RTGAT-------RAVHARYLVACDGA  194 (549)
T ss_dssp             SCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEEC-SSCEE-EEEEET---TTCCE-------EEEEEEEEEECCCT
T ss_pred             CcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEe-CCEEE-EEEEEC---CCCCE-------EEEEeCEEEECCCC
Confidence            3468999999999999999988   9999999999886 44454 444320   12321       47999999999999


Q ss_pred             CcccchH
Q psy9486         139 HGHLTKS  145 (165)
Q Consensus       139 ~s~l~~~  145 (165)
                      +|.+.+.
T Consensus       195 ~S~vR~~  201 (549)
T 2r0c_A          195 SSPTRKA  201 (549)
T ss_dssp             TCHHHHH
T ss_pred             CcHHHHH
Confidence            9988766

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.67  E-value=0.00015  Score=60.41  Aligned_cols=67  Identities=16%  Similarity=0.034  Sum_probs=54.2

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+.+..+.+.|.+.+  .|++|+++++|+++..+ ++.+. |.+.+               |.+++|++||+|+|.+|.
T Consensus        94 ~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           94 RFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQD-SETVQ-MRFSD---------------GTKAEANWVIGADGGASV  154 (397)
T ss_dssp             CEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEEC-SSCEE-EEETT---------------SCEEEESEEEECCCTTCH
T ss_pred             cccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEec-CCEEE-EEECC---------------CCEEECCEEEECCCcchh
Confidence            3578899999998876  59999999999999886 44443 66654               357999999999999999


Q ss_pred             cchHHH
Q psy9486         142 LTKSLS  147 (165)
Q Consensus       142 l~~~l~  147 (165)
                      +.+.+.
T Consensus       155 vr~~~~  160 (397)
T 2vou_A          155 VRKRLL  160 (397)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            877754

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.67  E-value=0.00013  Score=54.13  Aligned_cols=67  Identities=21%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      +....+.++|.+.+++.|++++++ +|+++..++ +. +.|.+.+               | ++.|+.||+|+|.++.+.
T Consensus        53 ~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~-~~-~~v~~~~---------------g-~i~ad~vI~A~G~~~~~~  113 (180)
T 2ywl_A           53 PSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMG-GV-FEVETEE---------------G-VEKAERLLLCTHKDPTLP  113 (180)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECS-SS-EEEECSS---------------C-EEEEEEEEECCTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcC-CE-EEEEECC---------------C-EEEECEEEECCCCCCCcc
Confidence            456789999999999999999999 999998753 33 3466654               4 799999999999998553


Q ss_pred             hHHHhhcCCC
Q psy9486         144 KSLSSRFNLR  153 (165)
Q Consensus       144 ~~l~~~~gl~  153 (165)
                      +.    +|+.
T Consensus       114 ~~----~g~~  119 (180)
T 2ywl_A          114 SL----LGLT  119 (180)
T ss_dssp             HH----HTCC
T ss_pred             cc----CCCC
Confidence            43    5654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.62  E-value=0.00016  Score=65.42  Aligned_cols=62  Identities=15%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.++|..+.+.|.+.+++ .|++|+ .+.|++|..+ +++|+||.+.+               |..+.|+.||+|+|.++
T Consensus       118 ~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~d---------------G~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          118 AQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNL---------------GVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETT---------------SCEEECSEEEECCTTCB
T ss_pred             hhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECC---------------CcEEEeCEEEEccCCCc
Confidence            578899999999999998 699996 5799999886 68899999875               45899999999999875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.60  E-value=0.00031  Score=58.88  Aligned_cols=70  Identities=16%  Similarity=0.345  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.++|.+..++.||+|++++.|+++..+ ++++.+|.+.+               |.++.||.||+|+|.....  .+
T Consensus       184 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d---------------G~~i~aD~Vv~a~G~~p~~--~l  245 (404)
T 3fg2_P          184 PEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSD---------------GNTLPCDLVVVGVGVIPNV--EI  245 (404)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------SCEEECSEEEECCCEEECC--HH
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECcCCccCH--HH
Confidence            356778888999999999999999999875 68888999876               4689999999999987754  45


Q ss_pred             HhhcCCCC
Q psy9486         147 SSRFNLRG  154 (165)
Q Consensus       147 ~~~~gl~~  154 (165)
                      .+..|+..
T Consensus       246 ~~~~gl~~  253 (404)
T 3fg2_P          246 AAAAGLPT  253 (404)
T ss_dssp             HHHTTCCB
T ss_pred             HHhCCCCC
Confidence            66677753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.60  E-value=0.00015  Score=65.67  Aligned_cols=63  Identities=14%  Similarity=0.162  Sum_probs=54.4

Q ss_pred             EEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.+++..+.+.|.+.+++ .|++|+ .+.|+++..+ +++|+||.+.+               |..|.|+.||+|+|.++
T Consensus       119 ~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~d---------------G~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          119 AQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQM---------------GLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETT---------------SEEEEEEEEEECCSTTT
T ss_pred             hhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECC---------------CCEEECCEEEEcCCCCc
Confidence            578899999999999998 799996 5699999885 68899999875               46899999999999986


Q ss_pred             c
Q psy9486         141 H  141 (165)
Q Consensus       141 ~  141 (165)
                      .
T Consensus       182 ~  182 (651)
T 3ces_A          182 D  182 (651)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.60  E-value=0.00012  Score=65.42  Aligned_cols=65  Identities=18%  Similarity=0.368  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+++++.| |+|++++.|.+|+.+ +++|+||.+.+.   .+|+.       ..|+|+.||+|+|.+|.+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~---~~G~~-------~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEET---TTTEE-------EEEECSCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCCccc
Confidence            478889999999999 999999999999986 689999876431   12321       269999999999999866

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.59  E-value=0.00039  Score=58.42  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+++.+..++.||+|++++.|+++..+ ++++.+|++.+               |.++.||.||+|+|.....  .+
T Consensus       194 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~d---------------G~~i~aD~Vv~a~G~~p~~--~l  255 (415)
T 3lxd_A          194 EALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQD---------------GSVIPADIVIVGIGIVPCV--GA  255 (415)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEEESS---------------SCEEECSEEEECSCCEESC--HH
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEEeCC---------------CCEEEcCEEEECCCCccCh--HH
Confidence            456777888889999999999999999875 68888999876               4689999999999998754  45


Q ss_pred             HhhcCCCC
Q psy9486         147 SSRFNLRG  154 (165)
Q Consensus       147 ~~~~gl~~  154 (165)
                      .+..|+..
T Consensus       256 ~~~~gl~~  263 (415)
T 3lxd_A          256 LISAGASG  263 (415)
T ss_dssp             HHHTTCCC
T ss_pred             HHhCCCCc
Confidence            66677653

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.58  E-value=7.8e-05  Score=67.52  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             EEEhHHHHHHHHHHHHHC--CCEEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          63 VVRLGHVVKWLGEQAEAM--GVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~--Gv~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+....+.+.|.+++++.  ||+|++++.|.+|+.+++  |+|+||.+.+.   .+|+.       ..|+|+.||+|+|.
T Consensus       162 ~~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVLATGG  231 (662)
T 3gyx_A          162 MINGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNL---RANEV-------HIFKANAMVVACGG  231 (662)
T ss_dssp             EEEETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEES---SSSCE-------EEEECSEEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEc---CCCcE-------EEEEeCEEEECCCc
Confidence            344567888999999998  999999999999999743  39999977531   23432       36999999999999


Q ss_pred             Cccc
Q psy9486         139 HGHL  142 (165)
Q Consensus       139 ~s~l  142 (165)
                      .+.+
T Consensus       232 ~g~~  235 (662)
T 3gyx_A          232 AVNV  235 (662)
T ss_dssp             BCSS
T ss_pred             cccc
Confidence            8854

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.56  E-value=0.00016  Score=65.27  Aligned_cols=87  Identities=10%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             CCcEEEEhHHHHHHHHHHHHHCC---CEEecCCceeEEEEcC------CCcEEEEEEcccc-----------ccCCCCCC
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYHG------DGSVKGIATGDVG-----------IAKDGSPK  118 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~~G---v~i~~~~~v~~i~~~~------~g~V~GV~~~~~g-----------~~~~g~~~  118 (165)
                      ...+.+.|..+.++|.+.+++.|   ++|..++.|+++..++      ++.-+.|.+.+..           ...+|-..
T Consensus       111 ~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~  190 (665)
T 1pn0_A          111 YHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFR  190 (665)
T ss_dssp             SCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCC
T ss_pred             CeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEeccccccccccccccccccccc
Confidence            34688999999999999999988   9999999999998864      1111334333200           00001000


Q ss_pred             CCC----------------CcC--eEEEcCEEEEcccCCcccchH
Q psy9486         119 DTF----------------ARG--MELHAKVTIFAEGCHGHLTKS  145 (165)
Q Consensus       119 ~~~----------------~~g--~~i~Ak~VI~A~G~~s~l~~~  145 (165)
                      .++                ..|  .+++|++||.|+|++|.+.++
T Consensus       191 ~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~  235 (665)
T 1pn0_A          191 SNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRT  235 (665)
T ss_dssp             CHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHH
T ss_pred             ccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHh
Confidence            000                112  479999999999999998777

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.56  E-value=0.00027  Score=59.90  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=55.2

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcC---CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~---~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ++..+.+.|.+.+++.||+|+++++|+++..++   ++. +.|.+.+               + +++|+.||+|+|.++.
T Consensus       107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~---------------g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNS---------------T-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETT---------------E-EEEESEEEECCCCSSC
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECC---------------C-EEECCEEEECCCCccC
Confidence            577888999999999999999999999998751   233 4566654               3 7999999999999983


Q ss_pred             c-------chHHHhhcCCC
Q psy9486         142 L-------TKSLSSRFNLR  153 (165)
Q Consensus       142 l-------~~~l~~~~gl~  153 (165)
                      -       ..++.+++|+.
T Consensus       170 p~~g~~G~g~~la~~~G~~  188 (401)
T 2gqf_A          170 PGLGATPFGYQIAEQFGIP  188 (401)
T ss_dssp             GGGTCCSHHHHHHHHTTCC
T ss_pred             CCCCCChHHHHHHHHCCCC
Confidence            2       12445557764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.54  E-value=8e-05  Score=65.60  Aligned_cols=66  Identities=17%  Similarity=0.136  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCC------cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          67 GHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDG------SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        67 ~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g------~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..+.+.|.+++++ .||+|++++.|.+|+.++++      +|+||.+.+.   .+|+.       ..|.|+.||+|+|.+
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~---~~G~~-------~~i~A~~VVlAtGg~  207 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNR---NKETV-------ETCHAKAVVLATGGA  207 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEET---TTTEE-------EEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEc---CCCcE-------EEEEcCeEEECCCCc
Confidence            4567788999998 79999999999999984346      8999988641   12321       279999999999999


Q ss_pred             ccc
Q psy9486         140 GHL  142 (165)
Q Consensus       140 s~l  142 (165)
                      +.+
T Consensus       208 ~~~  210 (540)
T 1chu_A          208 SKV  210 (540)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            865

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.48  E-value=0.00024  Score=61.35  Aligned_cols=61  Identities=23%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ...+.+.|.+++++.|++|++++.| +++.+ +++|+||.+.+.              +.++.|+.||+|+|.++.+
T Consensus       118 g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~--------------~g~~~a~~VVlAtGg~~~~  178 (472)
T 2e5v_A          118 GREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEKR--------------GLVEDVDKLVLATGGYSYL  178 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETTT--------------EEECCCSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEeC--------------CCeEEeeeEEECCCCCccc
Confidence            4578889999998899999999999 99886 688999877531              1367899999999999865

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.47  E-value=0.00033  Score=63.43  Aligned_cols=63  Identities=14%  Similarity=0.188  Sum_probs=53.6

Q ss_pred             cEEEEhHHHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+.++|..+...|.+.+++ .|++|+.+ .|+++..+ +++|.||.+.+               |..+.|+.||+|+|.+
T Consensus       111 r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~---------------G~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A          111 RAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRS---------------GRAIQAKAAILACGTF  173 (641)
T ss_dssp             EEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETT---------------SCEEEEEEEEECCTTC
T ss_pred             hhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECC---------------CcEEEeCEEEECcCCC
Confidence            3578999999999999988 49999755 89999886 68899998875               4589999999999988


Q ss_pred             c
Q psy9486         140 G  140 (165)
Q Consensus       140 s  140 (165)
                      +
T Consensus       174 s  174 (641)
T 3cp8_A          174 L  174 (641)
T ss_dssp             B
T ss_pred             C
Confidence            4

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.45  E-value=0.00031  Score=56.43  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...++..+.++|.+.+++.|++++++++|+++..+ ++.+.+|.+.+               + ++.++.||+|+|.++
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~---------------g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           71 PYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHF-GERLRVVARDG---------------R-QWLARAVISATGTWG  132 (357)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTS---------------C-EEEEEEEEECCCSGG
T ss_pred             CCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCC---------------C-EEEeCEEEECCCCCC
Confidence            34578999999999999999999999999999886 45544466654               3 899999999999865

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.44  E-value=0.00023  Score=63.95  Aligned_cols=66  Identities=24%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHC-CC-EEecCCceeEEEEcCCC---cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          66 LGHVVKWLGEQAEAM-GV-EIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        66 r~~~d~~L~~~A~~~-Gv-~i~~~~~v~~i~~~~~g---~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      -..+.+.|.+.+++. || +|++++.|.+|+.+ ++   +|+||.+.+.   .+|+.       ..|+|+.||+|+|.++
T Consensus       150 g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~---~~g~~-------~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          150 GESYKPIIAEAAKMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSV---REPKF-------YVFKAKAVILATGGAT  218 (643)
T ss_dssp             ETTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEES---SSSCE-------EEEECSEEEECCCCBC
T ss_pred             cHHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEe---cCCcE-------EEEEcCEEEECCCccc
Confidence            345788899999988 99 99999999999986 45   9999976421   13321       3699999999999998


Q ss_pred             cc
Q psy9486         141 HL  142 (165)
Q Consensus       141 ~l  142 (165)
                      .+
T Consensus       219 ~~  220 (643)
T 1jnr_A          219 LL  220 (643)
T ss_dssp             SS
T ss_pred             cc
Confidence            64

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.43  E-value=0.00016  Score=62.91  Aligned_cols=73  Identities=18%  Similarity=0.012  Sum_probs=55.5

Q ss_pred             EEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.+++..+.+.|.+.+++.|++|+++++|+++..++ ++..++|.+.+.   .+|+.       .+++|+.||+|+|++|
T Consensus       161 ~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~---~~g~~-------~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          161 DHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPN---PPAQL-------ASYEFDVLISAAGGKF  230 (497)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESC---CCHHH-------HTCCBSEEEECCCTTC
T ss_pred             ccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEEC---CCCCE-------EEEEcCEEEECCCCCc
Confidence            468889999999999999999999999999998742 244456766320   01210       3589999999999999


Q ss_pred             ccch
Q psy9486         141 HLTK  144 (165)
Q Consensus       141 ~l~~  144 (165)
                      .+.+
T Consensus       231 ~~r~  234 (497)
T 2bry_A          231 VPEG  234 (497)
T ss_dssp             CCTT
T ss_pred             cccc
Confidence            8853

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.38  E-value=0.00044  Score=59.13  Aligned_cols=58  Identities=21%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..+.+.|++.+++.|++|+++++|++|..+. ++++++|++.                |.++.|+.||.|.|.++
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~----------------g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK----------------LGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET----------------TEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC----------------CeEEECCEEEECCCccc
Confidence            4788899999999999999999999998852 5788898874                35899999999999986

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.32  E-value=0.00037  Score=59.31  Aligned_cols=58  Identities=16%  Similarity=0.254  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+.+.|++.+++.|++|+++++|++|..+ ++++++|.+.                |.+++||.||.|.|.++.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~~~----------------g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSE----------------GEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEEET----------------TEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEEEC----------------CeEEECCEEEECCCCCcc
Confidence            478889999999999999999999999986 6888888764                358999999999999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.27  E-value=0.001  Score=58.00  Aligned_cols=71  Identities=15%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEE--EEEEccccccCCCCCCCCCCcCe-EEEcCEEEEcccCCcccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK--GIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~--GV~~~~~g~~~~g~~~~~~~~g~-~i~Ak~VI~A~G~~s~l~  143 (165)
                      ..+.+.|.+.+++.||+|+++++|+++..+++++|.  .|.+.+               |. ++.||.||+|+|.+....
T Consensus       255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~---------------G~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPN---------------GEMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETT---------------EEEEEECSCEEECCCCEECCH
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECC---------------CcEEEEcCEEEECcCCccCCc
Confidence            356678888999999999999999999875456663  455543               34 799999999999998764


Q ss_pred             hHHHhhcCCC
Q psy9486         144 KSLSSRFNLR  153 (165)
Q Consensus       144 ~~l~~~~gl~  153 (165)
                      . +.+..|+.
T Consensus       320 ~-~l~~~gl~  328 (523)
T 1mo9_A          320 E-LAKILGLD  328 (523)
T ss_dssp             H-HHHHHTCC
T ss_pred             c-CHHHcCCc
Confidence            3 56667764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.18  E-value=0.0001  Score=61.27  Aligned_cols=65  Identities=15%  Similarity=0.074  Sum_probs=52.1

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..+.+.|..|.++|.+++++.||+|+++++|+++..  .         .                 .+.|+.||+|+|.+
T Consensus        91 ~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~---------~-----------------~~~ad~vV~AdG~~  142 (381)
T 3c4a_A           91 LLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L---------P-----------------LADYDLVVLANGVN  142 (381)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C---------C-----------------GGGCSEEEECCGGG
T ss_pred             ceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c---------c-----------------cccCCEEEECCCCC
Confidence            357999999999999999999999999999888731  1         1                 25689999999999


Q ss_pred             cccchHHHhhcCCC
Q psy9486         140 GHLTKSLSSRFNLR  153 (165)
Q Consensus       140 s~l~~~l~~~~gl~  153 (165)
                      |. .+.+.+.++..
T Consensus       143 S~-R~~l~~~~g~~  155 (381)
T 3c4a_A          143 HK-TAHFTEALVPQ  155 (381)
T ss_dssp             GG-TCCSSGGGCCC
T ss_pred             ch-HHhhhhhcCCC
Confidence            98 66654445543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.12  E-value=0.0019  Score=54.77  Aligned_cols=69  Identities=22%  Similarity=0.257  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEc-CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      .+..+|.+.+++.||++++++.|+++..+ +++++.+|.+.+               |.++.||.||+|+|.....  .+
T Consensus       192 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~---------------G~~i~~D~Vv~a~G~~p~~--~l  254 (431)
T 1q1r_A          192 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED---------------GTRLPADLVIAGIGLIPNC--EL  254 (431)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT---------------SCEEECSEEEECCCEEECC--HH
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCC---------------CCEEEcCEEEECCCCCcCc--ch
Confidence            56677888899999999999999999761 257787888865               4589999999999987654  35


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       255 ~~~~gl~  261 (431)
T 1q1r_A          255 ASAAGLQ  261 (431)
T ss_dssp             HHHTTCC
T ss_pred             hhccCCC
Confidence            6667765

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.00  E-value=0.0008  Score=56.27  Aligned_cols=56  Identities=18%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+.+.|++.+++.|++|+++++|++|..+ ++++  |.+ +               |.++.||.||+|.|.+..
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~v--V~~-~---------------g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIE-EKKV--YTR-D---------------NEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETT-TTEE--EET-T---------------CCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEE-CCEE--EEe-C---------------CcEEEeCEEEECCCHHHH
Confidence            467788999999999999999999999875 5665  533 2               358999999999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.99  E-value=0.0017  Score=54.57  Aligned_cols=68  Identities=18%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+.+++.+..++.||+|++++.|+++..  ++++.+|.+.+               |.++.||.||+|+|.....  .+.
T Consensus       186 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~d---------------g~~i~aD~Vv~a~G~~p~~--~l~  246 (410)
T 3ef6_A          186 RIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASD---------------GRSFVADSALICVGAEPAD--QLA  246 (410)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETT---------------SCEEECSEEEECSCEEECC--HHH
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECC---------------CCEEEcCEEEEeeCCeecH--HHH
Confidence            4567788888899999999999999865  34667888875               4689999999999998754  456


Q ss_pred             hhcCCCC
Q psy9486         148 SRFNLRG  154 (165)
Q Consensus       148 ~~~gl~~  154 (165)
                      +..|+..
T Consensus       247 ~~~gl~~  253 (410)
T 3ef6_A          247 RQAGLAC  253 (410)
T ss_dssp             HHTTCCB
T ss_pred             HhCCCcc
Confidence            6677653

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.95  E-value=0.0036  Score=56.70  Aligned_cols=62  Identities=10%  Similarity=0.127  Sum_probs=51.2

Q ss_pred             cEEEE---hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC-CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486          61 NYVVR---LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE  136 (165)
Q Consensus        61 ~~~i~---r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~  136 (165)
                      +|...   .+.+.+.|.+.+++.|++|++++.|.+|+++++ |+++||++.+               |.+|+|+.||.+.
T Consensus       369 g~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~---------------Ge~i~A~~VVs~~  433 (650)
T 1vg0_A          369 PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQF---------------GQRIISKHFIIED  433 (650)
T ss_dssp             SEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETT---------------SCEEECSEEEEEG
T ss_pred             ceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCC---------------CCEEEcCEEEECh
Confidence            45555   568999999999999999999999999998633 8999998654               4689999999744


Q ss_pred             c
Q psy9486         137 G  137 (165)
Q Consensus       137 G  137 (165)
                      .
T Consensus       434 ~  434 (650)
T 1vg0_A          434 S  434 (650)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.93  E-value=0.0035  Score=53.49  Aligned_cols=67  Identities=21%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+.+.|.+.+++.||+|+++++|+++..+ ++++. |.+.+               |.++.||.||+|+|.+...  .+.
T Consensus       203 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~-v~~~~---------------g~~i~aD~Vv~a~G~~p~~--~l~  263 (472)
T 3iwa_A          203 SLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVA-RVITD---------------KRTLDADLVILAAGVSPNT--QLA  263 (472)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEE-EEEES---------------SCEEECSEEEECSCEEECC--HHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CCeEE-EEEeC---------------CCEEEcCEEEECCCCCcCH--HHH
Confidence            45677888889999999999999999874 56655 55554               3589999999999998754  355


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       264 ~~~gl~  269 (472)
T 3iwa_A          264 RDAGLE  269 (472)
T ss_dssp             HHHTCC
T ss_pred             HhCCcc
Confidence            667765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.91  E-value=0.0035  Score=55.13  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=53.8

Q ss_pred             EEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ...++.++.++|.+.+++.|+  +|+++++|+++.+++++..+.|.+.+               |.++.|+.||+|+|..
T Consensus        82 ~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~---------------G~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           82 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDH---------------GEVYRAKYVVNAVGLL  146 (540)
T ss_dssp             SEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETT---------------SCEEEEEEEEECCCSC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcC---------------CCEEEeCEEEECCccc
Confidence            457899999999999999999  89999999999987554556677765               4579999999999975


Q ss_pred             c
Q psy9486         140 G  140 (165)
Q Consensus       140 s  140 (165)
                      +
T Consensus       147 s  147 (540)
T 3gwf_A          147 S  147 (540)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.82  E-value=0.0049  Score=50.19  Aligned_cols=63  Identities=19%  Similarity=0.152  Sum_probs=50.9

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +++..+.++|.+.+++.|++++.++.|+.+..++++. +-|.+.+               |.++.++.||+|+|..+..
T Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~v~~~~---------------g~~~~~~~li~AtG~~~~~  133 (360)
T 3ab1_A           71 VPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGT-FETRTNT---------------GNVYRSRAVLIAAGLGAFE  133 (360)
T ss_dssp             EEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSC-EEEEETT---------------SCEEEEEEEEECCTTCSCC
T ss_pred             CCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCce-EEEEECC---------------CcEEEeeEEEEccCCCcCC
Confidence            6788999999999999999999999999998853333 3466654               3579999999999997644

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.79  E-value=0.0012  Score=57.45  Aligned_cols=62  Identities=19%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             HHHHHHHHCC-CEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          72 WLGEQAEAMG-VEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        72 ~L~~~A~~~G-v~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .++..|++.| ++|++++.|++|++++++ +++||++.+    .+|...    .-.+++|+.||+|+|+..+
T Consensus       226 ~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~----~~g~~~----~~~~v~A~~VIlaaG~~~s  289 (504)
T 1n4w_A          226 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKD----TDGKLL----ATKEISCRYLFLGAGSLGS  289 (504)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEEC----TTCCEE----EEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeC----CCCccc----eeEEEeeCEEEEccCCCCC
Confidence            3456677776 999999999999997434 899998863    233100    0147999999999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.0031  Score=54.15  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcC-eEEEcCEEEEcccCCcccchHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g-~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      .+-+.|.+..++.||+|+++++|+++..+++++++.|.+.+               | .++.||.||+|+|.....  .|
T Consensus       227 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------------G~~~i~~D~vv~a~G~~p~~--~l  289 (479)
T 2hqm_A          227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMND---------------SKSIDDVDELIWTIGRKSHL--GM  289 (479)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETT---------------SCEEEEESEEEECSCEEECC--CS
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECC---------------CcEEEEcCEEEECCCCCCcc--cc
Confidence            45667788888899999999999999765345455677764               4 479999999999987755  33


Q ss_pred             -HhhcCCC
Q psy9486         147 -SSRFNLR  153 (165)
Q Consensus       147 -~~~~gl~  153 (165)
                       .+..|+.
T Consensus       290 ~l~~~gl~  297 (479)
T 2hqm_A          290 GSENVGIK  297 (479)
T ss_dssp             SGGGGTCC
T ss_pred             ChhhcCce
Confidence             3446664

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.78  E-value=0.0054  Score=50.86  Aligned_cols=68  Identities=16%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+.|.+..++.|++|+++++|+++..+ ++ .+.|.+.+               |.++.|+.||+|+|.++..  .+
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~---------------g~~i~~d~vv~a~G~~p~~--~l  247 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA-GE-GLEAHLSD---------------GEVIPCDLVVSAVGLRPRT--EL  247 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE-TT-EEEEEETT---------------SCEEEESEEEECSCEEECC--HH
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec-CC-EEEEEECC---------------CCEEECCEEEECcCCCcCH--HH
Confidence            345678888889999999999999999765 33 34566654               4579999999999998865  25


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       248 ~~~~g~~  254 (384)
T 2v3a_A          248 AFAAGLA  254 (384)
T ss_dssp             HHHTTCC
T ss_pred             HHHCCCC
Confidence            6667775

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.68  E-value=0.0021  Score=55.92  Aligned_cols=71  Identities=21%  Similarity=0.147  Sum_probs=48.8

Q ss_pred             HHHHHHHHHCC-CEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486          71 KWLGEQAEAMG-VEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus        71 ~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                      ..++..|++.| ++|++++.|++|++++++ +++||++.+    .+|...    .-..++|+.||+|+|+..+  .++..
T Consensus       230 ~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~----~~g~~~----~~~~~~A~~VIlaaGa~~s--p~lL~  299 (507)
T 1coy_A          230 KTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQID----EQGNVV----ATKVVTADRVFFAAGSVGT--SKLLV  299 (507)
T ss_dssp             TTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEEC----TTSCEE----EEEEEEEEEEEECSHHHHH--HHHHH
T ss_pred             HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeC----CCCccc----ccEEEEeCEEEEccCccCC--HHHHH
Confidence            34456677765 999999999999997445 799998864    233100    0137999999999998753  34444


Q ss_pred             hcC
Q psy9486         149 RFN  151 (165)
Q Consensus       149 ~~g  151 (165)
                      ..|
T Consensus       300 ~Sg  302 (507)
T 1coy_A          300 SMK  302 (507)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            333

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.58  E-value=0.0064  Score=52.52  Aligned_cols=67  Identities=21%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+..++.+..++.||++++++.|+++..+ ++.+ .|.+.+               |.++.|+.||+|.|.....  .+.
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~d---------------G~~i~aD~Vv~a~G~~pn~--~l~  287 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKD---------------GRKVETDHIVAAVGLEPNV--ELA  287 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETT---------------SCEEEESEEEECCCEEECC--TTH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECC---------------CCEEECCEEEECCCCCccH--HHH
Confidence            56778888889999999999999999764 4443 677764               4589999999999988754  245


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       288 ~~~gl~  293 (493)
T 1m6i_A          288 KTGGLE  293 (493)
T ss_dssp             HHHTCC
T ss_pred             HHcCCc
Confidence            556764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.57  E-value=0.0073  Score=48.94  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +++..+.++|.+.+++.|++++.+++|.++..++ +.+ .|.+.+               + ++.++.||+|+|.++
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~---------------g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADD-AYY-TIATTT---------------E-TYHADYIFVATGDYN  143 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SSE-EEEESS---------------C-CEEEEEEEECCCSTT
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECC-CeE-EEEeCC---------------C-EEEeCEEEECCCCCC
Confidence            5667888899999999999999999999998753 332 355543               2 589999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.54  E-value=0.0063  Score=53.60  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             EEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..++.++..+|.+.+++.|+  +++++++|+++.+++++..+.|.+.+               |.++.|+.||+|+|..+
T Consensus        95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~---------------G~~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A           95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR---------------GDEVSARFLVVAAGPLS  159 (549)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETT---------------CCEEEEEEEEECCCSEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECC---------------CCEEEeCEEEECcCCCC
Confidence            45788899999999999998  89999999999987555556677765               45799999999999643

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.52  E-value=0.003  Score=55.08  Aligned_cols=69  Identities=17%  Similarity=0.167  Sum_probs=49.5

Q ss_pred             HHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEE---EcCEEEEcccCCcccchHH
Q psy9486          71 KWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMEL---HAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        71 ~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i---~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+.|++ .|++|++++.|++|+.+ +++++||++.+.   .+|+.       .++   .+|.||+|+|+.+  +.+|
T Consensus       199 ~~~l~~~~~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~---~~g~~-------~~~~v~~~~~VIlaaG~~~--sp~l  265 (546)
T 1kdg_A          199 ATYLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDP---TLGPN-------GFIPVTPKGRVILSAGAFG--TSRI  265 (546)
T ss_dssp             HTHHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCT---TSSGG-------GEEEEEEEEEEEECSHHHH--HHHH
T ss_pred             HHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEec---CCCce-------eEEEEEeCCEEEEcCChhc--CHHH
Confidence            345666665 69999999999999996 689999998751   13422       123   7899999999865  3455


Q ss_pred             HhhcCC
Q psy9486         147 SSRFNL  152 (165)
Q Consensus       147 ~~~~gl  152 (165)
                      ....|+
T Consensus       266 L~~sGi  271 (546)
T 1kdg_A          266 LFQSGI  271 (546)
T ss_dssp             HHHTTB
T ss_pred             HHHcCC
Confidence            555555

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.49  E-value=0.0077  Score=52.57  Aligned_cols=63  Identities=13%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             EEEhHHHHHHHHHHHHHCC--CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~G--v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..++.++.++|...+++.+  ++++++++|.++.+++++..+.|.+.+               |.+++|+.||+|+|.++
T Consensus        90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~---------------G~~~~ad~vV~AtG~~s  154 (542)
T 1w4x_A           90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNH---------------GDRIRARYLIMASGQLS  154 (542)
T ss_dssp             SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETT---------------CCEEEEEEEEECCCSCC
T ss_pred             cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECC---------------CCEEEeCEEEECcCCCC
Confidence            3567888899988888876  789999999999986544445577754               35799999999999875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.49  E-value=0.012  Score=47.12  Aligned_cols=61  Identities=25%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +++..+..+|.+.+++.|++++.++.|..+..+ ++. +-|.+.+               |.++.++.||+|+|..+.
T Consensus        62 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~-~~v~~~~---------------g~~~~~~~lv~AtG~~~~  122 (335)
T 2zbw_A           62 VYAKDLVKGLVEQVAPFNPVYSLGERAETLERE-GDL-FKVTTSQ---------------GNAYTAKAVIIAAGVGAF  122 (335)
T ss_dssp             EEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEE-TTE-EEEEETT---------------SCEEEEEEEEECCTTSEE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEEC-CCE-EEEEECC---------------CCEEEeCEEEECCCCCCC
Confidence            567889999999999999999999999999875 332 3355543               347999999999998653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.46  E-value=0.0069  Score=52.21  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-  146 (165)
                      .+.+.|.+.+++.||+|+++++|+++..++++ .+.|.+.+               |.++.||.||+|+|.+.... .| 
T Consensus       232 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~---------------G~~i~~D~vv~a~G~~p~~~-~L~  294 (490)
T 1fec_A          232 ELRKQLTEQLRANGINVRTHENPAKVTKNADG-TRHVVFES---------------GAEADYDVVMLAIGRVPRSQ-TLQ  294 (490)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEECTTS-CEEEEETT---------------SCEEEESEEEECSCEEESCT-TSC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-EEEEEECC---------------CcEEEcCEEEEccCCCcCcc-ccC
Confidence            45667888889999999999999999875333 34677654               35799999999999887642 22 


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       295 l~~~gl~  301 (490)
T 1fec_A          295 LEKAGVE  301 (490)
T ss_dssp             GGGGTCC
T ss_pred             chhcCcc
Confidence            3446664

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.43  E-value=0.0015  Score=57.42  Aligned_cols=59  Identities=15%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             HHHHHHH-HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCc
Q psy9486          72 WLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHG  140 (165)
Q Consensus        72 ~L~~~A~-~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s  140 (165)
                      .++..|. +.|++|++++.|++|+++++++++||++.+.   .+|+.       ..++|+ .||+|+|+..
T Consensus       213 a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~---~~g~~-------~~i~A~k~VIlaaG~~~  273 (546)
T 2jbv_A          213 SYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDS---AFGHT-------HRLTARNEVVLSTGAID  273 (546)
T ss_dssp             HHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESS---TTSCE-------EEEEEEEEEEECSHHHH
T ss_pred             HHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEEC---CCCcE-------EEEEeCccEEEecCccC
Confidence            3444454 5899999999999999963389999988641   11332       379997 9999999853

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.42  E-value=0.0096  Score=51.04  Aligned_cols=58  Identities=17%  Similarity=0.228  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.|.+.+++.||+|++++.|+++..+ ++.+ .|.+.+               |.++.||.||+|+|.....
T Consensus       233 ~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          233 DLRQLLNDAMVAKGISIIYEATVSQVQST-ENCY-NVVLTN---------------GQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSSE-EEEETT---------------SCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCEE-EEEECC---------------CcEEEcCEEEEeeCCCcCC
Confidence            45667888888999999999999999875 4554 677764               4589999999999987655

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.39  E-value=0.014  Score=46.35  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=49.1

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +++..+..+|.+.+++.|++++++++|.++..++++. +.|.+.+               | ++.++.||+|+|.++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~v~~~~---------------g-~~~~d~vVlAtG~~~  123 (332)
T 3lzw_A           64 IRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGV-FKLVTNE---------------E-THYSKTVIITAGNGA  123 (332)
T ss_dssp             EEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSC-EEEEESS---------------E-EEEEEEEEECCTTSC
T ss_pred             CCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCc-EEEEECC---------------C-EEEeCEEEECCCCCc
Confidence            5788999999999999999999999999998863323 4466664               3 599999999999843

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.39  E-value=0.011  Score=51.08  Aligned_cols=69  Identities=19%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-  146 (165)
                      .+-..|.+..++.||+|++++.|+++..+ ++.++.|.+.+               |.++.||.||+|+|..... ..| 
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~---------------G~~i~~D~vv~a~G~~p~~-~~L~  298 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLN-TDGSKHVTFES---------------GKTLDVDVVMMAIGRIPRT-NDLQ  298 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEC-TTSCEEEEETT---------------SCEEEESEEEECSCEEECC-GGGT
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCceEEEEECC---------------CcEEEcCEEEECCCCcccc-cccc
Confidence            45667788888999999999999999775 33334677654               3579999999999988765 223 


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       299 l~~~gl~  305 (495)
T 2wpf_A          299 LGNVGVK  305 (495)
T ss_dssp             GGGTTCC
T ss_pred             hhhcCcc
Confidence            4456654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.37  E-value=0.0081  Score=48.07  Aligned_cols=61  Identities=18%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+..+..+|.+.+++.|++++.++ |.++..+ ++.+ -|.+ +               +..++++.||+|+|.++..
T Consensus        66 ~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~-~~~~-~v~~-~---------------~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           66 GILGVELTDKFRKQSERFGTTIFTET-VTKVDFS-SKPF-KLFT-D---------------SKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECS-SSSE-EEEC-S---------------SEEEEEEEEEECCCEEECC
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEc-CCEE-EEEE-C---------------CcEEEcCEEEECCCCCcCC
Confidence            46788999999999999999999986 8888764 3332 3555 3               3589999999999988643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.34  E-value=0.009  Score=47.31  Aligned_cols=63  Identities=21%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC-CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .++..+.++|.+.+++.|++++.+++|..+..+.+ +....|.+.+               |.++.++.+|+|+|.++.
T Consensus        53 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~---------------g~~~~~~~lv~AtG~~~~  116 (310)
T 1fl2_A           53 TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETAS---------------GAVLKARSIIVATGAKWR  116 (310)
T ss_dssp             EEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETT---------------SCEEEEEEEEECCCEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECC---------------CCEEEeCEEEECcCCCcC
Confidence            46778899999999999999999999999965421 2234466654               347999999999998753

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.34  E-value=0.0047  Score=52.14  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.+.|++.+++.|++|+++++|++|..+ ++.++.|.+.+                .++.|+.||+|.+.+.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~v~~~~----------------~~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQ-AEGRWKVSLRD----------------SSLEADHVISAIPASV  290 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEC-GGGCEEEECSS----------------CEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCceEEEEECC----------------eEEEcCEEEECCCHHH
Confidence            68888999999999999999999999886 34434566542                4799999999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.32  E-value=0.0087  Score=50.89  Aligned_cols=69  Identities=19%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-  146 (165)
                      .+.++|.+..++.||+++++++|+++..++++. +.|.+.+               |.++.||.||+|+|..+... .| 
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~---------------g~~i~~D~vv~a~G~~p~~~-~l~  271 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS-LTLELED---------------GRSETVDCLIWAIGREPAND-NIN  271 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSC-EEEEETT---------------SCEEEESEEEECSCEEESCT-TSC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcE-EEEEECC---------------CcEEEcCEEEECCCCCcCCC-CCC
Confidence            466778888899999999999999998753333 4566654               35799999999999987652 22 


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       272 ~~~~gl~  278 (450)
T 1ges_A          272 LEAAGVK  278 (450)
T ss_dssp             HHHHTCC
T ss_pred             chhcCce
Confidence            3445654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.31  E-value=0.017  Score=49.48  Aligned_cols=66  Identities=14%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+.+.|.+.+++.||+|+++++|+++..  ++++.+|.+.+                .++.||.||+|+|.....  .+.
T Consensus       228 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~~----------------~~i~~D~vi~a~G~~p~~--~~l  287 (480)
T 3cgb_A          228 DMAEYIYKEADKHHIEILTNENVKAFKG--NERVEAVETDK----------------GTYKADLVLVSVGVKPNT--DFL  287 (480)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEE--SSBEEEEEETT----------------EEEECSEEEECSCEEESC--GGG
T ss_pred             HHHHHHHHHHHHcCcEEEcCCEEEEEEc--CCcEEEEEECC----------------CEEEcCEEEECcCCCcCh--HHH
Confidence            5667788889999999999999999975  35676777653                479999999999988654  244


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       288 ~~~g~~  293 (480)
T 3cgb_A          288 EGTNIR  293 (480)
T ss_dssp             TTSCCC
T ss_pred             HhCCcc
Confidence            556654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.30  E-value=0.013  Score=49.73  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+.+++.||+|++++.|+++..+ ++++ .|.+.+               + ++.||.||+|+|.....
T Consensus       190 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~---------------g-~i~aD~Vv~A~G~~p~~  246 (452)
T 3oc4_A          190 EMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLETSE---------------Q-EISCDSGIFALNLHPQL  246 (452)
T ss_dssp             HHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEESS---------------C-EEEESEEEECSCCBCCC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEECC---------------C-EEEeCEEEECcCCCCCh
Confidence            45567788888999999999999999864 5666 677754               3 89999999999987654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.29  E-value=0.01  Score=50.35  Aligned_cols=58  Identities=21%  Similarity=0.285  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.|.+..++.||+|+++++|+++..+ ++++.+|.+ +               |.++.||.||+|+|.....
T Consensus       192 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~-~---------------g~~i~~D~vv~a~G~~p~~  249 (452)
T 2cdu_A          192 EFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTL-D---------------GKEIKSDIAILCIGFRPNT  249 (452)
T ss_dssp             HHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEET-T---------------SCEEEESEEEECCCEEECC
T ss_pred             hHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEe-C---------------CCEEECCEEEECcCCCCCH
Confidence            45667888889999999999999999764 577766655 2               3589999999999988764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.26  E-value=0.013  Score=46.45  Aligned_cols=62  Identities=24%  Similarity=0.149  Sum_probs=48.6

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+++..+.++|.+.+++.|++++. ++|.++..+ ++. +-|.+.+               |.++.++.||+|+|.++..
T Consensus        55 ~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~-~~~-~~v~~~~---------------g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           55 VVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKK-DSH-FVILAED---------------GKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             CBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEE-TTE-EEEEETT---------------SCEEEEEEEEECCCEEECC
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEc-CCE-EEEEEcC---------------CCEEECCEEEECCCCCCCC
Confidence            567889999999999999999998 789999875 343 2344443               3579999999999987644

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.25  E-value=0.0045  Score=55.19  Aligned_cols=62  Identities=19%  Similarity=0.312  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcC---CCcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHG  140 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~---~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s  140 (165)
                      ....+|...+++.+++|++++.|++|+++.   +++++||+..+    .+|..       .+++|+ -||+|+|+-.
T Consensus       228 aa~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~----~~G~~-------~~v~A~kEVILsAGa~~  293 (583)
T 3qvp_A          228 AAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT----HKGNT-------HNVYAKHEVLLAAGSAV  293 (583)
T ss_dssp             HHHHHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEES----STTCE-------EEEEEEEEEEECSCTTT
T ss_pred             HHHHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEe----cCCcE-------EEEEECCEEEEeCCccC
Confidence            455566555566899999999999999973   57999999874    24433       368895 6999999775

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.25  E-value=0.014  Score=49.56  Aligned_cols=68  Identities=18%  Similarity=0.089  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+.+.|.+.+++.||+|+++++|+++..+  +..+.|.+.+                .++.||.||+|+|.+........
T Consensus       217 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~v~~~~----------------~~i~aD~Vv~a~G~~p~~~~l~l  278 (467)
T 1zk7_A          217 AIGEAVTAAFRAEGIEVLEHTQASQVAHM--DGEFVLTTTH----------------GELRADKLLVATGRTPNTRSLAL  278 (467)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEE--TTEEEEEETT----------------EEEEESEEEECSCEEESCTTSCG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEECC----------------cEEEcCEEEECCCCCcCCCcCCc
Confidence            46677888889999999999999999764  3344566643                47999999999999876421112


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       279 ~~~gl~  284 (467)
T 1zk7_A          279 DAAGVT  284 (467)
T ss_dssp             GGGTCC
T ss_pred             hhcCCc
Confidence            345554

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.25  E-value=0.0017  Score=56.99  Aligned_cols=66  Identities=15%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEE---EcCEEEEcccCCcccchHHH
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMEL---HAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i---~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      |...|++.|++|++++.|++|+++++  ++++||+..+    .+|+.       ..+   .++.||+|+|+..  +.+|.
T Consensus       200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~----~~g~~-------~~~~v~a~k~VILaaGa~~--sp~lL  266 (536)
T 1ju2_A          200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD----SNGTP-------HQAFVRSKGEVIVSAGTIG--TPQLL  266 (536)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEEC----TTSCE-------EEEEEEEEEEEEECCHHHH--HHHHH
T ss_pred             hhhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEe----CCCce-------EEEEeccCCEEEEcCcccC--CHHHH
Confidence            44556788999999999999999742  4899998864    23422       145   5699999999875  34444


Q ss_pred             hhcC
Q psy9486         148 SRFN  151 (165)
Q Consensus       148 ~~~g  151 (165)
                      ...|
T Consensus       267 ~~SG  270 (536)
T 1ju2_A          267 LLSG  270 (536)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            4444

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.24  E-value=0.01  Score=47.30  Aligned_cols=70  Identities=10%  Similarity=0.091  Sum_probs=50.7

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhc
Q psy9486          71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF  150 (165)
Q Consensus        71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~  150 (165)
                      ..+.+++++.||+++++++|+++..+ ++++.+|.+.+.   .+|+.       .++.+|.||+|+|.....  .+.+.+
T Consensus       194 ~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~-------~~i~~D~vi~a~G~~p~~--~~l~~~  260 (319)
T 3cty_A          194 NAYVQEIKKRNIPYIMNAQVTEIVGD-GKKVTGVKYKDR---TTGEE-------KLIETDGVFIYVGLIPQT--SFLKDS  260 (319)
T ss_dssp             HHHHHHHHHTTCCEECSEEEEEEEES-SSSEEEEEEEET---TTCCE-------EEECCSEEEECCCEEECC--GGGTTS
T ss_pred             HHHHHHHhcCCcEEEcCCeEEEEecC-CceEEEEEEEEc---CCCce-------EEEecCEEEEeeCCccCh--HHHhhc
Confidence            45677888999999999999999875 566888877531   12321       369999999999987643  344456


Q ss_pred             CCC
Q psy9486         151 NLR  153 (165)
Q Consensus       151 gl~  153 (165)
                      |+.
T Consensus       261 gl~  263 (319)
T 3cty_A          261 GVK  263 (319)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.19  E-value=0.011  Score=51.98  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=52.7

Q ss_pred             EEEEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          62 YVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ...++.++..+|.+.+++.|+  .+.+++.|+++.+++++..+.|.+.+               |.++.|+.||+|+|..
T Consensus        82 ~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~---------------G~~~~ad~lV~AtG~~  146 (545)
T 3uox_A           82 NFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDN---------------EEVVTCRFLISATGPL  146 (545)
T ss_dssp             SSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETT---------------TEEEEEEEEEECCCSC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECC---------------CCEEEeCEEEECcCCC
Confidence            346788999999999999998  89999999999986554556677765               4689999999999965


Q ss_pred             c
Q psy9486         140 G  140 (165)
Q Consensus       140 s  140 (165)
                      +
T Consensus       147 s  147 (545)
T 3uox_A          147 S  147 (545)
T ss_dssp             B
T ss_pred             C
Confidence            4

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.18  E-value=0.013  Score=50.20  Aligned_cols=68  Identities=12%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             EEEhHHHHHHHHHHHHHCCCE--EecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~--i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+++..+.++|.+.+++.|++  |+++++|+++..++++..+.|.+.+.   .+|+       ..++.+|.||+|+|.++
T Consensus        97 ~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~---~~g~-------~~~~~~d~VVvAtG~~s  166 (464)
T 2xve_A           97 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH---TTDT-------IYSEEFDYVVCCTGHFS  166 (464)
T ss_dssp             SCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEET---TTTE-------EEEEEESEEEECCCSSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEc---CCCc-------eEEEEcCEEEECCCCCC
Confidence            357889999999999999998  99999999998764322344555430   1121       14689999999999654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.12  E-value=0.013  Score=49.87  Aligned_cols=76  Identities=18%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+.++|.+..++.||+|+++++|+++..++++..+.|.+.+.   .+|       .+.++.+|.||+|+|.......-+.
T Consensus       225 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~---~~g-------~~~~~~~D~vv~a~G~~p~~~~l~l  294 (478)
T 1v59_A          225 EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDT---KTN-------KQENLEAEVLLVAVGRRPYIAGLGA  294 (478)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEET---TTT-------EEEEEEESEEEECSCEEECCTTSCT
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEc---CCC-------CceEEECCEEEECCCCCcCCCCCCc
Confidence            466778888899999999999999997621344455665420   011       1357999999999998876532233


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       295 ~~~g~~  300 (478)
T 1v59_A          295 EKIGLE  300 (478)
T ss_dssp             TTTTCC
T ss_pred             hhcCce
Confidence            445554

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.11  E-value=0.017  Score=49.66  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.|.+.+++.||+|+++++|+++..+ ++.+ .|.+.+               |.++.||.||+|+|.+...
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTD---------------GRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETT---------------SCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECC---------------CcEEEcCEEEECCCCCcCC
Confidence            45677888889999999999999999875 3443 455543               3579999999999988754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.10  E-value=0.017  Score=46.94  Aligned_cols=71  Identities=14%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                      +-+.|.+..++.||++++++.|.++..+ ++++.+|.+..    .+|+.       .++.+|.||+|+|.....  .+.+
T Consensus       204 ~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~----~~g~~-------~~i~~D~vi~a~G~~p~~--~~l~  269 (360)
T 3ab1_A          204 TAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHLRS----SDGSK-------WTVEADRLLILIGFKSNL--GPLA  269 (360)
T ss_dssp             HHHSSHHHHHHTSEEEESSEEEEEEEEE-TTEEEEEEEEE----TTCCE-------EEEECSEEEECCCBCCSC--GGGG
T ss_pred             HHHHHHHHhhcCceEEEcCcCHHHhccC-CCceEEEEEEe----cCCCe-------EEEeCCEEEECCCCCCCH--HHHH
Confidence            4556777888899999999999999875 57777887752    13321       479999999999977643  3445


Q ss_pred             hcCCC
Q psy9486         149 RFNLR  153 (165)
Q Consensus       149 ~~gl~  153 (165)
                      .+++.
T Consensus       270 ~~~~~  274 (360)
T 3ab1_A          270 RWDLE  274 (360)
T ss_dssp             GSSCC
T ss_pred             hhccc
Confidence            56654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.09  E-value=0.0022  Score=57.02  Aligned_cols=60  Identities=20%  Similarity=0.343  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG  140 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s  140 (165)
                      ..+|...+++.|++|++++.|++|+++++   ++++||+..+    .+|+.       ..++| |.||+|+|+-.
T Consensus       234 ~~~l~~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~----~~g~~-------~~v~A~k~VILaaG~~~  297 (587)
T 1gpe_A          234 RAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGT----NKAVN-------FDVFAKHEVLLAAGSAI  297 (587)
T ss_dssp             HHHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEE----ETTEE-------EEEEEEEEEEECSCTTT
T ss_pred             HHHHHHhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEe----CCCcE-------EEEEecccEEEccCCCC
Confidence            34544455568999999999999999642   5899998873    23432       36899 99999999865

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.06  E-value=0.014  Score=49.63  Aligned_cols=58  Identities=19%  Similarity=0.149  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEE-EccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-TGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~-~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.|.+.+++.||+|++++.|+++..++++ ++.|. +.+               |. +.||.||+|+|.+...
T Consensus       212 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~v~~~~~---------------g~-i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          212 DMRRGLHAAMEEKGIRILCEDIIQSVSADADG-RRVATTMKH---------------GE-IVADQVMLALGRMPNT  270 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECTTS-CEEEEESSS---------------CE-EEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEcCCC-EEEEEEcCC---------------Ce-EEeCEEEEeeCcccCC
Confidence            45677888899999999999999999875334 34677 654               44 9999999999987654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.03  E-value=0.026  Score=44.67  Aligned_cols=64  Identities=17%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCC-CCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD-GSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~-g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.|.+.+++.||+|+++++|+++..+ ++++.+|.+.+.   .+ |+       ..++.+|.||+|+|.....
T Consensus       185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~~g~-------~~~i~~D~vv~a~G~~p~~  249 (320)
T 1trb_A          185 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDT---QNSDN-------IESLDVAGLFVAIGHSPNT  249 (320)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECC---TTCCC-------CEEEECSEEEECSCEEESC
T ss_pred             HHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEec---cCCCc-------eEEEEcCEEEEEeCCCCCh
Confidence            45556777788899999999999999875 568888887641   11 32       2479999999999977643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.99  E-value=0.025  Score=47.45  Aligned_cols=63  Identities=16%  Similarity=0.257  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+..++.+..++.||+|++++.|+++. +  +   +|.+.+               |.++.||.||+|+|.....  .+.
T Consensus       188 ~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~~~---------------g~~i~~D~vi~a~G~~p~~--~l~  244 (408)
T 2gqw_A          188 TLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLLDD---------------GTRIAADMVVVGIGVLAND--ALA  244 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEETT---------------SCEEECSEEEECSCEEECC--HHH
T ss_pred             HHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEECC---------------CCEEEcCEEEECcCCCccH--HHH
Confidence            456778888899999999999999997 3  3   566654               4589999999999988654  355


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       245 ~~~gl~  250 (408)
T 2gqw_A          245 RAAGLA  250 (408)
T ss_dssp             HHHTCC
T ss_pred             HhCCCC
Confidence            667764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.97  E-value=0.02  Score=48.46  Aligned_cols=59  Identities=17%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+.+++.||+++++++|+++..+ ++. +.|.+.+               |.++.+|.||+|+|.++..
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~-v~v~~~~---------------g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKG-ARVELEG---------------GEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETT---------------SCEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECC---------------CeEEEcCEEEECcCCCcCC
Confidence            456777888889999999999999999875 333 3455543               3579999999999998765

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.93  E-value=0.02  Score=48.90  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCe-EEEcCEEEEcccCCcccchHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGM-ELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~-~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      .+.+.|.+..++.||+++++++|+++..++ +. +.|.+.+               |. ++.+|.||+|+|...... .|
T Consensus       208 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~---------------G~~~i~~D~vv~a~G~~p~~~-~l  269 (463)
T 2r9z_A          208 LLSATLAENMHAQGIETHLEFAVAALERDA-QG-TTLVAQD---------------GTRLEGFDSVIWAVGRAPNTR-DL  269 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEET-TE-EEEEETT---------------CCEEEEESEEEECSCEEESCT-TS
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-Ce-EEEEEeC---------------CcEEEEcCEEEECCCCCcCCC-CC
Confidence            455677888899999999999999997653 33 4566654               45 799999999999887652 22


Q ss_pred             -HhhcCCC
Q psy9486         147 -SSRFNLR  153 (165)
Q Consensus       147 -~~~~gl~  153 (165)
                       .+..|+.
T Consensus       270 ~~~~~g~~  277 (463)
T 2r9z_A          270 GLEAAGIE  277 (463)
T ss_dssp             CHHHHTCC
T ss_pred             CchhcCCc
Confidence             3445553

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.92  E-value=0.021  Score=44.89  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ++...+..+|.+.+++.|++++. +.|.++..+ ++. +-|.+.+               |.++.++.||+|+|....
T Consensus        67 ~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~-~~~-~~v~~~~---------------g~~~~~d~lvlAtG~~~~  126 (323)
T 3f8d_A           67 IQASDMIKVFNKHIEKYEVPVLL-DIVEKIENR-GDE-FVVKTKR---------------KGEFKADSVILGIGVKRR  126 (323)
T ss_dssp             EEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC---C-EEEEESS---------------SCEEEEEEEEECCCCEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEec-CCE-EEEEECC---------------CCEEEcCEEEECcCCCCc
Confidence            77889999999999999999999 899999875 333 3466654               358999999999998743

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.87  E-value=0.022  Score=48.47  Aligned_cols=57  Identities=19%  Similarity=0.242  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          67 GHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        67 ~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..+.+.|.+.+++.| ++|+++++|++|..+ ++.| .|.+.+               |..++||.||+|.|...
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v-~v~~~~---------------g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAA-RVTARD---------------GREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSE-EEEETT---------------CCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEE-EEEECC---------------CCEEEcCEEEECCCHHH
Confidence            367778888888899 999999999999885 4443 466654               34799999999999754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.77  E-value=0.014  Score=50.45  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCC
Q psy9486          75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus        75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~  153 (165)
                      +++++.||+|++++.|.++.-  ++++.+|.+.+               |.++.||.||+|.|.+...  .+.+.+|+.
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~--~~~v~~v~~~~---------------g~~i~aD~Vv~a~G~~p~~--~l~~~~g~~  324 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEG--NEKVERVIDMN---------------NHEYKVDALIFADGRRPDI--NPITQAGGK  324 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEEC--SSSCCEEEETT---------------CCEEECSEEEECCCEEECC--HHHHHTTCC
T ss_pred             HHHHhCCcEEEeCCeeEEEec--CCceEEEEeCC---------------CeEEEeCEEEECCCcCcCc--hHHHhcCCC
Confidence            667889999999999999964  35566777654               3589999999999998754  456667764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.76  E-value=0.032  Score=48.10  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeE-EEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME-LHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~-i~Ak~VI~A~G~~s~l  142 (165)
                      .+...+.+..++.||+++++++|+++..++++. +.|.+.+               |.+ +.+|.||+|+|.....
T Consensus       218 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~---------------g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          218 SVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSD---------------GRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETT---------------SCEEEEESEEEECCCBCCTT
T ss_pred             hhHHHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECC---------------CcEEEECCEEEECCCCCcCC
Confidence            556677888899999999999999997643343 4566654               345 9999999999988754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.74  E-value=0.02  Score=45.77  Aligned_cols=63  Identities=19%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+++..+.++|.+.+++.|++++. .+|.++..++ ++..+.|.+.+               |.++.++.||+|+|.++.
T Consensus        61 ~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~---------------g~~~~~~~vv~AtG~~~~  124 (325)
T 2q7v_A           61 PIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGY---------------NGEYRAKAVILATGADPR  124 (325)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEES---------------SCEEEEEEEEECCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECC---------------CCEEEeCEEEECcCCCcC
Confidence            356788999999999999999987 5899887741 12112344433               357999999999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.74  E-value=0.01  Score=50.15  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEE--EEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVK--GIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~--GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ...|..+.++|...+++.|++++++++|+++..++ ++++.  -|.+.+    .+|+.       .++.|+.||+|+|..
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~----g~g~~-------~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          123 YPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRN----ADGEE-------LVRTTRALVVSPGGT  191 (463)
T ss_dssp             CCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEE----TTSCE-------EEEEESEEEECCCCE
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEec----CCCce-------EEEEeCEEEECCCCC
Confidence            45788999999999999999999999999997742 24443  344443    11211       279999999999986


Q ss_pred             ccc
Q psy9486         140 GHL  142 (165)
Q Consensus       140 s~l  142 (165)
                      ..+
T Consensus       192 p~~  194 (463)
T 3s5w_A          192 PRI  194 (463)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            544

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.64  E-value=0.0021  Score=52.24  Aligned_cols=51  Identities=16%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ++.++...+.++|.+.|++.|++|++ ++|+++..+           .                 .++|+.||+|+|+++
T Consensus       136 ~~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~-----------~-----------------~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          136 SLILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEV-----------A-----------------REGADVIVNCTGVWA  186 (351)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH-----------H-----------------HTTCSEEEECCGGGG
T ss_pred             ceEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh-----------h-----------------cCCCCEEEECCCcCh
Confidence            46788899999999999999999998 888776321           1                 267899999999997

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.63  E-value=0.045  Score=47.44  Aligned_cols=69  Identities=22%  Similarity=0.323  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEc------------------CCCcEEEEEEccccccCCCCCCCCCCcCeEEE
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYH------------------GDGSVKGIATGDVGIAKDGSPKDTFARGMELH  128 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~------------------~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~  128 (165)
                      ..+..++.+.+++.||++++++.|+++..+                  +++++. +.+.+               |.++.
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~---------------g~~i~  255 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LTLSN---------------GELLE  255 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EEETT---------------SCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EEEcC---------------CCEEE
Confidence            356677888889999999999999999763                  234433 44433               35899


Q ss_pred             cCEEEEcccCCcccchHHHhhcCCC
Q psy9486         129 AKVTIFAEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus       129 Ak~VI~A~G~~s~l~~~l~~~~gl~  153 (165)
                      ||.||+|+|.....  .+.+..|+.
T Consensus       256 ~D~vi~a~G~~p~~--~l~~~~g~~  278 (565)
T 3ntd_A          256 TDLLIMAIGVRPET--QLARDAGLA  278 (565)
T ss_dssp             ESEEEECSCEEECC--HHHHHHTCC
T ss_pred             cCEEEECcCCccch--HHHHhCCcc
Confidence            99999999998765  355666764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.61  E-value=0.0035  Score=51.23  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=41.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ++.++...+.++|.+.|++.|++|+. ++|+++..  +         .                 + +|+.||+|+|.++
T Consensus       136 ~~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~--~---------~-----------------~-~a~~VV~A~G~~s  185 (363)
T 1c0p_A          136 TLSVHAPKYCQYLARELQKLGATFER-RTVTSLEQ--A---------F-----------------D-GADLVVNATGLGA  185 (363)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGG--T---------C-----------------S-SCSEEEECCGGGG
T ss_pred             cceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhh--c---------C-----------------c-CCCEEEECCCcch
Confidence            46788999999999999999999998 88887732  1         1                 1 6899999999997

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.53  E-value=0.052  Score=43.28  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+-++|.+..++.||++++++.+.++..  ++++.+|.+...   .+|+       ..++.+|.||.|+|.....  .+.
T Consensus       192 ~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~~--~~l  257 (335)
T 2zbw_A          192 ASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHN---QTQE-------ELALEVDAVLILAGYITKL--GPL  257 (335)
T ss_dssp             HHHHHHHHHHHTTSSEEETTEEEEEEEE--SSSEEEEEEEET---TTCC-------EEEEECSEEEECCCEEEEC--GGG
T ss_pred             HHHHHHHhccccCCeEEecCCcceeEcc--CCCeeEEEEEEC---CCCc-------eEEEecCEEEEeecCCCCc--hHh
Confidence            4556777777888999999999999976  366777777520   1232       1479999999999988754  244


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +.+++.
T Consensus       258 ~~~~~~  263 (335)
T 2zbw_A          258 ANWGLA  263 (335)
T ss_dssp             GGSCCC
T ss_pred             hhccee
Confidence            556654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.50  E-value=0.021  Score=49.61  Aligned_cols=62  Identities=21%  Similarity=0.262  Sum_probs=48.5

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC-CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..+..+..+|.+.+++.|++++.+++|..+..+.+ +....|.+.+               |..+.++.||+|+|++.
T Consensus       264 ~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~---------------g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          264 TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETAS---------------GAVLKARSIIIATGAKW  326 (521)
T ss_dssp             BCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETT---------------SCEEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECC---------------CCEEEcCEEEECCCCCc
Confidence            46778899999999999999999999999975321 2234466654               35899999999999865

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=95.38  E-value=0.0079  Score=53.39  Aligned_cols=61  Identities=8%  Similarity=0.219  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEc---CC-CcEEEEEEccccccCCC-CCCCCCCcCeEEEc-CEEEEcccCC
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYH---GD-GSVKGIATGDVGIAKDG-SPKDTFARGMELHA-KVTIFAEGCH  139 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~---~~-g~V~GV~~~~~g~~~~g-~~~~~~~~g~~i~A-k~VI~A~G~~  139 (165)
                      ....+|.....+.+++|++++.|++|+++   ++ ++++||+..+    .+| ..       ..++| |-||+|+|+-
T Consensus       209 a~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~----~~g~~~-------~~v~A~kEVILsAGai  275 (566)
T 3fim_B          209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAE----QEGAPT-------TTVCAKKEVVLSAGSV  275 (566)
T ss_dssp             HHHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEES----STTSCC-------EEEEEEEEEEECCHHH
T ss_pred             HHHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEE----CCCceE-------EEEEeeeEEEEecCCc
Confidence            34555555556689999999999999996   23 6899999875    233 33       47899 7899999964

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=95.27  E-value=0.04  Score=43.83  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=46.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+.+..+..+|.+.+++.|++++. .+|.++..+ ++.+ -|.+.                +.++.++.||+|+|.++.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~-~~~~-~v~~~----------------~~~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           68 SIVGSELAKLFADHAANYAKIREG-VEVRSIKKT-QGGF-DIETN----------------DDTYHAKYVIITTGTTHK  127 (319)
T ss_dssp             SBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEE-TTEE-EEEES----------------SSEEEEEEEEECCCEEEC
T ss_pred             ccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEe-CCEE-EEEEC----------------CCEEEeCEEEECCCCCcc
Confidence            356678888999999999999998 789999775 3432 25553                247999999999998653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.20  E-value=0.061  Score=47.07  Aligned_cols=66  Identities=15%  Similarity=0.141  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+.|.+..++.||+|++++.|+++..+ ++   +|.+.+               |.++.||.||+|+|.....  .+
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~---~v~~~~---------------g~~i~~D~Vi~a~G~~p~~--~~  286 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA---VVRLKS---------------GSVIQTDMLILAIGVQPES--SL  286 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT---EEEETT---------------SCEEECSEEEECSCEEECC--HH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC---EEEECC---------------CCEEEcCEEEEccCCCCCh--HH
Confidence            356677888889999999999999999653 23   466654               4589999999999988754  35


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       287 l~~~g~~  293 (588)
T 3ics_A          287 AKGAGLA  293 (588)
T ss_dssp             HHHTTCC
T ss_pred             HHhcCce
Confidence            5667764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.18  E-value=0.039  Score=46.59  Aligned_cols=67  Identities=15%  Similarity=0.039  Sum_probs=49.2

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...+..+.++|.+.+++.++.|+++++|+++..+ ++. +.|.+.+.   .+|+.      ..++.++.||+|+|.++
T Consensus       111 ~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~-~~~-~~V~~~~~---~~G~~------~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          111 FPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGS-WVVTYKGT---KAGSP------ISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             SCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTE-EEEEEEES---STTCC------EEEEEESEEEECCCSSS
T ss_pred             CCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeC-CCe-EEEEEeec---CCCCe------eEEEEeCEEEECCCCCC
Confidence            4678899999999999999999999999999775 343 33555431   11210      02699999999999965

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.17  E-value=0.055  Score=42.84  Aligned_cols=64  Identities=19%  Similarity=0.197  Sum_probs=48.5

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+++..+..+|.+.+++.|++++.++ |.++..+ ++.+ -+.+...   .+         +..+.++.||+|+|....
T Consensus        80 ~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~-~~~~-~v~~~~~---~~---------~~~~~~d~vvlAtG~~~~  143 (338)
T 3itj_A           80 GLTGSELMDRMREQSTKFGTEIITET-VSKVDLS-SKPF-KLWTEFN---ED---------AEPVTTDAIILATGASAK  143 (338)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECS-SSSE-EEEETTC---SS---------SCCEEEEEEEECCCEEEC
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEc-CCEE-EEEEEec---CC---------CcEEEeCEEEECcCCCcC
Confidence            46788999999999999999999998 9998764 3443 3555320   01         347999999999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=95.15  E-value=0.039  Score=43.29  Aligned_cols=54  Identities=20%  Similarity=0.163  Sum_probs=41.6

Q ss_pred             HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++.||+|++++.+.++..+ ++++.+|.+..    .+|+.       .++.+|.||+|+|.....
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~----~~g~~-------~~~~~D~vv~a~G~~p~~  246 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGD-KMGVAGVKVKL----KDGSI-------RDLNVPGIFTFVGLNVRN  246 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEE-TTEEEEEEEEC----TTSCE-------EEECCSCEEECSCEEECC
T ss_pred             HhcCCeEEEeCcEEEEEEcC-CCcEEEEEEEc----CCCCe-------EEeecCeEEEEEcCCCCc
Confidence            35789999999999999875 56888887762    23432       379999999999987643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.13  E-value=0.054  Score=42.91  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=45.5

Q ss_pred             HHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          71 KWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        71 ~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+++.+. ||+|++++.+.++..+ ++++.+|.+.+.   .+|+       +.++.+|.||+|+|.....
T Consensus       212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~~  273 (338)
T 3itj_A          212 TIMQKRAEKNEKIEILYNTVALEAKGD-GKLLNALRIKNT---KKNE-------ETDLPVSGLFYAIGHTPAT  273 (338)
T ss_dssp             HHHHHHHHHCTTEEEECSEEEEEEEES-SSSEEEEEEEET---TTTE-------EEEEECSEEEECSCEEECC
T ss_pred             HHHHHHHHhcCCeEEeecceeEEEEcc-cCcEEEEEEEEC---CCCc-------eEEEEeCEEEEEeCCCCCh
Confidence            4556667665 9999999999999875 567888877641   1221       2579999999999987644

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.09  E-value=0.051  Score=46.24  Aligned_cols=65  Identities=8%  Similarity=0.071  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+++.+..++.||+|+++++|+++..+ ++.++.|...+.   .++       .+.++.||.||+|+|.....
T Consensus       220 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~~---~~~-------~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          220 MEISKNFQRILQKQGFKFKLNTKVTGATKK-SDGKIDVSIEAA---SGG-------KAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEC-TTSCEEEEEEET---TSC-------CCEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCceEEEEEEc-CCceEEEEEEec---CCC-------CceEEEcCEEEECcCCCcCC
Confidence            345667888889999999999999999875 333123443210   011       13579999999999988754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.06  E-value=0.032  Score=47.14  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.|.+.+++.||+|++++.|+++..+  +++..|.+.                +.++.|+.||+|+|.....
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~~----------------~~~i~~d~vi~a~G~~p~~  248 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTD----------------KNAYDADLVVVAVGVRPNT  248 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEES----------------SCEEECSEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEEC----------------CCEEECCEEEECcCCCCCh
Confidence            456678888899999999999999999653  555556653                2479999999999987754

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=95.02  E-value=0.027  Score=46.81  Aligned_cols=51  Identities=16%  Similarity=0.183  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ...+...+++.| +|+++++|++|..+ ++.|. |.+.+               |.++.||.||+|.|.
T Consensus       207 ~~l~~~~~~~~g-~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          207 ADLVDAMSQEIP-EIRLQTVVTGIDQS-GDVVN-VTVKD---------------GHAFQAHSVIVATPM  257 (431)
T ss_dssp             HHHHHHHHTTCS-CEESSCCEEEEECS-SSSEE-EEETT---------------SCCEEEEEEEECSCG
T ss_pred             HHHHHHHHhhCC-ceEeCCEEEEEEEc-CCeEE-EEECC---------------CCEEEeCEEEEecCc
Confidence            344445566678 99999999999875 44544 67754               346999999999994

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=95.00  E-value=0.063  Score=45.80  Aligned_cols=64  Identities=17%  Similarity=0.234  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+..++.||+|++++.|.++..++++.+ .|.+.+.   .+|+       ..++.+|.||+|+|.....
T Consensus       228 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~---~~~~-------~~~~~~D~vi~a~G~~p~~  291 (483)
T 3dgh_A          228 QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNV---ETGE-------ESEDVYDTVLWAIGRKGLV  291 (483)
T ss_dssp             HHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEET---TTCC-------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecC---CCCc-------eeEEEcCEEEECcccccCc
Confidence            4566778888899999999999999987544543 3655430   1121       1379999999999987654

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=94.87  E-value=0.042  Score=49.13  Aligned_cols=63  Identities=14%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             CCCEEecCCceeEEEEcCC-CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCC
Q psy9486          80 MGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRG  154 (165)
Q Consensus        80 ~Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~  154 (165)
                      .|++|++++.|++|+.+++ ++++||+..+.   ++|+.       .++.|+.||+|+|....  .++....|+-+
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~---~~g~~-------~~i~A~~VIlaaG~~~s--~~lL~~sgiG~  336 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDL---ISGDR-------FEIKADVYVLTAGAVHN--TQLLVNSGFGQ  336 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEET---TTCCE-------EEECEEEEEECSCTTHH--HHHHHTTTSSC
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEc---CCCcE-------EEEECCEEEEcCCCcCC--HHHHHhcCCCc
Confidence            3899999999999999643 48999988751   23432       37999999999997764  35555556544

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=94.86  E-value=0.021  Score=50.77  Aligned_cols=52  Identities=17%  Similarity=0.412  Sum_probs=41.0

Q ss_pred             HHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCc
Q psy9486          78 EAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG  140 (165)
Q Consensus        78 ~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s  140 (165)
                      .+.+++|++++.|++|+++. +++++||+...    .+|..       ..++| |-||+|+|+-.
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~----~~g~~-------~~v~A~keVILsaGa~~  270 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVT----AAGNE-------LNFFADREVILSQGVFE  270 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEE----TTSCE-------EEEEEEEEEEECSHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEe----CCCcE-------EEEEeeeEEEEcccccC
Confidence            45799999999999999963 57999999875    23433       36888 67999999754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.81  E-value=0.043  Score=44.11  Aligned_cols=61  Identities=20%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEE-EEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV-~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+.+..+..+|.+.+++.|++++.++ |.++.. ++..  .| .+.+               |.++.++.||+|+|.++.
T Consensus        67 ~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~--~v~~~~~---------------g~~~~~d~lviAtG~~~~  127 (335)
T 2a87_A           67 GITGPELMDEMREQALRFGADLRMED-VESVSL-HGPL--KSVVTAD---------------GQTHRARAVILAMGAAAR  127 (335)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSS--EEEEETT---------------SCEEEEEEEEECCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcE--EEEEeCC---------------CCEEEeCEEEECCCCCcc
Confidence            36778888999999999999999987 888865 2222  24 4433               357999999999998764


Q ss_pred             c
Q psy9486         142 L  142 (165)
Q Consensus       142 l  142 (165)
                      .
T Consensus       128 ~  128 (335)
T 2a87_A          128 Y  128 (335)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.78  E-value=0.048  Score=46.78  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+..++.||+|+++++|+++..  ++++.+|.+.                |.++.||.||+|+|.....
T Consensus       237 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~~----------------g~~i~~D~Vi~a~G~~p~~  293 (490)
T 2bc0_A          237 DLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIITD----------------KNEYDVDMVILAVGFRPNT  293 (490)
T ss_dssp             HHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEES----------------SCEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEEC----------------CcEEECCEEEECCCCCcCh
Confidence            4556778888899999999999999964  4566566653                3579999999999987754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.77  E-value=0.046  Score=43.09  Aligned_cols=61  Identities=16%  Similarity=0.141  Sum_probs=45.3

Q ss_pred             HHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          70 VKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        70 d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +..+.++.++ .||+++++++++++..+ ++++.+|++.+.   .+|+.       .++.+|.||+|+|....
T Consensus       182 ~~~~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~-------~~i~~D~vi~a~G~~p~  243 (310)
T 1fl2_A          182 DQVLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDR---VSGDI-------HNIELAGIFVQIGLLPN  243 (310)
T ss_dssp             CHHHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEEEEET---TTCCE-------EEEECSEEEECSCEEES
T ss_pred             cHHHHHHHhhCCCeEEecCCceEEEEcC-CCcEEEEEEEEC---CCCcE-------EEEEcCEEEEeeCCccC
Confidence            3456677777 69999999999999864 578888887641   12321       37999999999997654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.75  E-value=0.096  Score=44.42  Aligned_cols=62  Identities=10%  Similarity=0.067  Sum_probs=44.3

Q ss_pred             HHHHHHHHHH-HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A-~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.|.+.. ++.||+|+++++|+++..+ ++. +.|.+..    .+|+       ..++.||.||+|+|.....
T Consensus       216 ~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~----~~g~-------~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          216 DVTNALVGALAKNEKMKFMTSTKVVGGTNN-GDS-VSLEVEG----KNGK-------RETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HHHHHHHHHHHHHTCCEEECSCEEEEEEEC-SSS-EEEEEEC----C----------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHhhcCCcEEEeCCEEEEEEEc-CCe-EEEEEEc----CCCc-------eEEEECCEEEECCCcccCC
Confidence            4566778888 8999999999999999875 333 3455431    1221       1479999999999988755

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.74  E-value=0.072  Score=42.09  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+..+..++.+.+++.|++++.++ |..+..+ ++.+. | +.+               +..+.++.+|+|+|.++..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~-~~~~~-v-~~~---------------~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           59 LTGPLLMERMHEHATKFETEIIFDH-INKVDLQ-NRPFR-L-NGD---------------NGEYTCDALIIATGASARY  118 (320)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECCC-EEEEECS-SSSEE-E-EES---------------SCEEEEEEEEECCCEEECC
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEee-eeEEEec-CCEEE-E-EeC---------------CCEEEcCEEEECCCCCcCC
Confidence            5678889999999999999999986 8888664 34332 3 332               3579999999999987543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.69  E-value=0.047  Score=45.16  Aligned_cols=63  Identities=22%  Similarity=0.357  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+++.+..++.||+++++++|+++.   ..   +|.+.+               |. +.+|.||.|+|.....  .+
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~---~~---~v~~~~---------------g~-i~~D~vi~a~G~~p~~--~l  238 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEAN---EE---GVLTNS---------------GF-IEGKVKICAIGIVPNV--DL  238 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEEC---SS---EEEETT---------------EE-EECSCEEEECCEEECC--HH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEE---ee---EEEECC---------------CE-EEcCEEEECcCCCcCH--HH
Confidence            3566788888999999999999999984   12   466654               44 9999999999988765  26


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       239 l~~~gl~  245 (367)
T 1xhc_A          239 ARRSGIH  245 (367)
T ss_dssp             HHHTTCC
T ss_pred             HHhCCCC
Confidence            6667765

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.51  E-value=0.052  Score=46.02  Aligned_cols=55  Identities=20%  Similarity=0.204  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHC--------CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          68 HVVKWLGEQAEAM--------GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        68 ~~d~~L~~~A~~~--------Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+.+.|++...+.        |++|+++++|++|..+ ++.|. |.+.+               |.+++|+.||+|.+.+
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~vI~a~~~~  269 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGVT-VKTED---------------NSVYSADYVMVSASLG  269 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCEE-EEETT---------------SCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcEE-EEECC---------------CCEEEcCEEEEecCHH
Confidence            4555666655543        7899999999999986 45555 77765               4589999999999964

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=94.47  E-value=0.075  Score=41.25  Aligned_cols=62  Identities=18%  Similarity=0.115  Sum_probs=47.4

Q ss_pred             EEEhHHHHHHHHHHHHHC-CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          63 VVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~-Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .++...+..++.+.+++. +++++.+ +|+++..+ ++. .-|.+.+               |.++.++.||+|+|..+.
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~-~~~-~~v~~~~---------------g~~~~~d~vviAtG~~~~  113 (297)
T 3fbs_A           52 GKAPGEIIAEARRQIERYPTIHWVEG-RVTDAKGS-FGE-FIVEIDG---------------GRRETAGRLILAMGVTDE  113 (297)
T ss_dssp             TCCHHHHHHHHHHHHTTCTTEEEEES-CEEEEEEE-TTE-EEEEETT---------------SCEEEEEEEEECCCCEEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEEe-EEEEEEEc-CCe-EEEEECC---------------CCEEEcCEEEECCCCCCC
Confidence            466788899999999987 7888764 89999876 333 3466654               357999999999998764


Q ss_pred             c
Q psy9486         142 L  142 (165)
Q Consensus       142 l  142 (165)
                      .
T Consensus       114 ~  114 (297)
T 3fbs_A          114 L  114 (297)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=94.33  E-value=0.053  Score=46.54  Aligned_cols=53  Identities=15%  Similarity=-0.038  Sum_probs=40.1

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+....+++.|++|+++++|++|..+ +++|. |.+.+               |.++.||.||+|.+...
T Consensus       216 ~l~~~l~~~lg~~i~~~~~V~~i~~~-~~~v~-v~~~~---------------g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          216 QVSERIMDLLGDRVKLERPVIYIDQT-RENVL-VETLN---------------HEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHHGGGEESSCCEEEEECS-SSSEE-EEETT---------------SCEEEESEEEECSCGGG
T ss_pred             HHHHHHHHHcCCcEEcCCeeEEEEEC-CCeEE-EEECC---------------CeEEEeCEEEECCCHHH
Confidence            33333445569999999999999885 55655 77764               45899999999999765

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.33  E-value=0.12  Score=40.44  Aligned_cols=67  Identities=16%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             HHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcC
Q psy9486          73 LGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFN  151 (165)
Q Consensus        73 L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~g  151 (165)
                      +.+++.+ .||++++++.++++..+  +++.+|.+.+.   .+|+.       .++.+|.||.|+|.....  .+.+.+|
T Consensus       195 ~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~~-------~~~~~D~vv~a~G~~p~~--~~~~~~g  260 (323)
T 3f8d_A          195 YVETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENL---KTGEI-------KELNVNGVFIEIGFDPPT--DFAKSNG  260 (323)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEET---TTCCE-------EEEECSEEEECCCEECCH--HHHHHTT
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEEC---CCCce-------EEEEcCEEEEEECCCCCh--hHHhhcC
Confidence            4455555 59999999999999763  67777877641   12321       279999999999987743  5667777


Q ss_pred             CC
Q psy9486         152 LR  153 (165)
Q Consensus       152 l~  153 (165)
                      +.
T Consensus       261 ~~  262 (323)
T 3f8d_A          261 IE  262 (323)
T ss_dssp             CC
T ss_pred             ee
Confidence            65

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=94.31  E-value=0.18  Score=42.80  Aligned_cols=77  Identities=18%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-  146 (165)
                      .+.+.+.+..++.||+|++++.|+++..++++..+.|.+.+.+   .|+.     .|.++.+|.||+|+|...... .| 
T Consensus       229 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~---~g~~-----~g~~~~~D~vi~a~G~~p~~~-~l~  299 (478)
T 3dk9_A          229 MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPG---RLPV-----MTMIPDVDCLLWAIGRVPNTK-DLS  299 (478)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTT---SCCE-----EEEEEEESEEEECSCEEESCT-TSC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCC---CCcc-----cceEEEcCEEEEeeccccCCC-CCC
Confidence            4566778888899999999999999987544523446665310   1210     024799999999999876542 22 


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       300 l~~~g~~  306 (478)
T 3dk9_A          300 LNKLGIQ  306 (478)
T ss_dssp             GGGGTCC
T ss_pred             chhcCCe
Confidence            3445654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.29  E-value=0.14  Score=43.52  Aligned_cols=75  Identities=11%  Similarity=0.053  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+.|.+..++.||+|++++.|+++..+ ++. +.|.+.+.   ..|+.       .++.+|.||+|+|..+....-.
T Consensus       210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~~---~~g~~-------~~i~~D~vv~a~G~~p~~~~l~  277 (464)
T 2eq6_A          210 PETAALLRRALEKEGIRVRTKTKAVGYEKK-KDG-LHVRLEPA---EGGEG-------EEVVVDKVLVAVGRKPRTEGLG  277 (464)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTE-EEEEEEET---TCCSC-------EEEEESEEEECSCEEESCTTSS
T ss_pred             HHHHHHHHHHHHhcCCEEEcCCEEEEEEEe-CCE-EEEEEeec---CCCce-------eEEEcCEEEECCCcccCCCCCC
Confidence            456677888889999999999999999765 343 33555320   11321       2799999999999887653211


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       278 l~~~g~~  284 (464)
T 2eq6_A          278 LEKAGVK  284 (464)
T ss_dssp             HHHHTCC
T ss_pred             hhhcCce
Confidence            3345553

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.27  E-value=0.095  Score=44.49  Aligned_cols=61  Identities=18%  Similarity=0.120  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+..++.||+|+++++|+++..+ ++.+ .|.+.+    .+|        ..++.+|.||+|+|.....
T Consensus       222 ~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~-~~~~-~v~~~~----~~g--------~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          222 QVAKEAQKILTKQGLKILLGARVTGTEVK-NKQV-TVKFVD----AEG--------EKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCE-EEEEES----SSE--------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEc-CCEE-EEEEEe----CCC--------cEEEECCEEEEeeCCcccC
Confidence            45667777888899999999999999875 3443 355443    111        0479999999999987654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=94.26  E-value=0.085  Score=42.53  Aligned_cols=53  Identities=9%  Similarity=0.152  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ...+...+++.|++|+++++|++|..+ ++.+. |.+.+               |..+.||.||+|+.+.
T Consensus       112 ~~l~~~l~~~~g~~i~~~~~V~~i~~~-~~~~~-v~~~~---------------g~~~~ad~vV~A~p~~  164 (342)
T 3qj4_A          112 SSIIKHYLKESGAEVYFRHRVTQINLR-DDKWE-VSKQT---------------GSPEQFDLIVLTMPVP  164 (342)
T ss_dssp             THHHHHHHHHHTCEEESSCCEEEEEEC-SSSEE-EEESS---------------SCCEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEEc-CCEEE-EEECC---------------CCEEEcCEEEECCCHH
Confidence            334344444569999999999999986 44443 66654               3458999999999853

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=93.87  E-value=0.11  Score=44.99  Aligned_cols=71  Identities=11%  Similarity=0.092  Sum_probs=52.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCC------cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG------SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF  134 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g------~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~  134 (165)
                      .+..+|.+|.++|...|++.+..|.+++.|+++...+++      ...-|.+.+.   .+|+       ..++.|+.||+
T Consensus       139 ~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~---~~g~-------~~~~~ar~vVl  208 (501)
T 4b63_A          139 TFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNV---ETGE-------ISARRTRKVVI  208 (501)
T ss_dssp             CSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEET---TTCC-------EEEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecC---CCce-------EEEEEeCEEEE
Confidence            456789999999999999999889999999999885432      2344666541   1232       24799999999


Q ss_pred             cccCCcc
Q psy9486         135 AEGCHGH  141 (165)
Q Consensus       135 A~G~~s~  141 (165)
                      |+|....
T Consensus       209 atG~~P~  215 (501)
T 4b63_A          209 AIGGTAK  215 (501)
T ss_dssp             CCCCEEC
T ss_pred             CcCCCCC
Confidence            9996543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=93.76  E-value=0.12  Score=42.85  Aligned_cols=54  Identities=17%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+.+.+.+..++.||+++++++|+++.-   +   +|.+.+               |.++.+|.||+|.|....
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~---~---~v~~~~---------------g~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE---H---EIVDEK---------------GNTIPADITILLPPYTGN  271 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS---S---EEEETT---------------SCEEECSEEEEECCEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC---C---eEEECC---------------CCEEeeeEEEECCCCCcc
Confidence            46777888889999999999999999842   2   366654               468999999999998763

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.65  E-value=0.074  Score=41.28  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHh
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                      +...+.+..++.||+++. +.|+++.-  ++   +|.+.+               |.++.+|.||.|+|.....  .+.+
T Consensus       176 ~~~~~~~~l~~~gv~i~~-~~v~~i~~--~~---~v~~~~---------------g~~~~~D~vi~a~G~~p~~--~~~~  232 (297)
T 3fbs_A          176 PDADQHALLAARGVRVET-TRIREIAG--HA---DVVLAD---------------GRSIALAGLFTQPKLRITV--DWIE  232 (297)
T ss_dssp             CCHHHHHHHHHTTCEEEC-SCEEEEET--TE---EEEETT---------------SCEEEESEEEECCEEECCC--SCHH
T ss_pred             CCHHHHHHHHHCCcEEEc-ceeeeeec--CC---eEEeCC---------------CCEEEEEEEEEccCcccCc--hhHH
Confidence            566778888899999996 88988853  23   566654               4589999999999987543  2444


Q ss_pred             hcCCC
Q psy9486         149 RFNLR  153 (165)
Q Consensus       149 ~~gl~  153 (165)
                      .+++.
T Consensus       233 ~~g~~  237 (297)
T 3fbs_A          233 KLGCA  237 (297)
T ss_dssp             HHTCC
T ss_pred             hcCCc
Confidence            46654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=93.28  E-value=0.34  Score=41.28  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-  146 (165)
                      .+.+.+.+..++.||+|+++++|.++..+ ++. +.|.+.+.   .+|+       ..++.+|.||+|+|...... .| 
T Consensus       240 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~v~~~~~---~~g~-------~~~i~~D~Vi~a~G~~p~~~-~l~  306 (491)
T 3urh_A          240 EVAKQLQRMLTKQGIDFKLGAKVTGAVKS-GDG-AKVTFEPV---KGGE-------ATTLDAEVVLIATGRKPSTD-GLG  306 (491)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTE-EEEEEEET---TSCC-------CEEEEESEEEECCCCEECCT-TSC
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEEe-CCE-EEEEEEec---CCCc-------eEEEEcCEEEEeeCCccCCC-ccC
Confidence            45667778888899999999999999875 343 33554420   1132       14799999999999876552 22 


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       307 l~~~g~~  313 (491)
T 3urh_A          307 LAKAGVV  313 (491)
T ss_dssp             HHHHTCC
T ss_pred             chhcCce
Confidence            3345553

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.24  E-value=0.22  Score=41.98  Aligned_cols=61  Identities=11%  Similarity=0.170  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+.+..++.||+|+++++|+++..+ ++. +.|.+..     +|       .+.++.+|.||+|+|.....
T Consensus       212 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~-----~g-------~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          212 QMAAIIKKRLKKKGVEVVTNALAKGAEER-EDG-VTVTYEA-----NG-------ETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTE-EEEEEEE-----TT-------EEEEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCe-EEEEEEe-----CC-------ceeEEEcCEEEECcCCCccc
Confidence            45667788888999999999999999765 333 3344431     11       03579999999999988754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=93.17  E-value=0.23  Score=39.38  Aligned_cols=60  Identities=20%  Similarity=0.130  Sum_probs=43.5

Q ss_pred             HHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          71 KWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        71 ~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+++.+ .||+|+++++++++..  ++++.+|.+.+.   .+|+.       .++.+|.||+|+|.....
T Consensus       191 ~~~~~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~---~~g~~-------~~i~~D~vi~a~G~~p~~  251 (325)
T 2q7v_A          191 KVAQARAFANPKMKFIWDTAVEEIQG--ADSVSGVKLRNL---KTGEV-------SELATDGVFIFIGHVPNT  251 (325)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEET---TTCCE-------EEEECSEEEECSCEEESC
T ss_pred             hHHHHHHHhcCCceEecCCceEEEcc--CCcEEEEEEEEC---CCCcE-------EEEEcCEEEEccCCCCCh
Confidence            445666655 6999999999999976  467778877531   13321       379999999999977643

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=93.12  E-value=0.084  Score=44.43  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEE---ccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT---GDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~---~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +.-+......-++.+|++|+++++|++|..+ +++ +.|.+   .+               |.+++|+.||+|.+.+.
T Consensus       234 ~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~-~~~-~~v~~~~~~~---------------g~~~~ad~vV~a~~~~~  294 (478)
T 2ivd_A          234 DGGLQVLIDALAASLGDAAHVGARVEGLARE-DGG-WRLIIEEHGR---------------RAELSVAQVVLAAPAHA  294 (478)
T ss_dssp             TTCTHHHHHHHHHHHGGGEESSEEEEEEECC---C-CEEEEEETTE---------------EEEEECSEEEECSCHHH
T ss_pred             CCCHHHHHHHHHHHhhhhEEcCCEEEEEEec-CCe-EEEEEeecCC---------------CceEEcCEEEECCCHHH
Confidence            3334444344445568899999999999886 344 46776   33               35799999999999765

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=93.11  E-value=0.14  Score=42.50  Aligned_cols=42  Identities=14%  Similarity=0.295  Sum_probs=33.7

Q ss_pred             CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          82 VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        82 v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ++|+++++|++|..+ ++. +.|.+.+               |..+.|+.||+|...+.
T Consensus       248 ~~i~~~~~V~~i~~~-~~~-~~v~~~~---------------g~~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHS-GSC-YSLELDN---------------GVTLDADSVIVTAPHKA  289 (470)
T ss_dssp             EEEECSCCEEEEEEC-SSS-EEEEESS---------------SCEEEESEEEECSCHHH
T ss_pred             CEEEeCCceEEEEEc-CCe-EEEEECC---------------CCEEECCEEEECCCHHH
Confidence            799999999999986 344 3477764               45799999999998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.02  E-value=0.058  Score=46.30  Aligned_cols=78  Identities=19%  Similarity=0.166  Sum_probs=48.8

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEcccc---ccCCCCCCCCCCcC--eEEEcCEEEEcccCCcccchHHHh
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG---IAKDGSPKDTFARG--MELHAKVTIFAEGCHGHLTKSLSS  148 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g---~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l~~~l~~  148 (165)
                      .+.+++.||++++++.+.++.-  +++|.+|++.++-   -|.+|+....+.+|  .++.||.||+|.|........+.+
T Consensus       309 ~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~  386 (456)
T 2vdc_G          309 VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFD  386 (456)
T ss_dssp             HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHH
T ss_pred             HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcc
Confidence            4568889999999999999974  4677666554210   11234322111122  469999999999986533222556


Q ss_pred             hcCCC
Q psy9486         149 RFNLR  153 (165)
Q Consensus       149 ~~gl~  153 (165)
                      .+|+.
T Consensus       387 ~~gl~  391 (456)
T 2vdc_G          387 EPELK  391 (456)
T ss_dssp             STTSC
T ss_pred             cCCee
Confidence            66664

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=92.93  E-value=0.26  Score=38.64  Aligned_cols=61  Identities=13%  Similarity=0.037  Sum_probs=43.3

Q ss_pred             HHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          71 KWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        71 ~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+++.+ .||++++++.+.++..+ ++++.+|.+.+.   .+|+.       .++.+|.||+|+|.....
T Consensus       182 ~~~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~-------~~i~~D~vi~a~G~~p~~  243 (311)
T 2q0l_A          182 PITLEHAKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNT---ATNEK-------RELVVPGFFIFVGYDVNN  243 (311)
T ss_dssp             HHHHHHHHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEET---TTCCE-------EEEECSEEEECSCEEECC
T ss_pred             HHHHHHHhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEec---CCCce-------EEEecCEEEEEecCccCh
Confidence            345566654 79999999999999765 466767776521   12321       379999999999987643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.75  E-value=0.38  Score=40.66  Aligned_cols=61  Identities=23%  Similarity=0.290  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+-+++.+..++.||++++++.|+++..+ ++.+ .|.+.+     +|+       +.++.+|.||.|+|.....
T Consensus       213 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~-----~g~-------~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          213 DVSKEIEKQFKKLGVTILTATKVESIADG-GSQV-TVTVTK-----DGV-------AQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCEEEEEEEC-SSCE-EEEEES-----SSC-------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEc-CCeE-EEEEEc-----CCc-------eEEEEcCEEEECCCCCccC
Confidence            45567788888999999999999999764 3333 344431     121       1479999999999987754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=92.74  E-value=0.14  Score=42.79  Aligned_cols=47  Identities=21%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             HHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          76 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        76 ~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .++++|++|+++++|++|..+ ++..+.|.+ +               |.++.||.||+|.+..
T Consensus       221 l~~~lg~~i~~~~~V~~i~~~-~~~~v~v~~-~---------------~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          221 MAEALGDDVFLNAPVRTVKWN-ESGATVLAD-G---------------DIRVEASRVILAVPPN  267 (453)
T ss_dssp             HHHHHGGGEECSCCEEEEEEE-TTEEEEEET-T---------------TEEEEEEEEEECSCGG
T ss_pred             HHHhcCCcEEcCCceEEEEEe-CCceEEEEE-C---------------CeEEEcCEEEEcCCHH
Confidence            345569999999999999886 444123554 2               3589999999999976

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=92.55  E-value=0.26  Score=40.72  Aligned_cols=51  Identities=14%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .....+++.+.+|+++++|++|..+ +++|. |.+.+               | ++.||.||+|.+.+.
T Consensus       208 l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v~-v~~~~---------------g-~~~ad~Vv~a~~~~~  258 (424)
T 2b9w_A          208 MFEHLNATLEHPAERNVDITRITRE-DGKVH-IHTTD---------------W-DRESDVLVLTVPLEK  258 (424)
T ss_dssp             HHHHHHHHSSSCCBCSCCEEEEECC-TTCEE-EEESS---------------C-EEEESEEEECSCHHH
T ss_pred             HHHHHHHhhcceEEcCCEEEEEEEE-CCEEE-EEECC---------------C-eEEcCEEEECCCHHH
Confidence            3334455678889999999999885 55655 77764               3 599999999999764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.51  E-value=0.21  Score=42.22  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+-+.|.+..++.||+|+++++|.++..+ ++. +.|.+.+.   .+|+       +.++.+|.||+|+|.....
T Consensus       219 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~~---~~g~-------~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          219 EIRKQFQRSLEKQGMKFKLKTKVVGVDTS-GDG-VKLTVEPS---AGGE-------QTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             HHHHHHHHHHHHSSCCEECSEEEEEEECS-SSS-EEEEEEES---SSCC-------CEEEEESEEECCCCEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCe-EEEEEEec---CCCc-------ceEEECCEEEECCCCCcCC
Confidence            45667788888999999999999999764 333 33444310   1221       2579999999999988754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=92.43  E-value=0.22  Score=41.92  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             EEEEhHHHHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          62 YVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        62 ~~i~r~~~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..-+.-+..+...-++.++ ++|+++++|++|..+ ++.+ .|.+.+               | .+.|+.||+|.+.+.
T Consensus       228 ~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~-~~~~-~v~~~~---------------g-~~~ad~vV~a~p~~~  289 (475)
T 3lov_A          228 FLSLETGLESLIERLEEVLERSEIRLETPLLAISRE-DGRY-RLKTDH---------------G-PEYADYVLLTIPHPQ  289 (475)
T ss_dssp             EEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEEE-TTEE-EEECTT---------------C-CEEESEEEECSCHHH
T ss_pred             EEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEEe-CCEE-EEEECC---------------C-eEECCEEEECCCHHH
Confidence            33333434444333344444 799999999999886 4443 366654               4 699999999999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.42  E-value=0.24  Score=42.35  Aligned_cols=67  Identities=16%  Similarity=0.134  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHH--------------CCCEEecCCceeEEEEcCCC-cEEEEEEccccccC---------CCCCCCCCCcC
Q psy9486          69 VVKWLGEQAEA--------------MGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAK---------DGSPKDTFARG  124 (165)
Q Consensus        69 ~d~~L~~~A~~--------------~Gv~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~---------~g~~~~~~~~g  124 (165)
                      +.+.|.+.+++              .|++|++++.+.+|.-++++ +|.+|++..+-.+.         +|+       .
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~-------~  317 (460)
T 1cjc_A          245 LMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGD-------V  317 (460)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEE-------E
T ss_pred             HHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCc-------e
Confidence            44566666766              89999999999999764336 88888765311100         111       1


Q ss_pred             eEEEcCEEEEcccCCccc
Q psy9486         125 MELHAKVTIFAEGCHGHL  142 (165)
Q Consensus       125 ~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++.|+.||.|.|..+..
T Consensus       318 ~~i~~d~Vi~a~G~~p~~  335 (460)
T 1cjc_A          318 EDLPCGLVLSSIGYKSRP  335 (460)
T ss_dssp             EEEECSEEEECCCEECCC
T ss_pred             EEEEcCEEEECCCCCCCC
Confidence            479999999999988754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=92.37  E-value=0.22  Score=46.95  Aligned_cols=76  Identities=17%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcC--eEEEcCEEEEcccCCcccchHHHhhc-
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG--MELHAKVTIFAEGCHGHLTKSLSSRF-  150 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g--~~i~Ak~VI~A~G~~s~l~~~l~~~~-  150 (165)
                      .+.+++.||+|++++.+.++..+ +++|.+|++.++-.+.+|..+.  ..|  .++.||.||+|.|..... ..+.+.+ 
T Consensus       377 ~~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~--~~g~~~~i~aD~Vi~A~G~~~~~-~~l~~~~~  452 (1025)
T 1gte_A          377 VELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNE--DEDQIVHLKADVVISAFGSVLRD-PKVKEALS  452 (1025)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEE--EEEEEEEEECSEEEECSCEECCC-HHHHHHTT
T ss_pred             HHHHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCccc--CCCceEEEECCEEEECCCCCCCc-hhhhhccc
Confidence            36778899999999999999874 6889888775322223442110  011  368999999999985432 2344432 


Q ss_pred             CCC
Q psy9486         151 NLR  153 (165)
Q Consensus       151 gl~  153 (165)
                      |+.
T Consensus       453 gl~  455 (1025)
T 1gte_A          453 PIK  455 (1025)
T ss_dssp             TSC
T ss_pred             Cce
Confidence            543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.32  E-value=0.44  Score=40.63  Aligned_cols=74  Identities=14%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-  146 (165)
                      .+.+.+.+..++.||++++++.+.++...+++.+ .|...+.   .+|+.       .++.+|.||+|+|...... .+ 
T Consensus       226 ~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~---~~g~~-------~~~~~D~vi~a~G~~p~~~-~l~  293 (488)
T 3dgz_A          226 QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDH---ASGKE-------DTGTFDTVLWAIGRVPETR-TLN  293 (488)
T ss_dssp             HHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEET---TTTEE-------EEEEESEEEECSCEEESCG-GGT
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeC---CCCee-------EEEECCEEEEcccCCcccC-cCC
Confidence            4667778888899999999999999977434443 3544431   11211       2589999999999876552 22 


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       294 l~~~g~~  300 (488)
T 3dgz_A          294 LEKAGIS  300 (488)
T ss_dssp             GGGGTCC
T ss_pred             ccccCcE
Confidence            3445554

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.29  E-value=0.067  Score=48.04  Aligned_cols=57  Identities=12%  Similarity=0.032  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ...|.+.+++.||+|+++++|+++.-  ++  ..+....     ++       .+.++.||.||+|+|.....
T Consensus       570 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~~--~~v~~~~-----~~-------~~~~i~aD~VV~A~G~~p~~  626 (690)
T 3k30_A          570 VNRIQRRLIENGVARVTDHAVVAVGA--GG--VTVRDTY-----AS-------IERELECDAVVMVTARLPRE  626 (690)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEET--TE--EEEEETT-----TC-------CEEEEECSEEEEESCEEECC
T ss_pred             HHHHHHHHHHCCCEEEcCcEEEEEEC--Ce--EEEEEcc-----CC-------eEEEEECCEEEECCCCCCCh
Confidence            45677888899999999999999853  22  1233221     11       13579999999999987654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.29  E-value=0.32  Score=40.94  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHH
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLS  147 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~  147 (165)
                      .+.+.+.+..++. |++++++.|.++..+  +++..|.+.                +.++.||.||+|+|.....  .+.
T Consensus       191 ~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~v~~~----------------g~~i~~D~Vv~a~G~~p~~--~l~  249 (449)
T 3kd9_A          191 EVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEKVVTD----------------AGEYKAELVILATGIKPNI--ELA  249 (449)
T ss_dssp             HHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCEEEET----------------TEEEECSEEEECSCEEECC--HHH
T ss_pred             HHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEEEEeC----------------CCEEECCEEEEeeCCccCH--HHH
Confidence            4456667777778 999999999998643  355455443                3589999999999988654  355


Q ss_pred             hhcCCC
Q psy9486         148 SRFNLR  153 (165)
Q Consensus       148 ~~~gl~  153 (165)
                      +..|+.
T Consensus       250 ~~~gl~  255 (449)
T 3kd9_A          250 KQLGVR  255 (449)
T ss_dssp             HHTTCC
T ss_pred             HhCCcc
Confidence            667764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.18  E-value=0.32  Score=38.25  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCC
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~  153 (165)
                      .+++++.||++++++.+.++.-+  +.+.+|.+.+.   .+|+       +.++.+|.||+|+|.....  .+.+.+++.
T Consensus       196 ~~~l~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~-------~~~~~~D~vv~a~G~~p~~--~~~~~~~~~  261 (332)
T 3lzw_A          196 VENLHASKVNVLTPFVPAELIGE--DKIEQLVLEEV---KGDR-------KEILEIDDLIVNYGFVSSL--GPIKNWGLD  261 (332)
T ss_dssp             HHHHHHSSCEEETTEEEEEEECS--SSCCEEEEEET---TSCC-------EEEEECSEEEECCCEECCC--GGGGGSSCC
T ss_pred             HHHHhcCCeEEEeCceeeEEecC--CceEEEEEEec---CCCc-------eEEEECCEEEEeeccCCCc--hHHhhcCcc
Confidence            45578899999999999999764  33566766541   1221       3579999999999987744  345556654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=92.09  E-value=0.33  Score=38.43  Aligned_cols=61  Identities=16%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             HHHHHHH-HHCCCEEecCCceeEEEEcCCC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          71 KWLGEQA-EAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        71 ~~L~~~A-~~~Gv~i~~~~~v~~i~~~~~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+++ ++.||+|++++.+.++..+ ++  ++.+|.+.+.   .+|+       ..++.+|.||+|+|.....
T Consensus       198 ~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~~  261 (333)
T 1vdc_A          198 KIMQQRALSNPKIDVIWNSSVVEAYGD-GERDVLGGLKVKNV---VTGD-------VSDLKVSGLFFAIGHEPAT  261 (333)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEES-SSSSSEEEEEEEET---TTCC-------EEEEECSEEEECSCEEESC
T ss_pred             HHHHHHHHhCCCeeEecCCceEEEeCC-CCccceeeEEEEec---CCCc-------eEEEecCEEEEEeCCccch
Confidence            3445444 5689999999999999874 33  7777777531   1232       1479999999999987654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=91.86  E-value=0.13  Score=44.08  Aligned_cols=69  Identities=16%  Similarity=0.295  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHH-HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          68 HVVKWLGEQAE-AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        68 ~~d~~L~~~A~-~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ....++...++ ..+..|++++.|.+++++ +++++||....    .++        ...+.|+.||+|.|+-.  +.+|
T Consensus       211 ~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~-~~~a~gv~~~~----~~~--------~~~~~a~~VILsAGai~--SP~L  275 (526)
T 3t37_A          211 AADAWLTKAVRGRKNLTILTGSRVRRLKLE-GNQVRSLEVVG----RQG--------SAEVFADQIVLCAGALE--SPAL  275 (526)
T ss_dssp             HHHHHSCHHHHTCTTEEEECSCEEEEEEEE-TTEEEEEEEEE----TTE--------EEEEEEEEEEECSHHHH--HHHH
T ss_pred             cccccccccccCCCCeEEEeCCEEEEEEec-CCeEEEEEEEe----cCc--------eEEEeecceEEcccccC--Ccch
Confidence            44445444433 468999999999999997 78999998875    222        14689999999999644  4455


Q ss_pred             HhhcC
Q psy9486         147 SSRFN  151 (165)
Q Consensus       147 ~~~~g  151 (165)
                      +..-|
T Consensus       276 Ll~SG  280 (526)
T 3t37_A          276 LMRSG  280 (526)
T ss_dssp             HHHTT
T ss_pred             hhhcc
Confidence            44433

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=91.77  E-value=0.61  Score=40.95  Aligned_cols=59  Identities=17%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLT  143 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~  143 (165)
                      ++-+.+.+..++.|+++++++.+..+... ++.+ -|.+.+               +..+.++.|++|.|......
T Consensus       264 ei~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~~-~v~~~~---------------~~~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          264 QCAVKVKLYMEEQGVMFKNGILPKKLTKM-DDKI-LVEFSD---------------KTSELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCCEEEEEEE-TTEE-EEEETT---------------SCEEEESEEEECSCEEESCG
T ss_pred             hHHHHHHHHHHhhcceeecceEEEEEEec-CCeE-EEEEcC---------------CCeEEEEEEEEcccccCCcc
Confidence            34556777888899999999999999875 4443 355654               34788999999999887763

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=91.58  E-value=0.43  Score=39.99  Aligned_cols=50  Identities=12%  Similarity=-0.007  Sum_probs=35.9

Q ss_pred             CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          80 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        80 ~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .||+|++++.|+++..+ ++. +.|.+.+.   .+|+.       .++.||.||+|+|....
T Consensus       329 ~~v~i~~~~~v~~v~~~-~~~-~~v~~~~~---~~g~~-------~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATAT-AQG-IELALRDA---GSGEL-------SVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEE-TTE-EEEEEEET---TTCCE-------EEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEec-CCE-EEEEEEEc---CCCCe-------EEEECCEEEEeeCCCCC
Confidence            69999999999999875 333 34555431   13322       35999999999998765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=91.47  E-value=0.35  Score=41.16  Aligned_cols=72  Identities=11%  Similarity=-0.007  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-  146 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-  146 (165)
                      .+.+.+.+..++.||+|++++.|.++..+ ++ .+.|.+.+.    ++       .|.++.||.||+|+|...... -+ 
T Consensus       227 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~----~~-------~g~~~~~D~vv~a~G~~p~~~-~l~  292 (482)
T 1ojt_A          227 DLVKVWQKQNEYRFDNIMVNTKTVAVEPK-ED-GVYVTFEGA----NA-------PKEPQRYDAVLVAAGRAPNGK-LIS  292 (482)
T ss_dssp             HHHHHHHHHHGGGEEEEECSCEEEEEEEE-TT-EEEEEEESS----SC-------CSSCEEESCEEECCCEEECGG-GTT
T ss_pred             HHHHHHHHHHHhcCCEEEECCEEEEEEEc-CC-eEEEEEecc----CC-------CceEEEcCEEEECcCCCcCCC-CCC
Confidence            45567778888899999999999999764 33 244555421    11       024688999999999887542 12 


Q ss_pred             HhhcCCC
Q psy9486         147 SSRFNLR  153 (165)
Q Consensus       147 ~~~~gl~  153 (165)
                      .+..|+.
T Consensus       293 ~~~~gl~  299 (482)
T 1ojt_A          293 AEKAGVA  299 (482)
T ss_dssp             GGGTTCC
T ss_pred             hhhcCce
Confidence            3445654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.38  E-value=0.22  Score=42.24  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+++.+..++.||++++++.|+++..   +. +.+...      +|+.       .++.+|.||+|+|.....
T Consensus       212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~-v~v~~~------~G~~-------~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          212 SELTAPVAESLKKLGIALHLGHSVEGYEN---GC-LLANDG------KGGQ-------LRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEET---TE-EEEECS------SSCC-------CEECCSCEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEe---CC-EEEEEC------CCce-------EEEECCEEEECcCCCcCC
Confidence            35566778888899999999999999853   33 234321      2321       479999999999988755

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=91.23  E-value=0.57  Score=40.49  Aligned_cols=60  Identities=12%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+-+++.+..++.||+|++++.|+++.  +++.+..+...      +|+..     +.+|.|+.||.|+|...
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~------dg~~~-----~~~i~ad~viwa~Gv~~  332 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHE------DGKIT-----EETIPYGTLIWATGNKA  332 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECT------TSCEE-----EEEEECSEEEECCCEEC
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEec------Ccccc-----eeeeccCEEEEccCCcC
Confidence            344556666778999999999999983  23332322222      34321     24799999999999765

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=91.15  E-value=0.49  Score=37.37  Aligned_cols=61  Identities=13%  Similarity=0.049  Sum_probs=40.0

Q ss_pred             EEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          64 VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ++...+.+.+.+++.+.+...+....+..+...+++. .-|.+.+               |.++.+|.||+|+|+..
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------g~~~~a~~liiATGs~p  117 (304)
T 4fk1_A           57 IKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGL-FEIVTKD---------------HTKYLAERVLLATGMQE  117 (304)
T ss_dssp             BCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSC-EEEEETT---------------CCEEEEEEEEECCCCEE
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCc-EEEEECC---------------CCEEEeCEEEEccCCcc
Confidence            4455666666777777665555555666665543443 3355554               46899999999999764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=91.07  E-value=0.44  Score=40.23  Aligned_cols=61  Identities=11%  Similarity=0.075  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhh
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSR  149 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~  149 (165)
                      -+.+.+..++.||++++++.|+++.   ..   .|.+.+               |.++.+|.||.|.|.....  .+.+.
T Consensus       191 ~~~~~~~l~~~gV~i~~~~~v~~~~---~~---~v~~~~---------------g~~~~~D~vl~a~G~~Pn~--~~~~~  247 (437)
T 4eqs_A          191 NQPILDELDKREIPYRLNEEINAIN---GN---EITFKS---------------GKVEHYDMIIEGVGTHPNS--KFIES  247 (437)
T ss_dssp             GHHHHHHHHHTTCCEEESCCEEEEE---TT---EEEETT---------------SCEEECSEEEECCCEEESC--GGGTT
T ss_pred             HHHHHHHhhccceEEEeccEEEEec---CC---eeeecC---------------CeEEeeeeEEEEeceecCc--HHHHh
Confidence            4567777888999999999998873   22   345554               4689999999999987644  35555


Q ss_pred             cCCC
Q psy9486         150 FNLR  153 (165)
Q Consensus       150 ~gl~  153 (165)
                      .|+.
T Consensus       248 ~gl~  251 (437)
T 4eqs_A          248 SNIK  251 (437)
T ss_dssp             SSCC
T ss_pred             hhhh
Confidence            6764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=90.97  E-value=0.4  Score=39.93  Aligned_cols=48  Identities=13%  Similarity=0.126  Sum_probs=36.7

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+..++.|++++++++|+++..+ +.   -|.+.+               |.++.+|.+|+|+|+..
T Consensus        69 ~~~~~~~~i~~~~~~~V~~id~~-~~---~v~~~~---------------g~~~~yd~lvlAtG~~p  116 (385)
T 3klj_A           69 NDWYEKNNIKVITSEFATSIDPN-NK---LVTLKS---------------GEKIKYEKLIIASGSIA  116 (385)
T ss_dssp             HHHHHHTTCEEECSCCEEEEETT-TT---EEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             HHHHHHCCCEEEeCCEEEEEECC-CC---EEEECC---------------CCEEECCEEEEecCCCc
Confidence            44456789999999999999764 33   355554               45899999999999754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=90.62  E-value=0.41  Score=37.27  Aligned_cols=60  Identities=18%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC-CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~-g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .++...+..++.+.+++.|++++.+ +|.++ .+++ +.+ -|....              .+ ++.++.+|+|+|...
T Consensus        58 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~-~v~~~~--------------~~-~~~~d~lvlAtG~~~  118 (315)
T 3r9u_A           58 VMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSF-TIKLEG--------------GK-TELAKAVIVCTGSAP  118 (315)
T ss_dssp             CBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCE-EEEETT--------------SC-EEEEEEEEECCCEEE
T ss_pred             CCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcE-EEEEec--------------CC-EEEeCEEEEeeCCCC
Confidence            3567889999999999999999988 89999 7521 332 222322              13 799999999999754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.21  E-value=0.45  Score=41.17  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=44.6

Q ss_pred             HHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          71 KWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        71 ~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      ..+.++.++ .||++++++.++++.-+ ++++.+|.+.+.   .+|+.       .++.++.||+|.|....
T Consensus       394 ~~l~~~l~~~~gV~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~-------~~i~~D~vi~a~G~~pn  454 (521)
T 1hyu_A          394 QVLQDKVRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDR---VSGDI-------HSVALAGIFVQIGLLPN  454 (521)
T ss_dssp             HHHHHHHTTCTTEEEECSEEEEEEEEC-SSSEEEEEEEET---TTCCE-------EEEECSEEEECCCEEES
T ss_pred             HHHHHHHhcCCCcEEEeCCEEEEEEcC-CCcEEEEEEEeC---CCCce-------EEEEcCEEEECcCCCCC
Confidence            456666777 59999999999999764 578888887641   12321       36999999999997653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=89.83  E-value=1  Score=38.51  Aligned_cols=61  Identities=10%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+-+.+.+..++. |+|++++.|+++..+ ++.+. |.+.+    .+|+.       .++.+|.||+|+|.....
T Consensus       216 ~~~~~l~~~l~~~-V~i~~~~~v~~i~~~-~~~v~-v~~~~----~~G~~-------~~i~~D~Vi~a~G~~p~~  276 (492)
T 3ic9_A          216 EMKRYAEKTFNEE-FYFDAKARVISTIEK-EDAVE-VIYFD----KSGQK-------TTESFQYVLAATGRKANV  276 (492)
T ss_dssp             HHHHHHHHHHHTT-SEEETTCEEEEEEEC-SSSEE-EEEEC----TTCCE-------EEEEESEEEECSCCEESC
T ss_pred             HHHHHHHHHHhhC-cEEEECCEEEEEEEc-CCEEE-EEEEe----CCCce-------EEEECCEEEEeeCCccCC
Confidence            4555666666666 999999999999875 45544 44432    13321       479999999999987654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=89.63  E-value=0.24  Score=41.82  Aligned_cols=52  Identities=10%  Similarity=0.030  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+.+.|++.+++.|++|.++++|++|..+ +++   |.+.+               |.++.|+.||.+.-
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~~---v~~~~---------------G~~~~ad~vI~t~P  273 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNAN-NKT---VTLQD---------------GTTIGYKKLVSTMA  273 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETT-TTE---EEETT---------------SCEEEEEEEEECSC
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEcc-CCE---EEEcC---------------CCEEECCEEEECCC
Confidence            456777888888899999999999999875 443   44554               46899999997654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=89.44  E-value=0.65  Score=39.72  Aligned_cols=55  Identities=9%  Similarity=-0.015  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          69 VVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        69 ~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      +...+..-++.++ ++|+++++|++|..+ ++..+.|.+.+               |..+.||.||.|.+..
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~-~~~~v~v~~~~---------------g~~~~ad~VI~t~p~~  256 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITRE-PSKNVTVNCED---------------GTVYNADYVIITVPQS  256 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEEC-TTSCEEEEETT---------------SCEEEEEEEEECCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEc-CCCeEEEEECC---------------CcEEECCEEEECCCHH
Confidence            4444333444443 679999999999885 23335677765               4579999999999854

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=89.34  E-value=0.74  Score=38.77  Aligned_cols=50  Identities=16%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             HHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          76 QAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        76 ~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      -+++++ ++|+++++|++|..+ +++|. |.+.+      |..      ...++||.||+|....
T Consensus       245 l~~~l~~~~i~~~~~V~~i~~~-~~~v~-v~~~~------g~~------~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          245 FQDRIGTDNIVFGAEVTSMKNV-SEGVT-VEYTA------GGS------KKSITADYAICTIPPH  295 (489)
T ss_dssp             HHHHHCGGGEETTCEEEEEEEE-TTEEE-EEEEE------TTE------EEEEEESEEEECSCHH
T ss_pred             HHHhcCCCeEEECCEEEEEEEc-CCeEE-EEEec------CCe------EEEEECCEEEECCCHH
Confidence            334455 889999999999986 45544 55543      100      1479999999999865

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=89.24  E-value=0.42  Score=40.16  Aligned_cols=49  Identities=14%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+++.|++++.++.|+.+..+  ++  .|.+.+               |.++.++.+|+|+|.+...
T Consensus        68 ~~~~~~gv~~~~~~~v~~i~~~--~~--~v~~~~---------------g~~~~~d~lviAtG~~p~~  116 (431)
T 1q1r_A           68 DAYAAQNIQLLGGTQVTAINRD--RQ--QVILSD---------------GRALDYDRLVLATGGRPRP  116 (431)
T ss_dssp             HHHHHTTEEEECSCCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCEEECC
T ss_pred             HHHHhCCCEEEeCCEEEEEECC--CC--EEEECC---------------CCEEECCEEEEcCCCCccC
Confidence            3446789999999999998653  33  355543               3579999999999987643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=89.17  E-value=0.29  Score=40.19  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHH----HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQA----EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A----~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..|+..+.+.+    ++.|+++++++.+..+..+.++  ..|.+.+               |.++.++.||.|.|...  
T Consensus       198 ~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~--~~v~~~~---------------g~~i~~D~vi~~~g~~~--  258 (401)
T 3vrd_B          198 AQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA--MTVETSF---------------GETFKAAVINLIPPQRA--  258 (401)
T ss_dssp             HHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT--TEEEETT---------------SCEEECSEEEECCCEEE--
T ss_pred             ccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc--eEEEcCC---------------CcEEEeeEEEEecCcCC--
Confidence            44565555544    4679999999999988775333  2466665               56899999999999765  


Q ss_pred             chHHHhhcCCC
Q psy9486         143 TKSLSSRFNLR  153 (165)
Q Consensus       143 ~~~l~~~~gl~  153 (165)
                       ..+.+..+|.
T Consensus       259 -~~~~~~~gl~  268 (401)
T 3vrd_B          259 -GKIAQSASLT  268 (401)
T ss_dssp             -CHHHHHTTCC
T ss_pred             -chhHhhcccc
Confidence             3556666763

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=88.67  E-value=0.67  Score=39.06  Aligned_cols=56  Identities=14%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+.+.+.+++.|++++.++.+.   .+ .+. +-|.+.+      |+.       .++.++.+|+|+|+++..
T Consensus        93 l~~~l~~~~~~~gv~~~~g~~~~---id-~~~-v~V~~~~------G~~-------~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           93 RVAGVHFLMKKNKITEIHGYGTF---AD-ANT-LLVDLND------GGT-------ESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHTTCEEECEEEEE---SS-SSE-EEEEETT------SCC-------EEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHhCCCEEEEeEEEE---ec-CCe-EEEEeCC------Cce-------EEEEcCEEEECCCCCCCC
Confidence            44556777888999999887543   33 333 3354433      211       479999999999987644

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=88.42  E-value=1.8  Score=37.33  Aligned_cols=65  Identities=14%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+.+.+.+..++.||+|++++.++++...++   +.+ .|....    .+|...      .++.+|.||+|+|.....
T Consensus       250 ~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~-~v~~~~----~~g~~~------~~~~~D~vi~a~G~~p~~  317 (519)
T 3qfa_A          250 QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL-RVVAQS----TNSEEI------IEGEYNTVMLAIGRDACT  317 (519)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEE-EEEEEE----SSSSCE------EEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceE-EEEEEE----CCCcEE------EEEECCEEEEecCCcccC
Confidence            35666777888899999999998888865322   322 233322    123110      357899999999987644

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=88.17  E-value=0.82  Score=41.95  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=33.4

Q ss_pred             CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          80 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        80 ~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .|++|+++++|++|..+ ++.|. |.+.+               |..+.|+.||+|...
T Consensus       542 ~gl~I~l~t~V~~I~~~-~~~v~-V~~~~---------------G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYS-GDEVQ-VTTTD---------------GTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECS-SSSEE-EEETT---------------CCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEc-CCEEE-EEECC---------------CcEEEcCEEEECCCH
Confidence            48999999999999886 44444 66654               457999999999964

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=87.98  E-value=1.2  Score=35.51  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=38.8

Q ss_pred             HHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEE-cCEEEEcccCCccc
Q psy9486          71 KWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH-AKVTIFAEGCHGHL  142 (165)
Q Consensus        71 ~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~-Ak~VI~A~G~~s~l  142 (165)
                      +++.+..++.| |++++++.|.++..+ ++. ..|.+.+      |         ..+. ++.||.|+|.....
T Consensus       218 ~~l~~~l~~~g~v~~~~~~~v~~i~~~-~~~-~~v~~~~------g---------~~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          218 QRLGNVIKQGARIEMNVHYTVKDIDFN-NGQ-YHISFDS------G---------QSVHTPHEPILATGFDATK  274 (369)
T ss_dssp             HHHHHHHHTTCCEEEECSCCEEEEEEE-TTE-EEEEESS------S---------CCEEESSCCEECCCBCGGG
T ss_pred             HHHHHHHhhCCcEEEecCcEEEEEEec-CCc-eEEEecC------C---------eEeccCCceEEeeccCCcc
Confidence            55566667786 999999999999764 332 3455543      3         3454 59999999988754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.83  E-value=0.88  Score=38.29  Aligned_cols=55  Identities=15%  Similarity=0.077  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ...+.+.+++.|++++.++.+.   .+ .+. +-|.+.+      |..       .++.++.+|+|+|.++..
T Consensus        99 ~~~~~~~~~~~gv~~~~g~~~~---~~-~~~-~~v~~~~------G~~-------~~i~~d~lIiAtGs~p~~  153 (470)
T 1dxl_A           99 TRGIEGLFKKNKVTYVKGYGKF---VS-PSE-ISVDTIE------GEN-------TVVKGKHIIIATGSDVKS  153 (470)
T ss_dssp             HHHHHHHHHHHTCEEEESCEEE---EE-TTE-EEECCSS------SCC-------EEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHhCCCEEEEeEEEE---ec-CCE-EEEEeCC------Cce-------EEEEcCEEEECCCCCCCC
Confidence            3345666777899999998653   33 232 2233322      211       479999999999987654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=87.10  E-value=2.3  Score=33.09  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=42.7

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .++..++...+.+.+++.++++...+ +.....+. .. .-+.+.+               +.++.++.+|+|+|+..
T Consensus        62 ~i~~~~l~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~~-~~~~~~~---------------~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           62 GIDGNELMMNMRTQSEKYGTTIITET-IDHVDFST-QP-FKLFTEE---------------GKEVLTKSVIIATGATA  121 (314)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCEEECCC-EEEEECSS-SS-EEEEETT---------------CCEEEEEEEEECCCEEE
T ss_pred             cCCHHHHHHHHHHHHhhcCcEEEEeE-EEEeecCC-Cc-eEEEECC---------------CeEEEEeEEEEcccccc
Confidence            36777888888999999999998654 55554432 22 2344443               35899999999999764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=87.02  E-value=0.53  Score=40.12  Aligned_cols=70  Identities=23%  Similarity=0.197  Sum_probs=43.8

Q ss_pred             HHHHHHHHHH------CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCC--CCCCCCcC--eEEEcCEEEEcccCC
Q psy9486          70 VKWLGEQAEA------MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS--PKDTFARG--MELHAKVTIFAEGCH  139 (165)
Q Consensus        70 d~~L~~~A~~------~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~--~~~~~~~g--~~i~Ak~VI~A~G~~  139 (165)
                      .+.|.+.+++      .|++|++++.+.++.-  +++|.+|++.++-.+.++.  .. .-..|  .++.|+.||.|.|..
T Consensus       249 ~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~~~~~~~~~~~~-~~~~g~~~~i~~d~vi~a~G~~  325 (456)
T 1lqt_A          249 IKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRNELVSDGSGRVA-AKDTGEREELPAQLVVRSVGYR  325 (456)
T ss_dssp             HHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEEEEEECSSSSEE-EEEEEEEEEEECSEEEECSCEE
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEEEecCCCccccc-ccCCCceEEEEcCEEEEccccc
Confidence            4566666766      7999999999999864  3666677665310000100  00 00002  369999999999988


Q ss_pred             ccc
Q psy9486         140 GHL  142 (165)
Q Consensus       140 s~l  142 (165)
                      +..
T Consensus       326 p~~  328 (456)
T 1lqt_A          326 GVP  328 (456)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=86.66  E-value=0.61  Score=40.77  Aligned_cols=45  Identities=29%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             HHHHHHCCCEEec--CCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          74 GEQAEAMGVEIYP--GIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        74 ~~~A~~~Gv~i~~--~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ++...+.+|++..  .+.|++|.-  +    ||++.+               | ++.+|+||.|||-..
T Consensus       345 ~~al~~~nV~lv~~~~~~I~~it~--~----gv~~~d---------------G-~~~~D~IV~ATGf~~  391 (545)
T 3uox_A          345 YETYNRDNVHLVDIREAPIQEVTP--E----GIKTAD---------------A-AYDLDVIIYATGFDA  391 (545)
T ss_dssp             HHHTTSTTEEEEETTTSCEEEEET--T----EEEESS---------------C-EEECSEEEECCCCBS
T ss_pred             HHHhcCCCEEEEecCCCCceEEcc--C----eEEeCC---------------C-eeecCEEEECCcccc
Confidence            4444456899985  678888742  2    788876               6 899999999999885

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=86.66  E-value=1.5  Score=37.09  Aligned_cols=59  Identities=20%  Similarity=0.264  Sum_probs=40.6

Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH-HhhcCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL-SSRFNLR  153 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l-~~~~gl~  153 (165)
                      .|+|+++++|+++..++++.+. |.+.+    .+|+.       .++.||.||+|+|......  | .+..|+.
T Consensus       225 ~v~i~~~~~v~~i~~~~~~~v~-v~~~~----~~G~~-------~~i~~D~vi~a~G~~p~~~--l~l~~~gl~  284 (466)
T 3l8k_A          225 KLNIKFNSPVTEVKKIKDDEYE-VIYST----KDGSK-------KSIFTNSVVLAAGRRPVIP--EGAREIGLS  284 (466)
T ss_dssp             CCCEECSCCEEEEEEEETTEEE-EEECC----TTSCC-------EEEEESCEEECCCEEECCC--TTTGGGTCC
T ss_pred             EEEEEECCEEEEEEEcCCCcEE-EEEEe----cCCce-------EEEEcCEEEECcCCCcccc--cchhhcCce
Confidence            4999999999999775314443 55542    13322       3799999999999887664  4 4556664

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=86.55  E-value=1.3  Score=37.15  Aligned_cols=54  Identities=19%  Similarity=0.129  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcC-eEEEcCEEEEcccCCccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARG-MELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g-~~i~Ak~VI~A~G~~s~l  142 (165)
                      +.+.+.+.+++.|++++.++.+.   .+ .+. +-|.+.+               | .++.++.+|+|+|.+...
T Consensus        93 l~~~~~~~~~~~gv~~~~g~~~~---id-~~~-v~V~~~~---------------G~~~i~~d~lViATGs~p~~  147 (455)
T 1ebd_A           93 LTGGVEGLLKGNKVEIVKGEAYF---VD-ANT-VRVVNGD---------------SAQTYTFKNAIIATGSRPIE  147 (455)
T ss_dssp             HHHHHHHHHHTTTCEEEESEEEE---EE-TTE-EEEEETT---------------EEEEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHhCCCEEEEEEEEE---cc-CCe-EEEEeCC---------------CcEEEEeCEEEEecCCCCCC
Confidence            33445667778999999987553   33 333 3355543               2 479999999999987643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=86.55  E-value=0.82  Score=38.63  Aligned_cols=51  Identities=22%  Similarity=0.148  Sum_probs=33.6

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeE------EEcCEEEEcccCCc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGME------LHAKVTIFAEGCHG  140 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~------i~Ak~VI~A~G~~s  140 (165)
                      .+.+.+++.||+++.++.+..   + .+. +.|.+.+      |..       .+      +.++.||+|+|+++
T Consensus       101 ~~~~~~~~~gv~~~~g~~~~~---~-~~~-v~V~~~~------G~~-------~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A          101 GIELLFKKNKVTYYKGNGSFE---D-ETK-IRVTPVD------GLE-------GTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             HHHHHHHHTTCEEEESEEEES---S-SSE-EEEECCT------TCT-------TCCSSCEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHhCCCEEEEEEEEEc---c-CCe-EEEEecC------CCc-------ccccccceEEeCEEEECcCCCC
Confidence            355667789999999876541   3 333 3344432      210       24      99999999999876

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=86.13  E-value=1.3  Score=34.89  Aligned_cols=64  Identities=5%  Similarity=0.063  Sum_probs=44.1

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhc
Q psy9486          71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRF  150 (165)
Q Consensus        71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~  150 (165)
                      ..+.++.++.|+.++..+ +..+..+ ++++.+|++.+               |.++.++.+|++.|.....  .+.+++
T Consensus       184 ~~~~~~l~~~g~~~~~~~-v~~~~~~-~~~~~~v~~~~---------------g~~i~~~~~vi~~g~~~~~--~~~~~~  244 (304)
T 4fk1_A          184 QTIMDELSNKNIPVITES-IRTLQGE-GGYLKKVEFHS---------------GLRIERAGGFIVPTFFRPN--QFIEQL  244 (304)
T ss_dssp             HHHHHHHHTTTCCEECSC-EEEEESG-GGCCCEEEETT---------------SCEECCCEEEECCEEECSS--CHHHHT
T ss_pred             hhhhhhhhccceeEeeee-EEEeecC-CCeeeeeeccc---------------cceeeecceeeeeccccCC--hhhhhc
Confidence            345566677899988764 6666554 67788888875               4678888888888765543  355667


Q ss_pred             CCC
Q psy9486         151 NLR  153 (165)
Q Consensus       151 gl~  153 (165)
                      |+.
T Consensus       245 g~~  247 (304)
T 4fk1_A          245 GCE  247 (304)
T ss_dssp             TCC
T ss_pred             CeE
Confidence            764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=85.76  E-value=1.6  Score=36.57  Aligned_cols=54  Identities=17%  Similarity=0.275  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      -+++.+..++.||++++++.|+++.   .+++   ...+    .+|+       +.++.||.||.|.|..+
T Consensus       203 ~~~l~~~l~~~GV~~~~~~~v~~v~---~~~~---~~~~----~~g~-------~~~i~~d~vi~~~G~~~  256 (430)
T 3hyw_A          203 KRLVEDLFAERNIDWIANVAVKAIE---PDKV---IYED----LNGN-------THEVPAKFTMFMPSFQG  256 (430)
T ss_dssp             HHHHHHHHHHTTCEEECSCEEEEEC---SSEE---EEEC----TTSC-------EEEEECSEEEEECEEEC
T ss_pred             HHHHHHHHHhCCeEEEeCceEEEEe---CCce---EEEe----eCCC-------ceEeecceEEEeccCCC
Confidence            4456667788999999999999982   3432   2222    2232       35899999999999775

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=85.57  E-value=1  Score=38.28  Aligned_cols=58  Identities=19%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccc-----cCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI-----AKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~-----~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+++.|++++.++.+.   .+ ++. +-|.+.+ |.     ..+|+.       .+++++.+|+|+|+++..
T Consensus       100 ~~~~~~~~~gv~~~~g~~~~---~~-~~~-v~v~~~~-g~~~~~~~~~g~~-------~~i~ad~lViAtGs~p~~  162 (482)
T 1ojt_A          100 GLAGMAKSRKVDVIQGDGQF---LD-PHH-LEVSLTA-GDAYEQAAPTGEK-------KIVAFKNCIIAAGSRVTK  162 (482)
T ss_dssp             HHHHHHHHTTCEEEEEEEEE---EE-TTE-EEEEEEE-EEETTEEEEEEEE-------EEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHhCCcEEEeeEEEE---cc-CCE-EEEEecC-CcccccccccCcc-------eEEEcCEEEECCCCCCCC
Confidence            35566778999999887554   33 333 2343322 00     000100       369999999999988643

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=85.53  E-value=1.4  Score=41.23  Aligned_cols=60  Identities=22%  Similarity=0.297  Sum_probs=43.1

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccC---CCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK---DGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~---~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+++++.||+|++++.+.++.-++++++.+|.+.+.  +.   +|+       ..++.+|.||+|.|.....
T Consensus       323 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~--~~~~~~G~-------~~~i~~D~Vv~a~G~~P~~  385 (965)
T 2gag_A          323 AAQAVADGVQVISGSVVVDTEADENGELSAIVVAEL--DEARELGG-------TQRFEADVLAVAGGFNPVV  385 (965)
T ss_dssp             HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEE--CTTCCEEE-------EEEEECSEEEEECCEEECC
T ss_pred             HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEec--cccCCCCc-------eEEEEcCEEEECCCcCcCh
Confidence            456788999999999999997632467778776531  00   111       1479999999999987654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=85.04  E-value=0.29  Score=41.14  Aligned_cols=53  Identities=13%  Similarity=0.044  Sum_probs=39.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCC-ceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGI-PASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~-~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ++.+.+..++.+|.+++++.|++++... .+.++             ..                ....++.||+|+|.+
T Consensus       116 ~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l-------------~~----------------~~~~ad~VV~AdG~~  166 (430)
T 3ihm_A          116 SRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDL-------------EG----------------LSEQYDLLVVCTGKY  166 (430)
T ss_dssp             EBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGH-------------HH----------------HHTTSSEEEECCCCT
T ss_pred             ceeecHHHHHHHHHHHHHHcCCEEEEEecchhhh-------------hh----------------hcccCCEEEECCCCc
Confidence            5889999999999999999999997632 11111             00                112579999999999


Q ss_pred             ccc
Q psy9486         140 GHL  142 (165)
Q Consensus       140 s~l  142 (165)
                      |.+
T Consensus       167 S~~  169 (430)
T 3ihm_A          167 ALG  169 (430)
T ss_dssp             TGG
T ss_pred             chH
Confidence            866

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=84.55  E-value=0.83  Score=36.38  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             HHHHHH-HHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          72 WLGEQA-EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        72 ~L~~~A-~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.++. ++.||++++++.+.++..+  +++.+|.+.+.   .+|+       ..++.+|.||+|+|.....
T Consensus       195 ~~~~~~~~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~---~~g~-------~~~i~~D~vi~a~G~~p~~  254 (335)
T 2a87_A          195 IMLDRARNNDKIRFLTNHTVVAVDGD--TTVTGLRVRDT---NTGA-------ETTLPVTGVFVAIGHEPRS  254 (335)
T ss_dssp             THHHHHHHCTTEEEECSEEEEEEECS--SSCCEEEEEEE---TTSC-------CEEECCSCEEECSCEEECC
T ss_pred             HHHHHHhccCCcEEEeCceeEEEecC--CcEeEEEEEEc---CCCc-------eEEeecCEEEEccCCccCh
Confidence            344343 4689999999999999653  45556666431   1232       1479999999999977543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=84.02  E-value=1.5  Score=37.37  Aligned_cols=52  Identities=23%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+.+++.|++++.+++|..+..+ ++. +-|.. +      |       .+.++.++.+|+|+|.+..
T Consensus        99 ~~~~~~~gv~v~~~~~v~~i~~~-~~~-v~v~~-~------g-------~~~~~~~d~lviAtG~~p~  150 (490)
T 2bc0_A           99 KEELESLGAKVYMESPVQSIDYD-AKT-VTALV-D------G-------KNHVETYDKLIFATGSQPI  150 (490)
T ss_dssp             HHHHHHTTCEEETTCCEEEEETT-TTE-EEEEE-T------T-------EEEEEECSEEEECCCEEEC
T ss_pred             HHHHHhCCCEEEeCCEEEEEECC-CCE-EEEEe-C------C-------cEEEEECCEEEECCCCCcC
Confidence            34456789999999999998653 333 22331 1      1       0247999999999997653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=82.89  E-value=4.4  Score=35.27  Aligned_cols=63  Identities=22%  Similarity=0.270  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEc-----CC---CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYH-----GD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-----~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+...+.+..++.||++++++.+.++...     ++   +++. |....    .+|+.       .++.+|.||+|.|..
T Consensus       327 ~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~----~~g~~-------~~~~~D~vi~a~G~~  394 (598)
T 2x8g_A          327 QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY----TDGKK-------FEEEFETVIFAVGRE  394 (598)
T ss_dssp             HHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE----TTSCE-------EEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe----CCCcE-------EeccCCEEEEEeCCc
Confidence            45556677778899999999988887531     12   3332 22211    12321       134599999999987


Q ss_pred             ccc
Q psy9486         140 GHL  142 (165)
Q Consensus       140 s~l  142 (165)
                      ...
T Consensus       395 p~~  397 (598)
T 2x8g_A          395 PQL  397 (598)
T ss_dssp             ECG
T ss_pred             ccc
Confidence            654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=82.58  E-value=1.6  Score=36.40  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+...|.+.+++.||+++. .+|+.+..+  ++  .|.+.+               |.++.+|.+|+|+|+...
T Consensus        60 ~~~~~l~~~~~~~gv~~~~-~~v~~id~~--~~--~V~~~~---------------g~~i~~d~lviAtG~~~~  113 (437)
T 3sx6_A           60 DIAFPIRHYVERKGIHFIA-QSAEQIDAE--AQ--NITLAD---------------GNTVHYDYLMIATGPKLA  113 (437)
T ss_dssp             HHEEECHHHHHTTTCEEEC-SCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCCEEC
T ss_pred             HHHHHHHHHHHHCCCEEEE-eEEEEEEcC--CC--EEEECC---------------CCEEECCEEEECCCCCcC
Confidence            3444466777789999985 588888653  33  355554               357999999999998654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=82.30  E-value=1.1  Score=37.29  Aligned_cols=47  Identities=23%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             HHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          76 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        76 ~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+++.|++++.+++|+.+..+  ++  .|.+.+               |.++.++.+|+|+|+...
T Consensus        68 ~~~~~~v~~~~~~~v~~i~~~--~~--~v~~~~---------------g~~~~~d~lviAtG~~~~  114 (408)
T 2gqw_A           68 CKRAPEVEWLLGVTAQSFDPQ--AH--TVALSD---------------GRTLPYGTLVLATGAAPR  114 (408)
T ss_dssp             CTTSCSCEEEETCCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCEEEC
T ss_pred             HHHHCCCEEEcCCEEEEEECC--CC--EEEECC---------------CCEEECCEEEECCCCCCC
Confidence            345789999999999998653  33  345543               357999999999998653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=82.05  E-value=0.73  Score=40.21  Aligned_cols=42  Identities=31%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             HCCCEEec--CCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          79 AMGVEIYP--GIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        79 ~~Gv~i~~--~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.+|++..  ...++++.-  +    ||++.+               |.++.+|+||.|+|....
T Consensus       342 ~~nV~lv~~~~~~I~~it~--~----gv~~~d---------------G~~~~~DvIV~ATGf~~~  385 (540)
T 3gwf_A          342 RPNVEAVAIKENPIREVTA--K----GVVTED---------------GVLHELDVLVFATGFDAV  385 (540)
T ss_dssp             STTEEEEETTTSCEEEECS--S----EEEETT---------------CCEEECSEEEECCCBSCS
T ss_pred             CCCEEEEeCCCCCccEEec--C----eEEcCC---------------CCEEECCEEEECCccCcc
Confidence            45888885  667777732  2    788876               567999999999998865

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=81.42  E-value=1.8  Score=35.86  Aligned_cols=45  Identities=18%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .++.|++++.+++|+.+..+  .+  -|.+.+               |.++.++.+|+|+|...
T Consensus        67 ~~~~~i~~~~~~~v~~id~~--~~--~v~~~~---------------g~~~~~d~lvlAtG~~p  111 (410)
T 3ef6_A           67 YGEARIDMLTGPEVTALDVQ--TR--TISLDD---------------GTTLSADAIVIATGSRA  111 (410)
T ss_dssp             HHHTTCEEEESCCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             HHHCCCEEEeCCEEEEEECC--CC--EEEECC---------------CCEEECCEEEEccCCcc
Confidence            45679999999999998653  33  345544               35899999999999764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=81.35  E-value=2.4  Score=37.67  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ++.+..++.||+++++++|+++.  +++    |.+..     +|+       ..++.||.||.|.|.....
T Consensus       578 ~~~~~l~~~GV~v~~~~~v~~i~--~~~----v~~~~-----~G~-------~~~i~~D~Vi~a~G~~p~~  630 (671)
T 1ps9_A          578 IHRTTLLSRGVKMIPGVSYQKID--DDG----LHVVI-----NGE-------TQVLAVDNVVICAGQEPNR  630 (671)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEE--TTE----EEEEE-----TTE-------EEEECCSEEEECCCEEECC
T ss_pred             HHHHHHHhcCCEEEeCcEEEEEe--CCe----EEEec-----CCe-------EEEEeCCEEEECCCccccH
Confidence            45667788999999999999884  232    32211     121       1479999999999987643

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=81.04  E-value=1.7  Score=36.59  Aligned_cols=61  Identities=8%  Similarity=-0.032  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHCC-CEEecCCceeEEEEcCCCc----EEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          69 VVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGS----VKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        69 ~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~----V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      +......-++++| ++|+++++|++|..++++.    ++.|.+.+    .+|...      ..+.||.||.|....
T Consensus       242 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~----~~g~~~------~~~~ad~VI~a~p~~  307 (504)
T 1sez_A          242 MQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISAS----PHKRQS------EEESFDAVIMTAPLC  307 (504)
T ss_dssp             THHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBC----SSSSCB------CCCEESEEEECSCHH
T ss_pred             HHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcC----CCCccc------eeEECCEEEECCCHH
Confidence            3433333344567 8999999999999864442    35566653    123110      368999999998865

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=81.04  E-value=2.1  Score=35.84  Aligned_cols=53  Identities=8%  Similarity=0.014  Sum_probs=37.5

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.+..++.|++++.++.|+++..+ ++. +-+....     +         +.++.++.+|+|+|....
T Consensus        64 ~~~~~~~~gi~~~~~~~V~~id~~-~~~-v~v~~~~-----~---------~~~~~~d~lviAtG~~p~  116 (452)
T 3oc4_A           64 TEEELRRQKIQLLLNREVVAMDVE-NQL-IAWTRKE-----E---------QQWYSYDKLILATGASQF  116 (452)
T ss_dssp             CHHHHHHTTEEEECSCEEEEEETT-TTE-EEEEETT-----E---------EEEEECSEEEECCCCCBC
T ss_pred             CHHHHHHCCCEEEECCEEEEEECC-CCE-EEEEecC-----c---------eEEEEcCEEEECCCcccC
Confidence            345567789999999999999764 333 3343221     0         357999999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=80.63  E-value=1.5  Score=35.90  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=32.6

Q ss_pred             HHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          76 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        76 ~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..++.|++++.+++|+.+-.+  .+.  |. .+               |.++.+|.+|+|+|+..
T Consensus        69 ~~~~~~v~~~~g~~v~~id~~--~~~--V~-~~---------------g~~~~~d~lViATGs~p  113 (367)
T 1xhc_A           69 WYRKRGIEIRLAEEAKLIDRG--RKV--VI-TE---------------KGEVPYDTLVLATGARA  113 (367)
T ss_dssp             HHHHHTEEEECSCCEEEEETT--TTE--EE-ES---------------SCEEECSEEEECCCEEE
T ss_pred             HHHhCCcEEEECCEEEEEECC--CCE--EE-EC---------------CcEEECCEEEECCCCCC
Confidence            345679999999999988543  332  33 22               34799999999999754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=80.06  E-value=2.5  Score=34.54  Aligned_cols=49  Identities=18%  Similarity=0.166  Sum_probs=35.6

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      +.+.+++.|++++.+++|..+..+ +.   .|.+.+                .++.++.+|+|+|....
T Consensus        66 ~~~~~~~~~v~~~~~~~v~~i~~~-~~---~v~~~~----------------~~~~~d~lviAtG~~p~  114 (384)
T 2v3a_A           66 PGAMAEQLNARILTHTRVTGIDPG-HQ---RIWIGE----------------EEVRYRDLVLAWGAEPI  114 (384)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEGG-GT---EEEETT----------------EEEECSEEEECCCEEEC
T ss_pred             HHHHHHhCCcEEEeCCEEEEEECC-CC---EEEECC----------------cEEECCEEEEeCCCCcC
Confidence            344557789999999999988653 23   244443                37999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-31
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-05

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  114 bits (286), Expect = 1e-31
 Identities = 111/157 (70%), Positives = 128/157 (81%)

Query: 1   GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHG 60
            H LSGA +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHG
Sbjct: 75  AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG 134

Query: 61  NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDT 120
           NYVVRLGH+V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK T
Sbjct: 135 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTT 194

Query: 121 FARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCM 157
           F RG+ELHAKVTIFAEGCHGHL K L  +F+LR  C 
Sbjct: 195 FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCE 231

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 44  KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG 103
             IG+        + +             + +      V+++  + A +++  G+  V G
Sbjct: 94  DEIGVAY---DEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR-VGG 149

Query: 104 IATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQC 156
           + T    +        +      + AK+ + + G  G    +   R    G  
Sbjct: 150 VVTN-WALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMI 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.8
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.97
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.77
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.71
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.69
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.65
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.57
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.51
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.08
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	97.95
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.9
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.72
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.71
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.7
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.64
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.61
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.6
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.59
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.38
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.25
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.22
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.04
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.92
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	96.83
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.8
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.8
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.78
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.75
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.73
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	96.6
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.41
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.39
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.3
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.28
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.25
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.22
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.22
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.18
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.13
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	96.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	95.77
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.27
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.24
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.14
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.09
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	94.75
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	94.63
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	94.44
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.54
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.53
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.5
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.22
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	92.84
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.93
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.54
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.0
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.78
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	85.76
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	83.88
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.69
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	80.88

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.80  E-value=3.1e-19  Score=149.85  Aligned_cols=160  Identities=70%  Similarity=1.240  Sum_probs=147.1

Q ss_pred             CceeeeceecccchhhhccccccCCCCCcccceeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHC
Q psy9486           1 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM   80 (165)
Q Consensus         1 ~h~lsG~~l~~~~l~el~P~~~~~~~p~~~~v~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~   80 (165)
                      +|++||+++++++|++|+|+|++.+.+.++.+..+.++|+.+.....+++.+...+.+.++|++++..+++|+.++|+++
T Consensus        75 ~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~  154 (380)
T d2gmha1          75 AHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL  154 (380)
T ss_dssp             TTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHT
T ss_pred             CCccccccccHHHHHHHccchhhhccccccceecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhc
Confidence            59999999999999999999998788888899999999999988888887665456678899999999999999999999


Q ss_pred             CCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCCCCCCCC
Q psy9486          81 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRGQCMSSG  160 (165)
Q Consensus        81 Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~~~~~~~  160 (165)
                      |++++.++.+.++++++++.+.++.+.+.+.++++...+.|.++..+.++.+++++|+.+.+.+++++.+.+.....|+.
T Consensus       155 g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~  234 (380)
T d2gmha1         155 GVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQG  234 (380)
T ss_dssp             TCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCC
T ss_pred             cceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhhhhhcccccccc
Confidence            99999999999999987899999999999999999999999999999999999999999999999999999887666553

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.97  E-value=2.3e-09  Score=84.42  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=68.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ...++-..+..+|.+.|++.|++|+++++|++|..+ ++++++|+|.+                .+|+|+.||+|+|+|+
T Consensus       142 ~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~----------------g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         142 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTAD----------------GVIPADIVVSCAGFWG  204 (305)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT----------------EEEECSEEEECCGGGH
T ss_pred             ccccchhhhhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccc----------------eeEECCEEEEecchhH
Confidence            446788899999999999999999999999999996 78999999975                4899999999999997


Q ss_pred             ccchHHHhhcCCCCCCCC
Q psy9486         141 HLTKSLSSRFNLRGQCMS  158 (165)
Q Consensus       141 ~l~~~l~~~~gl~~~~~~  158 (165)
                         +++.+.+|+.-+..+
T Consensus       205 ---~~l~~~~g~~lP~~~  219 (305)
T d1pj5a2         205 ---AKIGAMIGMAVPPDG  219 (305)
T ss_dssp             ---HHHHHTTTCCCCTTS
T ss_pred             ---HHHHHHcCCcccccc
Confidence               788888888654444

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.77  E-value=7.9e-09  Score=79.85  Aligned_cols=72  Identities=24%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .++-..+.+.|.+.|++.|++|+++++|++|..  ++++++|+|.+                .+|.|+.||+|+|+||  
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~----------------g~i~a~~vV~AaG~~s--  206 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPS----------------GDVWANHVVVASGVWS--  206 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETT----------------EEEEEEEEEECCGGGT--
T ss_pred             eeecccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCC----------------eEEEcCEEEECCCccH--
Confidence            567788999999999999999999999999876  35668899976                3899999999999997  


Q ss_pred             chHHHhhcCCCCC
Q psy9486         143 TKSLSSRFNLRGQ  155 (165)
Q Consensus       143 ~~~l~~~~gl~~~  155 (165)
                       +++.+++|++..
T Consensus       207 -~~l~~~~G~~~~  218 (276)
T d1ryia1         207 -GMFFKQLGLNNA  218 (276)
T ss_dssp             -HHHHHHTTCCCC
T ss_pred             -HHHHhhcCCCcc
Confidence             888888998753

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.71  E-value=4.2e-08  Score=74.72  Aligned_cols=72  Identities=19%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch-
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK-  144 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~-  144 (165)
                      ...+.++|.++++++||+|+++++|++|..+ ++++.+|.+.+               |..|+||.||+|+|..|...- 
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~---------------g~~i~a~~vI~AtGg~S~p~~G  172 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQT---------------GEVLETNHVVIAVGGKSVPQTG  172 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT---------------CCEEECSCEEECCCCSSSGGGS
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCC---------------CCeEecCeEEEccCCccccccC
Confidence            3568889999999999999999999999986 68888998875               468999999999999886531 


Q ss_pred             ------HHHhhcCCC
Q psy9486         145 ------SLSSRFNLR  153 (165)
Q Consensus       145 ------~l~~~~gl~  153 (165)
                            ++.++++..
T Consensus       173 s~g~g~~~a~~~~~~  187 (251)
T d2i0za1         173 STGDGYAWAEKAGHT  187 (251)
T ss_dssp             CSSHHHHHHHHTTCC
T ss_pred             CCcccchhcccceee
Confidence                  455556653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.69  E-value=3e-08  Score=78.15  Aligned_cols=75  Identities=23%  Similarity=0.236  Sum_probs=61.3

Q ss_pred             EhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccch
Q psy9486          65 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTK  144 (165)
Q Consensus        65 ~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~  144 (165)
                      ....+.+.|.++|++.|++|++++.|++++.+++|+|+||.+.+    .++..       ..|+||.||+|+|..+.+ .
T Consensus       143 ~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~----~~~~~-------~~i~Ak~VVlAtGG~~~n-~  210 (308)
T d1y0pa2         143 VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKG----MYKGY-------YWVKADAVILATGGFAKN-N  210 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEE----TTTEE-------EEEECSEEEECCCCCTTC-H
T ss_pred             hHHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccc----cccce-------eEeecCeEEEccCccccc-H
Confidence            34567888999999999999999999999998778999998875    23322       379999999999999988 5


Q ss_pred             HHHhhcC
Q psy9486         145 SLSSRFN  151 (165)
Q Consensus       145 ~l~~~~g  151 (165)
                      ++.++|.
T Consensus       211 ~~~~~~~  217 (308)
T d1y0pa2         211 ERVAKLD  217 (308)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            6666663

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.65  E-value=7.2e-08  Score=74.70  Aligned_cols=74  Identities=23%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      +..++-..+...|.+.|++.||+|+++++|++|..+ ++++ .|+|.+                .+|.|+.||+|+|+|+
T Consensus       144 ~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~----------------g~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         144 SGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETAN----------------GSYTADKLIVSMGAWN  205 (281)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETT----------------EEEEEEEEEECCGGGH
T ss_pred             cccccccccccccccccccccccccCCcEEEEEEEE-CCEE-EEEECC----------------cEEEcCEEEECCCCcc
Confidence            346777889999999999999999999999999986 4554 688875                3799999999999997


Q ss_pred             ccchHHHhhcCCCCC
Q psy9486         141 HLTKSLSSRFNLRGQ  155 (165)
Q Consensus       141 ~l~~~l~~~~gl~~~  155 (165)
                         .+|.+++|++.+
T Consensus       206 ---~~l~~~lg~~~~  217 (281)
T d2gf3a1         206 ---SKLLSKLNLDIP  217 (281)
T ss_dssp             ---HHHGGGGTEECC
T ss_pred             ---hhhHHhcCCccc
Confidence               788888988753

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.57  E-value=4.9e-08  Score=77.70  Aligned_cols=74  Identities=19%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchH
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKS  145 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~  145 (165)
                      ...+.+.|.++|++.|++|+++++|++++.+++|+|+||.+.+    .++..       ..|+||.||+|+|..+.+ .+
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~----~~~~~-------~~i~Ak~VIlAtGG~~~n-~~  218 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKG----EYTGY-------YVIKADAVVIAAGGFAKN-NE  218 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEE----TTTEE-------EEEECSEEEECCCCCTTC-HH
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEe----ecccE-------EEEeCCeEEEcCCCcccC-HH
Confidence            4567889999999999999999999999997789999998875    23322       369999999999999887 55


Q ss_pred             HHhhcC
Q psy9486         146 LSSRFN  151 (165)
Q Consensus       146 l~~~~g  151 (165)
                      +.++|.
T Consensus       219 ~~~~~~  224 (322)
T d1d4ca2         219 RVSKYD  224 (322)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            555553

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.51  E-value=1.3e-07  Score=75.34  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      ..+.+.|.+++++.|+++++++.|++++.+++++|+||.+.+    .+++.       ..|.||.||+|+|.++.. .++
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~----~~~~~-------~~i~Ak~VVlAtGG~~~n-~~~  215 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHG----KHTGY-------YMIGAKSVVLATGGYGMN-KEM  215 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEE----TTTEE-------EEEEEEEEEECCCCCTTC-HHH
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeec----ccceE-------EEEeccceEEeccccccC-HHH
Confidence            357788999999999999999999999887789999998876    34432       368999999999999887 456


Q ss_pred             HhhcC
Q psy9486         147 SSRFN  151 (165)
Q Consensus       147 ~~~~g  151 (165)
                      .+.|.
T Consensus       216 ~~~~~  220 (317)
T d1qo8a2         216 IAYYR  220 (317)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            66553

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.08  E-value=4.1e-06  Score=64.15  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc--
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL--  142 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l--  142 (165)
                      +..+.++|.+.|+++||+|+++++|+++...+++ .+..+...+               +.+|+||.||+|+|..|.-  
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~---------------~~~~~a~~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN---------------STQWQCKNLIVATGGLSMPGL  172 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET---------------TEEEEESEEEECCCCSSCGGG
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecC---------------CEEEEeCEEEEcCCccccccc
Confidence            4678899999999999999999999999886554 333333332               3689999999999987632  


Q ss_pred             -----chHHHhhcCCC
Q psy9486         143 -----TKSLSSRFNLR  153 (165)
Q Consensus       143 -----~~~l~~~~gl~  153 (165)
                           .-++.+++|+.
T Consensus       173 G~~g~g~~~a~~~~~~  188 (253)
T d2gqfa1         173 GATPFGYQIAEQFGIP  188 (253)
T ss_dssp             TCCSHHHHHHHHTTCC
T ss_pred             CCCchHHHHHHhcccc
Confidence                 12455556654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=97.95  E-value=1.1e-05  Score=63.44  Aligned_cols=65  Identities=23%  Similarity=0.307  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+...|.+++++.|++|++.+.+.+++.+ +++|+|+...+.   ++|+.       ..|.||.||+|+|..+.+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~---~~g~~-------~~i~Ak~VvlATGG~~~~  222 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDL---VTGDI-------IAYVAKGTLIATGGYGRI  222 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEET---TTCCE-------EEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc-cccccceeEEec---cCCcE-------EEEecCeEEEeccccccc
Confidence            457778999999999999999999999996 799999877642   46665       379999999999988743

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=6.6e-06  Score=65.32  Aligned_cols=65  Identities=15%  Similarity=0.330  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+...|.+.++..||+|++.+.|.+|+.+ +|+|+||...+.   .+|+.       ..+.||.||+|+|..+.+
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~---~~g~~-------~~~~AkaVILATGG~g~~  199 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTL-------VQIRANAVVMATGGAGRV  199 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEET---TTTEE-------EEEECSCEEECCCCCGGG
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEec-CCcceeEEEEEc---CCCcE-------EEEECCEEEEcCCCcccc
Confidence            344445555555578999999999999997 799999876542   35544       368999999999988754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.71  E-value=3.1e-05  Score=59.50  Aligned_cols=100  Identities=16%  Similarity=0.092  Sum_probs=68.2

Q ss_pred             ceeceEEEEcCCceEEecCCCCCCCCCCCcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccc
Q psy9486          32 VQEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI  111 (165)
Q Consensus        32 v~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~  111 (165)
                      .....+.+........+++...  ......|.+.+..+.+.|.+.+++.|..++....+......+++. +.|....   
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---  143 (292)
T d1k0ia1          70 LVHEGVEIAFAGQRRRIDLKRL--SGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER-PYVTFER---  143 (292)
T ss_dssp             EEESCEEEEETTEEEEECHHHH--HTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS-CEEEEEE---
T ss_pred             ccccceEEEecccccccccccc--cccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCc-eEEEEec---
Confidence            3444555555544444443211  123457899999999999999999999888888777776653343 3455543   


Q ss_pred             cCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486         112 AKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus       112 ~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                        +|+.       .+++|++||+|+|.+|.+.+.+
T Consensus       144 --~g~~-------~~i~a~~vVgADG~~S~vR~~i  169 (292)
T d1k0ia1         144 --DGER-------LRLDCDYIAGCDGFHGISRQSI  169 (292)
T ss_dssp             --TTEE-------EEEECSEEEECCCTTCSTGGGS
T ss_pred             --CCcE-------EEEEeCEEEECCCCCCccccee
Confidence              3321       3689999999999999997763

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=5.8e-05  Score=54.25  Aligned_cols=51  Identities=22%  Similarity=0.283  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEE
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIF  134 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~  134 (165)
                      .+.+.|++.+++.|++|+++++|++|.+++ +++|++|.++                |.+++||.||.
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~----------------g~~~~ad~VI~  288 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK----------------LGTFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET----------------TEEEECSCEEE
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcC----------------CEEEECCEEEE
Confidence            577788999999999999999999998854 4678888765                36899999885

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.00012  Score=49.98  Aligned_cols=55  Identities=24%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+-+++.+..++.||++++++.|+++..++++.+. |.+.+               |.++.+|.||+|+|
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~-v~~~~---------------g~~~~~D~vi~a~G  116 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LELED---------------GRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEE-EEETT---------------SCEEEESEEEECSC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEE-EEECC---------------CCEEEcCEEEEecC
Confidence            356778899999999999999999999876555543 66665               46899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.61  E-value=0.00012  Score=49.89  Aligned_cols=54  Identities=26%  Similarity=0.351  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .+-+++.+..++.||+|++++.|+++..++++. ..|.+.+               |.++.||.||.|+|
T Consensus        63 ~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~-~~v~~~~---------------g~~i~~D~Vi~a~G  116 (117)
T d1feca2          63 ELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFES---------------GAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETT---------------SCEEEESEEEECSC
T ss_pred             hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE-EEEEECC---------------CCEEEcCEEEEecC
Confidence            466788888999999999999999998764554 4577765               46899999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00013  Score=51.21  Aligned_cols=54  Identities=22%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+-.++.+..++.||++++++.|+++..+ ++++ .|.+.+               |.+|.||.||.|+|.
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~-~~~~-~v~l~~---------------G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKD---------------GRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETT---------------SCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEec-CCEE-EEEECC---------------CCEEECCEEEEeecC
Confidence            45668888999999999999999999875 4544 477765               568999999999993

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.59  E-value=0.00017  Score=50.47  Aligned_cols=55  Identities=22%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEc-CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .+.+++.+..++.||++++++.|+++... +++++..|.+.+               |.++.||.||+|.|
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~---------------G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED---------------GTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT---------------SCEEECSEEEECCC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCC---------------CCEEECCEEEEeeC
Confidence            44567777778999999999999999774 356888888886               56899999999988

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.38  E-value=0.00038  Score=47.24  Aligned_cols=57  Identities=16%  Similarity=0.350  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          69 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        69 ~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      +-+++.+..++.|++++++++++++..++++++..+.....    ++        +.++.||.||+|.|
T Consensus        65 ~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~----~~--------~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          65 TRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTP----NG--------EMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEET----TE--------EEEEECSCEEECCC
T ss_pred             hhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeC----CC--------CEEEEcCEEEEEEC
Confidence            45677778888999999999999999877788777655431    11        35799999999988

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00046  Score=54.39  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      ..+...|.+++++.+++++..+.+.+++.+++++++|+...+.   .+|+.       ..+.|+.||+|+|..+.+
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~---~~g~~-------~~~~a~~vIlAtGG~~~l  208 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCI---ETGEV-------VYFKARATVLATGGAGRI  208 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEET---TTCCE-------EEEEESCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEc---cCCcE-------EEEeccEEEEcCCCcccc
Confidence            3567788999999999999999999998876788888665542   45654       379999999999988755

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.22  E-value=0.00088  Score=45.48  Aligned_cols=52  Identities=21%  Similarity=0.305  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA  135 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A  135 (165)
                      .+-+++.+..++.||+++++++++++..++++++ .|.+.+               |.++.||.||.|
T Consensus        65 ~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~---------------G~~i~~D~Vi~A  116 (117)
T d1aoga2          65 TLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFES---------------GKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETT---------------SCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE-EEEECC---------------CcEEEeCEEEEe
Confidence            4556778888899999999999999987656654 377765               568999999987

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.04  E-value=0.0013  Score=44.87  Aligned_cols=57  Identities=19%  Similarity=0.151  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .++-+++.+..++.|++|+++++|+++..++ +.+ -|...+    .++        +.++.|+.||+|.|
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~v-~v~~~~----~~~--------~~~~~~D~vlvAvG  119 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVKN-KQV-TVKFVD----AEG--------EKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEECS-SCE-EEEEES----SSE--------EEEEEESEEEECSC
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEeC-CEE-EEEEEE----CCC--------CEEEECCEEEEeeC
Confidence            3456778888889999999999999998864 332 244443    112        24799999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.92  E-value=0.0014  Score=44.87  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE  136 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~  136 (165)
                      ..+-.+|.+..++.|++|++++++.++..++++..+.+...+     +|+.       ..+.||.|++|+
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~-----~g~~-------~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSA-----GGEQ-------TIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESS-----SCCC-------EEEEESEEECCC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECC-----CCeE-------EEEEcCEEEEcC
Confidence            456678889999999999999999999876555444455543     4433       469999999884

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0011  Score=51.43  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=46.6

Q ss_pred             HHHHHHHHCCCEEecCCceeEEEEcCC------CcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          72 WLGEQAEAMGVEIYPGIPASEVLYHGD------GSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        72 ~L~~~A~~~Gv~i~~~~~v~~i~~~~~------g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .+.+.+++.|+++++.+.+.+++.+++      ++|+||...+.   .+|+.       ..+.||.||+|+|..+.+
T Consensus       143 ~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~---~~g~~-------~~~~ak~VilAtGG~~~~  209 (305)
T d1chua2         143 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNR---NKETV-------ETCHAKAVVLATGGASKV  209 (305)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEET---TTTEE-------EEEECSEEEECCCCCGGG
T ss_pred             HHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeC---CCCcE-------EEEeecceEEeeeccccc
Confidence            345666778999999999999999743      27999987541   23433       368999999999998765

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0022  Score=43.94  Aligned_cols=63  Identities=21%  Similarity=0.135  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ..+-+++.+..++.||+|+++++++++..+++|..+-.....     .|... +  ....+.||.||.|+|
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~-----~g~~~-~--~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAV-----PGRLP-V--MTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECC-----TTSCC-E--EEEEEEESEEEECSC
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEcc-----CCcCc-C--ccccccCCEEEEEeC
Confidence            345677888888999999999999999876444322222222     22110 0  013578999999998

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.80  E-value=0.0015  Score=51.17  Aligned_cols=69  Identities=14%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      -..|..+.++|...|++.+..|.+++.|+++..+ +++.. |.+.+.   +.++..      ....+|.||+|+|..+.-
T Consensus       109 f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~w~-Vt~~~~---~~~~~~------~~~~~d~VI~AtG~~s~p  177 (335)
T d2gv8a1         109 FPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSWV-VTYKGT---KAGSPI------SKDIFDAVSICNGHYEVP  177 (335)
T ss_dssp             SCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEEE-EEEEES---STTCCE------EEEEESEEEECCCSSSSB
T ss_pred             CCchHHHHHHHHHHHHHhhhcccCceEEEEEEec-CCEEE-EEEEec---CCCCeE------EEEEeeEEEEcccccccc
Confidence            3679999999999999999999999999999986 56532 444431   223221      356799999999998744

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.0032  Score=42.99  Aligned_cols=59  Identities=22%  Similarity=0.212  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA  135 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A  135 (165)
                      .++-..+.+..++.||+|+++++|+++..++++.++.+...+ +  +.++       +.++.||.||+|
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~-~--~~~~-------~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVED-T--KTNK-------QENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEE-T--TTTE-------EEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEe-C--CCCC-------eEEEEeCEEEEC
Confidence            456667788888999999999999999887667665555543 0  1121       357999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.75  E-value=0.0019  Score=44.21  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .+.+++.+..++.||+++++++|+++.   ++.   |.+.+               |.++.||.||+|.|
T Consensus        73 ~~~~~~~~~l~~~GV~i~~~~~v~~~~---~~~---v~l~d---------------g~~i~~D~vi~a~G  121 (121)
T d1d7ya2          73 TLADFVARYHAAQGVDLRFERSVTGSV---DGV---VLLDD---------------GTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHHTTTCEEEESCCEEEEE---TTE---EEETT---------------SCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHCCcEEEeCCEEEEEe---CCE---EEECC---------------CCEEECCEEEEeeC
Confidence            456677788889999999999998863   343   45554               46899999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.73  E-value=0.0026  Score=49.87  Aligned_cols=62  Identities=13%  Similarity=0.204  Sum_probs=52.7

Q ss_pred             EEhHHHHHHHHHHHHHCCC--EEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          64 VRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        64 i~r~~~d~~L~~~A~~~Gv--~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .++..+.++|.+.|++.++  .|.++|+|+++.++++....-|.+.+               +..++||+||.|+|..+
T Consensus        82 p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~---------------~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          82 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNH---------------GDRIRARYLIMASGQLS  145 (298)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETT---------------CCEEEEEEEEECCCSCC
T ss_pred             CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccc---------------ccccccceEEEeecccc
Confidence            4678899999999999998  59999999999997665566788875               35899999999999755

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=96.60  E-value=0.0019  Score=49.46  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          80 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        80 ~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .+.+|+.+ .|.+++.+ +++|.||+|.+               |.+|+|+.||+|+|..
T Consensus        81 ~nL~i~q~-~V~dli~e-~~~v~gV~t~~---------------G~~~~AkaVILtTGTF  123 (230)
T d2cula1          81 RPLHLFQA-TATGLLLE-GNRVVGVRTWE---------------GPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TTEEEEEC-CEEEEEEE-TTEEEEEEETT---------------SCCEECSEEEECCTTC
T ss_pred             cCHHHHhc-cceeeEec-ccceeeEEecc---------------ccEEEEeEEEEccCcc
Confidence            58899865 68999886 78999999986               5689999999999943

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.41  E-value=0.0013  Score=51.87  Aligned_cols=64  Identities=23%  Similarity=0.210  Sum_probs=41.9

Q ss_pred             HHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          71 KWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        71 ~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .-++..|++.| ++|++++.|++|++++ ++..+|.....  +..|+..    ...+++||.||+|.|+-.+
T Consensus       226 ~~~L~~a~~~g~~~i~t~~~V~~I~~~~-~~~~~V~v~~~--~~~~~~~----~~~~~~A~~VILaAGai~T  290 (370)
T d3coxa1         226 KTYLAQAAATGKLTITTLHRVTKVAPAT-GSGYSVTMEQI--DEQGNVV----ATKVVTADRVFFAAGSVGT  290 (370)
T ss_dssp             GTHHHHHHHTTCEEEECSEEEEEEEECS-SSSEEEEEEEE--CTTSCEE----EEEEEEEEEEEECSHHHHH
T ss_pred             HHHHHHHHhCCCcEEEecCcEEEEEEcC-CCeEEEEEEEe--CCcccee----eEEEEECCEEEEeeCHHHh
Confidence            33456677766 8999999999999974 44445544321  1334321    0136999999999996543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.40  E-value=0.01  Score=40.06  Aligned_cols=52  Identities=17%  Similarity=0.196  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEE-cCEEEEc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELH-AKVTIFA  135 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~-Ak~VI~A  135 (165)
                      .+-+++.+..++.||++++++.|+++...+++.+ -|.+.+               |..+. +|.||.|
T Consensus        64 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~v~~~~---------------G~~~~~~D~Vi~A  116 (117)
T d1onfa2          64 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSD---------------GRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE-EEEETT---------------SCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE-EEEECC---------------CCEEEeCCEEEEe
Confidence            5566777778889999999999999987656654 467765               34564 5999987

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.39  E-value=0.0033  Score=42.29  Aligned_cols=53  Identities=19%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ++-+.+.+..++.||+++++++|+++.   ++.++  ....     +|.       +.++.||.||+|+|
T Consensus        63 ~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~--~~~~-----~~~-------~~~i~~D~vi~A~G  115 (115)
T d1lvla2          63 ELTAPVAESLKKLGIALHLGHSVEGYE---NGCLL--ANDG-----KGG-------QLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEE--EECS-----SSC-------CCEECCSCEEECCC
T ss_pred             hhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEE--EEEc-----CCC-------eEEEEcCEEEEecC
Confidence            466777888889999999999999882   44322  2221     121       24799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.32  E-value=0.0038  Score=42.98  Aligned_cols=57  Identities=18%  Similarity=0.088  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .+-+.|.+..++.|++++++++++++..++++.  -|.+..    .+|+.       .++.||.|++|.|
T Consensus        68 ~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~--~v~~~~----~~g~~-------~~i~~D~vl~A~G  124 (125)
T d1ojta2          68 DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGV--YVTFEG----ANAPK-------EPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHGGGEEEEECSCEEEEEEEETTEE--EEEEES----SSCCS-------SCEEESCEEECCC
T ss_pred             hHHHHHHHHHHHcCcccccCcEEEEEEEcCCcE--EEEEEe----CCCCe-------EEEEcCEEEEecC
Confidence            556677888889999999999999998864442  244433    23332       3699999999998

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.30  E-value=0.003  Score=46.25  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=42.6

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+...+.-+...+.+.++++|++|+++++|++|..+ ++++. |.+.+     +|+       ..++.||.||+|.|++.
T Consensus       213 ~~~~~~~g~~~~~~~l~~~~g~~i~~~~~V~~I~~~-~~~~~-v~~~~-----~~~-------~~~~~ad~VV~a~p~~~  278 (347)
T d2ivda1         213 ALSTFDGGLQVLIDALAASLGDAAHVGARVEGLARE-DGGWR-LIIEE-----HGR-------RAELSVAQVVLAAPAHA  278 (347)
T ss_dssp             CEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC---CCE-EEEEE-----TTE-------EEEEECSEEEECSCHHH
T ss_pred             cccccCCchHHHHHHHHHHhhcccccCCEEEEEEEe-CCeEE-EEEEc-----CCe-------EEEEECCEEEECCCHHH
Confidence            333334444555555566789999999999999886 44444 33332     121       24799999999999653

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.28  E-value=0.0022  Score=50.47  Aligned_cols=65  Identities=20%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHCC-CEEecCCceeEEEEcCCC-cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcc
Q psy9486          69 VVKWLGEQAEAMG-VEIYPGIPASEVLYHGDG-SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGH  141 (165)
Q Consensus        69 ~d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g-~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~  141 (165)
                      .+..+...|++.| ++|++++.|++|+.++++ ..++|+..+    .+|...    .-.+++||.||+|+|+-.+
T Consensus       220 ~~~~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~----~~~~~~----~~~~i~Ak~VVLaAGai~T  286 (367)
T d1n4wa1         220 LDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKD----TDGKLL----ATKEISCRYLFLGAGSLGS  286 (367)
T ss_dssp             TTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEEC----TTCCEE----EEEEEEEEEEEECSHHHHH
T ss_pred             hhHhhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEEC----CCCcce----eEEEEecCEEEEecchhcC
Confidence            3444567788887 999999999999997544 455665544    233211    0136899999999997654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.25  E-value=0.026  Score=41.32  Aligned_cols=75  Identities=24%  Similarity=0.310  Sum_probs=53.0

Q ss_pred             CCcEEEEhHHHHHHHHHHHHH--CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcc
Q psy9486          59 HGNYVVRLGHVVKWLGEQAEA--MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAE  136 (165)
Q Consensus        59 ~~~~~i~r~~~d~~L~~~A~~--~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~  136 (165)
                      ...+...+.....++...+.+  .++.+..+++++.+..+ ++.+ .|.+.+    .+|+.       .++.|++||.|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~v-~v~~~~----g~~~~-------~~~~ad~vi~AD  162 (288)
T d3c96a1          96 YPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEER-DGRV-LIGARD----GHGKP-------QALGADVLVGAD  162 (288)
T ss_dssp             SCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEE-TTEE-EEEEEE----TTSCE-------EEEEESEEEECC
T ss_pred             CcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeec-CCcE-EEEEEc----CCCCe-------EEEeeceeeccC
Confidence            445667777777666665544  68999999999998875 4544 355543    23322       479999999999


Q ss_pred             cCCcccchHH
Q psy9486         137 GCHGHLTKSL  146 (165)
Q Consensus       137 G~~s~l~~~l  146 (165)
                      |.+|.+.+.+
T Consensus       163 G~~S~vr~~~  172 (288)
T d3c96a1         163 GIHSAVRAHL  172 (288)
T ss_dssp             CTTCHHHHHH
T ss_pred             Cccceeeeee
Confidence            9999886663

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.22  E-value=0.0016  Score=52.42  Aligned_cols=76  Identities=20%  Similarity=0.349  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCC---cEEEEEEccccccCCCCCCCCCCcCeEEEcCE-EEEcccCCcc--
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG---SVKGIATGDVGIAKDGSPKDTFARGMELHAKV-TIFAEGCHGH--  141 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g---~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~-VI~A~G~~s~--  141 (165)
                      ....++...++..+++|++++.|++|++++++   +++||+..+    .+|+.       .+++|+. ||+|.|+-.+  
T Consensus       226 s~~~~~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~----~~g~~-------~~v~A~keVILsAGAi~SP~  294 (385)
T d1cf3a1         226 AAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT----HKGNT-------HNVYAKHEVLLAAGSAVSPT  294 (385)
T ss_dssp             HHHHHTGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE----ETTEE-------EEEEEEEEEEECSCTTTHHH
T ss_pred             hhhhhcCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEc----CCCCE-------EEEEeCCEEEEcCchhhCHH
Confidence            44556666667789999999999999997543   799998754    24432       3688875 9999997542  


Q ss_pred             ------c-chHHHhhcCCCC
Q psy9486         142 ------L-TKSLSSRFNLRG  154 (165)
Q Consensus       142 ------l-~~~l~~~~gl~~  154 (165)
                            + .+..++++|+..
T Consensus       295 LLl~SGIGp~~~L~~~gI~~  314 (385)
T d1cf3a1         295 ILEYSGIGMKSILEPLGIDT  314 (385)
T ss_dssp             HHHHTTBSCHHHHGGGTCCC
T ss_pred             HHHhcCCCcHHHHHHCCCCe
Confidence                  1 245556677653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.22  E-value=0.0054  Score=46.73  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+...+..++.|+.+.++..++.++.++.+.++..+ ++++.|+......+...... .....+..+.|+.||+|+|..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~-~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         108 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHT-QSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTT-SSCCCCEEEEEEEEEECCCSSS
T ss_pred             eecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecc-cccccceeeccceEEECcCCCc
Confidence            344567789999999999999999999999999996 68899986643211111111 1112346899999999999887


Q ss_pred             ccchHHHhhc
Q psy9486         141 HLTKSLSSRF  150 (165)
Q Consensus       141 ~l~~~l~~~~  150 (165)
                      .....+.+++
T Consensus       186 ~~~~~~~~~~  195 (278)
T d1rp0a1         186 PFGATGVKRL  195 (278)
T ss_dssp             TTTTHHHHHH
T ss_pred             ccccchhhhc
Confidence            7665554444

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.18  E-value=0.0053  Score=41.85  Aligned_cols=50  Identities=24%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA  135 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A  135 (165)
                      .+-.++.+..++.||++++++.++++.-  ++++..|.+.                |.++.||.||+|
T Consensus        73 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~--~~~~~~v~~d----------------g~~i~~D~vi~a  122 (123)
T d1nhpa2          73 EFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVVTD----------------KNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEES----------------SCEEECSEEEEC
T ss_pred             hhHHHHHHHhhcCCeEEEeCceEEEEEc--CCCEEEEEeC----------------CCEEECCEEEEE
Confidence            4667778888899999999999999864  4666666543                358999999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.13  E-value=0.0054  Score=41.63  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          67 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        67 ~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .++-+++.+..++.||++++++.++++.-  +    +|.++                +..+.||.||.|+|.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~----~v~~~----------------~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTN----------------SGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEET----------------TEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--C----EEEeC----------------CCEEECCEEEEEEEe
Confidence            35666778888899999999999998732  2    45444                258999999999994

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=96.00  E-value=0.004  Score=49.55  Aligned_cols=63  Identities=21%  Similarity=0.339  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHH-CCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEc-CEEEEcccCCc
Q psy9486          68 HVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHA-KVTIFAEGCHG  140 (165)
Q Consensus        68 ~~d~~L~~~A~~-~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~A-k~VI~A~G~~s  140 (165)
                      ....+| ..|.+ .+++|++++.|++|+++ +++++||+..+....+++        -..+.| +-||+|.|+-.
T Consensus       192 ~~~~yl-~~a~~r~nl~i~t~~~V~rI~~d-~~ra~GV~~~~~~~~~~~--------~~~v~a~~eVILsAGai~  256 (360)
T d1kdga1         192 PVATYL-QTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNG--------FIPVTPKGRVILSAGAFG  256 (360)
T ss_dssp             HHHTHH-HHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGG--------EEEEEEEEEEEECSHHHH
T ss_pred             ccchhh-hhhhcccccccccCcEEEEEEEe-CCEEEEEEEEecccCcce--------EEEEEECCEEEEechhHh
Confidence            444454 44555 56899999999999997 789999999752211111        124555 44999999544

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=95.77  E-value=0.0018  Score=52.42  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEecCCceeEEEEcCC---CcEEEEEEccccccCCCCCCCCCCcCeEEEcCE-EEEcccCCcc
Q psy9486          66 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD---GSVKGIATGDVGIAKDGSPKDTFARGMELHAKV-TIFAEGCHGH  141 (165)
Q Consensus        66 r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~---g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~-VI~A~G~~s~  141 (165)
                      +.....++...+.+.+++|++++.|++|+++++   .+++||+..+    .+|..       .+++|+. ||+|.|+-.+
T Consensus       230 ~s~a~~~~~p~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~----~~g~~-------~~v~A~keVILaAGai~S  298 (391)
T d1gpea1         230 VDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGT----NKAVN-------FDVFAKHEVLLAAGSAIS  298 (391)
T ss_dssp             CCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEE----ETTEE-------EEEEEEEEEEECSCTTTH
T ss_pred             cchhhhccCccccchhhhhhccceeeEEeeeCCCCCceEEeeEEec----CCCeE-------EEEEeCCEEEEecchhcc
Confidence            334555666666678999999999999998632   2799998764    23322       3688976 9999997543


Q ss_pred             cc---------hHHHhhcCCC
Q psy9486         142 LT---------KSLSSRFNLR  153 (165)
Q Consensus       142 l~---------~~l~~~~gl~  153 (165)
                      -.         +..++++|+.
T Consensus       299 P~LLl~SGIGp~~~L~~~gI~  319 (391)
T d1gpea1         299 PLILEYSGIGLKSVLDQANVT  319 (391)
T ss_dssp             HHHHHHTTEECHHHHHHTTCC
T ss_pred             hHHHHhcCCCcHHHHHHCCCC
Confidence            21         3445667765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.27  E-value=0.02  Score=38.83  Aligned_cols=60  Identities=13%  Similarity=0.233  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCC--cEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG--SVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g--~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      ++.+++.+..++.||+|++++.|+++...+++  ....|....    .++..      ...+.+|.|+.|.|
T Consensus        61 ~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~----~~~~~------~~~~~~D~vl~AiG  122 (122)
T d1h6va2          61 DMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKS----TNSEE------TIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEEC----TTSCE------EEEEEESEEECCCC
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEE----CCCCc------EEEEECCEEEEEeC
Confidence            45678888899999999999999999764332  122333332    11111      13567899999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.24  E-value=0.036  Score=36.82  Aligned_cols=54  Identities=17%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEc
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFA  135 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A  135 (165)
                      .+-+.+.+..++.|++|++++.|+++..++++ +. |....     +|+       ..++.||.||+.
T Consensus        64 ~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~-~~-v~~~~-----~g~-------~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLKKKGVEVVTNALAKGAEEREDG-VT-VTYEA-----NGE-------TKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEETTE-EE-EEEEE-----TTE-------EEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-EE-EEEEe-----CCC-------EEEEEeEEEEEC
Confidence            46677788888999999999999999876433 22 33322     222       246999999873

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.013  Score=44.00  Aligned_cols=52  Identities=15%  Similarity=-0.045  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ..+....+++.|++|+++++|++|..+ +++| .|++.+               |..++||.||.|...
T Consensus       210 ~~~~~~l~~~~g~~i~~~~~v~~I~~~-~~~v-~v~~~~---------------g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         210 GQVSERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLN---------------HEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHHHHHHGGGEEESCCEEEEECS-SSSE-EEEETT---------------SCEEEESEEEECSCG
T ss_pred             hHHHHHHHHHcCCeEEecCcceEEEec-CCeE-EEEECC---------------CCEEECCEEEECCCH
Confidence            334444567789999999999999875 4555 477765               468999999999875

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.09  E-value=0.026  Score=41.83  Aligned_cols=52  Identities=8%  Similarity=-0.029  Sum_probs=36.6

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      ...+++.|++|+++++|++|..+ ++++.. ....    .+|+       +..+.||.||+|.+.
T Consensus       242 ~~l~~~~g~~i~~~~~V~~I~~~-~~~v~v-~~~~----~~~~-------~~~~~aD~VI~A~p~  293 (370)
T d2iida1         242 TAMYRDIQDKVHFNAQVIKIQQN-DQKVTV-VYET----LSKE-------TPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHHHHTGGGEESSCEEEEEEEC-SSCEEE-EEEC----SSSC-------CCEEEESEEEECSCH
T ss_pred             HHHHHhcCCccccCceEEEEEEe-CCeEEE-EEEe----cCCC-------eEEEEeeEEEecCCH
Confidence            33457789999999999999986 455442 2221    1222       358999999999874

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=94.75  E-value=0.024  Score=43.58  Aligned_cols=63  Identities=14%  Similarity=0.346  Sum_probs=45.3

Q ss_pred             HCCCEEecCCceeEEEEcC-CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCC
Q psy9486          79 AMGVEIYPGIPASEVLYHG-DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus        79 ~~Gv~i~~~~~v~~i~~~~-~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~  153 (165)
                      ..|++|++++.|++|++++ +++++||+..+.   .+|+.       ..++||.||+|.|+..  +.+|+-.-++.
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~---~~g~~-------~~i~a~~vilaaGa~~--tp~lL~~Sg~~  293 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDL---ISGDR-------FEIKADVYVLTAGAVH--NTQLLVNSGFG  293 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEET---TTCCE-------EEEEEEEEEECSCHHH--HHHHHHHTTSS
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEEC---CCCEE-------EEEeceEEEeccCccC--CHHHHhhcccc
Confidence            4578999999999999964 358999987651   23432       3789999999999655  44555444443

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=94.63  E-value=0.0079  Score=47.67  Aligned_cols=59  Identities=15%  Similarity=0.308  Sum_probs=42.2

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCC--CcEEEEEEccccccCCCCCCCCCCcCeEEEcC-EEEEcccCCc
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGD--GSVKGIATGDVGIAKDGSPKDTFARGMELHAK-VTIFAEGCHG  140 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~--g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak-~VI~A~G~~s  140 (165)
                      +...|.+.+++|++++.|++|++++.  .+++||+..+    .+|...     ...++|+ .||+|.|+-.
T Consensus       200 ~l~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~----~~g~~~-----~~~v~a~~eVILsAGaI~  261 (351)
T d1ju2a1         200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRD----SNGTPH-----QAFVRSKGEVIVSAGTIG  261 (351)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEEC----TTSCEE-----EEEEEEEEEEEECCHHHH
T ss_pred             hhccchhhhhhhhccchhhceeeeccccceeeEEEEEe----CCCceE-----EEEeecCcEEEEeCcccc
Confidence            34556778999999999999999632  3899998875    344321     1236674 4999999643

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.44  E-value=0.042  Score=42.32  Aligned_cols=63  Identities=21%  Similarity=0.169  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHCCCEEecCCceeEEEEcC--CCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCccc
Q psy9486          70 VKWLGEQAEAMGVEIYPGIPASEVLYHG--DGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHL  142 (165)
Q Consensus        70 d~~L~~~A~~~Gv~i~~~~~v~~i~~~~--~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l  142 (165)
                      .......+...++.++..+.+.+++...  ++.|+++...+.   ++|+.       ..|+||.||+|+|..+.+
T Consensus       155 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~---~~G~~-------~~i~Ak~VILATGG~~~~  219 (356)
T d1jnra2         155 IIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSV---REPKF-------YVFKAKAVILATGGATLL  219 (356)
T ss_dssp             HHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEES---SSSCE-------EEEECSEEEECCCCBCSS
T ss_pred             HHHHHHHhhhcceEEEEEEEEEEeeeecccccceeeeEEEEe---ecCcE-------EEeeCCEEEEcCCCcccc
Confidence            3344455566788999999999988632  356777655431   35544       379999999999988754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.54  E-value=0.075  Score=37.33  Aligned_cols=67  Identities=19%  Similarity=0.150  Sum_probs=44.6

Q ss_pred             HHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          71 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        71 ~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      .+....|.+.+++++......++..+ ++++.+++....-.+++|.....=....+|.||.||+|-|.
T Consensus        87 ~~~~~~a~~~~~~~~~~~~~~ei~~~-~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3          87 PEEVELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             hhheeecccccceeEeccccEEEEec-CCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            45667788899999999999998875 68888876543222334432100001135899999999883

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.017  Score=42.46  Aligned_cols=60  Identities=18%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCC
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR  153 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~  153 (165)
                      ...+++.||+++++++|+.|..+ +.   .|.+.+               |.+|.++.+|+|+|+.... -.+....|+.
T Consensus        90 ~~~~~~~gI~~~~g~~V~~id~~-~~---~V~l~d---------------G~~i~~d~lViAtG~~~~~-~~l~~~~gl~  149 (213)
T d1m6ia1          90 LPHIENGGVAVLTGKKVVQLDVR-DN---MVKLND---------------GSQITYEKCLIATGGTEPN-VELAKTGGLE  149 (213)
T ss_dssp             TTTSTTCEEEEEETCCEEEEEGG-GT---EEEETT---------------SCEEEEEEEEECCCEEEEC-CTTHHHHTCC
T ss_pred             HHHHHHCCeEEEeCCEEEEeecc-Cc---eeeecc---------------ceeeccceEEEeeeeecch-hhhhhccchh
Confidence            34567899999999999999654 23   467765               5689999999999965432 1333445664

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.043  Score=38.06  Aligned_cols=48  Identities=19%  Similarity=0.267  Sum_probs=33.8

Q ss_pred             HHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccC
Q psy9486          73 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGC  138 (165)
Q Consensus        73 L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~  138 (165)
                      +....+..||++++++.+.++.  ++|.    ....     +|+       ...+.||.||+|.|.
T Consensus       114 ~~~~~~~~gv~~~~~~~v~~i~--~~gv----~~~~-----~g~-------e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         114 HRTTLLSRGVKMIPGVSYQKID--DDGL----HVVI-----NGE-------TQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEE--TTEE----EEEE-----TTE-------EEEECCSEEEECCCE
T ss_pred             HHHHHhhCCeEEEeeeEEEEEc--CCCC----EEec-----CCe-------EEEEECCEEEECCCC
Confidence            4666788999999999999873  3443    2221     221       136999999999993

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.22  E-value=0.14  Score=37.18  Aligned_cols=53  Identities=17%  Similarity=0.041  Sum_probs=40.6

Q ss_pred             HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHH
Q psy9486          77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSL  146 (165)
Q Consensus        77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l  146 (165)
                      +...++.++.+..+.++..+ +..+ -|.+.+               |.+++++++|.|+|.+|.+...+
T Consensus       106 ~~~~~~~~~~~~~v~~~~~~-~~~v-~v~~~d---------------G~~~~~d~~v~adG~~s~~r~~~  158 (265)
T d2voua1         106 ELFGPERYHTSKCLVGLSQD-SETV-QMRFSD---------------GTKAEANWVIGADGGASVVRKRL  158 (265)
T ss_dssp             HHHCSTTEETTCCEEEEEEC-SSCE-EEEETT---------------SCEEEESEEEECCCTTCHHHHHH
T ss_pred             HhcccceeecCcEEEEEEee-CCce-EEEECC---------------CCEEEEEEEeccccccccccccc
Confidence            34568899999999999875 3333 356654               46899999999999999886553

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.84  E-value=0.19  Score=41.95  Aligned_cols=61  Identities=11%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             EEEEh---HHHHHHHHHHHHHCCCEEecCCceeEEEEc-CCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          62 YVVRL---GHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        62 ~~i~r---~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~-~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      |+...   +++-+.+.+.|.=.|..+..++.|.+|+++ +++++.+|...+               |.+++|+.||....
T Consensus       368 flyp~YG~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~---------------g~~i~~k~vI~~ps  432 (491)
T d1vg0a1         368 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQF---------------GQRIISKHFIIEDS  432 (491)
T ss_dssp             EEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETT---------------SCEEECSEEEEEGG
T ss_pred             eEeecCCcchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccC---------------CcEEecCeEEECHH
Confidence            44443   488999999999999999999999999995 467888988875               57899999987653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.51  Score=31.62  Aligned_cols=57  Identities=18%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHCC-CEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          70 VKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        70 d~~L~~~A~~~G-v~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      +..+.+++++.+ +++++++.+.++.-+ ++.+.+|+..+.   ++|+.       .++.++.|.++-|
T Consensus        68 ~~~~~~~~~~~~~I~v~~~~~v~~i~G~-~~~v~~v~l~~~---~tge~-------~~l~vdgvFv~IG  125 (126)
T d1fl2a2          68 DQVLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDR---VSGDI-------HNIELAGIFVQIG  125 (126)
T ss_dssp             CHHHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEEEEET---TTCCE-------EEEECSEEEECSC
T ss_pred             ccccccccccccceeEEcCcceEEEEcc-ccceeeEEEEEC---CCCCE-------EEEECCEEEEEeC
Confidence            355677787754 999999999999774 568999988752   34543       4789999988866

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.54  E-value=0.03  Score=40.39  Aligned_cols=52  Identities=17%  Similarity=0.255  Sum_probs=38.5

Q ss_pred             CcEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          60 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        60 ~~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      ..++++-..+..||.+++++.|++|+.+ +|+++.             +               .....+++||.|+|.+
T Consensus       135 ~~~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~-------------~---------------~~~~~~d~vVnctG~~  185 (246)
T d1kifa1         135 TSLILEGRKYLQWLTERLTERGVKFFLR-KVESFE-------------E---------------VARGGADVIINCTGVW  185 (246)
T ss_dssp             EEEEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHH-------------H---------------HHHTTCSEEEECCGGG
T ss_pred             cceEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHH-------------H---------------hccCCCCEEEECCccc
Confidence            3578899999999999999999998654 233321             1               0134578999999988


Q ss_pred             c
Q psy9486         140 G  140 (165)
Q Consensus       140 s  140 (165)
                      +
T Consensus       186 a  186 (246)
T d1kifa1         186 A  186 (246)
T ss_dssp             H
T ss_pred             c
Confidence            7

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.00  E-value=3.1  Score=27.42  Aligned_cols=51  Identities=18%  Similarity=0.134  Sum_probs=37.5

Q ss_pred             HHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEccc
Q psy9486          77 AEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEG  137 (165)
Q Consensus        77 A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G  137 (165)
                      .+..++.+++++.+.+|.-+ +..+.+|+..+.   ++++..      .++.++-|+++-|
T Consensus        76 ~~~~~i~~~~~~~v~~i~G~-~~~v~~v~l~~~---~~~e~~------~~l~~dgvFv~iG  126 (126)
T d1trba2          76 VENGNIILHTNRTLEEVTGD-QMGVTGVRLRDT---QNSDNI------ESLDVAGLFVAIG  126 (126)
T ss_dssp             HHTSSEEEECSCEEEEEEEC-SSSEEEEEEECC---TTCCCC------EEEECSEEEECSC
T ss_pred             hcccceeEecceEEEEEECC-CCceEEEEEEEC---CCCceE------EEEECCEEEEEeC
Confidence            34478999999999999875 567999988762   233322      4688999988765

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.78  E-value=0.59  Score=32.77  Aligned_cols=53  Identities=17%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             HHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          74 GEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        74 ~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+..++.|+++++++.|+++..+ ++.| -++...     +|+.       .++.+|.+|+|+|...
T Consensus        63 ~~~l~~~gi~v~~~~~V~~i~~~-~~~v-~~~~~~-----~g~~-------~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          63 GEKMESRGVNVFSNTEITAIQPK-EHQV-TVKDLV-----SGEE-------RVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHHTTCEEEETEEEEEEETT-TTEE-EEEETT-----TCCE-------EEEECSEEEECCCEEE
T ss_pred             HHHHHHCCcEEEEeeceeeEeec-cccc-eeeecc-----cccc-------cccccceeeEeeccee
Confidence            44566789999999999999764 3332 233222     3321       3688999999999754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.76  E-value=0.58  Score=31.61  Aligned_cols=57  Identities=18%  Similarity=0.144  Sum_probs=40.1

Q ss_pred             HHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCcccchHHHhhcCCCC
Q psy9486          75 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRG  154 (165)
Q Consensus        75 ~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s~l~~~l~~~~gl~~  154 (165)
                      +..++.|+++++++.|+.+..  +.+++   +.+               +.++.++.+|.|+|...   ..+.+..|+..
T Consensus        60 ~~~~~~~v~~~~~~~v~~i~~--~~~~~---~~~---------------~~~i~~D~li~a~G~~~---~~~~~~~gl~~  116 (167)
T d1xhca1          60 DWYRKRGIEIRLAEEAKLIDR--GRKVV---ITE---------------KGEVPYDTLVLATGAPN---VDLARRSGIHT  116 (167)
T ss_dssp             HHHHHHTEEEECSCCEEEEET--TTTEE---EES---------------SCEEECSEEEECCCEEC---CHHHHHTTCCB
T ss_pred             HHHHhccceeeeecccccccc--ccccc---ccc---------------ccccccceeEEEEEecC---CchhhhcCcee
Confidence            344567999999999998843  34432   222               24899999999999764   45667778754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=83.88  E-value=0.3  Score=35.03  Aligned_cols=24  Identities=13%  Similarity=0.250  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHCCCEEecCCcee
Q psy9486          68 HVVKWLGEQAEAMGVEIYPGIPAS   91 (165)
Q Consensus        68 ~~d~~L~~~A~~~Gv~i~~~~~v~   91 (165)
                      ++-+|+.+++++.||+|++++.|+
T Consensus        96 ~~~~~~~~~~~~~gV~i~l~~~Vt  119 (179)
T d1ps9a3          96 ETLRYYRRMIEVTGVTLKLNHTVT  119 (179)
T ss_dssp             HHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             HHHHHHHHhhhcCCeEEEeCCEEc
Confidence            566788999999999999988764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.92  E-value=1.7  Score=30.13  Aligned_cols=58  Identities=17%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             EEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCC
Q psy9486          63 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCH  139 (165)
Q Consensus        63 ~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~  139 (165)
                      .++..++...+.+++++.|+++..+ .|.++...  ++..-+.+..                .++.++.++.|.|..
T Consensus        63 ~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~--~~~~~v~~~~----------------~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          63 GILGVELTDKFRKQSERFGTTIFTE-TVTKVDFS--SKPFKLFTDS----------------KAILADAVILAIGAV  120 (192)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECS--SSSEEEECSS----------------EEEEEEEEEECCCEE
T ss_pred             cccchHHHHHHHHHHHhhcceeeee-eEEecccc--cCcEEecccc----------------eeeeeeeEEEEeeee
Confidence            4667788888899999999999866 68887654  3323455543                479999999999964

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=82.69  E-value=0.85  Score=31.39  Aligned_cols=43  Identities=26%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             HCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          79 AMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        79 ~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      ..+++++++++|+++..+  ..  .+.+.+               |.++.+|.||.|+|...
T Consensus        67 ~~~i~~~~~~~v~~i~~~--~~--~~~~~~---------------g~~~~~D~vi~a~G~~p  109 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQ--AH--TVALSD---------------GRTLPYGTLVLATGAAP  109 (183)
T ss_dssp             STTCEEEETCCEEEEETT--TT--EEEETT---------------SCEEECSEEEECCCEEE
T ss_pred             cCCeEEEEeccccccccc--cc--eeEecC---------------CcEeeeeeEEEEEEEEc
Confidence            468999999999988653  33  345554               46899999999999654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=80.88  E-value=0.21  Score=35.61  Aligned_cols=51  Identities=12%  Similarity=0.169  Sum_probs=37.0

Q ss_pred             cEEEEhHHHHHHHHHHHHHCCCEEecCCceeEEEEcCCCcEEEEEEccccccCCCCCCCCCCcCeEEEcCEEEEcccCCc
Q psy9486          61 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPKDTFARGMELHAKVTIFAEGCHG  140 (165)
Q Consensus        61 ~~~i~r~~~d~~L~~~A~~~Gv~i~~~~~v~~i~~~~~g~V~GV~~~~~g~~~~g~~~~~~~~g~~i~Ak~VI~A~G~~s  140 (165)
                      .+.++-..|..+|.+.+++.|+.|... +|+++              +               .....|+.||+|+|.++
T Consensus       136 ~~~~d~~~~~~~l~~~~~~~Gv~i~~~-~v~~~--------------~---------------~~~~~~~~vv~a~G~~a  185 (268)
T d1c0pa1         136 TLSVHAPKYCQYLARELQKLGATFERR-TVTSL--------------E---------------QAFDGADLVVNATGLGA  185 (268)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEEC-CCSBG--------------G---------------GTCSSCSEEEECCGGGG
T ss_pred             ceecCHHHHHHHHHHHHHHCCCEEEEe-Eecch--------------H---------------HccccceEEEECCchhh
Confidence            456888899999999999999998643 12111              1               12356899999999886


Q ss_pred             c
Q psy9486         141 H  141 (165)
Q Consensus       141 ~  141 (165)
                      .
T Consensus       186 ~  186 (268)
T d1c0pa1         186 K  186 (268)
T ss_dssp             G
T ss_pred             h
Confidence            4