Psyllid ID: psy9492

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
Protein Sequence
MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV
Secondary Structure (PSIPRED)
ccHHHHHHcccccHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccEEEEccccHHHcHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccEEcccccEEEEEccccccccEEEc
Coil and Loop (DISEMBL)
mehwrgvkNWYEFELTKVFVGKCVeagqdvnepdseTVTLLHWAAINNRIEIMKYFISQGAIVDaiggdlqatplhwatrqgHLDSVVLLIQhgadptlmdsegstciHQAAQFGHTRIVAYLVAKGInvnlqdrngMTALMWSAYKvfsldptrllitFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHtssleipnaqgltpfmlleenigapwlgkaTVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMfderlfkilplpvyfaTKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFikcwkgdpgvitapqdEKFRYIIELAergtfeplsfcstclvrkpirskhcsicnrcvakfdhhcpwvgncigaknhKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTtnermnanryhhfianpqgqfispfhrgrlqnfvdftgwscfglfkperidwmkryevyteptslsdkyqfv
Flexible Loop (DISEMBL)
mehwrgvknwyefELTKVFVGKCVEAGQdvnepdsetVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKdhyntqqniihrfsksktTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAergtfeplsfCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEvyteptslsdkyqfv
Low Complexity Region (SEG)
MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPvvnffvsllffstsgvlWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV
Disordered region (IsUnstruct)
***WRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYT************
Disordered Region (DISOPRED)
MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNA*****************FHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSL****QFV
Disordered Region (DISEMBL)
MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV
Disordered Region (DISPRO)
***WRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKY*F*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKRYEVYTEPTSLSDKYQFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	584	2.2.26 [Sep-21-2011]
Q80TN5	632	Palmitoyltransferase ZDHH	yes	N/A	0.946	0.875	0.471	1e-155
Q8IUH5	632	Palmitoyltransferase ZDHH	yes	N/A	0.946	0.875	0.469	1e-155
Q5NVB9	622	Palmitoyltransferase ZDHH	no	N/A	0.902	0.847	0.388	1e-111
Q8IUH4	622	Palmitoyltransferase ZDHH	no	N/A	0.902	0.847	0.387	1e-109
Q9CWU2	622	Palmitoyltransferase ZDHH	no	N/A	0.924	0.868	0.388	1e-109
Q4R690	622	Palmitoyltransferase ZDHH	N/A	N/A	0.928	0.871	0.386	1e-108
Q6C520	702	Palmitoyltransferase AKR1	yes	N/A	0.796	0.662	0.316	2e-60
Q7S3M5	729	Palmitoyltransferase AKR1	N/A	N/A	0.833	0.668	0.311	1e-58
P0CS66	776	Palmitoyltransferase AKR1	yes	N/A	0.811	0.610	0.313	5e-57
P0CS67	776	Palmitoyltransferase AKR1	N/A	N/A	0.811	0.610	0.313	5e-57

>sp|Q80TN5|ZDH17_MOUSE Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zdhhc17 PE=1 SV=2

 Score =  550 bits (1417), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/564 (47%), Positives = 372/564 (65%), Gaps = 11/564 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct: 77  VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 136

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct: 137 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 196

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
           +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+    +++  N 
Sbjct: 197 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGGNVDAQNV 256

Query: 204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYN-TQQNIIHRFSKSKTTRARYMFALPF 262
           +G +   L ++     W+    ++ + E +        + + +    K  R + M   PF
Sbjct: 257 KGESALDLAKQRKNV-WM----INHLQEARQAKGYDNPSFLRKLKADKEFRQKVMLGTPF 311

Query: 263 VMFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIY 321
           ++  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y
Sbjct: 312 LVIWLVGFIADLDIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMY 371

Query: 322 ITWLFWITPVVNF-FVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERG 380
           +TW FW    +NF F+ L F + S  L+YNF K WK DPG+I A +++K + I+ELAE G
Sbjct: 372 VTWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETG 431

Query: 381 TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLF 440
           + +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LLF
Sbjct: 432 SLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLF 491

Query: 441 MCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLS 500
           M C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL 
Sbjct: 492 MICWMIYGCVSYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFLWVAVLLM 550

Query: 501 CQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPE 560
           CQLYQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P 
Sbjct: 551 CQLYQITCLGITTNERMNARRYKHFKVTTT-SIESPFNHGCVRNIIDFFEFRCCGLFRPV 609

Query: 561 RIDWMKRYEVYTEPTSLSDKYQFV 584
            +DW ++Y +  +  S S  YQ V
Sbjct: 610 IVDWTRQYTIEYDQISGSG-YQLV 632

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q8IUH5|ZDH17_HUMAN Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2

 Score =  548 bits (1412), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/564 (46%), Positives = 373/564 (66%), Gaps = 11/564 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct: 77  VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 136

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct: 137 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 196

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
           +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N 
Sbjct: 197 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 256

Query: 204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYN-TQQNIIHRFSKSKTTRARYMFALPF 262
           +G +   L ++     W+    ++ + E +        + + +    K  R + M   PF
Sbjct: 257 KGESALDLAKQRKNV-WM----INHLQEARQAKGYDNPSFLRKLKADKEFRQKVMLGTPF 311

Query: 263 VMFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIY 321
           ++  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y
Sbjct: 312 LVIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMY 371

Query: 322 ITWLFWITPVVNF-FVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERG 380
           +TW FW    +NF F+ L F + S  L+YNF K WK DPG+I A +++K + I+ELAE G
Sbjct: 372 VTWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETG 431

Query: 381 TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLF 440
           + +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LLF
Sbjct: 432 SLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLF 491

Query: 441 MCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLS 500
           M C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL 
Sbjct: 492 MICWMIYGCISYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLLM 550

Query: 501 CQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPE 560
           CQ+YQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P 
Sbjct: 551 CQMYQISCLGITTNERMNARRYKHFKVTTT-SIESPFNHGCVRNIIDFFEFRCCGLFRPV 609

Query: 561 RIDWMKRYEVYTEPTSLSDKYQFV 584
            +DW ++Y +  +  S S  YQ V
Sbjct: 610 IVDWTRQYTIEYDQISGSG-YQLV 632

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q5NVB9|ZDH13_PONAB Palmitoyltransferase ZDHHC13 OS=Pongo abelii GN=ZDHHC13 PE=2 SV=1

 Score =  403 bits (1036), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 317/571 (55%), Gaps = 44/571 (7%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VEAG DV +PD E V+LLHWAAINNR++++K++IS+GA+VD +GGDL +TPLHWA RQGH
Sbjct: 69  VEAGYDVRQPDKENVSLLHWAAINNRLDLVKFYISKGAVVDQLGGDLNSTPLHWAIRQGH 128

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L  V+LL+QHGADPTL+D EG + IH A  F H  I+AYL++KG +VN+ D NG T LM 
Sbjct: 129 LPMVILLLQHGADPTLIDGEGFSSIHLAVLFQHMPIIAYLISKGQSVNMTDVNGQTPLML 188

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
           SA+KV   +PT  L+ F  S  + DKIH N  LHWA+ A N  A+  L+   SSL+I N 
Sbjct: 189 SAHKVIGPEPTGFLLKFNPSLNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGSSLDIQNV 248

Query: 204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFAL--- 260
           +G TP  +  +                      N  Q IIH        RA   F L   
Sbjct: 249 KGETPLDMALQ----------------------NKNQLIIHMLKTEAKMRANQKFRLWRW 286

Query: 261 -----PFVMFGL-------IGFIFQ-AQIAYMAKLALFISLYIVMQVIGTVMFDERLFKI 307
                 F++  L       +G+I      +++ K  L ++L+ +  +    +   +    
Sbjct: 287 LQKCELFLLLMLSVITMWAVGYILDFNSDSWLLKGCLLVTLFFLTSLFPRFLVGYKNLVY 346

Query: 308 LPLPVYFATKFWIYITWLFWITPVVN---FFVSLLFFSTSGVLWYNFIKCWKGDPGVITA 364
           LP     ++ FWI++TW     P +    F+ S + FS    L++ F K W  DPG   A
Sbjct: 347 LPTAFLLSSVFWIFMTWFILFFPDLAGAPFYFSFI-FSIVAFLYF-FYKTWATDPGFTKA 404

Query: 365 PQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIG 424
            ++EK   II LAE G+ +  +FC++CL+RKP+RS HC +CN CVA++D HC W G CIG
Sbjct: 405 SEEEKKVNIITLAETGSLDFRTFCTSCLIRKPLRSLHCHVCNSCVARYDQHCLWTGRCIG 464

Query: 425 AKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFI 484
             NH Y++ ++  L  +C +++YG   YW S C      E  +   +  ++ C  WV +I
Sbjct: 465 FGNHHYYIFFLFFLSMVCGWIIYGSFIYWSSHCATTFK-EDGLWTYLNQIVACSPWVLYI 523

Query: 485 LLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQN 544
           L+ A  H  W T LL  QL+QI  LG+T++ER++  +    +        +P++ G +QN
Sbjct: 524 LMLATFHFSWSTFLLLNQLFQIAFLGLTSHERISLQKQSKHMKQTLSLRKTPYNLGFMQN 583

Query: 545 FVDFTGWSCFGLFKPERIDWMKRYEVYTEPT 575
             DF    CFGL KP  +DW  +Y V   P 
Sbjct: 584 LADFFQCGCFGLVKPCVVDWTSQYTVVFHPA 614

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUH4|ZDH13_HUMAN Palmitoyltransferase ZDHHC13 OS=Homo sapiens GN=ZDHHC13 PE=2 SV=3

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 316/571 (55%), Gaps = 44/571 (7%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VEAG DV +PD E V+LLHWAAINNR++++K++IS+GA+VD +GGDL +TPLHWA RQGH
Sbjct: 69  VEAGYDVRQPDKENVSLLHWAAINNRLDLVKFYISKGAVVDQLGGDLNSTPLHWAIRQGH 128

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L  V+LL+QHGADPTL+D EG + IH A  F H  I+AYL++KG +VN+ D NG T LM 
Sbjct: 129 LPMVILLLQHGADPTLIDGEGFSSIHLAVLFQHMPIIAYLISKGQSVNMTDVNGQTPLML 188

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
           SA+KV   +PT  L+ F  S  + DKIH N  LHWA+ A N  A+  L+   SSL+I N 
Sbjct: 189 SAHKVIGPEPTGFLLKFNPSLNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGSSLDIQNV 248

Query: 204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFAL--- 260
           +G TP  +  +                      N  Q IIH        RA   F L   
Sbjct: 249 KGETPLDMALQ----------------------NKNQLIIHMLKTEAKMRANQKFRLWRW 286

Query: 261 -----PFVMFGL-------IGFIFQ-AQIAYMAKLALFISLYIVMQVIGTVMFDERLFKI 307
                 F++  L       IG+I      +++ K  L ++L+ +  +    +   +    
Sbjct: 287 LQKCELFLLLMLSVITMWAIGYILDFNSDSWLLKGCLLVTLFFLTSLFPRFLVGYKNLVY 346

Query: 308 LPLPVYFATKFWIYITWLFWITPVVN---FFVSLLFFSTSGVLWYNFIKCWKGDPGVITA 364
           LP     ++ FWI++TW     P +    F+ S + FS    L++ F K W  DPG   A
Sbjct: 347 LPTAFLLSSVFWIFMTWFILFFPDLAGAPFYFSFI-FSIVAFLYF-FYKTWATDPGFTKA 404

Query: 365 PQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIG 424
            ++EK   II LAE G+ +  +FC++CL+RKP+RS HC +CN CVA++D HC W G CIG
Sbjct: 405 SEEEKKVNIITLAETGSLDFRTFCTSCLIRKPLRSLHCHVCNCCVARYDQHCLWTGRCIG 464

Query: 425 AKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFI 484
             NH Y++ ++  L  +C +++YG   Y  S C      E  +   +  ++ C  WV +I
Sbjct: 465 FGNHHYYIFFLFFLSMVCGWIIYGSFIYLSSHCATTFK-EDGLWTYLNQIVACSPWVLYI 523

Query: 485 LLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQN 544
           L+ A  H  W T LL  QL+QI  LG+T++ER++  +    +        +P++ G +QN
Sbjct: 524 LMLATFHFSWSTFLLLNQLFQIAFLGLTSHERISLQKQSKHMKQTLSLRKTPYNLGFMQN 583

Query: 545 FVDFTGWSCFGLFKPERIDWMKRYEVYTEPT 575
             DF    CFGL KP  +DW  +Y +   P 
Sbjct: 584 LADFFQCGCFGLVKPCVVDWTSQYTMVFHPA 614

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CWU2|ZDH13_MOUSE Palmitoyltransferase ZDHHC13 OS=Mus musculus GN=Zdhhc13 PE=1 SV=2

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/558 (38%), Positives = 316/558 (56%), Gaps = 18/558 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VEAG DV +PD E V+LLHWAAINNR+E++K++IS+GA++D +GGDL +TPLHWA RQGH
Sbjct: 69  VEAGYDVRQPDRENVSLLHWAAINNRLELVKFYISKGAVIDQLGGDLNSTPLHWAIRQGH 128

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L  V+LL+QHGADPTL+D EG + IH A  F H  I+AYL++KG +VN+ D NG T LM 
Sbjct: 129 LPMVILLLQHGADPTLIDGEGFSSIHLAVLFQHMPIIAYLISKGQSVNMTDVNGQTPLML 188

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
           SAYKV   +PT  L+ F  S ++ DK H N  LHWA+ A N  A+  L+   SSL+I NA
Sbjct: 189 SAYKVIGPEPTGFLLKFNPSLSVVDKTHQNTPLHWAVAAGNVSAVDKLLEAGSSLDIRNA 248

Query: 204 QGLTPF-MLLEENIGAPWLGKATVDKI--TELKDHYNTQQNIIHRFSKSKTTRARYMFAL 260
           +G TP  M L+            +  +  TE K   N Q  +     K +      +  L
Sbjct: 249 KGETPLDMALQSK-------NQLISHMLRTEAKMRANKQFRLWRWLHKCELF---LLLIL 298

Query: 261 PFVMFGLIGFIFQ-AQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFW 319
             +    +G+I      +++ K  L ++L+ +  +    +   +    LP     ++ FW
Sbjct: 299 SMITLWAVGYILDFNSDSWLLKGCLLVALFFLTSLFPRFLVGYKNLVYLPTVFLLSSIFW 358

Query: 320 IYITW--LFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELA 377
           I++TW  LF+     +       FS    L++ F K W  DPG   A ++E+   I+ LA
Sbjct: 359 IFMTWFILFFPDTAGSPLYFAFIFSIMAFLYF-FYKTWATDPGFTKASEEERKVNIVTLA 417

Query: 378 ERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISS 437
           E G+ +  +FC++CL+RKP+RS HC +CN CVA+FD HC W G CIG  NH +++ ++ S
Sbjct: 418 ETGSLDFRTFCTSCLIRKPLRSLHCHVCNSCVARFDQHCFWTGRCIGFGNHHHYIFFLLS 477

Query: 438 LLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITV 497
           L  +C +++YG   YW + C      E  +   +  ++ C  WV +I + A  H  W T 
Sbjct: 478 LSMVCDWIIYGSFVYWSNHCATTFK-EDGLWTYLNQIVACSPWVLYIFMLAAFHFSWSTF 536

Query: 498 LLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLF 557
           LL  QL+QI  LG+T++ER++  +    +        +P++ G  QN  DF    CFGL 
Sbjct: 537 LLINQLFQIAFLGLTSHERISLLKQSRHMKQTLSLRKTPYNLGFTQNLADFFQCGCFGLV 596

Query: 558 KPERIDWMKRYEVYTEPT 575
           KP  IDW  +Y +   P 
Sbjct: 597 KPCIIDWTSQYTMVFHPA 614

Palmitoyltransferase for HD and GAD2. Mediates Mg(2+) transport.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q4R690|ZDH13_MACFA Palmitoyltransferase ZDHHC13 OS=Macaca fascicularis GN=ZDHHC13 PE=2 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 314/556 (56%), Gaps = 14/556 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VEAG DV +PD E V+LLHWAAINNR++++K++IS+GA+VD +GGDL +TPLHWA RQGH
Sbjct: 69  VEAGYDVRQPDKENVSLLHWAAINNRLDLVKFYISKGAVVDQLGGDLNSTPLHWAIRQGH 128

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L  V+LL+QHGADPTL D EG + IH A  F H  I+AYL++K  +VN+ D NG T LM 
Sbjct: 129 LPMVILLLQHGADPTLTDGEGFSSIHLAVLFQHMPIIAYLISKRQSVNMTDVNGQTPLML 188

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
           SA+KV   +PT  L+ F  S  + DKIH N  LHWA+ A N  A+  L+   SSL+I N 
Sbjct: 189 SAHKVIGPEPTGFLLKFNPSLNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGSSLDIQNV 248

Query: 204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFV 263
           +G TP  +  +N     +        TE K   N +  +     K +      +  L  +
Sbjct: 249 KGETPLDMALQNKNQLIIHMLK----TEAKMRTNQKFRLWRWLQKCELF---LLLMLSVI 301

Query: 264 MFGLIGFIFQ-AQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
               +G+I      +++ K  L ++L+ +  +    +   +    LP     ++ FWI++
Sbjct: 302 TMWAVGYILDFNSDSWLLKGCLLVTLFFLTSLFPRFLVGYKNLIYLPTAFLLSSIFWIFM 361

Query: 323 TWLFWITPVVN---FFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
           TW     P +    F+ S + FS    L++ F K W  DPG   A ++EK   II LAE 
Sbjct: 362 TWFILFFPDLAGAPFYFSFI-FSIVAFLYF-FYKTWATDPGFTKASEEEKKVNIITLAET 419

Query: 380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
           G  +  +FC++CL+RKP+RS HC +CN CVA++D HC W G CIG  NH Y++ ++  L 
Sbjct: 420 GCLDFRTFCTSCLIRKPLRSLHCHVCNSCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLS 479

Query: 440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
            +C +++YG   YW + C      E  +   +  ++ C  WV +IL+ A  H  W T LL
Sbjct: 480 MVCGWIIYGSFIYWSNHCATTFK-EDGLWTYLNQIVACSPWVLYILMLATFHFSWSTFLL 538

Query: 500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
             QL+QI  LG+T++ER++  +    +        +P++ G +QN  DF    CFGL KP
Sbjct: 539 LNQLFQIAFLGLTSHERISLLKQSKHMKQTLSLRKTPYNLGFMQNLADFFQCGCFGLVKP 598

Query: 560 ERIDWMKRYEVYTEPT 575
             +DW  +Y +   P 
Sbjct: 599 CVVDWTSQYTMVFHPA 614

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q6C520|AKR1_YARLI Palmitoyltransferase AKR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=AKR1 PE=3 SV=1

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/534 (31%), Positives = 252/534 (47%), Gaps = 69/534 (12%)

Query: 23  CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           C      V +   + VT LHWAA+NNRI   +Y + QGA+VDA GG L  TPLHWA R+G
Sbjct: 70  CESGSYSVLDTAEDGVTALHWAAVNNRISTCQYLVEQGAVVDAKGGQLNGTPLHWACRRG 129

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
            +  V  LIQ+GADP   D +G   +H A    +  ++ YL+ +G+ V+ QD NG TAL 
Sbjct: 130 LVYIVHYLIQNGADPLRSDVQGYNALHLATHSSNVMLLVYLLHQGLPVDCQDPNGRTALH 189

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 202
           W+AY+  +L    +L+ +G+   I D   G + LHW I   +  ++  L+   S +   +
Sbjct: 190 WAAYQGDALS-VDVLLRWGSDVKITD-TQGFLPLHWGIVNGSRNSLARLIEEGSDMYAKS 247

Query: 203 AQGLTP-FMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALP 261
           + G TP  M  E N  A   G   +D      D   +Q+    ++  ++TT     F  P
Sbjct: 248 SDGKTPHVMAAEMNTTAQLEG--ALDDCGRFPD--GSQKT---KYFDARTTNLLCFFT-P 299

Query: 262 FVMFGLIGFIFQAQIAYMAKLALFIS-LYIVMQVIGTVMFDERLFKILPLP--------- 311
           F++  L+G +          L  F   ++ ++  + T+    +L K L LP         
Sbjct: 300 FILI-LLGLV----------LCTFCGPIFGIILTVATLFGSIKLLKTLVLPSLYNGHAAL 348

Query: 312 --------VYFATKFWIYITWL-------FWITPVVNFFVSLLFFSTSGVLWYNFIKCWK 356
                   ++  + FW+ + +L       F   P++NFF + +F    G+  Y F +C  
Sbjct: 349 LKSPFQAGIFTGSAFWVTVKYLTSVLPATFASHPILNFFFASIF----GLAMYCFFRCMS 404

Query: 357 GDPGVITAPQD--EKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDH 414
            DPG I       E+   I  L ERG F+   FC    VRKP+RSK C    R VA+FDH
Sbjct: 405 MDPGYIPKLSGITEQKEVIETLIERGEFDTRHFCFVTYVRKPLRSKFCRQSKRVVARFDH 464

Query: 415 HCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDM 474
            CPWV N IG +NH+ FV Y+  L       L   + Y+    + +     E   V+W  
Sbjct: 465 FCPWVWNAIGVRNHRMFVLYVLFLQIGIPLWLALNSAYFGELLEIKRWDPLEFYLVIWIS 524

Query: 475 LQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIAN 528
           LQ                IWIT L   Q++QI    +TT+E +N  +Y +  A+
Sbjct: 525 LQL---------------IWITFLSFVQIFQICR-SLTTSEAVNLQKYGYMGAD 562

Palmitoyltransferase specific for casein kinase 1.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q7S3M5|AKR1_NEUCR Palmitoyltransferase AKR1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=akr-1 PE=3 SV=2

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 163/523 (31%), Positives = 252/523 (48%), Gaps = 36/523 (6%)

Query: 22  KCVEAGQ-DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
           K   AG+ D    D E +T LHWAAINN+  + K+ I +GA ++  GG+  ATPL WA +
Sbjct: 61  KLFAAGEYDATYSDDEGITPLHWAAINNQYAMCKFLIDKGAEINKKGGESVATPLQWAAQ 120

Query: 81  QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
           + H  +V LL+QHGADP + DS+G   +H +   G+  ++  L+ +GI V+++D  G TA
Sbjct: 121 RCHYYTVHLLLQHGADPLITDSQGYNTLHISTFNGNVLLIVLLLHQGIPVDVEDAYGHTA 180

Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI 200
           LMWSAYK F      + + +GAS   +D+  G  ALHWA+   +   I  L+ + +    
Sbjct: 181 LMWSAYKGFPAC-VDVFLRWGASVHAKDE-QGFTALHWALVKGSPGCIQKLIEYGADRFA 238

Query: 201 PNAQGLTPFMLLEE-NIGAPWLGKATVDKITELKDHYNTQQNII--------HRFSKSKT 251
             A G TP +  +E N  A W  +  +D+       Y+   N I        +     ++
Sbjct: 239 KTANGKTPAITAQELNTVAAW--QKALDECG-----YDEHGNAIVPSWPGASYLLQDRRS 291

Query: 252 TRARYMFALPFVMFGLIGFIFQAQIAY----MAKLALFISLYIVMQVIGTVMFDERLFKI 307
              ++ F  PFVM      +      +    +  LA +   ++  QVI     D R  + 
Sbjct: 292 FMTKFTFLWPFVMVWATMVVMAGMPVFVGIPLGVLAGYAVQWVAQQVIAYAPPDMRQLQK 351

Query: 308 LP--LPVYFATKFWIYITWLFWITPVVNF------FVSLLF-FSTSGVLWYNFIKCWKGD 358
            P    ++  + F   + WL  I     F        +LLF F  S  +W+ +I+C   D
Sbjct: 352 TPWMAGIFAGSLFLCIMNWLLHIFGSTMFGQDSAVIPNLLFAFFISMTIWF-YIRCMVDD 410

Query: 359 PGVIT--APQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHC 416
           PG +       E+   I EL     F+  +FC TC++R P+RSKHC  C RCVAK DHHC
Sbjct: 411 PGFVPKMGGVAEQKAVIDELISLWKFDESNFCVTCMIRTPLRSKHCRRCQRCVAKHDHHC 470

Query: 417 PWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQ 476
           PWV NCIG  NH++F  Y+ +L        +   +Y  +  +        +   +  ++ 
Sbjct: 471 PWVYNCIGVNNHRHFFFYLINLTLSVVTYDWLTYRYLSTLSETASDECNILAPSLCRIVN 530

Query: 477 CDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNA 519
            D +     + A +   W+++LL  Q  Q+ S  MTT E M+ 
Sbjct: 531 ADTYSLLTAIWASLQLTWVSMLLFVQFVQVSS-AMTTYENMHG 572

Palmitoyltransferase specific for casein kinase 1.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS66|AKR1_CRYNJ Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=AKR1 PE=3 SV=1

 Score =  222 bits (566), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 259/533 (48%), Gaps = 59/533 (11%)

Query: 34  DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
           D++ VT LHWAAIN  +   +  I  GA +DAIGG+L+ATPL WA R GHL  V LLI  
Sbjct: 101 DAQDVTPLHWAAINAHMGTCRLLIDSGADIDAIGGELKATPLQWAARNGHLYVVHLLISR 160

Query: 94  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
           GADP + DS+G   +H          + Y++ + + ++ +D +G TALMW+AY+  +L  
Sbjct: 161 GADPNIHDSQGFNTLHLITHSSAVMPLLYMLHQPVAIDEKDTDGHTALMWAAYQGDALS- 219

Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
             LLI  GAS    D   G   LHWA    N V+I  LV   +SL+     G TP  + E
Sbjct: 220 VDLLIRHGASVNSTDNA-GMTPLHWAAVKGNKVSIMHLVEAGASLDAKEEAGKTPRDMAE 278

Query: 214 ENIGAPWLGKA------TVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGL 267
           E  G     K       ++D + +++     +  I+             +F LP  +  L
Sbjct: 279 ELRGLVPFQKGLEEAGWSIDGV-KMEGKLGPRNTIL------------AIFLLPIAVLWL 325

Query: 268 IGFIFQAQIAYMA---KLALFISLY--IVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
           I   F+    Y+     +A F+ +   +V+ ++G +   +++        YFA+     +
Sbjct: 326 IFSTFKWLPVYVGVPFAIAEFMGMQYTVVLVLLGHIKAQDKVST----SNYFASIITASL 381

Query: 323 TWLFWITPVVNFFVSLLFFSTSGVLWYN------FIKC----WKG---DPG-VITAPQDE 368
            W+ +       ++S    +T G  + N      F+ C    W     DPG V    QD 
Sbjct: 382 IWVGYC------WISRFAVNTPGYAFSNLGFIIMFVGCCWTFWTAIVTDPGFVPKGQQDA 435

Query: 369 KFRYIIE-LAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKN 427
           + + ++E L + G     +FC  C+ RKP+RSKHC  CNRCVA+FDHHCPW+ NC+GAKN
Sbjct: 436 EIKEVLEDLVDAGRLNGTNFCIVCMARKPLRSKHCRTCNRCVARFDHHCPWIWNCVGAKN 495

Query: 428 HKYFVGYISSLL-FMCCFVLYGIAKYWKSKCQFQLSHEREVMF--VVWDMLQCDGWVGFI 484
           H+ F+ ++  L+  +  F+   IA   ++  ++  +    +    +   + Q   +  F+
Sbjct: 496 HRSFLLFVLFLIGGIILFIRLTIAYIQQNAPEYIPTPNPGLTTCDISTTLCQAGDFDPFL 555

Query: 485 LLNAF---VHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFI 534
           L  A    +   W +VL    L+Q +S  MTT E  N  RY  F+    GQ +
Sbjct: 556 LCMALWSTLQLTWTSVLAISHLWQ-VSRQMTTFEVSNLGRY-GFMGGRGGQSL 606

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS67|AKR1_CRYNB Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=AKR1 PE=3 SV=1

 Score =  222 bits (566), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 167/533 (31%), Positives = 259/533 (48%), Gaps = 59/533 (11%)

Query: 34  DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
           D++ VT LHWAAIN  +   +  I  GA +DAIGG+L+ATPL WA R GHL  V LLI  
Sbjct: 101 DAQDVTPLHWAAINAHMGTCRLLIDSGADIDAIGGELKATPLQWAARNGHLYVVHLLISR 160

Query: 94  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
           GADP + DS+G   +H          + Y++ + + ++ +D +G TALMW+AY+  +L  
Sbjct: 161 GADPNIHDSQGFNTLHLITHSSAVMPLLYMLHQPVAIDEKDTDGHTALMWAAYQGDALS- 219

Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
             LLI  GAS    D   G   LHWA    N V+I  LV   +SL+     G TP  + E
Sbjct: 220 VDLLIRHGASVNSTDNA-GMTPLHWAAVKGNKVSIMHLVEAGASLDAKEEAGKTPRDMAE 278

Query: 214 ENIGAPWLGKA------TVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFGL 267
           E  G     K       ++D + +++     +  I+             +F LP  +  L
Sbjct: 279 ELRGLVPFQKGLEEAGWSIDGV-KMEGKLGPRNTIL------------AIFLLPIAVLWL 325

Query: 268 IGFIFQAQIAYMA---KLALFISLY--IVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
           I   F+    Y+     +A F+ +   +V+ ++G +   +++        YFA+     +
Sbjct: 326 IFSTFKWLPVYVGVPFAIAEFMGMQYTVVLVLLGHIKAQDKVST----SNYFASIITASL 381

Query: 323 TWLFWITPVVNFFVSLLFFSTSGVLWYN------FIKC----WKG---DPG-VITAPQDE 368
            W+ +       ++S    +T G  + N      F+ C    W     DPG V    QD 
Sbjct: 382 IWVGYC------WISRFAVNTPGYAFSNLGFIIMFVGCCWTFWTAIVTDPGFVPKGQQDA 435

Query: 369 KFRYIIE-LAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKN 427
           + + ++E L + G     +FC  C+ RKP+RSKHC  CNRCVA+FDHHCPW+ NC+GAKN
Sbjct: 436 EIKEVLEDLVDAGRLNGTNFCIVCMARKPLRSKHCRTCNRCVARFDHHCPWIWNCVGAKN 495

Query: 428 HKYFVGYISSLL-FMCCFVLYGIAKYWKSKCQFQLSHEREVMF--VVWDMLQCDGWVGFI 484
           H+ F+ ++  L+  +  F+   IA   ++  ++  +    +    +   + Q   +  F+
Sbjct: 496 HRSFLLFVLFLIGGIILFIRLTIAYIQQNAPEYIPTPNPGLTTCDISTTLCQAGDFDPFL 555

Query: 485 LLNAF---VHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFI 534
           L  A    +   W +VL    L+Q +S  MTT E  N  RY  F+    GQ +
Sbjct: 556 LCMALWSTLQLTWTSVLAISHLWQ-VSRQMTTFEVSNLGRY-GFMGGRGGQSL 606

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
242021104	635	zinc finger protein DHHC domain containi	0.936	0.861	0.561	0.0
118793277	621	AGAP011732-PA [Anopheles gambiae str. PE	0.950	0.893	0.526	1e-178
380020050	609	PREDICTED: LOW QUALITY PROTEIN: palmitoy	0.945	0.906	0.531	1e-175
383855830	609	PREDICTED: palmitoyltransferase ZDHHC17-	0.919	0.881	0.543	1e-175
328791445	609	PREDICTED: palmitoyltransferase ZDHHC17	0.919	0.881	0.545	1e-175
442632645	655	Huntingtin-interacting protein 14, isofo	0.931	0.830	0.528	1e-174
21357959	637	Huntingtin-interacting protein 14, isofo	0.931	0.854	0.528	1e-174
195590611	637	GD14587 [Drosophila simulans] gi|1941970	0.931	0.854	0.528	1e-174
340714959	609	PREDICTED: LOW QUALITY PROTEIN: palmitoy	0.919	0.881	0.545	1e-174
195477856	637	GE22881 [Drosophila yakuba] gi|194186207	0.931	0.854	0.526	1e-173

>gi|242021104|ref|XP_002430986.1| zinc finger protein DHHC domain containing protein, putative [Pediculus humanus corporis] gi|212516210|gb|EEB18248.1| zinc finger protein DHHC domain containing protein, putative [Pediculus humanus corporis]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/552 (56%), Positives = 388/552 (70%), Gaps = 5/552 (0%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + +EAG DVN+PDSETVTLLHWAAINNR E++KYF+  GA+VDAIGG LQ+TPLHWAT
Sbjct: 68  VKELIEAGYDVNQPDSETVTLLHWAAINNRKELIKYFVELGAVVDAIGGVLQSTPLHWAT 127

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQG+L SV LL++ GADP+L D EG +C+H AAQFGHT IVAYLVAKG++ NLQD+ GMT
Sbjct: 128 RQGYLQSVTLLMKFGADPSLKDGEGCSCLHLAAQFGHTAIVAYLVAKGLSPNLQDKYGMT 187

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            LMWS+YKV SLDPTRLL+T GA +  QDK +GN ALHWAI AKNHVA+  LV   + L 
Sbjct: 188 PLMWSSYKVSSLDPTRLLLTLGACSGAQDKFYGNTALHWAIKAKNHVAVNILVMSGADLH 247

Query: 200 IPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFA 259
           IPN QG TPF ++ ++    W+GK  ++KI E      + +  + R  + K  R   M A
Sbjct: 248 IPNNQGFTPFSMISKDKTPNWVGKKVLEKIQE---DVPSSEFFLKRLIRDKRLRYWCMLA 304

Query: 260 LPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFW 319
            PF+ F ++G + Q+   Y+ KL L +  YI +   G V FD+RL  +LP+ +Y ATKFW
Sbjct: 305 TPFIGFYIVGLVMQSNQDYLVKLGLILVFYIFIYFAGKVFFDDRLTTVLPMSLYLATKFW 364

Query: 320 IYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
           +YITW  +I P  +  +S++F S S +LW+ FIK WKGDPGVIT  Q+EKFR IIELAE 
Sbjct: 365 MYITWCLYIAPKCSILLSVIFISFSLLLWFYFIKSWKGDPGVITYTQEEKFRTIIELAEN 424

Query: 380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
             FE   FCSTCLVR+PIRSKHC++CNRCVAKFDHHCPWVGNCIGAKNHKYF+GY+  LL
Sbjct: 425 DGFERQWFCSTCLVRRPIRSKHCAMCNRCVAKFDHHCPWVGNCIGAKNHKYFIGYLCMLL 484

Query: 440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
            MC  V++G   YW + C+     E      V D L C+GWV ++ +NA +H++W+  LL
Sbjct: 485 VMCVLVIHGATVYWNAVCKITPISE-SFWTAVGDCLSCEGWVSWVAVNALLHSVWVASLL 543

Query: 500 SCQLYQIISLGMTTNERMNANRYHHF-IANPQGQFISPFHRGRLQNFVDFTGWSCFGLFK 558
            CQ+YQI  LGMTTNERMN  RY HF   N      SPF  G  QN +D  G  CFGLF 
Sbjct: 544 CCQMYQISCLGMTTNERMNVGRYKHFHTVNDVKSTKSPFDHGPCQNIIDLLGIRCFGLFN 603

Query: 559 PERIDWMKRYEV 570
           P+  DWM +Y++
Sbjct: 604 PDYTDWMTQYQL 615

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118793277|ref|XP_320777.3| AGAP011732-PA [Anopheles gambiae str. PEST] gi|116117300|gb|EAA00049.3| AGAP011732-PA [Anopheles gambiae str. PEST]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/576 (52%), Positives = 402/576 (69%), Gaps = 21/576 (3%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + +EAG DVN+PDSETVTLLHWAAINNR +I+KYF+ +GAIVDA+GG+L ATPLHWAT
Sbjct: 56  VKELIEAGWDVNQPDSETVTLLHWAAINNRKDIIKYFLDKGAIVDAVGGELNATPLHWAT 115

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VVLL+  GADP+L D+EG +CIH AAQFGHT +VAY +A+G+N +LQDR GMT
Sbjct: 116 RQGHLGAVVLLLAAGADPSLRDAEGCSCIHLAAQFGHTALVAYFIARGVNPDLQDRGGMT 175

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSL 198
           ALMW+A+K+ +LDP RLL+T GA+ ++ D  HGN ALHWAI A+N  AI+TLV    +++
Sbjct: 176 ALMWAAWKISALDPVRLLLTLGANPSLADHTHGNTALHWAILARNATAISTLVLKGKANM 235

Query: 199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMF 258
           E+PN +G TP  +L+ ++G+ W+G    D+I E     + ++N + R +  K  R   M 
Sbjct: 236 EVPNLRGDTPLTMLQPHLGSIWIGTKVSDRIREATQQSH-RRNPLVRMTLDKRFRWWSMI 294

Query: 259 ALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKF 318
           A PF++F L+G +F A    + K+ L   LY V   IG  +FDE L  +LPL VY ATK 
Sbjct: 295 ATPFLVFYLVGLVFCADTQIIIKIFLLACLYSVAYTIGQHLFDENLMALLPLSVYMATKL 354

Query: 319 WIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAE 378
           W Y+TWL +I P V+F  SL F + S  LW  F+K W+G+PGVI   Q+++FR IIEL+E
Sbjct: 355 WFYVTWLTYIAPTVSFLASLAFLACSAGLWVCFLKSWRGNPGVIQPTQEQRFRTIIELSE 414

Query: 379 RGT--FEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYIS 436
           RG   FEP +FCS CLVR+P+RSKHCS+C+RCVA+FDHHCPWVGNCIGAKNHKYF+G++ 
Sbjct: 415 RGASGFEPSAFCSACLVRRPVRSKHCSVCDRCVARFDHHCPWVGNCIGAKNHKYFMGFLW 474

Query: 437 SLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQ----CDGWVGFILLNAFVHA 492
            LL MC ++LYG + ++   C   +         +W  LQ    C+ WVG+++ NA +H 
Sbjct: 475 MLLIMCGWMLYGGSNFYVQTCSINMDEG------LWSALQAIGSCNPWVGWVMGNALLHM 528

Query: 493 IWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWS 552
            W+TVL  CQ YQ++ LGMTTNER+N  RY HF A       SPF+RG ++N  DF   S
Sbjct: 529 SWVTVLTICQSYQVVCLGMTTNERLNRGRYRHFQAKGGK---SPFNRGPVKNLFDFLECS 585

Query: 553 CFGLFKPERIDWMKRYE----VYTEPTSLSDKYQFV 584
           CFGL +P+R DWM+ +E    V  EP    D +Q+V
Sbjct: 586 CFGLVQPQRTDWMQFFEFDKHVEHEPLLRPDNFQYV 621

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020050|ref|XP_003693911.1| PREDICTED: LOW QUALITY PROTEIN: palmitoyltransferase ZDHHC17-like [Apis florea]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 303/570 (53%), Positives = 392/570 (68%), Gaps = 18/570 (3%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VEAG DVN+PDSETVTLLHWAAINNR +I+KY I++GAIVDAIGG+L +TPLHWAT
Sbjct: 53  VTELVEAGADVNQPDSETVTLLHWAAINNRKDIVKYLIAKGAIVDAIGGELASTPLHWAT 112

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VV+L++ GADPTL DSEG +CIH AAQFGHT IVAYLVAKG+N N+ DR+ MT
Sbjct: 113 RQGHLSTVVILMRAGADPTLRDSEGFSCIHLAAQFGHTSIVAYLVAKGVNPNMPDRSAMT 172

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            LMWSAYKV SLDPTRLL+T GAS ++ D +HGN ALHWAI A+N  AI+TLV H +SL+
Sbjct: 173 PLMWSAYKVNSLDPTRLLLTLGASHSLADNLHGNTALHWAIIAENSTAISTLVHHGASLD 232

Query: 200 IPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFA 259
           +PN +  TP  LL  +IGA WLG     +I E       +Q     + + K  R   M +
Sbjct: 233 VPNIRDETPMTLLGRHIGAAWLGHKLSQEIRE-------KQGRTRTWCRDKRMRWYCMVS 285

Query: 260 LPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFW 319
            PF++F +IG IFQ+ + Y+ KL  F++L+I + +    +FDERLF I+P+ +Y ATK W
Sbjct: 286 TPFIVFYVIGMIFQSGLHYLVKLGAFVTLHIALYLANHFIFDERLFHIIPMSIYLATKMW 345

Query: 320 IYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
           IY+TW+FW+     +++ LL  S S  LW  F++ W+GDPGVITA  ++K   IIELAE 
Sbjct: 346 IYVTWIFWLGIHAAWYLWLLLVSGSVPLWICFLQSWRGDPGVITATHEDKLNTIIELAES 405

Query: 380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
           G FEP SFCS+CLVR+P+RSKHCS C+RCVA+FDHHCPW+ NCIGA NHKYF+G+++SLL
Sbjct: 406 GGFEPQSFCSSCLVRRPMRSKHCSTCDRCVARFDHHCPWINNCIGAHNHKYFLGFLASLL 465

Query: 440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
            +C  VL    +YW+ +C   L++       +     CD WV ++  N  +H  W+  LL
Sbjct: 466 GLCIVVLSASVQYWQFECWTNLTNGHSADNYLVAAATCDAWVMWVAANTCLHFFWVGTLL 525

Query: 500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
           +CQ YQI+ LGMTTNERMNA RY HF    QG   +PFHRG LQN  DF   S  G+   
Sbjct: 526 ACQCYQIMVLGMTTNERMNAGRYAHF---KQG---NPFHRGALQNAADFCNLSFCGVKAK 579

Query: 560 ERIDWMKRYEVYTEPTSL-----SDKYQFV 584
              DW+  ++       L      D +Q++
Sbjct: 580 PSSDWLHSFDXQQSIEKLPLLATKDNFQYI 609

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855830|ref|XP_003703413.1| PREDICTED: palmitoyltransferase ZDHHC17-like [Megachile rotundata]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 299/550 (54%), Positives = 386/550 (70%), Gaps = 13/550 (2%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VEAG DVN+PDSETVTLLHWAAINNR +I+KY I++GA+VDAIGG+L +TPLHWAT
Sbjct: 53  VTELVEAGADVNQPDSETVTLLHWAAINNRKDIVKYLIAKGAVVDAIGGELASTPLHWAT 112

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VV+L++ GADPTL DSEG +CIH AAQFGHT IVAYLVAKG+N N+ DR+ MT
Sbjct: 113 RQGHLSTVVILMRAGADPTLRDSEGFSCIHLAAQFGHTSIVAYLVAKGVNPNMPDRSAMT 172

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            LMWSAYKV SLDPTRLL+T GAS ++ D +HGN ALHWAI A+N  AI+TLV H +SL+
Sbjct: 173 PLMWSAYKVNSLDPTRLLLTLGASHSLADNLHGNTALHWAIIAENSTAISTLVHHGASLD 232

Query: 200 IPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFA 259
           +PN +  TP  LL  +IGA WLG     +I E       +Q     + + K  R   M +
Sbjct: 233 VPNIRDETPMTLLGRHIGAAWLGHKISQEIRE-------RQGRTRTWCRDKRIRWYCMVS 285

Query: 260 LPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFW 319
            PF++F +IG IFQ+ + Y+ KL  F++LYI + +    +FDERLF I+P+ +Y ATK W
Sbjct: 286 TPFIVFYVIGMIFQSGLDYLVKLGAFVTLYIALYLANHFVFDERLFHIIPMSIYLATKMW 345

Query: 320 IYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
           IY+TW+FW+     +++ LL    S  LW  F++ W+GDPGVITA  ++K   IIELAE 
Sbjct: 346 IYVTWIFWLGVHAAWYLWLLLVGGSVPLWVCFLQSWRGDPGVITATHEDKLNTIIELAES 405

Query: 380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
           G FEP SFCS+CLVR+P+RSKHCS C+RCVA+FDHHCPWV NCIGA NHKYF+G+++SLL
Sbjct: 406 GGFEPQSFCSSCLVRRPMRSKHCSTCDRCVARFDHHCPWVNNCIGAHNHKYFLGFLASLL 465

Query: 440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
            +C  VL    +YW+ +C   L++       +     CD WV ++  N  +H  W+  LL
Sbjct: 466 GLCIVVLSASVQYWQFECWTNLTNGHSADNYLVAAATCDAWVMWVTANTSLHFFWVGTLL 525

Query: 500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
           +CQ YQI+ LGMTTNERMNA RY HF    QG   +PFHRG +QN  DF   S  G+   
Sbjct: 526 ACQCYQIMVLGMTTNERMNAGRYSHF---KQG---NPFHRGAIQNAADFCNISFCGIKAK 579

Query: 560 ERIDWMKRYE 569
              DW++ ++
Sbjct: 580 PSSDWLQSFD 589

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791445|ref|XP_394622.2| PREDICTED: palmitoyltransferase ZDHHC17 isoform 1 [Apis mellifera]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/550 (54%), Positives = 386/550 (70%), Gaps = 13/550 (2%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VEAG DVN+PDSETVTLLHWAAINNR +I+KY I++GAIVDAIGG+L +TPLHWAT
Sbjct: 53  VTELVEAGADVNQPDSETVTLLHWAAINNRKDIVKYLIAKGAIVDAIGGELASTPLHWAT 112

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VV+L++ GADPTL DSEG +CIH AAQFGHT IVAYLVAKG+N N+ DR+ MT
Sbjct: 113 RQGHLSTVVILMRAGADPTLRDSEGFSCIHLAAQFGHTSIVAYLVAKGVNPNMPDRSAMT 172

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            LMWSAYKV SLDPTRLL+T GAS ++ D +HGN ALHWAI A+N  AI+TLV H +SL+
Sbjct: 173 PLMWSAYKVNSLDPTRLLLTLGASHSLADNLHGNTALHWAIIAENSTAISTLVHHGASLD 232

Query: 200 IPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFA 259
           +PN +  TP  LL  +IGA WLG     +I E       +Q     + + K  R   M +
Sbjct: 233 VPNIRDETPMTLLGRHIGAAWLGHKLSQEIRE-------KQGRTRTWCRDKRMRWYCMVS 285

Query: 260 LPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFW 319
            PF++F +IG IFQ+ + Y+ KL  F++L+I + +    +FDERLF I+P+ +Y ATK W
Sbjct: 286 TPFIVFYVIGMIFQSGLHYLVKLGAFVTLHIALYLANHFIFDERLFHIIPMSIYLATKMW 345

Query: 320 IYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
           IY+TW+FW+     +++ LL  S S  LW  F++ W+GDPGVITA  ++K   IIELAE 
Sbjct: 346 IYVTWIFWLGIHAAWYLWLLLVSGSVPLWICFLQSWRGDPGVITATHEDKLNTIIELAES 405

Query: 380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
           G FEP SFCS+CLVR+P+RSKHCS C+RCVA+FDHHCPW+ NCIGA NHKYF+G+++SLL
Sbjct: 406 GGFEPQSFCSSCLVRRPMRSKHCSTCDRCVARFDHHCPWINNCIGAHNHKYFLGFLASLL 465

Query: 440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
            +C  VL    +YW+ +C   L++       +     CD WV ++  N  +H  W+  LL
Sbjct: 466 GLCIVVLSASVQYWQFECWTNLTNGHSADNYLVAAATCDAWVMWVAANTCLHFFWVGTLL 525

Query: 500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
           +CQ YQI+ LGMTTNERMNA RY HF    QG   +PFHRG LQN  DF   S  G+   
Sbjct: 526 ACQCYQIMVLGMTTNERMNAGRYAHF---KQG---NPFHRGALQNAADFCNLSFCGVKAK 579

Query: 560 ERIDWMKRYE 569
              DW+  ++
Sbjct: 580 PSSDWLHSFD 589

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442632645|ref|NP_001261910.1| Huntingtin-interacting protein 14, isoform B [Drosophila melanogaster] gi|440215856|gb|AGB94603.1| Huntingtin-interacting protein 14, isoform B [Drosophila melanogaster]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/553 (52%), Positives = 383/553 (69%), Gaps = 9/553 (1%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VE+G DVN+PDSETVTLLHWAAINNR +I++YF+ +GA VDA+GG+L ATPLHWAT
Sbjct: 61  VRELVESGWDVNQPDSETVTLLHWAAINNRRDIIRYFLEKGATVDAVGGELNATPLHWAT 120

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VVLL+  GADP + D+EG +CIH AAQF HT +VAY +AKG++ +LQDR GMT
Sbjct: 121 RQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAAQFAHTALVAYFIAKGVDPDLQDRGGMT 180

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSL 198
           ALMW+A+KV +LDP RLL+T GA+  + D  HGN ALHWAI A+N  AI+TLV    +SL
Sbjct: 181 ALMWAAWKVCALDPVRLLLTLGANPAMVDYTHGNTALHWAILARNATAISTLVLKSKASL 240

Query: 199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMF 258
           ++PN +G TP  +LE   GA W+G   +D++ E       +++++ +    K  R   M 
Sbjct: 241 DVPNLRGETPLSMLESQTGAIWIGAKVMDRVKEAALTSQQRRSLLSKLRHDKRLRWWSMV 300

Query: 259 ALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKF 318
           A PF  F L G +F     Y+ K  L   LY +   IG  +FDE L  +LPL VY ATK 
Sbjct: 301 ACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYSIFHTIGKALFDEHLMALLPLSVYLATKA 360

Query: 319 WIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAE 378
           W Y+TWL +I   V+F  ++ F  +S +LW  F+K WKGDPG+I   ++++F+ IIEL+E
Sbjct: 361 WFYVTWLMYIDDAVSFTATVCFLISSLLLWVCFLKSWKGDPGIIRPTREQRFKTIIELSE 420

Query: 379 RG--TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYIS 436
           RG   FEP SFCS CLVR+PIRSKHCS+C+RCVA+FDHHCPWVGNCIG KNH YF+G++ 
Sbjct: 421 RGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCVARFDHHCPWVGNCIGLKNHSYFMGFLW 480

Query: 437 SLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWIT 496
            LL MC ++LYG +KY+ ++C  +       M  + +   CD WVG+++ NA +H  W+ 
Sbjct: 481 MLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMRAIGN---CDAWVGWVMGNALLHMSWVI 537

Query: 497 VLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGL 556
           +L  CQ YQ+I LGMTTNERMN  RY HF A       SPF RG +QN VDF   SCFGL
Sbjct: 538 LLTICQTYQVICLGMTTNERMNRGRYRHFQAKGGH---SPFTRGPIQNLVDFLECSCFGL 594

Query: 557 FKPERIDWMKRYE 569
            +P+R+DWM  Y+
Sbjct: 595 VQPKRVDWMNYYD 607

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357959|ref|NP_648824.1| Huntingtin-interacting protein 14, isoform A [Drosophila melanogaster] gi|442632647|ref|NP_001261911.1| Huntingtin-interacting protein 14, isoform C [Drosophila melanogaster] gi|7294202|gb|AAF49554.1| Huntingtin-interacting protein 14, isoform A [Drosophila melanogaster] gi|20151545|gb|AAM11132.1| LD10758p [Drosophila melanogaster] gi|220943582|gb|ACL84334.1| Hip14-PA [synthetic construct] gi|440215857|gb|AGB94604.1| Huntingtin-interacting protein 14, isoform C [Drosophila melanogaster]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/553 (52%), Positives = 383/553 (69%), Gaps = 9/553 (1%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VE+G DVN+PDSETVTLLHWAAINNR +I++YF+ +GA VDA+GG+L ATPLHWAT
Sbjct: 61  VRELVESGWDVNQPDSETVTLLHWAAINNRRDIIRYFLEKGATVDAVGGELNATPLHWAT 120

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VVLL+  GADP + D+EG +CIH AAQF HT +VAY +AKG++ +LQDR GMT
Sbjct: 121 RQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAAQFAHTALVAYFIAKGVDPDLQDRGGMT 180

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSL 198
           ALMW+A+KV +LDP RLL+T GA+  + D  HGN ALHWAI A+N  AI+TLV    +SL
Sbjct: 181 ALMWAAWKVCALDPVRLLLTLGANPAMVDYTHGNTALHWAILARNATAISTLVLKSKASL 240

Query: 199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMF 258
           ++PN +G TP  +LE   GA W+G   +D++ E       +++++ +    K  R   M 
Sbjct: 241 DVPNLRGETPLSMLESQTGAIWIGAKVMDRVKEAALTSQQRRSLLSKLRHDKRLRWWSMV 300

Query: 259 ALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKF 318
           A PF  F L G +F     Y+ K  L   LY +   IG  +FDE L  +LPL VY ATK 
Sbjct: 301 ACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYSIFHTIGKALFDEHLMALLPLSVYLATKA 360

Query: 319 WIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAE 378
           W Y+TWL +I   V+F  ++ F  +S +LW  F+K WKGDPG+I   ++++F+ IIEL+E
Sbjct: 361 WFYVTWLMYIDDAVSFTATVCFLISSLLLWVCFLKSWKGDPGIIRPTREQRFKTIIELSE 420

Query: 379 RG--TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYIS 436
           RG   FEP SFCS CLVR+PIRSKHCS+C+RCVA+FDHHCPWVGNCIG KNH YF+G++ 
Sbjct: 421 RGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCVARFDHHCPWVGNCIGLKNHSYFMGFLW 480

Query: 437 SLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWIT 496
            LL MC ++LYG +KY+ ++C  +       M  + +   CD WVG+++ NA +H  W+ 
Sbjct: 481 MLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMRAIGN---CDAWVGWVMGNALLHMSWVI 537

Query: 497 VLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGL 556
           +L  CQ YQ+I LGMTTNERMN  RY HF A       SPF RG +QN VDF   SCFGL
Sbjct: 538 LLTICQTYQVICLGMTTNERMNRGRYRHFQAKGGH---SPFTRGPIQNLVDFLECSCFGL 594

Query: 557 FKPERIDWMKRYE 569
            +P+R+DWM  Y+
Sbjct: 595 VQPKRVDWMNYYD 607

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195590611|ref|XP_002085038.1| GD14587 [Drosophila simulans] gi|194197047|gb|EDX10623.1| GD14587 [Drosophila simulans]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/553 (52%), Positives = 383/553 (69%), Gaps = 9/553 (1%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VE+G DVN+PDSETVTLLHWAAINNR +I++YF+ +GA VDA+GG+L ATPLHWAT
Sbjct: 61  VRELVESGWDVNQPDSETVTLLHWAAINNRRDIIRYFLEKGATVDAVGGELNATPLHWAT 120

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VVLL+  GADP + D+EG +CIH AAQF HT +VAY +AKG++ +LQDR GMT
Sbjct: 121 RQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAAQFAHTALVAYFIAKGVDPDLQDRGGMT 180

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSL 198
           ALMW+A+KV +LDP RLL+T GA+  + D  HGN ALHWAI A+N  AI+TLV    +SL
Sbjct: 181 ALMWAAWKVCALDPVRLLLTLGANPAMVDYTHGNTALHWAILARNATAISTLVLKSKASL 240

Query: 199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMF 258
           ++PN +G TP  +LE   GA W+G   +D++ E       +++++ +    K  R   M 
Sbjct: 241 DVPNLRGETPLSMLESQTGAIWIGAKVMDRVKEAALTSQQRRSLLSKLRHDKRLRWWSMV 300

Query: 259 ALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKF 318
           A PF  F L G +F     Y+ K  L   LY +   IG  +FDE L  +LPL VY ATK 
Sbjct: 301 ACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYAIFHTIGKALFDEHLMALLPLSVYLATKA 360

Query: 319 WIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAE 378
           W Y+TWL +I   V+F  ++ F  +S +LW  F+K WKGDPG+I   ++++F+ IIEL+E
Sbjct: 361 WFYVTWLMYIDDAVSFTATVCFLISSLLLWVCFLKSWKGDPGIIRPTREQRFKTIIELSE 420

Query: 379 RG--TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYIS 436
           RG   FEP SFCS CLVR+PIRSKHCS+C+RCVA+FDHHCPWVGNCIG KNH YF+G++ 
Sbjct: 421 RGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCVARFDHHCPWVGNCIGLKNHSYFMGFLW 480

Query: 437 SLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWIT 496
            LL MC ++LYG +KY+ ++C  +       M  + +   CD WVG+++ NA +H  W+ 
Sbjct: 481 MLLIMCAWMLYGGSKYYVNQCNVRFDDFIGAMRAIGN---CDAWVGWVMGNALLHMSWVI 537

Query: 497 VLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGL 556
           +L  CQ YQ+I LGMTTNERMN  RY HF A       SPF RG +QN VDF   SCFGL
Sbjct: 538 LLTICQTYQVICLGMTTNERMNRGRYRHFQAKGGH---SPFTRGPIQNLVDFLECSCFGL 594

Query: 557 FKPERIDWMKRYE 569
            +P+R+DWM  Y+
Sbjct: 595 VQPKRVDWMNYYD 607

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714959|ref|XP_003395989.1| PREDICTED: LOW QUALITY PROTEIN: palmitoyltransferase ZDHHC17-like [Bombus terrestris] gi|350398520|ref|XP_003485219.1| PREDICTED: palmitoyltransferase ZDHHC17-like [Bombus impatiens]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/550 (54%), Positives = 383/550 (69%), Gaps = 13/550 (2%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VEAG DVN+PDSETVTLLHWAAINNR +I+KY I++GA+VDAIGG+L +TPLHWAT
Sbjct: 53  VTELVEAGADVNQPDSETVTLLHWAAINNRKDIVKYLIAKGAVVDAIGGELASTPLHWAT 112

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VV+L++ GADPTL DSEG +CIH AAQFGHT IVAYLVAKG+N N+ DR+ MT
Sbjct: 113 RQGHLSTVVILMRAGADPTLRDSEGFSCIHLAAQFGHTSIVAYLVAKGVNPNMPDRSAMT 172

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            LMWSAYKV SLDPTRLL+T GAS  + D +HGN ALHWAI A+N  AI+TLV H +SL+
Sbjct: 173 PLMWSAYKVNSLDPTRLLLTLGASHLLADNLHGNTALHWAIIAENSTAISTLVHHGASLD 232

Query: 200 IPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFA 259
            PN    TP  LL+ +IGA WLG     +I E       +Q     + + K  R   M +
Sbjct: 233 RPNVLYETPMTLLDRHIGAAWLGHKISQEIRE-------KQGRTRIWCRDKRIRWYCMVS 285

Query: 260 LPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFW 319
            PF++F LIG IFQ+ + Y+ K+  FI+LYI + +    +FDERLF I+P+ +Y ATK W
Sbjct: 286 TPFIVFYLIGMIFQSGLDYLIKIGAFITLYIALYLANHFIFDERLFHIIPMSIYLATKMW 345

Query: 320 IYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
           IYITW+FW+     +++ LL    S  LW  F++ W+GDPGVITA  ++K   IIELAE 
Sbjct: 346 IYITWIFWLGIHAAWYLWLLLVGGSVPLWICFLQSWRGDPGVITATHEDKLNTIIELAES 405

Query: 380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
           G FEP SFCS+CL+R+P+RSKHCS C+RCVA+FDHHCPW+ NCIGA NHKYF+G+++SLL
Sbjct: 406 GGFEPQSFCSSCLIRRPMRSKHCSTCDRCVARFDHHCPWINNCIGAHNHKYFLGFLASLL 465

Query: 440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
            +C  +L   A+YW+ +C   L+        +     CD WV ++  N  +H  W+  LL
Sbjct: 466 GLCIVILSASAQYWQFECWTNLTKGHTADNYLVTTATCDAWVMWVAANTALHFFWVGTLL 525

Query: 500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
           +CQ YQI+ LGMTTNERMNA RY HF    QG   +PFHRG LQN  DF   S  G+   
Sbjct: 526 ACQCYQIMVLGMTTNERMNAGRYAHF---KQG---NPFHRGALQNAADFCNLSFCGVKAK 579

Query: 560 ERIDWMKRYE 569
              DW+  ++
Sbjct: 580 PSSDWLHSFD 589

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477856|ref|XP_002086417.1| GE22881 [Drosophila yakuba] gi|194186207|gb|EDW99818.1| GE22881 [Drosophila yakuba]

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 291/553 (52%), Positives = 382/553 (69%), Gaps = 9/553 (1%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + VE+G DVN+PDSETVTLLHWAAINNR +I++YF+ +GA VDA+GG+L ATPLHWAT
Sbjct: 61  VRELVESGWDVNQPDSETVTLLHWAAINNRRDIIRYFLEKGATVDAVGGELNATPLHWAT 120

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           RQGHL +VVLL+  GADP + D+EG +CIH AAQF HT +VAY +AKG++ +LQDR GMT
Sbjct: 121 RQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAAQFAHTALVAYFIAKGVDPDLQDRGGMT 180

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSL 198
           ALMW+A+KV +LDP RLL+T GA+  + D  HGN ALHWAI A+N  AI+TLV    +SL
Sbjct: 181 ALMWAAWKVCALDPVRLLLTLGANPAMVDYTHGNTALHWAILARNATAISTLVLKSKASL 240

Query: 199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMF 258
           ++PN +G TP  +LE   GA W+G   +D++ E       +++++ +    K  R   M 
Sbjct: 241 DVPNLRGETPLSMLESQTGAIWIGAKVMDRVKEAALTSQQRRSLLSKLRHDKRLRWWSMV 300

Query: 259 ALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKF 318
           A PF  F L G +F     Y+ K  L   LY +   IG  +FDE L  +LPL VY ATK 
Sbjct: 301 ACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYAIFHTIGKALFDEHLMALLPLSVYLATKA 360

Query: 319 WIYITWLFWITPVVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAE 378
           W Y+TWL +I   V+   ++ F  +S +LW  F+K WKGDPG+I   ++++F+ IIEL+E
Sbjct: 361 WFYVTWLMYIDDAVSLTATVCFLISSLLLWVCFLKSWKGDPGIIRPTREQRFKTIIELSE 420

Query: 379 RG--TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYIS 436
           RG   FEP SFCS CLVR+PIRSKHCS+C+RCVA+FDHHCPWVGNCIG KNH YF+G++ 
Sbjct: 421 RGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCVARFDHHCPWVGNCIGLKNHSYFMGFLW 480

Query: 437 SLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWIT 496
            LL MC ++LYG +KY+ ++C  +       M  + +   CD WVG+++ NA +H  W+ 
Sbjct: 481 MLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMRAIGN---CDAWVGWVMGNAMLHMSWVI 537

Query: 497 VLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGL 556
           +L  CQ YQ+I LGMTTNERMN  RY HF A       SPF RG +QN VDF   SCFGL
Sbjct: 538 LLTICQTYQVICLGMTTNERMNRGRYRHFQAKGGH---SPFTRGPIQNLVDFLECSCFGL 594

Query: 557 FKPERIDWMKRYE 569
            +P+R+DWM  Y+
Sbjct: 595 VQPKRVDWMNYYD 607

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
FB|FBgn0259824	637	Hip14 "Huntingtin-interacting	0.931	0.854	0.520	7.5e-160
UNIPROTKB|F1N9E7	601	ZDHHC17 "Uncharacterized prote	0.945	0.918	0.461	5.7e-146
ZFIN|ZDB-GENE-070424-194	620	zdhhc17 "zinc finger, DHHC-typ	0.943	0.888	0.462	1.9e-145
MGI|MGI:2445110	632	Zdhhc17 "zinc finger, DHHC dom	0.948	0.876	0.461	5.1e-145
UNIPROTKB|E9PTT0	622	Zdhhc17 "Protein Zdhhc17" [Rat	0.948	0.890	0.460	6.6e-145
UNIPROTKB|Q8IUH5	632	ZDHHC17 "Palmitoyltransferase	0.948	0.876	0.460	1.7e-144
UNIPROTKB|E1BJK1	634	ZDHHC17 "Uncharacterized prote	0.948	0.873	0.458	4.6e-144
UNIPROTKB|F1PRB8	604	ZDHHC17 "Uncharacterized prote	0.948	0.917	0.458	5.9e-144
RGD|1595790	622	Zdhhc17 "zinc finger, DHHC-typ	0.948	0.890	0.458	5.9e-144
UNIPROTKB|J9P6L2	494	ZDHHC17 "Uncharacterized prote	0.840	0.993	0.424	2.1e-116

FB|FBgn0259824 Hip14 "Huntingtin-interacting protein 14" [Drosophila melanogaster (taxid:7227)]

 Score = 1557 (553.2 bits), Expect = 7.5e-160, P = 7.5e-160
 Identities = 288/553 (52%), Positives = 375/553 (67%)

Query:    20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
             V + VE+G DVN+PDSETVTLLHWAAINNR +I++YF+ +GA VDA+GG+L ATPLHWAT
Sbjct:    61 VRELVESGWDVNQPDSETVTLLHWAAINNRRDIIRYFLEKGATVDAVGGELNATPLHWAT 120

Query:    80 RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
             RQGHL +VVLL+  GADP + D+EG +CIH AAQF HT +VAY +AKG++ +LQDR GMT
Sbjct:   121 RQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAAQFAHTALVAYFIAKGVDPDLQDRGGMT 180

Query:   140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT-SSL 198
             ALMW+A+KV +LDP RLL+T GA+  + D  HGN ALHWAI A+N  AI+TLV  + +SL
Sbjct:   181 ALMWAAWKVCALDPVRLLLTLGANPAMVDYTHGNTALHWAILARNATAISTLVLKSKASL 240

Query:   199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMF 258
             ++PN +G TP  +LE   GA W+G   +D++ E       +++++ +    K  R   M 
Sbjct:   241 DVPNLRGETPLSMLESQTGAIWIGAKVMDRVKEAALTSQQRRSLLSKLRHDKRLRWWSMV 300

Query:   259 ALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKF 318
             A PF  F L G +F     Y+ K  L   LY +   IG  +FDE L  +LPL VY ATK 
Sbjct:   301 ACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYSIFHTIGKALFDEHLMALLPLSVYLATKA 360

Query:   319 WIYITWLFWITPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAE 378
             W Y+TWL +I                   W  F+K WKGDPG+I   ++++F+ IIEL+E
Sbjct:   361 WFYVTWLMYIDDAVSFTATVCFLISSLLLWVCFLKSWKGDPGIIRPTREQRFKTIIELSE 420

Query:   379 RGT--FEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYIS 436
             RG   FEP SFCS CLVR+PIRSKHCS+C+RCVA+FDHHCPWVGNCIG KNH YF+G++ 
Sbjct:   421 RGGIGFEPASFCSGCLVRRPIRSKHCSVCDRCVARFDHHCPWVGNCIGLKNHSYFMGFLW 480

Query:   437 SLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWIT 496
              LL MC ++LYG +KY+ ++C  +       M  + +   CD WVG+++ NA +H  W+ 
Sbjct:   481 MLLIMCAWMLYGGSKYYVNQCNVRFDDFLGAMRAIGN---CDAWVGWVMGNALLHMSWVI 537

Query:   497 VLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGL 556
             +L  CQ YQ+I LGMTTNERMN  RY HF A   G   SPF RG +QN VDF   SCFGL
Sbjct:   538 LLTICQTYQVICLGMTTNERMNRGRYRHFQAKG-GH--SPFTRGPIQNLVDFLECSCFGL 594

Query:   557 FKPERIDWMKRYE 569
              +P+R+DWM  Y+
Sbjct:   595 VQPKRVDWMNYYD 607

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0018345 "protein palmitoylation" evidence=ISS

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

UNIPROTKB|F1N9E7 ZDHHC17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
 Identities = 261/565 (46%), Positives = 369/565 (65%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    46 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 105

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   106 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 165

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N 
Sbjct:   166 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 225

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDH--YNTQQNIIHRFSKSKTTRARYMFALP 261
             +G +P  L ++     W+    ++ + E +    Y++  + + +    K  R + M   P
Sbjct:   226 KGESPLDLAKQRKNV-WM----INHLQEARQAKGYDSP-SFLRKLKADKEFRQKVMLGTP 279

Query:   262 FVMFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWI 320
             F++  L+GFI    I +++ K  ++  ++ ++Q +    FD  +   LPL +Y ATKFW+
Sbjct:   280 FLVIWLVGFIADLDIDSWLIKGLMYGGVWAMVQFLSKSFFDHSMHSALPLGIYLATKFWM 339

Query:   321 YITWLFWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
             Y+TW FW                     +YNF K WK DPG+I A +++K + I+ELAE 
Sbjct:   340 YVTWFFWFWNDILFCVHHLPFLANSIALFYNFGKSWKSDPGIIKATEEQKKKTIVELAET 399

Query:   380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
             G+ +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LL
Sbjct:   400 GSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLL 459

Query:   440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
             FM C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL
Sbjct:   460 FMICWMIYGCISYWGFHCETSYAKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLL 518

Query:   500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
              CQ+YQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P
Sbjct:   519 MCQMYQISCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCIRNIIDFFEFRCCGLFRP 577

Query:   560 ERIDWMKRYEVYTEPTSLSDKYQFV 584
               +DW ++Y +  + TS S  YQ V
Sbjct:   578 VIVDWTRQYTIEYDQTSGSG-YQLV 601

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

ZFIN|ZDB-GENE-070424-194 zdhhc17 "zinc finger, DHHC-type containing 17" [Danio rerio (taxid:7955)]

 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 262/566 (46%), Positives = 370/566 (65%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNR++++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    65 VEAGYDVRQPDKENVTLLHWAAINNRVDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 124

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +C+H AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   125 LSMVVQLMKYGADPSLIDGEGCSCVHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 184

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N 
Sbjct:   185 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEANANVDAQNI 244

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDH--YNTQQNIIHRFSKSKTTRARYMFALP 261
             +G TP  L ++     W+    ++ + E +    Y++  + + R    K  R + M   P
Sbjct:   245 KGETPLDLAKQRKNV-WM----INHLQEARQAKGYDSP-SYLKRLKMDKEFRQKVMLGTP 298

Query:   262 FVMFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWI 320
             F++  L+GFI    I +++ K  ++  +++V+Q +    FD  +   LPL +Y ATKFW+
Sbjct:   299 FLVIWLVGFIADLDIDSWLIKGVMYAVMWLVVQFLSKSFFDHSMHSALPLGIYLATKFWM 358

Query:   321 YITWLFWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
             YITW +W                     +YNF K WK DPG+I A +++K + I+ELAE 
Sbjct:   359 YITWFYWFWNDLPFVTIHLPFLLNSLALFYNFGKSWKSDPGIIKASEEQKKKTIVELAET 418

Query:   380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
             G+ +   FCSTCL+RKPIRSKHC++CNRC+AKFDHHCPWVGNC+G+ NH+YF+GY+  LL
Sbjct:   419 GSLDLSIFCSTCLIRKPIRSKHCAVCNRCIAKFDHHCPWVGNCVGSGNHRYFMGYLFFLL 478

Query:   440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFV-VWDMLQCDGWVGFILLNAFVHAIWITVL 498
              M C+++YG   YW+  C    S+ ++  ++ +  +  C  W+ ++ LN+  H +W+ VL
Sbjct:   479 CMICWMMYGCICYWRIHCA--TSYTKDGFWIYITQIATCSPWMFWMFLNSVFHFMWVAVL 536

Query:   499 LSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFK 558
             + CQLYQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF    C GL +
Sbjct:   537 IMCQLYQIAVLGITTNERMNARRYKHFKVTATS-IESPFNHGCMRNLIDFFELRCCGLLR 595

Query:   559 PERIDWMKRYEVYTEPTSLSDKYQFV 584
             P  IDW  +Y +  + TS S  YQ V
Sbjct:   596 PVPIDWTSQYTIEYDQTSGSG-YQLV 620

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2445110 Zdhhc17 "zinc finger, DHHC domain containing 17" [Mus musculus (taxid:10090)]

 Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
 Identities = 260/563 (46%), Positives = 363/563 (64%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    77 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 136

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   137 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 196

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+    +++  N 
Sbjct:   197 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGGNVDAQNV 256

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFV 263
             +G +   L ++     W+    + +  + K + N   + + +    K  R + M   PF+
Sbjct:   257 KGESALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFL 312

Query:   264 MFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
             +  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+
Sbjct:   313 VIWLVGFIADLDIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYV 372

Query:   323 TWLFWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGT 381
             TW FW                     +YNF K WK DPG+I A +++K + I+ELAE G+
Sbjct:   373 TWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETGS 432

Query:   382 FEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFM 441
              +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM
Sbjct:   433 LDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFM 492

Query:   442 CCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSC 501
              C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL C
Sbjct:   493 ICWMIYGCVSYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFLWVAVLLMC 551

Query:   502 QLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPER 561
             QLYQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P  
Sbjct:   552 QLYQITCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVI 610

Query:   562 IDWMKRYEVYTEPTSLSDKYQFV 584
             +DW ++Y +  +  S S  YQ V
Sbjct:   611 VDWTRQYTIEYDQISGSG-YQLV 632

GO:0000139 "Golgi membrane" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IDA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E9PTT0 Zdhhc17 "Protein Zdhhc17" [Rattus norvegicus (taxid:10116)]

 Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
 Identities = 259/563 (46%), Positives = 363/563 (64%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    67 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 126

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   127 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 186

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+    +++  N 
Sbjct:   187 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGGNVDAQNV 246

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFV 263
             +G +   L ++     W+    + +  + K + N   + + +    K  R + M   PF+
Sbjct:   247 KGESALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFL 302

Query:   264 MFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
             +  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+
Sbjct:   303 VIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYV 362

Query:   323 TWLFWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGT 381
             TW FW                     +YNF K WK DPG+I A +++K + I+ELAE G+
Sbjct:   363 TWFFWFWNDLSFLSIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETGS 422

Query:   382 FEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFM 441
              +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM
Sbjct:   423 LDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFM 482

Query:   442 CCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSC 501
              C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL C
Sbjct:   483 ICWMIYGCVSYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMC 541

Query:   502 QLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPER 561
             Q+YQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P  
Sbjct:   542 QMYQITCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVI 600

Query:   562 IDWMKRYEVYTEPTSLSDKYQFV 584
             +DW ++Y +  +  S S  YQ V
Sbjct:   601 VDWTRQYTIEYDQISGSG-YQLV 622

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

UNIPROTKB|Q8IUH5 ZDHHC17 "Palmitoyltransferase ZDHHC17" [Homo sapiens (taxid:9606)]

 Score = 1412 (502.1 bits), Expect = 1.7e-144, P = 1.7e-144
 Identities = 259/563 (46%), Positives = 364/563 (64%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    77 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 136

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   137 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 196

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N 
Sbjct:   197 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 256

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFV 263
             +G +   L ++     W+    + +  + K + N   + + +    K  R + M   PF+
Sbjct:   257 KGESALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFL 312

Query:   264 MFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
             +  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+
Sbjct:   313 VIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYV 372

Query:   323 TWLFWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGT 381
             TW FW                     +YNF K WK DPG+I A +++K + I+ELAE G+
Sbjct:   373 TWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETGS 432

Query:   382 FEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFM 441
              +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM
Sbjct:   433 LDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFM 492

Query:   442 CCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSC 501
              C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL C
Sbjct:   493 ICWMIYGCISYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMC 551

Query:   502 QLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPER 561
             Q+YQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P  
Sbjct:   552 QMYQISCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVI 610

Query:   562 IDWMKRYEVYTEPTSLSDKYQFV 584
             +DW ++Y +  +  S S  YQ V
Sbjct:   611 VDWTRQYTIEYDQISGSG-YQLV 632

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IDA

GO:0042953 "lipoprotein transport" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IMP

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IMP

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007165 "signal transduction" evidence=IMP

GO:0015693 "magnesium ion transport" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BJK1 ZDHHC17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1408 (500.7 bits), Expect = 4.6e-144, P = 4.6e-144
 Identities = 259/565 (45%), Positives = 364/565 (64%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    77 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 136

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   137 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 196

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N 
Sbjct:   197 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 256

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFV 263
             +G +   L ++     W+    + +  + K + N   + + +    K  R + M   PF+
Sbjct:   257 KGESALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFL 312

Query:   264 MFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
             +  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+
Sbjct:   313 VIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYV 372

Query:   323 TWLFWITPXXXXXXXXXXX---XXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
             TW FW                       +YNF K WK DPG+I A +++K + I+ELAE 
Sbjct:   373 TWFFWFWNDAHLNFLFIHLPFLANSIALFYNFGKSWKSDPGIIKATEEQKKKTIVELAET 432

Query:   380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
             G+ +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LL
Sbjct:   433 GSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLL 492

Query:   440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
             FM C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL
Sbjct:   493 FMICWMIYGCISYWGLHCETSYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLL 551

Query:   500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
              CQ+YQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P
Sbjct:   552 MCQMYQISCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRP 610

Query:   560 ERIDWMKRYEVYTEPTSLSDKYQFV 584
               +DW ++Y +  +  S S  YQ V
Sbjct:   611 VIVDWTRQYTIEYDQISGSG-YQLV 634

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PRB8 ZDHHC17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1407 (500.3 bits), Expect = 5.9e-144, P = 5.9e-144
 Identities = 259/565 (45%), Positives = 364/565 (64%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    47 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 106

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   107 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 166

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N 
Sbjct:   167 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 226

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFV 263
             +G +   L ++     W+    + +  + K + N   + + +    K  R + M   PF+
Sbjct:   227 KGESALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFL 282

Query:   264 MFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
             +  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+
Sbjct:   283 VIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYV 342

Query:   323 TWLFWITPXXXXXXXXXXX---XXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAER 379
             TW FW                       +YNF K WK DPG+I A +++K + I+ELAE 
Sbjct:   343 TWFFWFWNDAHLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAET 402

Query:   380 GTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLL 439
             G+ +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LL
Sbjct:   403 GSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLL 462

Query:   440 FMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLL 499
             FM C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL
Sbjct:   463 FMICWMIYGCISYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLL 521

Query:   500 SCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKP 559
              CQ+YQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P
Sbjct:   522 MCQMYQISCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRP 580

Query:   560 ERIDWMKRYEVYTEPTSLSDKYQFV 584
               +DW ++Y +  +  S S  YQ V
Sbjct:   581 VIVDWTRQYTIEYDQISGSG-YQLV 604

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1595790 Zdhhc17 "zinc finger, DHHC-type containing 17" [Rattus norvegicus (taxid:10116)]

 Score = 1407 (500.3 bits), Expect = 5.9e-144, P = 5.9e-144
 Identities = 258/563 (45%), Positives = 362/563 (64%)

Query:    24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
             VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct:    67 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 126

Query:    84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct:   127 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 186

Query:   144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA 203
             +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+    +++  N 
Sbjct:   187 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGGNVDAQNV 246

Query:   204 QGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFV 263
             +G +   L ++     W+    + +  + K + N   + + +    K  R + M   PF+
Sbjct:   247 KGESALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFL 302

Query:   264 MFGLIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYI 322
             +  L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+
Sbjct:   303 VIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYV 362

Query:   323 TWLFWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGT 381
             TW FW                     +YNF K WK DPG+I A +++K + I+ELAE G+
Sbjct:   363 TWFFWFWNDLSFLSIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETGS 422

Query:   382 FEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFM 441
              +   FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+ A NH+YF+GY+  LLFM
Sbjct:   423 LDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVCAGNHRYFMGYLFFLLFM 482

Query:   442 CCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSC 501
              C+++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL C
Sbjct:   483 ICWMIYGCVSYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMC 541

Query:   502 QLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPER 561
             Q+YQI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P  
Sbjct:   542 QMYQITCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVI 600

Query:   562 IDWMKRYEVYTEPTSLSDKYQFV 584
             +DW ++Y +  +  S S  YQ V
Sbjct:   601 VDWTRQYTIEYDQISGSG-YQLV 622

GO:0000139 "Golgi membrane" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=ISO

GO:0016409 "palmitoyltransferase activity" evidence=ISO

GO:0018345 "protein palmitoylation" evidence=ISO

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|J9P6L2 ZDHHC17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 212/500 (42%), Positives = 309/500 (61%)

Query:    87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
             VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW+AY
Sbjct:     2 VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 61

Query:   147 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL 206
             +  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  N +G 
Sbjct:    62 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE 121

Query:   207 TPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTTRARYMFALPFVMFG 266
             +   L ++     W+    + +  + K + N   + + +    K  R + M   PF++  
Sbjct:   122 SALDLAKQRKNV-WMINH-LQEARQAKGYDNP--SFLRKLKADKEFRQKVMLGTPFLVIW 177

Query:   267 LIGFIFQAQI-AYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWL 325
             L+GFI    I +++ K  ++  ++  +Q +    FD  +   LPL +Y ATKFW+Y+TW 
Sbjct:   178 LVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWF 237

Query:   326 FWI-TPXXXXXXXXXXXXXXXXXWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEP 384
             FW                     +YNF K WK DPG+I A +++K + I+ELAE G+ + 
Sbjct:   238 FWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELAETGSLDL 297

Query:   385 LSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCF 444
               FCSTCL+RKP+RSKHC +CNRC+AKFDHHCPWVGNC+GA NH+YF+GY+  LLFM C+
Sbjct:   298 SIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICW 357

Query:   445 VLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLY 504
             ++YG   YW   C+   + +    ++   +  C  W+ ++ LN+  H +W+ VLL CQ+Y
Sbjct:   358 MIYGCISYWGLHCETTYTKDGFWTYIT-QIATCSPWMFWMFLNSVFHFMWVAVLLMCQMY 416

Query:   505 QIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDW 564
             QI  LG+TTNERMNA RY HF         SPF+ G ++N +DF  + C GLF+P  +DW
Sbjct:   417 QISCLGITTNERMNARRYKHFKVTTTS-IESPFNHGCVRNIIDFFEFRCCGLFRPVIVDW 475

Query:   565 MKRYEVYTEPTSLSDKYQFV 584
              ++Y +  +  S S  YQ V
Sbjct:   476 TRQYTIEYDQISGSG-YQLV 494

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39010	AKR1_YEAST	2, ., 3, ., 1, ., -	0.3043	0.8167	0.6243	yes	N/A
Q4I8B6	AKR1_GIBZE	2, ., 3, ., 1, ., -	0.3129	0.8304	0.6908	yes	N/A
Q6C520	AKR1_YARLI	2, ., 3, ., 1, ., -	0.3164	0.7962	0.6623	yes	N/A
Q80TN5	ZDH17_MOUSE	2, ., 3, ., 1, ., -	0.4716	0.9469	0.875	yes	N/A
P0CS66	AKR1_CRYNJ	2, ., 3, ., 1, ., -	0.3133	0.8116	0.6108	yes	N/A
Q8IUH5	ZDH17_HUMAN	2, ., 3, ., 1, ., -	0.4698	0.9469	0.875	yes	N/A
Q6BP80	AKR1_DEBHA	2, ., 3, ., 1, ., -	0.3043	0.8595	0.6114	yes	N/A
Q876A6	AKR1_NAUCC	2, ., 3, ., 1, ., -	0.3191	0.8013	0.6182	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	584
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	2e-41
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-31
COG5273	309	COG5273, COG5273, Uncharacterized protein containi	7e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-26
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-23
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-15
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-12
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	9e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.004
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.004

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score =  146 bits (371), Expect = 2e-41
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 348 WYNFIKCWKGDPGVITAPQDEKFR---YIIELAERGTFEPLSFCSTCLVRKPIRSKHCSI 404
            +++ K    DPG +     EK +      E  E    + L FCSTC + KP RS HC +
Sbjct: 1   LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEEDELKFCSTCNIIKPPRSHHCRV 60

Query: 405 CNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHE 464
           CNRCV +FDHHCPW+ NCIG +NHKYF+ ++  L      +L     Y     +      
Sbjct: 61  CNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFF 120

Query: 465 REVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMN 518
             ++ +   +         +L+ +    ++++ LL   LY  I   +TT E + 
Sbjct: 121 FLILSLFSSI--------ILLVLSLFFLLFLSFLLFFHLYL-ILKNITTYEYIK 165

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  118 bits (298), Expect = 1e-31
 Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 31  NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
           N  D +  T LH AA N  +E++K  +  GA V+A   D + TPLH A + GHL+ V LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR-TPLHLAAKNGHLEIVKLL 59

Query: 91  IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
           ++ GAD    D +G+T +H AA+ G+  +V  L+  G +VN +D++G T L  +A  
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (296), Expect = 2e-31
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPLH A   GHL+ V LL+++GAD    D++G T +H AA+ GH  IV  L+ KG +VN 
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
           +D++G T L  +A    +LD  +LL+  GA    +DK  G   LH A    +   +  L+
Sbjct: 69  RDKDGNTPLHLAARN-GNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

 Score =  119 bits (300), Expect = 7e-30
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 9/243 (3%)

Query: 285 FISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITPVVNFFVSLLFFSTS 344
               +IV  V             + + ++  ++  +Y   +   +  +     +LF    
Sbjct: 9   STLGFIVFLVRLLR--TGLYAYKMFIGLFLLSRIVVYTLLVIVKSLSLVVLFIILFIVIL 66

Query: 345 GVLWYNFIKCWKGDPGVITAPQDE-KFRYIIE-LAERGTFEPLSFCSTCLVRKPIRSKHC 402
            +  ++++     DPG +        +R  I  L + G F   +FCSTC + KP RS HC
Sbjct: 67  VLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHC 126

Query: 403 SICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLF-MCCFVLYGIA--KYWKSKCQF 459
           SICNRCV KFDHHCPW+ NC+G +N+++F  ++   +      +L          S    
Sbjct: 127 SICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHD 186

Query: 460 QLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNA 519
                  ++F    +     ++   LL  F+  + +  L + +  QI   G +T E    
Sbjct: 187 TSLAICFLIFGCSLLG-VVFFIITTLLLLFLIYLILNNLTTIEFIQISR-GGSTLEFFPL 244

Query: 520 NRY 522
            R 
Sbjct: 245 CRE 247

Length = 309

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  102 bits (256), Expect = 7e-26
 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G DVN  D++  T LH AA N  +EI+K  + +GA V+A       TPLH A R G+
Sbjct: 27  LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGN 85

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
           LD V LL++HGAD    D +G T +H AA+ GH  +V  L+
Sbjct: 86  LDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 98.5 bits (246), Expect = 6e-25
 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 3/94 (3%)

Query: 41  LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
           LH AA N  +E++K  + +GA V+   GD   T LH A R G+L+ V LL++HGAD    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GD-TDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
           D +G+T +H AA+ G+  IV  L+  G ++NL+D
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.4 bits (235), Expect = 4e-23
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
           D +G T +H AA  GH  +V  L+  G +VN +D +G T L  +A     L+  +LL+  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEK 62

Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
           GA    +DK  GN  LH A    N   +  L+ H + +   +  G TP  L
Sbjct: 63  GADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 91.8 bits (227), Expect = 5e-21
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 9   NWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNR-----IEIMKYFISQGAIV 63
           +    +     V   + +G DVN  D++  T LH AA+N       IE+ K  +  GA +
Sbjct: 78  HSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL 137

Query: 64  DAIG--GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 121
           D      +   TPLHWA   G  D V LL++ GADP   +S G T +  AA+ G   +V 
Sbjct: 138 DVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVK 197

Query: 122 YLVAKGINVNLQ--DRNGMTALMWSAYKVFSLDP 153
            L+ KG++++L   +  G+     S   + +L  
Sbjct: 198 LLLDKGLHLSLLKFNLEGVANANVSKRNILNLTS 231

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.8 bits (208), Expect = 1e-19
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 11/98 (11%)

Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
           LH A + G+L+ V LL++ GAD  L D+   T +H AA+ G+  IV  L+  G +VN +D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 135 RNGMTALMWSA----YKVFSLDPTRLLITFGASTTIQD 168
           ++G TAL  +A     ++      +LL+  GA   ++D
Sbjct: 59  KDGNTALHLAARNGNLEIV-----KLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 37/78 (47%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G DVN  D  T T LH AA N  +EI+K  +  GA V+A   D   T LH A R G+
Sbjct: 17  LEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN-TALHLAARNGN 73

Query: 84  LDSVVLLIQHGADPTLMD 101
           L+ V LL++HGAD  L D
Sbjct: 74  LEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 81.5 bits (201), Expect = 2e-16
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 6/195 (3%)

Query: 15  LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATP 74
           + K  +   ++ G DVN  D+E  T LH+A     +E +K     GA V+ I  D    P
Sbjct: 102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYP 160

Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
           +H A +    D + LL++ GA   + D+ G + +H AA++G    +  L+  G ++  + 
Sbjct: 161 IHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC 220

Query: 135 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI-YAKNHVAITTLVS 193
           +NG T L  +     S     LLI   AS   QD I G+  LH AI    +   I  L+ 
Sbjct: 221 KNGFTPLHNAIIHNRSAIE--LLIN-NASINDQD-IDGSTPLHHAINPPCDIDIIDILLY 276

Query: 194 HTSSLEIPNAQGLTP 208
           H + + I + +G  P
Sbjct: 277 HKADISIKDNKGENP 291

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 74.5 bits (182), Expect = 5e-15
 Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 28  QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 87
            D        + LL  A+++  +  +       A            PLH A  +G    V
Sbjct: 35  SDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGR-----LPLHSAASKGDDKIV 89

Query: 88  VLLIQHGADPTLMDSEGSTCIHQAA-----QFGHTRIVAYLVAKGI---NVNLQDRNGMT 139
            LL+  GAD    D++G T +H AA       G+  +   L+  G      NL+D +G T
Sbjct: 90  KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT 149

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            L W+A      D   LL+  GA    ++  +G  AL  A        +  L+     L 
Sbjct: 150 PLHWAALN-GDADIVELLLEAGADPNSRNS-YGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Query: 200 I 200
           +
Sbjct: 208 L 208

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH A I  +++IMK  I++GA  D    D + +PLH A   G +  + LLI H A   
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTD-KFSPLHLAVMMGDIKGIELLIDHKACLD 162

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
           + D  G T +  A   G   I   L+  G N++   +NG  A +  A +   +D  RL I
Sbjct: 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222

Query: 159 TFGASTTIQDKIHG 172
             GA   I   I G
Sbjct: 223 KRGADCNIMFMIEG 236

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.0 bits (160), Expect = 4e-12
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY----KVFSLDPTRL 156
           D +G   +H AA  G  +IV  L+A G +VN +D +G T L  +A        +++  +L
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 157 LITFGASTTI---QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
           L+  GA   +   +D+  GN  LHWA    +   +  L+   +     N+ G+T    
Sbjct: 130 LLEAGADLDVNNLRDE-DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 51  EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 110
           EI K  +S GA ++        T LH+AT         LL+ +GA+  + D   ++ +H 
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207

Query: 111 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
           A +  +  IV  L+  G + + +D+ G T L  S       D  +LL+  G     +  I
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267

Query: 171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
            G  ALH +I ++  + +  L+ + + +   N+  LTP
Sbjct: 268 LGLTALHSSIKSERKLKL--LLEYGADINSLNSYKLTP 303

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
           T LH A   G L+ V  L++ G D    D +G+T +H AA+ G+  ++  L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 47  NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH---LDSVVLLIQHGADPTLMDSE 103
           N  +E ++  ++ GA V+  G     TPLH           D V LL++ GAD    +  
Sbjct: 24  NVTVEEVRRLLAAGADVNFRGE-YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC 82

Query: 104 GSTCIHQAAQFGHT-RIVAYLVAKGINVNLQDRNGMTALMWSAY-KVFSLDPT--RLLIT 159
           G T +H       T  ++  L+  G +VN +D+ G T L    Y   F+++P   RLL+ 
Sbjct: 83  GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL--HVYLSGFNINPKVIRLLLR 140

Query: 160 FGASTTIQDKIHGNVALHWAIYAKNH 185
            GA     D  +G   L   +  K+ 
Sbjct: 141 KGADVNALDL-YGMTPLA--VLLKSR 163

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 29/183 (15%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNR--IEIMKYFISQGAI---VDAIGGDLQATPLHWA 78
           +  G DVN  D   +T L     +    +E+++  I  GA    VD        + LH  
Sbjct: 139 LRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF----RSLLHH- 193

Query: 79  TRQGHLDS-------VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR--IVAYLVAKGIN 129
               HL S       V  LI+ G DP   D  G+T +H  A     +  +V  L+  GI+
Sbjct: 194 ----HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS 249

Query: 130 VNLQDRNGMTALMWSAYKVFSLDPT--RLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 187
           +N ++R G T L ++A      +P   R LI  GA         GN  L   +   N  A
Sbjct: 250 INARNRYGQTPLHYAAV---FNNPRACRRLIALGADINAVSS-DGNTPLSLMVRNNNGRA 305

Query: 188 ITT 190
           +  
Sbjct: 306 VRA 308

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRI--EIMKYFISQGAIVDAI---------GGDLQA--- 72
           G +VN  +S+   LLH    +N+I  +I+K  I +G  ++A          G  +     
Sbjct: 131 GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDV 190

Query: 73  ---TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
              TPLH+A    + + V  L+  GA+P L++  G T +H A    +  I   L+  G +
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Query: 130 VNLQDRN 136
           +      
Sbjct: 251 IKTIIET 257

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 12  EFELTKVFVGKCVEAGQDVNEPDSETV-TLLHWAAINNRIEIMKYFISQGAIVDAIGGDL 70
           E E+TK+ +      G D+N  D     T LH+A  N    + +  +S GA V+ I    
Sbjct: 146 EAEITKLLL----SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN-IPDKT 200

Query: 71  QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF-GHTRIVAYLVAKGIN 129
             +PLH A +  +   V +L+++GA     D  G+T +H +  +     I+  L+  G++
Sbjct: 201 NNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD 260

Query: 130 VNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTTIQD 168
           VN +    G+TAL  S   + S    +LL+ +GA     +
Sbjct: 261 VNAKSYILGLTALHSS---IKSERKLKLLLEYGADINSLN 297

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 51/222 (22%), Positives = 86/222 (38%), Gaps = 37/222 (16%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR--- 80
           +  G +VN+PD   +T LH          MK  I       ++   L A    +  R   
Sbjct: 57  LTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS-INKCSVFYTLVAIKDAFNNRNVE 115

Query: 81  ----------QGHLDS------------------VVLLIQHGADPTLMD-SEGSTCIHQA 111
                     +                         LL+ +GAD  + D  +G+T +H A
Sbjct: 116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYA 175

Query: 112 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 171
            +    R+   L++ G NVN+ D+    + +  A K ++     +L+  GAST  +DK  
Sbjct: 176 TENKDQRLTELLLSYGANVNIPDK-TNNSPLHHAVKHYNKPIVHILLENGASTDARDK-C 233

Query: 172 GNVALHWAI-YAKNHVAITTLVSHTSSLEIPNA-QGLTPFML 211
           GN  LH ++ Y K++  +  L+ H   +   +   GLT    
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           T LH+A ++G L+S+ +L ++GAD  + D  G   IH A +     I+  L+ KG   N+
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
           +D NG + L  +A +       +LLI  G     + K +G   LH AI   N  AI  L+
Sbjct: 186 KDNNGESPLHNAA-EYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAII-HNRSAIELLI 242

Query: 193 SHTSSLEIPNAQGLTPF 209
           ++ +S+   +  G TP 
Sbjct: 243 NN-ASINDQDIDGSTPL 258

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 26/197 (13%)

Query: 36  ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 95
           ET T L  A  +   +I++ FI  GA ++ I   +   PL  A + G  D + LLI +G 
Sbjct: 34  ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI-PHPLLTAIKIGAHDIIKLLIDNGV 92

Query: 96  DPTLM-----------------------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           D +++                       D+E  T +H A + G    +  L   G +VN+
Sbjct: 93  DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI 152

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
           +D NG   +   A K    D  +LL+  GA   ++D  +G   LH A    ++  I  L+
Sbjct: 153 EDDNGCYPIH-IAIKHNFFDIIKLLLEKGAYANVKDN-NGESPLHNAAEYGDYACIKLLI 210

Query: 193 SHTSSLEIPNAQGLTPF 209
            H + +      G TP 
Sbjct: 211 DHGNHIMNKCKNGFTPL 227

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 27/141 (19%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAIN--NRIEIMKYFISQGA---IVDAIGGDLQATPLHWA 78
           +E G +VN PD+  +T L +A     N   I++Y +  GA   I ++ G       LH  
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE----NLLHLY 148

Query: 79  TRQGH--LDSVVLLIQHGADPTLMDS----------------EGSTCIHQAAQFGHTRIV 120
                  L  + LLI  G D    +                  G T +H A    +   V
Sbjct: 149 LESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208

Query: 121 AYLVAKGINVNLQDRNGMTAL 141
            YL+  G N NL ++ G T L
Sbjct: 209 KYLLDLGANPNLVNKYGDTPL 229

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
           G T +H+AA  G   +V YL+ KG+++N  D +G TAL  +A  
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN 44

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.6 bits (132), Expect = 8e-08
 Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 19/198 (9%)

Query: 24  VEAGQDVNEPDSETVTLLHW---AAINNRIEIMKYFISQGAIVDA--IGGDLQATPLH-W 77
           + AG DVN       T LH     +     +I++  +  GA V+A    G    TPLH +
Sbjct: 34  LAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGF---TPLHLY 90

Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ--AAQFGHTRIVAYLVAKGINVNLQDR 135
                 LD + LLI+ GAD    D  G T +H   +    + +++  L+ KG +VN  D 
Sbjct: 91  LYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL 150

Query: 136 NGMTALMWSAYKVF---SLDPTRLLITFGASTTIQDKIHGNVALH-WAIYAKNHVAI-TT 190
            GMT L  +        +++  RLLI  GA     D       LH      K    I   
Sbjct: 151 YGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDR-FRSLLHHHLQSFKPRARIVRE 207

Query: 191 LVSHTSSLEIPNAQGLTP 208
           L+         +  G TP
Sbjct: 208 LIRAGCDPAATDMLGNTP 225

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 37 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI 91
            T LH AAI+ R+E++KY + +G  ++    D   T LH A   G+L+ + LL+
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMD 101
           TPLH A R GHL+ V LL++ GAD    D
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.0 bits (124), Expect = 7e-07
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 32/186 (17%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G DVN  D   +T +H+AA     +++   +S GA V+ I  D   + L  A    +
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD-DLSVLECAVDSKN 223

Query: 84  LDSV-----------------------------VLLIQHGADPTLMDSEGSTCIHQAAQF 114
           +D++                             +LL   G     +D   +T +H A+Q 
Sbjct: 224 IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA 283

Query: 115 GH-TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN 173
              +R+V  L+ +G +VN ++  G T L   A   +  +  R LI  GA     D+++  
Sbjct: 284 PSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY-I 342

Query: 174 VALHWA 179
             LH A
Sbjct: 343 TPLHQA 348

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 90  LIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           L++HG  D    D  G+T +H AA++G   +V +L+  G+++NL+D +G+TAL
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 18/176 (10%)

Query: 44  AAINNRIEIMKYFISQG-----AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           A +   ++I +  +  G      I D I      +P+  A +    +++ LL++HGA P 
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGI------SPIKLAMKFRDSEAIKLLMKHGAIPD 62

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-LQDRNGMTALMWSAYKVFSLDPTRLL 157
           +   +  + +H A + G  + V  L+  G   + +  ++GMT L   A  +  LD  +LL
Sbjct: 63  VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKLDIMKLL 121

Query: 158 ITFGASTTIQ--DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
           I  GA   I   DK      LH A+   +   I  L+ H + L+I +  G TP ++
Sbjct: 122 IARGADPDIPNTDKF---SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII 174

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR 135
           +G+T +H AA+ GH  +V  L+  G +VN +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 9/198 (4%)

Query: 19  FVGKCVEAGQDVNEPDSETVTLLHWAAINN-RIEIMKYFISQGAIVDAIGGDLQATPLHW 77
            V K +E G DVN  + +  T L+  A N    E ++  I  GA V+A    L  TPLH 
Sbjct: 289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQ 347

Query: 78  A-TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
           A T   + D V+ L++ GA+    D    T IH AA   +  I+  L+  G ++    + 
Sbjct: 348 ASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK 407

Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV---AITTLVS 193
             TAL ++          + LI  GA+   ++K   +  LH+A   K +     I  L+ 
Sbjct: 408 IGTALHFALCGTNPYMSVKTLIDRGANVNSKNK-DLSTPLHYA--CKKNCKLDVIEMLLD 464

Query: 194 HTSSLEIPNAQGLTPFML 211
           + + +   N Q   P ++
Sbjct: 465 NGADVNAINIQNQYPLLI 482

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 37  TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
           TV L   AA  + +   +  ++ GA  +    D + TPLH A   GH+  V +L++ GAD
Sbjct: 83  TVELCQLAASGDAVGA-RILLTGGADPNCRDYDGR-TPLHIACANGHVQVVRVLLEFGAD 140

Query: 97  PTLMDSEGSTCIHQAAQFGHTRIVAYL 123
           PTL+D +G T +  A + G   +V  L
Sbjct: 141 PTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 28/212 (13%)

Query: 22  KCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATR 80
             +      +    + V  L+ A     I+++K  +  GA I  +   +   TPLH+ + 
Sbjct: 20  YIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNS--TPLHYLSN 77

Query: 81  QGH-----LDSVVLLIQHGADPTLMDSEGSTCIHQAAQ--FGHTRIVAYLVAKGINVNLQ 133
             +      + V LL+++GA+    D+ G T +  A         IV YL+  G NVN++
Sbjct: 78  IKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK 137

Query: 134 DRNGMTALMWSA-----------------YKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
           + +G   L                       + + +    L+++G    I+D   G   L
Sbjct: 138 NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVY-GFTPL 196

Query: 177 HWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
           H+A+Y  N   +  L+   ++  + N  G TP
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP 228

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 90  LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA---- 145
           L++   DP + DS+G T +H AA  G+   V  L+    NV+++D NG TA +W+A    
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA-LWNAISAK 602

Query: 146 -YKVFSL 151
            +K+F +
Sbjct: 603 HHKIFRI 609

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 39/140 (27%)

Query: 61  AIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 119
           A +D   GD +  TPLH A  +G+ D V++L++H  +  + D+ G+T +  A    H +I
Sbjct: 547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKI 606

Query: 120 --VAY-----------------------------LVAKGINVNLQDRNGMTAL---MWSA 145
             + Y                             L+ +G+NV+ +D  G TAL   M   
Sbjct: 607 FRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAED 666

Query: 146 YKVFSLDPTRLLITFGASTT 165
           +    +D  RLLI  GA   
Sbjct: 667 H----VDMVRLLIMNGADVD 682

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 57  ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
           +  G I          TPLH A + G L+ V  L++ G D  L DS+G T +  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 9e-06
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 21/190 (11%)

Query: 41  LHWAAINNRIEIMKYF---ISQGAIVDA-----IGGDLQA------TPLHWATRQGHLDS 86
           +H+  IN  IE MK     I Q  ++ A      G D+ A      TP+H+A  +G+   
Sbjct: 134 IHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKM 193

Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
           V LL+ +GAD  ++  +  + +  A    +   +  ++    N+N   +N ++ L   A 
Sbjct: 194 VNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN---KNDLSLL--KAI 248

Query: 147 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTLVSHTSSLEIPNAQG 205
           +   L+ + LL   G S    D    N  LH A  A +    +  L+   + +   N +G
Sbjct: 249 RNEDLETSLLLYDAGFSVNSID-DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG 307

Query: 206 LTPFMLLEEN 215
            TP  L+ +N
Sbjct: 308 ETPLYLMAKN 317

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 37/104 (35%)

Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
           +H AA+ G+  +V  L+ KG +VNL D +                               
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT------------------------------ 30

Query: 168 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
                  ALH A    N   +  L+ H + +   +  G T   L
Sbjct: 31  -------ALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHL 67

Length = 91

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 24  VEAGQDVNEPDSETVT-----LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 78
           +  G +VN  D+E  T     L +     + ++I+K  I  GA ++    D + TPL+  
Sbjct: 58  INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE-TPLYCL 116

Query: 79  TRQGHLDS---VVLLIQHGADPTLMDSEGSTCIHQAAQFGHT---RIVAYLVAKGINVN 131
              G++++   ++ +I++GAD TL+D +G T +    Q  H     I+  L+ KG+++N
Sbjct: 117 LSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN 175

Length = 489

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDA 65
          T LH AA N  +E++K  +  GA V+A
Sbjct: 4  TPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 21/94 (22%)

Query: 69  DLQATPLHWATRQGHLDSVVL---------------------LIQHGADPTLMDSEGSTC 107
           +  ATP H  T +  +D VV                      L+  GADP   D +G T 
Sbjct: 59  NKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTP 118

Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           +H A   GH ++V  L+  G +  L D++G T L
Sbjct: 119 LHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL 152

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 73 TPLHWATRQGHLDSVVLLIQHGADPTL 99
          TPLH A   G+L+ V LL+  GAD   
Sbjct: 4  TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 14/178 (7%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G +VN  D    T +H+AA+ N + I+   +  GA ++A+   +  T LH+A    +
Sbjct: 362 LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKI-GTALHFALCGTN 420

Query: 84  -LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG-HTRIVAYLVAKGINVN-LQDRNGMTA 140
              SV  LI  GA+    + + ST +H A +      ++  L+  G +VN +  +N    
Sbjct: 421 PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPL 480

Query: 141 LMWSAYKVFSLDPTRLLITFGA----STTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
           L+   Y         +L+ +GA    S  +   ++ N+     I A  H+ I   + H
Sbjct: 481 LIALEYHGI----VNILLHYGAELRDSRVLHKSLNDNMFSFRYIIA--HICIQDFIRH 532

Length = 682

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 77/237 (32%)

Query: 25  EAGQDVNEPDSETVTLLHW------------AAINN--RIEIMKYFISQGAIVDAIGGDL 70
           E G D+NEPD+   T+LH                +N  R+++++  IS GA + A+   L
Sbjct: 340 EYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-NCL 398

Query: 71  QATPL--HWATRQGHL----------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
             TPL  +  T Q ++          D V+ +++H     L+     T            
Sbjct: 399 GYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDT----------PC 448

Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH------- 171
           I+ +++AK         N  T L    Y+ +             ST I D  H       
Sbjct: 449 IIHHIIAK--------YNIPTDLYTDEYEPYD------------STKIHDVYHCAIIERY 488

Query: 172 --------GNVALHWAIYAKNHVAITT-----LVSHTSSLEIPNAQGLTPFMLLEEN 215
                   G   LH +I +  +  I       L+S   ++ IP   G+TP ML   N
Sbjct: 489 NNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRN 545

Length = 764

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 73 TPLHWATRQGHLDSVVLLIQHGADP 97
          TPLH A R G+L+ V LL++HGAD 
Sbjct: 4  TPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 23 CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI 57
           +E G D+N  D +  T LH AA N  +E++K  +
Sbjct: 20 LLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 24 VEAGQ-DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 78
          +E G  D+N  D    T LH AA    +E++++ +  G  ++    D   T L  A
Sbjct: 2  LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 39 TLLHWAAINNRIEIMKYFISQGAIVDA 65
          T LH AA N  +E++K  +  GA ++A
Sbjct: 4  TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 123 LVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
           L+  G I++N  D NG T L  +A    +L+  + L+  G    ++D   G  AL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYG-ALELVQWLLKPGVDLNLRDS-DGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 24  VEAGQDVNEPDSETVTLLHWAA---INNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
           +E G   +  D    T LH +     +   +I+K  +  G  V+A    L  T LH + +
Sbjct: 221 LENGASTDARDKCGNTPLHISVGYCKD--YDILKLLLEHGVDVNAKSYILGLTALHSSIK 278

Query: 81  QGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
                 + LL+++GAD   ++S   T +  A
Sbjct: 279 SE--RKLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 10/125 (8%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYK---VFSL 151
           +SEG    H+AA+ G   I+A              +N  D  G   +  +A K     + 
Sbjct: 18  NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAA 77

Query: 152 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNAQGLTPFM 210
           +    LI  GA    Q+ + G+ ALH A + ++H     L       L   NA   +PF 
Sbjct: 78  EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFE 137

Query: 211 LLEEN 215
           L  +N
Sbjct: 138 LAIDN 142

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	584
KOG0509|consensus	600		100.0
KOG1314|consensus	414		100.0
KOG1315|consensus	307		100.0
KOG4412|consensus	226		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG1311|consensus	299		100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0509|consensus	600		100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	99.98
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	99.98
PHA03100	480	ankyrin repeat protein; Provisional	99.98
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
KOG1313|consensus	309		99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0510|consensus	929		99.96
KOG0510|consensus	929		99.96
KOG0508|consensus	615		99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG1312|consensus	341		99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG4177|consensus	1143		99.93
KOG0508|consensus	615		99.92
KOG4177|consensus	1143		99.92
KOG0502|consensus	296		99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0502|consensus	296		99.9
KOG0505|consensus	527		99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0507|consensus	854		99.87
KOG0514|consensus	452		99.85
KOG0507|consensus	854		99.85
KOG0514|consensus	452		99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
KOG0512|consensus	228		99.79
KOG4369|consensus	2131		99.78
KOG0512|consensus	228		99.76
KOG0505|consensus	527		99.75
KOG0195|consensus	448		99.75
KOG0195|consensus	448		99.74
KOG3676|consensus	782		99.74
KOG3676|consensus	782		99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
KOG4369|consensus	2131		99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG4214|consensus	117		99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
KOG4214|consensus	117		99.47
KOG1710|consensus	396		99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.28
KOG1710|consensus	396		99.27
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.23
KOG0515|consensus	752		99.17
KOG0515|consensus	752		99.12
KOG0783|consensus	1267		98.91
KOG0818|consensus	669		98.83
KOG0818|consensus	669		98.77
KOG0783|consensus	1267		98.73
PF13606	30	Ank_3: Ankyrin repeat	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.65
KOG0782|consensus	1004		98.61
KOG0506|consensus	622		98.56
PF13606	30	Ank_3: Ankyrin repeat	98.55
KOG0782|consensus	1004		98.55
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.49
KOG0506|consensus	622		98.46
KOG0705|consensus	749		98.31
KOG0522|consensus	560		98.26
KOG0705|consensus	749		98.23
KOG0522|consensus	560		98.21
KOG3609|consensus	822		98.11
KOG0520|consensus	975		98.04
KOG0521|consensus	785		98.01
KOG2384|consensus	223		97.96
KOG0521|consensus	785		97.86
KOG3609|consensus	822		97.81
KOG0511|consensus	516		97.68
KOG0520|consensus	975		97.67
KOG2384|consensus	223		97.66
KOG0511|consensus	516		97.63
KOG2505|consensus	591		96.81
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.6
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.29
KOG2505|consensus	591		96.1
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.9
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	93.09
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.42
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.21
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	83.88
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	83.8
KOG1311|consensus	299		82.5
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	81.56

>KOG0509|consensus

Probab=100.00  E-value=7.8e-90  Score=701.95  Aligned_cols=538  Identities=39%  Similarity=0.626  Sum_probs=449.5

Q ss_pred             hHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9492          16 TKVFVGKCVEA-GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG   94 (584)
Q Consensus        16 ~~~~l~~ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g   94 (584)
                      .-+.++.++|. |.++|+.|.+|.|+|||||.+|+.+++++|+++|+++|..++..+.||||||+++|+..+|++|+++|
T Consensus        56 ~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhG  135 (600)
T KOG0509|consen   56 ELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHG  135 (600)
T ss_pred             hHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcC
Confidence            44567777888 99999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCc
Q psy9492          95 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  174 (584)
Q Consensus        95 ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  174 (584)
                      |||+.+|.+|.+|+|+|++.|+...+.||+.+|+|+|.+|.+|+|||||||++|...+ +..|++.|++++..|+..|+|
T Consensus       136 Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~-v~~LL~f~a~~~~~d~~~g~T  214 (600)
T KOG0509|consen  136 ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF-VRRLLKFGASLLLTDDNHGNT  214 (600)
T ss_pred             CCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH-HHHHHHhcccccccccccCCc
Confidence            9999999999999999999999999999999999999999999999999999996554 999999999999999769999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH-HHhc-ccccccc--hhhhcccc
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE-LKDH-YNTQQNI--IHRFSKSK  250 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~-~~~~-~~~~~~~--~~~~~~~~  250 (584)
                      |||||+..||..++.+|++.|++.+..|.+|+||+++|.++   +     ++..+.. ..+. ....+++  ..+..+..
T Consensus       215 pLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~---~-----~~~~~~h~~~~~~~~~~~K~~~~~~~~~~~  286 (600)
T KOG0509|consen  215 PLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER---K-----LVAALHHDVVERLGKVVKKWFLGSKLAALI  286 (600)
T ss_pred             hHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh---h-----hHHHhhccHHHhhcccccchhhhhHHHHHH
Confidence            99999999999999977888899999999999999999987   2     2222222 1111 1111111  11111111


Q ss_pred             cchhhHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhheeeeccccccccchhhhhhhhhheeeeehhhhcc
Q psy9492         251 TTRARYMFALPFVMFGLIGFIFQAQIAYMAKLALFISLYIVMQVIGTVMFDERLFKILPLPVYFATKFWIYITWLFWITP  330 (584)
Q Consensus       251 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  330 (584)
                      .+  ..+...+++.....|.|+..+++|+.+..++..++.......+.+.+....+++|.+++.++.||.++.|+..+.|
T Consensus       287 ~f--~~~~~~~~~~~~~~g~i~~~~~~w~i~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~~i~~  364 (600)
T KOG0509|consen  287 FF--IFLGLFYFISSWLPGVIFLINSLWLIKGLALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFSKITP  364 (600)
T ss_pred             HH--HHHHHHHHHHhhccchhhhhhhHHHHhhhhhhhhhhheeccchhhccccccchhHHHHHHHHHHHHHHhhheeccc
Confidence            11  1455566666677777777666788777555555555555666677778888999999999999999999987777


Q ss_pred             hhhHHHHHHHHHHHHHHHhhheeeeecCCCcccCCcchhhHHHHHHhhcCCCcCc-ccccccccccCCCCCcCccCCccc
Q psy9492         331 VVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPL-SFCSTCLVRKPIRSKHCSICNRCV  409 (584)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~c~~~kp~Rs~hC~~c~~cv  409 (584)
                      ...+.....+.+.++..++++.++..+|||++|.+.+...+.+.++.+.++++.. +||.+|.++||.|||||++|||||
T Consensus       365 ~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcV  444 (600)
T KOG0509|consen  365 YTLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCV  444 (600)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeecCCccchhhhhHHHH
Confidence            7666666777777777788888888899999999999889999999999999988 699999999999999999999999


Q ss_pred             cCCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHhhccchHHHHHHHHHH
Q psy9492         410 AKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAF  489 (584)
Q Consensus       410 ~~~DHhC~w~~ncIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (584)
                      .||||||||++||||.+|||+|+.|++++...+.++++....|+...+..+.. -.+.+..+...-.+.++...++...-
T Consensus       445 arfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~n~~  523 (600)
T KOG0509|consen  445 ARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENASTI-YVGFLIAVQAFRIPKPVTGNLLGNED  523 (600)
T ss_pred             hccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHhCCccceeeeeeccc
Confidence            99999999999999999999999999999999999999999998887544321 22334444444445555544444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHcChhHHHHHhhccccccccCCCCCcCCCCChhHHhhHHHHhCccCCCCCCCccccccc
Q psy9492         490 VHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMK  566 (584)
Q Consensus       490 ~~~~~~~~l~~~q~~~i~~~n~Tt~E~~~~~r~~~~~~~~~~~~~npf~~G~~~N~~~~~g~~~~~~~~p~~~~w~~  566 (584)
                      +...|.+.....|.++.++.++||+|+++..||+++.-+ .++..+|++.|+.+|+.|||-.++++...|.+++|..
T Consensus       524 ~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~~-~~~~~~~~s~g~~~Nl~df~~~~~~~~~~~~~~~~~~  599 (600)
T KOG0509|consen  524 LNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGIK-RGPTRSPFSPGPIRNLVDFFLCSDCNLPLNDRFLWDN  599 (600)
T ss_pred             cccccccccccccccceeeecccHHHHHHHHHhhccccc-cCcCCCCCCchhhhcchheeecccCcCcchhhcccCC
Confidence            455677777788888889999999999999999998876 5568999999999999999999999999999999974

>KOG1314|consensus

Probab=100.00  E-value=1.6e-39  Score=307.47  Aligned_cols=230  Identities=27%  Similarity=0.423  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHHhhheeeeecCCCcccCCcchhhHHHHHHhhcCCCcCcccccccccccCCCCCcCccCCccccCCcc
Q psy9492         335 FVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDH  414 (584)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DH  414 (584)
                      .-.+.|.....+.+++|+.+++++||++|..+.++...-        ..-.+||..|+.+|+||||||+.|||||.++||
T Consensus        49 ~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D--------~~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDH  120 (414)
T KOG1314|consen   49 PNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKD--------EMFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDH  120 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChh--------HHHHHHHhhccCcCCCccccchHHHHHHHhhcc
Confidence            346778888899999999999999999997654421100        012479999999999999999999999999999


Q ss_pred             cccccccccccCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhccccchhhHHHHHHHHhhccchHHHHHHH
Q psy9492         415 HCPWVGNCIGAKNHKYFVGYISSLLFMCCFVL--------YGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILL  486 (584)
Q Consensus       415 hC~w~~ncIG~~N~~~F~~fl~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (584)
                      ||||+|||||..||-+|+.||++..+.++-..        -.++.+|....+..-.  ++..-.....+    ...+.+.
T Consensus       121 HCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hl--p~v~ft~~~li----~~vfslg  194 (414)
T KOG1314|consen  121 HCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHL--PIVFFTLSSLI----ALVFSLG  194 (414)
T ss_pred             CCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccC--ceeeccHHHHH----HHHHHhH
Confidence            99999999999999999999999887554321        2233334332211110  00000000000    1233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHh----hccccccccCCCCCcCCCCChhHHhhHHHHhCccCCCCCCCccc
Q psy9492         487 NAFVHAIWITVLLSCQLYQIISLGMTTNERMN----ANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERI  562 (584)
Q Consensus       487 ~~~~~~~~~~~l~~~q~~~i~~~n~Tt~E~~~----~~r~~~~~~~~~~~~~npf~~G~~~N~~~~~g~~~~~~~~p~~~  562 (584)
                      +++...+.+++||+.|+.+|+ +|.|-+|.+-    ..|-.+......+++..|||.|++.|++++|-..+-  -.+++.
T Consensus       195 la~gv~la~t~Lf~~qlk~Il-~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf~~~~~--~~gdg~  271 (414)
T KOG1314|consen  195 LAIGVVLALTMLFFIQLKQIL-NNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVFFQNKK--EEGDGI  271 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHhhhccc--cCCCCc
Confidence            566677888899999999886 5999999877    333333333335778999999988899999987633  367889


Q ss_pred             ccc-----cccccCCCCCCCCCCc
Q psy9492         563 DWM-----KRYEVYTEPTSLSDKY  581 (584)
Q Consensus       563 ~w~-----~~~~~~~~~~~~~~~~  581 (584)
                      .|+     .+|+++.||+.||.++
T Consensus       272 ~wPv~~gc~qytlt~eql~qk~~k  295 (414)
T KOG1314|consen  272 EWPVVEGCVQYTLTIEQLTQKLDK  295 (414)
T ss_pred             cccccCcccccceeHHHHHHHHHh
Confidence            996     7899999999988765

>KOG1315|consensus

Probab=100.00  E-value=2.1e-37  Score=300.69  Aligned_cols=243  Identities=23%  Similarity=0.429  Sum_probs=172.0

Q ss_pred             ccchhhhhhhhhheeeeehhhhc-c-----hhhHHHHHHHHHHHHHHHhhheeeeecCCCcccCCcchhhHHHHHHhh--
Q psy9492         307 ILPLPVYFATKFWIYITWLFWIT-P-----VVNFFVSLLFFSTSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAE--  378 (584)
Q Consensus       307 ~~p~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~--  378 (584)
                      ++|..++.....|.+.++.+.+. +     .......+.+..+.+++.++|++++++|||.+|.......+....+..  
T Consensus        13 ~~~~~~i~~~~~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~   92 (307)
T KOG1315|consen   13 WIPVLIILLVIGWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGS   92 (307)
T ss_pred             chhheeeeeeEEEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccC
Confidence            45555555555555555543321 1     123345677778889999999999999999998533222111111100  


Q ss_pred             ----------cCCCcCcccccccccccCCCCCcCccCCccccCCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q psy9492         379 ----------RGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYG  448 (584)
Q Consensus       379 ----------~~~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DHhC~w~~ncIG~~N~~~F~~fl~~~~~~~~~~~~~  448 (584)
                                .+.....++|.+|+.+||+|||||++|+|||+++||||||+|||||.+|||+|++|++|..+++++.++.
T Consensus        93 ~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~  172 (307)
T KOG1315|consen   93 DNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVT  172 (307)
T ss_pred             cccccceeeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHH
Confidence                      1222367999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHhhhccccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHhhccccccccC
Q psy9492         449 IAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRYHHFIAN  528 (584)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~~i~~~n~Tt~E~~~~~r~~~~~~~  528 (584)
                      .........+.... ....+         ..++.+.++++..+++.++.++++|+++|. +|+||+|..+...+..    
T Consensus       173 ~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~-~N~TTiE~~~~~~~~~----  237 (307)
T KOG1315|consen  173 TLIGFTKYFQGGAG-PSSLL---------LFFIVFLFLVAIAFSISLSGLLCFHTYLIL-KNKTTIEAYKSPVFRS----  237 (307)
T ss_pred             HHHHHHHHHhcccc-CchhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchhHhhhccccccc----
Confidence            66654333211000 00000         123455566677778888889999999875 6999999988653332    


Q ss_pred             CCCCcCCCCChhHHhhHHHHhCccCCCCCCCcccccccc
Q psy9492         529 PQGQFISPFHRGRLQNFVDFTGWSCFGLFKPERIDWMKR  567 (584)
Q Consensus       529 ~~~~~~npf~~G~~~N~~~~~g~~~~~~~~p~~~~w~~~  567 (584)
                       +....|+|+.  ..|+.|+||.++..|+.|..-.|.+.
T Consensus       238 -~~~~~~~~~~--~~n~~~vfg~~~~~wl~P~~~s~~~~  273 (307)
T KOG1315|consen  238 -GLHNKNGFNL--YVNFREVFGSNLLYWLLPIDSSWGDG  273 (307)
T ss_pred             -cccccCCcce--eecHHHHhCCCceEEeccccCccccC
Confidence             1234566777  88999999999999999988888544

>KOG4412|consensus

Probab=100.00  E-value=2.8e-37  Score=267.41  Aligned_cols=206  Identities=26%  Similarity=0.349  Sum_probs=187.4

Q ss_pred             cccchhhhhhhHHHHHHHHHcCC-CCCCCCC-CCCcHHHHHHHcCCHHHHHHHH-HCCCcccccCCCCCCcHHHHHHHcC
Q psy9492           6 GVKNWYEFELTKVFVGKCVEAGQ-DVNEPDS-ETVTLLHWAAINNRIEIMKYFI-SQGAIVDAIGGDLQATPLHWATRQG   82 (584)
Q Consensus         6 ~~~~~~~~~~~~~~l~~ll~~g~-d~n~~d~-~g~t~Lh~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~g~tpLh~A~~~g   82 (584)
                      ...+....+...+-++.+++... .+|.+++ +|.|||||||..|+.+++++|+ +.+..+|.+++ .|+||||.|+..|
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~s~g   83 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAASNG   83 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhhhcC
Confidence            34444455667778888888765 6777765 9999999999999999999999 45677787755 4999999999999


Q ss_pred             CHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcC
Q psy9492          83 HLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG  161 (584)
Q Consensus        83 ~~~~v~~Ll~~-gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g  161 (584)
                      +.++|+.|+.+ |+|+|..+..|.|+||+|+..|..+++++|+++|+.++.+|..|.||||-||..| ..+++++|+..|
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavG-klkvie~Li~~~  162 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVG-KLKVIEYLISQG  162 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhcc-chhhHHHHHhcC
Confidence            99999999998 9999999999999999999999999999999999999999999999999999999 899999999999


Q ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q psy9492         162 ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN  215 (584)
Q Consensus       162 a~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~  215 (584)
                      +.+|.+|+ .|+||||.|...|+.++..+|+++|||++..|++| ||+..|...
T Consensus       163 a~~n~qDk-~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  163 APLNTQDK-YGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             CCCCcccc-cCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHH
Confidence            99999999 99999999999999999999999999999999999 998877653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.4e-34  Score=280.62  Aligned_cols=213  Identities=17%  Similarity=0.178  Sum_probs=192.9

Q ss_pred             hhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9492          13 FELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ   92 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~   92 (584)
                      ..-.+++++.|+++|+  +.+|.+|.||||+|+..|+.+++++|++.|++++..+   |.||||+|+..|+.++++.|++
T Consensus         8 ~~~~~~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d---~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          8 TWKSKQLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             ccCHHHHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC---CCCHHHHHHHCCCHHHHHHHHH
Confidence            3447889999999988  4679999999999999999999999999999988653   6899999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC-CcHHHHHHhhcCChhhHHHHHhcCCCcccccCCC
Q psy9492          93 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG-MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH  171 (584)
Q Consensus        93 ~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g-~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~  171 (584)
                      +|++++.+|..|.||||+|++.|+.+++++|+++|++++.++..| .||||+|+..| +.+++++|++.+++.  .|...
T Consensus        83 ~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g-~~eivk~LL~~~~~~--~d~~~  159 (284)
T PHA02791         83 SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN-DVSIVSYFLSEIPST--FDLAI  159 (284)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC-CHHHHHHHHhcCCcc--ccccc
Confidence            999999999999999999999999999999999999999999888 48999999988 899999999987653  23225


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHhcCCCccchHHHHHHHHHHHhcccc
Q psy9492         172 GNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP-FMLLEENIGAPWLGKATVDKITELKDHYNT  238 (584)
Q Consensus       172 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tp-l~lA~~~~~~~~l~~~~~~~l~~~~~~~~~  238 (584)
                      |.||||+|+..|+.+++++|+++|||++.+|..|.|| |++|+..++.+     +++.|.+.+...+.
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e-----~v~lLl~~Ga~in~  222 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLE-----MLQALFKYDINIYS  222 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHH-----HHHHHHHCCCCCcc
Confidence            8999999999999999999999999999999999987 99999999999     99999886555443

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=7.1e-35  Score=270.53  Aligned_cols=163  Identities=33%  Similarity=0.634  Sum_probs=123.4

Q ss_pred             hhheeeeecCCCcccCC----------cchhhHHHHHHhhcCCCcCcccccccccccCCCCCcCccCCccccCCcccccc
Q psy9492         349 YNFIKCWKGDPGVITAP----------QDEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPW  418 (584)
Q Consensus       349 ~~~~~~~~~dPG~~~~~----------~~~~~~~~~~~~~~~~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DHhC~w  418 (584)
                      ++|+++.++|||++|..          .++......+..+.+...+.++|.+|+..||+|||||+.||+||.+|||||||
T Consensus         2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w   81 (174)
T PF01529_consen    2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW   81 (174)
T ss_pred             EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence            46788899999999977          11111122333445566778999999999999999999999999999999999


Q ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy9492         419 VGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVL  498 (584)
Q Consensus       419 ~~ncIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  498 (584)
                      +|||||++|||+|++|+++..+++++.++..+.++.........  ...+. ..     ....+++++++++++++++.+
T Consensus        82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l  153 (174)
T PF01529_consen   82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISF--SSFWI-FS-----NFSSIFLLIISIFFFIFVGFL  153 (174)
T ss_pred             hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccccc-ch-----hhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888777665443221111  00000 00     000245666778889999999


Q ss_pred             HHHHHHHHHHcChhHHHHHhhc
Q psy9492         499 LSCQLYQIISLGMTTNERMNAN  520 (584)
Q Consensus       499 ~~~q~~~i~~~n~Tt~E~~~~~  520 (584)
                      ++.|+++++ +|+||+|.+|++
T Consensus       154 ~~~~~~~i~-~n~Tt~E~~~~~  174 (174)
T PF01529_consen  154 LIFQLYLIL-RNITTYERIKRK  174 (174)
T ss_pred             HHHHHHHHH-cCCcHHHHHHcC
Confidence            999999886 699999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=294.28  Aligned_cols=206  Identities=24%  Similarity=0.279  Sum_probs=186.1

Q ss_pred             chhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH-------------------------------------
Q psy9492           9 NWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIE-------------------------------------   51 (584)
Q Consensus         9 ~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~-------------------------------------   51 (584)
                      +.+......++++.|+++|+|+|.+|.+|.||||+||..|+.+                                     
T Consensus        42 h~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll  121 (477)
T PHA02878         42 HQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIIL  121 (477)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHH
Confidence            3445566889999999999999999999999999999865432                                     


Q ss_pred             ---------------------------HHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy9492          52 ---------------------------IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEG  104 (584)
Q Consensus        52 ---------------------------~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g  104 (584)
                                                 ++++|+++|++++..+...|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g  201 (477)
T PHA02878        122 TNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN  201 (477)
T ss_pred             hCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCC
Confidence                                       66677777888887766559999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCC
Q psy9492         105 STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN  184 (584)
Q Consensus       105 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~  184 (584)
                      .||||.|++.|+.+++++|++.|++++.+|..|.||||+|+..+.+.+++++|++.|+++|.++...|.||||+|  .++
T Consensus       202 ~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~  279 (477)
T PHA02878        202 NSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKS  279 (477)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccC
Confidence            999999999999999999999999999999999999999997755899999999999999998865799999999  568


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         185 HVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       185 ~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      .+++++|+++|||++..|..|.||+++|+..+
T Consensus       280 ~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        280 ERKLKLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence            89999999999999999999999999998754

>KOG1311|consensus

Probab=100.00  E-value=1.7e-33  Score=282.99  Aligned_cols=181  Identities=28%  Similarity=0.528  Sum_probs=127.2

Q ss_pred             cCCCcccCCcchhhHHHHH------HhhcCCCcCcccccccccccCCCCCcCccCCccccCCcccccccccccccCCHHH
Q psy9492         357 GDPGVITAPQDEKFRYIIE------LAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKY  430 (584)
Q Consensus       357 ~dPG~~~~~~~~~~~~~~~------~~~~~~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DHhC~w~~ncIG~~N~~~  430 (584)
                      +|||.+|+..++..+...+      ..+++.....++|.+|+.+||||||||+.||+||.||||||||+|||||++|||+
T Consensus        79 sdpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~  158 (299)
T KOG1311|consen   79 SDPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRY  158 (299)
T ss_pred             CCCceecCcccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHH
Confidence            6999998752111111101      1123334467999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy9492         431 FVGYISSLLFMCCFVLYGIAKYWKSKCQ-FQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISL  509 (584)
Q Consensus       431 F~~fl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~~i~~~  509 (584)
                      |+.|+++..+..++.+...+.++..... ....     +.. ............+.++++++...++.|+.+|++.+ .+
T Consensus       159 F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li-~~  231 (299)
T KOG1311|consen  159 FVLFLFYLALGVLLALAFLFYELLQRADNLKVN-----LTP-VLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLI-KS  231 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----ccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeE-ec
Confidence            9999998888887777666655433211 1111     000 00000111234445667778888889999999976 46


Q ss_pred             ChhHHHHHhhccccccccCCCCCcCCCCChhHHhhHHHHhCcc
Q psy9492         510 GMTTNERMNANRYHHFIANPQGQFISPFHRGRLQNFVDFTGWS  552 (584)
Q Consensus       510 n~Tt~E~~~~~r~~~~~~~~~~~~~npf~~G~~~N~~~~~g~~  552 (584)
                      |+||+|.++.  ++.      ....+|||+|.++|+.++||.+
T Consensus       232 ~~Tt~e~~~~--~~~------~~~~~~~~~g~~~n~~~~~~~~  266 (299)
T KOG1311|consen  232 GSTTYESIKS--LDF------VSRSNPYDLGLLKNLQEVFGGP  266 (299)
T ss_pred             Ccchhhhhhc--ccc------ccccCCCchhHHHHHHHHhCCC
Confidence            9999998876  111      1125999999999999999853

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.7e-32  Score=288.81  Aligned_cols=207  Identities=22%  Similarity=0.314  Sum_probs=187.4

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC--CHHHHHHHHHC
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG--HLDSVVLLIQH   93 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~   93 (584)
                      ..++++.|+++|+|+|.+|.+|.||||+|+..|+.+++++|+++|++++.++.. |.||||+|+..+  ..+++++|+++
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~-g~TpLh~A~~~~~~~~e~v~lLl~~  129 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQ-HKTPLYYLSGTDDEVIERINLLVQY  129 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC-CCCHHHHHHHcCCchHHHHHHHHHc
Confidence            457899999999999999999999999999999999999999999999977655 999999998876  48999999999


Q ss_pred             CCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC-ChhhHHHHHhcCCCcccccCCC
Q psy9492          94 GADPTL-MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF-SLDPTRLLITFGASTTIQDKIH  171 (584)
Q Consensus        94 gad~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~-~~~~~~~Ll~~ga~~~~~d~~~  171 (584)
                      |++++. .|..|.|||| |+..++.+++++|++.|++++.+|..|.||||+|+..+. ..+++++|++.|++++.+|. .
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~-~  207 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH-D  207 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC-C
Confidence            999995 6899999997 667799999999999999999999999999999886542 46899999999999999998 9


Q ss_pred             CCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC-ccchHHHHHHHHH
Q psy9492         172 GNVALHWAIYAK--NHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA-PWLGKATVDKITE  231 (584)
Q Consensus       172 g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~-~~l~~~~~~~l~~  231 (584)
                      |+||||+|+..|  +.+++++|++ |+|++.+|..|.|||++|++.++. +     +++.|.+
T Consensus       208 G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~-----~~~~Ll~  264 (446)
T PHA02946        208 GNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAH-----LINKLLS  264 (446)
T ss_pred             CCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHH-----HHHHHHh
Confidence            999999999986  7899999885 999999999999999999998774 4     5666655

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-32  Score=288.24  Aligned_cols=216  Identities=19%  Similarity=0.202  Sum_probs=200.0

Q ss_pred             hhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          12 EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        12 ~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      ......++++.|+++|+|+|..+.+|.||||+|+..|+.+++++|+++|++++..... +.||||.|+..|+.++++.|+
T Consensus        10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll   88 (413)
T PHA02875         10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPD-IESELHDAVEEGDVKAVEELL   88 (413)
T ss_pred             HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC-cccHHHHHHHCCCHHHHHHHH
Confidence            3455788999999999999999999999999999999999999999999998876544 899999999999999999999


Q ss_pred             HCCCCCC-CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCC
Q psy9492          92 QHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI  170 (584)
Q Consensus        92 ~~gad~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~  170 (584)
                      +.|++.+ ..+..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++.+|. 
T Consensus        89 ~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~-~~~~v~~Ll~~g~~~~~~d~-  166 (413)
T PHA02875         89 DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG-DIKGIELLIDHKACLDIEDC-  166 (413)
T ss_pred             HcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhcCCCCCCCCC-
Confidence            9998764 45778999999999999999999999999999999999999999999988 89999999999999999998 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL-TPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       171 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~-tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      .|.||||+|+..|+.+++++|+++|+|++..+..|. ||+++|+..++.+     +++.|.+.+..
T Consensus       167 ~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~-----iv~~Ll~~gad  227 (413)
T PHA02875        167 CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID-----IVRLFIKRGAD  227 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH-----HHHHHHHCCcC
Confidence            999999999999999999999999999999998885 7899999999998     99998775443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.5e-32  Score=267.93  Aligned_cols=207  Identities=18%  Similarity=0.165  Sum_probs=182.8

Q ss_pred             hhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy9492          10 WYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL   89 (584)
Q Consensus        10 ~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~   89 (584)
                      .+......++++.|++.|++++..|  |.||||+|+..|+.++++.|++.|++++.++.. |.||||+|+..|+.++++.
T Consensus        36 ~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~-G~TpLh~Aa~~g~~eivk~  112 (284)
T PHA02791         36 YAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDK-GNTALYYAVDSGNMQTVKL  112 (284)
T ss_pred             HHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHH
Confidence            3344557889999999999999864  689999999999999999999999999987665 9999999999999999999


Q ss_pred             HHHCCCCCCCCCCCC-ChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHhhcCChhhHHHHHhcCCCcccc
Q psy9492          90 LIQHGADPTLMDSEG-STCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ  167 (584)
Q Consensus        90 Ll~~gad~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~  167 (584)
                      |+++|++++.++..| .||||.|+..|+.+++++|++++.+.  .| ..|.||||+|+.+| +.+++++|+++|+++|..
T Consensus       113 Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g-~~eiv~lLL~~gAd~n~~  189 (284)
T PHA02791        113 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNG-HVDMMILLLDYMTSTNTN  189 (284)
T ss_pred             HHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcC-CHHHHHHHHHCCCCCCcc
Confidence            999999999999888 49999999999999999999987543  23 25899999999999 899999999999999999


Q ss_pred             cCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         168 DKIHGNVA-LHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       168 d~~~g~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      |. .|.|| ||+|+..|+.+++++|+++|+|++++|.+| ||+      ++.+     ++++|.+....
T Consensus       190 d~-~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e-----~~~~ll~~~~~  245 (284)
T PHA02791        190 NS-LLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAE-----IAKMIIEKHVE  245 (284)
T ss_pred             cC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHH-----HHHHHHHhhhh
Confidence            98 88877 999999999999999999999999999955 666      4444     78888774433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.3e-32  Score=294.31  Aligned_cols=213  Identities=24%  Similarity=0.361  Sum_probs=132.8

Q ss_pred             hhhHHHHHHHHHcCCCCCCCCCCCCcHHHH-----HHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHH--HcCCHHH
Q psy9492          14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHW-----AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT--RQGHLDS   86 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~-----A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~--~~g~~~~   86 (584)
                      ....++++.|+++|++++..+..|.||||.     |+..++.++++.|+++|++++..+.. |.||||+|+  ..|+.++
T Consensus        45 ~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~-g~tpL~~A~~~~~~~~~i  123 (480)
T PHA03100         45 ARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNN-GITPLLYAISKKSNSYSI  123 (480)
T ss_pred             cCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCC-CCchhhHHHhcccChHHH
Confidence            345566666666666666666666666666     66666666666666666666544333 666666666  6666666


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCc
Q psy9492          87 VVLLIQHGADPTLMDSEGSTCIHQAAQFG--HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST  164 (584)
Q Consensus        87 v~~Ll~~gad~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~  164 (584)
                      ++.|+++|++++..|..|.||||.|+..|  +.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|+++
T Consensus       124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~-~~~iv~~Ll~~ga~~  202 (480)
T PHA03100        124 VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG-NIDVIKFLLDNGADI  202 (480)
T ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC-CHHHHHHHHHcCCCc
Confidence            66666666666666666666666666666  666666666666666666666666666666655 566666666666666


Q ss_pred             ccccCCCC------CcHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         165 TIQDKIHG------NVALHWAIYAKN--HVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       165 ~~~d~~~g------~TpLh~A~~~g~--~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      +..+. .|      .||||.|+..|+  .++++.|+++|+|++.+|..|.|||++|+..++.+     +++.|.+.+.
T Consensus       203 ~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~-----iv~~Ll~~ga  274 (480)
T PHA03100        203 NAGDI-ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE-----FVKYLLDLGA  274 (480)
T ss_pred             cCCCC-CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH-----HHHHHHHcCC
Confidence            65555 55      566666666666  66666666666666666666666666666666555     5555555333

>KOG4412|consensus

Probab=100.00  E-value=7.2e-33  Score=240.09  Aligned_cols=189  Identities=28%  Similarity=0.345  Sum_probs=173.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCC-cccccCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCChHHHHHHH
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQ  113 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~t~L~~A~~  113 (584)
                      .+.++.+.++......-++.+++... ..+.+++.+|+|||||||..|+.+++++|+ +.+..++.+|..|.||||+|+.
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            45678899999988888888888766 677777767999999999999999999999 5678899999999999999999


Q ss_pred             hCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492         114 FGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  192 (584)
Q Consensus       114 ~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll  192 (584)
                      .|+.++++-|+.+ |+|+|..++.|.|+||+|+.+| ..+++++|++.|+.++..|. .|.||||.|+..|+.+++++|+
T Consensus        82 ~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~-r~eIaqlLle~ga~i~~kD~-~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKG-RLEIAQLLLEKGALIRIKDK-QGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             cCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCC-hhhHHHHHHhcCCCCccccc-ccCchhHHHHhccchhhHHHHH
Confidence            9999999999999 9999999999999999999999 89999999999999999998 9999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         193 SHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       193 ~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      ..||.+|..|+.|+|||+.|.-.++.+     ....|.+
T Consensus       160 ~~~a~~n~qDk~G~TpL~~al~e~~~d-----~a~lLV~  193 (226)
T KOG4412|consen  160 SQGAPLNTQDKYGFTPLHHALAEGHPD-----VAVLLVR  193 (226)
T ss_pred             hcCCCCCcccccCccHHHHHHhccCch-----HHHHHHH
Confidence            999999999999999999997777777     4445544

>KOG0509|consensus

Probab=100.00  E-value=2.8e-32  Score=279.91  Aligned_cols=186  Identities=28%  Similarity=0.390  Sum_probs=174.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHhC
Q psy9492          38 VTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQFG  115 (584)
Q Consensus        38 ~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~t~L~~A~~~g  115 (584)
                      ...++.|++.|.++.++.+++. |.+++..++ +|.|+|||||.+++.+++++|+++|+|+|+.+ ..+.||||.|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDR-EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            4567899999999999999998 999998877 59999999999999999999999999999988 67899999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      +..++.+|+++|+|++.+|.+|.||+|.|++.+ +.-.+-+|+.+|+++|.+|+ +|+||||||+.+|....++.|++.|
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~-~~~~vayll~~~~d~d~~D~-~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFG-HTALVAYLLSKGADIDLRDN-NGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhC-chHHHHHHHHhcccCCCcCC-CCCCHHHHHHHhcccHHHHHHHHhc
Confidence            999999999999999999999999999999998 78899999999999999999 9999999999999988899999999


Q ss_pred             CCCCCCC-CCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         196 SSLEIPN-AQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       196 ad~~~~n-~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      ++++.+| .+|.||||.|+..|+..     .+..+.+
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~-----~v~Ll~~  233 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLT-----AVKLLLE  233 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcc-----eEehhhh
Confidence            9999998 99999999999999999     5554444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.8e-32  Score=293.26  Aligned_cols=211  Identities=21%  Similarity=0.261  Sum_probs=186.8

Q ss_pred             hhhHHHHHHHHHcC-CCCCCC-CCCCCcHHHHHHHc--CCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCC--HHHH
Q psy9492          14 ELTKVFVGKCVEAG-QDVNEP-DSETVTLLHWAAIN--NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH--LDSV   87 (584)
Q Consensus        14 ~~~~~~l~~ll~~g-~d~n~~-d~~g~t~Lh~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~--~~~v   87 (584)
                      ....++++.|+++| +|+|.+ |..|.||||.|+.+  ++.+++++|+++|+++|..+.. |.||||+|+..|+  .+++
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~-G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNH-LITPLHTYLITGNVCASVI  230 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCCCHHHH
Confidence            46789999999999 999999 99999999998754  6789999999999999987765 9999999999995  5899


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHH-------------------------------------HHhCCHHHHHHHHHCCCCC
Q psy9492          88 VLLIQHGADPTLMDSEGSTCIHQA-------------------------------------AQFGHTRIVAYLVAKGINV  130 (584)
Q Consensus        88 ~~Ll~~gad~~~~d~~g~t~L~~A-------------------------------------~~~g~~~~v~~Ll~~g~~~  130 (584)
                      ++|+++|+|++.+|..|.||||.|                                     ++.|+.+++++|+++|+++
T Consensus       231 klLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        231 KKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            999999999999999999999965                                     4457889999999999999


Q ss_pred             CCCCCCCCcHHHHHHhh-cCChhhHHHHHhcCCCcccccCCCCCcHHHHHHH--------------cCCHHHHHHHHhcC
Q psy9492         131 NLQDRNGMTALMWSAYK-VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY--------------AKNHVAITTLVSHT  195 (584)
Q Consensus       131 ~~~d~~g~t~Lh~Aa~~-~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~--------------~g~~~~v~~Ll~~g  195 (584)
                      +.+|..|+||||+|+.. +.+.+++++|++.|+++|.+|. .|+||||+|+.              .++.+++++|+++|
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~-~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDN-IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCC-CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            99999999999998754 3368999999999999999998 99999999875              36899999999999


Q ss_pred             CCCCCCCCCCCCHHHH----HHhcCCCccchHHHHHHHHH
Q psy9492         196 SSLEIPNAQGLTPFML----LEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       196 ad~~~~n~~g~tpl~l----A~~~~~~~~l~~~~~~~l~~  231 (584)
                      +|++.+|..|.|||+.    |...++.+     +++.|.+
T Consensus       390 ADIn~kn~~G~TPLh~y~~~a~n~~~~d-----IvklLis  424 (764)
T PHA02716        390 ADITAVNCLGYTPLTSYICTAQNYMYYD-----IIDCLIS  424 (764)
T ss_pred             CCCCCcCCCCCChHHHHHHHHHhcChHH-----HHHHHHh
Confidence            9999999999999994    23344555     7777765

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.2e-32  Score=291.69  Aligned_cols=213  Identities=24%  Similarity=0.312  Sum_probs=188.8

Q ss_pred             hhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC---CHH
Q psy9492          14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAIN-----NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG---HLD   85 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~-----~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g---~~~   85 (584)
                      +...++++.|+++|+|+|..|..|.||||.|+.+     ++.+++++|+++|+++|..+.. |.||||+|+..+   +.+
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~-G~TpLh~a~~~~~~~~~~  126 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSD-GETPLYCLLSNGYINNLE  126 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCC-cCcHHHHHHHcCCcChHH
Confidence            3467999999999999999999999999999865     6789999999999999988765 999999999976   789


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHhCC---HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHhhc---CChhhHHHHH
Q psy9492          86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGH---TRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV---FSLDPTRLLI  158 (584)
Q Consensus        86 ~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~Aa~~~---~~~~~~~~Ll  158 (584)
                      ++++|+++|+|++.+|..|.||||.|++.++   .+++++|+++|++++..+ ..|.||||.++..+   .+.+++++|+
T Consensus       127 iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li  206 (489)
T PHA02798        127 ILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFV  206 (489)
T ss_pred             HHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHH
Confidence            9999999999999999999999999999988   999999999999999885 46899999887532   2567788887


Q ss_pred             hcCCCc---------------------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy9492         159 TFGAST---------------------------------------TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  199 (584)
Q Consensus       159 ~~ga~~---------------------------------------~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  199 (584)
                      +.|+++                                       |.+|. .|+||||+|+..|+.+++++|+++|||++
T Consensus       207 ~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~-~G~TPL~~A~~~~~~~~v~~LL~~GAdin  285 (489)
T PHA02798        207 DNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDE-LGFNPLYYSVSHNNRKIFEYLLQLGGDIN  285 (489)
T ss_pred             HCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCc-CCccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            776644                                       44565 79999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHH
Q psy9492         200 IPNAQGLTPFMLLEENIGAPWLGKATVDKITELK  233 (584)
Q Consensus       200 ~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~  233 (584)
                      .+|..|+|||++|+++++.+     +++.+.+.+
T Consensus       286 ~~d~~G~TpL~~A~~~~~~~-----iv~~lL~~~  314 (489)
T PHA02798        286 IITELGNTCLFTAFENESKF-----IFNSILNKK  314 (489)
T ss_pred             ccCCCCCcHHHHHHHcCcHH-----HHHHHHccC
Confidence            99999999999999999888     777776533

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=4e-31  Score=281.51  Aligned_cols=198  Identities=28%  Similarity=0.404  Sum_probs=184.4

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA   95 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga   95 (584)
                      ..++++.+++.|+|++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+
T Consensus       103 ~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~~g~  181 (434)
T PHA02874        103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN-GCYPIHIAIKHNFFDIIKLLLEKGA  181 (434)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHHCCC
Confidence            457788888899999999999999999999999999999999999999987655 9999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcH
Q psy9492          96 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA  175 (584)
Q Consensus        96 d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~Tp  175 (584)
                      +++.+|..|.||||.|++.|+.+++++|++.|++++.++..|.||||.|+..+  .+.+++|+ .|++++.+|. .|+||
T Consensus       182 ~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~--~~~i~~Ll-~~~~in~~d~-~G~Tp  257 (434)
T PHA02874        182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN--RSAIELLI-NNASINDQDI-DGSTP  257 (434)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCC--hHHHHHHH-cCCCCCCcCC-CCCCH
Confidence            99999999999999999999999999999999999999999999999999875  35666666 6899999998 99999


Q ss_pred             HHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Q psy9492         176 LHWAIYAK-NHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  218 (584)
Q Consensus       176 Lh~A~~~g-~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~  218 (584)
                      ||+|+..+ +.+++++|+++|+|++.+|..|+||+++|.+.++.
T Consensus       258 Lh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~  301 (434)
T PHA02874        258 LHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINK  301 (434)
T ss_pred             HHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCc
Confidence            99999976 78999999999999999999999999999988743

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=99.98  E-value=5.8e-32  Score=267.87  Aligned_cols=217  Identities=29%  Similarity=0.475  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHhhheeeeecCCCcccCCc--chhhHHHHHHhhcCCCcCcccccccccccCCCCCcCccCCccccCCc
Q psy9492         336 VSLLFFSTSGVLWYNFIKCWKGDPGVITAPQ--DEKFRYIIELAERGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFD  413 (584)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~D  413 (584)
                      ..+.+.+......+.+++...+|||+.++..  ....+.+.+..+.+.....++|.+|+.+||+|||||+.||+||++||
T Consensus        58 ~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~D  137 (309)
T COG5273          58 FIILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFD  137 (309)
T ss_pred             hhhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchhhccC
Confidence            3455556666777788899999999997432  23334456667778888899999999999999999999999999999


Q ss_pred             ccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy9492         414 HHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQFQLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAI  493 (584)
Q Consensus       414 HhC~w~~ncIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (584)
                      |||||+|||||++|||+|++|+++.....+.+++.+..+.....+...  ..+.+.  ..      .+.....++..+++
T Consensus       138 HHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~------li~~~~~~~~~~f~  207 (309)
T COG5273         138 HHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRH--DTSLAI--CF------LIFGCSLLGVVFFI  207 (309)
T ss_pred             ccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC--ChHHHH--HH------HHHhhhHHHHHHHH
Confidence            999999999999999999999999988887777766666544322111  112220  00      11112233444455


Q ss_pred             HHHHHHHHHHHHHHHcChhHHHHHhhccccccccC---------------CCCCcCCCCChhHHhhHHHHhCccCCCCCC
Q psy9492         494 WITVLLSCQLYQIISLGMTTNERMNANRYHHFIAN---------------PQGQFISPFHRGRLQNFVDFTGWSCFGLFK  558 (584)
Q Consensus       494 ~~~~l~~~q~~~i~~~n~Tt~E~~~~~r~~~~~~~---------------~~~~~~npf~~G~~~N~~~~~g~~~~~~~~  558 (584)
                      .+..++..+.+++. .|+||.|.....|+.+.-+.               +.++...|++.|.-+|+..+++.....|..
T Consensus       208 ~~~~~~~~~~~~~~-~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  286 (309)
T COG5273         208 ITTLLLLFLIYLIL-NNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFDSSEGALPLDLGIGQNLSTIKGSNALYWLT  286 (309)
T ss_pred             HHHHHHHHHHHHHH-hhHHHHHHHHhccceecccccchhccCCcCceeccCCCccccccccCccccceeecCCCceeecc
Confidence            56666677777765 49999998775554322111               023356788888999999998876566655


Q ss_pred             Ccccc
Q psy9492         559 PERID  563 (584)
Q Consensus       559 p~~~~  563 (584)
                      |.+-+
T Consensus       287 ~~~~~  291 (309)
T COG5273         287 PLHTN  291 (309)
T ss_pred             ccccC
Confidence            53333

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=4.1e-31  Score=285.80  Aligned_cols=216  Identities=26%  Similarity=0.373  Sum_probs=202.0

Q ss_pred             hhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC--CHHH
Q psy9492          11 YEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAA--INNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG--HLDS   86 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g--~~~~   86 (584)
                      +......++++.|++.|++++..|..|.||||+|+  ..|+.+++++|+++|++++..+.. |.||||.|+..|  +.++
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~i  158 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD-GENLLHLYLESNKIDLKI  158 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHcCCChHHH
Confidence            44556788999999999999999999999999999  999999999999999999877655 999999999999  9999


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC------CcHHHHHHhhcCC--hhhHHHHH
Q psy9492          87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG------MTALMWSAYKVFS--LDPTRLLI  158 (584)
Q Consensus        87 v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g------~t~Lh~Aa~~~~~--~~~~~~Ll  158 (584)
                      ++.|+++|++++.+|..|.||||.|++.|+.+++++|+++|++++..+..|      .||||+|+..+ +  .+++++|+
T Consensus       159 v~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~iv~~Ll  237 (480)
T PHA03100        159 LKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYN-EITLEVVNYLL  237 (480)
T ss_pred             HHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhC-cCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988      89999999887 7  89999999


Q ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         159 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       159 ~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      +.|+++|.+|. .|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|++.++.+     +++.|.+.+.
T Consensus       238 ~~g~din~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~-----iv~~Ll~~g~  307 (480)
T PHA03100        238 SYGVPINIKDV-YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE-----IFKLLLNNGP  307 (480)
T ss_pred             HcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH-----HHHHHHhcCC
Confidence            99999999998 9999999999999999999999999999999999999999999999888     8888876443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=8e-31  Score=285.79  Aligned_cols=218  Identities=21%  Similarity=0.218  Sum_probs=183.9

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHH
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWA-------------------------------------AINNRIEIMKYFIS   58 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A-------------------------------------~~~~~~~~v~~Ll~   58 (584)
                      ..++++.|+++|+|+|.+|..|.||||.|                                     +..|+.++++.|++
T Consensus       226 ~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe  305 (764)
T PHA02716        226 CASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ  305 (764)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh
Confidence            45899999999999999999999999975                                     44578899999999


Q ss_pred             CCCcccccCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH--------------hCCHHHHHH
Q psy9492          59 QGAIVDAIGGDLQATPLHWATR--QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ--------------FGHTRIVAY  122 (584)
Q Consensus        59 ~g~~~~~~~~~~g~tpLh~A~~--~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~--------------~g~~~~v~~  122 (584)
                      +|++++.++.. |+||||+|+.  .++.+++++|+++|+|++.+|..|.||||.|+.              .++.+++++
T Consensus       306 ~GAdIN~kD~~-G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVkl  384 (764)
T PHA02716        306 PGVKLHYKDSA-GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQC  384 (764)
T ss_pred             CCCceeccCCC-CCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHH
Confidence            99999987655 9999999864  468999999999999999999999999999875              368899999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHH---HhhcCChhhHHHHHhcCC-------------------------------------
Q psy9492         123 LVAKGINVNLQDRNGMTALMWS---AYKVFSLDPTRLLITFGA-------------------------------------  162 (584)
Q Consensus       123 Ll~~g~~~~~~d~~g~t~Lh~A---a~~~~~~~~~~~Ll~~ga-------------------------------------  162 (584)
                      |+++|++++.+|..|.||||.+   +......+++++|++.|+                                     
T Consensus       385 LL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~  464 (764)
T PHA02716        385 LISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLY  464 (764)
T ss_pred             HHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhh
Confidence            9999999999999999999943   223335677777766542                                     


Q ss_pred             ------------------------CcccccCCCCCcHHHHHHHcCCH-----HHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q psy9492         163 ------------------------STTIQDKIHGNVALHWAIYAKNH-----VAITTLVSHTSSLEIPNAQGLTPFMLLE  213 (584)
Q Consensus       163 ------------------------~~~~~d~~~g~TpLh~A~~~g~~-----~~v~~Ll~~gad~~~~n~~g~tpl~lA~  213 (584)
                                              ++|..|. .|+||||+|+..|+.     +++++|+++|||++++|++|+|||++|.
T Consensus       465 ~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~-~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~  543 (764)
T PHA02716        465 TDEYEPYDSTKIHDVYHCAIIERYNNAVCET-SGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTM  543 (764)
T ss_pred             hhhhhhccccccchhhHHHHHhhccccccCC-CCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Confidence                                    2344565 899999999999886     4559999999999999999999999999


Q ss_pred             hcCCCccchHHHHHHHHHHHhc
Q psy9492         214 ENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       214 ~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      ++++.+.....+++.|.+.+..
T Consensus       544 ~~g~~~~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        544 RNNRLSGHQWYIVKNILDKRPN  565 (764)
T ss_pred             HcCCccccHHHHHHHHHhcCCC
Confidence            9998754455588888774443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=9.2e-31  Score=282.39  Aligned_cols=209  Identities=25%  Similarity=0.280  Sum_probs=149.5

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCcccccCCCCCCcHHHHHH--HcCCHHHHHHHHH
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINN-RIEIMKYFISQGAIVDAIGGDLQATPLHWAT--RQGHLDSVVLLIQ   92 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~   92 (584)
                      ..++++.|++.|+|+|.+|..|.||||+|+..| +.+++++|+++|++++..+.. |.||||+|+  ..++.++++.|++
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~-g~tpLh~a~~~~~~~~~iv~~Ll~  140 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKV-GRTPLHVYLSGFNINPKVIRLLLR  140 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCC-CCCHHHHHhhCCcCCHHHHHHHHH
Confidence            678889999999999999999999999999998 599999999999998877655 889999998  5567889999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhc-CChhh----------------
Q psy9492          93 HGADPTLMDSEGSTCIHQAAQFG--HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV-FSLDP----------------  153 (584)
Q Consensus        93 ~gad~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~-~~~~~----------------  153 (584)
                      +|++++.+|..|.||||.|+..+  +.+++++|+++|++++..|..|.||||+|+... ...++                
T Consensus       141 ~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~  220 (471)
T PHA03095        141 KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM  220 (471)
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCC
Confidence            99998888888888888877655  456666666666666555555555555554321 12334                


Q ss_pred             -------------------HHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q psy9492         154 -------------------TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  214 (584)
Q Consensus       154 -------------------~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~  214 (584)
                                         ++.|++.|+++|.+|. .|+||||+|+..|+.++++.|+++|||++.+|.+|.||+++|+.
T Consensus       221 ~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~-~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        221 LGNTPLHSMATGSSCKRSLVLPLLIAGISINARNR-YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             CCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence                               4455555666666664 66666666666666666666666666666666666666666666


Q ss_pred             cCCCccchHHHHHHHHH
Q psy9492         215 NIGAPWLGKATVDKITE  231 (584)
Q Consensus       215 ~~~~~~l~~~~~~~l~~  231 (584)
                      +++.+     +++.+.+
T Consensus       300 ~~~~~-----~v~~LL~  311 (471)
T PHA03095        300 NNNGR-----AVRAALA  311 (471)
T ss_pred             hCCHH-----HHHHHHH
Confidence            66555     5555544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2e-30  Score=276.08  Aligned_cols=199  Identities=27%  Similarity=0.322  Sum_probs=138.6

Q ss_pred             hhHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9492          15 LTKVFVGKCVEA-GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH   93 (584)
Q Consensus        15 ~~~~~l~~ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~   93 (584)
                      ...+.++.+++. +.+++..+.+|.||||.|+..|+.+++++|+++|++++..+.. |.||||.|+..|+.+++++|+++
T Consensus        12 gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~-~~t~L~~A~~~~~~~iv~~Ll~~   90 (434)
T PHA02874         12 GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTK-IPHPLLTAIKIGAHDIIKLLIDN   90 (434)
T ss_pred             CCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHC
Confidence            344566666653 5556666677777777777777777777777777777655443 66777777777777776666655


Q ss_pred             CC-----------------------CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          94 GA-----------------------DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        94 ga-----------------------d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      |+                       +++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +
T Consensus        91 g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~-~  169 (434)
T PHA02874         91 GVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHN-F  169 (434)
T ss_pred             CCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCC-c
Confidence            43                       34556667777777777777777777777777777777777777777777666 5


Q ss_pred             hhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       151 ~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      .+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|++++.++..|.||++.|+..+
T Consensus       170 ~~iv~~Ll~~g~~~n~~~~-~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        170 FDIIKLLLEKGAYANVKDN-NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             HHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCC
Confidence            7777777777777777766 7777777777777777777777777777777777777777766654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.4e-30  Score=281.41  Aligned_cols=208  Identities=16%  Similarity=0.186  Sum_probs=135.8

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHc--CCHHHHHHHH
Q psy9492          17 KVFVGKCVEAGQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ--GHLDSVVLLI   91 (584)
Q Consensus        17 ~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll   91 (584)
                      .++++.|+++|+|+|.+|.+|.||||.|+.+   |+.+++++|+++|++++...+..|.||||+|+..  ++.+++++|+
T Consensus        88 ~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll  167 (494)
T PHA02989         88 KKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL  167 (494)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            4455556666666666666666666655443   4456666666666665222223356666655433  3556666666


Q ss_pred             HCCCCCCC-CCCCCChHHHHHHHhC----CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhc-----CChhhHHHHHhcC
Q psy9492          92 QHGADPTL-MDSEGSTCIHQAAQFG----HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV-----FSLDPTRLLITFG  161 (584)
Q Consensus        92 ~~gad~~~-~d~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~-----~~~~~~~~Ll~~g  161 (584)
                      ++|+|++. .+..|.||||.|++.+    +.+++++|+++|++++.+|..+.||||.++..+     ...+++++|++ |
T Consensus       168 ~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~  246 (494)
T PHA02989        168 SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-Y  246 (494)
T ss_pred             HcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-C
Confidence            66666555 4555666666555443    555666666666666655555566665444322     12344444433 4


Q ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         162 ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       162 a~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +++|.+|. .|+||||+|+..|+.+++++|+++|||++.+|..|.|||++|+..++.+     +++.|.+
T Consensus       247 advn~~d~-~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~-----iv~~LL~  310 (494)
T PHA02989        247 IKINKKDK-KGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNID-----MLNRILQ  310 (494)
T ss_pred             CCCCCCCC-CCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            66667776 8999999999999999999999999999999999999999999999988     8887765

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=274.70  Aligned_cols=215  Identities=19%  Similarity=0.204  Sum_probs=189.3

Q ss_pred             hhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHH
Q psy9492          10 WYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINN--RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV   87 (584)
Q Consensus        10 ~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v   87 (584)
                      .+......++++.|+++|+|+|.+|.+|.||||+|+..+  ..+++++|+++|++++...+..|.|||| |+..|+.+++
T Consensus        78 ~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv  156 (446)
T PHA02946         78 IASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVF  156 (446)
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHH
Confidence            334455789999999999999999999999999999876  4899999999999999765666999998 6777999999


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHHHHhCC--HHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhc-CChhhHHHHHhcCCCc
Q psy9492          88 VLLIQHGADPTLMDSEGSTCIHQAAQFGH--TRIVAYLVAKGINVNLQDRNGMTALMWSAYKV-FSLDPTRLLITFGAST  164 (584)
Q Consensus        88 ~~Ll~~gad~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~-~~~~~~~~Ll~~ga~~  164 (584)
                      +.|++.|++++.+|..|.||||.|+..++  .+++++|+++|++++.+|..|.||||+|+.++ .+.+++++|+. |+++
T Consensus       157 ~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi  235 (446)
T PHA02946        157 KKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV  235 (446)
T ss_pred             HHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC
Confidence            99999999999999999999999887654  68999999999999999999999999999875 36789999885 8999


Q ss_pred             ccccCCCCCcHHHHHHHcCC-HHHHHHHHhcCCCCC--------------------CC-CCCCCCHHHHHHhcCCCccch
Q psy9492         165 TIQDKIHGNVALHWAIYAKN-HVAITTLVSHTSSLE--------------------IP-NAQGLTPFMLLEENIGAPWLG  222 (584)
Q Consensus       165 ~~~d~~~g~TpLh~A~~~g~-~~~v~~Ll~~gad~~--------------------~~-n~~g~tpl~lA~~~~~~~~l~  222 (584)
                      |.+|. .|+||||+|+..++ .++++.|+++|++.+                    .+ +..|+|||++|+++++.+   
T Consensus       236 n~~d~-~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~e---  311 (446)
T PHA02946        236 NKQNK-FGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIR---  311 (446)
T ss_pred             CCCCC-CCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHH---
Confidence            99998 99999999999988 589999999987542                    11 235789999999999999   


Q ss_pred             HHHHHHHHHH
Q psy9492         223 KATVDKITEL  232 (584)
Q Consensus       223 ~~~~~~l~~~  232 (584)
                        +++.|.+.
T Consensus       312 --ivk~Ll~~  319 (446)
T PHA02946        312 --CVKYLLDN  319 (446)
T ss_pred             --HHHHHHHC
Confidence              99999873

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3e-30  Score=278.42  Aligned_cols=204  Identities=26%  Similarity=0.267  Sum_probs=178.1

Q ss_pred             hhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC-CHHHHH
Q psy9492          13 FELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG-HLDSVV   88 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g-~~~~v~   88 (584)
                      .+...++++.|+++|+|+|..|..|.||||.|+..+   +.++++.|+++|+++|..+. .|.||||+|+..| +.++++
T Consensus        23 ~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~-~g~TpLh~A~~~~~~~~iv~  101 (471)
T PHA03095         23 SNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER-CGFTPLHLYLYNATTLDVIK  101 (471)
T ss_pred             CCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCcHHHHH
Confidence            445778999999999999999999999999999998   99999999999999998876 4999999999999 599999


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHH--HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhc-CChhhHHHHHhcCCCcc
Q psy9492          89 LLIQHGADPTLMDSEGSTCIHQAA--QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV-FSLDPTRLLITFGASTT  165 (584)
Q Consensus        89 ~Ll~~gad~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~-~~~~~~~~Ll~~ga~~~  165 (584)
                      +|+++|++++.+|..|.||||.|+  ..++.+++++|+++|++++.+|..|.||||+|+..+ ...+++++|++.|++++
T Consensus       102 lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~  181 (471)
T PHA03095        102 LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY  181 (471)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc
Confidence            999999999999999999999999  556899999999999999999999999999988654 25789999999999998


Q ss_pred             cccCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Q psy9492         166 IQDKIHGNVALHWAIYA--KNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  218 (584)
Q Consensus       166 ~~d~~~g~TpLh~A~~~--g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~  218 (584)
                      ..|. .|+||||.|+..  ++.++++.|+++|+|++.+|..|.||||+|+..++.
T Consensus       182 ~~d~-~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~  235 (471)
T PHA03095        182 AVDD-RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSC  235 (471)
T ss_pred             ccCC-CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCc
Confidence            8876 888888888764  567777777777777666666666666666665543

>KOG1313|consensus

Probab=99.97  E-value=5.7e-31  Score=242.07  Aligned_cols=162  Identities=27%  Similarity=0.491  Sum_probs=119.0

Q ss_pred             CcccccccccccCCCCCcCccCCccccCCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Q psy9492         384 PLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKYWKSKCQF----  459 (584)
Q Consensus       384 ~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DHhC~w~~ncIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~----  459 (584)
                      ...+|.+|..+||||+|||+.||+||+++||||||+|||||+.|||+|++|++++.+++.+..++....|......    
T Consensus       101 ~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~  180 (309)
T KOG1313|consen  101 NDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEI  180 (309)
T ss_pred             cccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhc
Confidence            4478999999999999999999999999999999999999999999999999999999999988877777654211    


Q ss_pred             -ccchh-------hHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHhhccc--cccccCC
Q psy9492         460 -QLSHE-------REVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANRY--HHFIANP  529 (584)
Q Consensus       460 -~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~~i~~~n~Tt~E~~~~~r~--~~~~~~~  529 (584)
                       .+..+       ..+......+.  ...+....+++....+.++.+..++.+.| .+|.|.+|.....+-  ++..   
T Consensus       181 tay~~d~~h~~Pp~~i~r~~~~i~--~t~~~~~~fls~~~lv~vg~l~~W~~vlI-~~G~tsi~~~~~~~e~k~~~a---  254 (309)
T KOG1313|consen  181 TAYASDVAHVAPPPSILRVYKNIT--RTSIANLWFLSVRVLVAVGLLTAWHAVLI-SRGETSIEQLINIKERKRYLA---  254 (309)
T ss_pred             ccccCcccccCCChhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhheee-ehhhhhHHHHHHHHHhHhHHH---
Confidence             11100       00110000010  11123355566667778888888998876 469999998763321  1222   


Q ss_pred             CCCcCCCCChhHHhhHHHHhCcc
Q psy9492         530 QGQFISPFHRGRLQNFVDFTGWS  552 (584)
Q Consensus       530 ~~~~~npf~~G~~~N~~~~~g~~  552 (584)
                       ....||++.|.+.||+.|+|..
T Consensus       255 -~~R~~~~n~g~k~nWr~fLg~~  276 (309)
T KOG1313|consen  255 -HLRSNPTNFGGKANWRNFLGLF  276 (309)
T ss_pred             -hccCCCcccchHHHHHHhhccc
Confidence             2237999999999999999953

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1e-29  Score=269.34  Aligned_cols=204  Identities=20%  Similarity=0.209  Sum_probs=188.7

Q ss_pred             hhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          12 EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        12 ~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      ......++++.|++.|++++..+.++.||||.|+..|+.++++.|++.|++.+...+..|.||||+|+..|+.++++.|+
T Consensus        43 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll  122 (413)
T PHA02875         43 MKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLI  122 (413)
T ss_pred             HHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHH
Confidence            34457789999999999999999999999999999999999999999998877655556999999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCC
Q psy9492          92 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH  171 (584)
Q Consensus        92 ~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~  171 (584)
                      ++|+|++.++..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..+...
T Consensus       123 ~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g-~~eiv~~Ll~~ga~~n~~~~~~  201 (413)
T PHA02875        123 ARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG-DIAICKMLLDSGANIDYFGKNG  201 (413)
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999998 8999999999999999999833


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCC---CCCCCCHHHHHHhcC
Q psy9492         172 GNVALHWAIYAKNHVAITTLVSHTSSLEIP---NAQGLTPFMLLEENI  216 (584)
Q Consensus       172 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~---n~~g~tpl~lA~~~~  216 (584)
                      +.||+|+|+..|+.+++++|+++|+|++..   +.++.||++++....
T Consensus       202 ~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        202 CVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhc
Confidence            468999999999999999999999999865   678899999887543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.9e-29  Score=271.83  Aligned_cols=210  Identities=22%  Similarity=0.279  Sum_probs=177.1

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHH----------
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD----------   85 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~----------   85 (584)
                      ..++++.+-+.+...+..+..+.||||.|+..|+.+++++|+++|++++..+.. |.||||+||..|+.+          
T Consensus        16 i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~~~   94 (477)
T PHA02878         16 ILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHR-DLTPLHIICKEPNKLGMKEMIRSIN   94 (477)
T ss_pred             HHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHCccHhHHHHHHHHHh
Confidence            344444443334344555678899999999999999999999999999987655 999999999875432          


Q ss_pred             ------------------------------------------------------HHHHHHHCCCCCCCCCCC-CChHHHH
Q psy9492          86 ------------------------------------------------------SVVLLIQHGADPTLMDSE-GSTCIHQ  110 (584)
Q Consensus        86 ------------------------------------------------------~v~~Ll~~gad~~~~d~~-g~t~L~~  110 (584)
                                                                            ++++|+++|++++.+|.. |.||||.
T Consensus        95 ~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~  174 (477)
T PHA02878         95 KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHY  174 (477)
T ss_pred             ccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHH
Confidence                                                                  667778889999999888 9999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHH
Q psy9492         111 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA-KNHVAIT  189 (584)
Q Consensus       111 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~-g~~~~v~  189 (584)
                      |+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|++.|++++.+|. .|+||||+|+.. ++.++++
T Consensus       175 A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~-~~~iv~~Ll~~ga~in~~d~-~g~TpLh~A~~~~~~~~iv~  252 (477)
T PHA02878        175 ATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY-NKPIVHILLENGASTDARDK-CGNTPLHISVGYCKDYDILK  252 (477)
T ss_pred             HHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC-CHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999887 79999999999999999998 999999999976 6899999


Q ss_pred             HHHhcCCCCCCCCC-CCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         190 TLVSHTSSLEIPNA-QGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       190 ~Ll~~gad~~~~n~-~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      +|+++|+|++.++. .|.|||++|.  ++.+     +++.|.+.++.
T Consensus       253 ~Ll~~gadvn~~~~~~g~TpLh~A~--~~~~-----~v~~Ll~~gad  292 (477)
T PHA02878        253 LLLEHGVDVNAKSYILGLTALHSSI--KSER-----KLKLLLEYGAD  292 (477)
T ss_pred             HHHHcCCCCCccCCCCCCCHHHHHc--cCHH-----HHHHHHHCCCC
Confidence            99999999999886 7999999993  4444     67777765443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.6e-29  Score=281.20  Aligned_cols=213  Identities=23%  Similarity=0.300  Sum_probs=192.2

Q ss_pred             hhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH---
Q psy9492          15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI---   91 (584)
Q Consensus        15 ~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll---   91 (584)
                      ...++++.|++.|+|+|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||.|+..|+.++++.|+   
T Consensus       156 ~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~-g~t~L~~A~~~~~~~ivk~Ll~~~  234 (682)
T PHA02876        156 DELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD-DLSVLECAVDSKNIDTIKAIIDNR  234 (682)
T ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCC-CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            3567899999999999999999999999999999999999999999999887655 899999999998887776554   


Q ss_pred             --------------------------HCCCCCCCCCCCCChHHHHHHHhCCH-HHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy9492          92 --------------------------QHGADPTLMDSEGSTCIHQAAQFGHT-RIVAYLVAKGINVNLQDRNGMTALMWS  144 (584)
Q Consensus        92 --------------------------~~gad~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~d~~g~t~Lh~A  144 (584)
                                                +.|++++..|..|.||||.|++.++. +++++|++.|++++.+|..|.||||+|
T Consensus       235 ~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~A  314 (682)
T PHA02876        235 SNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLM  314 (682)
T ss_pred             CCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence                                      45667888888999999999999986 589999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchH
Q psy9492         145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA-KNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGK  223 (584)
Q Consensus       145 a~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~  223 (584)
                      +..|...+.+++|+..|++++..|. .|.||||+|+.. ++.++++.|+++|+|++.+|..|.|||++|+..++.+    
T Consensus       315 a~~g~~~~~v~~Ll~~gadin~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~----  389 (682)
T PHA02876        315 AKNGYDTENIRTLIMLGADVNAADR-LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVV----  389 (682)
T ss_pred             HHhCCCHHHHHHHHHcCCCCCCccc-CCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHH----
Confidence            9998778999999999999999998 999999999985 4788999999999999999999999999999999988    


Q ss_pred             HHHHHHHHHHh
Q psy9492         224 ATVDKITELKD  234 (584)
Q Consensus       224 ~~~~~l~~~~~  234 (584)
                       +++.|.+.+.
T Consensus       390 -iv~~Ll~~ga  399 (682)
T PHA02876        390 -IINTLLDYGA  399 (682)
T ss_pred             -HHHHHHHCCC
Confidence             8888876443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.5e-29  Score=281.26  Aligned_cols=196  Identities=27%  Similarity=0.273  Sum_probs=130.5

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCcccccCCCCCCcHHHHHHHc-CCHHHHHHHHHCCC
Q psy9492          18 VFVGKCVEAGQDVNEPDSETVTLLHWAAINN-RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ-GHLDSVVLLIQHGA   95 (584)
Q Consensus        18 ~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~ga   95 (584)
                      ++++.|++.|++++.+|.+|.||||+|+.+| +.++++.|++.|++++..+.. |.||||+|+.. ++.++++.|++.|+
T Consensus       288 ~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~-g~TpLh~A~~~~~~~~iv~lLl~~ga  366 (682)
T PHA02876        288 RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL-YITPLHQASTLDRNKDIVITLLELGA  366 (682)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC-CCcHHHHHHHhCCcHHHHHHHHHcCC
Confidence            4566666666666666666666666666666 466666666666666655433 66666666653 35666666666677


Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcH
Q psy9492          96 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA  175 (584)
Q Consensus        96 d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~Tp  175 (584)
                      +++.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+....++++|++.|+++|.+|. .|+||
T Consensus       367 din~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~-~G~Tp  445 (682)
T PHA02876        367 NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK-DLSTP  445 (682)
T ss_pred             CCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCC-CCChH
Confidence            77666666777777777777777777777777776666666667777666555445566667777777776666 67777


Q ss_pred             HHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q psy9492         176 LHWAIYAK-NHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN  215 (584)
Q Consensus       176 Lh~A~~~g-~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~  215 (584)
                      ||+|+..| +.+++++|+++|+|++.+|..|.||+++|..+
T Consensus       446 Lh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        446 LHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             HHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence            77776655 46677777777777777777777777766654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.7e-29  Score=237.74  Aligned_cols=177  Identities=20%  Similarity=0.263  Sum_probs=158.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCChHHHHH
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG--HLDSVVLLIQHGADPTLMD-SEGSTCIHQA  111 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~gad~~~~d-~~g~t~L~~A  111 (584)
                      +.+.||||.|+..|+.++++.|++.+   +..+ ..|.||||+|+..+  +.+++++|+++|+|++.++ ..|.||||.|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~---n~~~-~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV---NDCN-DLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh---hccC-ccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            56789999999999999999999863   3333 44999999999855  8999999999999999997 5899999998


Q ss_pred             HHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhh-cCChhhHHHHHhcCCCcccccCCCCCcHHHH-HHHcCCHH
Q psy9492         112 AQF---GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK-VFSLDPTRLLITFGASTTIQDKIHGNVALHW-AIYAKNHV  186 (584)
Q Consensus       112 ~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~-~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~-A~~~g~~~  186 (584)
                      +..   ++.+++++|+++|++++.+|..|.||||+|+.. ..+.+++++|++.|++++..|. .|+||||. |+..++.+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~-~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF-DNNNILYSYILFHSDKK  173 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC-CCCcHHHHHHHhcCCHH
Confidence            754   479999999999999999999999999998753 2378999999999999999998 99999996 56688999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         187 AITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       187 ~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      ++++|+++|+|++.+|..|+||+++|..++
T Consensus       174 iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        174 IFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999999999999999999999999998764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.8e-29  Score=269.55  Aligned_cols=214  Identities=22%  Similarity=0.290  Sum_probs=173.7

Q ss_pred             hhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC------CHH
Q psy9492          14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAIN--NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG------HLD   85 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g------~~~   85 (584)
                      ....++++.|+++|+|+|.. .+|.||||.++..  ++.+++++|+++|+++|..+  .+.||||.|+..+      +.+
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~--~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG--YIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC--CCCCcHHHHHhccCcchhhHHH
Confidence            46788899999999999988 5788888776654  36899999999999998764  3689999887654      467


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHh---CCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHhhc-CChhhHHHHHhc
Q psy9492          86 SVVLLIQHGADPTLMDSEGSTCIHQAAQF---GHTRIVAYLVAKGINV-NLQDRNGMTALMWSAYKV-FSLDPTRLLITF  160 (584)
Q Consensus        86 ~v~~Ll~~gad~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~d~~g~t~Lh~Aa~~~-~~~~~~~~Ll~~  160 (584)
                      ++++|+++|+|++.+|..|.||||.|+..   ++.+++++|+++|+|+ +.+|..|.||||+|+..+ .+.+++++|+++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            89999999999999999999999987755   5788999999999999 788899999999886542 367899999999


Q ss_pred             CCCccc-ccCCCCCcHHHHHHHcC----CHHHHHHHHhcCCCCC------------------------------------
Q psy9492         161 GASTTI-QDKIHGNVALHWAIYAK----NHVAITTLVSHTSSLE------------------------------------  199 (584)
Q Consensus       161 ga~~~~-~d~~~g~TpLh~A~~~g----~~~~v~~Ll~~gad~~------------------------------------  199 (584)
                      |++++. .+. .|.||||.|+..+    +.+++++|+++|+|++                                    
T Consensus       170 Gadi~~~~~~-~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~ad  248 (494)
T PHA02989        170 GVNLFEKTSL-YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIK  248 (494)
T ss_pred             CCCccccccc-cCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCC
Confidence            999988 454 8999999887754    7888888888887655                                    


Q ss_pred             --CCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhcc
Q psy9492         200 --IPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHY  236 (584)
Q Consensus       200 --~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~  236 (584)
                        .+|..|.|||++|+..++.+     +++.|.+.++..
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~-----~v~~LL~~Gadi  282 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYE-----AFNYLLKLGDDI  282 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHH-----HHHHHHHcCCCc
Confidence              44566899999999988888     888887755443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.2e-28  Score=264.55  Aligned_cols=213  Identities=15%  Similarity=0.119  Sum_probs=179.0

Q ss_pred             hhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHH----
Q psy9492          13 FELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD----   85 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~----   85 (584)
                      .+..-+.++.++..|.+++..|.+|.||||+|+.+   |+.+++++|++.|++++..+.. |.||||+|+..|+.+    
T Consensus         8 ~~~~~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~-g~TpL~~Aa~~g~~~v~~~   86 (661)
T PHA02917          8 EEVALDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWR-QLTPLEEYTNSRHVKVNKD   86 (661)
T ss_pred             hHHHHHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCC-CCCHHHHHHHcCChhHHHH
Confidence            45566777888889999999999999999998665   8899999999999999977654 999999999999854    


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH-hhcCChhhHHHHHhcCCCc
Q psy9492          86 SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA-YKVFSLDPTRLLITFGAST  164 (584)
Q Consensus        86 ~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa-~~~~~~~~~~~Ll~~ga~~  164 (584)
                      +++.|++.+.+.+..|.  .++++.|+..++.+++++|+++|+|++.+|..|+||||.|+ .+..+.+++++|++.|+++
T Consensus        87 ~~~~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917         87 IAMALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             HHHHHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence            56788887654444332  36778899999999999999999999999999999999654 3344899999999999999


Q ss_pred             ccccC--CCC-----------CcHHHHHHH-----------cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCcc
Q psy9492         165 TIQDK--IHG-----------NVALHWAIY-----------AKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPW  220 (584)
Q Consensus       165 ~~~d~--~~g-----------~TpLh~A~~-----------~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~  220 (584)
                      |..|.  ..|           .||||+|+.           .++.+++++|+++|||++.+|.+|.||||+|+..++.+ 
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~-  243 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHID-  243 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCc-
Confidence            86553  134           599999986           46899999999999999999999999999999999863 


Q ss_pred             chHHHHHHHHH
Q psy9492         221 LGKATVDKITE  231 (584)
Q Consensus       221 l~~~~~~~l~~  231 (584)
                        ..+++.|.+
T Consensus       244 --~eivk~Li~  252 (661)
T PHA02917        244 --IDIVKLLMK  252 (661)
T ss_pred             --HHHHHHHHh
Confidence              127777754

>KOG0510|consensus

Probab=99.96  E-value=2e-28  Score=255.75  Aligned_cols=210  Identities=24%  Similarity=0.313  Sum_probs=172.6

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHH---
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ---   92 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~---   92 (584)
                      .-+.++.|++.|+|+|..|+.|.||||.||..++.|..+.|++.|+++-..+.+ |.+|+|.|++.|+.++.+..+.   
T Consensus       133 ~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~-~~~~iH~aa~s~s~e~mEi~l~~~g  211 (929)
T KOG0510|consen  133 NYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDID-GNFPIHEAARSGSKECMEIFLPEHG  211 (929)
T ss_pred             hHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCc-CCchHHHHHHhcchhhhhhhhcccc
Confidence            445677777778888888888888888888888888777888888887655444 7788888888888888888777   


Q ss_pred             --CCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC---------------CCCCCCCCCcHHHHHHhhcCChhhHH
Q psy9492          93 --HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN---------------VNLQDRNGMTALMWSAYKVFSLDPTR  155 (584)
Q Consensus        93 --~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~d~~g~t~Lh~Aa~~~~~~~~~~  155 (584)
                        .+.+++.-|..|.||||.|++.|+.++++..++.|..               ++..|++|.||||+|+.+| ..++++
T Consensus       212 ~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G-~~~svd  290 (929)
T KOG0510|consen  212 YERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQG-GPESVD  290 (929)
T ss_pred             chhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcC-ChhHHH
Confidence              5677777788888888888888888888888887532               3457889999999999988 789999


Q ss_pred             HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh-cC-CCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHH
Q psy9492         156 LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS-HT-SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELK  233 (584)
Q Consensus       156 ~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~-~g-ad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~  233 (584)
                      .|+..|++++..+. ++.||||.||..|+.++|+.||+ .| ...+..|..|.||+|+|++.|+..     +++.|.+.+
T Consensus       291 ~Ll~~Ga~I~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~-----v~qlLl~~G  364 (929)
T KOG0510|consen  291 NLLGFGASINSKNK-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDR-----VVQLLLNKG  364 (929)
T ss_pred             HHHHcCCcccccCC-CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHH-----HHHHHHhcC
Confidence            99999999999987 99999999999999999999998 44 567888999999999999888888     888888733

>KOG0510|consensus

Probab=99.96  E-value=3.2e-28  Score=254.18  Aligned_cols=215  Identities=20%  Similarity=0.265  Sum_probs=190.6

Q ss_pred             hhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-----CCCcccccCCCCCCcHHHHHHHcCCHHHHH
Q psy9492          14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS-----QGAIVDAIGGDLQATPLHWATRQGHLDSVV   88 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~   88 (584)
                      ....|..+.|++.|+|+...|.+|++|+|.|+..|..|+.+..+.     ++..+|..+++ |.||||.|+..|++++++
T Consensus       164 ~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~-~~~pLhlAve~g~~e~lk  242 (929)
T KOG0510|consen  164 KNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNE-KATPLHLAVEGGDIEMLK  242 (929)
T ss_pred             cChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCC-CCcchhhhhhcCCHHHHH
Confidence            335566788899999999999999999999999999999999998     56677766555 899999999999999999


Q ss_pred             HHHHCCCC---------------CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhh
Q psy9492          89 LLIQHGAD---------------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP  153 (584)
Q Consensus        89 ~Ll~~gad---------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~  153 (584)
                      .+++.|+.               ++..|.+|.||||+|++.|+.+++..|+..|++++.++.++.||||.||..| +.++
T Consensus       243 ~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg-~~nt  321 (929)
T KOG0510|consen  243 MCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYG-RINT  321 (929)
T ss_pred             HHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcc-cHHH
Confidence            99998743               3456889999999999999999999999999999999999999999999998 8999


Q ss_pred             HHHHHh-cC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC---CCCCCCCCHHHHHHhcCCCccchHHHHHH
Q psy9492         154 TRLLIT-FG-ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE---IPNAQGLTPFMLLEENIGAPWLGKATVDK  228 (584)
Q Consensus       154 ~~~Ll~-~g-a~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~---~~n~~g~tpl~lA~~~~~~~~l~~~~~~~  228 (584)
                      ++-|++ .| ...|..|- .|.||||.|+++|+..+++.|++.||+..   ..|.+|.||||+|+.+|+..     .++.
T Consensus       322 v~rLL~~~~~rllne~D~-~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~-----av~~  395 (929)
T KOG0510|consen  322 VERLLQESDTRLLNESDL-HGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTS-----AVQK  395 (929)
T ss_pred             HHHHHhCcCccccccccc-cCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHH-----HHHH
Confidence            998888 44 35577776 99999999999999999999999999887   56999999999999999999     8999


Q ss_pred             HHHHHhcc
Q psy9492         229 ITELKDHY  236 (584)
Q Consensus       229 l~~~~~~~  236 (584)
                      |...+...
T Consensus       396 Li~~Ga~I  403 (929)
T KOG0510|consen  396 LISHGADI  403 (929)
T ss_pred             HHHcCCce
Confidence            88866554

>KOG0508|consensus

Probab=99.95  E-value=1.7e-28  Score=241.56  Aligned_cols=189  Identities=29%  Similarity=0.398  Sum_probs=172.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-CCCcccccC-------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy9492          34 DSETVTLLHWAAINNRIEIMKYFIS-QGAIVDAIG-------GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS  105 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~-------~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~  105 (584)
                      +.+|.|||-+||.+|+.++|++|++ .++++...+       .-.|.+||-.|+..||+++|+.|+++|+++|....-..
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNS  118 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNS  118 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCC
Confidence            4677899999999999999999998 466654332       12478999999999999999999999999999888888


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q psy9492         106 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  185 (584)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~  185 (584)
                      |||-.||.-|+.++++||+++|+|++..|+.|+|.||+||++| +.+++++|++.|+|+|..+. .|+|+||.|+..|+.
T Consensus       119 tPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykG-h~~I~qyLle~gADvn~ks~-kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKG-HVDIAQYLLEQGADVNAKSY-KGNTALHDCAESGSV  196 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccC-chHHHHHHHHhCCCcchhcc-cCchHHHhhhhcccH
Confidence            9999999999999999999999999999999999999999999 89999999999999999998 999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHH
Q psy9492         186 VAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT  230 (584)
Q Consensus       186 ~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~  230 (584)
                      +++++|+.+|+.++. |..|.|||..|...|+.+     +++.|.
T Consensus       197 divq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~-----iVe~L~  235 (615)
T KOG0508|consen  197 DIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTD-----IVERLL  235 (615)
T ss_pred             HHHHHHHhCCceeee-cCCCCchHHHHhhhcchH-----HHHHHh
Confidence            999999999998875 445999999999999999     666665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=245.22  Aligned_cols=205  Identities=14%  Similarity=0.084  Sum_probs=177.7

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCccc------ccCCCCCCcHHHHHHH--cCCHHHHH
Q psy9492          17 KVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVD------AIGGDLQATPLHWATR--QGHLDSVV   88 (584)
Q Consensus        17 ~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~------~~~~~~g~tpLh~A~~--~g~~~~v~   88 (584)
                      ...-+.++++|+++|+.+.+|     .|+..+..|++++|+.+|++++      ..+ ..++|+||.|+.  .|+.++++
T Consensus        62 ~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~-~~~~~~L~~~~~n~~n~~eiV~  135 (437)
T PHA02795         62 DVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNC-NSVQDLLLYYLSNAYVEIDIVD  135 (437)
T ss_pred             HHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhcc-ccccHHHHHHHHhcCCCHHHHH
Confidence            344567789999999998888     9999999999999999999988      544 448999999999  89999999


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCC-CC-----CCCCCcHHHHHHhhcCChhhHHHHHhcCC
Q psy9492          89 LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-LQ-----DRNGMTALMWSAYKVFSLDPTRLLITFGA  162 (584)
Q Consensus        89 ~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~-----d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga  162 (584)
                      +|+++|||++..  .+.||+|.|+..++.+++++|+++|++.+ ..     +..+.|++|.|+..+ ..+++++|+++|+
T Consensus       136 ~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~-~~eIve~LIs~GA  212 (437)
T PHA02795        136 FMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT-VLEIYKLCIPYIE  212 (437)
T ss_pred             HHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC-HHHHHHHHHhCcC
Confidence            999999999875  45899999999999999999999998533 22     234788999988777 7999999999999


Q ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccc---hHHHHHHHHH
Q psy9492         163 STTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL---GKATVDKITE  231 (584)
Q Consensus       163 ~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l---~~~~~~~l~~  231 (584)
                      ++|.+|. .|.||||+|+..|+.+++++|+++|||++.+|..|.|||++|+..++....   ...+++.|.+
T Consensus       213 DIN~kD~-~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~  283 (437)
T PHA02795        213 DINQLDA-GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR  283 (437)
T ss_pred             CcCcCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence            9999998 999999999999999999999999999999999999999999998853100   1236777655

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.3e-27  Score=253.92  Aligned_cols=221  Identities=14%  Similarity=0.122  Sum_probs=182.8

Q ss_pred             cchhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHH---------------------------
Q psy9492           8 KNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHW--AAINNRIEIMKYFIS---------------------------   58 (584)
Q Consensus         8 ~~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~--A~~~~~~~~v~~Ll~---------------------------   58 (584)
                      ++..+.+...++++.|+++|+|+|.+|.+|.||||.  |+..++.|++++|++                           
T Consensus       206 ~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (672)
T PHA02730        206 SHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKR  285 (672)
T ss_pred             hhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhh
Confidence            444467779999999999999999999999999995  555677999999999                           


Q ss_pred             -----CCCcccc-------------------cCCCCCCc---------------------HHHHHHHcC---CHHHHHHH
Q psy9492          59 -----QGAIVDA-------------------IGGDLQAT---------------------PLHWATRQG---HLDSVVLL   90 (584)
Q Consensus        59 -----~g~~~~~-------------------~~~~~g~t---------------------pLh~A~~~g---~~~~v~~L   90 (584)
                           +|++...                   ..+..|.+                     .||.-...+   +.+++++|
T Consensus       286 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelL  365 (672)
T PHA02730        286 FRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCM  365 (672)
T ss_pred             hhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHH
Confidence                 6777643                   01222433                     566666655   68999999


Q ss_pred             HHCCCCCCCCCCCCChHHHHHHHhCC----HHHHHHHHHCCC--CCCCCCCCCCcHHHH---HHhhcC--------Chhh
Q psy9492          91 IQHGADPTLMDSEGSTCIHQAAQFGH----TRIVAYLVAKGI--NVNLQDRNGMTALMW---SAYKVF--------SLDP  153 (584)
Q Consensus        91 l~~gad~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~--~~~~~d~~g~t~Lh~---Aa~~~~--------~~~~  153 (584)
                      +++|||++.. ..|.||||.|+..++    .+++++|+++|+  +++.+|..|.||||.   |...+.        ..++
T Consensus       366 Is~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~i  444 (672)
T PHA02730        366 LDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDV  444 (672)
T ss_pred             HHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHH
Confidence            9999999985 789999999998875    899999999987  689999999999984   332221        1256


Q ss_pred             HHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHhc--CCCccchHHHHHHHH
Q psy9492         154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA-QGLTPFMLLEEN--IGAPWLGKATVDKIT  230 (584)
Q Consensus       154 ~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~-~g~tpl~lA~~~--~~~~~l~~~~~~~l~  230 (584)
                      +++|+.+|+++|..|. .|.||||+|+..++.+++++|+++|||++.+|. .|.||++.|+..  ++.+     +++.|.
T Consensus       445 vk~LIs~GADINakD~-~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~e-----Iv~~LL  518 (672)
T PHA02730        445 FDILSKYMDDIDMIDN-ENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTK-----LVDLLL  518 (672)
T ss_pred             HHHHHhcccchhccCC-CCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHH-----HHHHHH
Confidence            8999999999999998 999999999999999999999999999999997 599999999874  4555     788876


Q ss_pred             HHHhc
Q psy9492         231 ELKDH  235 (584)
Q Consensus       231 ~~~~~  235 (584)
                      +.+..
T Consensus       519 s~ga~  523 (672)
T PHA02730        519 SYHPT  523 (672)
T ss_pred             HcCCC
Confidence            64443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.5e-27  Score=244.28  Aligned_cols=185  Identities=15%  Similarity=0.113  Sum_probs=168.6

Q ss_pred             hhhhHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCH
Q psy9492          13 FELTKVFVGKCVEAGQDVN------EPDSETVTLLHWAAI--NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL   84 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n------~~d~~g~t~Lh~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~   84 (584)
                      ....++++|.|+++|+++|      ..+..++|+||.|+.  .|+.+++++|+++|++++..+   +.||||.|+..|+.
T Consensus        86 ~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~---~~t~lh~A~~~~~~  162 (437)
T PHA02795         86 YITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE---CLNAYFRGICKKES  162 (437)
T ss_pred             hcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC---CCCHHHHHHHcCcH
Confidence            4457899999999999999      888899999999999  899999999999999998742   57999999999999


Q ss_pred             HHHHHHHHCCCCCCCCC------CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHH
Q psy9492          85 DSVVLLIQHGADPTLMD------SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI  158 (584)
Q Consensus        85 ~~v~~Ll~~gad~~~~d------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll  158 (584)
                      +++++|+++|++.....      ..+.+++|.|+..++.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+
T Consensus       163 eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g-~~eiVelLL  241 (437)
T PHA02795        163 SVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAG-YIDLVSWLL  241 (437)
T ss_pred             HHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcC-CHHHHHHHH
Confidence            99999999998543222      34789999999999999999999999999999999999999999988 899999999


Q ss_pred             hcCCCcccccCCCCCcHHHHHHHcCC--------HHHHHHHHhcCCCCCCCC
Q psy9492         159 TFGASTTIQDKIHGNVALHWAIYAKN--------HVAITTLVSHTSSLEIPN  202 (584)
Q Consensus       159 ~~ga~~~~~d~~~g~TpLh~A~~~g~--------~~~v~~Ll~~gad~~~~n  202 (584)
                      +.|+++|.+|. .|.||||+|+..|+        .+++++|+++|++++..+
T Consensus       242 ~~GAdIN~~d~-~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        242 ENGANVNAVMS-NGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             HCCCCCCCcCC-CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            99999999998 99999999999984        689999999999998644

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.2e-27  Score=254.99  Aligned_cols=185  Identities=21%  Similarity=0.295  Sum_probs=166.9

Q ss_pred             hhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCC---HHHH
Q psy9492          14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH---LDSV   87 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~---~~~v   87 (584)
                      ....++++.|+++|+|+|.+|.+|.||||+|+.++   +.+++++|+++|++++..+.. |.||||+|++.|+   .+++
T Consensus        86 ~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~-g~tpL~~a~~~~~~~~~~vv  164 (489)
T PHA02798         86 KHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKD-GFTMLQVYLQSNHHIDIEII  164 (489)
T ss_pred             HhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCC-CCcHHHHHHHcCCcchHHHH
Confidence            34578999999999999999999999999999985   789999999999999987765 9999999999998   9999


Q ss_pred             HHHHHCCCCCCCCC-CCCChHHHHHHHh----CCHHHHHHHHHCCCC---------------------------------
Q psy9492          88 VLLIQHGADPTLMD-SEGSTCIHQAAQF----GHTRIVAYLVAKGIN---------------------------------  129 (584)
Q Consensus        88 ~~Ll~~gad~~~~d-~~g~t~L~~A~~~----g~~~~v~~Ll~~g~~---------------------------------  129 (584)
                      ++|+++|+|++.++ ..|.||+|.+++.    ++.+++++|+++|++                                 
T Consensus       165 ~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~  244 (489)
T PHA02798        165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDF  244 (489)
T ss_pred             HHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHH
Confidence            99999999999875 5789999998765    368888888877754                                 


Q ss_pred             ------CCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q psy9492         130 ------VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP  201 (584)
Q Consensus       130 ------~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~  201 (584)
                            +|.+|..|.||||+|+..| +.+++++|++.|+++|.+|. .|+||||.|+..|+.++++.|+++|++++..
T Consensus       245 l~~~~dvN~~d~~G~TPL~~A~~~~-~~~~v~~LL~~GAdin~~d~-~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        245 IFSYIDINQVDELGFNPLYYSVSHN-NRKIFEYLLQLGGDINIITE-LGNTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             HHhcCCCCCcCcCCccHHHHHHHcC-cHHHHHHHHHcCCcccccCC-CCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence                  4556778999999999888 89999999999999999998 9999999999999999999999999988743

>KOG1312|consensus

Probab=99.95  E-value=3.4e-29  Score=231.32  Aligned_cols=105  Identities=40%  Similarity=0.774  Sum_probs=80.3

Q ss_pred             HHHHHHhhheeeeecCCCcccCCcchhhHHHHHHhh-cCCCcCcccccccccccCCCCCcCccCCccccCCccccccccc
Q psy9492         343 TSGVLWYNFIKCWKGDPGVITAPQDEKFRYIIELAE-RGTFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGN  421 (584)
Q Consensus       343 ~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DHhC~w~~n  421 (584)
                      ..++-.+.+..++.+|||.+....+...  +.+.+- ...+.+...|.||+++||.|||||+.||+||.||||||.|+||
T Consensus       107 ~vivp~i~f~ltc~snpg~i~k~n~s~~--~~~ypYDy~if~k~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNN  184 (341)
T KOG1312|consen  107 LVIVPLIFFTLTCGSNPGIITKANESLF--LHVYPYDYVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINN  184 (341)
T ss_pred             HHHHHHHHHhhhhcCCCCccchhhhccc--eeccCccceeecCCCccccccCCCccccccchHHHHHHHHhccceEeeec
Confidence            3344455677889999999976544322  111111 1123455789999999999999999999999999999999999


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9492         422 CIGAKNHKYFVGYISSLLFMCCFVLYGI  449 (584)
Q Consensus       422 cIG~~N~~~F~~fl~~~~~~~~~~~~~~  449 (584)
                      |||++|.|+|++|+++...++.+.+...
T Consensus       185 CIG~~N~ryF~lFLL~~i~l~~yaivrl  212 (341)
T KOG1312|consen  185 CIGAWNIRYFLLFLLTLISLATYAIVRL  212 (341)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999966666555443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.4e-26  Score=218.04  Aligned_cols=172  Identities=18%  Similarity=0.165  Sum_probs=150.6

Q ss_pred             cchhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCcccccCCCCCCcHHHHHHHc---C
Q psy9492           8 KNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINN--RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ---G   82 (584)
Q Consensus         8 ~~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~---g   82 (584)
                      ..++......+.++.|++.   +|..|..|.||||.|+.++  +.+++++|+++|++++.+++..|.||||+|+..   +
T Consensus        25 L~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~  101 (209)
T PHA02859         25 LFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNV  101 (209)
T ss_pred             HHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccc
Confidence            3344455677888888875   5677899999999999865  899999999999999988755699999998764   4


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHh--CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhc
Q psy9492          83 HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF--GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF  160 (584)
Q Consensus        83 ~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~  160 (584)
                      +.+++++|+++|+|++.+|..|.||||.|+..  ++.+++++|++.|++++.+|..|.||||.++..+.+.+++++|++.
T Consensus       102 ~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        102 EPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             cHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            79999999999999999999999999998864  6899999999999999999999999999654444489999999999


Q ss_pred             CCCcccccCCCCCcHHHHHHHcC
Q psy9492         161 GASTTIQDKIHGNVALHWAIYAK  183 (584)
Q Consensus       161 ga~~~~~d~~~g~TpLh~A~~~g  183 (584)
                      |++++.+|. .|.||||+|+.++
T Consensus       182 Gadi~~~d~-~g~tpl~la~~~~  203 (209)
T PHA02859        182 GIDINETNK-SGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCCCCCC-CCCCHHHHHhhhh
Confidence            999999998 9999999999764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.9e-26  Score=241.95  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH-cCCHHHHHHHHHCCCcccc----------------------------
Q psy9492          15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAI-NNRIEIMKYFISQGAIVDA----------------------------   65 (584)
Q Consensus        15 ~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~-~~~~~~v~~Ll~~g~~~~~----------------------------   65 (584)
                      ..-|+++.|+++|+|+|.++.+|.+|+|+|+. +++.|++++|+++|++++.                            
T Consensus        83 ~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PHA02792         83 IDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDY  162 (631)
T ss_pred             ccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhcccc
Confidence            46689999999999999999999999999966 6999999999999987432                            


Q ss_pred             -------cCCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          66 -------IGGDLQATPLHWATRQG-------HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        66 -------~~~~~g~tpLh~A~~~g-------~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                             .++..|.||||+|+..+       +.++++.|+++|++++.+|..|.||||+|+...
T Consensus       163 ~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        163 DYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             ccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence                   12334899999999999       899999999999999999999999999777665

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=9.9e-26  Score=241.48  Aligned_cols=213  Identities=17%  Similarity=0.181  Sum_probs=178.3

Q ss_pred             hhhhhhHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC--CH
Q psy9492          11 YEFELTKVFVGKCVEAGQDVN-EPDSETVTLLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG--HL   84 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n-~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g--~~   84 (584)
                      .+.+.....+++.++..+++| .+|.+|.||||+|+.+|   +.+++++|+++|++++.++.. |.||||+|+..+  +.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~-G~TPLh~Aa~~~~~~~   92 (672)
T PHA02730         14 LDEDVTYKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNE-GLTPLGVYSKRKYVKS   92 (672)
T ss_pred             hcccchHHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCC-CCChHHHHHHcCCCcH
Confidence            345666777888899888888 88999999999999997   599999999999999988755 999999999977  79


Q ss_pred             HHHHHHHHCCC--CCCCCCCCCChHHHHHHH--hCCHHHHHHHHH-CCCCCCCCCC-----CCCcHHHHHHhhcCChhhH
Q psy9492          85 DSVVLLIQHGA--DPTLMDSEGSTCIHQAAQ--FGHTRIVAYLVA-KGINVNLQDR-----NGMTALMWSAYKVFSLDPT  154 (584)
Q Consensus        85 ~~v~~Ll~~ga--d~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~-~g~~~~~~d~-----~g~t~Lh~Aa~~~~~~~~~  154 (584)
                      +++++|+++|+  +++..|..+.+|++.++.  +++.+++++|++ .+++++....     .|.+|++.|+..+ ..+++
T Consensus        93 eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~-~~eIv  171 (672)
T PHA02730         93 QIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNP-RPEVL  171 (672)
T ss_pred             HHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCC-chHHH
Confidence            99999999965  457778789999999888  888999999997 6788776533     7899999999887 89999


Q ss_pred             HHHHhcCCCcc-------cccCCCCC-cHHHHHH------HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH--HHhcCCC
Q psy9492         155 RLLITFGASTT-------IQDKIHGN-VALHWAI------YAKNHVAITTLVSHTSSLEIPNAQGLTPFML--LEENIGA  218 (584)
Q Consensus       155 ~~Ll~~ga~~~-------~~d~~~g~-TpLh~A~------~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~l--A~~~~~~  218 (584)
                      ++|++.|++++       ..|. .+. |.||+++      .+++.+++++|+++|||+|.+|..|.||||.  |...++.
T Consensus       172 klLi~~g~~v~g~~~~~~~~~~-~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~  250 (672)
T PHA02730        172 LWLLKSECYSTGYVFRSCMYDS-DRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDI  250 (672)
T ss_pred             HHHHHcCCcccccccccccccC-CccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccH
Confidence            99999999995       2444 444 4455343      4578999999999999999999999999985  4445556


Q ss_pred             ccchHHHHHHHHH
Q psy9492         219 PWLGKATVDKITE  231 (584)
Q Consensus       219 ~~l~~~~~~~l~~  231 (584)
                      +     ++++|.+
T Consensus       251 e-----iv~~Li~  258 (672)
T PHA02730        251 E-----IVKLLIK  258 (672)
T ss_pred             H-----HHHHHHh
Confidence            6     8888876

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.2e-25  Score=244.90  Aligned_cols=215  Identities=14%  Similarity=0.103  Sum_probs=175.2

Q ss_pred             hhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492          15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL   90 (584)
Q Consensus        15 ~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   90 (584)
                      ...++++.|+++|+|++..|.+|.||||+|+..|+.    ++++.|++.+...+..+   ..+++|+|+..|+.++|++|
T Consensus        46 ~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~---~~~~~~~a~~~~~~e~vk~L  122 (661)
T PHA02917         46 NNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND---FNIFSYMKSKNVDVDLIKVL  122 (661)
T ss_pred             CcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC---cchHHHHHhhcCCHHHHHHH
Confidence            458999999999999999999999999999999984    45678887754444322   23778889999999999999


Q ss_pred             HHCCCCCCCCCCCCChHHHHH--HHhCCHHHHHHHHHCCCCCCCCCC---CC-----------CcHHHHHHhh-------
Q psy9492          91 IQHGADPTLMDSEGSTCIHQA--AQFGHTRIVAYLVAKGINVNLQDR---NG-----------MTALMWSAYK-------  147 (584)
Q Consensus        91 l~~gad~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~~d~---~g-----------~t~Lh~Aa~~-------  147 (584)
                      +++|+|++.+|..|.||||.|  +..|+.+++++|+++|++++.+|.   .|           .||||+|+..       
T Consensus       123 l~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~  202 (661)
T PHA02917        123 VEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESD  202 (661)
T ss_pred             HHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccccccc
Confidence            999999999999999999965  457899999999999999986653   23           5999999852       


Q ss_pred             ---cCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCCC----CCCCCCCCHHHHHHhcCCC
Q psy9492         148 ---VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH--VAITTLVSHTSSLE----IPNAQGLTPFMLLEENIGA  218 (584)
Q Consensus       148 ---~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~--~~v~~Ll~~gad~~----~~n~~g~tpl~lA~~~~~~  218 (584)
                         +.+.+++++|++.|+++|..|. .|.||||+|+..|+.  ++++.|++ |+|++    ..|..|.+|+++|..-++.
T Consensus       203 ~~~~~~~eiv~~Li~~Gadvn~~d~-~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~  280 (661)
T PHA02917        203 TRAYVRPEVVKCLINHGIKPSSIDK-NYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSD  280 (661)
T ss_pred             ccccCcHHHHHHHHHCCCCcccCCC-CCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhh
Confidence               2368999999999999999998 999999999999985  79999975 88875    4677788888888842211


Q ss_pred             ----ccchHHHHHHHHHHHh
Q psy9492         219 ----PWLGKATVDKITELKD  234 (584)
Q Consensus       219 ----~~l~~~~~~~l~~~~~  234 (584)
                          .-+...+++.|.+.++
T Consensus       281 ~~~~~~v~~~iv~~Li~~Ga  300 (661)
T PHA02917        281 YRYNKDVDLDLVKLFLENGK  300 (661)
T ss_pred             ccccccchHHHHHHHHhCCC
Confidence                0123347777777543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=3.6e-25  Score=252.22  Aligned_cols=178  Identities=20%  Similarity=0.246  Sum_probs=165.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy9492          33 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA  112 (584)
Q Consensus        33 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~  112 (584)
                      .+.++.++||.||..|+.++++.|+++|+++|..+.. |.||||+|+..|+.++++.|+++|+|++.+|.+|.||||.|+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK-GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            3456789999999999999999999999999987765 999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492         113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  192 (584)
Q Consensus       113 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll  192 (584)
                      ..|+.+++++|++.+...+.  ..+.++||+|+.+| +.++++.|++.|+++|.+|. +|+||||+|+..|+.+++++|+
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g-~~~~v~~Ll~~Gadin~~d~-~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRN-DLTAMKELLKQGLNVDSEDH-QGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcHHHHHHHH
Confidence            99999999999988766543  45779999999998 89999999999999999998 9999999999999999999999


Q ss_pred             hcCCCCCCCCCCC-CCHHHHHHhc
Q psy9492         193 SHTSSLEIPNAQG-LTPFMLLEEN  215 (584)
Q Consensus       193 ~~gad~~~~n~~g-~tpl~lA~~~  215 (584)
                      ++|||++.+|..| .||.+++...
T Consensus       676 ~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        676 MNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HcCCCCCCCCCCCCCCHHHHHHHH
Confidence            9999999999998 9999887543

>KOG4177|consensus

Probab=99.93  E-value=5.2e-26  Score=252.37  Aligned_cols=208  Identities=31%  Similarity=0.384  Sum_probs=152.3

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC-CHHHHHHHHHCC
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG-HLDSVVLLIQHG   94 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~g   94 (584)
                      ....++.++++|+++|.++..|.||||.|+..++.++++.++++|++++..+.. |.||+|.|+..| ..+....++++|
T Consensus       386 ~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~l-G~T~lhvaa~~g~~~~~~~~l~~~g  464 (1143)
T KOG4177|consen  386 RVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKL-GYTPLHVAAKKGRYLQIARLLLQYG  464 (1143)
T ss_pred             chhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhc-CCChhhhhhhcccHhhhhhhHhhcC
Confidence            445555556666666666666666666666666666666666666666554433 556666666555 555555555555


Q ss_pred             CCCCCCCCCCChHHHHHHHhCCHH---------------------------------HHHHHHHCCCCCCCCCCCCCcHH
Q psy9492          95 ADPTLMDSEGSTCIHQAAQFGHTR---------------------------------IVAYLVAKGINVNLQDRNGMTAL  141 (584)
Q Consensus        95 ad~~~~d~~g~t~L~~A~~~g~~~---------------------------------~v~~Ll~~g~~~~~~d~~g~t~L  141 (584)
                      ++++..-.+|.||||+|++.|+.+                                 +++.++++|++++.++..|.|||
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpL  544 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPL  544 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchH
Confidence            555555555555555555555554                                 44455556777888888999999


Q ss_pred             HHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccc
Q psy9492         142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL  221 (584)
Q Consensus       142 h~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l  221 (584)
                      |.|+..| +.++|++|+++|++++..|+ .|+||||.|+..|+.+++++|+++||++|..|.+|.||++.|.+.+..+  
T Consensus       545 h~A~~~g-~v~~VkfLLe~gAdv~ak~~-~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~--  620 (1143)
T KOG4177|consen  545 HVAVHYG-NVDLVKFLLEHGADVNAKDK-LGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLS--  620 (1143)
T ss_pred             HHHHhcC-CchHHHHhhhCCccccccCC-CCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccc--
Confidence            9999888 78999999999999999997 9999999999999999999999999999999999999999999999888  


Q ss_pred             hHHHHHHHHH
Q psy9492         222 GKATVDKITE  231 (584)
Q Consensus       222 ~~~~~~~l~~  231 (584)
                         +++.+..
T Consensus       621 ---~~k~l~~  627 (1143)
T KOG4177|consen  621 ---VVKLLKV  627 (1143)
T ss_pred             ---hhhHHHh
Confidence               6666655

>KOG0508|consensus

Probab=99.92  E-value=4.7e-25  Score=217.41  Aligned_cols=173  Identities=31%  Similarity=0.431  Sum_probs=159.3

Q ss_pred             HHHHHHHHHc-CCCCCC--------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHH
Q psy9492          17 KVFVGKCVEA-GQDVNE--------PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV   87 (584)
Q Consensus        17 ~~~l~~ll~~-g~d~n~--------~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v   87 (584)
                      -.++|+|+++ ++++..        ...+|.+||-.|+..|+.++||.|+++|+++|..+.. +.|||.-||..|+.++|
T Consensus        55 ~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T-NStPLraACfDG~leiv  133 (615)
T KOG0508|consen   55 ADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT-NSTPLRAACFDGHLEIV  133 (615)
T ss_pred             HHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccccc-CCccHHHHHhcchhHHH
Confidence            4577888884 666643        3458889999999999999999999999999987665 77999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccc
Q psy9492          88 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ  167 (584)
Q Consensus        88 ~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~  167 (584)
                      |+|+++|+|++..|+.|.|.||+||..|+.+++++|++.|+|+|.++..|.|+||.++..| +++++++|+++|+.++. 
T Consensus       134 KyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG-~vdivq~Ll~~ga~i~~-  211 (615)
T KOG0508|consen  134 KYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESG-SVDIVQLLLKHGAKIDV-  211 (615)
T ss_pred             HHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcc-cHHHHHHHHhCCceeee-
Confidence            9999999999999999999999999999999999999999999999999999999999999 89999999999998864 


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         168 DKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       168 d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      |. .|.|||..|+..|+.++|+.|++
T Consensus       212 d~-~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  212 DG-HGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cC-CCCchHHHHhhhcchHHHHHHhc
Confidence            55 79999999999999999999996

>KOG4177|consensus

Probab=99.92  E-value=3e-25  Score=246.31  Aligned_cols=214  Identities=24%  Similarity=0.347  Sum_probs=192.1

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9492          17 KVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD   96 (584)
Q Consensus        17 ~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad   96 (584)
                      .+....+.+.+.+-...++.|.+|+|.|+..|+.+.++.++++|++++..+.. |.||||.|+..++.++++.++++|++
T Consensus       354 ~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~-gvTplh~aa~~~~~~~v~l~l~~gA~  432 (1143)
T KOG4177|consen  354 VEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKN-GVTPLHVAAHYGNPRVVKLLLKRGAS  432 (1143)
T ss_pred             HHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCC-CcceeeehhhccCcceEEEEeccCCC
Confidence            33566667788888888999999999999999999999999999999887655 99999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHH--------------------
Q psy9492          97 PTLMDSEGSTCIHQAAQFG-HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTR--------------------  155 (584)
Q Consensus        97 ~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~--------------------  155 (584)
                      ++..+..|.||+|.|+..| ..+....+.+.|.+++.....|.||||.|+..| +.++++                    
T Consensus       433 ~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~G-h~~~~~llle~~~~~~~~~~~~l~~l  511 (1143)
T KOG4177|consen  433 PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEG-HTEVVQLLLEGGANDNLDAKKGLTPL  511 (1143)
T ss_pred             hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccC-CchHHHHhhhcCCccCccchhccchh
Confidence            9999999999999999999 788888999999999999999999999999887 454444                    


Q ss_pred             -------------HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccch
Q psy9492         156 -------------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLG  222 (584)
Q Consensus       156 -------------~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~  222 (584)
                                   .++++|++++.++. .|+||||.|+.+|+.++|++|+++|||++++++.|+||||.|+..|+.+   
T Consensus       512 hla~~~~~v~~~~~l~~~ga~v~~~~~-r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~---  587 (1143)
T KOG4177|consen  512 HLAADEDTVKVAKILLEHGANVDLRTG-RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND---  587 (1143)
T ss_pred             hhhhhhhhHHHHHHHhhcCCceehhcc-cccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH---
Confidence                         44556777888887 8999999999999999999999999999999999999999999999888   


Q ss_pred             HHHHHHHHHHHhcccc
Q psy9492         223 KATVDKITELKDHYNT  238 (584)
Q Consensus       223 ~~~~~~l~~~~~~~~~  238 (584)
                        ++++|.+.+...+.
T Consensus       588 --i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  588 --IAELLLKHGASVNA  601 (1143)
T ss_pred             --HHHHHHHcCCCCCc
Confidence              99999886665443

>KOG0502|consensus

Probab=99.91  E-value=2.3e-25  Score=199.23  Aligned_cols=185  Identities=22%  Similarity=0.218  Sum_probs=169.1

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy9492          30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIH  109 (584)
Q Consensus        30 ~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~  109 (584)
                      ++..|.+|++++|.|+-.++.+.+..++.+|+..|..+-- +.+|+.+++..-+.+.+..+.++  .+|..|..|.|||.
T Consensus        89 ~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~-p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLi  165 (296)
T KOG0502|consen   89 IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLM-PWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLI  165 (296)
T ss_pred             CCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccc-cCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhH
Confidence            4456778999999999999999999999999988876654 89999999999999988777765  57788999999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q psy9492         110 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT  189 (584)
Q Consensus       110 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~  189 (584)
                      .|+..|++.++++|++.|+|++..-+...++|+.|+..| ..+++++|++++.|+|..|- +|-|||-+|++.++.++++
T Consensus       166 WAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~gg-ytdiV~lLL~r~vdVNvyDw-NGgTpLlyAvrgnhvkcve  243 (296)
T KOG0502|consen  166 WAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGG-YTDIVELLLTREVDVNVYDW-NGGTPLLYAVRGNHVKCVE  243 (296)
T ss_pred             HHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCC-hHHHHHHHHhcCCCcceecc-CCCceeeeeecCChHHHHH
Confidence            999999999999999999999999999999999999888 79999999999999999998 9999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHhcCCCc
Q psy9492         190 TLVSHTSSLEIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       190 ~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~  219 (584)
                      .|++.|||++..+..|.+++++|+.-|...
T Consensus       244 ~Ll~sGAd~t~e~dsGy~~mdlAValGyr~  273 (296)
T KOG0502|consen  244 SLLNSGADVTQEDDSGYWIMDLAVALGYRI  273 (296)
T ss_pred             HHHhcCCCcccccccCCcHHHHHHHhhhHH
Confidence            999999999999999999999999988764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.7e-23  Score=237.19  Aligned_cols=207  Identities=23%  Similarity=0.173  Sum_probs=168.6

Q ss_pred             hhhHHHHHHHHHc--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcC---CHHHH
Q psy9492          14 ELTKVFVGKCVEA--GQDVNEPDSETVTLLH-WAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG---HLDSV   87 (584)
Q Consensus        14 ~~~~~~l~~ll~~--g~d~n~~d~~g~t~Lh-~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g---~~~~v   87 (584)
                      ....+.++.+++.  +.|+|..|..|.|||| .|+.+++.++++.|+++|+     .+..|.||||.|+..+   ...++
T Consensus        27 ~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll  101 (743)
T TIGR00870        27 RGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAIL  101 (743)
T ss_pred             cCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHH
Confidence            3355677888888  8999999999999999 8889999999999999987     2345999999998732   22333


Q ss_pred             HHHHHCCCC------C----CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHH
Q psy9492          88 VLLIQHGAD------P----TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--------------RNGMTALMW  143 (584)
Q Consensus        88 ~~Ll~~gad------~----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~g~t~Lh~  143 (584)
                      +.+.+.+.+      .    ...+..|.||||+|+..|+.+++++|+++|++++.++              ..|.||||.
T Consensus       102 ~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~  181 (743)
T TIGR00870       102 LHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNA  181 (743)
T ss_pred             HHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHH
Confidence            444444322      1    1123569999999999999999999999999998653              258999999


Q ss_pred             HHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcC---------CHHHHHHHHhcCCCC-------CCCCCCCCC
Q psy9492         144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK---------NHVAITTLVSHTSSL-------EIPNAQGLT  207 (584)
Q Consensus       144 Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g---------~~~~v~~Ll~~gad~-------~~~n~~g~t  207 (584)
                      |+..| +.+++++|++.|+|+|.+|. .|+||||+|+..+         ..++.+++++.+++.       +++|.+|.|
T Consensus       182 Aa~~~-~~~iv~lLl~~gadin~~d~-~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~T  259 (743)
T TIGR00870       182 AACLG-SPSIVALLSEDPADILTADS-LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLT  259 (743)
T ss_pred             HHHhC-CHHHHHHHhcCCcchhhHhh-hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCC
Confidence            99988 89999999999999999998 9999999999986         234566676666543       678999999


Q ss_pred             HHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         208 PFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       208 pl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                      |+++|++.++.+     +.+.+.+.
T Consensus       260 PL~~A~~~g~~~-----l~~lLL~~  279 (743)
T TIGR00870       260 PLKLAAKEGRIV-----LFRLKLAI  279 (743)
T ss_pred             chhhhhhcCCcc-----HHHHHHHH
Confidence            999999999999     88888774

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.90  E-value=1.8e-23  Score=187.04  Aligned_cols=200  Identities=22%  Similarity=0.328  Sum_probs=177.2

Q ss_pred             cccccchhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCC
Q psy9492           4 WRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH   83 (584)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~   83 (584)
                      |++++..+.+- ...++...+.+|+..|+.+.-+.+|+.+++...+.+.+..+.++  .+|..+ +.|.|||.||+..|+
T Consensus        97 ~~~~~v~ap~~-s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~D-e~GfTpLiWAaa~G~  172 (296)
T KOG0502|consen   97 WSALLVAAPCG-SVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACD-EFGFTPLIWAAAKGH  172 (296)
T ss_pred             hhhhhhcCCCC-CcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCcc-ccCchHhHHHHhcCc
Confidence            66666655544 55566677889999999999999999999999988887766554  455554 459999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCC
Q psy9492          84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS  163 (584)
Q Consensus        84 ~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~  163 (584)
                      +++|++|++.|+|++...+...++|.+|++.|..+++++|++++.|+|..|.+|.|||.+|+..+ +.+|++.|+..|++
T Consensus       173 i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn-hvkcve~Ll~sGAd  251 (296)
T KOG0502|consen  173 IPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN-HVKCVESLLNSGAD  251 (296)
T ss_pred             hHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC-hHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999766 89999999999999


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy9492         164 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFM  210 (584)
Q Consensus       164 ~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~  210 (584)
                      ++..|+ .|++++..|+..|+. .|+..+++-++.+..|..-+||+|
T Consensus       252 ~t~e~d-sGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  252 VTQEDD-SGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             cccccc-cCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999998 999999999999998 889999888888888877777753

>KOG0505|consensus

Probab=99.90  E-value=1.4e-23  Score=211.58  Aligned_cols=197  Identities=28%  Similarity=0.336  Sum_probs=173.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9492          17 KVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD   96 (584)
Q Consensus        17 ~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad   96 (584)
                      -+-++.++..|+++|..+.+|.|+||-+|...+.+||++|+++|+++|..+.. |+||||.|+..|+..++++|+++|++
T Consensus        53 ~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e-~wtPlhaaascg~~~i~~~li~~gA~  131 (527)
T KOG0505|consen   53 LEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNE-GWTPLHAAASCGYLNIVEYLIQHGAN  131 (527)
T ss_pred             HHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccc-cCCcchhhcccccHHHHHHHHHhhhh
Confidence            34567788999999999999999999999999999999999999999998876 99999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhC--------------CHH------------HHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          97 PTLMDSEGSTCIHQAAQFG--------------HTR------------IVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        97 ~~~~d~~g~t~L~~A~~~g--------------~~~------------~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      +...|.+|..|..++....              .++            -++..+..|.+.+..+..|.|+||.|+.+| .
T Consensus       132 ~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~G-y  210 (527)
T KOG0505|consen  132 LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANG-Y  210 (527)
T ss_pred             hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhh-H
Confidence            9888888877755332111              111            122334478888888888999999999999 7


Q ss_pred             hhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       151 ~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      .++.++|++.|.+++.+|. +|+||||.|+..|..+++++|+++|++.+++++.|.||+++|.+..
T Consensus       211 ~e~~~lLl~ag~~~~~~D~-dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~  275 (527)
T KOG0505|consen  211 TEVAALLLQAGYSVNIKDY-DGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEE  275 (527)
T ss_pred             HHHHHHHHHhccCcccccc-cCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhh
Confidence            9999999999999999998 9999999999999999999999999999999999999999998753

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.2e-22  Score=215.69  Aligned_cols=211  Identities=14%  Similarity=0.154  Sum_probs=172.8

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHH-HHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHH-cCCHHHHHHHHHCCC
Q psy9492          18 VFVGKCVEAGQDVNEPDSETVTLLHW-AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR-QGHLDSVVLLIQHGA   95 (584)
Q Consensus        18 ~~l~~ll~~g~d~n~~d~~g~t~Lh~-A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~-~g~~~~v~~Ll~~ga   95 (584)
                      .-++.++.-|.+++..+.+|.+++|. |+.+|+.|++++|+++|+++|..+++ |.||+|+|+. .++.+++++|+++||
T Consensus        52 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~-~~~~l~ya~~~~~~~eivk~Ll~~Ga  130 (631)
T PHA02792         52 IKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNG-INIVEKYATTSNPNVDVFKLLLDKGI  130 (631)
T ss_pred             HHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCC-CCcceeEeecCCCChHHHHHHHHCCC
Confidence            34456677788888999999999986 56789999999999999999988775 8899999965 699999999999998


Q ss_pred             CCC------------------------------------CCCCCCChHHHHHHHhC-------CHHHHHHHHHCCCCCCC
Q psy9492          96 DPT------------------------------------LMDSEGSTCIHQAAQFG-------HTRIVAYLVAKGINVNL  132 (584)
Q Consensus        96 d~~------------------------------------~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~  132 (584)
                      |+.                                    ..|..|.||||+|+.++       +.++++.|+++|++++.
T Consensus       131 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~  210 (631)
T PHA02792        131 PTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY  210 (631)
T ss_pred             CcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc
Confidence            742                                    33556999999999999       89999999999999999


Q ss_pred             CCCCCCcHHHHHHhhcC---------------------------------------------------------------
Q psy9492         133 QDRNGMTALMWSAYKVF---------------------------------------------------------------  149 (584)
Q Consensus       133 ~d~~g~t~Lh~Aa~~~~---------------------------------------------------------------  149 (584)
                      +|..|.||||+|+.+..                                                               
T Consensus       211 ~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~  290 (631)
T PHA02792        211 YTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLR  290 (631)
T ss_pred             cCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhh
Confidence            99999999998875430                                                               


Q ss_pred             ------------------------------------------------------------ChhhHHHHHhcCCCcccccC
Q psy9492         150 ------------------------------------------------------------SLDPTRLLITFGASTTIQDK  169 (584)
Q Consensus       150 ------------------------------------------------------------~~~~~~~Ll~~ga~~~~~d~  169 (584)
                                                                                  +.+++++|+++||+++..|.
T Consensus       291 ~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~  370 (631)
T PHA02792        291 NNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDD  370 (631)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcC
Confidence                                                                        12556667777888877776


Q ss_pred             CC--CCcHHHHHHHcCCHH---HHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         170 IH--GNVALHWAIYAKNHV---AITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       170 ~~--g~TpLh~A~~~g~~~---~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                       .  +.||||.|+.....+   ++++|+++|||++.+|..|.|||+.|+..++.+     +++.|.+.++.
T Consensus       371 -~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~e-----ivelLLs~GAD  435 (631)
T PHA02792        371 -NIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVS-----LVEWLIDNGAD  435 (631)
T ss_pred             -CCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHH-----HHHHHHHCCCC
Confidence             5  468888877766543   578888899999999999999999999888877     88888775443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=5.2e-22  Score=226.41  Aligned_cols=165  Identities=20%  Similarity=0.168  Sum_probs=151.8

Q ss_pred             hhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9492          13 FELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ   92 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~   92 (584)
                      .....++++.|+++|+|+|..|.+|.||||+|+.+|+.++++.|+++|+++|.++.. |.||||+|+..|+.+++++|++
T Consensus       534 ~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~-G~TpL~~A~~~g~~~iv~~L~~  612 (823)
T PLN03192        534 STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN-GNTALWNAISAKHHKIFRILYH  612 (823)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999999999987665 9999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCC
Q psy9492          93 HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG  172 (584)
Q Consensus        93 ~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g  172 (584)
                      .++..+.  ..|.++||.|+..|+.++++.|+++|+|++.+|.+|.||||+|+.+| +.+++++|++.|++++..|. .|
T Consensus       613 ~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g-~~~iv~~Ll~~GAdv~~~~~-~g  688 (823)
T PLN03192        613 FASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAED-HVDMVRLLIMNGADVDKANT-DD  688 (823)
T ss_pred             cCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC-cHHHHHHHHHcCCCCCCCCC-CC
Confidence            8876543  45779999999999999999999999999999999999999999998 89999999999999999998 66


Q ss_pred             -CcHHHHHHHc
Q psy9492         173 -NVALHWAIYA  182 (584)
Q Consensus       173 -~TpLh~A~~~  182 (584)
                       .||++++...
T Consensus       689 ~~t~~~l~~~~  699 (823)
T PLN03192        689 DFSPTELRELL  699 (823)
T ss_pred             CCCHHHHHHHH
Confidence             9999877554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=5.3e-22  Score=182.11  Aligned_cols=134  Identities=19%  Similarity=0.283  Sum_probs=80.0

Q ss_pred             CCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHH---HHHHHHHCCCCCCCCC-CCCCcHHH
Q psy9492          71 QATPLHWATRQGHL----DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQD-RNGMTALM  142 (584)
Q Consensus        71 g~tpLh~A~~~g~~----~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~---~v~~Ll~~g~~~~~~d-~~g~t~Lh  142 (584)
                      +.+++|.||+.|+.    ++++.|++.|++++.+|..|.||||+|+..|+.+   ++++|+++|++++.+| ..|.||||
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh   99 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLH   99 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHH
Confidence            44555555555554    3334445555555555555555555555555433   2556666666666665 35666666


Q ss_pred             HHHhhcCChhhHHHHHh-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy9492         143 WSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL  206 (584)
Q Consensus       143 ~Aa~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~  206 (584)
                      +|+..+ +.+++++|+. .|++++.+|. .|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus       100 ~A~~~g-~~~iv~~Ll~~~gad~~~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        100 IAASTK-NYELAEWLCRQLGVNLGAINY-QHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHhC-CHHHHHHHHhccCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            666555 5566666663 5666666665 666777777666666777777777777766666654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=179.63  Aligned_cols=146  Identities=17%  Similarity=0.171  Sum_probs=131.5

Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHH---HHHHHHCCCCC
Q psy9492          25 EAGQDVNEPDSETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS---VVLLIQHGADP   97 (584)
Q Consensus        25 ~~g~d~n~~d~~g~t~Lh~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~---v~~Ll~~gad~   97 (584)
                      .+|+|++..+.++.+++|.||+.|+.    +++++|++.|++++..+.. |.||||+|+..|+.+.   +++|+++|+++
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~-g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHH-GRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCC-CCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            35788888999999999999999998    6666788899988876655 9999999999998654   79999999999


Q ss_pred             CCCC-CCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCC
Q psy9492          98 TLMD-SEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN  173 (584)
Q Consensus        98 ~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~  173 (584)
                      +.+| ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.++ +.+++++|+++|++++..+. .|.
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~-~~~iv~~Ll~~ga~~~~~~~-~~~  162 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMR-DRRMMEILRANGAVCDDPLS-IGL  162 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCccc-CCc
Confidence            9998 589999999999999999999996 79999999999999999999888 78999999999999999887 553

>KOG0507|consensus

Probab=99.87  E-value=6e-22  Score=206.11  Aligned_cols=201  Identities=23%  Similarity=0.308  Sum_probs=180.7

Q ss_pred             hhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          12 EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        12 ~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      ..+....+++.|++..+-++..|..|.+|||+|+.+|+.++++.++.++..+|..... |.||||.|+++||.+++.+|+
T Consensus        57 ~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e-~~tplhlaaqhgh~dvv~~Ll  135 (854)
T KOG0507|consen   57 VLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIE-NETPLHLAAQHGHLEVVFYLL  135 (854)
T ss_pred             HhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccccc-CcCccchhhhhcchHHHHHHH
Confidence            3555788899999999888989999999999999999999999999999777776554 999999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCC--------CCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCC
Q psy9492          92 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV--------NLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS  163 (584)
Q Consensus        92 ~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--------~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~  163 (584)
                      ++|+|+-.+|.++.|++.+|++.|..++++.|++...++        ..++..+.+|+|.|+.+| +.++++.|++.|.+
T Consensus       136 ~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakng-h~~~~~~ll~ag~d  214 (854)
T KOG0507|consen  136 KKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNG-HVECMQALLEAGFD  214 (854)
T ss_pred             hcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcc-hHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999874332        234556789999999988 89999999999999


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         164 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       164 ~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      +|.+.. . -|+||.|+..|..++|++|++.|.+.+++|..|+|++++..+.-
T Consensus       215 in~~t~-~-gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  215 INYTTE-D-GTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             cccccc-c-chhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcc
Confidence            999886 4 49999999999999999999999999999999999999876653

>KOG0514|consensus

Probab=99.85  E-value=2.3e-21  Score=185.98  Aligned_cols=154  Identities=25%  Similarity=0.328  Sum_probs=125.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHh-----CCHHHHHHHHHCCCCCCCCC-CCCCcHHH
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQF-----GHTRIVAYLVAKGINVNLQD-RNGMTALM  142 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh  142 (584)
                      .|+|+||+|+.+++.++|+.|++.| +|++.+|+.|+||+++|+-.     .+..+|.-|...| |+|.+- ..|.|+||
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALM  345 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALM  345 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhh
Confidence            3888888888888888888888887 67888888888888887743     3456777777765 566543 35888999


Q ss_pred             HHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCccc
Q psy9492         143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH-TSSLEIPNAQGLTPFMLLEENIGAPWL  221 (584)
Q Consensus       143 ~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~n~~g~tpl~lA~~~~~~~~l  221 (584)
                      +|+.+| ..++++.|+..|+|+|.||+ +|.|+|+.|+.+|+.+++++||.. +.|....|.+|-|+|.+|.+.|+.+  
T Consensus       346 LAVSHG-r~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e--  421 (452)
T KOG0514|consen  346 LAVSHG-RVDMVKALLACGADVNIQDD-DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE--  421 (452)
T ss_pred             hhhhcC-cHHHHHHHHHccCCCccccC-CccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchH--
Confidence            888888 78889999999999999988 899999999999999999888874 5788888899999999999888888  


Q ss_pred             hHHHHHHHHH
Q psy9492         222 GKATVDKITE  231 (584)
Q Consensus       222 ~~~~~~~l~~  231 (584)
                         +.-+|-.
T Consensus       422 ---Ia~mlYa  428 (452)
T KOG0514|consen  422 ---IAVMLYA  428 (452)
T ss_pred             ---HHHHHHH
Confidence               6655544

>KOG0507|consensus

Probab=99.85  E-value=3.8e-21  Score=200.19  Aligned_cols=195  Identities=23%  Similarity=0.245  Sum_probs=175.8

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q psy9492          28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC  107 (584)
Q Consensus        28 ~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~  107 (584)
                      .++|.+|.+|.|+||.|+.+|+.++++.|++..+-++..+ ..|.+|||+|+..|+.+++++++.++..+|+.+..|.||
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d-~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD-TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhh-ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence            3468899999999999999999999999999998888877 459999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCc--------ccccCCCCCcHHHHH
Q psy9492         108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST--------TIQDKIHGNVALHWA  179 (584)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~--------~~~d~~~g~TpLh~A  179 (584)
                      ||.|++.|+.+++.+|+.+|+|.-.+|+.+.|+|..|++-| ..++++.|++...++        ...+ ..+-+|||.|
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfg-r~~Vvq~ll~~~~~~~~~~~~~~~~~~-~~~~~plHla  196 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFG-RAEVVQMLLQKKFPVQSSLRVGDIKRP-FPAIYPLHLA  196 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhh-hhHHHHHHhhhccchhhcccCCCCCCC-CCCcCCcchh
Confidence            99999999999999999999999999999999999999998 899999998862221        1223 2678999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         180 IYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       180 ~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +++|+.++++.|+++|.|+|....+| |++|.|...|..+     ++..|.+
T Consensus       197 akngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~e-----vvr~ll~  242 (854)
T KOG0507|consen  197 AKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAE-----VVRFLLE  242 (854)
T ss_pred             hhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcch-----hhhHHHh
Confidence            99999999999999999999877665 8999999999988     8888777

>KOG0514|consensus

Probab=99.85  E-value=3e-21  Score=185.09  Aligned_cols=162  Identities=29%  Similarity=0.369  Sum_probs=145.2

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CcccccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCCCCCC
Q psy9492          29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQG-AIVDAIGGDLQATPLHWATRQ-----GHLDSVVLLIQHGADPTLMDS  102 (584)
Q Consensus        29 d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpLh~A~~~-----g~~~~v~~Ll~~gad~~~~d~  102 (584)
                      -+|..|.+|+|+||+|+.+.++++|+.|++.| .++|... ..|.||+++|+..     .+.++|..|.+.| |+|++-+
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-rAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs  337 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-RAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS  337 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccc-cccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence            36889999999999999999999999999987 4666654 4599999998864     3578899999886 8888655


Q ss_pred             -CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhc-CCCcccccCCCCCcHHHHHH
Q psy9492         103 -EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF-GASTTIQDKIHGNVALHWAI  180 (584)
Q Consensus       103 -~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~-ga~~~~~d~~~g~TpLh~A~  180 (584)
                       .|.|+|++|+.+|+.++++.|+..|+|+|..|.+|.|+||+|+.+| +.|++++|+.. ++|+...|. +|.|+|.+|.
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHG-hkEivklLLA~p~cd~sLtD~-DgSTAl~IAl  415 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHG-HKEIVKLLLAVPSCDISLTDV-DGSTALSIAL  415 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhC-hHHHHHHHhccCcccceeecC-CCchhhhhHH
Confidence             4999999999999999999999999999999999999999999999 89999999987 789999998 9999999999


Q ss_pred             HcCCHHHHHHHHhc
Q psy9492         181 YAKNHVAITTLVSH  194 (584)
Q Consensus       181 ~~g~~~~v~~Ll~~  194 (584)
                      ..|+.++.-+|..+
T Consensus       416 eagh~eIa~mlYa~  429 (452)
T KOG0514|consen  416 EAGHREIAVMLYAH  429 (452)
T ss_pred             hcCchHHHHHHHHH
Confidence            99999998887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2.3e-20  Score=184.48  Aligned_cols=157  Identities=17%  Similarity=0.162  Sum_probs=133.1

Q ss_pred             CCCCCCCCCc-HHHHHHHcCCHHHHHHHHHCCCcccccC---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCC
Q psy9492          30 VNEPDSETVT-LLHWAAINNRIEIMKYFISQGAIVDAIG---GDLQATPLHWATRQGHLDSVVLLIQHGADPTLM-DSEG  104 (584)
Q Consensus        30 ~n~~d~~g~t-~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~---~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~g  104 (584)
                      +..+|..|.| +||.|+..|+.+++++|+++|++++.+.   +..|.||||+|+..|+.+++++|+++|+|++.+ +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4566777765 5566677799999999999999999863   346999999999999999999999999999986 4679


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCC
Q psy9492         105 STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN  184 (584)
Q Consensus       105 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~  184 (584)
                      .||||.|+..++.+++++|++.|++++.+|..|.||||+|+..+ ..+++.++.  |.+   .+. .+.+|++.+   ++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~-~~~~~~~~~--~~~---~~~-~~~~~~~~~---~n  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMIC-NNFLAFMIC--DNE---ISN-FYKHPKKIL---IN  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC-ChhHHHHhc--CCc---ccc-cccChhhhh---cc
Confidence            99999999999999999999999999999999999999999876 556665554  332   344 788899875   47


Q ss_pred             HHHHHHHHhcCC
Q psy9492         185 HVAITTLVSHTS  196 (584)
Q Consensus       185 ~~~v~~Ll~~ga  196 (584)
                      .++++.|+++++
T Consensus       175 ~ei~~~Lish~v  186 (300)
T PHA02884        175 FDILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            899999999987

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=4.3e-20  Score=209.55  Aligned_cols=176  Identities=19%  Similarity=0.148  Sum_probs=147.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHC--CCcccccCCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQ--GAIVDAIGGDLQATPLH-WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA  111 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~g~tpLh-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A  111 (584)
                      .++...++.|+.+|+.+.++.++++  +.++|..+.. |.|||| .|+.+++.++++.|+++|+    ++..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~-G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRL-GRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCcc-chhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH
Confidence            4567899999999999999999998  8888876654 999999 8889999999999999987    678899999999


Q ss_pred             HHhCC---HHHHHHHHHCCCC------CC----CCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccC---------
Q psy9492         112 AQFGH---TRIVAYLVAKGIN------VN----LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---------  169 (584)
Q Consensus       112 ~~~g~---~~~v~~Ll~~g~~------~~----~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~---------  169 (584)
                      +..+.   ..++..+...+.+      ++    ..+..|.||||+|+.+| +.+++++|+++|++++..+.         
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~-~~eiVklLL~~GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQ-NYEIVKLLLERGASVPARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhC-CHHHHHHHHhCCCCCCcCcCCchhhcCCC
Confidence            98322   2344444444322      11    12346999999999998 89999999999999986532         


Q ss_pred             ----CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         170 ----IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       170 ----~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                          ..|.||||.|+..|+.+++++|+++|+|++.+|..|+||+|+|+..+
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence                15899999999999999999999999999999999999999999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=5.7e-20  Score=169.41  Aligned_cols=124  Identities=24%  Similarity=0.301  Sum_probs=62.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCChHHHHHHHhCC----HHHHHHHHHCCCCCCCCCC-CCCc
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQ------HGADPTLMDSEGSTCIHQAAQFGH----TRIVAYLVAKGINVNLQDR-NGMT  139 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~------~gad~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~d~-~g~t  139 (584)
                      |.||||+|++.|+.++++.|++      .|++++.+|..|.||||+|+..|+    .+++++|++.|++++.+|. .|.|
T Consensus        21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~T  100 (169)
T PHA02741         21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDT  100 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCC
Confidence            4455555555555555544432      234445555555555555555554    2445555555555555543 4555


Q ss_pred             HHHHHHhhcCChhhHHHHHh-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy9492         140 ALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  196 (584)
Q Consensus       140 ~Lh~Aa~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  196 (584)
                      |||+|+..+ +.+++++|++ .|++++..|. .|.||||.|+..++.+++++|++.++
T Consensus       101 pLh~A~~~~-~~~iv~~Ll~~~g~~~~~~n~-~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741        101 ALHLAAHRR-DHDLAEWLCCQPGIDLHFCNA-DNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             HHHHHHHcC-CHHHHHHHHhCCCCCCCcCCC-CCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            555555444 4555555554 3555555554 55555555555555555555555443

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.1e-19  Score=167.42  Aligned_cols=134  Identities=21%  Similarity=0.297  Sum_probs=120.5

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHH------CCCcccccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCC
Q psy9492          30 VNEPDSETVTLLHWAAINNRIEIMKYFIS------QGAIVDAIGGDLQATPLHWATRQGH----LDSVVLLIQHGADPTL   99 (584)
Q Consensus        30 ~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~------~g~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~gad~~~   99 (584)
                      ++.+|..|.||||+|+..|+.++++.|+.      .|++++.++.. |.||||+|+..|+    .+++++|+++|++++.
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~-g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA-GQMCIHIAAEKHEAQLAAEIIDHLIELGADINA   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC-CCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Confidence            56778999999999999999999999854      35778877655 9999999999999    5889999999999999


Q ss_pred             CCC-CCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcc
Q psy9492         100 MDS-EGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT  165 (584)
Q Consensus       100 ~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~  165 (584)
                      +|. .|.||||.|++.++.+++++|++ .|++++.+|..|.||||.|+..+ +.+++++|++.++...
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~-~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNE-DVAMMQILREIVATSR  159 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCC-CHHHHHHHHHHHHHhc
Confidence            985 89999999999999999999998 49999999999999999999988 7899999999876543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=5.4e-19  Score=174.77  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=118.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHh
Q psy9492          72 ATPLHWATRQGHLDSVVLLIQHGADPTLMD----SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAY  146 (584)
Q Consensus        72 ~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~Aa~  146 (584)
                      .++||.|+..|+.++++.|+++|+|++.++    ..|.||||.|++.++.+++++|+++|++++.++ ..|.||||.|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            457778888899999999999999999874    589999999999999999999999999999864 579999999999


Q ss_pred             hcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy9492         147 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL  212 (584)
Q Consensus       147 ~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA  212 (584)
                      .+ ..+++++|++.|++++.+|. .|.||||+|+..++.+++..+.  |..   .+..+.+|...+
T Consensus       114 ~~-~~eivklLL~~GAdin~kd~-~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~  172 (300)
T PHA02884        114 HG-CLKCLEILLSYGADINIQTN-DMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL  172 (300)
T ss_pred             cC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh
Confidence            88 89999999999999999998 9999999999999988876554  332   466677887765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.2e-19  Score=164.69  Aligned_cols=132  Identities=20%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC--ccc----ccCCCCCCcHHHHHHHcCCHH---HHHHHHHCCCCCCCC
Q psy9492          30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGA--IVD----AIGGDLQATPLHWATRQGHLD---SVVLLIQHGADPTLM  100 (584)
Q Consensus        30 ~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~--~~~----~~~~~~g~tpLh~A~~~g~~~---~v~~Ll~~gad~~~~  100 (584)
                      .+..|.+|.||||+|+..|+.  ++.+...+.  +.+    ...+..|.||||+|+..|+.+   ++++|+++|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            345556666666666666652  222222111  110    011223555555555555542   345555555555555


Q ss_pred             C-CCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCc
Q psy9492         101 D-SEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST  164 (584)
Q Consensus       101 d-~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~  164 (584)
                      | ..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..| +.+++++|++.|++.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~-~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERH-DAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCCC
Confidence            4 2555555555555555555555542 5555555555555555555444 445555555555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=164.03  Aligned_cols=128  Identities=19%  Similarity=0.228  Sum_probs=109.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCC--C-----CCCCCCCCChHHHHHHHhCCH---HHHHHHHHCCCCCCCCCC-CC
Q psy9492          69 DLQATPLHWATRQGHLDSVVLLIQHGA--D-----PTLMDSEGSTCIHQAAQFGHT---RIVAYLVAKGINVNLQDR-NG  137 (584)
Q Consensus        69 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga--d-----~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~d~-~g  137 (584)
                      ..|.||||+|++.|+.  ++++...+.  +     ++.+|..|.||||+|+..|+.   +++++|++.|++++.+|. .|
T Consensus        15 ~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g   92 (154)
T PHA02736         15 IEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG   92 (154)
T ss_pred             CCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence            4499999999999984  333333322  2     234688999999999999986   468899999999999984 89


Q ss_pred             CcHHHHHHhhcCChhhHHHHHh-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy9492         138 MTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEI  200 (584)
Q Consensus       138 ~t~Lh~Aa~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~  200 (584)
                      .||||+|+..+ +.+++++|++ .|++++.+|. .|.||||+|+..|+.+++++|+++|++.++
T Consensus        93 ~T~Lh~A~~~~-~~~i~~~Ll~~~g~d~n~~~~-~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         93 NTPLHIAVYTQ-NYELATWLCNQPGVNMEILNY-AFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             CcHHHHHHHhC-CHHHHHHHHhCCCCCCccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999988 7999999997 5999999998 999999999999999999999999998763

>KOG0512|consensus

Probab=99.79  E-value=9e-19  Score=151.46  Aligned_cols=141  Identities=25%  Similarity=0.263  Sum_probs=124.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChh
Q psy9492          74 PLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  152 (584)
Q Consensus        74 pLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~  152 (584)
                      -+-||+..+.+..|+.|++..++ +|.+|.+|.||||.|+.+|+.++++.|+..|++.+.+...|.||||-||.-+ +.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn-N~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN-NFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc-chh
Confidence            46789999999999999987765 7889999999999999999999999999999999999999999999888776 799


Q ss_pred             hHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH-HHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNH-VAITTLVS-HTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       153 ~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~-~~v~~Ll~-~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      ++..|+++|+|+|++.+ ...||||.|+...+. ..+++|+. .+.++..++..+.||+++|.+.+
T Consensus       145 va~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999998 889999999987764 45666654 67899999999999999998875

>KOG4369|consensus

Probab=99.78  E-value=2.2e-19  Score=191.87  Aligned_cols=213  Identities=22%  Similarity=0.236  Sum_probs=198.1

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA   95 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga   95 (584)
                      -+++++.|+.+|+++..+|..|.+||-+|+-.|+..+|+.|+++.++++...+..+.|+|.+||..|+.++|++|+.+|+
T Consensus       769 h~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~ga  848 (2131)
T KOG4369|consen  769 HREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGA  848 (2131)
T ss_pred             cHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhc
Confidence            57899999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC--CCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCC
Q psy9492          96 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN  173 (584)
Q Consensus        96 d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~--~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~  173 (584)
                      +-..++-...|||.+|...|.++++..|+..|..++.+..  .|-.||+.|+.+| +.+..+.|++.|.|+|.+-..+.+
T Consensus       849 nkehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmng-h~~at~~ll~~gsdiNaqIeTNrn  927 (2131)
T KOG4369|consen  849 NKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNG-HQAATLSLLQPGSDINAQIETNRN  927 (2131)
T ss_pred             cccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcc-ccHHHHHHhcccchhccccccccc
Confidence            9999999999999999999999999999999988887654  5889999999998 788999999999999998776899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         174 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       174 TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      |+|-+|+..|..+++.+||.+.+++..+-+.|.|||.-++..|..+     +-+.|...++
T Consensus       928 Taltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvd-----vg~~li~~ga  983 (2131)
T KOG4369|consen  928 TALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVD-----VGNLLIAAGA  983 (2131)
T ss_pred             cceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccc-----cchhhhhccc
Confidence            9999999999999999999999999999999999999999999888     6666655433

>KOG0512|consensus

Probab=99.76  E-value=8.1e-18  Score=145.61  Aligned_cols=144  Identities=29%  Similarity=0.350  Sum_probs=126.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCc-ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCH
Q psy9492          39 TLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT  117 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~  117 (584)
                      -.+.||+..+..+.|+.|++..++ +|.++. .|.||||-|+.+|+.++|+.|+.+||+++++...|.||||.||.-.+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            357799999999999999988776 555554 499999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHh-cCCCcccccCCCCCcHHHHHHHcCC
Q psy9492         118 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKN  184 (584)
Q Consensus       118 ~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~~~g~  184 (584)
                      +++..|+++|+|++.......||||.||-..+....+.+|+. .++++-..+. .+.||+.+|-+.+-
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn-~eeta~~iARRT~~  210 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN-LEETAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC-ccchHHHHHHHhhh
Confidence            999999999999999999999999999976655666666654 5777777777 89999999987653

>KOG0505|consensus

Probab=99.75  E-value=8.8e-18  Score=169.87  Aligned_cols=185  Identities=24%  Similarity=0.304  Sum_probs=158.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy9492          40 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI  119 (584)
Q Consensus        40 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~  119 (584)
                      .+.-|+..|..+-++.|+..|++++....+ |.|+||-+|.-.+.+||++|+++|+++|..|..|.||+|.|+..|+..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~D-glTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVD-GLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCc-cchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            356688899999999999999999876655 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHH-------------hhcCChhh------------HHHHHhcCCCcccccCCCCCc
Q psy9492         120 VAYLVAKGINVNLQDRNGMTALMWSA-------------YKVFSLDP------------TRLLITFGASTTIQDKIHGNV  174 (584)
Q Consensus       120 v~~Ll~~g~~~~~~d~~g~t~Lh~Aa-------------~~~~~~~~------------~~~Ll~~ga~~~~~d~~~g~T  174 (584)
                      +++|+..|+++...+.+|..|+..+.             ..|..++.            +...+..|.+.+..+. .|-|
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~-rG~T  200 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA-RGAT  200 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc-ccch
Confidence            99999999998888887777764332             12222211            1223447999999998 6999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      .||.|+.+|..++.++|+++|.+++++|.+|+||||-|+-=+..+     +.+.|.+
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~-----~~elL~~  252 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQED-----ACELLVE  252 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHh-----HHHHHHH
Confidence            999999999999999999999999999999999999999877777     6666655

>KOG0195|consensus

Probab=99.75  E-value=1.3e-18  Score=161.91  Aligned_cols=117  Identities=33%  Similarity=0.518  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy9492          27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  106 (584)
Q Consensus        27 g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  106 (584)
                      ..|.|.-|+.|.+||||||+.|+..+++.|+.+|+.+|..... ..||||+|+.+||.++|+.|+++.+|+|+.+..|.|
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmg-ddtplhlaaahghrdivqkll~~kadvnavnehgnt  102 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMG-DDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNT  102 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCC-CCcchhhhhhcccHHHHHHHHHHhcccchhhccCCC
Confidence            5677777888888888888888888888888888888765443 568888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy9492         107 CIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS  144 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A  144 (584)
                      |||+||.-|...+.+-|+..|+.++..+..|.|||..|
T Consensus       103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            88888888888888888888888888888888888755

>KOG0195|consensus

Probab=99.74  E-value=6.8e-18  Score=157.21  Aligned_cols=153  Identities=25%  Similarity=0.343  Sum_probs=125.1

Q ss_pred             HHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q psy9492          45 AINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV  124 (584)
Q Consensus        45 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  124 (584)
                      |..|+.--|+.-++.-...+..+++.|.+||||||+.|+..+++.|+..|+.+|..+....||||+|+.+|+.++++.|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            34444444444454443444456677999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy9492         125 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  199 (584)
Q Consensus       125 ~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  199 (584)
                      ++.+|+|..+..|.||||+||.-| ...+.+-|+..|+.++..++ .|.|||..|--.-...+.+.--++|-+++
T Consensus        88 ~~kadvnavnehgntplhyacfwg-ydqiaedli~~ga~v~icnk-~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYACFWG-YDQIAEDLISCGAAVNICNK-KGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHhcccchhhccCCCchhhhhhhc-HHHHHHHHHhccceeeeccc-CCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999 57788999999999999998 99999998754322223333334666554

>KOG3676|consensus

Probab=99.74  E-value=6.2e-17  Score=171.39  Aligned_cols=187  Identities=22%  Similarity=0.233  Sum_probs=154.5

Q ss_pred             CCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCcc-c---ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy9492          27 GQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIV-D---AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL   99 (584)
Q Consensus        27 g~d~n~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~-~---~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~   99 (584)
                      ..+++.+..-|.|.||.|..+   ++.++++.|++.-... |   .-+.-.|+||||.|+.+.+.++|++|++.|||+++
T Consensus       133 ~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~a  212 (782)
T KOG3676|consen  133 DWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHA  212 (782)
T ss_pred             hhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhh
Confidence            367888889999999999984   5668999999853321 1   12234599999999999999999999999999876


Q ss_pred             C---------CC--------------CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHH
Q psy9492         100 M---------DS--------------EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL  156 (584)
Q Consensus       100 ~---------d~--------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~  156 (584)
                      +         |.              .|+.||..|+..++.+++++|+++|+|++.+|.+|+|.||..+..- ..++..+
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~-~~~My~~  291 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHF-VTEMYDL  291 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHH-HHHHHHH
Confidence            5         11              3778999999999999999999999999999999999999888764 6889999


Q ss_pred             HHhcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHhc-C-------------CCCCCCCC--CCCCHHHHHHhc
Q psy9492         157 LITFGAS--TTIQDKIHGNVALHWAIYAKNHVAITTLVSH-T-------------SSLEIPNA--QGLTPFMLLEEN  215 (584)
Q Consensus       157 Ll~~ga~--~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~-g-------------ad~~~~n~--~g~tpl~lA~~~  215 (584)
                      +++.|++  ...+++ +|-|||-+|++-|+.++.+.+++. +             -|++..|.  +-.+.|.+.+..
T Consensus       292 ~L~~ga~~l~~v~N~-qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  292 ALELGANALEHVRNN-QGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             HHhcCCCcccccccc-CCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            9999999  777887 999999999999999999999988 2             24444444  345777777665

>KOG3676|consensus

Probab=99.74  E-value=1.4e-17  Score=176.22  Aligned_cols=187  Identities=23%  Similarity=0.234  Sum_probs=156.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCC---------CcccccCCCCCCcHHHHHHHc---CCHHHHHHHHHCC----CCCCC-C
Q psy9492          38 VTLLHWAAINNRIEIMKYFISQG---------AIVDAIGGDLQATPLHWATRQ---GHLDSVVLLIQHG----ADPTL-M  100 (584)
Q Consensus        38 ~t~Lh~A~~~~~~~~v~~Ll~~g---------~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~g----ad~~~-~  100 (584)
                      ..++..|...+..+.++.++..+         .+++.++ ..|+|.||.|..+   ++-++++.|++.-    -|+-. -
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RG-a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERG-ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhcccccc-chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            36778888888888888887665         3455554 4599999999874   4558888888752    11211 2


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC---------CC--------------CCCcHHHHHHhhcCChhhHHHH
Q psy9492         101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ---------DR--------------NGMTALMWSAYKVFSLDPTRLL  157 (584)
Q Consensus       101 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------d~--------------~g~t~Lh~Aa~~~~~~~~~~~L  157 (584)
                      ...|.||||+|+.+.+.++|++|++.|+|++++         |.              -|..||-+||.-+ +.|++++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n-q~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN-QPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcC-CHHHHHHH
Confidence            346999999999999999999999999998753         22              3678999999998 89999999


Q ss_pred             HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         158 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS--LEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       158 l~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                      +++|||++.+|. +|||.||..+..-..++-..++++|++  ...+|++|.|||.+|++.|..+     +.+.+.+.
T Consensus       260 l~~gAd~~aqDS-~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~e-----mf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADPNAQDS-NGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKE-----MFQHILER  330 (782)
T ss_pred             HhcCCCCCcccc-CCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHH-----HHHHHHHh
Confidence            999999999999 999999999999999999999999999  8999999999999999999888     77666664

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=1.1e-16  Score=130.84  Aligned_cols=89  Identities=39%  Similarity=0.667  Sum_probs=76.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy9492          41 LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV  120 (584)
Q Consensus        41 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v  120 (584)
                      ||+|+..|+.+++++|++.+.+++.     |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7889999999999999998877765     67899999999999999999999999998888999999999999999999


Q ss_pred             HHHHHCCCCCCCCC
Q psy9492         121 AYLVAKGINVNLQD  134 (584)
Q Consensus       121 ~~Ll~~g~~~~~~d  134 (584)
                      ++|+++|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999998888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=1.4e-16  Score=130.16  Aligned_cols=89  Identities=39%  Similarity=0.575  Sum_probs=67.2

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHH
Q psy9492         108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA  187 (584)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~  187 (584)
                      ||.|++.|+.+++++|++.+.+++.    |.||||+|+..| +.+++++|++.|++++.+|. .|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENG-NLEIVKLLLENGADINSQDK-NGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTT-THHHHHHHHHTTTCTT-BST-TSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcC-CHHHHHHHHHhcccccccCC-CCCCHHHHHHHcCCHHH
Confidence            5777777777777777777766665    777888877777 67788888888888877776 78888888888888888


Q ss_pred             HHHHHhcCCCCCCCC
Q psy9492         188 ITTLVSHTSSLEIPN  202 (584)
Q Consensus       188 v~~Ll~~gad~~~~n  202 (584)
                      +++|+++|+|++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            888888888887765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369|consensus

Probab=99.68  E-value=2.4e-17  Score=176.58  Aligned_cols=210  Identities=23%  Similarity=0.293  Sum_probs=175.8

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCC-CCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGG-DLQATPLHWATRQGHLDSVVLLIQHG   94 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~g   94 (584)
                      ..++++.|+.+|++-..++-...|||-+|...|.+++++.|+..|+++|.+.+ +.|..||+.|...||.+.++.|++.|
T Consensus       836 r~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~g  915 (2131)
T KOG4369|consen  836 RTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPG  915 (2131)
T ss_pred             cchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhccc
Confidence            56788899999998888888889999999999999999999999999887653 45888999999999999999999999


Q ss_pred             CCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccC-CCC
Q psy9492          95 ADPTL-MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK-IHG  172 (584)
Q Consensus        95 ad~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~-~~g  172 (584)
                      -|+|. ...+.+|+|-+|+..|..+++.+|+.+.++++.+-..|-|||+-+|..| .+|+=++|+..|+|.|..-. ...
T Consensus       916 sdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgG-yvdvg~~li~~gad~nasPvp~T~  994 (2131)
T KOG4369|consen  916 SDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGG-YVDVGNLLIAAGADTNASPVPNTW  994 (2131)
T ss_pred             chhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCC-ccccchhhhhcccccccCCCCCcC
Confidence            88887 4556778999999999999999999998888888888999999888776 68888999999988876422 145


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         173 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       173 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      .|+|-+++..||.+.++.|+...|.++.+|++|.|+|.+|+..+...     ..+.|.+
T Consensus       995 dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~ls-----s~~il~~ 1048 (2131)
T KOG4369|consen  995 DTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALS-----SCPILVS 1048 (2131)
T ss_pred             CccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccc-----cchHHhh
Confidence            67888888888888888888888888888888888888888888777     6666655

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=1e-15  Score=132.83  Aligned_cols=122  Identities=39%  Similarity=0.568  Sum_probs=63.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy9492          34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  113 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~  113 (584)
                      |.+|.||||.|+..++.+++++|++.|.+.+..+. .|.+|+|.|+..++.++++.|+++|++++..+..|.||+|.|++
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34455555555555555555555555554433332 25555555555555555555555555555555555555555555


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHH
Q psy9492         114 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL  157 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~L  157 (584)
                      .++.+++++|+++|.+++..|..|.||++.|...+ +.+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG-HLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC-CHHHHHHh
Confidence            55555555555555555555555555555554443 34444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=1.8e-15  Score=131.30  Aligned_cols=121  Identities=39%  Similarity=0.570  Sum_probs=98.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      .|.||||.|+..|+.++++.|++.|.+.+.++..|.+|+|.|+..++.+++++|++.|.+++..+..|.||+|+|+..+ 
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~-   84 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG-   84 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC-
Confidence            4778888888888888888888888877777888888888888888888888888888777777778888888888777 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  192 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll  192 (584)
                      +.+++++|++.|.+.+..|. .|.||+|.|+..++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCHHHHHHhC
Confidence            67888888888877777776 7888888888888888777763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=1.5e-13  Score=132.40  Aligned_cols=126  Identities=30%  Similarity=0.371  Sum_probs=116.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCC-----HHHHHHHHHCCC---CCCCCCCCCCc
Q psy9492          68 GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH-----TRIVAYLVAKGI---NVNLQDRNGMT  139 (584)
Q Consensus        68 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~d~~g~t  139 (584)
                      +..+.+++|.++..+..++++.++..|++++.+|..|.||+|.|+..++     .++++.|++.|+   +.+.+|..|.|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~t  149 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT  149 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCc
Confidence            3447899999999999999999999999999999999999999999999     999999999999   66677999999


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       140 ~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      |||+|+..| ..+++++|++.|++++..+. .|.|++++|+..++.+.++.+++.+
T Consensus       150 pl~~A~~~~-~~~~~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         150 PLHWAALNG-DADIVELLLEAGADPNSRNS-YGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hhHHHHHcC-chHHHHHHHhcCCCCccccc-CCCcchhhhcccchHHHHHHHHhcC
Confidence            999999998 67999999999999999987 9999999999999999999999976

>KOG4214|consensus

Probab=99.52  E-value=6.3e-14  Score=108.74  Aligned_cols=102  Identities=27%  Similarity=0.378  Sum_probs=90.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHH
Q psy9492          39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR  118 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~  118 (584)
                      --..|++++|..+-|+.....|.++|..-  .|++|||+|+-.|+.+++++|+..|++++.+|+.|-|||..|+..||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~--ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY--GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh--CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            34789999999999999999998888665  3889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHH
Q psy9492         119 IVAYLVAKGINVNLQDRNGMTALM  142 (584)
Q Consensus       119 ~v~~Ll~~g~~~~~~d~~g~t~Lh  142 (584)
                      ++++|+++|+|-..+..+|.+.+.
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHh
Confidence            999999999998888888877665

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=5.1e-13  Score=128.69  Aligned_cols=132  Identities=32%  Similarity=0.406  Sum_probs=120.6

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCC
Q psy9492          28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH-----LDSVVLLIQHGA---DPTL   99 (584)
Q Consensus        28 ~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~ga---d~~~   99 (584)
                      ...+..+..+.+++|.|+..+..+.+++++..|++++..+. .|.||||+|+..|+     .++++.|++.|+   +.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            34455677789999999999999999999999999966654 59999999999999     999999999999   6666


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcC
Q psy9492         100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG  161 (584)
Q Consensus       100 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g  161 (584)
                      +|..|.||+|.|+..|+.++++.|++.|++++.++..|.|++++|+..+ ..+.++.+++.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG-RIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccc-hHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999988 788999999876

>KOG4214|consensus

Probab=99.47  E-value=1.7e-13  Score=106.38  Aligned_cols=93  Identities=28%  Similarity=0.527  Sum_probs=48.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhH
Q psy9492          75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPT  154 (584)
Q Consensus        75 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~  154 (584)
                      ..|++++|.++-|+..+..|.+++.. ..|++|||+|+..|+.+++++|+..|++++.+|..|-|||.-|+..| +.+++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEG-H~~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEG-HRDCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHh-hHHHH
Confidence            44555555555555555555444432 24555555555555555555555555555555555555555555444 44455


Q ss_pred             HHHHhcCCCcccccC
Q psy9492         155 RLLITFGASTTIQDK  169 (584)
Q Consensus       155 ~~Ll~~ga~~~~~d~  169 (584)
                      ++|++.|++-.....
T Consensus        84 klLL~~GAdrt~~~P   98 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAP   98 (117)
T ss_pred             HHHHHcCcccceeCC
Confidence            555555544444433

>KOG1710|consensus

Probab=99.42  E-value=8.3e-13  Score=123.57  Aligned_cols=121  Identities=21%  Similarity=0.194  Sum_probs=101.8

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCC
Q psy9492         105 STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN  184 (584)
Q Consensus       105 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~  184 (584)
                      ..+|.-++..++.+.+..|++.--+++.+|.+|.|+|..|+++| +.+++++|++.|+|+|......+.||||.|+.+||
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykG-nl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKG-NLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcC-cHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            46788888888888888888776668888999999999899888 78899999999999887665588899999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         185 HVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       185 ~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      .++.++|++.|+.....|.-|+|+-++|+-.|+.+     ++..+..
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~-----CV~iINN  133 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHE-----CVAIINN  133 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchH-----HHHHHhc
Confidence            99999999999999999999999999998888888     6665543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.40  E-value=2.4e-13  Score=99.98  Aligned_cols=55  Identities=29%  Similarity=0.477  Sum_probs=31.7

Q ss_pred             HHhcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy9492         157 LITFG-ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL  212 (584)
Q Consensus       157 Ll~~g-a~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA  212 (584)
                      |++.| +++|.+|. .|+||||+|+..|+.+++++|++.|+|++.+|.+|+||+++|
T Consensus         1 LL~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDK-YGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---T-TS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCC-CCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 88899998 999999999999999999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.39  E-value=1.4e-12  Score=144.94  Aligned_cols=104  Identities=24%  Similarity=0.266  Sum_probs=77.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q psy9492         107 CIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV  186 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~  186 (584)
                      .|+.|+..|+.+.++.|++.|++++.+|..|.||||+|+.+| +.+++++|++.|+++|..|. .|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g-~~eiv~~LL~~Gadvn~~d~-~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANG-HVQVVRVLLEFGADPTLLDK-DGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcHH
Confidence            466777777777777777777777777777777777777776 67777777777777777776 7777777777777777


Q ss_pred             HHHHHHhc-------CCCCCCCCCCCCCHHHHH
Q psy9492         187 AITTLVSH-------TSSLEIPNAQGLTPFMLL  212 (584)
Q Consensus       187 ~v~~Ll~~-------gad~~~~n~~g~tpl~lA  212 (584)
                      ++++|+++       |++.+..+..|.+|+..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            77777777       777777777776665443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=4.6e-12  Score=140.91  Aligned_cols=105  Identities=29%  Similarity=0.383  Sum_probs=92.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy9492          40 LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI  119 (584)
Q Consensus        40 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~  119 (584)
                      .|+.|+..|+.+.++.|+++|+++|..+.. |.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~-G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYD-GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            478899999999999999999999887654 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC-------CCCCCCCCCCCCcHHHHHH
Q psy9492         120 VAYLVAK-------GINVNLQDRNGMTALMWSA  145 (584)
Q Consensus       120 v~~Ll~~-------g~~~~~~d~~g~t~Lh~Aa  145 (584)
                      +++|+++       |++.+..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999988       7888888887887776544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.28  E-value=8.3e-12  Score=91.25  Aligned_cols=54  Identities=48%  Similarity=0.811  Sum_probs=28.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV  124 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  124 (584)
                      |.||||+|++.|+.+++++|+++|.|++.+|.+|.||||.|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345666666666666666666666666666666666666666666666665553

...

>KOG1710|consensus

Probab=99.27  E-value=2.7e-11  Score=113.60  Aligned_cols=117  Identities=23%  Similarity=0.164  Sum_probs=75.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHhCC
Q psy9492          38 VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL-MDSEGSTCIHQAAQFGH  116 (584)
Q Consensus        38 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~t~L~~A~~~g~  116 (584)
                      ..||.-++..|+.+-...|++--.++|.+++. |.++|..|+..|+.++++.|++.|+|+|. ++..+.||||.|+-+|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~s-GMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPS-GMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCC-cccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            45666666666666666666654556655544 66777777777777777777777776665 34556666776666666


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHH
Q psy9492         117 TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL  156 (584)
Q Consensus       117 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~  156 (584)
                      .++.++|++.|+..+..+.-|+|+-.+||.-| +-+++..
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG-~H~CV~i  130 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVG-HHECVAI  130 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhc-chHHHHH
Confidence            66666666666666666666666666666666 4445443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=5.4e-12  Score=92.77  Aligned_cols=49  Identities=37%  Similarity=0.626  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy9492          95 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW  143 (584)
Q Consensus        95 ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~  143 (584)
                      ++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~   55 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHY   55 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHh
Confidence            3344444444444444444444444444443344444444444444443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.23  E-value=2.6e-11  Score=88.64  Aligned_cols=54  Identities=39%  Similarity=0.655  Sum_probs=45.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          37 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      |.||||+|+..|+.+++++|+++|.+++..+. .|.||||.|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~-~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDE-DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-T-TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999999999854 4999999999999999999986

...

>KOG0515|consensus

Probab=99.17  E-value=6.6e-11  Score=119.27  Aligned_cols=118  Identities=20%  Similarity=0.173  Sum_probs=100.4

Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q psy9492         110 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT  189 (584)
Q Consensus       110 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~  189 (584)
                      -|+-.|-.++|+-.+..--|+...+.+|.|+||-|++.| +.++|++|++.|+++|+.|. +|+||||.||..++..+++
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCag-hyeIVkFLi~~ganVNa~DS-dGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAG-HYEIVKFLIEFGANVNAADS-DGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcc-hhHHHHHHHhcCCcccCccC-CCCchhhhhhhcCchHHHH
Confidence            378889999999999888889999999999999999888 89999999999999999999 9999999999999999999


Q ss_pred             HHHhcCCCCCC-CCCCCCCHHHHHHhc--CCCccchHHHHHHHHHHHh
Q psy9492         190 TLVSHTSSLEI-PNAQGLTPFMLLEEN--IGAPWLGKATVDKITELKD  234 (584)
Q Consensus       190 ~Ll~~gad~~~-~n~~g~tpl~lA~~~--~~~~~l~~~~~~~l~~~~~  234 (584)
                      .|++.|+-+-+ .-.++.||.+-+.+.  |...     +.++|...++
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~-----CsqyL~~vqe  676 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQ-----CSQYLYGVQE  676 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHH-----HHHHHHHHHH
Confidence            99999987654 456788988876554  3344     5666655333

>KOG0515|consensus

Probab=99.12  E-value=2e-10  Score=115.87  Aligned_cols=121  Identities=28%  Similarity=0.288  Sum_probs=104.2

Q ss_pred             CcHHH---HHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhc
Q psy9492          72 ATPLH---WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV  148 (584)
Q Consensus        72 ~tpLh---~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~  148 (584)
                      .+||-   =|+..|.+++|+..+..--|+...|.+|.|+||-|+..||.+||++|++.|+++|..|.+|+||||+||..+
T Consensus       548 fnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  548 FNPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             cchHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcC
Confidence            34543   378899999999999888899999999999999999999999999999999999999999999999999877


Q ss_pred             CChhhHHHHHhcCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHh
Q psy9492         149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAI--YAKNHVAITTLVS  193 (584)
Q Consensus       149 ~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~--~~g~~~~v~~Ll~  193 (584)
                       ++.+.+.|.+.|+.+-+..-.++.||..-+-  ..|..++.++|..
T Consensus       628 -nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 -NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             -chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence             7899999999999887665557888876553  4577888888854

>KOG0783|consensus

Probab=98.91  E-value=5.3e-10  Score=118.28  Aligned_cols=89  Identities=33%  Similarity=0.440  Sum_probs=82.6

Q ss_pred             CCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy9492         130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF  209 (584)
Q Consensus       130 ~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl  209 (584)
                      .+.+|..|+|+||+|+..+ ..++++.|+++|++++.+|...|+||||.|+..|+.+++-.||++|+.+.++|++|.+|+
T Consensus        45 anikD~~GR~alH~~~S~~-k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSEN-KNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccc-hhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence            7889999999999999887 688999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCc
Q psy9492         210 MLLEENIGAP  219 (584)
Q Consensus       210 ~lA~~~~~~~  219 (584)
                      ++..+.....
T Consensus       124 q~~~r~~~~~  133 (1267)
T KOG0783|consen  124 QFLSRVLSST  133 (1267)
T ss_pred             HHHhhccccc
Confidence            9988754333

>KOG0818|consensus

Probab=98.83  E-value=9.7e-09  Score=103.11  Aligned_cols=96  Identities=21%  Similarity=0.243  Sum_probs=82.6

Q ss_pred             CCCCCCCCCcH------HHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy9492         130 VNLQDRNGMTA------LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA  203 (584)
Q Consensus       130 ~~~~d~~g~t~------Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~  203 (584)
                      ...+|.+|.|+      ||-+++.| +.+..--|+..||++|.-+...|.||||+|++.|+..-+++|+-+|||+.+.|.
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~-nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~  198 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTG-NLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS  198 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcc-cHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence            34567777664      77667776 677777788899999999998999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         204 QGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       204 ~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +|+||+++|...|+.+     +.+.|.+
T Consensus       199 ~GmtP~~~AR~~gH~~-----laeRl~e  221 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHE-----LAERLVE  221 (669)
T ss_pred             CCCcHHHHHHhcCchH-----HHHHHHH
Confidence            9999999999999998     5555544

>KOG0818|consensus

Probab=98.77  E-value=2.5e-08  Score=100.29  Aligned_cols=96  Identities=32%  Similarity=0.390  Sum_probs=86.9

Q ss_pred             CCCCCCCCCcH------HHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy9492          30 VNEPDSETVTL------LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE  103 (584)
Q Consensus        30 ~n~~d~~g~t~------Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  103 (584)
                      ...+|++|.+.      ||..+..|+.+..-.|+..|+++|....+.|.||||.|++.|+..-+++|.-+|||+.+.|.+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            34567776654      899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhCCHHHHHHHHH
Q psy9492         104 GSTCIHQAAQFGHTRIVAYLVA  125 (584)
Q Consensus       104 g~t~L~~A~~~g~~~~v~~Ll~  125 (584)
                      |.||+.+|-+.||-++.+-|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999888777664

>KOG0783|consensus

Probab=98.73  E-value=5.6e-09  Score=110.72  Aligned_cols=85  Identities=25%  Similarity=0.307  Sum_probs=81.8

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHH
Q psy9492          29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI  108 (584)
Q Consensus        29 d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L  108 (584)
                      -.|.+|.-|.|+||+|+..|..+++++|+++|++++.++.+.|.||||-|+..|+++++-.|+++|+.+..+|++|.+||
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence            36888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy9492         109 HQAAQ  113 (584)
Q Consensus       109 ~~A~~  113 (584)
                      ..-++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            98877

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.3e-08  Score=62.73  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=27.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy9492         171 HGNVALHWAIYAKNHVAITTLVSHTSSLEI  200 (584)
Q Consensus       171 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~  200 (584)
                      +|+||||+|+..|+.+++++|+++|+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.65  E-value=4.1e-08  Score=63.45  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy9492         171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA  203 (584)
Q Consensus       171 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~  203 (584)
                      +|+||||+|+..|+.+++++|+++|+|++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            489999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=98.61  E-value=1.1e-07  Score=96.85  Aligned_cols=118  Identities=19%  Similarity=0.187  Sum_probs=82.3

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCC--cccccCCCCCcHHHHHHHcCCH
Q psy9492         108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS--TTIQDKIHGNVALHWAIYAKNH  185 (584)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~--~~~~d~~~g~TpLh~A~~~g~~  185 (584)
                      +..|+..++.--++-.-..|.++-.++.+.++.||+|+..| +-+++++++++|..  ++..|. .|.|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg-~~eivkyildh~p~elld~~de-~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTG-NGEIVKYILDHGPSELLDMADE-TGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcC-ChHHHHHHHhcCCHHHHHHHhh-hhhHHHHHHHHhcch
Confidence            33444444444444444456666666666666777766666 56667777666643  345555 788888888888888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         186 VAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       186 ~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                      .+.++|++.||++-..|..|+||-+-|.+.++.+     +..+|...
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~d-----laayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPD-----LAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCCch-----HHHHHhhh
Confidence            8888888888888888888888888888888888     77777653

>KOG0506|consensus

Probab=98.56  E-value=6.7e-08  Score=96.85  Aligned_cols=91  Identities=30%  Similarity=0.433  Sum_probs=63.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHH
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQ  113 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~t~L~~A~~  113 (584)
                      .++...+++|+++|++..++.+.-.|.|.+.++.+ .+|+||.||..|+++++++|++. +.|++.+|..|+|||.-|.+
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD-~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYD-DRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccc-cchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34556667777777777777777777777666554 66777777777777777777764 56777777777777777777


Q ss_pred             hCCHHHHHHHHHC
Q psy9492         114 FGHTRIVAYLVAK  126 (584)
Q Consensus       114 ~g~~~~v~~Ll~~  126 (584)
                      .+|.+++++|-+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            7777777776654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.55  E-value=1e-07  Score=59.83  Aligned_cols=28  Identities=43%  Similarity=0.735  Sum_probs=17.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPT   98 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~   98 (584)
                      |+||||+||+.|+.+++++|+++|+|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666654

>KOG0782|consensus

Probab=98.55  E-value=2.5e-07  Score=94.42  Aligned_cols=118  Identities=24%  Similarity=0.266  Sum_probs=104.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHhhcCChh
Q psy9492          75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN--VNLQDRNGMTALMWSAYKVFSLD  152 (584)
Q Consensus        75 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~Lh~Aa~~~~~~~  152 (584)
                      +.-|+..+..--++....+|.++..++.+..+.||+|+..|+.++++|++++|..  ++..|..|.|+||-||..+ +-.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~-~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR-NRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc-chH
Confidence            4456666666666677778999999999999999999999999999999999865  7888999999999999988 677


Q ss_pred             hHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy9492         153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  194 (584)
Q Consensus       153 ~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~  194 (584)
                      +.++|.+.|+.+-..|. .|.||-..|-+.|..+...+|-..
T Consensus       949 vc~~lvdagasl~ktd~-kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDS-KGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhheeccc-CCCChHHHHHhcCCchHHHHHhhh
Confidence            89999999999999998 999999999999999999888543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.49  E-value=2e-07  Score=60.21  Aligned_cols=31  Identities=52%  Similarity=0.812  Sum_probs=21.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMD  101 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d  101 (584)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5667777777777777777777776666654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=98.46  E-value=2e-07  Score=93.48  Aligned_cols=89  Identities=18%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhc-CCCcccccCCCCCcHHHHHHHc
Q psy9492         104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF-GASTTIQDKIHGNVALHWAIYA  182 (584)
Q Consensus       104 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~-ga~~~~~d~~~g~TpLh~A~~~  182 (584)
                      +...+++|++.|+...++-+.-.|.|++.+|.+.+|+||.||..| +++++++|++. +.+++..|. .|+|||.-|...
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG-~v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA~~F  583 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEG-HVEVVKFLLNACKVDPDPKDR-WGRTPLDDAKHF  583 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccC-ceeHHHHHHHHHcCCCChhhc-cCCCcchHhHhc
Confidence            344555566666666555555555666666666666666655555 45555555544 455555555 555555555555


Q ss_pred             CCHHHHHHHHhc
Q psy9492         183 KNHVAITTLVSH  194 (584)
Q Consensus       183 g~~~~v~~Ll~~  194 (584)
                      ++.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            555555555443

>KOG0705|consensus

Probab=98.31  E-value=1.9e-06  Score=88.64  Aligned_cols=88  Identities=28%  Similarity=0.461  Sum_probs=47.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          75 LHWATRQGHLDSVVLLIQHGAD----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        75 Lh~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      |.-|+....+..+.+|+.+|..    -..-+.+|+|+||+|++.|++.+.++|+=+|+|+..+|..|+|+|.+|-..| .
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~-s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG-S  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc-c
Confidence            3344555555555555555522    1223344555555555555555555555555555555555555555555555 4


Q ss_pred             hhhHHHHHhcCCC
Q psy9492         151 LDPTRLLITFGAS  163 (584)
Q Consensus       151 ~~~~~~Ll~~ga~  163 (584)
                      .+++.+|+++|+.
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            5555555555543

>KOG0522|consensus

Probab=98.26  E-value=1.8e-06  Score=88.44  Aligned_cols=80  Identities=20%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             cHHHHHHhhcCChhhHHHHHh-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Q psy9492         139 TALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  217 (584)
Q Consensus       139 t~Lh~Aa~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~  217 (584)
                      -|+|+++.......+.+.|.. .+..++..|. .|+||||+|+..|+.+.++.|+.+|||+.++|++|.+|++-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~-~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDP-PGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccC-CCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            358888877644444444333 3567788887 88999999999999999999999999999999999999999999988


Q ss_pred             Cc
Q psy9492         218 AP  219 (584)
Q Consensus       218 ~~  219 (584)
                      .+
T Consensus       101 ~q  102 (560)
T KOG0522|consen  101 EQ  102 (560)
T ss_pred             HH
Confidence            87

>KOG0705|consensus

Probab=98.23  E-value=3e-06  Score=87.16  Aligned_cols=90  Identities=26%  Similarity=0.304  Sum_probs=78.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCC----CCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHH
Q psy9492         106 TCIHQAAQFGHTRIVAYLVAKGINVN----LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY  181 (584)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~g~~~~----~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~  181 (584)
                      .-|.-|+...+...+-+|+.+|...+    .-+.+|+|+||+||.+| ++...++|+=+|+|+-..|. +|+|+|.+|-+
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~g-nVvl~QLLiWyg~dv~~rda-~g~t~l~yar~  703 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKG-NVVLAQLLIWYGVDVMARDA-HGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhc-chhHHHHHHHhCccceeccc-CCchhhhhHhh
Confidence            34667888888888999999875432    34667899999999999 89999999999999999999 99999999999


Q ss_pred             cCCHHHHHHHHhcCCC
Q psy9492         182 AKNHVAITTLVSHTSS  197 (584)
Q Consensus       182 ~g~~~~v~~Ll~~gad  197 (584)
                      .|..+++..|+++|..
T Consensus       704 a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCP  719 (749)
T ss_pred             cccHHHHHHHHHcCCC
Confidence            9999999999999964

>KOG0522|consensus

Probab=98.21  E-value=3.2e-06  Score=86.62  Aligned_cols=87  Identities=26%  Similarity=0.501  Sum_probs=72.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHH--CCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCC
Q psy9492          39 TLLHWAAINNRIEIMKYFIS--QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH  116 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~--~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~  116 (584)
                      .|+|+++...+.+-+...+.  .+..++..+.. |.||||.|+..|+.+.++.|+.+|+|+..+|..|.+|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~-g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP-GRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCC-CCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            45999999888777666443  34456655554 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHC
Q psy9492         117 TRIVAYLVAK  126 (584)
Q Consensus       117 ~~~v~~Ll~~  126 (584)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9888777764

>KOG3609|consensus

Probab=98.11  E-value=9.1e-06  Score=88.10  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=42.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCC----CcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCC
Q psy9492          41 LHWAAINNRIEIMKYFISQG----AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH  116 (584)
Q Consensus        41 Lh~A~~~~~~~~v~~Ll~~g----~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~  116 (584)
                      ...|+.+|+...|+..++..    .++|..+. .|.++|+.|+.+.|.+++++|++++...       ..+|.+|+..|.
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccCh-HhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            45566666666666555432    22333332 3666666666666666666666654332       345666666666


Q ss_pred             HHHHHHHHHC
Q psy9492         117 TRIVAYLVAK  126 (584)
Q Consensus       117 ~~~v~~Ll~~  126 (584)
                      .++++.++.+
T Consensus       101 v~~VE~ll~~  110 (822)
T KOG3609|consen  101 VPLVELLLVH  110 (822)
T ss_pred             HHHHHHHHhc
Confidence            6666666654

>KOG0520|consensus

Probab=98.04  E-value=7.2e-06  Score=90.75  Aligned_cols=127  Identities=18%  Similarity=0.211  Sum_probs=99.1

Q ss_pred             CCCCCCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHh-cCCCcccccCCCCCc
Q psy9492          97 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNV  174 (584)
Q Consensus        97 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~-~ga~~~~~d~~~g~T  174 (584)
                      .......|.+.+|+++..+..-.++.+++- |..-...|.+|...+|.+|..|  .++..+|+. .|..++..|. .|+|
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg--~ewA~ll~~~~~~ai~i~D~-~G~t  643 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALG--YEWAFLPISADGVAIDIRDR-NGWT  643 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcC--CceeEEEEeecccccccccC-CCCc
Confidence            334566788999999999999999999886 6666677777888888866554  555555544 4788999998 9999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSS------LEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad------~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      |||||+.+|+..++..|.+.|++      +...+-.|.|+.++|..+++..     +..+|.+
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~g-----ia~~lse  701 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKG-----IAGYLSE  701 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccc-----hHHHHhh
Confidence            99999999999999999988864      3445566999999999998888     5555444

>KOG0521|consensus

Probab=98.01  E-value=4.6e-06  Score=92.91  Aligned_cols=83  Identities=19%  Similarity=0.186  Sum_probs=74.4

Q ss_pred             CCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q psy9492         135 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  214 (584)
Q Consensus       135 ~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~  214 (584)
                      ..|.|+||.|+..+ ...+.++|++.|+++|..|. .|+||||.+...|+...+..|+++||++++.|.+|++|+++|.+
T Consensus       654 ~~~~s~lh~a~~~~-~~~~~e~ll~~ga~vn~~d~-~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTG-DSGAVELLLQNGADVNALDS-KGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccc-hHHHHHHHHhcCCcchhhhc-cCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            45889999999887 78889999999999999998 99999999999999999999999999999999999999999977


Q ss_pred             cCCCc
Q psy9492         215 NIGAP  219 (584)
Q Consensus       215 ~~~~~  219 (584)
                      ..+.+
T Consensus       732 ~~~~d  736 (785)
T KOG0521|consen  732 AANAD  736 (785)
T ss_pred             hcccc
Confidence            75555

>KOG2384|consensus

Probab=97.96  E-value=1.4e-05  Score=71.35  Aligned_cols=66  Identities=18%  Similarity=0.189  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         161 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT-SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       161 ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                      +.++|..|. .|+|||+.|+..|+.+++.+|+.+| +++...|..|.+++.+|.+.+...     .+..|.+.
T Consensus         2 e~~in~rD~-fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~-----fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDA-FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQA-----FVHSLFEN   68 (223)
T ss_pred             CCCccchhh-hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHH-----HHHHHHHH
Confidence            457888887 8899999998888889999999988 888888888999999988888887     77777664

>KOG0521|consensus

Probab=97.86  E-value=1.4e-05  Score=89.22  Aligned_cols=86  Identities=34%  Similarity=0.446  Sum_probs=74.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      .|.|+||.|+..|...+++.|+++|++++.+|..|.||+|.+...|+...+..|+++|++.+..|.+|.+|++.|.... 
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~-  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA-  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999987653 


Q ss_pred             ChhhHHH
Q psy9492         150 SLDPTRL  156 (584)
Q Consensus       150 ~~~~~~~  156 (584)
                      +.+.+-+
T Consensus       734 ~~d~~~l  740 (785)
T KOG0521|consen  734 NADIVLL  740 (785)
T ss_pred             cccHHHH
Confidence            4444433

>KOG3609|consensus

Probab=97.81  E-value=5.3e-05  Score=82.36  Aligned_cols=98  Identities=21%  Similarity=0.229  Sum_probs=83.5

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC----------
Q psy9492          28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP----------   97 (584)
Q Consensus        28 ~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~----------   97 (584)
                      .++|.+|.-|.++|+.|+.+.+.|++++|++.+..+       | .+|..|+..|..++|+.++.+..+-          
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------g-dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------G-DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDAN  124 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc-------c-hHHHHHHHHHHHHHHHHHHhcccccchhccccccC
Confidence            688999999999999999999999999999987654       2 4789999999999999999874322          


Q ss_pred             CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC
Q psy9492          98 TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ  133 (584)
Q Consensus        98 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  133 (584)
                      ...-.-+.||+.+||..++.++++.|+++|+.+...
T Consensus       125 ~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  125 SPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             cccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            123345789999999999999999999999887543

>KOG0511|consensus

Probab=97.68  E-value=0.00015  Score=71.44  Aligned_cols=67  Identities=27%  Similarity=0.354  Sum_probs=43.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy9492          39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  106 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  106 (584)
                      --|..||+.|+.+.|++|++.|.++|..+.. ...||.+|+..||.++|++|+++||-...-..+|..
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~f-D~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R  104 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRF-DSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR  104 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcc-cccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch
Confidence            3466777777777777777777777766554 566777777777777777777777654443334444

>KOG0520|consensus

Probab=97.67  E-value=3.2e-05  Score=85.81  Aligned_cols=124  Identities=21%  Similarity=0.228  Sum_probs=99.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHH
Q psy9492          68 GDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQDRNGMTALMWSA  145 (584)
Q Consensus        68 ~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~Lh~Aa  145 (584)
                      ...|.+.+|+++..+....++.+++- |......|.+|...+|.++ .++.+.+.+++. .|..++.+|..|+||||||+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            34488999999999999999999985 6666677888888888854 445555555544 58899999999999999999


Q ss_pred             hhcCChhhHHHHHhcCCCccc------ccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy9492         146 YKVFSLDPTRLLITFGASTTI------QDKIHGNVALHWAIYAKNHVAITTLVSH  194 (584)
Q Consensus       146 ~~~~~~~~~~~Ll~~ga~~~~------~d~~~g~TpLh~A~~~g~~~~v~~Ll~~  194 (584)
                      ..| +..++.-|.+.|++...      ... .|.|+--.|..+|+..+..+|-++
T Consensus       650 ~~G-~e~l~a~l~~lga~~~~~tdps~~~p-~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  650 FRG-REKLVASLIELGADPGAVTDPSPETP-GGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hcC-HHHHHHHHHHhccccccccCCCCCCC-CCCchhhhhhcccccchHHHHhhh
Confidence            999 78899999988776543      233 689999999999998888887665

>KOG2384|consensus

Probab=97.66  E-value=0.00011  Score=65.72  Aligned_cols=64  Identities=22%  Similarity=0.176  Sum_probs=36.6

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC
Q psy9492          62 IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK  126 (584)
Q Consensus        62 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  126 (584)
                      ++|.++.- |+||++.|+..|+-+.+.+|+++| +++...|..|.+++.+|-+.|..++++.|.+.
T Consensus         4 ~in~rD~f-gWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAF-GWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             Cccchhhh-cchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            44444433 556666666666666666666665 55555566666666666666665555555554

>KOG0511|consensus

Probab=97.63  E-value=0.00014  Score=71.69  Aligned_cols=84  Identities=24%  Similarity=0.349  Sum_probs=68.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChh
Q psy9492          73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  152 (584)
Q Consensus        73 tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~  152 (584)
                      --|..||+.|..+.|+.|++.|.++|++|....+||.+|+-.||.+++++|+++|+-.+.-.-+|... |+++.+.   .
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd---~  113 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND---R  113 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH---H
Confidence            35889999999999999999999999999999999999999999999999999998766544455554 4555432   3


Q ss_pred             hHHHHHhc
Q psy9492         153 PTRLLITF  160 (584)
Q Consensus       153 ~~~~Ll~~  160 (584)
                      +-++|+.+
T Consensus       114 IR~mllsy  121 (516)
T KOG0511|consen  114 IRRMLLSY  121 (516)
T ss_pred             HHHHHHHH
Confidence            45555554

>KOG2505|consensus

Probab=96.81  E-value=0.0023  Score=65.55  Aligned_cols=64  Identities=17%  Similarity=0.174  Sum_probs=53.3

Q ss_pred             ChhhHHHHHhcCCCcccc------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Q psy9492         150 SLDPTRLLITFGASTTIQ------DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEE  214 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~------d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~  214 (584)
                      ....+++|.+.+.+.|..      +. .-.|+||+|+..|..++|..||+.|+|+.++|..|.||.+++.+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~-ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDY-LTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCccccccccccccc-ccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            345677788877766432      32 46799999999999999999999999999999999999998873

>smart00248 ANK ankyrin repeats

Probab=96.60  E-value=0.0038  Score=37.52  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=24.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy9492         171 HGNVALHWAIYAKNHVAITTLVSHTSSLE  199 (584)
Q Consensus       171 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  199 (584)
                      .|.||+|+|+..++.++++.|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36789999999999999999998888664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.29  E-value=0.0078  Score=36.05  Aligned_cols=27  Identities=48%  Similarity=0.747  Sum_probs=14.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADP   97 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~   97 (584)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            345555555555555555555554433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.10  E-value=0.0072  Score=62.08  Aligned_cols=62  Identities=29%  Similarity=0.299  Sum_probs=46.6

Q ss_pred             HHHHHHHHHCCCCCC------CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy9492          84 LDSVVLLIQHGADPT------LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA  145 (584)
Q Consensus        84 ~~~v~~Ll~~gad~~------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa  145 (584)
                      ...++.|.+++++.|      ..+..-.|+||+|+..|..+++.+|++.|+|+..+|..|+||.+.++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            556777777766543      23444668888888888888888888888888888888888887766

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.56  E-value=0.16  Score=47.24  Aligned_cols=115  Identities=15%  Similarity=0.173  Sum_probs=77.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC----CCCCCCCCCCCCcHHHHHH-hhcC
Q psy9492          75 LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK----GINVNLQDRNGMTALMWSA-YKVF  149 (584)
Q Consensus        75 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~Lh~Aa-~~~~  149 (584)
                      |-=|+...+.+-+.-++....       .-.+++-+|...+..+++.+|+.+    ..|+-.... +.--+.++. ..|.
T Consensus       157 ledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~-~~ydieY~LS~h~a  228 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK-ELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc-chhhHHHHHhhcCC
Confidence            445666666666665554321       235788899988899999999985    122211111 111233332 3444


Q ss_pred             ChhhHHHHHhcC-CCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy9492         150 SLDPTRLLITFG-ASTTIQ--DKIHGNVALHWAIYAKNHVAITTLVSHTSS  197 (584)
Q Consensus       150 ~~~~~~~Ll~~g-a~~~~~--d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad  197 (584)
                      +..+++..+.+| +++|..  ....|.|-|.-|++.++.+++.+|+++||-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            677888888887 566643  223799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.90  E-value=0.29  Score=45.65  Aligned_cols=46  Identities=22%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CHHHHHHHHHCC-CCCCC---CCCCCCcHHHHHHhhcCChhhHHHHHhcCC
Q psy9492         116 HTRIVAYLVAKG-INVNL---QDRNGMTALMWSAYKVFSLDPTRLLITFGA  162 (584)
Q Consensus       116 ~~~~v~~Ll~~g-~~~~~---~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga  162 (584)
                      +..++++++++| +++|.   +-+.|.|.|.-|...+ +.+++.+|+++||
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~-~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYK-NSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcC-cHHHHHHHHHcCc
Confidence            345555555554 23332   2334555555555444 4555555555555

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=93.09  E-value=1.3  Score=44.71  Aligned_cols=127  Identities=17%  Similarity=0.106  Sum_probs=75.2

Q ss_pred             CCcCcccccccccccCCCCCcCccCCccccCCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcc
Q psy9492         381 TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCFVLYGIAKY-WKSKCQF  459 (584)
Q Consensus       381 ~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DHhC~w~~ncIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~-~~~~~~~  459 (584)
                      +.++...|..|..--...-|||..-|.||-+-.|-           =.-.|++++.+..+..+......... +......
T Consensus       119 KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r-----------~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (309)
T COG5273         119 KPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYR-----------FFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDT  187 (309)
T ss_pred             cCCCCccchhhcchhhccCccCcccccccCcchHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCh
Confidence            45677899999999999999999999999986663           34578888865554444433333333 2222111


Q ss_pred             ccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHhhcc
Q psy9492         460 QLSHEREVMFVVWDMLQCDGWVGFILLNAFVHAIWITVLLSCQLYQIISLGMTTNERMNANR  521 (584)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~~i~~~n~Tt~E~~~~~r  521 (584)
                      ......-.+.  +..+....+++.+.++......+.-.....+.+++. ++.++-|...-.|
T Consensus       188 ~~~~~~li~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~-~~~~~~~~~~~~~  246 (309)
T COG5273         188 SLAICFLIFG--CSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQIS-RGGSTLEFFPLCR  246 (309)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-cceecccccchhc
Confidence            1110111111  111122224444455555566666677778888764 5888877655333

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.42  E-value=1.6  Score=39.63  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=86.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHH
Q psy9492          39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR  118 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~  118 (584)
                      ..+..|++.+..++++..-+...+.    ...+++..-.||+..+.++|+++-+.   ...  .+-.+....|....+.+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchh
Confidence            4678899999999988876654322    12256677789999999999998432   222  12335567787777776


Q ss_pred             HHH----HHHHCCCCCCCCCCC--CCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492         119 IVA----YLVAKGINVNLQDRN--GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  192 (584)
Q Consensus       119 ~v~----~Ll~~g~~~~~~d~~--g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll  192 (584)
                      +..    .+.++..+-+..|..  -..-|.+|+.+| -...+.-.+++|.+++       .+.|-.|+..++..++..++
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kg-ll~F~letlkygg~~~-------~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKG-LLPFVLETLKYGGNVD-------IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCC-CHHHHHHHHHcCCccc-------HHHHHHHHHhhHHHHHHHhh
Confidence            532    223332222111110  113456788887 5666766777776653       27888888888888887775


Q ss_pred             h
Q psy9492         193 S  193 (584)
Q Consensus       193 ~  193 (584)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.21  E-value=1.9  Score=33.41  Aligned_cols=47  Identities=17%  Similarity=0.456  Sum_probs=29.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC
Q psy9492          73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK  126 (584)
Q Consensus        73 tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  126 (584)
                      ..+..|+..|+.++++.+++.+ .++      ...+..|+...+.+++++|+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456677777777777666554 111      3456677777777777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=83.88  E-value=0.6  Score=27.02  Aligned_cols=21  Identities=24%  Similarity=0.689  Sum_probs=18.8

Q ss_pred             cccccccccCCCCCcCccCCc
Q psy9492         387 FCSTCLVRKPIRSKHCSICNR  407 (584)
Q Consensus       387 ~C~~c~~~kp~Rs~hC~~c~~  407 (584)
                      +|+.|...-++.++.|+.||.
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~   21 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGT   21 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCC
Confidence            589999999999999999985

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.80  E-value=6.8  Score=35.69  Aligned_cols=53  Identities=15%  Similarity=0.299  Sum_probs=36.1

Q ss_pred             CCcCcccccccccccCCCCCcCccCCccccCCcccccccccccccCCHHHHHHHHHHHHHHHHH
Q psy9492         381 TFEPLSFCSTCLVRKPIRSKHCSICNRCVAKFDHHCPWVGNCIGAKNHKYFVGYISSLLFMCCF  444 (584)
Q Consensus       381 ~~~~~~~C~~c~~~kp~Rs~hC~~c~~cv~~~DHhC~w~~ncIG~~N~~~F~~fl~~~~~~~~~  444 (584)
                      ...+.++|..|..-...+-|||..-|.||.+..|.           -.-.|+++.....+....
T Consensus        58 kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~-----------~F~~fl~~~~~~~~~~~~  110 (174)
T PF01529_consen   58 KPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHR-----------YFLLFLLYLCLYCLYFFI  110 (174)
T ss_pred             CCCcceeccccccccccccccchhhccccccccHH-----------HHHHHHHHHHHHHHHHHH
Confidence            34566788888888888888888888888877663           233566665544444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>KOG1311|consensus

Probab=82.50  E-value=5.1  Score=40.34  Aligned_cols=51  Identities=20%  Similarity=0.403  Sum_probs=37.8

Q ss_pred             CCCcCccCCccccCCcccccccccccccCC-----------HHHHHHHHHHHHHHHHHHHHH
Q psy9492         398 RSKHCSICNRCVAKFDHHCPWVGNCIGAKN-----------HKYFVGYISSLLFMCCFVLYG  448 (584)
Q Consensus       398 Rs~hC~~c~~cv~~~DHhC~w~~ncIG~~N-----------~~~F~~fl~~~~~~~~~~~~~  448 (584)
                      +.|+|..|+..+...-|||+.=|+||-+.=           +|-+-.|+.+++...+..++.
T Consensus       112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~  173 (299)
T KOG1311|consen  112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLA  173 (299)
T ss_pred             ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999999999863           456778885555333333333

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=81.56  E-value=4.4  Score=36.90  Aligned_cols=111  Identities=16%  Similarity=0.089  Sum_probs=59.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCCCCCCCC--CChHH
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV----LLIQHGADPTLMDSE--GSTCI  108 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~----~Ll~~gad~~~~d~~--g~t~L  108 (584)
                      ....+..-.||+..+.|+|+|+-++ ..+..     -.+-.-.|....+.+...    .+.++...-...|..  -..-|
T Consensus        74 ~~~q~LFElAC~~qkydiV~WI~qn-L~i~~-----~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl  147 (192)
T PF03158_consen   74 YLNQELFELACEEQKYDIVKWIGQN-LHIYN-----PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHL  147 (192)
T ss_pred             hHHHHHHHHHHHHccccHHHHHhhc-cCCCC-----chhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence            3456788899999999999998332 22211     123344566666555421    222322111011110  01224


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHH
Q psy9492         109 HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI  158 (584)
Q Consensus       109 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll  158 (584)
                      ..|+..|-...+.-.+++|.+++.      ++|..|+..+ +..++.+++
T Consensus       148 ~~a~~kgll~F~letlkygg~~~~------~vls~Av~yn-hRkIL~yfi  190 (192)
T PF03158_consen  148 EKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYN-HRKILDYFI  190 (192)
T ss_pred             HHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhh-HHHHHHHhh
Confidence            556666777666666666665543      5666666655 455555544

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	584
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-65
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-22
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-21
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-20
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-19
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-18
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-18
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-12
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-18
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-17
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-17
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-17
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-17
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		9e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-13
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-16
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-12
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-15
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-13
1uoh_A	226	Human Gankyrin Length = 226		3e-13
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-13
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-13
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-12
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-12
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-10
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		8e-10
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-09
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		6e-09
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		8e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		8e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-09
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		4e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-09
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		9e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		9e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-09
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		7e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		9e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-07
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		7e-07
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-06
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-06
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-06
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		9e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-04

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 149/193 (77%)
Query: 22  KCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQ 81
           + VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQ
Sbjct: 27  ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86
Query: 82  GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           GHL  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT L
Sbjct: 87  GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIP 201
           MW+AY+  S+DPTRLL+TF  S  + DK H N ALHWA+ A N   I+ L+   ++++  
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206
Query: 202 NAQGLTPFMLLEE 214
           N +G +   L ++
Sbjct: 207 NIKGESALDLAKQ 219

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/122 (46%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V   +E G DVN  DS+  T LH+AA     EI+K  IS+GA V+A   D + TPLH+A 
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAA 78
Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           ++GH + V LLI  GAD    DS+G T +H AA+ GH  IV  L++KG +VN  D +G T
Sbjct: 79  KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRT 138
Query: 140 AL 141
            L
Sbjct: 139 PL 140

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A   G+ D V  LI++GAD    DS+G T +H AA+ GH  IV  L++KG +VN +D +G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
            T L ++A K    +  +LLI+ GA    +D   G   LH+A    +   +  L+S  + 
Sbjct: 71  RTPLHYAA-KEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 198 LEIPNAQGLTPFMLLEEN 215
           +   ++ G TP  L  E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V   +E G DVN  DS+  T LH AA N   E++K  IS+GA V+A   D + TPLH A 
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAA 78
Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
             GH + V LLI  GAD    DS+G T +H AA+ GH  +V  L++KG +VN  D +G T
Sbjct: 79  ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT 138
Query: 140 AL 141
            L
Sbjct: 139 PL 140

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A   G+ D V  LI++GAD    DS+G T +H AA+ GH  +V  L++KG +VN +D +G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
            T L  +A      +  +LLI+ GA    +D   G   LH A    +   +  L+S  + 
Sbjct: 71  RTPLHHAAENGHK-EVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 198 LEIPNAQGLTPFMLLEEN 215
           +   ++ G TP  L  E+
Sbjct: 129 VNTSDSDGRTPLDLAREH 146

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V   +E G D N  DS+  T LH+AA N   EI+K  +S+GA  +A   D + TPLH+A 
Sbjct: 20  VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAA 78
Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
             GH + V LL+  GADP   DS+G T +H AA+ GH  IV  L++KG + N  D +G T
Sbjct: 79  ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRT 138
Query: 140 AL 141
            L
Sbjct: 139 PL 140

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A   G+ D V  L+++GADP   DS+G T +H AA+ GH  IV  L++KG + N +D +G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
            T L ++A      +  +LL++ GA    +D   G   LH+A    +   +  L+S  + 
Sbjct: 71  RTPLHYAAENGHK-EIVKLLLSKGADPNAKDS-DGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 198 LEIPNAQGLTPFMLLEEN 215
               ++ G TP  L  E+
Sbjct: 129 PNTSDSDGRTPLDLAREH 146

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V   +E G DVN  DS+  T LH AA N   E++K  +SQGA  +A   D + TPLH A 
Sbjct: 20  VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAA 78
Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
             GH + V LL+  GADP   DS+G T +H AA+ GH  +V  L+++G + N  D +G T
Sbjct: 79  ENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRT 138
Query: 140 AL 141
            L
Sbjct: 139 PL 140

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 35/138 (25%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A   G+ D V  L+++GAD    DS+G T +H AA+ GH  +V  L+++G + N +D +G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
            T                                    LH A    +   +  L+S  + 
Sbjct: 71  KTP-----------------------------------LHLAAENGHKEVVKLLLSQGAD 95
Query: 198 LEIPNAQGLTPFMLLEEN 215
               ++ G TP  L  EN
Sbjct: 96  PNAKDSDGKTPLHLAAEN 113

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 85
           G DVN  D++  T LH AA N  +EI++  +  GA V+A   DL   TPLH A   GHL+
Sbjct: 37  GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA--SDLTGITPLHLAAATGHLE 94
Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
            V +L++HGAD    D++G T +H AA++GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 67  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
           G DL    L  A R G  D V +L+ +GAD    D++G T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G +VN  D  G+T L  +A     L+   +L+  GA     D   G+  LH A    +  
Sbjct: 70  GADVNASDLTGITPLHLAA-ATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
            +  L+ H + +   +  G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 41  LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
           LH AA    ++I    +  GA +D    D Q TPL  A    HL++V  LI+ GA     
Sbjct: 15  LHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
           D+EGSTC+H AA+ GH  +V YL++ G ++VN QD  G T ++W A +   +D  +LL++
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW-ATEYKHVDLVKLLLS 132
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 209
            G+   I+D    N+ LHWA ++        L++    L   N  G +P 
Sbjct: 133 KGSDINIRDN-EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D+  +T LH AA    +EI++  +  GA V+AI   + +TPLH A   GHL+ 
Sbjct: 37  GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L++HGAD   +D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 62  IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ AT      PLH A   GHL+ V +L++HGAD   +D  GST +H AA  G
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           H  IV  L+  G +VN  D  G T L  +A  +  L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D+   T LH AA +  +EI++  +  GA VDA       TPLH A   GHL+ 
Sbjct: 37  GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVFGYTPLHLAAYWGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD   MDS+G T +H AA++G+  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 67  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
           G DL    L  A R G  D V +L+ +GAD    D+ G+T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G +V+  D  G T L  +AY    L+   +L+  GA     D   G   LH A       
Sbjct: 70  GADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
            +  L+ H + +   +  G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 85
           G DVN  D+  +T LH AA    +EI++  +  GA V+AI  D+  +TPLH A   GHL+
Sbjct: 37  GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIXGSTPLHLAALIGHLE 94
Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
            V +L++HGAD   +D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 62  IVDAIGGDLQAT------PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ AT      PLH A   GHL+ V +L++HGAD   +D  GST +H AA  G
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           H  IV  L+  G +VN  D  G T L  +A  +  L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKHGADVNAVDTWGDTPLHLAAI-MGHLEIVEVLLKHGADVNAQDK 144

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQG 82
           +  G DVN  D+  +T LH AA++  +EI++  +  GA VDA   D+   TPLH A   G
Sbjct: 34  IANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA--ADVYGFTPLHLAAMTG 91
Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           HL+ V +L+++GAD    D  GST +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 67  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
           G DL    L  A R G  D V +LI +GAD   +D+ G T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G +V+  D  G T L  +A     L+   +L+ +GA     D + G+  LH A    +  
Sbjct: 70  GADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
            +  L+ + + +   +  G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D +  T LH AA    +EI++  +  GA V+A   D   TPLH A R+GHL+ 
Sbjct: 37  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L++ GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 67  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
           G DL    L  A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G +VN +D++G T L  +A +   L+   +L+  GA    +DK  G   LH A    +  
Sbjct: 70  GADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
            +  L+   + +   +  G T F
Sbjct: 128 IVEVLLKAGADVNAQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D+   T LH AA N  +EI++  +  GA V+A+      TPL  A   GHL+ 
Sbjct: 37  GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD    D EG T +H AA FGH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD   +D  G T +  AA FG
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS-LDPTRLLITFGASTTIQDK 169
           H  IV  L+  G +VN  D  G T L  +A  +F  L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKNGADVNANDMEGHTPLHLAA--MFGHLEIVEVLLKNGADVNAQDK 144

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D    T LH AA    +EI++  +  GA V+A    L  TPLH A R+GHL+ 
Sbjct: 37  GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD    DS G T +H AA+ GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD    DS G T +H AA+ G
Sbjct: 32  ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           H  IV  L+  G +VN  D +G T L  +A K   L+   +L+  GA    QDK
Sbjct: 92  HLEIVEVLLKNGADVNASDSHGFTPLHLAA-KRGHLEIVEVLLKNGADVNAQDK 144

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D +  T LH AA    +EI++  +  GA V+A   D   TPLH A R+GHL+ 
Sbjct: 25  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           V +L++ GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G T
Sbjct: 84  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  G +VN +D++G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
            T L  +A +   L+   +L+  GA    +DK  G   LH A    +   +  L+   + 
Sbjct: 69  YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 198 LEIPNAQGLTPFML 211
           +   +  G TPF L
Sbjct: 127 VNAQDKFGKTPFDL 140

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D +  T LH AA    +EI++  +  GA V+A   D   TPLH A R+GHL+ 
Sbjct: 25  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEI 83
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           V +L++ GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G T
Sbjct: 84  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  G +VN +D++G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
            T L  +A +   L+   +L+  GA    +DK  G   LH A    +   +  L+   + 
Sbjct: 69  YTPLHLAA-REGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 198 LEIPNAQGLTPFMLLEEN 215
           +   +  G TPF L  +N
Sbjct: 127 VNAQDKFGKTPFDLAIDN 144

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D    T LH AAI   +EI++  +  GA V+A    +  TPLH A   GHL+ 
Sbjct: 37  GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-ADKMGDTPLHLAALYGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD    D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 67  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
           G DL    L  A R G  D V +L+ +GAD    D  G T +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G +VN  D+ G T L  +A     L+   +L+  GA     D  +G   LH A  A +  
Sbjct: 70  GADVNAADKMGDTPLHLAAL-YGHLEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
            +  L+ + + +   +  G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D   +T LH AA N ++EI++  +  GA V+A       TPLH A   GHL+ 
Sbjct: 29  GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-SDSAGITPLHLAAYDGHLEI 87
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L++HGAD    D  G T +H AA  G   IV  L+  G +VN QD  G+TA 
Sbjct: 88  VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 65  AIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
           A G DL    L  A   G  D V +L+ +GAD    D  G T +H AA  G   IV  L+
Sbjct: 1   AFGQDLGKKLLE-AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 125 AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 184
             G +VN  D  G+T L  +AY    L+   +L+  GA     D+  G   LH A  +  
Sbjct: 60  KNGADVNASDSAGITPLHLAAYD-GHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQ 117
Query: 185 HVAITTLVSHTSSLEIPNAQGLTPF 209
              +  L+ H + +   +A GLT F
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLTAF 142

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQGHLD 85
           G DVN  D+   T LH AA    +EI++  +  GA V+A+  D   +TPLH A ++GHL+
Sbjct: 37  GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAAKRGHLE 94
Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
            V +L+++GAD    D+ GST +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH A R GHL+ V +L+++GAD   +D  GST +H AA+ G
Sbjct: 32  ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           H  IV  L+  G +VN  D  G T L  +A     L+   +L+ +GA    QDK
Sbjct: 92  HLEIVEVLLKYGADVNADDTIGSTPLHLAA-DTGHLEIVEVLLKYGADVNAQDK 144

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D    T LH AA    +EI++  +  GA V+A   +  ATPLH A   GHL+ 
Sbjct: 37  GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA-WDNYGATPLHLAADNGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L++HGAD    D EG T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 67  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
           G DL    L  A R G  D V +L+ +GAD    D  G T +H AA+ GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G +VN  D  G T L  +A     L+   +L+  GA    +D   G   LH A Y  +  
Sbjct: 70  GADVNAWDNYGATPLHLAADN-GHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
            +  L+ + + +   +  G T F
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAF 150

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D    T LH AA    +EI++  +  GA V+A    L  TPLH A  +GHL+ 
Sbjct: 37  GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-DDSLGVTPLHLAADRGHLEV 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD    D  G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD    DS G T +H AA  G
Sbjct: 32  ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           H  +V  L+  G +VN  D NG T L  +A  +  L+   +L+  GA    QDK
Sbjct: 92  HLEVVEVLLKNGADVNANDHNGFTPLHLAA-NIGHLEIVEVLLKHGADVNAQDK 144

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D +  T LH AA     EI++  +  GA V+A   D   TPLH A   GHL+ 
Sbjct: 37  GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD-GWTPLHLAADNGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD    D+ G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 67  GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK 126
           G DL    L  A R G  D V +L+ +GAD    D +GST +H AA  GH  IV  L+  
Sbjct: 11  GSDLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G +VN +D +G T L  +A     L+   +L+ +GA    QD  +G   LH A    +  
Sbjct: 70  GADVNARDTDGWTPLHLAADN-GHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLE 127
Query: 187 AITTLVSHTSSLEIPNAQGLTPF 209
            +  L+ H + +   +  G T F
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D    T LH AA    +EI++  +  GA V+A    L +TPLH A   GHL+ 
Sbjct: 37  GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD-TLGSTPLHLAAHFGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD    D  G T +H AA  GH  IV  L+  G +VN QD+ G TA 
Sbjct: 96  VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 44  AAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDS 102
           AA   R + ++  ++ GA V+A   D+   TPLH A   GHL+ V +L+++GAD    D+
Sbjct: 21  AARAGRDDEVRILMANGADVNA--ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
            GST +H AA FGH  IV  L+  G +VN +D NG+T L  +A +   L+   +L+ +GA
Sbjct: 79  LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR-GHLEIVEVLLKYGA 137
Query: 163 STTIQDKIHGNVALHWAIYAKN 184
               QDK  G  A   +I   N
Sbjct: 138 DVNAQDKF-GKTAFDISINNGN 158

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLD 85
           G DVN  D   +T LH    N  +EI++  +   A V+A   D    TPLH A  +GHL+
Sbjct: 37  GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA--SDKSGWTPLHLAAYRGHLE 94
Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
            V +L+++GAD   MD +G T +H AA+ GH  IV  L+  G +VN QD+ G TA 
Sbjct: 95  IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH     GHL+ + +L+++ AD    D  G T +H AA  G
Sbjct: 32  ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           H  IV  L+  G +VN  D  G T L  +A +   L+   +L+ +GA    QDK
Sbjct: 92  HLEIVEVLLKYGADVNAMDYQGYTPLHLAA-EDGHLEIVEVLLKYGADVNAQDK 144

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +EAG DVN  D    T LH AA N  +E++K  +  GA V+A   + + TPLH A R GH
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80
Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
           L+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G
Sbjct: 81  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 191
           +D+NG T L  +A +   L+  +LL+  GA    +DK +G   LH A  A+N H+ +  L
Sbjct: 64  KDKNGRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLA--ARNGHLEVVKL 119
Query: 192 V 192
           +
Sbjct: 120 L 120

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G D N  D    T LH AA    +EI++  +  GA V+A+  +   TPLH A   GHL+ 
Sbjct: 25  GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEI 83
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           V +L+++GAD    D+ G T ++ AA +GH  IV  L+  G +VN QD+ G TA 
Sbjct: 84  VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D  A      TPLH A   GHL+ V +L+++GAD   +D+ G+T +H AA  G
Sbjct: 20  ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           H  IV  L+  G +VN +D  G+T L  +AY    L+   +L+  GA    QDK
Sbjct: 80  HLEIVEVLLKYGADVNAKDATGITPLYLAAY-WGHLEIVEVLLKHGADVNAQDK 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 53  MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    DS G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G  VN+ D    + LH AA   R EI+K  + +GA V+A+  +   TPLH+A  +   + 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEI 121
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
            V+L++ GA+P   D   +T +H+AA  G+ +++  L+    + N+QD  G T L   A 
Sbjct: 122 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL-AC 180
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
               ++  +LL++ GAS  I++K
Sbjct: 181 DEERVEEAKLLVSQGASIYIENK 203

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G  VN+ D    + LH AA   R EI+K  + +GA V+A+  +   TPLH+A  +   + 
Sbjct: 64  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEI 122
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
            V+L++ GA+P   D   +T +H+AA  G+ +++  L+    + N+QD  G T L   A 
Sbjct: 123 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL-AC 181
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
               ++  +LL++ GAS  I++K
Sbjct: 182 DEERVEEAKLLVSQGASIYIENK 204

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 86/191 (45%), Gaps = 3/191 (1%)
Query: 19  FVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWA 78
            V   ++ G   N  + +  T LH AA     E+ KY +   A V+A   D Q TPLH A
Sbjct: 29  IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCA 87
Query: 79  TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 138
            R GH + V LL+++ A+P L  + G T +H AA+ GH   V  L+ K  +     + G 
Sbjct: 88  ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF 147
Query: 139 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 198
           T L  +A K   +    LL+   A      K +G   LH A++  N   +  L+    S 
Sbjct: 148 TPLHVAA-KYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 199 EIPNAQGLTPF 209
             P   G TP 
Sbjct: 206 HSPAWNGYTPL 216

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G  VN+ D    + LH AA   R EI+K  + +GA V+A+  +   TPLH+A  +   + 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEI 121
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
            V+L++ GA+P   D   +T +H+AA  G+ ++V  L+    + N+QD  G T L   A 
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL-AC 180
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
               ++  + L+T GAS  I++K
Sbjct: 181 DEERVEEAKFLVTQGASIYIENK 203

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
           +D+NG T L  +A +   L+  +LL+  GA
Sbjct: 64  KDKNGRTPLHLAA-RNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A +   L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGAD 60
Query: 164 TTIQDKIHGNVALHWAIYAKN-HVAITTLV 192
              +DK +G   LH A  A+N H+ +  L+
Sbjct: 61  VNAKDK-NGRTPLHLA--ARNGHLEVVKLL 87

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 53  MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    D  G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 53  MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
           ++  ++ GA V+A+  D   TPLH A ++GHL+ V +L++HGAD    D  G T +H AA
Sbjct: 30  VRILMANGADVNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH A    HL+ V +L++HGAD    D++GST +H AA FG
Sbjct: 32  ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           + K   +G  VN    +  + LH AA++ R +++   +  GA   A   D QA PLH A 
Sbjct: 69  LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD-QAVPLHLAC 127
Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           +QGH   V  L+   A P   D  G+T +  A   GH  +VA L+  G ++N  +  G T
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 140 ALMWSAYK--VFSLDPTRLLITFGASTTIQDK 169
           AL  +  +  VF ++   LL+  GAS  + +K
Sbjct: 188 ALHEAVIEKHVFVVE---LLLLHGASVQVLNK 216

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G  VN+ D    + LH AA     EI+K  + +GA V+A+  +   TPLH+A  +   + 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEI 121
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
            V+L++ GA+P   D   +T +H+AA  G+ ++V  L+    + N+QD  G T L   A 
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL-AC 180
Query: 147 KVFSLDPTRLLITFGASTTIQDK 169
               ++  + L+T GAS  I++K
Sbjct: 181 DEERVEEAKFLVTQGASIYIENK 203

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 53  MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
           ++  ++ GA V+A+  D   TPLH A + GHL+ V +L+++GAD    D+ G T +H AA
Sbjct: 30  VRILMANGADVNALDED-GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
             GH  IV  L+  G +VN QD+ G TA 
Sbjct: 89  IRGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH AA N   E +K  +S+GA V+A   D   TPLH A + GH + V LL+  GAD  
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
               +G+T  H A + GH  IV  L AKG +VN
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWA 78
           + K VE    + + D E  T L WA  NNR+ I +  +S+G+ V+    D    TPL W+
Sbjct: 51  IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWS 108
Query: 79  TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 138
              G+ +    L++HGA+    + EG T +  A+++G + IV  L+  G +++ +D  G+
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL 168
Query: 139 TA 140
           TA
Sbjct: 169 TA 170

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G DVN  D   +T LH AA+N+ +EI++  +  GA V+AI   +  TPLH     GHL+ 
Sbjct: 37  GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA-IGETPLHLVAMYGHLEI 95
Query: 87  VVLLIQHGADPTLMDSEGST 106
           V +L++HGAD    D  G T
Sbjct: 96  VEVLLKHGADVNAQDKFGKT 115

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH A    HL+ V +L+++GAD   +D+ G T +H  A +G
Sbjct: 32  ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPL+ AT  GHL+ V +L+++GAD   +D+ G T +H AA  G
Sbjct: 32  ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
           H  I   L+  G +VN QD+ G TA 
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAF 117

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSV 87
           D+N+ D    + LHWA    R  +++  I +GA ++ +  GD   TPLH A   GH D V
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDIV 83
Query: 88  VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
             L+Q+ AD   ++  G+  +H A  +G  ++   LVA G  V++ ++ G
Sbjct: 84  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 28  QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 83
           Q VN  D E    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH
Sbjct: 33  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 89
Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L  
Sbjct: 90  YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 148
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
                        L+  G  T IQD + G+ AL
Sbjct: 149 -------------LVKDG-DTDIQDLLRGDAAL 167

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 28  QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 83
           Q VN  D E    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH
Sbjct: 31  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 87
Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L  
Sbjct: 88  YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 146
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
                        L+  G  T IQD + G+ AL
Sbjct: 147 -------------LVKDG-DTDIQDLLRGDAAL 165

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 28  QDVNEPDSE--TVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGH 83
           Q VN  D E    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH
Sbjct: 35  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG---LVPLHNACSYGH 91
Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L  
Sbjct: 92  YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD- 150
Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
                        L+  G  T IQD + G+ AL
Sbjct: 151 -------------LVKDG-DTDIQDLLRGDAAL 169

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 28  QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDS 86
            D+N+ D    + LHWA    R  +++  I +GA ++ +  GD   TPLH A   GH D 
Sbjct: 30  NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD--DTPLHLAASHGHRDI 87
Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           V  L+Q+ AD   ++  G+  +H A  +G  ++   LVA G  V++ ++ G
Sbjct: 88  VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           +P+H A R G LD++ +L++HGAD  + D  G+  IH A Q GHT +V++L A+  +++ 
Sbjct: 70  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 128
Query: 133 QDRNGMTAL 141
           +D  G+T L
Sbjct: 129 RDARGLTPL 137

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
           LL +    P  ++  G T + Q   FG T I   L+ +G + N+QD +G + +  +A   
Sbjct: 21  LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
           F LD  ++L+  GA   + D   G + +H A+  + H A+ + ++  S L   +A+GLTP
Sbjct: 80  F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 136
Query: 209 FML 211
             L
Sbjct: 137 LEL 139

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           +P+H A R G LD++ +L++HGAD  + D  G+  IH A Q GHT +V++L A+  +++ 
Sbjct: 76  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHR 134
Query: 133 QDRNGMTAL 141
           +D  G+T L
Sbjct: 135 RDARGLTPL 143

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
           LL +    P  ++  G T + Q   FG T I   L+ +G + N+QD +G + +  +A   
Sbjct: 27  LLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 85
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
           F LD  ++L+  GA   + D   G + +H A+  + H A+ + ++  S L   +A+GLTP
Sbjct: 86  F-LDTLKVLVEHGADVNVPDGT-GALPIHLAV-QEGHTAVVSFLAAESDLHRRDARGLTP 142
Query: 209 FML 211
             L
Sbjct: 143 LEL 145

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 56  FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
            + QGA   + DA G     +P+H A R G LD++ +L++HGAD   +DS GS  IH A 
Sbjct: 62  LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           + GH+ +V++L  +  +++ +D +G+T L
Sbjct: 118 REGHSSVVSFLAPES-DLHHRDASGLTPL 145

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
           LL +    P  ++  G T + Q   FG   +   L+ +G + N+QD +G + +  +A   
Sbjct: 29  LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 87
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
           F LD  ++L+  GA     D   G++ +H AI  + H ++ + ++  S L   +A GLTP
Sbjct: 88  F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 144
Query: 209 FMLLEE 214
             L  +
Sbjct: 145 LELARQ 150

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 56  FISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
            + QGA   + DA G     +P+H A R G LD++ +L++HGAD   +DS GS  IH A 
Sbjct: 60  LLKQGASPNVQDASG----TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           + GH+ +V++L  +  +++ +D +G+T L
Sbjct: 116 REGHSSVVSFLAPES-DLHHRDASGLTPL 143

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
           LL +    P  ++  G T + Q   FG   +   L+ +G + N+QD +G + +  +A   
Sbjct: 27  LLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 85
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
           F LD  ++L+  GA     D   G++ +H AI  + H ++ + ++  S L   +A GLTP
Sbjct: 86  F-LDTLKVLVEHGADVNALDST-GSLPIHLAI-REGHSSVVSFLAPESDLHHRDASGLTP 142
Query: 209 FMLLEE 214
             L  +
Sbjct: 143 LELARQ 148

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 62  IVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG 115
           I+ A G D+ A      TPLH A   GHL+ V +L+++GAD     + G T +H AA   
Sbjct: 32  ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 116 HTRIVAYLVAKGINVNLQDRNGMTAL 141
           H  IV  L+  G +VN QD+ G TA 
Sbjct: 92  HLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 120/279 (43%), Gaps = 56/279 (20%)
Query: 13  FELTKVFVGKC-----------VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 61
           F+   VF+  C           +E G D+N  + + +T LH A I++ ++++K+ +  GA
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 62  IVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIH----------- 109
            ++    D +   PLH A   G+LD    LI  GA    ++SEG T +            
Sbjct: 98  NINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 110 -----------QAAQFGHTRIV-----AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
                      +AA+    RI+      +L +  IN     ++G TAL  +A K ++ + 
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-EV 214
Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE 213
            +LLI       I+D   G   LH A +     A   LV +   +E  N  G T F + +
Sbjct: 215 LKLLIQARYDVNIKD-YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273
Query: 214 ENIGAPWLGKATVDKITELKDHYNTQQNIIHRFSKSKTT 252
           E+I    LG      + EL+     +QN++H   + K +
Sbjct: 274 EDI----LG-----YLEELQ----KKQNLLHSEKREKKS 299

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 98  YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 131

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 54  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 114 YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 147

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPL WA   G +  V  L+Q+GADP L+     + +  A   G+T IV  L+  G++VN 
Sbjct: 36  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
            D NG T L+++ +    +   ++L+  GA  TI+
Sbjct: 96  YDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIE 129

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 36  ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 95
           E   LL  A  N  +++++  +  GA V+    +   TPLH A +    D V LL++HGA
Sbjct: 24  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 96  DPTLMDSEGS---------------------------------TCIHQAAQFGHTRIVAY 122
           DP L    G+                                 T   +AA +G  + + +
Sbjct: 84  DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 123 LVAKGINVNL-------QDR---NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 172
           L  +G NVNL       Q+R    G TALM +A K        LL   GA     D +  
Sbjct: 144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203
Query: 173 NVALHWAIYAKNH--VAIT-TLVSHTSSLEIPNAQGLTPFML 211
           N  +H  + + +    AIT  L+ H + + +   +G TP +L
Sbjct: 204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 245

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPL WA+  G +++V  L++ GADP ++  E  + +  A+  G+T IV  L+ + +++N+
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 133 QDRNGMTALMWSAY 146
            D NG T L+++ +
Sbjct: 98  YDWNGGTPLLYAVH 111

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 46/218 (21%)
Query: 40  LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 99
           LL  A  N  +++++  +  GA V+    +   TPLH A +    D V LL++HGADP L
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 100 MDSEGS---------------------------------TCIHQAAQFGHTRIVAYLVAK 126
               G+                                 T   +AA +G  + + +L  +
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 127 GINVNL-------QDR---NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
           G NVNL       Q+R    G TALM +A K        LL   GA     D +  N  +
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
Query: 177 HWAIYAKNH--VAIT-TLVSHTSSLEIPNAQGLTPFML 211
           H  + + +    AIT  L+ H + + +   +G TP +L
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 70  LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
           L  +PLH A + GH  +  +L++ G           T +H AA  GH  IV  L+  G +
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
           VN +D   MTAL W+       +   LLI +GA    Q K
Sbjct: 93  VNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADVHTQSK 131

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPL WA+  G +++V  L++ GADP ++  E  + +  A+  G+T IV  L+ + +++N+
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 133 QDRNGMTALMWS 144
            D NG T L+++
Sbjct: 98  YDWNGGTPLLYA 109

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 66  IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 125
           +G DL    L  A R G  D V +L+ +GAD    D  GST +H AA+ GH  +V  L+ 
Sbjct: 2   MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Query: 126 KGINVNLQDRNGMTAL 141
            G +VN QD+ G TA 
Sbjct: 61  AGADVNAQDKFGKTAF 76

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 26/196 (13%)
Query: 39  TLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
           T+LHW A N+  E          K  I+ GA V+A   D + TPL  A        V  L
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCD-ENTPLXLAVLARRRRLVAYL 185
Query: 91  IQHGADPTLMDSEGSTCIHQAA---QFGHTRIVAYLVAKGINVNLQ--DRNGMTALMWSA 145
            + GADPT+ +    + +HQAA    FG    V  L +  +  +++  DRNG TAL   A
Sbjct: 186 XKAGADPTIYNKSERSALHQAAANRDFGXX--VYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 146 YKV--FSLDPTRLLIT-------FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT- 195
           +      +   +LL+         GA+    +K  G  ALH+A    N   +  LV    
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 196 SSLEIPNAQGLTPFML 211
           S+ +  +  G TP  L
Sbjct: 304 SNKDKQDEDGKTPIXL 319

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 39  TLLHWAAINNR----IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 94
           + LH A I+      +E+++      A ++    +LQ TPLH A      +    L+  G
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 95  ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ------DRNGMTALMWSAYKV 148
            DP L D  G+T +H A + G    V  L       +L       + NG T L  ++   
Sbjct: 69  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
           + L    LL++ GA    Q+  +G  ALH A+  +N   ++ L+   + +     QG +P
Sbjct: 129 Y-LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Query: 209 FML--------LEENIGAPWLGKATVDKITELKDHYNTQ 239
           + L        +++ +G   L    +   +E ++ Y+T+
Sbjct: 188 YQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 69  DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 128
           +LQ TPLH A      +    L+  G DP L D  G+T +H A + G    V  L     
Sbjct: 40  NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 129 NVNLQ------DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 182
             +L       + NG T L  ++   + L    LL++ GA    Q+  +G  ALH A+  
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 183 KNHVAITTLVSHTSSLEIPNAQGLTPFML 211
           +N   ++ L+   + +     QG +P+ L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 39  TLLHWAAINNRIEIMKYFISQGA---IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA 95
           TLLH A+I   I  ++Y +  G+   + D  G     TPLH A   GHL  V LL+QH A
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW----TPLHEACNHGHLKVVELLLQHKA 67
Query: 96  DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
                  +  + +H AA+ GH  IV  L++ G + N
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           T LH A+ +G + SV  L+Q+G+DP + D  G T +H+A   GH ++V  L+     VN 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
                 + L   A K   +D  +LL+++GAS
Sbjct: 72  TGYQNDSPLH-DAAKNGHVDIVKLLLSYGAS 101

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 MTALMWSAYKVFSLDPTRLLITFGAS 163
            T L  +A    ++   + L+  GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 138 MTALMWSAYKVFSLDPTRLLITFGAS 163
            T L  +A    ++   + L+  GA+
Sbjct: 104 WTPLHCAA-SCNNVQVCKFLVESGAA 128

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A R G  D V +L+ +GAD    D +G T +H AA+ GH  IV  L+  G +VN QD+ G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 138 MTAL 141
            TA 
Sbjct: 69  KTAF 72

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 66  IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA 125
           +G DL    L  A R G  D V +L+ +GAD    D  GST +H AA+ GH  +V  L+ 
Sbjct: 20  MGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 126 KGINVNLQDRNGMTAL 141
            G +V  QD+ G TA 
Sbjct: 79  AGADVXAQDKFGKTAF 94

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 30  VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
           V+E D+E  T L+ A  NN IEI K  I +GA ++ +   +  +P  +A  QG  + +  
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGAQGRTEILAY 90
Query: 90  LIQHGADPTLMDSE--GSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTAL----- 141
           +++H A P L      G   +  AA+ GH   V  L+  G  +++ Q+  G TAL     
Sbjct: 91  MLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
           +    +++  D  +LL+  GA  +I+D   G  A+ +A
Sbjct: 150 LREGNQLYQ-DIVKLLMENGADQSIKDN-SGRTAMDYA 185

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 41/237 (17%)
Query: 9   NWYEFELTKVFV--GKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA---IV 63
           ++  +E+T++ +  G CV      N  D    T LH AA  NR+E+    +S GA   +V
Sbjct: 100 SYGHYEVTELLLKHGACV------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 64  DAIGG---DLQATP--------------LHWATRQGHLDSV----VLLIQHGADPTLMDS 102
           +  G    D+  TP              L  A R+  L  V     L I +   P   + 
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE- 212
Query: 103 EGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
              T +H A    H +   +   L+ KG NVN ++++ MT L  +A +  + D   +L  
Sbjct: 213 ---TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN-DVMEVLHK 268
Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI 216
            GA     D + G  ALH A  A +      L+S+ S   I + QG T   +  E +
Sbjct: 269 HGAKMNALDSL-GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 32  EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 83
           EP SE +  LH  A+  R       +  M   ++ GA V+ + GG   ATPL  AT    
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           L +   L+Q+GA+    DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 32  EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 83
           EP SE +  LH  A+  R       +  M   ++ GA V+ + GG   ATPL  AT    
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           L +   L+Q+GA+    DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 32  EPDSETVTLLHWAAINNR-------IEIMKYFISQGAIVDAI-GGDLQATPLHWATRQGH 83
           EP SE +  LH  A+  R       +  M   ++ GA V+ + GG   ATPL  AT    
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           L +   L+Q+GA+    DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 68  GDLQATPLHWATRQGHLDSVVLLIQHGADPTL----MDSE---GSTCIHQAAQFGHTRIV 120
           G +  T LH A    +L++ ++L++  A P L    M SE   G T +H A    +  +V
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 121 AYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
             L+A+G +V+ +                G   L ++A  V S +  RLLI  GA    Q
Sbjct: 92  RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADIRAQ 150
Query: 168 DKIHGNVALHWAIYAKNHVAITTLVS---------HTSSLE-IPNAQGLTPFML--LEEN 215
           D + GN  LH  I   N      + +         H  SLE +PN QGLTPF L  +E N
Sbjct: 151 DSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Query: 216 I 216
           I
Sbjct: 210 I 210

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 18/220 (8%)
Query: 21  GKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
           G  ++ G+D+   +  T             +++   ++QGA ++A       T LH A R
Sbjct: 13  GGGLDTGEDIENNEDSTA------------QVISDLLAQGAELNATMDKTGETSLHLAAR 60
Query: 81  QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMT 139
               D+   L+  GAD    D+ G T +H A       +   L+  +  N+N +  +G T
Sbjct: 61  FARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTT 120
Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            L+ +A           LIT  A     D   G  ALHWA    N  A+  L+ H ++ +
Sbjct: 121 PLILAARLAIE-GMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 200 IPNAQGLTPFMLLEENIGAPWLGKATVDKIT--ELKDHYN 237
             + +  TP  L     G+    KA +D     E+ DH +
Sbjct: 179 AQDDKDETPLFLAARE-GSYEASKALLDNFANREITDHMD 217

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
           +H A R G LD++  L+++ AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
             A++  A +   LD  + L+   A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  F-AVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  F-AVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 77  WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
           WA + G LD V   +  G D       G   +H AA  G   I+ +L+ KG ++N  D++
Sbjct: 13  WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
            +T L+ + Y+   +   +LL++ GA  T++
Sbjct: 73  HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 102

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 77  WATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
           WA + G LD V   +  G D       G   +H AA  G   I+ +L+ KG ++N  D++
Sbjct: 8   WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
            +T L+ + Y+   +   +LL++ GA  T++
Sbjct: 68  HITPLLSAVYE-GHVSCVKLLLSKGADKTVK 97

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%)
Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
           D+   + + +T LH A      E ++  + +GA +DA+      +PL  A     L  V 
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
           LL+QHGA+       GS+ +H A+  G   +V  LV  G + +L++ +  T LM +  +
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  -NAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVNLQ 133
           +H A R G LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 134 DRNGMTA 140
           +  G TA
Sbjct: 134 NHKGDTA 140

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 78  ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG 137
           A  +G L+ +  L+Q+  +    +  G T + Q  + G+  I   L+ +G N +L+DR G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
             A++  A +   LD  + L+ F A   I+D   GN+ LH A    +   +  LV HT+S
Sbjct: 71  F-AVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTAS 128

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVA-KGINVN 131
           T L  A   G +D V  L+   AD  + D +GST +  A + GH  I   L+A    +++
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS 244
Query: 132 LQDRNGMTALM 142
           L DR+G TALM
Sbjct: 245 LTDRDGSTALM 255

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVN 131
            PLH A ++G+L  +   + +      +D  GST ++ A   GH  IV  L  +  I +N
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 182
            Q++ G TAL  +A+K ++ D  +LL+  GA T +++ I   +A   A  A
Sbjct: 135 QQNKLGDTALHAAAWKGYA-DIVQLLLAKGARTDLRN-IEKKLAFDXATNA 183

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 35/124 (28%)
Query: 41  LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------- 84
           +H AAI+     ++  ISQG  V+ I  D   +PLH A   GHL                
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 85  -----------------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
                            D V LL+QHGA     +S+ ++ IH+AA+ GH   V  L+A G
Sbjct: 66  TADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 128 INVN 131
            N++
Sbjct: 125 GNID 128

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 35/124 (28%)
Query: 41  LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL---------------- 84
           +H AAI+     ++  ISQG  V+ I  D   +PLH A   GHL                
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 85  -----------------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
                            D V LL+QHGA     +S+ ++ IH+AA+ GH   V  L+A G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYG 180
Query: 128 INVN 131
            N++
Sbjct: 181 GNID 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	584
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-75
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-43
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-43
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-50
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-50
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-50
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-45
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-46
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-36
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-46
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-39
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-46
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-42
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-46
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-45
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-41
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-44
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-44
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-31
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-44
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-41
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-44
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-44
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-41
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-44
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-39
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-44
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-43
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-43
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-42
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-42
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-40
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-41
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-29
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-41
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-38
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-41
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-41
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-30
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-40
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-31
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-33
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-39
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-37
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-39
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-37
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-06
2rfa_A	232	Transient receptor potential cation channel subfa	4e-39
2rfa_A	232	Transient receptor potential cation channel subfa	2e-37
2rfa_A	232	Transient receptor potential cation channel subfa	1e-30
2rfa_A	232	Transient receptor potential cation channel subfa	7e-25
2rfa_A	232	Transient receptor potential cation channel subfa	8e-15
2rfa_A	232	Transient receptor potential cation channel subfa	8e-13
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-38
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-38
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-36
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-37
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-36
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-36
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-32
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-35
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-34
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-33
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
2pnn_A	273	Transient receptor potential cation channel subfa	3e-31
2pnn_A	273	Transient receptor potential cation channel subfa	7e-31
2pnn_A	273	Transient receptor potential cation channel subfa	3e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-30
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-26
2etb_A	256	Transient receptor potential cation channel subfam	2e-30
2etb_A	256	Transient receptor potential cation channel subfam	7e-28
2etb_A	256	Transient receptor potential cation channel subfam	9e-22
2etb_A	256	Transient receptor potential cation channel subfam	7e-12
2etb_A	256	Transient receptor potential cation channel subfam	4e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-04

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  238 bits (611), Expect = 2e-75
 Identities = 110/189 (58%), Positives = 144/189 (76%), Gaps = 2/189 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VEAG DV +PD E VTLLHWAAINNRI+++KY+IS+GAIVD +GGDL +TPLHWATRQGH
Sbjct: 29  VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L  VV L+++GADP+L+D EG +CIH AAQFGHT IVAYL+AKG +V++ D+NGMT LMW
Sbjct: 89  LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
           +AY+  S+DPTRLL+TF  S  + DK H N ALHWA+    +  +   L+   ++++  N
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVDAQN 207

Query: 203 AQGLTPFML 211
            +G +   L
Sbjct: 208 IKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (392), Expect = 1e-43
 Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 6/182 (3%)

Query: 30  VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
           +   D  +   +  A      E  +  +  G  V     +   T LHWA     +D V  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKY 60

Query: 90  LIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
            I  GA    +  +  ST +H A + GH  +V  L+  G + +L D  G + +  +A   
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF- 119

Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP-NAQGL 206
                   LI  G    + D+ +G   L WA Y  + V  T  L++   S+ +       
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178

Query: 207 TP 208
           T 
Sbjct: 179 TA 180

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (392), Expect = 2e-43
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 24  VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           +  G  V++   +   T LHWA     + ++   +  GA    I G+   + +H A + G
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQFG 120

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR-IVAYLVAKGINVNLQDR-NGMTA 140
           H   V  LI  G D  +MD  G T +  AA   H+      L+   ++VNL D+ +  TA
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180

Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
           L W+     +     LL+  GA+   Q+   G  AL  A   + +V +   L   
Sbjct: 181 LHWAVLAG-NTTVISLLLEAGANVDAQNI-KGESALDLAKQ-RKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  135 bits (343), Expect = 1e-36
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++ G D +  D E  + +H AA      I+ Y I++G  VD +  +   TPL WA  + H
Sbjct: 96  MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM-TPLMWAAYRTH 154

Query: 84  LDSVV-LLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
                 LL+       L D    +T +H A   G+T +++ L+  G NV+ Q+  G +AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 142 MWSAYKVFSLDPTRLLITFGA 162
             +  +  ++     L     
Sbjct: 215 DLAKQRK-NVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (327), Expect = 2e-34
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
             +  AT+ G  +    L++ G D    D E  T +H AA      +V Y ++KG  V+ 
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 133 QDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 190
              +   T L W+  +   L     L+ +GA  ++ D   G   +H A     H +I   
Sbjct: 71  LGGDLNSTPLHWATRQG-HLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQ-FGHTSIVAY 127

Query: 191 LVSHTSSLEIPNAQGLTPFML 211
           L++    +++ +  G+TP M 
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  117 bits (296), Expect = 3e-30
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAIN-NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           +  GQDV+  D   +T L WAA   + ++  +  ++    V+      + T LHWA   G
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
           +   + LL++ GA+    + +G + +  A Q  +  ++ +L        
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 96.7 bits (242), Expect = 7e-23
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
           +D   +  I +A Q+G       LV  G +V   D+  +T L W+A     +D  +  I+
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYIS 63

Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
            GA          +  LHWA   + H+++   L+ + +   + + +G +   L
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
           ++   D      ++ +       +  R L+  G      DK      LHWA    N + +
Sbjct: 1   HMTHIDDYSTWDIVKATQY-GIYERCRELVEAGYDVRQPDK-ENVTLLHWAAI-NNRIDL 57

Query: 189 T-TLVSH 194
               +S 
Sbjct: 58  VKYYISK 64

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 4e-06
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 65
           +EAG +V+  + +  + L  A     + ++ +          
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  178 bits (455), Expect = 2e-50
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G          +T LH A+    + I+K  + +GA  +     ++ TPLH A R GH + 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEV 62

Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
              L+Q+ A       +  T +H AA+ GHT +V  L+    N NL    G T L  +A 
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 147 KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQG 205
           +   ++    L+   AS     K  G   LH A      V +   L+   +        G
Sbjct: 123 EG-HVETVLALLEKEASQACMTK-KGFTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNG 179

Query: 206 LTPFML 211
           LTP  +
Sbjct: 180 LTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  178 bits (455), Expect = 2e-50
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 5/189 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++ G   N  + +  T LH AA     E+ KY +   A V+A   D Q TPLH A R GH
Sbjct: 34  LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGH 92

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            + V LL+++ A+P L  + G T +H AA+ GH   V  L+ K  +     + G T L  
Sbjct: 93  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 202
           +A     +    LL+   A      K +G   LH A++  N++ I   L+    S   P 
Sbjct: 153 AAKY-GKVRVAELLLERDAHPNAAGK-NGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSPA 209

Query: 203 AQGLTPFML 211
             G TP  +
Sbjct: 210 WNGYTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  174 bits (444), Expect = 7e-49
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E   + N   +   T LH AA    +E +   + + A    +      TPLH A + G 
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGK 158

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           +    LL++  A P      G T +H A    +  IV  L+ +G + +    NG T L  
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
           +A +   ++  R L+ +G S   +    G   LH A   + H  +   L+S  ++  + N
Sbjct: 219 AAKQN-QVEVARSLLQYGGSANAESV-QGVTPLHLAAQ-EGHAEMVALLLSKQANGNLGN 275

Query: 203 AQGLTPFML 211
             GLTP  L
Sbjct: 276 KSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  173 bits (442), Expect = 1e-48
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E     N      +T LH A  +N ++I+K  + +G    +   +   TPLH A +Q  
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQ 224

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           ++    L+Q+G        +G T +H AAQ GH  +VA L++K  N NL +++G+T L  
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
            A +   +    +LI  G       +  G   LH A +   ++ +   L+ H + +    
Sbjct: 285 VAQEG-HVPVADVLIKHGVMVDATTR-MGYTPLHVASH-YGNIKLVKFLLQHQADVNAKT 341

Query: 203 AQGLTPFML 211
             G +P   
Sbjct: 342 KLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  172 bits (439), Expect = 5e-48
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G   + P     T LH AA  N++E+ +  +  G   +A       TPLH A ++GH
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGH 257

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            + V LL+   A+  L +  G T +H  AQ GH  +   L+  G+ V+   R G T L  
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
           +++   ++   + L+   A    + K  G   LH A   + H  I   L+ + +S    +
Sbjct: 318 ASHY-GNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQ-QGHTDIVTLLLKNGASPNEVS 374

Query: 203 AQGLTPFML 211
           + G TP  +
Sbjct: 375 SDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (391), Expect = 2e-41
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +    + N  +   +T LH  A    + +    I  G +VDA       TPLH A+  G+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGN 323

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           +  V  L+QH AD       G + +HQAAQ GHT IV  L+  G + N    +G T L  
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

Query: 144 SAYKVFSLDPTRLLITF---GASTTIQDKIHGNVALH 177
           +      +  T +L       +   + DK H      
Sbjct: 384 AKRL-GYISVTDVLKVVTDETSFVLVSDK-HRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (359), Expect = 5e-37
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 58  SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT 117
           S G      G     TPLH A+  GHL  V  L+Q GA P + + +  T +H AA+ GHT
Sbjct: 2   SPGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 118 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
            +  YL+     VN + ++  T L  +A      +  +LL+   A+  +     G+  LH
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATT-AGHTPLH 118

Query: 178 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
            A   + HV     L+   +S      +G TP  +
Sbjct: 119 IAAR-EGHVETVLALLEKEASQACMTKKGFTPLHV 152

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.4 bits (132), Expect = 5e-08
 Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 13/77 (16%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKY---FISQGAIVDAIGGDLQATPLHWATR 80
           ++ G   NE  S+  T L  A     I +         + + V                R
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH----------R 413

Query: 81  QGHLDSVVLLIQHGADP 97
               ++V  ++    D 
Sbjct: 414 MSFPETVDEILDVSEDE 430

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  171 bits (436), Expect = 9e-50
 Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 6/182 (3%)

Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
           +         + LH AA    ++I    +  GA +D    D + TPL  A    HL++V 
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVK 61

Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYK 147
            LI+ GA     D+EGSTC+H AA+ GH  +V YL++ G ++VN QD  G T ++W+   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 148 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 206
              +D  +LL++ G+   I+D    N+ LHWA +    V I   L++    L   N  G 
Sbjct: 122 K-HVDLVKLLLSKGSDINIRDN-EENICLHWAAF-SGCVDIAEILLAAKCDLHAVNIHGD 178

Query: 207 TP 208
           +P
Sbjct: 179 SP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  161 bits (411), Expect = 3e-46
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           V+AG +++    +  T L  AA NN +E +KY I  GA+VD    +   T LH A ++GH
Sbjct: 31  VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGH 89

Query: 84  LDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
            + V  L+ +G  D    D  G T +  A ++ H  +V  L++KG ++N++D      L 
Sbjct: 90  YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIP 201
           W+A+    +D   +L+         +  HG+  LH A   +N        +S  S + + 
Sbjct: 150 WAAFS-GCVDIAEILLAAKCDLHAVNI-HGDSPLHIAAR-ENRYDCVVLFLSRDSDVTLK 206

Query: 202 NAQGLTPFML 211
           N +G TP   
Sbjct: 207 NKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  159 bits (406), Expect = 1e-45
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 82
           ++AG  V+  D+E  T LH AA     E+++Y +S G + V+        TP+ WAT   
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWATEYK 122

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
           H+D V LL+  G+D  + D+E + C+H AA  G   I   L+A   +++  + +G + L 
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
            +A +    D   L ++  +  T+++K  G   L  A    + V     +   
Sbjct: 183 IAARE-NRYDCVVLFLSRDSDVTLKNK-EGETPLQCASL-NSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  123 bits (311), Expect = 3e-32
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           +PLH A   GH+D   +L+Q GA+      +  T + +AA+  H   V YL+  G  V+ 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-T 190
           +D  G T L  +A K    +  + L++ G      QD   G   + WA     HV +   
Sbjct: 73  KDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATE-YKHVDLVKL 129

Query: 191 LVSHTSSLEIPNAQGLTPFML 211
           L+S  S + I + +       
Sbjct: 130 LLSKGSDINIRDNEENICLHW 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (292), Expect = 1e-29
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G D+N  D+E    LHWAA +  ++I +  ++    + A+      +PLH A R+  
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENR 189

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
            D VVL +   +D TL + EG T +  A+          +     +
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.0 bits (209), Expect = 1e-18
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
                + +H AA+ GH  I   LV  G N++    +  T LM +A     L+  + LI  
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKA 66

Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 211
           GA    +D   G+  LH A   K H  +   L+S+    +   +  G TP + 
Sbjct: 67  GALVDPKDA-EGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.8 bits (141), Expect = 1e-09
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 128 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 187
           +N  ++ +N  + L  +A     +D   +L+  GA+     +      L  A    NH+ 
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAG-HVDICHMLVQAGANIDTCSE-DQRTPLMEAAE-NNHLE 58

Query: 188 IT-TLVSHTSSLEIPNAQGLTPFML 211
               L+   + ++  +A+G T   L
Sbjct: 59  AVKYLIKAGALVDPKDAEGSTCLHL 83

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  159 bits (405), Expect = 3e-46
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
             +H  A    ++ +K  + +G  +     +   TPL WA+  G +++V  L++ GADP 
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
           ++  E  + +  A+  G+T IV  L+ + +++N+ D NG T L+++      +     L+
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALL 122

Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
             GA  T +    G   +  A+    +  +   + +H   L   N     P
Sbjct: 123 ARGADLTTEAD-SGYTPMDLAVA-LGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  145 bits (369), Expect = 4e-41
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 24  VEAGQD-VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           +  G + VN+PD    T L WA+    IE +++ +  GA    +  + + + L  A+  G
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGG 80

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
           + D V LL++   D  + D  G T +  A +  H + V  L+A+G ++  +  +G T + 
Sbjct: 81  YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDK 169
            +          +++          + 
Sbjct: 141 LAVALG-YRKVQQVIENHILKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (335), Expect = 2e-36
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G D +    E  + L  A+     +I+   + +   ++    +   TPL +A R  H
Sbjct: 56  LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNH 114

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           +  V  L+  GAD T     G T +  A   G+ ++   +    + +   +     
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.0 bits (209), Expect = 4e-19
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
            S  IHQ A  G    +   + KG N VN  D  G T L+W++     ++  R L+ +GA
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-EIETVRFLLEWGA 60

Query: 163 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
              I  K     AL  A     +  I   L+     + I +  G TP
Sbjct: 61  DPHILAK-ERESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTP 105

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  163 bits (414), Expect = 3e-46
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 13/184 (7%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
            LL  A  N  +++++  +  GA V+    +   TPLH A +    D V LL++HGADP 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
           L    G+T    AA  G  +++   ++KG +VN  D  G TA M +A     +   + L 
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLY 125

Query: 159 TFGASTTIQDK---------IHGNVALHWAIYAKNHVAIT-TLVSHT-SSLEIPNAQGLT 207
             GA+  ++ K           G  AL  A   K HV +   L+    + +   +  G  
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 208 PFML 211
             + 
Sbjct: 185 ALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  151 bits (385), Expect = 4e-42
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 19/204 (9%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G D         T    AAI   ++++K F+S+GA V+        T    A   G 
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGK 117

Query: 84  LDSVVLLIQHGAD----------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNL 132
           + ++  L + GA+             +   G+T +  AA+ GH  ++  L+ + G +VN 
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177

Query: 133 QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
            D  G  AL+ +            T LL+  GA   ++ +  G   L  A+  K H+ + 
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVE-KKHLGLV 235

Query: 190 -TLVSHT-SSLEIPNAQGLTPFML 211
             L+      +   ++ G T  +L
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  144 bits (365), Expect = 3e-39
 Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---------TP 74
           +  G DVNE D    T    AA+  +++ +K+   +GA V+      +          T 
Sbjct: 92  LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151

Query: 75  LHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTR----IVAYLVAKGIN 129
           L  A  +GH++ + +L+   GAD    D+ G   +  A           I   L+  G +
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVAI 188
           VN++   G T L+ +  K   L   + L+          D   G  AL  A+       I
Sbjct: 212 VNVRGERGKTPLILAVEK-KHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVE-LKLKKI 268

Query: 189 T-TLVSH 194
              L   
Sbjct: 269 AELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  128 bits (325), Expect = 1e-33
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 8/150 (5%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLD 85
            +D         T L  AA    +E++K  + + GA V+A     +   L  A       
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDS 196

Query: 86  S----VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTA 140
                  LL+ HGAD  +    G T +  A +  H  +V  L+ +  I +N  D +G TA
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
           L+ +           LL   GAST   D +
Sbjct: 257 LLLAVEL-KLKKIAELLCKRGASTDCGDLV 285

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  113 bits (285), Expect = 3e-28
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 25  EAGQDVNEPDSETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATR 80
           E G DVN  D+     L  A +++       I    +  GA V+  G   + TPL  A  
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVE 228

Query: 81  QGHLDSV-VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
           + HL  V  LL Q   +    DS+G T +  A +    +I   L  +G + +  D
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 90.2 bits (225), Expect = 3e-20
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLIT 159
             E +  + +A Q     +V  L+  G NVN Q+   G T L  +       D   LL+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLR 60

Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
            GA   ++ K +G      A      V +    +S  + +   +  G T FM 
Sbjct: 61  HGADPVLRKK-NGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTAFME 111

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  163 bits (414), Expect = 4e-46
 Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 9/185 (4%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
           + +D  + D    +  ++A  +N + ++   ++ GA+ + +  +    PLH A       
Sbjct: 20  SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE---FPLHQAATLEDTK 76

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG-MTALMWS 144
            V +L+  G D +  D +G+T ++ A   G+ + V   V K   +    + G  T+   +
Sbjct: 77  IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136

Query: 145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNA 203
                 +      ++   S    D       +H  I    HV +   L+ + +S    N+
Sbjct: 137 VMLN-DVSIVSYFLSEIPS--TFDLAILLSCIHITIK-NGHVDMMILLLDYMTSTNTNNS 192

Query: 204 QGLTP 208
               P
Sbjct: 193 LLFIP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  153 bits (388), Expect = 2e-42
 Identities = 22/187 (11%), Positives = 60/187 (32%), Gaps = 13/187 (6%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           + +G D ++ D +  T L++A  +  ++ +K F+ +   +   G     T  + A     
Sbjct: 82  LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-ALM 142
           +  V   +          +   +CIH   + GH  ++  L+    + N  +       + 
Sbjct: 142 VSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIK 200

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIP 201
            +      ++  + L  +  +           A    +   +   I   ++      +  
Sbjct: 201 LAIDN-KDIEMLQALFKYDIN--------IYSANLENVL-LDDAEIAKMIIEKHVEYKSD 250

Query: 202 NAQGLTP 208
           +      
Sbjct: 251 SYTKDLD 257

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  111 bits (280), Expect = 2e-27
 Identities = 8/113 (7%), Positives = 30/113 (26%), Gaps = 7/113 (6%)

Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
                 +  ++ +H    N  +++M   +      +     L    +  A     ++ + 
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
            L ++  +         +   +        I   ++ K +            +
Sbjct: 213 ALFKYDINI-------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 94.5 bits (236), Expect = 9e-22
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 10/141 (7%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
                 T       +   +    D    D  G +  + A    + R+V  L+  G   NL
Sbjct: 3   DLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 191
            +      L  +A         ++L+  G   +  D   GN AL++A+    ++      
Sbjct: 60  LE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQFDD-KGNTALYYAVD-SGNMQTVKLF 114

Query: 192 VSHTSSLEIPNAQGL-TPFML 211
           V     L      G  T F  
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 10/114 (8%)

Query: 24  VEAGQDVNEPDSETVT-LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           ++     N  +S      +  A  N  IE+++        +         +         
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLD 232

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
             +   ++I+   +           I +  +     I      + + VN   +N
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI-ISKNKELRLMYVNCVKKN 285

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  157 bits (399), Expect = 2e-45
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
             +H  A    +  +   I Q  +++    +   TPL WA   G +  V  L+Q+GADP 
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
           L+     + +  A   G+T IV  L+  G++VN  D NG T L+++ +    +   ++L+
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLL 122

Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
             GA  TI+    G  ++  A+    + ++   + SH
Sbjct: 123 ESGADPTIETD-SGYNSMDLAVA-LGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  146 bits (372), Expect = 1e-41
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 2/146 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E    +N  D E  T L WAA + +I ++++ +  GA    +G   + + L  A  +G+
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGY 81

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            D V +L+  G D    D  G T +  A    H + V  L+  G +  ++  +G  ++  
Sbjct: 82  TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDK 169
           +          +++ +         K
Sbjct: 142 AVALG-YRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
            S  +HQ A  G    +A  + +   +N  D  G T LMW+A     +     L+  GA 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGAD 61

Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
             +  K     AL  A   K +  I   L+     +   +  G TP + 
Sbjct: 62  PQLLGK-GRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
               ++   A +   +      I         D+  G   L WA      +A+   L+ +
Sbjct: 2   ANSLSVHQLAAQ-GEMLYLATRIEQENVINHTDE-EGFTPLMWAAA-HGQIAVVEFLLQN 58

Query: 195 TSSLEIPNAQGLTPFML 211
            +  ++      +   L
Sbjct: 59  GADPQLLGKGRESALSL 75

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  159 bits (404), Expect = 1e-44
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G  VN   ++ V+ LH A +   +  +K  +  GA V+ +  D   TPL  A   G 
Sbjct: 79  ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGS 137

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            D V LL+QHGA     +S+ ++ IH+AA+ GH   V  L+A G N++ +  +  T L  
Sbjct: 138 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
           +          + L+  GA   +      +  LH  +       +   L+   +  +  N
Sbjct: 197 ACENQ-QRACVKKLLESGAD--VNQGKGQDSPLHAVVR-TASEELACLLMDFGADTQAKN 252

Query: 203 AQGLTPFML 211
           A+G  P  L
Sbjct: 253 AEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  157 bits (400), Expect = 4e-44
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++ G  VN   ++  T L  A ++   + +   +  GA V        A+P+H A R+GH
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGH 169

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           ++ V  LI +G +     S   T ++ A +      V  L+  G +VN Q +   + L  
Sbjct: 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
                 S +   LL+ FGA T  ++   G   +      ++ +A   L   
Sbjct: 229 VVRTA-SEELACLLMDFGADTQAKNA-EGKRPVELVPP-ESPLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  147 bits (374), Expect = 2e-40
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 8/189 (4%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           V  G  +   D +   +        R       +S   + DA+      +P+H A   GH
Sbjct: 15  VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD---WSPMHEAAIHGH 71

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
             S+  LI  G    ++ ++  + +H+A   GH   V  L+  G  VN    +  T L  
Sbjct: 72  QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
           +     S D   LL+  GAS  +Q +      +H A   + HV    +L+++  +++   
Sbjct: 132 ACVSG-SWDCVNLLLQHGAS--VQPESDLASPIHEAAR-RGHVECVNSLIAYGGNIDHKI 187

Query: 203 AQGLTPFML 211
           +   TP  L
Sbjct: 188 SHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  121 bits (305), Expect = 6e-31
 Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 16/173 (9%)

Query: 44  AAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQGHLDSVVLLIQHGADPTL 99
            + ++        + +G+ + ++ G       + P       G       L+ +      
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56

Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
           +     + +H+AA  GH   +  L+++G  VN+   + ++ L  +      L   ++L+ 
Sbjct: 57  VS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLK 113

Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
            GA          +  L  A            L+ H +S++  +    +P   
Sbjct: 114 HGAQVNGVTA-DWHTPLFNACV-SGSWDCVNLLLQHGASVQPES-DLASPIHE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  115 bits (290), Expect = 7e-29
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G +++   S   T L+ A  N +   +K  +  GA V+   G  Q +PLH   R   
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTAS 234

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
            +   LL+  GAD    ++EG   +             +L  +G ++ 
Sbjct: 235 EELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  157 bits (400), Expect = 1e-44
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 10/204 (4%)

Query: 14  ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
                 V    + G++++  ++   T LH A I     +++  ++ GA   A+    Q T
Sbjct: 23  PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-T 81

Query: 74  PLHWATRQGHLDSVVLLIQHGADPTL----MDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
             H A        +  L+   A  TL     + +G T +H A        V  L+ +G +
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

Query: 130 VNLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
           ++  D   G + L+ +     SL   +LL+  GA+   Q    G+ ALH A   +  + +
Sbjct: 142 IDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSSALHSASG-RGLLPL 198

Query: 189 T-TLVSHTSSLEIPNAQGLTPFML 211
             TLV   +   + N    TP M+
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  151 bits (383), Expect = 3e-42
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI----VDAIGGDLQATPLHWAT 79
           V AG      D    T  H A  +     ++  +   A     ++A   D   T LH A 
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAV 124

Query: 80  RQGHLDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 138
                ++V LL++ GAD   +D + G + +  A +     +V  L+  G NVN Q  +G 
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184

Query: 139 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
           +AL  ++ +   L   R L+  GA +++++  H +  L  A   +  + I     + 
Sbjct: 185 SALHSASGR-GLLPLVRTLVRSGADSSLKNC-HNDTPLMVARS-RRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  149 bits (379), Expect = 1e-41
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 12/188 (6%)

Query: 30  VNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDAIGGDLQATPLHWATRQGHLD 85
               D +  T LH A +   +  +   ++     G  +D      Q TPLH A       
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPS 60

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG----INVNLQDRNGMTAL 141
            V LL+  GA P  +D  G T  H A +      +  L+       +++  ++ +G+TAL
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEI 200
             +       +  +LL+  GA     D   G   L  A+   N +++   L+ H +++  
Sbjct: 121 HVAVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVE-NNSLSMVQLLLQHGANVNA 178

Query: 201 PNAQGLTP 208
               G + 
Sbjct: 179 QMYSGSSA 186

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  144 bits (366), Expect = 8e-40
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 14  ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
              +  +        D+   + + +T LH A      E ++  + +GA +DA+      +
Sbjct: 93  TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS 152

Query: 74  PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
           PL  A     L  V LL+QHGA+       GS+ +H A+  G   +V  LV  G + +L+
Sbjct: 153 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212

Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
           + +  T LM +  +   +D  R   T  AS
Sbjct: 213 NCHNDTPLMVARSR-RVIDILRGKATRPAS 241

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  156 bits (396), Expect = 3e-44
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 6/173 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 82
           +EA  D N  D+   T LH A   +   + +  I   A  +DA   D   TPL  A R  
Sbjct: 45  LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 103

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
               +  LI   AD   +D  G + +H AA   +      L+  G N ++Q+    T L 
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
            +A +  S +  ++L+   A+  I D     +    A   + H  I   L  +
Sbjct: 164 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  145 bits (369), Expect = 2e-40
 Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 11/201 (5%)

Query: 14  ELTKVFVGKCVEAGQDV-NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA 72
            +   F+      G  + N+ D    T LH AA  +R +  K  +   A  +      + 
Sbjct: 5   AVISDFI----YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR- 59

Query: 73  TPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
           TPLH A          +LI++ A D      +G+T +  AA+     ++  L+    +VN
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 190
             D  G +AL W+A    ++D   +L+  GA+  +Q+       L  A   +        
Sbjct: 120 AVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNN-REETPLFLAAR-EGSYETAKV 176

Query: 191 LVSHTSSLEIPNAQGLTPFML 211
           L+ H ++ +I +     P  +
Sbjct: 177 LLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (336), Expect = 8e-36
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 5/166 (3%)

Query: 48  NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC 107
           +   ++  FI QGA +         T LH A R    D+   L++  AD  + D+ G T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 108 IHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 166
           +H A       +   L+     +++ +  +G T L+ +A           LI   A    
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNA 120

Query: 167 QDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
            D   G  ALHWA    N+V     L+ + ++ ++ N +  TP  L
Sbjct: 121 VDD-LGKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  112 bits (283), Expect = 1e-28
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           + +  DVN  D    + LHWAA  N ++     +  GA  D      + TPL  A R+G 
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 170

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
            ++  +L+ H A+  + D         A +  H  IV  L    +  +
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  154 bits (392), Expect = 5e-44
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 10/178 (5%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
            +    V+E D+E  T L+ A  NN IEI K  I +GA ++        +P  +A  QG 
Sbjct: 26  QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGAQGR 84

Query: 84  LDSVVLLIQHGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVNLQDRNGMTAL 141
            + +  +++H   D    +  G   +  AA+ GH   V  L+  G  +++ Q+  G TAL
Sbjct: 85  TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144

Query: 142 MWSAYKVFS----LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
           + +           D  +LL+  GA  +I+D   G  A+ +A   K +  I+  L  +
Sbjct: 145 IEAVGLREGNQLYQDIVKLLMENGADQSIKDN-SGRTAMDYANQ-KGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  147 bits (375), Expect = 1e-41
 Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 10/180 (5%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
            LL  A   +  ++ +        VD +  +   TPL+ A     ++    LI  GAD  
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLL 157
           L +S   +    A   G T I+AY++     ++N  +R G  AL+ +A K   +D  +LL
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLL 125

Query: 158 ITFG-ASTTIQDKIHGNVALHWAIYA----KNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
           +  G      Q+   G  AL  A+      + +  I   L+ + +   I +  G T    
Sbjct: 126 LEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 83.3 bits (207), Expect = 1e-18
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
             E    +  A Q    ++   L      V+  D  G T L  + +    ++  + LI  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDR 61

Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFML 211
           GA   +Q+    +    +A   +    I   ++ H T  L   N  G    + 
Sbjct: 62  GADINLQNS-ISDSPYLYAGA-QGRTEILAYMLKHATPDLNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-T 190
           ++       L  +  +  +     +L          D   GN  L+ A++  N + I   
Sbjct: 1   MKTYEVGALLEAANQRD-TKKVKEILQDTTYQVDEVDT-EGNTPLNIAVH-NNDIEIAKA 57

Query: 191 LVSHTSSLEIPNAQGLTPFML 211
           L+   + + + N+   +P++ 
Sbjct: 58  LIDRGADINLQNSISDSPYLY 78

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  155 bits (393), Expect = 9e-44
 Identities = 49/216 (22%), Positives = 75/216 (34%), Gaps = 19/216 (8%)

Query: 33  PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 92
           P+      L      N  +     I+ G  V      L    L  ++ +G  D V  +I 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 93  HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 152
              DP+L + EG T +H A   GHT IV +LV  G+NVN  D +G T L  +A    ++ 
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQ 117

Query: 153 PTRLLITFGASTTIQDK--IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPF 209
             + L+  GA+        +         +  + +   +  L      + I N   +   
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEME-EGYTQCSQFLYGVQEKMGIMNKGVIYA- 175

Query: 210 MLLEENIGAPWLGKATVDKITELKDHYNTQQNIIHR 245
                      L         EL         IIHR
Sbjct: 176 -----------LWDYEPQNDDELPMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  142 bits (361), Expect = 4e-39
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +    D + P+ E +T LH A      EI+K+ +  G  V+A   D   TPLH A    +
Sbjct: 57  IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNN 115

Query: 84  LDSVVLLIQHGADP---TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
           +     L++ GA     T  D + +    +  + G+T+   +L      + + ++  + A
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYA 175

Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN-VALHWA 179
           L     +    +   L +  G   TI  +   + +   WA
Sbjct: 176 LWDYEPQ----NDDELPMKEGDCMTIIHREDEDEIEWWWA 211

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  106 bits (266), Expect = 4e-26
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG--GDLQATPLHWATRQ 81
           V+ G +VN  DS+  T LH AA  N +++ K+ +  GA V A+       A        +
Sbjct: 90  VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

Query: 82  GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           G+      L        +M+      +          +        + +  ++       
Sbjct: 150 GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL-PMKEGDCMTIIHREDEDEIEW 208

Query: 142 MWSA 145
            W+ 
Sbjct: 209 WWAR 212

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  155 bits (395), Expect = 9e-44
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQG 82
           +EA  D N  D+   T LH A   +   + +  I   A  +DA   D   TPL  A R  
Sbjct: 77  LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLA 135

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
               +  LI   AD   +D  G + +H AA   +      L+  G N ++Q+    T L 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
            +A +  S +  ++L+   A+  I D     +    A   + H  I   L   
Sbjct: 196 LAARE-GSYETAKVLLDHFANRDITDH-MDRLPRDIAQE-RMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  152 bits (387), Expect = 1e-42
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 29  DVNEPDSETVTLLHWAAIN-------------NRIEIMKYFISQGAIVDAIGGDLQATPL 75
           DVN    +  T L  A+ +             +   ++  FI QGA +         T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 76  HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQD 134
           H A R    D+   L++  AD  + D+ G T +H A       +   L+     +++ + 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 135 RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS 193
            +G T L+ +A           LI   A     D   G  ALHWA    N+V     L+ 
Sbjct: 122 HDGTTPLILAARL-AVEGMLEDLINSHADVNAVDD-LGKSALHWAAA-VNNVDAAVVLLK 178

Query: 194 HTSSLEIPNAQGLTPFML 211
           + ++ ++ N +  TP  L
Sbjct: 179 NGANKDMQNNREETPLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  136 bits (345), Expect = 9e-37
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
             D++    +  T L  AA      +++  I+  A V+A+    + + LHWA    ++D+
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDA 172

Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
            V+L+++GA+  + ++   T +  AA+ G       L+    N ++ D         +  
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232

Query: 147 KVFSLDPTRLLITFGA 162
           +    D  RLL     
Sbjct: 233 R-MHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  113 bits (285), Expect = 2e-28
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           + +  DVN  D    + LHWAA  N ++     +  GA  D      + TPL  A R+G 
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGS 202

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
            ++  +L+ H A+  + D         A +  H  IV  L  +  + +
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.6 bits (130), Expect = 4e-08
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 128 INVNLQDRNGMTALMWSAYKVF------------SLDPTRLLITFGASTTIQDKIHGNVA 175
           ++VN++  +G T LM ++                +       I  GAS   Q    G  A
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 176 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
           LH A    +       L+  ++   I +  G TP   
Sbjct: 61  LHLAAR-YSRSDAAKRLLEASADANIQDNMGRTPLHA 96

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  155 bits (393), Expect = 1e-43
 Identities = 53/197 (26%), Positives = 74/197 (37%), Gaps = 12/197 (6%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
              +N  ++   T LH A I N+ EI +  +  G   +        TPLH A  QG L S
Sbjct: 35  LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLAS 93

Query: 87  VVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMT 139
           V +L Q    P L       +  G TC+H A+  G+  IV  LV+ G +VN Q+  NG T
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 153

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSL 198
           AL  +     + D   LL+  GA         G          +    I   L   T   
Sbjct: 154 ALHLAVDLQ-NPDLVSLLLKCGADVNRVTY-QGYSPYQLTWG-RPSTRIQQQLGQLTLEN 210

Query: 199 EIPNAQGLTPFMLLEEN 215
                +         E+
Sbjct: 211 LQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  154 bits (392), Expect = 2e-43
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 14/184 (7%)

Query: 39  TLLHWAAINNR----IEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 94
           + LH A I+      +E+++      A ++      Q TPLH A      +    L+  G
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEALLGAG 68

Query: 95  ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKV 148
            DP L D  G+T +H A + G    V  L            +   + NG T L  ++   
Sbjct: 69  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLT 207
             L    LL++ GA    Q+  +G  ALH A+    +  +   L+   + +     QG +
Sbjct: 129 -YLGIVELLVSLGADVNAQEPCNGRTALHLAVD-LQNPDLVSLLLKCGADVNRVTYQGYS 186

Query: 208 PFML 211
           P+ L
Sbjct: 187 PYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  135 bits (342), Expect = 1e-36
 Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 10/163 (6%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------TPLHW 77
           + AG D    D    T LH A     +  +            +   L+A      T LH 
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH-LHSILKATNYNGHTCLHL 123

Query: 78  ATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN 136
           A+  G+L  V LL+  GAD    +   G T +H A    +  +V+ L+  G +VN     
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
           G +    +  +  S    + L                    + 
Sbjct: 184 GYSPYQLTWGR-PSTRIQQQLGQLTLENLQMLP-ESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  126 bits (319), Expect = 2e-33
 Identities = 27/125 (21%), Positives = 44/125 (35%)

Query: 21  GKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
                    +   +    T LH A+I+  + I++  +S GA V+A       T LH A  
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160

Query: 81  QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA 140
             + D V LL++ GAD   +  +G +          TRI   L    +            
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220

Query: 141 LMWSA 145
             +  
Sbjct: 221 ESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.2 bits (230), Expect = 2e-21
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 24  VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           V  G DVN  +     T LH A      +++   +  GA V+ +      +P      + 
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRP 195

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
                  L Q   +   M  E         +   T   
Sbjct: 196 STRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.0 bits (206), Expect = 4e-18
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 101 DSEGSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 156
             +G + +H A           ++  +      +N Q+    T L  +       +    
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEA 63

Query: 157 LITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH------TSSLEIPNAQGLTP 208
           L+  G    ++D   GN  LH A   +  +A    L          S L+  N  G T 
Sbjct: 64  LLGAGCDPELRDF-RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 133 QDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
              +G + L  +     K  +++  R +    A    Q+       LH A+   N   I 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVI-TNQPEIA 61

Query: 190 -TLVSHTSSLEIPNAQGLTPFML 211
             L+      E+ + +G TP  L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHL 84

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  158 bits (402), Expect = 1e-43
 Identities = 47/179 (26%), Positives = 65/179 (36%), Gaps = 6/179 (3%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAI-NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
            +               L  AA   N  ++M           A  G    TPLH A    
Sbjct: 11  ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAGYN 69

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
            +  V LL+QHGAD    D  G   +H A  +GH  +   L+  G  VN  D    T L 
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEI 200
            +A K   ++   LL++ GA  T+ +  HG  A+  A          T      S L+ 
Sbjct: 130 EAASK-NRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPT-PELRERLTYEFKGHSLLQA 185

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  136 bits (346), Expect = 6e-36
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 29  DVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
              +      T LH A  +    R ++ +  + +GA V+    D   TPLH A  + H D
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVAAERAHND 261

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
            + +L +HGA    +DS G T +H+AA  GH +    L++ G + ++    G TA     
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321

Query: 146 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN 184
             V      + +++        D    +  L  A  +K 
Sbjct: 322 EAV------QQILSESTPMRTSDV---DYRLLEA--SKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  132 bits (335), Expect = 2e-34
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 20/197 (10%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G D    +    + +  A      E + Y     +             L  A R+  
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------------LLQAAREAD 190

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR---IVAYLVAKGINVNLQDRNGMTA 140
           L  V   +              T +H A    H +   +   L+ KG NVN ++++ MT 
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP 250

Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLE 199
           L  +A +    D   +L   GA     D   G  ALH A     H+     L+S+ S   
Sbjct: 251 LHVAAER-AHNDVMEVLHKHGAKMNALDS-LGQTALHRAAL-AGHLQTCRLLLSYGSDPS 307

Query: 200 IPNAQGLTPFMLLEENI 216
           I + QG T   +  E +
Sbjct: 308 IISLQGFTAAQMGNEAV 324

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  131 bits (332), Expect = 5e-34
 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 6/163 (3%)

Query: 51  EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIH 109
           +         A     G + +   L  A R G+ + ++ LL     +    D   ST +H
Sbjct: 5   KSALDLADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH 63

Query: 110 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK 169
            AA +   RIV  L+  G +V+ +D+ G+  L  +       + T LL+  GA     D 
Sbjct: 64  LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDL 122

Query: 170 IHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
                 LH A   KN V +   L+SH +   + N  G +   +
Sbjct: 123 -WQFTPLHEAAS-KNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (297), Expect = 2e-29
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G +VNE + + +T LH AA     ++M+     GA ++A+    Q T LH A   GH
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGH 292

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L +  LL+ +G+DP+++  +G T      +      V  ++++   +   D +    L+ 
Sbjct: 293 LQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSESTPMRTSDVDY--RLLE 345

Query: 144 SAYK 147
           ++  
Sbjct: 346 ASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           +  G D +    +  T           E ++  +S+   +     D     L  A++ G
Sbjct: 300 LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD---YRLLEASKAG 350

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  152 bits (387), Expect = 2e-43
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 30  VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
            N  DS   T L  A +      +   +     ++    +   T L WA +   L     
Sbjct: 28  RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEK 86

Query: 90  LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF 149
           L+  G++    D  G T +  +  FG++ +  +L+  G NVN ++  G T L+ ++    
Sbjct: 87  LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG- 145

Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
             +  + L+  GA  + +D   G  A   A        +       
Sbjct: 146 RSEIVKKLLELGADISARDL-TGLTAEASARI-FGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  136 bits (345), Expect = 2e-37
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VE    + + D E  T L WA  NNR+ I +  +S+G+ V+      + TPL W+   G+
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGY 113

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            +    L++HGA+    + EG T +  A+++G + IV  L+  G +++ +D  G+TA   
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173

Query: 144 SAYKVFSLDPTRLLI 158
           +       +  ++  
Sbjct: 174 ARIF-GRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  124 bits (313), Expect = 5e-33
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 31  NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
           +  D     +       +  + + +  +     D+       TPL  A   G  +++  L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR---DSYN----RTPLMVACMLGMENAIDKL 54

Query: 91  IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 150
           +++       D EGST +  A +     I   L++KG NVN +D +G T LMWS      
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG-Y 113

Query: 151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 209
            + +  L+  GA+   ++   G   L  A        I   L+   + +   +  GLT  
Sbjct: 114 SEMSYFLLEHGANVNDRNL-EGETPLIVASK-YGRSEIVKKLLELGADISARDLTGLTAE 171

Query: 210 ML 211
             
Sbjct: 172 AS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.5 bits (187), Expect = 6e-16
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G +VN+ + E  T L  A+   R EI+K  +  GA + A       T    A   G 
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGR 179

Query: 84  LDSVVLLIQHGA 95
            + + +  +   
Sbjct: 180 QEVIKIFTEVRR 191

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  151 bits (384), Expect = 3e-43
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 25  EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
             G D+ +        L  AA   R + ++  ++ GA V+A       TPLH A   GHL
Sbjct: 9   HHGSDLGKK-------LLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHL 60

Query: 85  DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
           + V +L+++GAD   +D  G T +  AA FGH  IV  L+  G +VN  D  G T L  +
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

Query: 145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
           A     L+   +L+  GA    QDK  G  A   +I    +  +   L   
Sbjct: 121 AMFG-HLEIVEVLLKNGADVNAQDK-FGKTAFDISID-NGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  137 bits (348), Expect = 4e-38
 Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G DVN  D+   T LH AA N  +EI++  +  GA V+A+      TPL  A   GH
Sbjct: 34  MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGH 92

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           L+ V +L+++GAD    D EG T +H AA FGH  IV  L+  G +VN QD+ G TA   
Sbjct: 93  LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

Query: 144 SAYKVFSLDPTRLLI 158
           S     + D   +L 
Sbjct: 153 SIDN-GNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  119 bits (302), Expect = 8e-32
 Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 4/154 (2%)

Query: 59  QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
           +G+      G      L  A R G  D V +L+ +GAD    D+ G T +H AA  GH  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
           IV  L+  G +VN  D  GMT L  +A     L+   +L+  GA     D   G+  LH 
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFG-HLEIVEVLLKNGADVNANDM-EGHTPLHL 119

Query: 179 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
           A     H+ I   L+ + + +   +  G T F +
Sbjct: 120 AAM-FGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS 58
           ++ G DVN  D    T    +  N   ++ +    
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  154 bits (391), Expect = 1e-42
 Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 32/221 (14%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G D+N  + + +T LH A I++ ++++K+ +  GA ++    +    PLH A   G+
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCGY 118

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK----------------- 126
           LD    LI  GA    ++SEG T +  A +     ++   V +                 
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178

Query: 127 ----------GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL 176
                      IN     ++G TAL  +A K    +  +LLI       I+D   G   L
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKG-YTEVLKLLIQARYDVNIKDY-DGWTPL 236

Query: 177 HWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFMLLEENI 216
           H A +          LV +   +E  N  G T F + +E+I
Sbjct: 237 HAAAH-WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  143 bits (364), Expect = 7e-39
 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 8/182 (4%)

Query: 34  DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
           D++                ++  + +                  A   G  + V+ L++ 
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 94  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
           GAD    + +G T +HQA    +  +V +LV  G N+N  D  G   L  +A     LD 
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDI 121

Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLEIPNAQGLTPFML 211
              LI+ GA     +   G+  L  A   +    +    V+     +E    +     ML
Sbjct: 122 AEYLISQGAHVGAVNS-EGDTPLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERI-ML 178

Query: 212 LE 213
            +
Sbjct: 179 RD 180

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  141 bits (357), Expect = 5e-38
 Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 31/212 (14%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           V   +       +    L   + +   E +   + +GA ++    D   T LH A    +
Sbjct: 28  VVKRKKTKVKFDDGAVFLAACS-SGDTEEVLRLLERGADINYANVDGL-TALHQACIDDN 85

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           +D V  L+++GA+    D+EG   +H AA  G+  I  YL+++G +V   +  G T L  
Sbjct: 86  VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

Query: 144 --------------------------SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
                                        ++   D  + L +   +     K  G  ALH
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALH 204

Query: 178 WAIYAKNHVAITT-LVSHTSSLEIPNAQGLTP 208
            A  AK +  +   L+     + I +  G TP
Sbjct: 205 VAA-AKGYTEVLKLLIQARYDVNIKDYDGWTP 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  110 bits (278), Expect = 3e-27
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 1/111 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
                +         T LH AA     E++K  I     V+    D   TPLH A   G 
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGK 244

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
            ++  +L+++  D   ++  G T    A +     +      + +  + + 
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  149 bits (380), Expect = 5e-42
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 10/192 (5%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
              + + D +    LHW+      EI  + +S+   V+      D   TP H A   G+L
Sbjct: 26  PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85

Query: 85  DSVVLLIQH--GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
           + V  L       D   + ++G TC+H A       +  +L+  G +V ++D+     L 
Sbjct: 86  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145

Query: 143 WSAYKVFSLDPTRLLITFGASTT-IQDKIHGNVALHWAIYAKNHVAIT-TLVS-HTSSLE 199
            +A    SL    LL   G S    QDK  G   L  A+  + H      LV  + +  +
Sbjct: 146 RAASV-GSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALA-EGHGDAAVLLVEKYGAEYD 202

Query: 200 IPNAQGLTPFML 211
           + + +G     +
Sbjct: 203 LVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  141 bits (357), Expect = 9e-39
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 39  TLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 97
             LH A + N   ++ +   S+ +++     D +  PLHW+      +    L+    + 
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENV 62

Query: 98  TLMDS---EGSTCIHQAAQFGHTRIVAYLVAK--GINVNLQDRNGMTALMWSAYKVFSLD 152
            L D     G T  H A   G+  +V  L  +    ++N     G+T L  +  K    +
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFE 121

Query: 153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH-TSSLEIPNAQGLTPFM 210
            ++ LI  GAS  I+DK    + LH A      + +   L     S++   + QG TP  
Sbjct: 122 VSQFLIENGASVRIKDK-FNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

Query: 211 L 211
            
Sbjct: 180 H 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  140 bits (356), Expect = 1e-38
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 27  GQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQ--GAIVDAIGGDLQATPLHWATRQ 81
            ++VN  D       T  H A     +E++K    +     ++ I      T LH A  +
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGK 117

Query: 82  GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN-VNLQDRNGMTA 140
              +    LI++GA   + D      +H+AA  G  +++  L   G + VN QD+ G T 
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177

Query: 141 LMWSAYKVFSLDPTRLLITF-GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
           L  +  +    D   LL+   GA   + D   G  A   A+  +        +++
Sbjct: 178 LFHALAE-GHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALN-EQVKKF--FLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (328), Expect = 1e-34
 Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
              D+N+  ++ VT LH A      E+ ++ I  GA V       Q  PLH A   G L 
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLK 154

Query: 86  SVVLLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMW 143
            + LL   G +     D +G T +  A   GH      LV K G   +L D  G  A   
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

Query: 144 SAYK 147
           +  +
Sbjct: 215 ALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 92.1 bits (230), Expect = 2e-21
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG-AIVDAIGGDLQATPLHWATRQG 82
           +E G  V   D      LH AA    +++++     G + V+        TPL  A  +G
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEG 185

Query: 83  HLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
           H D+ VLL+ ++GA+  L+D++G+     A    + ++  + +
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.7 bits (203), Expect = 7e-18
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 104 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
            +  +HQA        V   L +K   +  +D++G   L WS     + + T  L++   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKME 60

Query: 163 STTIQDKI--HGNVALHWAIYAKNHVAIT-TLVSHTSSLEI--PNAQGLTPFML 211
           +  + D     G    H A     ++ +  +L       ++     QG+T   L
Sbjct: 61  NVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  149 bits (378), Expect = 8e-42
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
           D+      + T         R  ++         V          PLH A ++G+L  + 
Sbjct: 37  DIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQAES-IDNPLHEAAKRGNLSWLR 90

Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYK 147
             + +      +D  GST ++ A   GH  IV  L  +  I +N Q++ G TAL  +A+K
Sbjct: 91  ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 148 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGL 206
               D  +LL+  GA T +++     +A   A       ++        +   + NA+  
Sbjct: 151 G-YADIVQLLLAKGARTDLRNI-EKKLAFDMATN-AACASLLKKKQGTDAVRTLSNAEDY 207

Query: 207 TP 208
             
Sbjct: 208 LD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  147 bits (372), Expect = 6e-41
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 4/157 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +     V E        LH AA    +  ++  +     V+ +      T L+WA   GH
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS-TALYWACHGGH 118

Query: 84  LDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
            D V +L      +    +  G T +H AA  G+  IV  L+AKG   +L++     A  
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA 179
            +          +      A  T+ +     +    +
Sbjct: 179 MATNAA-CASLLKKKQGTDAVRTLSNA-EDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  132 bits (335), Expect = 8e-36
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 11/175 (6%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
             +  A              +   +  I  D+  T     T +G        +       
Sbjct: 14  VKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTG-----LIPSNYVA 67

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
                    +H+AA+ G+   +   +   + VN  D+ G TAL W+ +     D   +L 
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG-HKDIVEMLF 126

Query: 159 T-FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
           T        Q+K  G+ ALH A + K +  I   L++  +  ++ N +    F +
Sbjct: 127 TQPNIELNQQNK-LGDTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  132 bits (334), Expect = 1e-35
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%)

Query: 23  CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQ 81
           C++    VN  D    T L+WA      +I++   +Q    ++     L  T LH A  +
Sbjct: 92  CLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALHAAAWK 150

Query: 82  GHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           G+ D V LL+  GA   L + E       A       ++           L +       
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

Query: 142 MWSAYK 147
             S  +
Sbjct: 211 EDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 99.2 bits (248), Expect = 7e-24
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 25  EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
           +   ++N+ +    T LH AA     +I++  +++GA  D    + +      AT     
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-LAFDMATNAACA 186

Query: 85  DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 116
             +       A  TL ++E       +    H
Sbjct: 187 SLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 9/106 (8%)

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
           G   + +A      R    L  +  ++        T       K       R  +     
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG------RTGLIPSNY 65

Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
              Q +   +  LH A   + +++     + +   +   +  G T 
Sbjct: 66  VAEQAE-SIDNPLHEAAK-RGNLSWLRECLDNRVGVNGLDKAGSTA 109

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 1/62 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G   +  + E       A       ++K      A+      +        +  + H
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE-DYLDDEDSDLEHH 218

Query: 84  LD 85
             
Sbjct: 219 HH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 7/81 (8%), Positives = 15/81 (18%), Gaps = 7/81 (8%)

Query: 131 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 190
               + G   +  + Y  F       L               +         K      T
Sbjct: 6   PKPVKPGQVKVFRALYT-FEPRTPDELYIEEGDIIYITD-MSDTNWWKGTS-KGR----T 58

Query: 191 LVSHTSSLEIPNAQGLTPFML 211
            +  ++ +         P   
Sbjct: 59  GLIPSNYVAEQAESIDNPLHE 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  147 bits (374), Expect = 9e-42
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 34  DSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQ-ATPLHWATRQGHLDSVVLLI 91
             E +  +           ++ ++      ++   GD    +PLHWA R+G    V +LI
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEMLI 59

Query: 92  QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 151
             GA   +M+    T +H AA  GH  IV  L+    ++N  + +G   L ++ +     
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQD 118

Query: 152 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
                L+  GA  +I +K +G + +  A        +       
Sbjct: 119 QVAEDLVANGALVSICNK-YGEMPVDKAKA-PLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  143 bits (363), Expect = 4e-40
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
             D+N+ D    + LHWA    R  +++  I +GA ++    G D   TPLH A   GH 
Sbjct: 29  ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHR 85

Query: 85  DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
           D V  L+Q+ AD   ++  G+  +H A  +G  ++   LVA G  V++ ++ G   +  +
Sbjct: 86  DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

Query: 145 AYKVFSLDPTRLLITFGA 162
              +            G 
Sbjct: 146 KAPL-RELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  115 bits (292), Expect = 3e-30
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G  +N  +    T LH AA +   +I++  +   A ++A+       PLH+A   G 
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQ 117

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
                 L+ +GA  ++ +  G   + +A       +       G N+N
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 93.3 bits (233), Expect = 3e-22
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++   D+N  +      LH+A    + ++ +  ++ GA+V       +  P+  A     
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE-MPVDKAKAPLR 150

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
                   + G +                  G TR
Sbjct: 151 ELLRERAEKMGQNL------NRIPYKDTFWKGTTR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  152 bits (387), Expect = 2e-41
 Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 33/211 (15%)

Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
           +  + D E +  +H AA   + + ++  I  G            T LH A + G +D+  
Sbjct: 12  NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAK 70

Query: 89  LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG--------------------- 127
            L   G   +L    G   IH A     T +V  LV                        
Sbjct: 71  YLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE 128

Query: 128 INVNLQDRNGMTALMWSAYK-VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           I  +++   G TAL W        L+  ++L+  GAS T +DK      L  A+    + 
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAME-FRNR 186

Query: 187 AITTL------VSHTSSLEIPNAQGLTPFML 211
               L         +  L+  N QG +    
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  141 bits (357), Expect = 3e-37
 Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 21/206 (10%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFI-----SQGAIVDAIGGDLQATPLHWA 78
           V+ G      D    T L  A      E +   +          +D        + LHWA
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWA 218

Query: 79  TRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--- 135
                 D  +  ++ G D  + D+E +  ++ + +     +   L+ K     +Q     
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 136 NGMTALMWSAYKVFSL---------DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           NG T L      +  +         +  +LL              G          K   
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN-TGAGGAVKRKK-KAAP 336

Query: 187 AIT-TLVSHTSSLEIPNAQGLTPFML 211
           A+    ++ ++ +   +        +
Sbjct: 337 AVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (325), Expect = 6e-33
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 27/196 (13%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG- 82
           VE  ++  +               +  E+ +     G+ V    G    T LHW    G 
Sbjct: 104 VEGAKERGQ------MPESLLNECDEREVNEI----GSHVKHCKGQ---TALHWCVGLGP 150

Query: 83  -HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-----AKGINVNLQDRN 136
            +L+ + +L+Q GA PT  D    T + +A +F +   +  ++        + ++  ++ 
Sbjct: 151 EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210

Query: 137 GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHT 195
           G + L W+       D     +  G    ++D     V L+ ++     V +T  L+  T
Sbjct: 211 GNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVR-AAMVLLTKELLQKT 267

Query: 196 SSLEIPNAQ---GLTP 208
               I       G T 
Sbjct: 268 DVFLIQACPYHNGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  115 bits (290), Expect = 3e-28
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 33/182 (18%)

Query: 59  QGAIVDAIGGDLQA------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA 112
            G++ D    +           +H A R+G  D V  LI+ G  PT+ +  G T +H A 
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61

Query: 113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST-------- 164
           +FG      YL + G   +    +G   +  +       D    L+              
Sbjct: 62  KFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLL 118

Query: 165 -------------TIQDKIHGNVALHWAI-YAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 209
                         ++    G  ALHW +     ++ +   LV   +S    +    TP 
Sbjct: 119 NECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177

Query: 210 ML 211
           M 
Sbjct: 178 MR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 90.3 bits (225), Expect = 8e-20
 Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 1/85 (1%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G  V       +  +  AA  ++ E+++    +   V                ++     
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA-GGAVKRKKKAAPAV 338

Query: 87  VVLLIQHGADPTLMDSEGSTCIHQA 111
             + +   A         +     +
Sbjct: 339 KRMKLAPSAPVRTRSRSRARSSAVS 363

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  145 bits (368), Expect = 3e-41
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 5/153 (3%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
             L  AA   + + ++  ++ GA        L  +PLH A + GH  +  +L++ G    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
                  T +H AA  GH  IV  L+  G +VN +D   MTAL W+       +   LLI
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLI 120

Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 191
            +GA    Q K     A   +I    +  +  +
Sbjct: 121 KYGADVHTQSK-FCKTAFDISID-NGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  129 bits (326), Expect = 3e-35
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G      D    + LH AA        +  +  G   DA     + TPLH A  +GH + 
Sbjct: 25  GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANI 82

Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
           V +L++HGAD    D    T +H A +  H  +V  L+  G +V+ Q +   TA   S  
Sbjct: 83  VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142

Query: 147 K 147
            
Sbjct: 143 N 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  110 bits (279), Expect = 8e-29
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
             L  A R G  D V +L+ +GA  T  D  G++ +H AAQ+GH      L+  G++ + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 191
           + +   T L  +A +    +   +L+  GA    +D      ALHWA    NH  +   L
Sbjct: 63  RTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAKDM-LKMTALHWATE-HNHQEVVELL 119

Query: 192 VSHTSSLEIPNAQGLTPFML 211
           + + + +   +    T F +
Sbjct: 120 IKYGADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  105 bits (264), Expect = 1e-26
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           + AG   +       T LH AA      I++  +  GA V+A       T LHWAT   H
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM-TALHWATEHNH 112

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
            + V LLI++GAD         T    +   G+  +   L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
           +    + +AA+ G    V  L+A G      D  G + L  +A        T +L+  G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGV 58

Query: 163 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
           S   + K      LH A   + H  I   L+ H + +   +   +T    
Sbjct: 59  SRDARTK-VDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTALHW 106

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  145 bits (369), Expect = 3e-41
 Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 10/170 (5%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQGHLD 85
           G   N  +++    L  AA    +E +K   +  ++    I G    TPLH+A     + 
Sbjct: 1   GAMGNS-EADRQ--LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVS 56

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
            V  L+QHGAD    D  G   +H A  +GH  +   LV  G  VN+ D    T L  +A
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116

Query: 146 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
            K    +  +LL+  GA  T +++  GN  L           I   L   
Sbjct: 117 AK-GKYEICKLLLQHGADPTKKNR-DGNTPLDLV--KDGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  138 bits (351), Expect = 1e-38
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
             +  + +    T LH+AA  NR+ +++Y +  GA V A   GG     PLH A   GH 
Sbjct: 32  SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL---VPLHNACSYGHY 88

Query: 85  DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
           +   LL++HGA   + D    T +H+AA  G   I   L+  G +   ++R+G T L   
Sbjct: 89  EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148

Query: 145 AYKVFSLDPTRLLITFGA 162
                  D   LL    A
Sbjct: 149 KDG--DTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (283), Expect = 3e-29
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 60  GAIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTR 118
           GA+ ++         L  A + G +++V  L      +   ++   ST +H AA +    
Sbjct: 1   GAMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56

Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
           +V YL+  G +V+ +D+ G+  L  +       +   LL+  GA   + D       LH 
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYG-HYEVAELLVKHGAVVNVADL-WKFTPLHE 114

Query: 179 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 215
           A   K    I   L+ H +     N  G TP  L+++ 
Sbjct: 115 AAA-KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           V+ G  VN  D    T LH AA   + EI K  +  GA       D   TPL    + G 
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN-TPLDLV-KDGD 152

Query: 84  LDSVVLLIQHGA 95
            D   LL    A
Sbjct: 153 TDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 1/36 (2%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 62
           G D  + + +  T L     +   +I        A+
Sbjct: 131 GADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 165

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  145 bits (369), Expect = 3e-41
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
             L  AA    +E +   +     V+A  G  + T L    + G+ +    L+  GA+P 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRGANPD 64

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
           L D  G   IH AA+ G    +  L+    +VN++D  G   L  +A +   L     L+
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLV 123

Query: 159 TFGAST-TIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
              AS    ++   G+ A   A        +   + ++
Sbjct: 124 KHTASNVGHRNH-KGDTACDLARL-YGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  130 bits (330), Expect = 1e-35
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++   +VN  +    T L    + N  EI +  + +GA  D          +H A R G 
Sbjct: 25  LQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGF-AVIHDAARAGF 82

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALM 142
           LD++  L++  AD  + D+EG+  +H AA+ GH R+V +LV     NV  ++  G TA  
Sbjct: 83  LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142

Query: 143 WSAYKVFSLDPTRLLITFGA 162
            +       +   L+   GA
Sbjct: 143 LARLY-GRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 83.6 bits (208), Expect = 4e-19
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
           M       +  AA  G    +  L+   +NVN Q+  G TAL        + +  R L+ 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG--NPEIARRLLL 58

Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
            GA+  ++D+  G   +H A      +    TL+   + + I + +G  P  L
Sbjct: 59  RGANPDLKDR-TGFAVIHDAAR-AGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  143 bits (363), Expect = 8e-41
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 4/138 (2%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
               ++     +   L  AA   ++E ++  +  GA  +A+    +  P+      G   
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMM-MGSAQ 58

Query: 86  SVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
              LL+ HGA+P   D    T  +H AA+ G    +  L   G  +++ D  G   +  +
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

Query: 145 AYKVFSLDPTRLLITFGA 162
             +    D  R L     
Sbjct: 119 EEQG-HRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (297), Expect = 2e-31
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 60  GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRI 119
              +  +GG      L  A  +G +++V  L++ GADP  ++  G   I      G  ++
Sbjct: 2   SPGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 120 VAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
              L+  G   N  D   +T  +  +A +   LD   +L   GA   + D   G + +  
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDL 117

Query: 179 AIYAKNHVAIT-TLVSH 194
           A   + H  I   L + 
Sbjct: 118 AEE-QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  115 bits (291), Expect = 1e-30
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +EAG D N  +      +         ++ +  +  GA  +         P+H A R+G 
Sbjct: 32  LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
           LD++V+L + GA   + D+ G   +  A + GH  I  YL A  
Sbjct: 91  LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 4/119 (3%)

Query: 94  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
                ++       +  AA  G    V  L+  G + N  +R G   +        S   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG--SAQV 59

Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
             LL+  GA     D       +H A   +  +     L    + L++ +A G  P  L
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 24  VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           +  G + N  D  T+T  +H AA    ++ +      GA +D      +  P+  A  QG
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR-LPVDLAEEQG 122

Query: 83  HLDSVVLLIQHGAD 96
           H D    L     D
Sbjct: 123 HRDIARYLHAATGD 136

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  143 bits (363), Expect = 2e-40
 Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 13/166 (7%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E     +   S     L  AA   R+E ++  +  GA  +A     +  P+      G 
Sbjct: 1   MEPAAGSSMEPSADW--LATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMMM-GS 56

Query: 84  LDSVVLLIQHGADPTLMDSEGSTC-IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
                LL+ HGA+P   D    T  +H AA+ G    +  L   G  ++++D  G   + 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
            +       D  R L      T   +             A+    I
Sbjct: 117 LAEELG-HRDVARYLRAAAGGTRGSNH------ARIDA-AEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  116 bits (294), Expect = 7e-31
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 57  ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 116
           +   A             L  A  +G ++ V  L++ GA+P   +S G   I      G 
Sbjct: 1   MEPAAGSSMEPSA---DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56

Query: 117 TRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVA 175
            R+   L+  G   N  D   +T  +  +A + F LD   +L   GA   ++D   G + 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGF-LDTLVVLHRAGARLDVRDA-WGRLP 114

Query: 176 LHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
           +  A     H  +   L +        N   +  
Sbjct: 115 VDLAEE-LGHRDVARYLRAAAGGTRGSNHARIDA 147

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.1 bits (248), Expect = 1e-24
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 24  VEAGQDVNEPDSETVTL-LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           +  G + N  D  T+T  +H AA    ++ +      GA +D      +  P+  A   G
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELG 122

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           H D    L             GS      A  G + I 
Sbjct: 123 HRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 93.3 bits (233), Expect = 2e-22
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 91  IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS 150
           ++  A  ++     +  +  AA  G    V  L+  G N N  +  G   +        S
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG--S 56

Query: 151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPF 209
                LL+  GA     D       +H A   +  +     L    + L++ +A G  P 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVRDAWGRLPV 115

Query: 210 ML 211
            L
Sbjct: 116 DL 117

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  145 bits (367), Expect = 3e-40
 Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 7/203 (3%)

Query: 14  ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
           EL +  +             D ++ T LHWA      EI+++ +  G  V+        +
Sbjct: 21  ELKERILAD----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-S 75

Query: 74  PLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
           PLH A   G  + V  L+  GA    ++  G T +H AA      I   L+  G N + +
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135

Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS 193
           D    TA+  +A K  +L    +L+ + AST IQD   GN  LH A   +       LV+
Sbjct: 136 DHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVT 193

Query: 194 HTSSLEIPNAQGLTPFMLLEENI 216
             +S+ I N +  TP  + +  +
Sbjct: 194 QGASIYIENKEEKTPLQVAKGGL 216

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  144 bits (364), Expect = 9e-40
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 3/177 (1%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
            + + A      E+ +  ++  ++      D   T LHWA   GH + V  L+Q G    
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
             D  G + +H AA  G   IV  L+ KG +VN  ++NG T L ++A K    +   +L+
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLL 126

Query: 159 TFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
             GA+   +D  +   A+H A    N   +  L+ + +S  I + +G TP  L  + 
Sbjct: 127 EGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  124 bits (313), Expect = 9e-33
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 5/171 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++ G  VN+ D    + LH AA     EI+K  + +GA V+A+  +   TPLH+A  +  
Sbjct: 60  LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNR 118

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            +  V+L++ GA+P   D   +T +H+AA  G+ ++V  L+    + N+QD  G T L  
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
           +  +   ++  + L+T GAS  I++K      L  A        I   ++ 
Sbjct: 179 ACDEE-RVEEAKFLVTQGASIYIENK-EEKTPLQVA--KGGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +E G + +  D    T +H AA    ++++   +   A  +    +   TPLH A  +  
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEER 184

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           ++    L+  GA   + + E  T +  A   G   ++   +A+G   ++
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 2/112 (1%)

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
                + A       +   ++A        D++  TAL W+       +    L+  G  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVP 65

Query: 164 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
              +D   G   LH A  A     +  L+   + +   N  G TP       
Sbjct: 66  VNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  146 bits (371), Expect = 5e-40
 Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 18/196 (9%)

Query: 28  QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV 87
           + ++  +    T LH AAI      ++   + GA V         T LH A R       
Sbjct: 36  EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCA 94

Query: 88  VLLIQHGADPTLMDSEGSTC--------------IHQAAQFGHTRIVAYLVAKGINVNLQ 133
            +L+Q         S+                     +                + +  +
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLV 192
           + +G T L  +       +  RLL   GA     +   G   LH A+      ++   L+
Sbjct: 155 NYDGHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLL 212

Query: 193 SHTSSLEIPNAQGLTP 208
              +        G TP
Sbjct: 213 KAGADPTARMYGGRTP 228

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  143 bits (362), Expect = 9e-39
 Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 18/203 (8%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA----------- 72
             AG  V   +    T LH A            +           D              
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 73  -TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
             P    ++    +                + +G T +H A       +V  L   G ++
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 131 NLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
           N  +   G T L  +     +     LL+  GA  T +    G   L  A+  + +  + 
Sbjct: 185 NKPEPTCGRTPLHLAVEA-QAASVLELLLKAGADPTARMY-GGRTPLGSALL-RPNPILA 241

Query: 190 -TLVSHTSSLEIPNAQGLTPFML 211
             L +H +         L+P   
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  142 bits (360), Expect = 2e-38
 Identities = 27/124 (21%), Positives = 46/124 (37%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
            +    +   + +  T LH A I+   E+++     GA ++        TPLH A     
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
              + LL++ GADPT     G T +  A    +  +   L A G        + ++    
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264

Query: 144 SAYK 147
           S   
Sbjct: 265 SGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  136 bits (344), Expect = 2e-36
 Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 19/190 (10%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
           T LH A I+     + + +   A  + +    DL  T LH A   G   +V  L   GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 97  PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-------------RNGMTALMW 143
             + +  G T +H A +         L+    +                           
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPN 202
            +      +       +      ++   G+  LH A+       +   L    + L  P 
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPE 188

Query: 203 A-QGLTPFML 211
              G TP  L
Sbjct: 189 PTCGRTPLHL 198

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (260), Expect = 7e-25
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 24  VEAGQDVNEPDSET-VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
            +AG D+N+P+     T LH A       +++  +  GA   A     + TPL  A  + 
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRP 236

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           +     LL  HGA       +  +    +     +   
Sbjct: 237 NPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.7 bits (200), Expect = 4e-17
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 157
             +G T +H A    H   + +L+        ++LQ+  G TAL  +A           L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKL 64

Query: 158 ITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
              GA   + ++  G+ ALH A            L+    S     +     
Sbjct: 65  YAAGAGVLVAER-GGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDTYLT 114

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++AG D         T L  A +     + +   + GA     GGD   +P   +     
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL-SPCSSSGSDSD 270

Query: 84  LDSVVLLIQHG 94
            D+     ++ 
Sbjct: 271 SDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTT---IQDKIHGNVALHWAIYAKNHV 186
                 +G TAL  +            L+ F A      +Q+   G  ALH A       
Sbjct: 2   FGYVTEDGDTALHLAVIHQ-HEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAI-LGEA 58

Query: 187 AIT-TLVSHTSSLEIPNAQGLTPFML 211
           +    L +  + + +    G T   L
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHL 84

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  143 bits (363), Expect = 1e-39
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 8/193 (4%)

Query: 24  VEAGQDVNEPDSET---VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
           +       +        + LL  AA+   +E+++  + +         +   T LH A  
Sbjct: 5   LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI-TALHNAIC 63

Query: 81  QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GMT 139
             +   V  LI  GA+    DS G T +H AA    T I   LV  G  +     + G T
Sbjct: 64  GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT 123

Query: 140 ALMW-SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL 198
           A      Y+    D    L     S  + +      AL     A+    ++     + ++
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNS-GAVYALWDYS-AEFGDELSFREGESVTV 181

Query: 199 EIPNAQGLTPFML 211
              +    T +  
Sbjct: 182 LRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  137 bits (346), Expect = 4e-37
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 8/168 (4%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           V+   D ++P+ E +T LH A       I+ + I+ GA V++       TPLH A     
Sbjct: 41  VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASCND 99

Query: 84  LDSVVLLIQHGADPTLMD-SEGSTCIHQAAQF--GHTRIVAYLVAKGINVNLQDRNGMTA 140
               + L+QHGA       S+G+T   +   +  G+     YL     ++ L +   + A
Sbjct: 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159

Query: 141 LMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
           L   + +    D          +   +D         WA         
Sbjct: 160 LWDYSAE--FGDELSFREGESVTVLRRDG-PEETDWWWAAL-HGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  129 bits (327), Expect = 1e-34
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 53  MKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ 110
           M+  + +                 L  A   G L+ V   ++   DP+  + EG T +H 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 111 AAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI 170
           A    +  IV +L+  G NVN  D +G T L  +A           L+  GA+       
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLS 119

Query: 171 HGNVALHWAIYAKN-HVAITT-LVSHTSSLEIPNAQGLTP 208
            G  A       +  +    T L     S+ + N+  +  
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 14/117 (11%), Positives = 21/117 (17%), Gaps = 6/117 (5%)

Query: 24  VEAGQDVNEPDSET-VTLLHWAAI--NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATR 80
           V+ G  +         T             +   Y       +  +        L   + 
Sbjct: 107 VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV-YALWDYS- 164

Query: 81  QGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRN 136
               D +             D    T    AA  G    V          V  Q   
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSK 221

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  141 bits (359), Expect = 1e-39
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 10/167 (5%)

Query: 30  VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
            +    E          +             A V +       TP   A R+    ++  
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQ 62

Query: 90  LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV 148
           L+    D   +D  G T +   A  G  + V  L   G +++ +D R G+TAL  +A  V
Sbjct: 63  LL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
              +    L+  GA   ++D+  G  AL  A             +  
Sbjct: 122 -RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  136 bits (344), Expect = 2e-37
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
                DV        T    AA     + +   +     VDA+  +   T L +    G 
Sbjct: 34  SYIAADVVSEYE---TPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGS 88

Query: 84  LDSVVLLIQHGADPTLMDSE-GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
              V LL + GAD    D   G T +H AA +    +V  LV  G ++ ++D  G+TAL 
Sbjct: 89  DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 148

Query: 143 WSAYKVFSLDPTRLLITFGA 162
            +   +    P    + FG 
Sbjct: 149 LAREIL-KTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  122 bits (308), Expect = 2e-32
 Identities = 25/109 (22%), Positives = 41/109 (37%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
             +DV+  D    T L + A     + ++     GA +D        T LH A      +
Sbjct: 65  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 124

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
            V  L++ GAD  + D  G T +  A +   T      +  G  + L+ 
Sbjct: 125 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  118 bits (299), Expect = 3e-31
 Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 8/154 (5%)

Query: 59  QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR 118
              I     G+  A       + GH  S V      AD   + SE  T    AA+    +
Sbjct: 3   NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58

Query: 119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHW 178
            ++ L+ +  +V+  D NG TAL++ A    S    RLL   GA    +D   G  ALH 
Sbjct: 59  ALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 179 AIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
           A        +   LV   + +E+ + +GLT   L
Sbjct: 117 AAG-YVRPEVVEALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 65
           VE G D+   D   +T L  A    +       +  G  +  
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  147 bits (373), Expect = 2e-39
 Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 20/205 (9%)

Query: 23  CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           C+ AG DVN  D +  T L  A +  R  ++ Y +  GA         + + LH A    
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER-SALHQAAANR 210

Query: 83  HLDSVVLLIQH---GADPTLMDSEGSTCIHQAAQFGHT---RIVAYLVAKGINVNL---- 132
               +V ++       D   +D  G T +   A             LV KG  V+     
Sbjct: 211 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

Query: 133 ----QDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQDKIHGNVALHWAIYAKNHVA 187
               +   G TAL ++A    ++   + L+   G++   QD+  G   +  A   +  + 
Sbjct: 271 RKDSEKYKGRTALHYAAQV-SNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQ-EGRIE 327

Query: 188 IT-TLVSHTSSLEIPNAQGLTPFML 211
           +   L+   +S+E  +A   T   L
Sbjct: 328 VVMYLIQQGASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  144 bits (365), Expect = 2e-38
 Identities = 41/211 (19%), Positives = 70/211 (33%), Gaps = 29/211 (13%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQG 82
               Q   EP+ E+   LH  A      I +    +   I+D        T LHW     
Sbjct: 81  HTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNR---TVLHWIASNS 136

Query: 83  HLDSVVLLIQH--------GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
             +    LI H        GAD   MD + +T +  A      R+VAYL+  G +  + +
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196

Query: 135 RNGMTALMWSAYKVFSLDPTRLLI---TFGASTTIQDKIHGNVALHWAIYAKNHVAITT- 190
           ++  +AL  +A           ++            D+ +G  AL    + +    + + 
Sbjct: 197 KSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASA 254

Query: 191 --LVSH--------TSSLEIPNAQGLTPFML 211
             LV           +  +    +G T    
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  143 bits (363), Expect = 4e-38
 Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 27/211 (12%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEI--------MKYFISQGAIVDAIGGDLQATPL 75
                ++ +P     T+LHW A N+  E          K  I+ GA V+A+  D   TPL
Sbjct: 113 TRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN-TPL 170

Query: 76  HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK---GINVNL 132
             A        V  L++ GADPT+ +    + +HQAA      ++ Y++       ++  
Sbjct: 171 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230

Query: 133 QDRNGMTALMWSAYKVF--SLDPTRLLITFGA--------STTIQDKIHGNVALHWAIYA 182
            DRNGMTALM  A+      +   +LL+  GA            +    G  ALH+A   
Sbjct: 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQ- 288

Query: 183 KNHVAIT-TLVSHT-SSLEIPNAQGLTPFML 211
            +++ I   LV    S+ +  +  G TP ML
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  143 bits (363), Expect = 4e-38
 Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 20/187 (10%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ---GAIVDAIGGDLQATPLHWATR 80
           ++AG D    +    + LH AA N    +M Y ++       ++ +  +   T L     
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM-TALMIVAH 244

Query: 81  QGHLDSVV---LLIQHGADPTLM--------DSEGSTCIHQAAQFGHTRIVAYLVA-KGI 128
               D V    LL++ GA               +G T +H AAQ  +  IV YLV  KG 
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304

Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
           N + QD +G T +M +A +   ++    LI  GAS    D    + A   A    NH  I
Sbjct: 305 NKDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQGASVEAVDA-TDHTARQLAQA-NNHHNI 361

Query: 189 T-TLVSH 194
                  
Sbjct: 362 VDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  142 bits (359), Expect = 2e-37
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 18/194 (9%)

Query: 30  VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL 89
            NE    ++        N    +  +  +   I      +     LH     G       
Sbjct: 54  RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPE-SPIKLHTEA-AGSYAITEP 111

Query: 90  LIQHGADPTLMDSEGSTCIHQAAQFGHTRIV--------AYLVAKGINVNLQDRNGMTAL 141
           + +   +         T +H  A                   +A G +VN  D +  T L
Sbjct: 112 ITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170

Query: 142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSS--- 197
           M +            L+  GA  TI +K     ALH A        +   +++ T     
Sbjct: 171 MLAVLAR-RRRLVAYLMKAGADPTIYNK-SERSALHQAAA-NRDFGMMVYMLNSTKLKGD 227

Query: 198 LEIPNAQGLTPFML 211
           +E  +  G+T  M+
Sbjct: 228 IEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (327), Expect = 4e-33
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%)

Query: 25  EAGQDVNEPDSETVTLLHWAAINN---RIEIMKYFISQGAIVDAIGGDLQA-------TP 74
           +   D+ E D   +T L   A N    ++   K  + +GA VD  G   +        T 
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 75  LHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ 133
           LH+A +  ++  V  L+ + G++    D +G T I  AAQ G   +V YL+ +G +V   
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342

Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGA 162
           D    TA   +       +   +      
Sbjct: 343 DATDHTARQLAQAN-NHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  104 bits (262), Expect = 1e-24
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 24  VEAGQDVNEPDSETV--------TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATP 74
           VE G  V+   +           T LH+AA  + + I+KY + + G+  D    D + TP
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TP 316

Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
           +  A ++G ++ V+ LIQ GA    +D+   T    A    H  IV          
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 94.6 bits (236), Expect = 4e-21
 Identities = 26/148 (17%), Positives = 40/148 (27%), Gaps = 23/148 (15%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
             L  A+  G++      +QH                Q    G+  +  +          
Sbjct: 39  HSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TL 191
            +      L   A    S   T  +     +  I D  H    LHW     +    +  L
Sbjct: 90  PEPESPIKLHTEAAG--SYAITEPITRESVN--IIDPRHNRTVLHWIAS-NSSAEKSEDL 144

Query: 192 VSHTSSLEI-----PNAQ---GLTPFML 211
           + H +   I      NA      TP ML
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVD 64
           ++ G  V   D+   T    A  NN   I+  F       +
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  142 bits (360), Expect = 4e-39
 Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 29/195 (14%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ----ATPLHWATRQG 82
           G +V++  +   T LH AA+ + +E     +     +       +     T LH A    
Sbjct: 27  GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86

Query: 83  HLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
           +++ V  L+  GA              P  +   G   +  AA  G   IV  L+  G +
Sbjct: 87  NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146

Query: 130 VNLQDRNGMTALMWSAY---KVFSLDPTRLLITFGA------STTIQDKIHGNVALHWAI 180
           +  QD  G T L        K F+     LL+++           + +   G      A 
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAG 205

Query: 181 YAKNHVAIT-TLVSH 194
             + ++ +   L+  
Sbjct: 206 V-EGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  137 bits (348), Expect = 2e-37
 Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 34/203 (16%)

Query: 39  TLLHWAAINNRIE-IMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD- 96
           + L  AA  N ++ + K    +G  V   G   + T LH A    +L++ ++L++   + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPEL 63

Query: 97  ----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMT 139
                T    EG T +H A    +  +V  L+A+G +V+ +                G  
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-----LVSH 194
            L ++A    S +  RLLI  GA    QD   GN  LH  I  + +          L+S+
Sbjct: 124 PLSFAACV-GSEEIVRLLIEHGADIRAQDS-LGNTVLHILIL-QPNKTFACQMYNLLLSY 180

Query: 195 ------TSSLEIPNAQGLTPFML 211
                  S   +PN QGLTPF L
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  102 bits (256), Expect = 7e-25
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 73  TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV- 130
           +PL  A ++  + ++  LL   G +     + G T +H AA + +      L+     + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 131 ----NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK------------IHGNV 174
                 +   G TAL  +     +++  R L+  GAS + +               +G  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 175 ALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 215
            L +A        I   L+ H + +   ++ G T   +L   
Sbjct: 124 PLSFAAC-VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEI----MKYFISQGAIVDAIGGDLQA-----TP 74
           +E G D+   DS   T+LH   +              +S          +L       TP
Sbjct: 141 IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200

Query: 75  LHWATRQGHLDSVVLLIQHGADP 97
              A  +G++     L+Q     
Sbjct: 201 FKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 67.2 bits (165), Expect = 8e-13
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 104 GSTCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
             + +  AA+    + ++  L  +G  V+ +   G TAL  +A    +L+   +L+    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAP 61

Query: 163 -----STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
                  T +    G  ALH A+    +V +   L++ 
Sbjct: 62  ELVFEPMTSELY-EGQTALHIAVI-NQNVNLVRALLAR 97

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  140 bits (356), Expect = 2e-38
 Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 19/210 (9%)

Query: 31  NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL 90
           +    E          +             A V +       TP   A R+    ++  L
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQL 64

Query: 91  IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVF 149
           +    D   +D  G T +   A  G  + V  L   G +++ +D R G+TAL  +A  V 
Sbjct: 65  L-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV- 122

Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
             +    L+  GA   ++D+  G  AL  A             +     +     + +  
Sbjct: 123 RPEVVEALVELGADIEVEDE-RGLTALELARE-ILKTTPKGNPMQFGRRI---GLEKVIN 177

Query: 209 FMLLEENIGAPWLGKATVDKITELKDHYNT 238
            +             A VD+I E +     
Sbjct: 178 VLE------GQVFEYAEVDEIVEKRGKGKD 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  135 bits (343), Expect = 1e-36
 Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
             +DV+  D    T L + A     + ++     GA +D        T LH A      +
Sbjct: 66  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR---------- 135
            V  L++ GAD  + D  G T +  A +   T      +  G  + L+            
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185

Query: 136 ------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK 183
                        G        +K    D   +     A    +D       L +A+ A+
Sbjct: 186 YAEVDEIVEKRGKGKDVEYLVRWKD-GGDCEWVKGVHVAEDVAKDY---EDGLEYAV-AE 240

Query: 184 NHVA 187
           + + 
Sbjct: 241 SVIG 244

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  117 bits (296), Expect = 3e-30
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 62  IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVA 121
           I+ +      A       + GH  S V      AD   + SE  T    AA+    + ++
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALS 62

Query: 122 YLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY 181
            L+ +  +V+  D NG TAL++ A    S    RLL   GA    +D   G  ALH A  
Sbjct: 63  QLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120

Query: 182 AKNHVAIT-TLVSHTSSLEIPNAQGLTPFMLLEEN 215
                 +   LV   + +E+ + +GLT   L  E 
Sbjct: 121 -YVRPEVVEALVELGADIEVEDERGLTALELAREI 154

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 82.3 bits (204), Expect = 7e-18
 Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 14/124 (11%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           VE G D+   D   +T L  A    +       +  G  +       +   +       +
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE----KVINVLEGQVFEY 186

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
            +   ++ + G         G    +                       +D      L +
Sbjct: 187 AEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEY 236

Query: 144 SAYK 147
           +  +
Sbjct: 237 AVAE 240

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  137 bits (347), Expect = 4e-38
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 39  TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP 97
             L  AA    ++ ++  + +     DA+      T L      G     + L++ GA P
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMF-GSTAIALELLKQGASP 61

Query: 98  TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLL 157
            + D+ G++ +H AA+ G    +  LV  G +VN+ D  G   +  +  +         L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFL 120

Query: 158 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSH 194
               +    +D   G   L  A+  +    +   L  H
Sbjct: 121 AA-ESDLHRRDA-RGLTPLELALQ-RGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  131 bits (333), Expect = 3e-36
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
               +  +    T L          I    + QGA  +        +P+H A R G LD+
Sbjct: 26  LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGT-SPVHDAARTGFLDT 83

Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
           + +L++HGAD  + D  G+  IH A Q GHT +V++L     +++ +D  G+T L  +  
Sbjct: 84  LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ 142

Query: 147 KVFSLDPTRLLI 158
           +  + D   +L 
Sbjct: 143 R-GAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  100 bits (252), Expect = 4e-25
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++ G   N  D+   + +H AA    ++ +K  +  GA V+   G     P+H A ++GH
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGH 113

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
              V  L    +D    D+ G T +  A Q G   +V  L 
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 82.8 bits (206), Expect = 6e-19
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 104 GSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
               +  AA  G  + V  L+  + ++ +  +R G TAL    +   S      L+  GA
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG--STAIALELLKQGA 59

Query: 163 STTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
           S  +QD   G   +H A      +     LV H + + +P+  G  P  L
Sbjct: 60  SPNVQDT-SGTSPVHDAAR-TGFLDTLKVLVEHGADVNVPDGTGALPIHL 107

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQ 59
           A  D++  D+  +T L  A      +++      
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  134 bits (341), Expect = 1e-37
 Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 2/124 (1%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH AA N  +E++K  +  GA V+A   +   TPLH A R GHL+ V LL++ GAD  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
             D  G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLL 121

Query: 159 TFGA 162
             GA
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  113 bits (287), Expect = 3e-30
 Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +EAG DVN  D    T LH AA N  +E++K  +  GA V+A   + + TPLH A R GH
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
           L+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G
Sbjct: 81  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.9 bits (196), Expect = 8e-18
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60

Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
              +DK +G   LH A     H+ +   L+   + +   +  G TP
Sbjct: 61  VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTP 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.3 bits (114), Expect = 8e-07
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 61
           +EAG DVN  D    T LH AA N  +E++K  +  GA
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
           NG T L  +A     L+  +LL+  GA    +DK +G   LH A     H+ +   L+  
Sbjct: 1   NGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57

Query: 195 TSSLEIPNAQGLTPFML 211
            + +   +  G TP  L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  131 bits (333), Expect = 1e-36
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
               WA  N  ++ +K ++++G  V+    GG     PLH+A   G L+ +  L+  GAD
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR---KPLHYAADCGQLEILEFLLLKGAD 65

Query: 97  PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV 148
               D    T +  A   GH   V  L++KG +  ++  +G+TA   +  + 
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  116 bits (294), Expect = 3e-31
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
               WA + G LD V   +  G D       G   +H AA  G   I+ +L+ KG ++N 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
            D++ +T L+ + Y+   +   +LL++ GA  T++    G  A       +   A+
Sbjct: 69  PDKHHITPLLSAVYEG-HVSCVKLLLSKGADKTVKGP-DGLTAFEATDN-QAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (275), Expect = 1e-28
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           V  G+DVN         LH+AA   ++EI+++ + +GA ++A       TPL  A  +GH
Sbjct: 27  VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAVYEGH 85

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           +  V LL+  GAD T+   +G T            ++
Sbjct: 86  VSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.3 bits (215), Expect = 2e-20
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
           + S        A + G    V   VAKG +VN     G   L ++A     L+    L+ 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLL 61

Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
            GA     DK H    L  A+Y + HV+    L+S  +   +    GLT F  
Sbjct: 62  KGADINAPDK-HHITPLLSAVY-EGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  132 bits (334), Expect = 1e-36
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHL 84
           G D    +    TLLH A+I   I  ++Y +  G+  +     G    TPLH A   GHL
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHL 56

Query: 85  DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
             V LL+QH A       +  + +H AA+ GH  IV  L++ G + N  +  G+  + ++
Sbjct: 57  KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

Query: 145 AYKVFSLDPTRLLITFGASTT 165
             +        L     +S+ 
Sbjct: 117 DDES-MKSLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  119 bits (300), Expect = 6e-32
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           T LH A+ +G + SV  L+Q+G+DP + D  G T +H+A   GH ++V  L+     VN 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 191
                 + L  +A     +D  +LL+++GAS    +   G   + +    ++  ++  L
Sbjct: 72  TGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDD-ESMKSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  109 bits (276), Expect = 1e-28
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++ G D N  D    T LH A  +  +++++  +   A+V+  G     +PLH A + GH
Sbjct: 30  LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPLHDAAKNGH 88

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
           +D V LL+ +GA    ++  G   +          ++       
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 94  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
           G DP   +  G T +H A+  G    V YL+  G + N++D  G T L  +      L  
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKV 58

Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQGLTPFML 211
             LL+   A          +  LH A     HV I   L+S+ +S    N  GL P   
Sbjct: 59  VELLLQHKALVNTTGY-QNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 2/39 (5%), Positives = 11/39 (28%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAI 62
           +  G   N  +   +  + +    +   ++       + 
Sbjct: 96  LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  129 bits (327), Expect = 1e-35
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G D+ +        L  AA   + + ++  ++ GA V+A       TPL+ AT  GHL+ 
Sbjct: 11  GSDLGKK-------LLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEI 62

Query: 87  VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY 146
           V +L+++GAD   +D+ G T +H AA  GH  I   L+  G +VN QD+ G TA   S  
Sbjct: 63  VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122

Query: 147 KVFSLDPTRLLI 158
              + D   +L 
Sbjct: 123 N-GNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 73.6 bits (182), Expect = 6e-16
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++ G DVN  D+   T LH AA    +EI +  +  GA V+A     + T    +   G+
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDISIGNGN 125

Query: 84  LDSVVLLIQH 93
            D   +L + 
Sbjct: 126 EDLAEILQKL 135

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  127 bits (320), Expect = 3e-34
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGG--DLQATPLHWATRQGHLDSVVLLIQHGAD 96
             +  AA+    E       +G          ++    L     +      + LI  GAD
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 97  PTLMDSEGSTCIHQAAQFGHTRIVA------YLVAKGINVNLQDRNGMTALMWSAYKVFS 150
                 EG+T      Q G   I          + KG ++    +     +  + +  F 
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 151 LDPTR------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
            +         +    G    I+DK  G  AL +    +  +A+  +  +
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  111 bits (280), Expect = 1e-28
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNR------IEIMKYFISQGAIVDAIGGDLQATPLHW 77
           +  G D+     E  TL                E+ K F+ +GA + A+        +  
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFK 120

Query: 78  ATRQGHLDSV-------VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV 130
                 +D         ++  Q G    + D  G T +    +      +  +       
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

Query: 131 NLQDRN 136
           NL++ +
Sbjct: 181 NLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 12  EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA 65
           E E+  ++     ++G  +   D   +T L +     +   +K         + 
Sbjct: 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 32/105 (30%)

Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ 167
           +  AA  G       L  KG      +    + +++                        
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDV---------------------- 45

Query: 168 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL 212
                   L        +     L++  + ++    +G T F  L
Sbjct: 46  --------LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  121 bits (306), Expect = 4e-33
 Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH AA N   E +K  +S+GA V+A   D   TPLH A + GH + V LL+  GAD  
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
               +G+T  H A + GH  IV  L AKG +VN +        
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  110 bits (277), Expect = 6e-29
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPLH A + GH + V  L+  GAD      +G+T +H AA+ GH  IV  L+AKG +VN 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
           + ++G T    +       +  +LL   GA    +     +   H
Sbjct: 71  RSKDGNTPEHLAKKNG-HHEIVKLLDAKGADVNARSW-GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 92.8 bits (232), Expect = 6e-23
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           +  G DVN    +  T LH AA N   EI+K  +++GA V+A   D   TP H A + GH
Sbjct: 29  LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGH 87

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQ 110
            + V LL   GAD        S   H 
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 94  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDP 153
           G        +G+T +H AA+ GH   V  L++KG +VN + ++G T L  +A      + 
Sbjct: 1   GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEI 57

Query: 154 TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTP 208
            +LL+  GA    + K  GN   H A     H  I   L +  + +   +      
Sbjct: 58  VKLLLAKGADVNARSK-DGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSSHH 111

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  121 bits (305), Expect = 3e-31
 Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 50/196 (25%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA----------- 72
                 +   +  T LH A     + ++   +  GA V A   G   +            
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149

Query: 73  TPLHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGHTRI---------- 119
            PL  A     L  V  L+Q+    AD +  DS G+T +H   +     +          
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 120 ------VAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGASTTIQDK 169
                  A L        + +R G+T L  +A      V        ++           
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL-----AYILQREI------- 257

Query: 170 IHGNVALHWAIYAKNH 185
            H     H A +  +H
Sbjct: 258 -HEPECRHAAAH-HHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  120 bits (303), Expect = 7e-31
 Identities = 43/240 (17%), Positives = 66/240 (27%), Gaps = 56/240 (23%)

Query: 26  AGQDVNEPDSETVTLLHWAAINNRIEIMK-------YFISQGAIVDAIGGDLQATPLHWA 78
                  P       +  A   +  + ++           +    +    +   T L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 79  T---RQGHLDSVVLLIQHGAD-----------PTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
                 G  D++ LL+                 T    +G T +H A +  +  +V  LV
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 125 AKGINVNLQDRN--------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQ 167
             G +V                    G   L  +A     L   + L+      A  + +
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-QLAIVKFLLQNSWQPADISAR 180

Query: 168 DKIHGNVALHWA-IYAKNHVAITTLV---------------SHTSSLEIPNAQGLTPFML 211
           D   GN  LH     A N V  T  V                     EI N +GLTP  L
Sbjct: 181 DS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 8/61 (13%)

Query: 25  EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
              +     + + +T L  AA + +I ++ Y + +                H A    H 
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP--------ECRHAAAHHHHH 272

Query: 85  D 85
            
Sbjct: 273 H 273

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  114 bits (287), Expect = 2e-30
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 44  AAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE 103
            + ++        + +G+ + +  G      L  A R G  D V +L+ +GAD    D  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
           GST +H AA+ GH  +V  L+  G +V  QD+ G TA   S   
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  101 bits (253), Expect = 7e-26
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           V  G  +          L  AA   + + ++  ++ GA V A   +   TPLH A R GH
Sbjct: 14  VPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGH 69

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
           L+ V LL++ GAD    D  G T    +   G+  +   L
Sbjct: 70  LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  118 bits (298), Expect = 2e-30
 Identities = 42/215 (19%), Positives = 59/215 (27%), Gaps = 50/215 (23%)

Query: 27  GQDVNEPDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIGGDLQA----------T 73
                   S   T L  A +N        +   +            + A          +
Sbjct: 33  TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS 92

Query: 74  PLHWATRQGHLDSVVLLIQHGAD-------------PTLMDSEGSTCIHQAAQFGHTRIV 120
            LH A  +  L  V LL+++GAD                    G   +  AA      +V
Sbjct: 93  ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 121 AYLVAKGI---NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALH 177
            YL+       ++   D  G T L                        I D    N AL 
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALV-------------------MIADNSPENSALV 193

Query: 178 WAIYAKNHVAIT-TLVSHTSSLEIPNAQGLTPFML 211
             +Y    + +   L       EI N QGLTP  L
Sbjct: 194 IHMY-DGLLQMGARLCPTVQLEEISNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  111 bits (280), Expect = 7e-28
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 40/172 (23%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA------------TP 74
                +   +  + LH A     ++ +K  +  GA V                      P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 75  LHWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQ----------------AAQFG 115
           L  A      D V  L+++    A     DS G+T +H                     G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYK----VFSLDPTRLLITFGAS 163
             ++ A L        + +  G+T L  +A +    +F     R ++    S
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF-----RHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 94.1 bits (234), Expect = 9e-22
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 33/140 (23%)

Query: 24  VEAGQDVNEPDSETVTL-------------LHWAAINNRIEIMKYFISQG---------- 60
           VE G DV+                      L  AA   + +++ Y +             
Sbjct: 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 61  ---------AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
                     ++ A       + L      G L     L        + + +G T +  A
Sbjct: 170 SLGNTVLHALVMIADNSPEN-SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228

Query: 112 AQFGHTRIVAYLVAKGINVN 131
           A+ G   I  +++ +  +  
Sbjct: 229 AKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 40/174 (22%)

Query: 73  TPLHWATRQGHLDSVVLLIQH--------GADPTLMDSEGSTCIHQAA---QFGHTRIVA 121
             L     +G  + +  L+++                S G TC+ +A    Q G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 122 YLVAKG-----------INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK- 169
            L+                   +   G +AL  +  K  SL   +LL+  GA   ++   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVHLRACG 122

Query: 170 -----------IHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPNAQ---GLTP 208
                        G + L  A        + T L+ +        A    G T 
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENPHQPASLEATDSLGNTV 175

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI 66
               Q     + + +T L  AA   +IEI ++ + +     A 
Sbjct: 208 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  106 bits (268), Expect = 5e-28
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH AA N  +E++K  +  GA V+A   + + TPLH A R GHL+ V LL++ GAD  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
             D  G T +H AA+ GH  +V  L+  G
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  101 bits (255), Expect = 3e-26
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
           TPLH A R GHL+ V LL++ GAD    D  G T +H AA+ GH  +V  L+  G +VN 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGA 162
           +D+NG T L  +A     L+  +LL+  GA
Sbjct: 64  KDKNGRTPLHLAARNG-HLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.2 bits (207), Expect = 9e-20
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
          +EAG DVN  D    T LH AA N  +E++K  +  GA V+A   + + TPLH A R GH
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGH 80

Query: 84 LDSVVLLIQHGA 95
          L+ V LL++ GA
Sbjct: 81 LEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.5 bits (187), Expect = 5e-17
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
           G T +H AA+ GH  +V  L+  G +VN +D+NG T L  +A     L+  +LL+  GA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAD 60

Query: 164 TTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
              +DK +G   LH A     H+ +   L+  
Sbjct: 61  VNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.2 bits (111), Expect = 9e-07
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 136 NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT-TLVSH 194
           NG T L  +A     L+  +LL+  GA    +DK +G   LH A     H+ +   L+  
Sbjct: 1   NGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAAR-NGHLEVVKLLLEA 57

Query: 195 TSSLEIPNAQGLTPFML 211
            + +   +  G TP  L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  112 bits (282), Expect = 1e-27
 Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 28/206 (13%)

Query: 26  AGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGA---IVDAIGGDLQATPLHWATRQ 81
              ++N P D    T LHW      +E++K+ +  G+     D +G     + L  A + 
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG----ESCLVKAVKS 174

Query: 82  GHLDSV----VLLIQHGADPTLMDSEGSTCIHQAAQFGHTR------------IVAYLVA 125
            +         LL        L DS   T +H                     ++ ++V 
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 126 KGINVNLQDRNGMTALMWSAYKVFSLDPTRLL---ITFGASTTIQDKIHGNVALHWAIYA 182
           K         N   +                L            QD  +G+  L+ A   
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARL 293

Query: 183 KNHVAITTLVSHTSSLEIPNAQGLTP 208
            N   +  L+ + +   I N  GL P
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  112 bits (280), Expect = 2e-27
 Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 19/204 (9%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLD 85
             + N     +       + ++ + E+   F +    ++    +   TPLHW T   +L+
Sbjct: 86  SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 145

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGH---TRIVAYLVAKGI-NVNLQDRNGMTAL 141
            V  L++HG++    D+ G +C+ +A +  +   +     L+      + L+D    T L
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

Query: 142 MWSAYKVFSLDPTR-----------LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITT 190
                       +             ++                  +     +    +  
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265

Query: 191 LVSHTSSLEIPNAQ---GLTPFML 211
           L        + NAQ   G T   +
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNI 289

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  101 bits (252), Expect = 1e-23
 Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 9/225 (4%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
             + NE   +    L         E+     +  +  ++ GG       H +      + 
Sbjct: 53  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112

Query: 87  VVLLIQHGADP-TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
                    +    +D  G+T +H      +  +V +LV  G N    D  G + L+ + 
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172

Query: 146 YKVFSLDP---TRLLITFGASTTIQDKIHGNVALHWAIYAKN----HVAITTLVSHTSSL 198
             V + D      LL        ++D       LH  I          A    +      
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231

Query: 199 EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNTQQNII 243
            +            E+            D I E  D      N++
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.0 bits (228), Expect = 1e-20
 Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 29/180 (16%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRI-------EIMKYFISQGAIVDAIGGDLQATPLH 76
           V+ G +    D+   + L  A  +           ++ Y      + D++      T LH
Sbjct: 151 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN----RTILH 206

Query: 77  WATR-----------QGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV 124
                          + +LD ++  +++    P    +                 +   +
Sbjct: 207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 266

Query: 125 AKGI----NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
                    +N QD NG T L  +A    ++     L+ +GA   I +K  G   + +  
Sbjct: 267 DLKWIIANMLNAQDSNGDTCLNIAARL-GNISIVDALLDYGADPFIANK-SGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.3 bits (169), Expect = 5e-13
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 15  LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNR----IEIMKYFISQGAIVDA--IGG 68
              + +G  V+      +  +             R    +E +        +++A    G
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 283

Query: 69  DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ 113
           D   T L+ A R G++  V  L+ +GADP + +  G   +   A 
Sbjct: 284 D---TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  108 bits (271), Expect = 9e-27
 Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 56/227 (24%)

Query: 39  TLLHWAAINNRIE----IMKYFISQGAIV---DAIGGDLQATPLHWA---TRQGHLDSVV 88
            +L         +    ++ + ++    +   +        T L  A      G  D++ 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 89  LLIQHGADPTLM-----------DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN- 136
           +L+        M              G T +H A +      V  LV KG +V+ Q R  
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 137 -------------GMTALMWSAYKVFSLDPTRLLITFG---ASTTIQDKIHGNVALHWAI 180
                        G   L  +A           L   G   A    QD   GN  LH  +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALV 184

Query: 181 YAKNHVAITT---------LVSH-------TSSLEIPNAQGLTPFML 211
              ++    T         L+         T+   + N  GL+P M+
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  102 bits (257), Expect = 8e-25
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 33/167 (19%)

Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQA-----------TPL 75
              +      T LH A        ++  + +GA V A   G   Q             PL
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 76  HWATRQGHLDSVVLLIQHG---ADPTLMDSEGSTCIHQAAQFGH---------TRIVAYL 123
             A        V  L ++G   AD    DS G+T +H                T++   L
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204

Query: 124 VAKGINVN-------LQDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
           + K   +        L + +G++ LM +A     +   + +I    +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKT-GKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 79.4 bits (196), Expect = 9e-17
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 34/141 (24%)

Query: 24  VEAGQDVNEPDSETV--------------TLLHWAAINNRIEIMKYFISQG---AIVDAI 66
           VE G DV+                       L  AA  N+  I+ Y    G   A +   
Sbjct: 113 VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172

Query: 67  GGDLQATPLHWATRQGH---------LDSVVLLIQHGAD-------PTLMDSEGSTCIHQ 110
                 T LH                     LL+   A          L++++G + +  
Sbjct: 173 DSRGN-TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

Query: 111 AAQFGHTRIVAYLVAKGINVN 131
           AA+ G   I  +++ + I   
Sbjct: 232 AAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 7/49 (14%)

Query: 24  VEAGQDVNEPDSETV-------TLLHWAAINNRIEIMKYFISQGAIVDA 65
           +     +    +          + L  AA   +I I ++ I +     A
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  103 bits (257), Expect = 5e-24
 Identities = 26/217 (11%), Positives = 52/217 (23%), Gaps = 27/217 (12%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA---TPLH 76
           +   + + + V    +E       AA N  + ++                +QA       
Sbjct: 111 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM--AMIQAENYHAFR 168

Query: 77  WATRQGHLDSVVLLIQHGADPTLMD--SEGSTCIHQAA-QFGHTRIVAYLVAKGINVNLQ 133
            A   GHL  +  L +           +E       AA   GH  ++ +L+   + +   
Sbjct: 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 228

Query: 134 DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH-----------GNVALHWAIYA 182
           + +             +    RL     A                    G   L   I  
Sbjct: 229 EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR 288

Query: 183 KNHVAITTL--------VSHTSSLEIPNAQGLTPFML 211
            + V +  +        +   +              L
Sbjct: 289 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 93.5 bits (232), Expect = 9e-21
 Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 14/177 (7%)

Query: 34  DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
           + E V  L      +     K   S           +             LD++ LL+  
Sbjct: 59  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCLLLTS 117

Query: 94  GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--RNGMTALMWSAYK---- 147
                ++ +E       AA+ GH  ++  L        +         A   +A      
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177

Query: 148 VFSLDPTRLLITFGASTTIQD-KIHGNVALHWAIYAKNHVAITT-LVSHTSSLEIPN 202
           V        L     +      +     A  WA   + H  +   L+     L    
Sbjct: 178 V-----LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 90.4 bits (224), Expect = 1e-19
 Identities = 28/214 (13%), Positives = 51/214 (23%), Gaps = 39/214 (18%)

Query: 24  VEAGQDVNEPDSET--VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHW-AT 79
            E          +         AA N  + ++                 +      W A 
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN-------- 131
            +GH + +  L+         +           ++G   +  ++      +         
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKYVNPFIARHVNRLKEMHDAFKL 260

Query: 132 ------------LQDRNGMTALMWSAYK--VFSLDPTRLLITF-----GASTTIQDKIHG 172
                        +   G   L     +     LD  R L++       A T        
Sbjct: 261 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG-DA 319

Query: 173 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL 206
           N  L  A+   N  A   L+S  S L +  A   
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSVLALTKANNY 353

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 5e-11
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
           ++A         +   LL  A            +S  +++       +A   +     G 
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT----KANNYYINETGGR 361

Query: 84  LDSVVLLIQHGA 95
           LD   + ++H  
Sbjct: 362 LDLRAVALEHHH 373

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 78.3 bits (192), Expect = 8e-16
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 40  LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA-TPLHWATRQGHLDSVVLLIQHGADPT 98
           L   +     +  M   ++ GA V+ + G     TPL  AT    L +   L+Q+GA+  
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
             DS G   +H A   GHT +    + +G ++  +D  G   L
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.5 bits (164), Expect = 3e-12
 Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 27  GQDVNEPDSETV--TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
           G DVN  +      T L  A   N +   ++ +  GA V+         PLH AT  GH 
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPLHHATILGHT 281

Query: 85  DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGINVNLQDRNGMTALMW 143
               L ++ GAD    DSEG   +  A +  +  IV  L  AK                 
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYL 341

Query: 144 SAYKVFSLDPT 154
             ++ FSL  +
Sbjct: 342 DIFRDFSLMAS 352

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 37/149 (24%)

Query: 69  DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDS--EGSTCIHQAAQFGHTRIVAYLVAK 126
              A     +     L ++   + HGAD   ++   + +T + QA          +L+  
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257

Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
           G NVN  D  G   L                                   H A    +  
Sbjct: 258 GANVNQADSAGRGPL-----------------------------------HHATILGHTG 282

Query: 187 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
                +   + L   +++G  P  +  E 
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMET 311

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.6 bits (175), Expect = 8e-14
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 42  HWAAINNR-IEIMKYFISQGA-----IVDAIGGDLQATPLHWATRQGHLDSVV---LLIQ 92
            W AI NR +  +    + G      +        +   LH A +  +  S+     +IQ
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 214

Query: 93  HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTAL 141
           +G       ++G+T +H AA +     +  L+     V   +  G TAL
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 22  KCVEAGQDVNEPDSETV------TLLHWA---AINNRIEIMKYFISQGAIVDAIGGDLQA 72
           +    GQD  +P            +LH A   A    + ++ + I  G  +DA   D   
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN- 227

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
           T LH+A      D + LL++  A    ++  G T +  A +  H      L
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.5 bits (128), Expect = 7e-08
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
           G  ++   ++  T LH+AA+ N+ + +K  +   A+V  +    + T L  A ++ H + 
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE-TALDIARKKHHKEC 274

Query: 87  VVLLIQHGADPTLMDSEGSTCIH 109
             LL Q  A         +  +H
Sbjct: 275 EELLEQAQAG------TFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 44/147 (29%)

Query: 78  ATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQFGHTR---IVAYLVAKGI 128
           A     L SV+    +G D           +     +H A +  +     +V +++  G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
           +++ +  +G TAL                                   H+A        +
Sbjct: 218 HLDAKAADGNTAL-----------------------------------HYAALYNQPDCL 242

Query: 189 TTLVSHTSSLEIPNAQGLTPFMLLEEN 215
             L+   + +   N  G T   +  + 
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKK 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 7/111 (6%)

Query: 73  TPLHWATRQG---HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
           T LH A R      L  V  L+Q+  +      +GST +H      +   +  L+    +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
           + + + +G T L  +           L              H +V   W +
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN----SHVHVEYEWRL 277

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 27  GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS 86
             ++++   +  T LH+  + +  E +K  +   A ++      + TPL  A R  H   
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHC 253

Query: 87  VVLLIQ 92
             LL Q
Sbjct: 254 EELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 44/149 (29%)

Query: 76  HWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFG---HTRIVAYLVAK 126
             A +   +  ++     G D T             T +H A +        IV +LV  
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 127 GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV 186
             N++ Q   G TAL                                   H+     N  
Sbjct: 195 SGNLDKQTGKGSTAL-----------------------------------HYCCLTDNAE 219

Query: 187 AITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
            +  L+   +S+EI N  G TP  + +  
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRL 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 29/157 (18%)

Query: 2   EHWRGVK-NW----YEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNR-IEIMKY 55
           E   G + ++    Y       F  +C    Q +            W AI NR +  +  
Sbjct: 106 ESDMGTRRDYIMAKYV---EHRFARRCTPEPQRL------------WTAICNRDLLSVLE 150

Query: 56  FISQGA-----IVDAIGGDLQATPLHWATRQGHLDSVV---LLIQHGADPTLMDSEGSTC 107
             + G      +        +   LH A +  +  S+     +IQ+G       ++G+T 
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210

Query: 108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
           +H AA +     +  L+     V   +  G TAL  +
Sbjct: 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 22/112 (19%)

Query: 27  GQDVNEPDSETV------TLLHWAAINNRIEIMKYFISQGAIVDAI---GGDLQA----- 72
           GQD  +P            +LH A        +        +VD I   GG L A     
Sbjct: 155 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASL-------PLVDFIIQNGGHLDAKAADG 207

Query: 73  -TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
            T LH+A      D + LL++  A    ++  G T +  A +  H      L
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 38/147 (25%)

Query: 75  LHWATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQFGHTRIVAYLVAKGI 128
           L  A     L SV+    +G D           +     +H A +  +            
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185

Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI 188
                                SL     +I  G     +    GN ALH+A        +
Sbjct: 186 ---------------------SLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCL 223

Query: 189 TTLVSHTSSLEIPNAQGLTPFMLLEEN 215
             L+   + +   N  G T   +  + 
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKK 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	584
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2etb_A	256	Transient receptor potential cation channel subfam	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-36  Score=298.64  Aligned_cols=210  Identities=22%  Similarity=0.259  Sum_probs=184.2

Q ss_pred             hhhHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9492          14 ELTKVFVGKCVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ   92 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~~-d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~   92 (584)
                      ....++++.|+++|++++.. |..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++
T Consensus        33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~  111 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIR  111 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH
Confidence            34678899999999999764 899999999999999999999999999999987655 9999999999999999999999


Q ss_pred             CCC-CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCC
Q psy9492          93 HGA-DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH  171 (584)
Q Consensus        93 ~ga-d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~  171 (584)
                      +|+ +++.+|..|.||||.|++.|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++.+|. .
T Consensus       112 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~  189 (253)
T 1yyh_A          112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKDMQNN-R  189 (253)
T ss_dssp             STTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-T
T ss_pred             cCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-C
Confidence            997 99999999999999999999999999999999999999999999999999998 89999999999999999998 9


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         172 GNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       172 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      |.||||+|+..|+.+++++|+++|+|++.+|..|+||+++|+++++.+     +++.|..
T Consensus       190 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~-----i~~~l~~  244 (253)
T 1yyh_A          190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD-----IVRLLDL  244 (253)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH-----HHHHHHC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHH-----HHHHHHH
Confidence            999999999999999999999999999999999999999999999999     8888865

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.5e-36  Score=288.63  Aligned_cols=210  Identities=22%  Similarity=0.264  Sum_probs=197.8

Q ss_pred             HHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9492          17 KVFVGKCVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA   95 (584)
Q Consensus        17 ~~~l~~ll~~g~d~n~~-d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga   95 (584)
                      .++++.|+++|.+++.. |.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++++
T Consensus         4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~   82 (223)
T 2f8y_A            4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIRNRA   82 (223)
T ss_dssp             -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred             HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34567788999999876 899999999999999999999999999999987655 9999999999999999999999987


Q ss_pred             -CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCc
Q psy9492          96 -DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  174 (584)
Q Consensus        96 -d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  174 (584)
                       +++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..|. .|.|
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t  160 (223)
T 2f8y_A           83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKDMQNN-REET  160 (223)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCC
T ss_pred             CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCcC
Confidence             89999999999999999999999999999999999999999999999999988 89999999999999999998 9999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      |||+|+..|+.+++++|+++|+|++.+|..|.||+++|++.++.+     +++.|.+.+.
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----i~~~L~~~g~  215 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD-----IVRLLDEYNL  215 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH-----HHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchH-----HHHHHHHcCC
Confidence            999999999999999999999999999999999999999999998     8998877443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1e-35  Score=287.76  Aligned_cols=218  Identities=25%  Similarity=0.307  Sum_probs=202.1

Q ss_pred             cchhhhhhhHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHH
Q psy9492           8 KNWYEFELTKVFVGKCVEAG-QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS   86 (584)
Q Consensus         8 ~~~~~~~~~~~~l~~ll~~g-~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~   86 (584)
                      ..........+.++.+++.+ .+++..|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++
T Consensus        10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~   88 (231)
T 3aji_A           10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDEI   88 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCC-CCCHHHHHHHcCHHHH
Confidence            34445566778888888865 557888999999999999999999999999999999987655 9999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCccc
Q psy9492          87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI  166 (584)
Q Consensus        87 v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~  166 (584)
                      +++|+++|++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++.
T Consensus        89 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~  167 (231)
T 3aji_A           89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG-NLKMVHILLFYKASTNI  167 (231)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999998 89999999999999999


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHH
Q psy9492         167 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELK  233 (584)
Q Consensus       167 ~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~  233 (584)
                      +|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||+++|.+.++.+     +++.|.+.+
T Consensus       168 ~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----i~~lL~~~~  228 (231)
T 3aji_A          168 QDT-EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI-----LKRLAEGEE  228 (231)
T ss_dssp             CCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHH-----HHHHHHHHH
T ss_pred             cCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHH-----HHHHHcccc
Confidence            998 9999999999999999999999999999999999999999999888777     777776644

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.4e-35  Score=286.29  Aligned_cols=208  Identities=26%  Similarity=0.373  Sum_probs=196.5

Q ss_pred             chhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHH
Q psy9492           9 NWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV   88 (584)
Q Consensus         9 ~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~   88 (584)
                      +.+......++++.|+++|++++..|.+|.||||.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++++
T Consensus        16 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~   94 (237)
T 3b7b_A           16 HAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE-GSTCLHLAAKKGHYEVVQ   94 (237)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTT-SCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHH
Confidence            3444556788999999999999999999999999999999999999999999999877655 999999999999999999


Q ss_pred             HHHHCC-CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccc
Q psy9492          89 LLIQHG-ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ  167 (584)
Q Consensus        89 ~Ll~~g-ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~  167 (584)
                      +|+++| ++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..
T Consensus        95 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~  173 (237)
T 3b7b_A           95 YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG-CVDIAEILLAAKCDLHAV  173 (237)
T ss_dssp             HHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC-CHHHHHHHHTTTCCTTCC
T ss_pred             HHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC-CHHHHHHHHHcCCCCCCc
Confidence            999998 899999999999999999999999999999999999999999999999999998 899999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCc
Q psy9492         168 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       168 d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~  219 (584)
                      |. .|.||||+|+..|+.+++++|+++|+|++.+|.+|.||+++|+.+++..
T Consensus       174 ~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          174 NI-HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             CT-TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHH
T ss_pred             CC-CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHH
Confidence            98 9999999999999999999999999999999999999999999988664

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.4e-35  Score=282.61  Aligned_cols=219  Identities=52%  Similarity=0.866  Sum_probs=206.8

Q ss_pred             hhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492          11 YEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL   90 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   90 (584)
                      +......++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|
T Consensus        16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L   95 (240)
T 3eu9_A           16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL   95 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence            34555789999999999999999999999999999999999999999999999887777799999999999999999999


Q ss_pred             HHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCC
Q psy9492          91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI  170 (584)
Q Consensus        91 l~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~  170 (584)
                      +++|++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+.++...+++++|++.|++++..+..
T Consensus        96 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~  175 (240)
T 3eu9_A           96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY  175 (240)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc
Confidence            99999999999999999999999999999999999999999999999999999998886789999999999999999866


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       171 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      .|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|++.++.+     +++.|.+...
T Consensus       176 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~v~~L~~~~~  234 (240)
T 3eu9_A          176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVW-----MINHLQEARQ  234 (240)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHH-----HHHHHHHHC-
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH-----HHHHHHHhhh
Confidence            8999999999999999999999999999999999999999999999999     9998877443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-35  Score=287.14  Aligned_cols=211  Identities=22%  Similarity=0.257  Sum_probs=191.7

Q ss_pred             hhhhHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHH
Q psy9492          13 FELTKVFVGKCVE----AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV   88 (584)
Q Consensus        13 ~~~~~~~l~~ll~----~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~   88 (584)
                      .....++++.|++    .|.+++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++++
T Consensus        18 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~   96 (241)
T 1k1a_A           18 VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH-GQTAAHLACEHRSPTCLR   96 (241)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC-CCCHHHHHHHcCCHHHHH
Confidence            3445566666665    89999999999999999999999999999999999999887654 999999999999999999


Q ss_pred             HHHHCCC----CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHhhcCChhhHHHHHhcCCC
Q psy9492          89 LLIQHGA----DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGAS  163 (584)
Q Consensus        89 ~Ll~~ga----d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~  163 (584)
                      .|+++|+    +++.+|..|.||||.|+..|+.+++++|+++|++++..| ..|.||||+|+..| +.+++++|++.|++
T Consensus        97 ~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A           97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGAN  175 (241)
T ss_dssp             HHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCC
T ss_pred             HHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC-CHHHHHHHHHcCCC
Confidence            9999987    888999999999999999999999999999999999999 78999999999988 89999999999999


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         164 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       164 ~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      ++..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||+++|++.++.+     +++.|.+
T Consensus       176 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~-----i~~~l~~  237 (241)
T 1k1a_A          176 VNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID-----ILRGKAT  237 (241)
T ss_dssp             TTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH-----HHTC---
T ss_pred             CCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHH-----HHhhhcc
Confidence            999998 9999999999999999999999999999999999999999999988776     5555543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.5e-35  Score=287.86  Aligned_cols=201  Identities=24%  Similarity=0.281  Sum_probs=155.6

Q ss_pred             CCCCCCCCCCCcHHHHHHHcC-------------CHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9492          28 QDVNEPDSETVTLLHWAAINN-------------RIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG   94 (584)
Q Consensus        28 ~d~n~~d~~g~t~Lh~A~~~~-------------~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g   94 (584)
                      .|+|.+|.+|.||||+|+..|             +.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            478999999999999999977             8999999999999998776677999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCC
Q psy9492          95 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI-NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN  173 (584)
Q Consensus        95 ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~  173 (584)
                      ++++.+|..|.||||.|+..|+.+++++|+++|. +++.+|..|.||||+|+..+ +.+++++|++.|++++..|. .|+
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~d~-~g~  158 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDD-LGK  158 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT-CSSHHHHHHHTTCCTTCBCT-TSC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcC-hHHHHHHHHHcCCCCCCcCC-CCC
Confidence            9999999999999999999999999999999987 89999999999999999998 89999999999999999998 999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         174 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       174 TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      ||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+..++.+     +++.|.+.+..
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~-----~v~~Ll~~ga~  215 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE-----TAKVLLDHFAN  215 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHHHHTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHH-----HHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999998     99999875443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.8e-35  Score=290.75  Aligned_cols=210  Identities=25%  Similarity=0.291  Sum_probs=184.1

Q ss_pred             hhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492          11 YEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL   90 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   90 (584)
                      +......++++.|++.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|
T Consensus        66 Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~t~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A           66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTT-CCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCHHHHHHHH
Confidence            34455678899999999999999999999999999999999999999999998877655 89999999999999999999


Q ss_pred             HHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCC
Q psy9492          91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI  170 (584)
Q Consensus        91 l~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~  170 (584)
                      +++|++++..+ .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++. |. 
T Consensus       145 l~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~-~~-  220 (285)
T 3d9h_A          145 LQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ-QRACVKKLLESGADVNQ-GK-  220 (285)
T ss_dssp             HHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTT-CHHHHHHHHHTTCCTTC-CB-
T ss_pred             HHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHHCCCCCCC-CC-
Confidence            99999887644 4899999999999999999999999999999999999999999888 78999999999999984 65 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       171 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                      .|+||||+|+..|+.+++++|+++|+|++.+|.+|+||+++|..  +.+     +++.|.+.
T Consensus       221 ~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~-----~~~~Ll~~  275 (285)
T 3d9h_A          221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESP-----LAQLFLER  275 (285)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSH-----HHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccH-----HHHHHHHh
Confidence            89999999999999999999999999999999999999999983  344     67777663

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=292.23  Aligned_cols=201  Identities=25%  Similarity=0.317  Sum_probs=162.5

Q ss_pred             hhhhHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCcccccCCCCCCcHHHHHHHcCC
Q psy9492          13 FELTKVFVGKCVEAGQD--------VNEPDSETVTLLHWAAINNRI-EIMKYFISQGAIVDAIGGDLQATPLHWATRQGH   83 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d--------~n~~d~~g~t~Lh~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~   83 (584)
                      .....++++.|++.|.+        ++..|..|.||||.|+..++. ++++.|++.|+++|..+.. |.||||+|+..|+
T Consensus        20 ~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~-G~TpLh~A~~~g~   98 (269)
T 4b93_B           20 ADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD-GSSPLHVAALHGR   98 (269)
T ss_dssp             HTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT-SCCHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHcCc
Confidence            44567899999998875        566788999999999988765 4889999999999987765 9999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCC
Q psy9492          84 LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS  163 (584)
Q Consensus        84 ~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~  163 (584)
                      .+++++|++.|++++.++..|.||+|.|+..++.+++++|++.|++++.+|..|.||||+|+..| +.+++++|++.|++
T Consensus        99 ~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g-~~~~v~~Ll~~gad  177 (269)
T 4b93_B           99 ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG-HHELVALLLQHGAS  177 (269)
T ss_dssp             TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT-CGGGHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998 89999999999999


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         164 TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       164 ~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      +|.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+|||++|++++
T Consensus       178 vn~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          178 INASNN-KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCcccc-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            999998 9999999999999999999999999999999999999999998755

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-34  Score=284.56  Aligned_cols=201  Identities=28%  Similarity=0.368  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9492          16 TKVFVGKCVEAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG   94 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~-d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g   94 (584)
                      ..++++.|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|
T Consensus        17 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g   95 (285)
T 1wdy_A           17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-GATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344555555555555544 444555555555555555555555555555544332 555555555555555555555555


Q ss_pred             CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHHhhcCChhhHHHHHhc-CCC
Q psy9492          95 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ----------DRNGMTALMWSAYKVFSLDPTRLLITF-GAS  163 (584)
Q Consensus        95 ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~-ga~  163 (584)
                      ++++.+|..|.||||.|+..|+.+++++|+++|++++..          +..|.||||+|+..| +.+++++|++. |++
T Consensus        96 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~  174 (285)
T 1wdy_A           96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG-HVEVLKILLDEMGAD  174 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT-CHHHHHHHHHTSCCC
T ss_pred             CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC-CHHHHHHHHHhcCCC
Confidence            555555555555555555555555555555555554444          444555555555444 44555555544 555


Q ss_pred             cccccCCCCCcHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCc
Q psy9492         164 TTIQDKIHGNVALHWAIYAKN----HVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       164 ~~~~d~~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~  219 (584)
                      ++..|. .|+||||+|+..++    .+++++|+++|+|++.+|..|.|||++|++.++.+
T Consensus       175 ~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          175 VNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             TTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCccCC-CCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            555444 45555555555544    44555555555555555555555555555554444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.4e-35  Score=291.12  Aligned_cols=200  Identities=21%  Similarity=0.193  Sum_probs=116.2

Q ss_pred             hhhHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492          14 ELTKVFVGKCVEAGQD---VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL   90 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d---~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   90 (584)
                      ....++++.|++.|++   +|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|
T Consensus        19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~L   97 (282)
T 1oy3_D           19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVL   97 (282)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCcchhHhh
Confidence            3345566666666655   5566666666666666666666666666666666654433 66666666666666666666


Q ss_pred             HHCCCC-----------------------------------------------CCCCCCCCChHHHHHHHhCCHHHHHHH
Q psy9492          91 IQHGAD-----------------------------------------------PTLMDSEGSTCIHQAAQFGHTRIVAYL  123 (584)
Q Consensus        91 l~~gad-----------------------------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~L  123 (584)
                      +++|++                                               ++.+|..|.||||.|++.|+.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  177 (282)
T 1oy3_D           98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (282)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            665543                                               445555666666666666666666666


Q ss_pred             HHCCCCCCCCCCC-CCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q psy9492         124 VAKGINVNLQDRN-GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN  202 (584)
Q Consensus       124 l~~g~~~~~~d~~-g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n  202 (584)
                      +++|++++..+.. |.||||+|+..| +.+++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus       178 l~~g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  255 (282)
T 1oy3_D          178 RDAGADLNKPEPTCGRTPLHLAVEAQ-AASVLELLLKAGADPTARMY-GGRTPLGSALLRPNPILARLLRAHGAPEPEDG  255 (282)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC
T ss_pred             HHcCCCCCCCCCCCCcCHHHHHHHcC-CHHHHHHHHHcCCCCccccc-CCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCC
Confidence            6666666666543 666666666655 56666666666666666665 66666666666666666666666666666666


Q ss_pred             CCCCCHHHHHHhcC
Q psy9492         203 AQGLTPFMLLEENI  216 (584)
Q Consensus       203 ~~g~tpl~lA~~~~  216 (584)
                      ..|.||++.|....
T Consensus       256 ~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          256 GDKLSPCSSSGSDS  269 (282)
T ss_dssp             --------------
T ss_pred             CcccccccccCCcc
Confidence            66666666665543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1e-34  Score=289.12  Aligned_cols=201  Identities=19%  Similarity=0.192  Sum_probs=186.3

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCc---ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy9492          30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAI---VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  106 (584)
Q Consensus        30 ~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  106 (584)
                      ++.+|.+|.||||+|+..|+.+++++|+++|++   ++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            477899999999999999999999999999888   665554 4999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCC-----------------------------------------------CCCCCCCCCc
Q psy9492         107 CIHQAAQFGHTRIVAYLVAKGIN-----------------------------------------------VNLQDRNGMT  139 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~g~~-----------------------------------------------~~~~d~~g~t  139 (584)
                      |||+|++.|+.+++++|+++|++                                               ++.+|..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            99999999999999999998755                                               6778899999


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCc
Q psy9492         140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       140 ~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~  219 (584)
                      |||+|+..| +.+++++|++.|++++..+...|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..++.+
T Consensus       161 ~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          161 PLHVAVIHK-DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             HHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH
Confidence            999999998 8999999999999999998745999999999999999999999999999999999999999999999998


Q ss_pred             cchHHHHHHHHHHHhccc
Q psy9492         220 WLGKATVDKITELKDHYN  237 (584)
Q Consensus       220 ~l~~~~~~~l~~~~~~~~  237 (584)
                           +++.|.+.+....
T Consensus       240 -----~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          240 -----LARLLRAHGAPEP  252 (282)
T ss_dssp             -----HHHHHHHTTCCCC
T ss_pred             -----HHHHHHHcCCCcC
Confidence                 9999987555443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.6e-34  Score=278.65  Aligned_cols=203  Identities=23%  Similarity=0.274  Sum_probs=188.4

Q ss_pred             hhhhhhHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCC--CcccccCCCCCCcHHHHHHHcCCHHHH
Q psy9492          11 YEFELTKVFVGKCVEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQG--AIVDAIGGDLQATPLHWATRQGHLDSV   87 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~tpLh~A~~~g~~~~v   87 (584)
                      .......++++.|++.|.+++. .|.+|.||||+|+..|+.+++++|+++|  .+++...+..|.||||+|+..|+.+++
T Consensus         9 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~   88 (228)
T 2dzn_A            9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV   88 (228)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHH
Confidence            3445578899999999887655 8999999999999999999999999999  566653445699999999999999999


Q ss_pred             HHHHHCC--CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcC-CCc
Q psy9492          88 VLLIQHG--ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-AST  164 (584)
Q Consensus        88 ~~Ll~~g--ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g-a~~  164 (584)
                      ++|+++|  ++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.| +++
T Consensus        89 ~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~  167 (228)
T 2dzn_A           89 KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKSAV  167 (228)
T ss_dssp             HHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHTTTCCCS
T ss_pred             HHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcC-CHHHHHHHHhcCcccc
Confidence            9999999  899999999999999999999999999999999999999999999999999988 899999999999 999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHhc
Q psy9492         165 TIQDKIHGNVALHWAIYAKNHVAITTLV-SHTSSLEIPNAQGLTPFMLLEEN  215 (584)
Q Consensus       165 ~~~d~~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~n~~g~tpl~lA~~~  215 (584)
                      +..|. .|+||||+|+..|+.+++++|+ ++|+|++.+|.+|+||+++|.+.
T Consensus       168 ~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          168 NWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             CCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             cCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            99998 9999999999999999999999 89999999999999999999764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.8e-34  Score=299.08  Aligned_cols=214  Identities=21%  Similarity=0.239  Sum_probs=200.8

Q ss_pred             hhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy9492          10 WYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL   89 (584)
Q Consensus        10 ~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~   89 (584)
                      +.......++++.|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.   ..|.||||+|+..|+.+++++
T Consensus        26 ~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~~~g~~~~v~~  102 (364)
T 3ljn_A           26 VAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANKTDLVVA  102 (364)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHHHcCCHHHHHH
Confidence            34455678899999999999999999999999999999999999999999997664   348899999999999999999


Q ss_pred             HHHC----CCCCCC-----------------CCCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHh
Q psy9492          90 LIQH----GADPTL-----------------MDSEGSTCIHQAAQFG--HTRIVAYLVAKGINVNLQDRNGMTALMWSAY  146 (584)
Q Consensus        90 Ll~~----gad~~~-----------------~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~  146 (584)
                      |+++    |++++.                 +|..|.||||.|+..|  +.+++++|+++|++++.+|..|.||||+|+.
T Consensus       103 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  182 (364)
T 3ljn_A          103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAME  182 (364)
T ss_dssp             HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            9999    888776                 8889999999999999  9999999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccc
Q psy9492         147 KVFSLDPTRLLITFGAS-----TTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL  221 (584)
Q Consensus       147 ~~~~~~~~~~Ll~~ga~-----~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l  221 (584)
                      .| +.+++++|++.|++     +|..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..++.+  
T Consensus       183 ~g-~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~--  258 (364)
T 3ljn_A          183 FR-NREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL--  258 (364)
T ss_dssp             TT-CHHHHHHHHHHCSCSSSCCTTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHH--
T ss_pred             cC-CHHHHHHHHhcccccccccccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHH--
Confidence            98 89999999999999     999998 9999999999999999999999999999999999999999999999999  


Q ss_pred             hHHHHHHHHHHH
Q psy9492         222 GKATVDKITELK  233 (584)
Q Consensus       222 ~~~~~~~l~~~~  233 (584)
                         +++.|.+..
T Consensus       259 ---~v~~Ll~~~  267 (364)
T 3ljn_A          259 ---LTKELLQKT  267 (364)
T ss_dssp             ---HHHHHHHHS
T ss_pred             ---HHHHHHHcC
Confidence               999988743

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-33  Score=278.51  Aligned_cols=221  Identities=22%  Similarity=0.250  Sum_probs=205.7

Q ss_pred             hhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy9492          10 WYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL   89 (584)
Q Consensus        10 ~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~   89 (584)
                      .+......++++.|+++|++++..|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++
T Consensus        45 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A           45 NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFMEAAVYGKVKALKF  123 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT-CCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcc-cCCHHHHHHHhCCHHHHHH
Confidence            334455789999999999999999999999999999999999999999999999987655 9999999999999999999


Q ss_pred             HHHCCCCCCCC----------CCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHhhcCC---hhhHH
Q psy9492          90 LIQHGADPTLM----------DSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFS---LDPTR  155 (584)
Q Consensus        90 Ll~~gad~~~~----------d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~Aa~~~~~---~~~~~  155 (584)
                      |+++|++++.+          +..|.||||.|+..|+.+++++|+++ |++++..|..|.||||+|+..+..   .++++
T Consensus       124 Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~  203 (285)
T 1wdy_A          124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH  203 (285)
T ss_dssp             HHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHH
T ss_pred             HHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHH
Confidence            99999999987          78899999999999999999999998 999999999999999999988832   78999


Q ss_pred             HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         156 LLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       156 ~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      +|++.|++++..|. .|+||||+|+..|+.+++++|++ .|+|++.+|..|+||+++|++.++.+     +++.|.+.+.
T Consensus       204 ~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~-----i~~~Ll~~Ga  277 (285)
T 1wdy_A          204 LLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK-----IAELLCKRGA  277 (285)
T ss_dssp             HHHHTTCCSSCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHHHSS
T ss_pred             HHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH-----HHHHHHHcCC
Confidence            99999999999998 99999999999999999999999 89999999999999999999999998     9999988655


Q ss_pred             ccc
Q psy9492         235 HYN  237 (584)
Q Consensus       235 ~~~  237 (584)
                      ..+
T Consensus       278 ~~~  280 (285)
T 1wdy_A          278 STD  280 (285)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.7e-33  Score=273.22  Aligned_cols=199  Identities=30%  Similarity=0.475  Sum_probs=189.9

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q psy9492          28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTC  107 (584)
Q Consensus        28 ~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~  107 (584)
                      .|++.+|.+|.||||.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCC-CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence            578899999999999999999999999999999999987655 9999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q psy9492         108 IHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV  186 (584)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~  186 (584)
                      ||.|+..|+.+++++|+++| .+++..|..|.||||+|+..+ +.+++++|++.|++++..|. .|.||||+|+..|+.+
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~  158 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK-HVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVD  158 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHCCHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHCCCHH
Confidence            99999999999999999998 899999999999999999988 89999999999999999998 9999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         187 AITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       187 ~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      ++++|+++|+|++.+|..|.||+++|++.++.+     +++.|.+.+.
T Consensus       159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-----~v~~Ll~~ga  201 (237)
T 3b7b_A          159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYD-----CVVLFLSRDS  201 (237)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH-----HHHHHHTTTC
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh-----HHHHHHHcCC
Confidence            999999999999999999999999999999988     8888876443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.6e-34  Score=296.49  Aligned_cols=206  Identities=23%  Similarity=0.291  Sum_probs=193.8

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC---
Q psy9492          18 VFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG---   94 (584)
Q Consensus        18 ~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g---   94 (584)
                      ..++.|++.|+|+|.+|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|   
T Consensus       147 ~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~  225 (373)
T 2fo1_E          147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTKLK  225 (373)
T ss_dssp             HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             HHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCC-CCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence            3455667999999999999999999999999999999999999999987654 999999999999999999999998   


Q ss_pred             CCCCCCCCCCChHHHHHHHhC---CHHHHHHHHHCCCCCCC--------CCCCCCcHHHHHHhhcCChhhHHHHHhcC-C
Q psy9492          95 ADPTLMDSEGSTCIHQAAQFG---HTRIVAYLVAKGINVNL--------QDRNGMTALMWSAYKVFSLDPTRLLITFG-A  162 (584)
Q Consensus        95 ad~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g-a  162 (584)
                      ++++.+|..|.||||+|+..+   +.+++++|+++|++++.        .|..|.||||+|+..| +.+++++|++.| +
T Consensus       226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~  304 (373)
T 2fo1_E          226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS-NMPIVKYLVGEKGS  304 (373)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC-CHHHHHHHHHHSCC
T ss_pred             cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhC-CHHHHHHHHHhcCC
Confidence            899999999999999999998   89999999999999886        6779999999999988 899999999886 9


Q ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         163 STTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       163 ~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +++.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+.+++.+     +++.|.+
T Consensus       305 ~~n~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~-----iv~~Ll~  367 (373)
T 2fo1_E          305 NKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN-----IVDIFDR  367 (373)
T ss_dssp             CTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHH-----HHHHHHT
T ss_pred             CccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            9999998 9999999999999999999999999999999999999999999999998     8888876

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-34  Score=291.43  Aligned_cols=201  Identities=27%  Similarity=0.334  Sum_probs=185.8

Q ss_pred             hhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          12 EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        12 ~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      ......++++.|+++|+++|..|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+
T Consensus        48 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll  126 (299)
T 1s70_B           48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLI  126 (299)
T ss_dssp             HHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHH
Confidence            3455788999999999999999999999999999999999999999999999987665 999999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-CCCC--------------------------CCCCCCCCcHHHHH
Q psy9492          92 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINV--------------------------NLQDRNGMTALMWS  144 (584)
Q Consensus        92 ~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~--------------------------~~~d~~g~t~Lh~A  144 (584)
                      ++|++++.+|..|.||||+|+..++.++++.++.. |.++                          ...+..|.||||+|
T Consensus       127 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A  206 (299)
T 1s70_B          127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA  206 (299)
T ss_dssp             HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHH
T ss_pred             hCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHH
Confidence            99999999999999999999999999998877754 4443                          23567899999999


Q ss_pred             HhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Q psy9492         145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN  215 (584)
Q Consensus       145 a~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~  215 (584)
                      +..| +.+++++|++.|+++|..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||+++|.+.
T Consensus       207 ~~~g-~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          207 AAKG-YTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHHT-CHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HHCC-cHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            9998 89999999999999999998 999999999999999999999999999999999999999999653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.2e-33  Score=288.37  Aligned_cols=216  Identities=23%  Similarity=0.233  Sum_probs=196.3

Q ss_pred             hhhhHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          13 FELTKVFVGKCVE-AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        13 ~~~~~~~l~~ll~-~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      .....+.++.+++ .|.+++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+
T Consensus        33 ~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~iv~~Ll  111 (351)
T 3utm_A           33 RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG-GLVPLHNACSYGHYEVTELLL  111 (351)
T ss_dssp             HHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHCCCHHHHHHHH
Confidence            3445666777766 49999999999999999999999999999999999999987655 999999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-------------------------------------
Q psy9492          92 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-------------------------------------  134 (584)
Q Consensus        92 ~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-------------------------------------  134 (584)
                      ++|++++.+|..|.||||.|+..|+.+++++|+++|++++..|                                     
T Consensus       112 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (351)
T 3utm_A          112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL  191 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccH
Confidence            9999999999999999999999999999999999999987655                                     


Q ss_pred             -----------------CCCCcHHHHHHhhcC--ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         135 -----------------RNGMTALMWSAYKVF--SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       135 -----------------~~g~t~Lh~Aa~~~~--~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                                       ..|.||||+|+..+.  ..+++++|++.|+++|..|. .|+||||+|+..|+.+++++|+++|
T Consensus       192 ~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g  270 (351)
T 3utm_A          192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHG  270 (351)
T ss_dssp             HHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                             456788888887742  47899999999999999998 9999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         196 SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       196 ad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      +|++.+|..|.|||++|+..++.+     +++.|.+.+..
T Consensus       271 a~~n~~d~~g~t~L~~A~~~~~~~-----~v~~Ll~~gad  305 (351)
T 3utm_A          271 AKMNALDSLGQTALHRAALAGHLQ-----TCRLLLSYGSD  305 (351)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHH-----HHHHHHHTTCC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHH-----HHHHHHHcCCC
Confidence            999999999999999999999998     99999875544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-33  Score=297.83  Aligned_cols=202  Identities=25%  Similarity=0.311  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy9492          15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG   94 (584)
Q Consensus        15 ~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g   94 (584)
                      ...++++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++++.|+++|
T Consensus       157 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g  235 (437)
T 1n11_A          157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYG  235 (437)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3445555555555555555555555555555555555555555555555443322 455555555555555555555555


Q ss_pred             CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCc
Q psy9492          95 ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  174 (584)
Q Consensus        95 ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  174 (584)
                      ++++.++..|.||||.|++.|+.+++++|+++|++++..|..|.||||+|+..| +.+++++|++.|++++..|. .|+|
T Consensus       236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t  313 (437)
T 1n11_A          236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG-HVPVADVLIKHGVMVDATTR-MGYT  313 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHHTCCTTCCCS-SCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCccCCCCCC-CCCC
Confidence            555555555555555555555555555555555555555555555555555444 44455555555555554444 4555


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCc
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~  219 (584)
                      |||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..++.+
T Consensus       314 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~  358 (437)
T 1n11_A          314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD  358 (437)
T ss_dssp             HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHH
Confidence            555555555555555555555555555555555555555544444

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.3e-33  Score=271.48  Aligned_cols=193  Identities=28%  Similarity=0.328  Sum_probs=179.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCChHHH
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP-----TLMDSEGSTCIH  109 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-----~~~d~~g~t~L~  109 (584)
                      .|.||||+|+..|+.++++.|++. |++++..+.. |.||||+|+..|+.+++++|+++|+++     +.+|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 9999987655 999999999999999999999999887     777889999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHH
Q psy9492         110 QAAQFGHTRIVAYLVAKGINVNLQDR-------------NGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVAL  176 (584)
Q Consensus       110 ~A~~~g~~~~v~~Ll~~g~~~~~~d~-------------~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpL  176 (584)
                      .|+..|+.+++++|+++|++++.++.             .|.||||+|+..| +.+++++|++.|++++.+|. .|+|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG-SEEIVRLLIEHGADIRAQDS-LGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHH
Confidence            99999999999999999999998876             7999999999998 89999999999999999998 999999


Q ss_pred             HHHHHcCCHHHH----HHHHhcCCCC------CCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhcc
Q psy9492         177 HWAIYAKNHVAI----TTLVSHTSSL------EIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHY  236 (584)
Q Consensus       177 h~A~~~g~~~~v----~~Ll~~gad~------~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~  236 (584)
                      |+|+..|+.+++    ++|+++|+++      +.+|..|.||+++|++.++.+     +++.|.+.....
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~-----~v~~Ll~~g~~~  223 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV-----MFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH-----HHHHHHHHHHHC
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHH-----HHHHHHhcCccc
Confidence            999999999988    9999999998      589999999999999999999     999998855544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.7e-33  Score=285.87  Aligned_cols=211  Identities=29%  Similarity=0.331  Sum_probs=193.2

Q ss_pred             chhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHH
Q psy9492           9 NWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV   88 (584)
Q Consensus         9 ~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~   88 (584)
                      +.+......++++.|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++++
T Consensus        63 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~  141 (351)
T 3utm_A           63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW-QFTPLHEAASKNRVEVCS  141 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHH
Confidence            3444556789999999999999999999999999999999999999999999999987655 999999999999999999


Q ss_pred             HHHHCCCCCCCCC------------------------------------------------------CCCChHHHHHHHh
Q psy9492          89 LLIQHGADPTLMD------------------------------------------------------SEGSTCIHQAAQF  114 (584)
Q Consensus        89 ~Ll~~gad~~~~d------------------------------------------------------~~g~t~L~~A~~~  114 (584)
                      +|+++|++++..+                                                      ..|.||||.|+..
T Consensus       142 ~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~  221 (351)
T 3utm_A          142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS  221 (351)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHC
T ss_pred             HHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHH
Confidence            9999999988655                                                      4567899999998


Q ss_pred             ---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492         115 ---GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  191 (584)
Q Consensus       115 ---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~L  191 (584)
                         ++.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|+++|.+|. .|+||||+|+..|+.+++++|
T Consensus       222 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~n~~d~-~g~t~L~~A~~~~~~~~v~~L  299 (351)
T 3utm_A          222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA-HNDVMEVLHKHGAKMNALDS-LGQTALHRAALAGHLQTCRLL  299 (351)
T ss_dssp             CSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHH
T ss_pred             hCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHH
Confidence               5589999999999999999999999999999998 89999999999999999998 999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         192 VSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       192 l~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +++|+|++.+|..|.||+++|.+    +     +++.|.+
T Consensus       300 l~~gad~~~~~~~g~tal~~a~~----~-----~~~~l~~  330 (351)
T 3utm_A          300 LSYGSDPSIISLQGFTAAQMGNE----A-----VQQILSE  330 (351)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHSCH----H-----HHHHHHH
T ss_pred             HHcCCCCCCcCCCCCChhhhhhH----H-----HHHHHHh
Confidence            99999999999999999999843    2     6666655

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.8e-33  Score=277.88  Aligned_cols=197  Identities=20%  Similarity=0.242  Sum_probs=185.4

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHH
Q psy9492          29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI  108 (584)
Q Consensus        29 d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L  108 (584)
                      .++.+|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL  129 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT-CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            35778999999999999999999999999999999987765 99999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHH
Q psy9492         109 HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI  188 (584)
Q Consensus       109 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v  188 (584)
                      |.|+..|+.+++++|+++|++++..+ .|.||||+|+..| +.+++++|++.|++++..|. .|+||||+|+..|+.+++
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v  206 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG-HVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACV  206 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHT-CHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHH
Confidence            99999999999999999999998654 5999999999998 89999999999999999998 999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         189 TTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       189 ~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      ++|+++|+|++. |..|.|||++|+..++.+     +++.|.+.+..
T Consensus       207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~-----~v~~Ll~~gad  247 (285)
T 3d9h_A          207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEE-----LACLLMDFGAD  247 (285)
T ss_dssp             HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHH-----HHHHHHHTTCC
T ss_pred             HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHH-----HHHHHHHCCCC
Confidence            999999999995 999999999999999998     89998875443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.1e-33  Score=269.78  Aligned_cols=199  Identities=21%  Similarity=0.273  Sum_probs=183.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHH----CCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy9492          30 VNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS  105 (584)
Q Consensus        30 ~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~  105 (584)
                      ++.+|.+|.||||+|+..|+.+++++|++    .|.+++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            36789999999999999999999999997    78999887655 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHH
Q psy9492         106 TCIHQAAQFGHTRIVAYLVAKGI----NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIY  181 (584)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~  181 (584)
                      ||||.|+..|+.+++++|++.|.    +++..|..|.||||+|+..+ +.+++++|++.|++++..+...|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE-CQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            99999999999999999999987    88999999999999999988 89999999999999999994389999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         182 AKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       182 ~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      .|+.+++++|+++|+|++.+|..|.||+++|+..++.+     +++.|.+.+..
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-----~v~~Ll~~ga~  208 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP-----LVRTLVRSGAD  208 (241)
T ss_dssp             TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH-----HHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH-----HHHHHHhcCCC
Confidence            99999999999999999999999999999999999988     89998875443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-33  Score=294.50  Aligned_cols=216  Identities=22%  Similarity=0.241  Sum_probs=173.4

Q ss_pred             hhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492          11 YEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL   90 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   90 (584)
                      .......++++.|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|
T Consensus       120 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~L  198 (437)
T 1n11_A          120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLL  198 (437)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS-CCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHH
Confidence            33445667788888888888888888888888888888888888888888887766544 78888888888888888888


Q ss_pred             HHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCC
Q psy9492          91 IQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKI  170 (584)
Q Consensus        91 l~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~  170 (584)
                      +++|++++..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..| +.+++++|++.|++++..|. 
T Consensus       199 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~-  276 (437)
T 1n11_A          199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG-HAEMVALLLSKQANGNLGNK-  276 (437)
T ss_dssp             GGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHTTTCCTTCCCT-
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHhcCCCCCCCCC-
Confidence            8888888888888888888888888888888888888888888888888888888777 68888888888888888777 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         171 HGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       171 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+     +++.|.+.+.
T Consensus       277 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~-----~v~~Ll~~ga  335 (437)
T 1n11_A          277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK-----LVKFLLQHQA  335 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH-----HHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHH-----HHHHHHhcCC
Confidence            7888888888888888888888888888888888888888888888877     7777776443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.2e-34  Score=285.47  Aligned_cols=208  Identities=17%  Similarity=0.180  Sum_probs=189.6

Q ss_pred             hHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9492          16 TKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA   95 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga   95 (584)
                      ..++.+.|.+ + ++|.+|.+|.||||+|+..|+.+++++|+++|++++..+   |.||||+|+..|+.+++++|+++|+
T Consensus        12 ~~~v~~lL~~-~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll~~ga   86 (285)
T 3kea_A           12 SKQLKSFLSS-K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVKILLFSGL   86 (285)
T ss_dssp             HHHHHHHHHS-T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT---TCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred             HHHHHHHHHh-C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC---CCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            3444444444 4 689999999999999999999999999999999998762   8999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC-CcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCc
Q psy9492          96 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNG-MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  174 (584)
Q Consensus        96 d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g-~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  174 (584)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++.+|..| .||||+|+..| +.+++++|++.|++....  ..|.|
T Consensus        87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~--~~g~t  163 (285)
T 3kea_A           87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN-DVSIVSYFLSEIPSTFDL--AILLS  163 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTT-CHHHHHHHHTTSCTTCCC--STHHH
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCccccc--cCCcc
Confidence            999999999999999999999999999999999999999999 89999999998 899999999999887433  27999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHhcCCCccchHHHHHHHHHHHhcc
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP-FMLLEENIGAPWLGKATVDKITELKDHY  236 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tp-l~lA~~~~~~~~l~~~~~~~l~~~~~~~  236 (584)
                      |||+|+..|+.+++++|+++|+|++.+|..|.|| |++|+..++.+     +++.|.+.+...
T Consensus       164 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~-----~v~~Ll~~gad~  221 (285)
T 3kea_A          164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE-----MLQALFKYDINI  221 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHH-----HHHHHTTSCBCS
T ss_pred             HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHH-----HHHHHHHcCCCC
Confidence            9999999999999999999999999999999998 99999999988     888887754443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.4e-33  Score=283.79  Aligned_cols=218  Identities=22%  Similarity=0.247  Sum_probs=193.8

Q ss_pred             hhhhhHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCcccccC-----------------------
Q psy9492          12 EFELTKVFVGKCVEAGQDVNEPDS-ETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-----------------------   67 (584)
Q Consensus        12 ~~~~~~~~l~~ll~~g~d~n~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~-----------------------   67 (584)
                      ......++|+.|+++|+|+|.+|. .|.||||+|+..|+.+++++|+++|++++..+                       
T Consensus        33 v~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (337)
T 4g8k_A           33 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFL  112 (337)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhh
Confidence            345577899999999999999876 59999999999999999999999998775432                       


Q ss_pred             ---------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC----------CCCCChHHHHHHHhCCHHHHHHHHH-CC
Q psy9492          68 ---------GDLQATPLHWATRQGHLDSVVLLIQHGADPTLM----------DSEGSTCIHQAAQFGHTRIVAYLVA-KG  127 (584)
Q Consensus        68 ---------~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~t~L~~A~~~g~~~~v~~Ll~-~g  127 (584)
                               +..|.||||+|+..|+.++++.|+++|++++.+          +..|.||||.|++.|+.+++++|++ .|
T Consensus       113 ~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g  192 (337)
T 4g8k_A          113 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  192 (337)
T ss_dssp             TTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             hccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence                     235899999999999999999999999988754          4468999999999999999999996 59


Q ss_pred             CCCCCCCCCCCcHHHHHHhhcCC---hhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCC
Q psy9492         128 INVNLQDRNGMTALMWSAYKVFS---LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH-TSSLEIPNA  203 (584)
Q Consensus       128 ~~~~~~d~~g~t~Lh~Aa~~~~~---~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~n~  203 (584)
                      ++++.+|..|.|++|.++..+..   .+++++|++.|+++|.+|. .|+||||+|+..|+.++++.|++. |+|++.+|.
T Consensus       193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~  271 (337)
T 4g8k_A          193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS  271 (337)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred             CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC
Confidence            99999999999999988765532   3578999999999999998 999999999999999999999985 899999999


Q ss_pred             CCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         204 QGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       204 ~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      +|+|||++|++.++.+     +++.|.+.+..
T Consensus       272 ~G~TpL~~A~~~g~~~-----iv~~Ll~~GAd  298 (337)
T 4g8k_A          272 DGKTALLLAVELKLKK-----IAELLCKRGAS  298 (337)
T ss_dssp             TSCBHHHHHHHTTCHH-----HHHHHHTTSCS
T ss_pred             CCCCHHHHHHHcCCHH-----HHHHHHHCCCC
Confidence            9999999999999998     99998775443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.7e-33  Score=255.62  Aligned_cols=159  Identities=36%  Similarity=0.452  Sum_probs=148.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHH
Q psy9492          39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR  118 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~  118 (584)
                      +.|+.||.+|+.++|+.|+++|+++|.++.. |.||||+|+..++.++++.|+++|+|++.+|..|.||||+|++.|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~-g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            4799999999999999999999999987765 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy9492         119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSL  198 (584)
Q Consensus       119 ~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~  198 (584)
                      ++++|+++|++++.+|.+|.||||+|+..| +.+++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++|||+
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENG-HKEVVKLLISKGADVNTSDS-DGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            999999999999999999999999999998 89999999999999999998 9999999999999999999999999998


Q ss_pred             CC
Q psy9492         199 EI  200 (584)
Q Consensus       199 ~~  200 (584)
                      +.
T Consensus       163 e~  164 (169)
T 4gpm_A          163 EH  164 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            75

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.8e-32  Score=257.59  Aligned_cols=190  Identities=23%  Similarity=0.267  Sum_probs=177.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCC-cccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy9492          34 DSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA  112 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~  112 (584)
                      +..+.||||.|+..|+.+.++.|++.+. +++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE-GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3567899999999999999999999876 78776654 999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcC-CCcccccCCCCCcHHHHHHHcCC-----H
Q psy9492         113 QFGHTRIVAYLV-AKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-ASTTIQDKIHGNVALHWAIYAKN-----H  185 (584)
Q Consensus       113 ~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g-a~~~~~d~~~g~TpLh~A~~~g~-----~  185 (584)
                      ..|+.+++++|+ ..+.+++..|..|.||||+|+..| +.+++++|++.| ++++.+|. .|+||||+|+..++     .
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-HIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT-CHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHHHSSCCSHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHHHhccchhhHH
Confidence            999999999999 557899999999999999999998 899999999999 99999998 99999999999998     9


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         186 VAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       186 ~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +++++|+++|+|++.+|..|.||+++|++.++.+     +++.|.+
T Consensus       159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----~~~~Ll~  199 (201)
T 3hra_A          159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE-----ISKILAQ  199 (201)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHHHT
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHh-----HHHHHHh
Confidence            9999999999999999999999999999999998     8887754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.8e-32  Score=261.95  Aligned_cols=191  Identities=21%  Similarity=0.230  Sum_probs=178.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCChHHHHHHH
Q psy9492          37 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG--ADPTL-MDSEGSTCIHQAAQ  113 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g--ad~~~-~d~~g~t~L~~A~~  113 (584)
                      |.||||.|+..|+.++++.|+++|.+++...+..|.||||+|+..|+.+++++|+++|  .+++. +|..|.||||.|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6899999999999999999999999887755667999999999999999999999999  55555 78899999999999


Q ss_pred             hCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492         114 FGHTRIVAYLVAKG--INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  191 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g--~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~L  191 (584)
                      .|+.+++++|+++|  .+++..|..|.||||+|+..+ +.+++++|++.|++++..|. .|+||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK-WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcC-CHhHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999998  899999999999999999988 89999999999999999998 999999999999999999999


Q ss_pred             HhcC-CCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHH-HHHh
Q psy9492         192 VSHT-SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT-ELKD  234 (584)
Q Consensus       192 l~~g-ad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~-~~~~  234 (584)
                      +++| ++++.+|..|.||+++|+..++.+     +++.|. +.+.
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~-----~v~~Ll~~~ga  199 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-----AAVLLVEKYGA  199 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHH-----HHHHHHHHHCC
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHH-----HHHHHHHhcCC
Confidence            9999 999999999999999999999998     888887 4443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.4e-34  Score=275.19  Aligned_cols=197  Identities=24%  Similarity=0.301  Sum_probs=176.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----cccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy9492          31 NEPDSETVTLLHWAAINNRIEIMKYFISQGA----IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  106 (584)
Q Consensus        31 n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  106 (584)
                      +.+|.+|.||||+|+..|+.++++.|++.+.    +++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   80 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT   80 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT-CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            4578999999999999999999999998765    57766554 999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHH
Q psy9492         107 CIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI  180 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~  180 (584)
                      |||+|+..|+.+++++|++.|.+      ++..|..|.||||+|+..| +.+++++|++.|++++.++...|+||||+|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVSLGADVNAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999876      5778889999999999998 8999999999999999998658999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHh
Q psy9492         181 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKD  234 (584)
Q Consensus       181 ~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~  234 (584)
                      ..|+.+++++|+++|+|++.+|..|.||+++|+..++.+     +++.|.+.+.
T Consensus       160 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~-----~~~~Ll~~ga  208 (236)
T 1ikn_D          160 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR-----IQQQLGQLTL  208 (236)
T ss_dssp             HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH-----HHHHHHTTSC
T ss_pred             HcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH-----HHHHHHHcch
Confidence            999999999999999999999999999999999999988     8888877444

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.2e-32  Score=260.27  Aligned_cols=195  Identities=25%  Similarity=0.293  Sum_probs=182.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy9492          34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  113 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~  113 (584)
                      +..+.+|||.|+..|+.+.++.+++.+.......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            34678999999999999999999998766544455569999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         114 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN-RHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999999999999988 89999999999999999998 99999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         194 HTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       194 ~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      +|+|++.+|..|.||+++|+..++.+     +++.|.+.+..
T Consensus       161 ~g~~~~~~~~~g~t~L~~A~~~~~~~-----~v~~Ll~~ga~  197 (231)
T 3aji_A          161 YKASTNIQDTEGNTPLHLACDEERVE-----EAKFLVTQGAS  197 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHH-----HHHHHHHTTCC
T ss_pred             cCCCccccCCCCCCHHHHHHHCCCHH-----HHHHHHHCCCC
Confidence            99999999999999999999999988     88888875443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=9.4e-33  Score=271.54  Aligned_cols=192  Identities=23%  Similarity=0.220  Sum_probs=171.0

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHCCCcccc---cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC------
Q psy9492          37 TVTLLHWAAINNRIE----IMKYFISQGAIVDA---IGGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLM------  100 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~----~v~~Ll~~g~~~~~---~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~gad~~~~------  100 (584)
                      |.||||.|+..|+.+    ++++|+++|++++.   ..+..|.||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            789999999999997    66777789999987   2334599999999999   9999999999998877633      


Q ss_pred             -----CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHhhcCChhhHHHHHh---
Q psy9492         101 -----DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-------------GMTALMWSAYKVFSLDPTRLLIT---  159 (584)
Q Consensus       101 -----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-------------g~t~Lh~Aa~~~~~~~~~~~Ll~---  159 (584)
                           |..|.||||+|+..|+.+++++|+++|++++.+|..             |.||||+|+..| +.+++++|++   
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~~~  160 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK-QWDVVTYLLENPH  160 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT-CHHHHHHHHHCSS
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC-CHHHHHHHHhccc
Confidence                 477999999999999999999999999999999886             999999999888 8999999999   


Q ss_pred             cCCCcccccCCCCCcHHHHHHH--cCCHH-------HHHHHHhcCCCC-------CCCCCCCCCHHHHHHhcCCCccchH
Q psy9492         160 FGASTTIQDKIHGNVALHWAIY--AKNHV-------AITTLVSHTSSL-------EIPNAQGLTPFMLLEENIGAPWLGK  223 (584)
Q Consensus       160 ~ga~~~~~d~~~g~TpLh~A~~--~g~~~-------~v~~Ll~~gad~-------~~~n~~g~tpl~lA~~~~~~~~l~~  223 (584)
                      .|+++|.+|. .|+||||+|+.  .++.+       ++++|+++|+|+       +.+|..|.||+++|++.++.+    
T Consensus       161 ~ga~~n~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~----  235 (256)
T 2etb_A          161 QPASLEATDS-LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE----  235 (256)
T ss_dssp             CCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH----
T ss_pred             cCCCcCccCC-CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHH----
Confidence            9999999998 99999999999  78888       999999999999       899999999999999999988    


Q ss_pred             HHHHHHHHHHhc
Q psy9492         224 ATVDKITELKDH  235 (584)
Q Consensus       224 ~~~~~l~~~~~~  235 (584)
                       +++.|.+....
T Consensus       236 -~v~~Ll~~g~~  246 (256)
T 2etb_A          236 -IFRHILQREFS  246 (256)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             -HHHHHHhCCCC
Confidence             88888775443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=9.3e-33  Score=281.97  Aligned_cols=193  Identities=18%  Similarity=0.130  Sum_probs=165.8

Q ss_pred             hhhhHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCC---HHHHH
Q psy9492          13 FELTKVFVGKCVEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH---LDSVV   88 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~---~~~v~   88 (584)
                      .....++++.|++.|+|+|. +|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+   .++++
T Consensus       106 ~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~-g~TpLh~A~~~g~~~~~~~~~  184 (327)
T 1sw6_A          106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFE  184 (327)
T ss_dssp             HHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHH
T ss_pred             HhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHhcccccHHHHH
Confidence            44556788888999999999 8999999999999999999999999999999987655 9999999999998   78888


Q ss_pred             HHHHCC-CCCCCCCCCCChHHHHHHH----hCCHHHHHHHHHC--------------------CCCCCCCCCCCCcHHHH
Q psy9492          89 LLIQHG-ADPTLMDSEGSTCIHQAAQ----FGHTRIVAYLVAK--------------------GINVNLQDRNGMTALMW  143 (584)
Q Consensus        89 ~Ll~~g-ad~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~d~~g~t~Lh~  143 (584)
                      .|++++ ++++.+|..|.||||+|++    .|+.+++++|++.                    |++++.+|..|.||||.
T Consensus       185 ~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~  264 (327)
T 1sw6_A          185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE  264 (327)
T ss_dssp             HHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHH
T ss_pred             HHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHH
Confidence            888887 7899999999999999999    8999999999987                    89999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       144 Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      |+.       +++|++.  ++|.+|. .|+||||+|+..|+.+++++|+++|||++.+|..|+|||++|++.+
T Consensus       265 a~~-------~~~Ll~~--~~n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          265 NLD-------LKWIIAN--MLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HCS-------HHHHHHH--TTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHH-------HHHHHHh--CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            884       7888888  6888998 9999999999999999999999999999999999999999998754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.1e-32  Score=271.75  Aligned_cols=203  Identities=19%  Similarity=0.208  Sum_probs=174.7

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH----CCCcccc---cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCC
Q psy9492          26 AGQDVNEPDSETVTLLHWAAINNRIEIMKYFIS----QGAIVDA---IGGDLQATPLHWATRQ---GHLDSVVLLIQHGA   95 (584)
Q Consensus        26 ~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~----~g~~~~~---~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~ga   95 (584)
                      .|+..+..|..|.||||.|+..|+.++++.|++    .+++++.   ..+..|.||||+|+..   |+.+++++|+++|+
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            467778899999999999999999999888886    5655542   3345699999999987   99999999999986


Q ss_pred             CC-------C----CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC--------------CCCcHHHHHHhhcCC
Q psy9492          96 DP-------T----LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR--------------NGMTALMWSAYKVFS  150 (584)
Q Consensus        96 d~-------~----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~--------------~g~t~Lh~Aa~~~~~  150 (584)
                      ++       +    .+|..|.||||+|++.|+.+++++|+++|++++.+|.              .|.||||+|+..| +
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-~  160 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN-Q  160 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT-C
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC-C
Confidence            53       2    2567899999999999999999999999999999987              7999999999998 8


Q ss_pred             hhhHHHHHh---cCCCcccccCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCC-------CCCCCCCCHHHH
Q psy9492         151 LDPTRLLIT---FGASTTIQDKIHGNVALHWAIYAKN---------HVAITTLVSHTSSLE-------IPNAQGLTPFML  211 (584)
Q Consensus       151 ~~~~~~Ll~---~ga~~~~~d~~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~~-------~~n~~g~tpl~l  211 (584)
                      .+++++|++   .|++++.+|. .|+||||+|+..|+         .+++++|+++|+|++       .+|..|.|||++
T Consensus       161 ~~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence            999999999   9999999998 99999999999998         899999999999997       499999999999


Q ss_pred             HHhcCCCccchHHHHHHHHHHHhc
Q psy9492         212 LEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       212 A~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      |++.++.+     +++.|.+.+..
T Consensus       240 A~~~g~~~-----iv~~Ll~~ga~  258 (273)
T 2pnn_A          240 AASSGKIG-----VLAYILQREIH  258 (273)
T ss_dssp             HHHTTCHH-----HHHHHHHHHTC
T ss_pred             HHHhChHH-----HHHHHHHCCCC
Confidence            99999999     99999886553

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=9.2e-31  Score=251.45  Aligned_cols=188  Identities=22%  Similarity=0.184  Sum_probs=176.2

Q ss_pred             chhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-cccccCCCCCCcHHHHHHHcCCHHHH
Q psy9492           9 NWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSV   87 (584)
Q Consensus         9 ~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~g~tpLh~A~~~g~~~~v   87 (584)
                      +.+......++++.|+++|++++..|..|.||||+|+..|+.+++++|+++++ +++..+ ..|.||||+|+..|+.+++
T Consensus        30 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~  108 (223)
T 2f8y_A           30 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGML  108 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-TTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCcHHHHHHHhCcHHHH
Confidence            33445567899999999999999999999999999999999999999999987 666554 4599999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccc
Q psy9492          88 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ  167 (584)
Q Consensus        88 ~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~  167 (584)
                      ++|+++|++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..
T Consensus       109 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~  187 (223)
T 2f8y_A          109 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG-SYETAKVLLDHFANRDIT  187 (223)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcC-CHHHHHHHHHcCCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999998 899999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy9492         168 DKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  199 (584)
Q Consensus       168 d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  199 (584)
                      |. .|.||||+|+..|+.+++++|+++|++..
T Consensus       188 ~~-~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          188 DH-MDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CT-TCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             cc-cCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            98 99999999999999999999999999754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.9e-32  Score=267.51  Aligned_cols=198  Identities=17%  Similarity=0.218  Sum_probs=157.3

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccc-------cCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCCCCCC
Q psy9492          31 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA-------IGGDLQATPLHWATRQGHL-DSVVLLIQHGADPTLMDS  102 (584)
Q Consensus        31 n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~~g~tpLh~A~~~g~~-~~v~~Ll~~gad~~~~d~  102 (584)
                      ..+|..+.++|+.|+.+|+.++|++|++.|++...       ..+..|.||||.|+..++. ++++.|++.|+|++.+|.
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            34677788999999999999999999999876421       1233488999999988876 478999999999999999


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q psy9492         103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA  182 (584)
Q Consensus       103 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~  182 (584)
                      +|.||||+|+..|+.+++++|++.|++++.++..|.||+|+|+..+ +.+++++|++.|+++|..|. .|+||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~g~~~n~~d~-~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG-HFQVVKCLLDSNAKPNKKDL-SGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccC-hHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHC
Confidence            9999999999999999999999999999999999999999999888 89999999999999999998 999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         183 KNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       183 g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      |+.+++++|+++|+|++.+|..|.|||++|+..++.+     +++.|.+.+..
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~-----~v~~Ll~~Gad  210 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF-----VVELLLLHGAS  210 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH-----HHHHHHHTTCC
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHH-----HHHHHHHCCCC
Confidence            9999999999999999999999999999999999999     99999875543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=3.4e-31  Score=266.38  Aligned_cols=214  Identities=20%  Similarity=0.222  Sum_probs=186.8

Q ss_pred             hhhHHHHHHHHHcCCCCCC---------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCH
Q psy9492          14 ELTKVFVGKCVEAGQDVNE---------PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL   84 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~---------~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~   84 (584)
                      ....+.++.++..+.++..         .+.+|.||||.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~   86 (299)
T 1s70_B            8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD-GLTALHQACIDDNV   86 (299)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTT-CCBHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCCH
Confidence            3456667777776555433         2346679999999999999999999999999987765 99999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHh-cCCC
Q psy9492          85 DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGAS  163 (584)
Q Consensus        85 ~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~-~ga~  163 (584)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..+ ..++++.++. .|.+
T Consensus        87 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~ll~~~~~~  165 (299)
T 1s70_B           87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA-MEELLQNEVNRQGVD  165 (299)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH-HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc-hHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999887 6777765554 3444


Q ss_pred             ccc--------------------------ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Q psy9492         164 TTI--------------------------QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIG  217 (584)
Q Consensus       164 ~~~--------------------------~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~  217 (584)
                      ++.                          .+. .|.||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~  244 (299)
T 1s70_B          166 IEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK  244 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhhhhhhhHHHHHHHHHHhccCcchhhhcC-CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC
Confidence            432                          344 89999999999999999999999999999999999999999999999


Q ss_pred             CccchHHHHHHHHHHHhc
Q psy9492         218 APWLGKATVDKITELKDH  235 (584)
Q Consensus       218 ~~~l~~~~~~~l~~~~~~  235 (584)
                      .+     +++.|.+.+..
T Consensus       245 ~~-----~v~~Ll~~gad  257 (299)
T 1s70_B          245 EE-----ACRILVENLCD  257 (299)
T ss_dssp             HH-----HHHHHHHTTCC
T ss_pred             HH-----HHHHHHHcCCC
Confidence            98     99999875443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=3.7e-32  Score=271.99  Aligned_cols=211  Identities=18%  Similarity=0.134  Sum_probs=190.0

Q ss_pred             chhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHH
Q psy9492           9 NWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV   88 (584)
Q Consensus         9 ~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~   88 (584)
                      +++......++++.|++.|+++|..|  |.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++++
T Consensus        36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~  112 (285)
T 3kea_A           36 YYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK-GNTALYYAVDSGNMQTVK  112 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCcHHHHHHHcCCHHHHH
Confidence            34445567899999999999999884  899999999999999999999999999987654 999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCC-ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccc
Q psy9492          89 LLIQHGADPTLMDSEG-STCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ  167 (584)
Q Consensus        89 ~Ll~~gad~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~  167 (584)
                      +|+++|++++.+|..| .||||.|+..|+.+++++|+++|++.... ..|.||||+|+..| +.+++++|++.|++++..
T Consensus       113 ~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g-~~~~v~~Ll~~gad~n~~  190 (285)
T 3kea_A          113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNG-HVDMMILLLDYMTSTNTN  190 (285)
T ss_dssp             HHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTT-CHHHHHHHHHHHHHTCTT
T ss_pred             HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcC-hHHHHHHHHHcCCCCCcc
Confidence            9999999999999999 89999999999999999999999877332 28999999999998 899999999999999999


Q ss_pred             cCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhccc
Q psy9492         168 DKIHGNVA-LHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYN  237 (584)
Q Consensus       168 d~~~g~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~~  237 (584)
                      |. .|+|| ||+|+..|+.+++++|+++|+|++.+|.       .|+..++.+     +++.|.+.+....
T Consensus       191 ~~-~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~-----iv~~Ll~~g~~~~  248 (285)
T 3kea_A          191 NS-LLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAE-----IAKMIIEKHVEYK  248 (285)
T ss_dssp             CC-CBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHH-----HHHHHHHHHHHHT
T ss_pred             cC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHH-----HHHHHHHcCCCCC
Confidence            98 99998 9999999999999999999999999984       345677777     8899888555443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1.4e-30  Score=266.87  Aligned_cols=198  Identities=24%  Similarity=0.260  Sum_probs=176.6

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccC---------CCCCCcHHHHHHHcCCHHHHHHHHH-CCCCC
Q psy9492          28 QDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG---------GDLQATPLHWATRQGHLDSVVLLIQ-HGADP   97 (584)
Q Consensus        28 ~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~---------~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~   97 (584)
                      .+++..|..|.||||+|+..|+.+++++|+++|++++...         +..|.||||+|+..|+.+++++|++ .|+++
T Consensus       116 ~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~  195 (337)
T 4g8k_A          116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  195 (337)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT
T ss_pred             chhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc
Confidence            3455677889999999999999999999999999987543         2348999999999999999999996 69999


Q ss_pred             CCCCCCCChHHHHHHHhCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhc-CCCcccccCCCC
Q psy9492          98 TLMDSEGSTCIHQAAQFGH----TRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF-GASTTIQDKIHG  172 (584)
Q Consensus        98 ~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~-ga~~~~~d~~~g  172 (584)
                      +.+|..|.|+++.++..++    ..++++|+++|++++.+|..|.||||+|+..| ..++++.|++. |+++|.+|. .|
T Consensus       196 n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~-~~~~v~~Ll~~~~~~vn~~d~-~G  273 (337)
T 4g8k_A          196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDS-DG  273 (337)
T ss_dssp             TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT-CHHHHHHHHTSTTCCTTCBCT-TS
T ss_pred             CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh-hhHHHHHHHHhcCCcccCcCC-CC
Confidence            9999999999998876654    46889999999999999999999999999988 79999999885 899999998 99


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhccc
Q psy9492         173 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYN  237 (584)
Q Consensus       173 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~~  237 (584)
                      +||||+|+..|+.++|++|+++|||++.+     +||+.|+++++.+     ++++|.+.++..+
T Consensus       274 ~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~-----iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          274 KTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHS-----LVKVLLSHGAKED  328 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHH-----HHHHHHHTTCCC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHH-----HHHHHHHCcCCCC
Confidence            99999999999999999999999999765     5999999999998     9999988665543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.9e-31  Score=242.85  Aligned_cols=155  Identities=31%  Similarity=0.430  Sum_probs=148.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChh
Q psy9492          73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  152 (584)
Q Consensus        73 tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~  152 (584)
                      ++|+.||+.|+.++|+.|+++|+|++.+|..|.||+|.|+..++.+++++|+++|++++.+|..|.||||+|+..| +.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g-~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG-HKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcC-CHH
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999998 899


Q ss_pred             hHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       153 ~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                      ++++|++.|+++|.+|. .|+||||+|+..|+.+++++|+++|+|++.+|.+|+|||++|++.++.+     ++++|.+.
T Consensus        85 ~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~-----iv~~Ll~~  158 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE-----VVKLLEKQ  158 (169)
T ss_dssp             HHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHTC
T ss_pred             HHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH-----HHHHHHHC
Confidence            99999999999999998 9999999999999999999999999999999999999999999999998     89988764


Q ss_pred             Hh
Q psy9492         233 KD  234 (584)
Q Consensus       233 ~~  234 (584)
                      ++
T Consensus       159 GA  160 (169)
T 4gpm_A          159 GG  160 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            44

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-31  Score=279.24  Aligned_cols=201  Identities=30%  Similarity=0.399  Sum_probs=185.5

Q ss_pred             CCCCCCC-CCCCcHHHHHHHcCCHHHHHHHH--------HCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy9492          28 QDVNEPD-SETVTLLHWAAINNRIEIMKYFI--------SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT   98 (584)
Q Consensus        28 ~d~n~~d-~~g~t~Lh~A~~~~~~~~v~~Ll--------~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~   98 (584)
                      .++|..| ..|.||||+|+.+|+.+++++|+        +.|+++|..+.. |.||||+|+..|+.+++++|+++|++++
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~ga~~~  193 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-ENTPLMLAVLARRRRLVAYLMKAGADPT  193 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCC-CCCHHHHHHHcChHHHHHHHHHCCCCCc
Confidence            5778888 79999999999999988877776        899999987755 9999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHCC---CCCCCCCCCCCcHHHHHHhhcC--ChhhHHHHHhcCCCccc-------
Q psy9492          99 LMDSEGSTCIHQAAQFGHTRIVAYLVAKG---INVNLQDRNGMTALMWSAYKVF--SLDPTRLLITFGASTTI-------  166 (584)
Q Consensus        99 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~t~Lh~Aa~~~~--~~~~~~~Ll~~ga~~~~-------  166 (584)
                      .+|..|.||||.|+..|+.+++++|+++|   ++++..|..|.||||+|+..+.  ..+++++|++.|++++.       
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  273 (373)
T 2fo1_E          194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  273 (373)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence            99999999999999999999999999997   8999999999999999998764  68999999999999986       


Q ss_pred             -ccCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         167 -QDKIHGNVALHWAIYAKNHVAITTLVSHT-SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       167 -~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                       .|. .|.||||+|+..|+.+++++|+++| +|++.+|..|.|||++|+..++.+     +++.|.+.+..
T Consensus       274 ~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~-----iv~~Ll~~gad  338 (373)
T 2fo1_E          274 SEKY-KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE-----VVMYLIQQGAS  338 (373)
T ss_dssp             SSSC-CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH-----HHHHHHHTTCC
T ss_pred             cccc-cCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHH-----HHHHHHHcCCC
Confidence             455 8999999999999999999999886 999999999999999999999998     99999875443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.4e-32  Score=266.79  Aligned_cols=195  Identities=27%  Similarity=0.262  Sum_probs=176.8

Q ss_pred             HHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy9492          17 KVFVGKCVE----AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ   92 (584)
Q Consensus        17 ~~~l~~ll~----~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~   92 (584)
                      .++++.|++    .|+++|..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++
T Consensus        21 ~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~   99 (236)
T 1ikn_D           21 KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQ   99 (236)
T ss_dssp             SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHh
Confidence            344444544    45589999999999999999999999999999999999987655 9999999999999999999999


Q ss_pred             CCCC------CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHhhcCChhhHHHHHhcCCCcc
Q psy9492          93 HGAD------PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR-NGMTALMWSAYKVFSLDPTRLLITFGASTT  165 (584)
Q Consensus        93 ~gad------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~  165 (584)
                      +|++      ++..|..|.||||.|+..|+.+++++|+++|++++.+|. .|.||||+|+..| +.+++++|++.|++++
T Consensus       100 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGADVN  178 (236)
T ss_dssp             STTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHTTTCCSC
T ss_pred             cccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCC
Confidence            9976      466788999999999999999999999999999999998 9999999999988 8999999999999999


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHHHHHh
Q psy9492         166 IQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE--IPNAQGLTPFMLLEE  214 (584)
Q Consensus       166 ~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~n~~g~tpl~lA~~  214 (584)
                      ..|. .|.||||+|+..|+.+++++|+++|++..  .++.+|.||.+.+.+
T Consensus       179 ~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          179 RVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             CCCT-TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             cccC-CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            9998 99999999999999999999999999876  889999998876544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.2e-30  Score=244.60  Aligned_cols=182  Identities=25%  Similarity=0.299  Sum_probs=169.2

Q ss_pred             hhhhhHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492          12 EFELTKVFVGKCVEAGQ-DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLL   90 (584)
Q Consensus        12 ~~~~~~~~l~~ll~~g~-d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L   90 (584)
                      ......+.++.+++.+. ++|..|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|
T Consensus        13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~L   91 (201)
T 3hra_A           13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGAQGRTEILAYM   91 (201)
T ss_dssp             HHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHH
T ss_pred             HHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHH
Confidence            34556778888888764 99999999999999999999999999999999999987655 99999999999999999999


Q ss_pred             H-HCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHhhcCC----hhhHHHHHhcCCCc
Q psy9492          91 I-QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG-INVNLQDRNGMTALMWSAYKVFS----LDPTRLLITFGAST  164 (584)
Q Consensus        91 l-~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~Aa~~~~~----~~~~~~Ll~~ga~~  164 (584)
                      + +.+++++.+|..|.||||.|++.|+.+++++|+++| ++++.+|..|.||||+|+..+..    .+++++|++.|+++
T Consensus        92 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A           92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             HHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT
T ss_pred             HhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC
Confidence            9 667899999999999999999999999999999998 99999999999999999988731    89999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         165 TIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       165 ~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      +..|. .|+||||+|+..|+.+++++|+++|
T Consensus       172 ~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          172 SIKDN-SGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TCCCT-TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CccCC-CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99998 9999999999999999999999987

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.1e-31  Score=261.90  Aligned_cols=185  Identities=19%  Similarity=0.120  Sum_probs=169.0

Q ss_pred             hhhhHHHHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCcccccC----------CCCCCcHH
Q psy9492          13 FELTKVFVGKCVEAGQDVNE----PDSETVTLLHWAAIN---NRIEIMKYFISQGAIVDAIG----------GDLQATPL   75 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~----~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~----------~~~g~tpL   75 (584)
                      .+..+.+++.+++.|+++|.    +|.+|.||||+|+..   |+.+++++|+++|++++...          +..|.|||
T Consensus        15 ~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L   94 (256)
T 2etb_A           15 PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL   94 (256)
T ss_dssp             GGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHH
T ss_pred             HHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHH
Confidence            34445688889999999999    899999999999999   99999999999998876433          24599999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CChHHHHHHHhCCHHHHHHHHH---CCCCCCCCCCCCCc
Q psy9492          76 HWATRQGHLDSVVLLIQHGADPTLMDSE-------------GSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMT  139 (584)
Q Consensus        76 h~A~~~g~~~~v~~Ll~~gad~~~~d~~-------------g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~d~~g~t  139 (584)
                      |+|+..|+.+++++|+++|++++.+|..             |.||||.|+..|+.+++++|++   +|++++.+|..|.|
T Consensus        95 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~T  174 (256)
T 2etb_A           95 HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT  174 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCC
Confidence            9999999999999999999999999887             9999999999999999999999   99999999999999


Q ss_pred             HHHHHHh--hcCChh-------hHHHHHhcCCCc-------ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy9492         140 ALMWSAY--KVFSLD-------PTRLLITFGAST-------TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  199 (584)
Q Consensus       140 ~Lh~Aa~--~~~~~~-------~~~~Ll~~ga~~-------~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  199 (584)
                      |||+|+.  .+ +.+       ++++|++.|+++       +.+|. .|+||||+|+..|+.+++++|+++|++..
T Consensus       175 pLh~A~~~~~~-~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          175 VLHALVMIADN-SPENSALVIHMYDGLLQMGARLCPTVQLEEISNH-QGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccC-CchhhHHHHHHHHHHHHcCCCcccccccccccCC-CCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            9999998  44 666       999999999999       88998 99999999999999999999999987643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=2.9e-31  Score=274.92  Aligned_cols=200  Identities=24%  Similarity=0.251  Sum_probs=180.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy9492          27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  106 (584)
Q Consensus        27 g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  106 (584)
                      +.+++..|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.  ..|.|
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t   86 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF-GCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQK   86 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCC
Confidence            5778889999999999999999999999999999999987765 99999999999999999999999996654  57999


Q ss_pred             HHHHHHHhCCHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHHhhcC-ChhhHHHHHhcCCCc
Q psy9492         107 CIHQAAQFGHTRIVAYLVAK----GINVNL-----------------QDRNGMTALMWSAYKVF-SLDPTRLLITFGAST  164 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~-----------------~d~~g~t~Lh~Aa~~~~-~~~~~~~Ll~~ga~~  164 (584)
                      |||.|+..|+.+++++|++.    |.+++.                 .|..|.||||+|+..|. +.+++++|++.|+++
T Consensus        87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~  166 (364)
T 3ljn_A           87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP  166 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence            99999999999999999998    888776                 88899999999998763 589999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         165 TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS-----LEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       165 ~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      +..|. .|.||||+|+..|+.+++++|+++|++     ++.+|..|.|||++|+..++.+     +++.|.+.+..
T Consensus       167 ~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-----~v~~Ll~~gad  236 (364)
T 3ljn_A          167 TAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED-----VAMRFVEMGID  236 (364)
T ss_dssp             TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH-----HHHHHHTTTCC
T ss_pred             cccCC-CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHH-----HHHHHHHcCCC
Confidence            99998 999999999999999999999999999     9999999999999999999998     99998875433

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.5e-30  Score=239.68  Aligned_cols=169  Identities=24%  Similarity=0.366  Sum_probs=153.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCc-ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          37 TVTLLHWAAINNRIEIMKYFISQGAI-VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                      +.+|||.|+..|+.++++.|++++.+ ++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence            46899999999999999999999988 55444 55999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      +.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN-HVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999999999999999999999999988 89999999999999999998 9999999999999999999999999


Q ss_pred             CCCCCCCCCCCCH
Q psy9492         196 SSLEIPNAQGLTP  208 (584)
Q Consensus       196 ad~~~~n~~g~tp  208 (584)
                      +++..+|..|.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            9999999999987

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=8.5e-30  Score=246.86  Aligned_cols=199  Identities=21%  Similarity=0.234  Sum_probs=184.0

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChH
Q psy9492          29 DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTC  107 (584)
Q Consensus        29 d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~t~  107 (584)
                      +++..|..|.++||.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++..+ ..|.||
T Consensus         1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             CccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            35677899999999999999999999999999999887655 9999999999999999999999999988654 459999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-HH
Q psy9492         108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HV  186 (584)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~-~~  186 (584)
                      ||.|+..|+.+++++|++.|++++.+|..|.||||+|+..| +.+++++|++.|++++..|. .|.||||+|+..++ .+
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG-HTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHCCSST
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-HHHHHHHHHhcCCCccccCC-CCCcHHHHHHHhCChHH
Confidence            99999999999999999999999999999999999999988 89999999999999999998 99999999997776 89


Q ss_pred             HHHHHHhcCCCCCCCCC-CCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         187 AITTLVSHTSSLEIPNA-QGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       187 ~v~~Ll~~gad~~~~n~-~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      ++++|++.|++++..+. .|.|||++|+..++.+     +++.|.+.+..
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~-----~v~~Ll~~g~~  202 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT-----VISLLLEAGAN  202 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH-----HHHHHHHHTCC
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHH-----HHHHHHHcCCC
Confidence            99999999999999997 9999999999999998     88888875433

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=7.7e-31  Score=258.39  Aligned_cols=196  Identities=19%  Similarity=0.165  Sum_probs=168.2

Q ss_pred             CCCCCcHHHHHHHcCCHHH----HHHHHHCCCcccccC---CCCCCcHHHHHH---HcCCHHHHHHHHHCCCC-------
Q psy9492          34 DSETVTLLHWAAINNRIEI----MKYFISQGAIVDAIG---GDLQATPLHWAT---RQGHLDSVVLLIQHGAD-------   96 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~----v~~Ll~~g~~~~~~~---~~~g~tpLh~A~---~~g~~~~v~~Ll~~gad-------   96 (584)
                      +..|.++||.|+..|+.+.    +++|++.|++++..+   +..|.||||+|+   ..|+.+++++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4567899999999999995    455555888887554   245899999999   67999999999998754       


Q ss_pred             ----CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHhhcCChhhHHHHH
Q psy9492          97 ----PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD--------------RNGMTALMWSAYKVFSLDPTRLLI  158 (584)
Q Consensus        97 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~g~t~Lh~Aa~~~~~~~~~~~Ll  158 (584)
                          .+..|..|.||||+|+..|+.+++++|+++|++++.+|              ..|.||||+|+..| +.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN-QPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT-CHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC-CHHHHHHHH
Confidence                34455689999999999999999999999999999988              57999999999888 799999999


Q ss_pred             h---cCCCcccccCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCC-------CCCCCCCCCHHHHHHhcCCCc
Q psy9492         159 T---FGASTTIQDKIHGNVALHWAIYAKN---------HVAITTLVSHTSSL-------EIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       159 ~---~ga~~~~~d~~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~-------~~~n~~g~tpl~lA~~~~~~~  219 (584)
                      +   .|++++.+|. .|+||||+|+..|+         .+++++|+++|+|+       +.+|..|.|||++|++.++.+
T Consensus       161 ~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          161 ENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             HCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             hccccCCCCcccCC-CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence            9   8999999998 99999999998887         78999999999988       679999999999999999998


Q ss_pred             cchHHHHHHHHHHHhcc
Q psy9492         220 WLGKATVDKITELKDHY  236 (584)
Q Consensus       220 ~l~~~~~~~l~~~~~~~  236 (584)
                           +++.|.+.....
T Consensus       240 -----~v~~Ll~~g~~~  251 (260)
T 3jxi_A          240 -----IFQHIIRREIAD  251 (260)
T ss_dssp             -----HHHHHHHHHHHH
T ss_pred             -----HHHHHHHhCCCc
Confidence                 888888755443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.5e-30  Score=258.47  Aligned_cols=195  Identities=16%  Similarity=0.142  Sum_probs=161.4

Q ss_pred             hhhHHHHHHHHHcCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCcc-------ccc---CCCCCCcHHH
Q psy9492          14 ELTKVFVGKCVEAGQDVN----EPDSETVTLLHWAAIN---NRIEIMKYFISQGAIV-------DAI---GGDLQATPLH   76 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n----~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~-------~~~---~~~~g~tpLh   76 (584)
                      +..+.+++...+.+.+++    ..|..|.||||+|+..   |+.+++++|+++|+++       +..   .+..|.||||
T Consensus        27 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~  106 (273)
T 2pnn_A           27 QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALH  106 (273)
T ss_dssp             STTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHH
T ss_pred             HHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHH
Confidence            334455566666888887    4689999999999987   9999999999998763       221   2235999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCC--------------CCChHHHHHHHhCCHHHHHHHHH---CCCCCCCCCCCCCc
Q psy9492          77 WATRQGHLDSVVLLIQHGADPTLMDS--------------EGSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGMT  139 (584)
Q Consensus        77 ~A~~~g~~~~v~~Ll~~gad~~~~d~--------------~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~d~~g~t  139 (584)
                      +|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++|++   .|++++.+|..|.|
T Consensus       107 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~t  186 (273)
T 2pnn_A          107 IAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT  186 (273)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCc
Confidence            99999999999999999999999987              79999999999999999999999   99999999999999


Q ss_pred             HHHHHHhhcCC--------hhhHHHHHhcCCCccc-------ccCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCCCCCC
Q psy9492         140 ALMWSAYKVFS--------LDPTRLLITFGASTTI-------QDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNA  203 (584)
Q Consensus       140 ~Lh~Aa~~~~~--------~~~~~~Ll~~ga~~~~-------~d~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~n~  203 (584)
                      |||+|+..+..        .+++++|++.|+++|.       .|. .|+||||+|+..|+.+++++|+++|| |+.....
T Consensus       187 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~  265 (273)
T 2pnn_A          187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR-KGLTPLALAASSGKIGVLAYILQREIHEPECRHA  265 (273)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC-CCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhh
Confidence            99999988732        6899999999999974       787 99999999999999999999999999 8888877


Q ss_pred             CCCCHH
Q psy9492         204 QGLTPF  209 (584)
Q Consensus       204 ~g~tpl  209 (584)
                      .+.+|-
T Consensus       266 ~~~~~~  271 (273)
T 2pnn_A          266 AAHHHH  271 (273)
T ss_dssp             ------
T ss_pred             hhhhcc
Confidence            777664

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=4e-30  Score=241.31  Aligned_cols=163  Identities=21%  Similarity=0.219  Sum_probs=146.3

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy9492          30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIH  109 (584)
Q Consensus        30 ~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~  109 (584)
                      +|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccccc-CccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            5778889999999999999999999999999888876655 889999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q psy9492         110 QAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT  189 (584)
Q Consensus       110 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~  189 (584)
                      .|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..|. .|.||||+|+..|+.++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG-RSEIVKKLLELGADISARDL-TGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhCcHHHHH
Confidence            999999999999999999999999999999999999888 78999999999999998887 8999999999999999999


Q ss_pred             HHHhcC
Q psy9492         190 TLVSHT  195 (584)
Q Consensus       190 ~Ll~~g  195 (584)
                      +|+++|
T Consensus       185 ~Ll~~~  190 (192)
T 2rfm_A          185 IFTEVR  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            998765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.1e-29  Score=231.12  Aligned_cols=159  Identities=23%  Similarity=0.264  Sum_probs=147.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHh
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF  114 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~  114 (584)
                      +...||||.|+..|+.+++++|+++|++++..+.. |.||||+|+. |+.+++++|+++|++++.+|..|.||||.|++.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT-SCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCcc-CccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            34569999999999999999999999999877655 9999999999 999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         115 GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS-TTIQDKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       115 g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~-~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      |+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++ ++..|. .|.||||+|+..|+.+++++|++
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHccCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999988 89999999999998 588887 99999999999999999999999


Q ss_pred             cCCC
Q psy9492         194 HTSS  197 (584)
Q Consensus       194 ~gad  197 (584)
                      +|||
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            9986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.7e-29  Score=231.44  Aligned_cols=160  Identities=26%  Similarity=0.386  Sum_probs=124.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                      +|.||||.|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEE-GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            4677888888888888888888777777766544 778888888888888888888888887777777888888888888


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      +.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            888888888878777777777888888777776 67777888877777777776 7778888888888888888777776


Q ss_pred             CCC
Q psy9492         196 SSL  198 (584)
Q Consensus       196 ad~  198 (584)
                      ++.
T Consensus       159 ~~~  161 (167)
T 3v31_A          159 LKL  161 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=5.8e-30  Score=254.80  Aligned_cols=187  Identities=17%  Similarity=0.191  Sum_probs=173.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCc--ccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHH-
Q psy9492          37 TVTLLHWAAINNRIEIMKYFISQGAI--VDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA-DPTLMDSEGSTCIHQAA-  112 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~t~L~~A~-  112 (584)
                      +.+++|.|+..++.+.++.+++.+.+  +|..+.. |.||||+|+..|+.+++++|++.|+ +++.+|..|.||||.|+ 
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSN-GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            45778899999999999999987766  6666554 9999999999999999999999998 99999999999999999 


Q ss_pred             ----HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHH
Q psy9492         113 ----QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI  188 (584)
Q Consensus       113 ----~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v  188 (584)
                          ..++.+++++|++.|.+.+..|..|.||||+|+..| +.+++++|++.|+++|.+|. .|+||||+|+..|+.+++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g~~~iv  232 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHG-RVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIA  232 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHH
Confidence                678899999999999999999999999999999998 89999999999999999998 999999999999999999


Q ss_pred             HHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         189 TTLVS-HTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       189 ~~Ll~-~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      ++|++ .|+|++.+|..|.||+++|+..++.+     +++.|.+
T Consensus       233 ~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~-----iv~~Ll~  271 (276)
T 4hbd_A          233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSE-----IASMLYS  271 (276)
T ss_dssp             HHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHHHH
T ss_pred             HHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            99999 89999999999999999999999998     8888865

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=4.9e-29  Score=228.97  Aligned_cols=159  Identities=33%  Similarity=0.401  Sum_probs=133.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy9492          34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  113 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~  113 (584)
                      ...+.++||.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+.
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            345667888888888888888888888888876554 8888888888888888888888888888888888888888888


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         114 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|++
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG-HLEIVEVLLKNGADVNAQDK-FGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHH
Confidence            88888888888888888888888888888888877 78888888888888888887 88888888888888888888887


Q ss_pred             cC
Q psy9492         194 HT  195 (584)
Q Consensus       194 ~g  195 (584)
                      .|
T Consensus       168 ~G  169 (169)
T 2y1l_E          168 LN  169 (169)
T ss_dssp             C-
T ss_pred             cC
Confidence            75

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=7.7e-30  Score=251.22  Aligned_cols=186  Identities=18%  Similarity=0.098  Sum_probs=164.2

Q ss_pred             hhhhHHHHHHHHHcCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCcccc---------c-CCCCCCcHH
Q psy9492          13 FELTKVFVGKCVEAGQDVNEPD----SETVTLLHWAA---INNRIEIMKYFISQGAIVDA---------I-GGDLQATPL   75 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~~d----~~g~t~Lh~A~---~~~~~~~v~~Ll~~g~~~~~---------~-~~~~g~tpL   75 (584)
                      .+..+.+++.+++.|.+++..+    ..|.||||+|+   ..|+.+++++|++.|++.+.         . .+..|.|||
T Consensus        18 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L   97 (260)
T 3jxi_A           18 PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTAL   97 (260)
T ss_dssp             GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHH
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHH
Confidence            3445557778888999999766    77999999999   67999999999998865321         1 122589999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCChHHHHHHHhCCHHHHHHHHH---CCCCCCCCCCCCC
Q psy9492          76 HWATRQGHLDSVVLLIQHGADPTLMD--------------SEGSTCIHQAAQFGHTRIVAYLVA---KGINVNLQDRNGM  138 (584)
Q Consensus        76 h~A~~~g~~~~v~~Ll~~gad~~~~d--------------~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~d~~g~  138 (584)
                      |+|+..|+.+++++|+++|++++.+|              ..|.||||+|+..|+.+++++|++   +|++++.+|..|.
T Consensus        98 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~  177 (260)
T 3jxi_A           98 HIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN  177 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCC
Confidence            99999999999999999999999998              689999999999999999999999   9999999999999


Q ss_pred             cHHHHHHhhcCC--------hhhHHHHHhcCCCc-------ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy9492         139 TALMWSAYKVFS--------LDPTRLLITFGAST-------TIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  199 (584)
Q Consensus       139 t~Lh~Aa~~~~~--------~~~~~~Ll~~ga~~-------~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  199 (584)
                      ||||+|+..+..        .+++++|++.|+++       +..|. .|+||||+|+..|+.+++++|+++|++..
T Consensus       178 TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          178 TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN-DGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             CHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC-CCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            999999987732        58999999999999       67887 99999999999999999999999997654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=5.5e-29  Score=230.84  Aligned_cols=168  Identities=20%  Similarity=0.253  Sum_probs=154.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHC-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  113 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~  113 (584)
                      .++.++||.|+..|+.+++++|+++ +.+++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            4678999999999999999999998 556666554 49999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         114 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++++..|. .|.||||+|+..++.+++++|++
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-QDQVAEDLVANGALVSICNK-YGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSSBCCT-TSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCcchhcc-CCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988 79999999999999999998 99999999999999999999999


Q ss_pred             cCCCCCCCCCCC
Q psy9492         194 HTSSLEIPNAQG  205 (584)
Q Consensus       194 ~gad~~~~n~~g  205 (584)
                      +|++++..+.++
T Consensus       160 ~g~~~~~~~~~~  171 (179)
T 3f6q_A          160 MGQNLNRIPYKD  171 (179)
T ss_dssp             TTCCCSCBCCCC
T ss_pred             hhcCcccCCccc
Confidence            999999877655

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=6.2e-29  Score=233.21  Aligned_cols=162  Identities=23%  Similarity=0.226  Sum_probs=154.0

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy9492          64 DAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW  143 (584)
Q Consensus        64 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~  143 (584)
                      |.++ ..|.||||+|+..|+.++++.|+++|++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        29 n~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           29 NYRD-SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             TCCC-TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             hCcC-CCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            3344 449999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchH
Q psy9492         144 SAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGK  223 (584)
Q Consensus       144 Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~  223 (584)
                      |+..+ +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+..++.+    
T Consensus       108 A~~~~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----  181 (192)
T 2rfm_A          108 SIIFG-YSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE----  181 (192)
T ss_dssp             HHHHT-CHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH----
T ss_pred             HHHcC-CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH----
Confidence            99988 89999999999999999998 9999999999999999999999999999999999999999999999998    


Q ss_pred             HHHHHHHHHH
Q psy9492         224 ATVDKITELK  233 (584)
Q Consensus       224 ~~~~~l~~~~  233 (584)
                       +++.|.+.+
T Consensus       182 -~v~~Ll~~~  190 (192)
T 2rfm_A          182 -VIKIFTEVR  190 (192)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHhcc
Confidence             888887744

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=4e-29  Score=248.76  Aligned_cols=177  Identities=24%  Similarity=0.304  Sum_probs=162.6

Q ss_pred             hHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-cccccCCCCCCcHHHHHH-----HcCCHHHH
Q psy9492          16 TKVFVGKCVEAGQD--VNEPDSETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWAT-----RQGHLDSV   87 (584)
Q Consensus        16 ~~~~l~~ll~~g~d--~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~g~tpLh~A~-----~~g~~~~v   87 (584)
                      ..+.++.+++.+.+  +|..|.+|.||||+|+..|+.+++++|++.|+ +++..+.. |.||||+|+     ..++.+++
T Consensus        88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~tpL~~a~~~~~~~~~~~~~v  166 (276)
T 4hbd_A           88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA-GYSPIMLTALATLKTQDDIETV  166 (276)
T ss_dssp             HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTT-SCCHHHHGGGCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCC-CCCHHHHHHHHHhhhhhhHHHH
Confidence            34445555555544  89999999999999999999999999999998 77776554 999999999     66889999


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHh-cCCCccc
Q psy9492          88 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTI  166 (584)
Q Consensus        88 ~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~-~ga~~~~  166 (584)
                      +.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++ .|++++.
T Consensus       167 ~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g-~~~iv~~Ll~~~gad~~~  245 (276)
T 4hbd_A          167 LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG-HKEIAGLLLAVPSCDISL  245 (276)
T ss_dssp             HHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHTSTTCCTTC
T ss_pred             HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHhcCCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999998 8999999999 8999999


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         167 QDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       167 ~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      .|. .|+||||+|+..|+.+++++|++++
T Consensus       246 ~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          246 TDR-DGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCT-TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             cCC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            998 9999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.8e-31  Score=258.04  Aligned_cols=199  Identities=18%  Similarity=0.101  Sum_probs=171.2

Q ss_pred             HHHHHHcCCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy9492          20 VGKCVEAGQDVNEPD---SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD   96 (584)
Q Consensus        20 l~~ll~~g~d~n~~d---~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad   96 (584)
                      ++.|+++|++++..+   .+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE-GITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            467889999887654   46677899999999999999999999999987655 99999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HhhcCChhhHHHHHhcCCCcccccCCCCC
Q psy9492          97 PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWS--AYKVFSLDPTRLLITFGASTTIQDKIHGN  173 (584)
Q Consensus        97 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~A--a~~~~~~~~~~~Ll~~ga~~~~~d~~~g~  173 (584)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|  +..| +.+++++|++.|++++..|. .|.
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~-~~~~v~~Ll~~ga~~~~~~~-~~~  157 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG-YADCATYLADVEQSMGLMNS-GAV  157 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTT-HHHHHHHHHHHHHHTTTSGG-GEE
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcC-hHHHHHHHHHcCCCcccccC-Cch
Confidence            99999999999999999999999999999999999997 5999999999  7777 89999999999999999998 999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHhcCCCccchHH
Q psy9492         174 VALHWAIYAKNHVAITTLVSHTSS--LEIPNAQGLTPFMLLEENIGAPWLGKA  224 (584)
Q Consensus       174 TpLh~A~~~g~~~~v~~Ll~~gad--~~~~n~~g~tpl~lA~~~~~~~~l~~~  224 (584)
                      ||+|.++..+.   .+.|++.|++  ++.+|..|.|||++|+..++.+.+++.
T Consensus       158 ~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          158 YALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             EESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            99996655543   3678899998  778999999999999999998844443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.4e-28  Score=223.68  Aligned_cols=158  Identities=19%  Similarity=0.198  Sum_probs=151.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      .|.||||.|+..|+.++++.|++.|++++.+|..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..+ 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG-   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-
Confidence            3789999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+..++.+     +++.|
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L  154 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS-----VQQVI  154 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH-----HHHHH
Confidence            89999999999999999998 9999999999999999999999999999999999999999999999998     88888


Q ss_pred             HHHHh
Q psy9492         230 TELKD  234 (584)
Q Consensus       230 ~~~~~  234 (584)
                      .+...
T Consensus       155 ~~~~~  159 (167)
T 3v31_A          155 ESHLL  159 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.7e-28  Score=219.14  Aligned_cols=150  Identities=29%  Similarity=0.365  Sum_probs=114.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCH
Q psy9492          38 VTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT  117 (584)
Q Consensus        38 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~  117 (584)
                      .++||.|+..|+.+++++|+++|++++.  +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4677778887888888877777776652  34477788888777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492         118 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  191 (584)
Q Consensus       118 ~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~L  191 (584)
                      +++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++.+|. .|.||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHN-HQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHh
Confidence            7777777777777777777777777777766 67777777777777777776 777777777777777777765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=5.1e-28  Score=222.17  Aligned_cols=155  Identities=28%  Similarity=0.343  Sum_probs=149.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      .+.+|||.|++.|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..| 
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   91 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG-   91 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-
Confidence            3678999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      +.+++++|++.|++++..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|++.++.+     +++.|
T Consensus        92 ~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L  165 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED-----LAEIL  165 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH-----HHHHH
Confidence            89999999999999999998 9999999999999999999999999999999999999999999999988     88877


Q ss_pred             HH
Q psy9492         230 TE  231 (584)
Q Consensus       230 ~~  231 (584)
                      .+
T Consensus       166 ~~  167 (169)
T 2y1l_E          166 QK  167 (169)
T ss_dssp             HT
T ss_pred             HH
Confidence            64

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.8e-28  Score=224.11  Aligned_cols=160  Identities=29%  Similarity=0.340  Sum_probs=140.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCC-CcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy9492          33 PDSETVTLLHWAAINNRIEIMKYFISQG-AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA  111 (584)
Q Consensus        33 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A  111 (584)
                      .|.+|.++||.|+..|+.++++.|++.+ .+++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc-cCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            3577889999999999999999999854 4444444 4488999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492         112 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  191 (584)
Q Consensus       112 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~L  191 (584)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..|. .|+||||+|+. |+.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG-KYEICKLLLQHGADPTKKNR-DGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCC-CCCChhHhHhc-CChHHHHHH
Confidence            9999999999999999999999999999999999888 89999999999999999998 99999999776 889999999


Q ss_pred             HhcCC
Q psy9492         192 VSHTS  196 (584)
Q Consensus       192 l~~ga  196 (584)
                      +++||
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            98886

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.1e-29  Score=245.20  Aligned_cols=180  Identities=23%  Similarity=0.190  Sum_probs=135.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy9492          34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQ  113 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~  113 (584)
                      +..|.||||.|+..++.+.++.|+++|++++..  ..|.||||.|+..|+.++++.|+++|++++.+|..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC--chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            356899999999999999999999999999854  448999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCC-cHHHHH--HHcCCHHHHHH
Q psy9492         114 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN-VALHWA--IYAKNHVAITT  190 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~-TpLh~A--~~~g~~~~v~~  190 (584)
                      .|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|++++..+. .|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQVCKFLVESGAAVFAMTY-SDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCS-SSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcceecC-CCCcchHHHHHHhhhccHHHHHH
Confidence            99999999999999999999999999999999988 89999999999999999998 555 999999  78899999999


Q ss_pred             HHhcCCCCCCC---------CCCCCCHHHHHHhcCC
Q psy9492         191 LVSHTSSLEIP---------NAQGLTPFMLLEENIG  217 (584)
Q Consensus       191 Ll~~gad~~~~---------n~~g~tpl~lA~~~~~  217 (584)
                      |+++|++++..         +..+.+|.+++.+.|.
T Consensus       158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            99999998876         5668888888877665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.7e-27  Score=214.90  Aligned_cols=151  Identities=24%  Similarity=0.302  Sum_probs=144.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      ..||||.|+..|+.++++.|+++|++++ .|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG-H   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-C
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-h
Confidence            3589999999999999999999999887 5889999999999999999999999999999999999999999999988 8


Q ss_pred             hhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       151 ~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      .+++++|++.|++++..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+..++.+     +++.|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-----LAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH-----HHHHh
Confidence            9999999999999999998 9999999999999999999999999999999999999999999999988     77765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.5e-27  Score=219.40  Aligned_cols=159  Identities=20%  Similarity=0.235  Sum_probs=150.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGAD-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      +.||||.|+..|+.++++.|++.|.+ ++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG-   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC-
Confidence            46899999999999999999999977 7889999999999999999999999999999999999999999999999988 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      +.+++++|++.|++++..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+..++.+     +++.|
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L  154 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK-----VQQVI  154 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-----HHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHH-----HHHHH
Confidence            89999999999999999998 9999999999999999999999999999999999999999999999988     88888


Q ss_pred             HHHHhcc
Q psy9492         230 TELKDHY  236 (584)
Q Consensus       230 ~~~~~~~  236 (584)
                      .+.....
T Consensus       155 ~~~~~~~  161 (172)
T 3v30_A          155 ENHILKL  161 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8755543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=8.5e-28  Score=218.66  Aligned_cols=154  Identities=26%  Similarity=0.320  Sum_probs=148.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      ..||||.|+..|+.++++.|+++|++++.+|..|.||||.|+. |+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~   82 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG-F   82 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-C
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-C
Confidence            5699999999999999999999999999999999999999999 9999999999999999999999999999999988 8


Q ss_pred             hhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS-LEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       151 ~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      .+++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++|++ ++.+|..|.||+++|+..++.+     +++.|
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~-----~~~~L  156 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE-----VVSLM  156 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH-----HHHHH
Confidence            9999999999999999998 999999999999999999999999998 5999999999999999999998     88888


Q ss_pred             HHH
Q psy9492         230 TEL  232 (584)
Q Consensus       230 ~~~  232 (584)
                      .+.
T Consensus       157 l~~  159 (162)
T 1ihb_A          157 QAN  159 (162)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            763

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=1.1e-28  Score=251.76  Aligned_cols=209  Identities=14%  Similarity=0.113  Sum_probs=165.1

Q ss_pred             hhhhHHHHHHHHHcCCCCCCC-----------------CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHH
Q psy9492          13 FELTKVFVGKCVEAGQDVNEP-----------------DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPL   75 (584)
Q Consensus        13 ~~~~~~~l~~ll~~g~d~n~~-----------------d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL   75 (584)
                      .+...++++.|+++|++++..                 .....+.+|.|+..+..++++.|++.|+++|...+..|.|||
T Consensus        56 ~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpL  135 (327)
T 1sw6_A           56 DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL  135 (327)
T ss_dssp             CHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHH
T ss_pred             cCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHH
Confidence            446789999999999987762                 112223458888888899999999999999984445599999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCC---HHHHHHHHHCC-CCCCCCCCCCCcHHHHHHh----h
Q psy9492          76 HWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH---TRIVAYLVAKG-INVNLQDRNGMTALMWSAY----K  147 (584)
Q Consensus        76 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~d~~g~t~Lh~Aa~----~  147 (584)
                      |+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+   .++++.|++.+ .+++.+|..|.||||+|+.    .
T Consensus       136 h~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~  215 (327)
T 1sw6_A          136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT  215 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTST
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999998   67888888875 7799999999999999998    5


Q ss_pred             cCChhhHHHHHhc--------------------CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy9492         148 VFSLDPTRLLITF--------------------GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT  207 (584)
Q Consensus       148 ~~~~~~~~~Ll~~--------------------ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~t  207 (584)
                      | +.+++++|++.                    |++++..|. .|.||||.|+.      +++|+++  +++.+|..|.|
T Consensus       216 g-~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~-~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~T  285 (327)
T 1sw6_A          216 G-CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG-ERKDSILENLD------LKWIIAN--MLNAQDSNGDT  285 (327)
T ss_dssp             T-CHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCC
T ss_pred             c-cHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc-cCCChhHHHHH------HHHHHHh--CCCCCCCCCCC
Confidence            5 78999999887                    899999998 99999999995      8999998  68999999999


Q ss_pred             HHHHHHhcCCCccchHHHHHHHHHHHhcc
Q psy9492         208 PFMLLEENIGAPWLGKATVDKITELKDHY  236 (584)
Q Consensus       208 pl~lA~~~~~~~~l~~~~~~~l~~~~~~~  236 (584)
                      |||+|+..++.+     +++.|.+.+...
T Consensus       286 pLh~A~~~g~~~-----~v~~Ll~~Gad~  309 (327)
T 1sw6_A          286 CLNIAARLGNIS-----IVDALLDYGADP  309 (327)
T ss_dssp             HHHHHHHHCCHH-----HHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHH-----HHHHHHHcCCCC
Confidence            999999999998     999998755443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.1e-27  Score=214.72  Aligned_cols=153  Identities=21%  Similarity=0.261  Sum_probs=129.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          37 TVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                      |.||||.|+..|+.++++.|+++ +.+++..+.. |.||||+ +..|+.++++.|+++|++++.+|..|.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT-SCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCC-CCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            45788888888888888888887 3366665544 8888888 8888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy9492         116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  194 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~  194 (584)
                      +.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++. ++++..|. .|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~-~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhC-hHHHHHHHHhc-cCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            888888888888888888888888888888887 78888888888 88888887 888888888888888888888864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.1e-27  Score=219.01  Aligned_cols=161  Identities=22%  Similarity=0.300  Sum_probs=149.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhc
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKV  148 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~  148 (584)
                      .+.+|||.|+..|+.++++.|++. +.+++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            377999999999999999999998 6789999999999999999999999999999999999999999999999999998


Q ss_pred             CChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHH
Q psy9492         149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDK  228 (584)
Q Consensus       149 ~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~  228 (584)
                       +.+++++|++.|++++.+|. .|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|.+.++.+     +++.
T Consensus        84 -~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~-----~~~~  156 (179)
T 3f6q_A           84 -HRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL-----LRER  156 (179)
T ss_dssp             -CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHH-----HHHH
T ss_pred             -CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHH-----HHHH
Confidence             89999999999999999998 9999999999999999999999999999999999999999999987777     8888


Q ss_pred             HHHHHhccc
Q psy9492         229 ITELKDHYN  237 (584)
Q Consensus       229 l~~~~~~~~  237 (584)
                      |.+.+...+
T Consensus       157 L~~~g~~~~  165 (179)
T 3f6q_A          157 AEKMGQNLN  165 (179)
T ss_dssp             HHHTTCCCS
T ss_pred             HHHhhcCcc
Confidence            877555443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.1e-27  Score=215.85  Aligned_cols=155  Identities=22%  Similarity=0.281  Sum_probs=145.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhh
Q psy9492          69 DLQATPLHWATRQGHLDSVVLLIQ-HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK  147 (584)
Q Consensus        69 ~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~  147 (584)
                      ..|.||||.|+..|+.++++.|++ .+.+++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            447899999999999999999998 4578888899999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHH
Q psy9492         148 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVD  227 (584)
Q Consensus       148 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~  227 (584)
                      + +.+++++|++.|++++..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|.+ ++.+     +++
T Consensus        86 ~-~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~-----i~~  157 (165)
T 3twr_A           86 G-HYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTD-----IQD  157 (165)
T ss_dssp             T-CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHH-----HHH
T ss_pred             C-cHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChH-----HHH
Confidence            8 89999999999999999998 99999999999999999999999999999999999999999877 6666     777


Q ss_pred             HHHH
Q psy9492         228 KITE  231 (584)
Q Consensus       228 ~l~~  231 (584)
                      +|.+
T Consensus       158 ~L~~  161 (165)
T 3twr_A          158 LLRG  161 (165)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            7754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1e-26  Score=210.18  Aligned_cols=152  Identities=26%  Similarity=0.379  Sum_probs=145.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      +.||||.|+..|+.++++.|++. +.+++.+|..|.||||. +..|+.+++++|+++|++++.+|..|.||||+|+..| 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG-   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-
Confidence            46899999999999999999998 45999999999999999 9999999999999999999999999999999999998 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      +.+++++|++.|++++.+|. .|+||||+|+..|+.+++++|+++ +|++.+|..|.||+++|++.++.+     +++.|
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~-----~v~~L  152 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQD-----LVDIL  152 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHH-----HHHHH
T ss_pred             cHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHH-----HHHHH
Confidence            89999999999999999998 999999999999999999999999 999999999999999999999988     88877


Q ss_pred             HH
Q psy9492         230 TE  231 (584)
Q Consensus       230 ~~  231 (584)
                      .+
T Consensus       153 l~  154 (156)
T 1bd8_A          153 QG  154 (156)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.6e-26  Score=209.14  Aligned_cols=140  Identities=21%  Similarity=0.208  Sum_probs=97.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc-HHHHHHhhc
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT-ALMWSAYKV  148 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~Lh~Aa~~~  148 (584)
                      .|.||||+|+..|+.++++.|+++|++++.+|..|.||||.|+ .|+.+++++|+++|++++.+|..|.| |||+|+..|
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~   89 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCC
Confidence            3677777777777777777777777777777777777777774 77777788887777777777777777 888888777


Q ss_pred             CChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy9492         149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLL  212 (584)
Q Consensus       149 ~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA  212 (584)
                       +.+++++|+++|++++..|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||.+-+
T Consensus        90 -~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           90 -FLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             -CHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             -CHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence             67888888888888888877 788888888888888888888888888888888888876643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=6.5e-27  Score=218.23  Aligned_cols=163  Identities=18%  Similarity=0.160  Sum_probs=125.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy9492          37 TVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL----DSVVLLIQHGADPTLMDSEGSTCIHQAA  112 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~gad~~~~d~~g~t~L~~A~  112 (584)
                      +.++|+.|+..|+.+.++.+++.+.+  ..++..|.||||+|+..|+.    +++++|+++|+|++.+|..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            46788888888888888888877643  33324488888888888875    4888888888888888888888888888


Q ss_pred             HhCC------HHHHHHHHHCCCCCCCCCCCCC-cHHHHHHhhcC----ChhhHHHHHh-cCCCcccccCCCCCcHHHHHH
Q psy9492         113 QFGH------TRIVAYLVAKGINVNLQDRNGM-TALMWSAYKVF----SLDPTRLLIT-FGASTTIQDKIHGNVALHWAI  180 (584)
Q Consensus       113 ~~g~------~~~v~~Ll~~g~~~~~~d~~g~-t~Lh~Aa~~~~----~~~~~~~Ll~-~ga~~~~~d~~~g~TpLh~A~  180 (584)
                      ..++      .+++++|+++|++++.+|..|. ||||+|+..+.    ..+++++|++ .|++++..|. .|.||||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~-~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT-TSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC-CCCCHHHHHH
Confidence            8876      4678888888888888888888 88888877332    2357777887 7888888887 7888888888


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCC
Q psy9492         181 YAKNHVAITTLVSHTSSLEIPN  202 (584)
Q Consensus       181 ~~g~~~~v~~Ll~~gad~~~~n  202 (584)
                      ..|+.+++++|.+...+.+.++
T Consensus       163 ~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          163 RCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             TTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HcCCHHHHHHHHHHHHHHhccc
Confidence            8888888888877665555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=4.4e-26  Score=201.31  Aligned_cols=133  Identities=20%  Similarity=0.232  Sum_probs=76.3

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CC
Q psy9492          27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSE-GS  105 (584)
Q Consensus        27 g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~  105 (584)
                      +++++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+. |+.+++++|+++|++++.+|.. |.
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF-GRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-CCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCC-CCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            4555666666666666666666666666666666665554433 5666666666 6666666666666666555555 55


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCC
Q psy9492         106 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA  162 (584)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga  162 (584)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~-~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG-HRDIARYLHAATG  135 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHT-CHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHcCC
Confidence            5555555555555555555555555555555555555555444 4555555555444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=5.6e-26  Score=220.93  Aligned_cols=160  Identities=16%  Similarity=0.127  Sum_probs=119.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      .|.||||.|++.|+.+.++.|+++|++++. +..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..| 
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g-   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG-   81 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT-
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-
Confidence            489999999999999999999999999986 478999999999999999999999999999999999999999999998 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHH--HhcCCCccchHHHH
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL-TPFMLL--EENIGAPWLGKATV  226 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~-tpl~lA--~~~~~~~~l~~~~~  226 (584)
                      +.+++++|++.|+++|.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|. ||+++|  ...++.+     ++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~-----~~  155 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ-----CS  155 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC-----HH
T ss_pred             CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH-----HH
Confidence            89999999999999999998 999999999999999999999999999999998887 999999  7778899     99


Q ss_pred             HHHHHHHhccc
Q psy9492         227 DKITELKDHYN  237 (584)
Q Consensus       227 ~~l~~~~~~~~  237 (584)
                      +.|.+......
T Consensus       156 ~~Ll~~~a~~~  166 (239)
T 1ycs_B          156 QFLYGVQEKMG  166 (239)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHhhhccc
Confidence            99988655543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=7.6e-26  Score=199.77  Aligned_cols=134  Identities=22%  Similarity=0.263  Sum_probs=128.0

Q ss_pred             CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC-CC
Q psy9492          60 GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-GM  138 (584)
Q Consensus        60 g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~  138 (584)
                      +++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+. |+.+++++|+++|++++.+|.. |.
T Consensus         2 ~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGS-SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCC-CSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCC-CccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            4567766655 9999999999999999999999999999999999999999999 9999999999999999999999 99


Q ss_pred             cHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy9492         139 TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  197 (584)
Q Consensus       139 t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad  197 (584)
                      ||||+|+..| +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|||
T Consensus        80 t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAAREG-FLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHT-CHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHcC-CHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999998 89999999999999999998 999999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=8.3e-26  Score=204.51  Aligned_cols=146  Identities=21%  Similarity=0.207  Sum_probs=119.8

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh-HH
Q psy9492          30 VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST-CI  108 (584)
Q Consensus        30 ~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t-~L  108 (584)
                      .+..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+ .|+.+++++|+++|++++.+|..|.| ||
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY-GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPV   82 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            3556789999999999999999999999999999987664 999999985 99999999999999999999999999 99


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHH
Q psy9492         109 HQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA  179 (584)
Q Consensus       109 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A  179 (584)
                      |+|++.|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..|. .|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~-~~~~v~~Ll~~ga~~~~~~~-~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG-HRDVARYLRAAAGGTRGSNH-ARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHSSCC------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhC-HHHHHHHHHHcCCCCCccCc-CcCcccccC
Confidence            9999999999999999999999999999999999999998 89999999999999999998 999998744

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.3e-26  Score=222.17  Aligned_cols=163  Identities=21%  Similarity=0.180  Sum_probs=142.1

Q ss_pred             HHHHHHCCCcccccC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCC
Q psy9492          53 MKYFISQGAIVDAIG--GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV  130 (584)
Q Consensus        53 v~~Ll~~g~~~~~~~--~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  130 (584)
                      ++.|+++|++++...  +..|.||||+|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            467889998877543  334678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy9492         131 NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA--IYAKNHVAITTLVSHTSSLEIPNAQGLTP  208 (584)
Q Consensus       131 ~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A--~~~g~~~~v~~Ll~~gad~~~~n~~g~tp  208 (584)
                      +.+|..|.||||+|+..| +.+++++|++.|++++..++..|+||||+|  +..|+.+++++|+++|+|++.+|..|.||
T Consensus        81 n~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCN-DTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTT-CHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             CCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence            999999999999999988 899999999999999999754999999999  99999999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy9492         209 FMLLEENI  216 (584)
Q Consensus       209 l~lA~~~~  216 (584)
                      ++.+....
T Consensus       160 l~~~~~~~  167 (229)
T 2vge_A          160 LWDYSAEF  167 (229)
T ss_dssp             SSCBCCSS
T ss_pred             HHHHhhcc
Confidence            87554443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1e-25  Score=210.11  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=140.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHhCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQFGHT----RIVAYLVAKGINVNLQDRNGMTALMWSA  145 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa  145 (584)
                      +.++|+.|++.|+.+.++.+++.+.  +.++ ..|.||||+|+..|+.    +++++|+++|++++.+|..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4689999999999999999998764  4555 7799999999999975    5999999999999999999999999999


Q ss_pred             hhcCC-----hhhHHHHHhcCCCcccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCCCCCCHHHHHH
Q psy9492         146 YKVFS-----LDPTRLLITFGASTTIQDKIHGN-VALHWAIYAK-----NHVAITTLVS-HTSSLEIPNAQGLTPFMLLE  213 (584)
Q Consensus       146 ~~~~~-----~~~~~~Ll~~ga~~~~~d~~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~gad~~~~n~~g~tpl~lA~  213 (584)
                      ..+..     .+++++|++.|+++|.+|. .|+ ||||+|+..+     +.+++++|++ +|+|++.+|..|+|||++|.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            88732     5789999999999999998 999 9999999944     4679999999 99999999999999999999


Q ss_pred             hcCCCccchHHHHHHHHHHHhcc
Q psy9492         214 ENIGAPWLGKATVDKITELKDHY  236 (584)
Q Consensus       214 ~~~~~~~l~~~~~~~l~~~~~~~  236 (584)
                      +.++.+     +++.|.+...+.
T Consensus       163 ~~~~~~-----~v~~L~~~~~~~  180 (186)
T 3t8k_A          163 RCQKPI-----ALKMMEDYIKKY  180 (186)
T ss_dssp             TTTCHH-----HHHHHHHHHHHH
T ss_pred             HcCCHH-----HHHHHHHHHHHH
Confidence            999988     888888754443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.8e-24  Score=184.66  Aligned_cols=125  Identities=37%  Similarity=0.538  Sum_probs=106.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      |.||||+|+..|+.++++.|+++|++++.+|..|.||||.|+..++.+++++|+++|++++.+|..|.||||+|+..+ +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-H   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-C
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-h
Confidence            778888888888888888888888888888888888888888888888888888888888888888888888888777 7


Q ss_pred             hhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy9492         151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  197 (584)
Q Consensus       151 ~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad  197 (584)
                      .+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|||
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888888888888887 888888888888888888888888876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4.4e-24  Score=188.37  Aligned_cols=124  Identities=31%  Similarity=0.364  Sum_probs=101.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      .+.||||+|+..|+.++++.|+++|++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| 
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-   91 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG-   91 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-
Confidence            3667888888888888888888888888888888888888888888888888888888888888888888888888777 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      +.+++++|++.|++++..|. .|+||||+|+..|+.+++++|+++|
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            68888888888888888887 8888888888888888888888765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=3.2e-23  Score=179.42  Aligned_cols=126  Identities=40%  Similarity=0.575  Sum_probs=121.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                      +|.||||.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            5899999999999999999999999999887655 999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCC
Q psy9492         116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS  163 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~  163 (584)
                      +.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-HLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-cHHHHHHHHHcCCC
Confidence            999999999999999999999999999999988 89999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.7e-23  Score=184.65  Aligned_cols=127  Identities=33%  Similarity=0.369  Sum_probs=119.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy9492          33 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA  112 (584)
Q Consensus        33 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~  112 (584)
                      ....|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY-GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            4567889999999999999999999999999987655 999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcC
Q psy9492         113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG  161 (584)
Q Consensus       113 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g  161 (584)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~-~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG-NEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCC-CHHHHHHHHHcC
Confidence            999999999999999999999999999999999988 899999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=4.8e-24  Score=188.28  Aligned_cols=132  Identities=28%  Similarity=0.322  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy9492          27 GQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGST  106 (584)
Q Consensus        27 g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  106 (584)
                      |+|+ .+|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            5677 67788888888888888888888888888888766544 888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcC
Q psy9492         107 CIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG  161 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g  161 (584)
                      |||+|++.|+.+++++|+++|++++.+|..|.||+|+|+..+ ..+++++|.+.+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~-~~~~l~~l~~~~  132 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES-MKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHH-HHHHHSCC----
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhcc-HHHHHhhccccc
Confidence            888888888888888888888888888888888888887666 555655555443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.1e-25  Score=232.54  Aligned_cols=166  Identities=13%  Similarity=0.081  Sum_probs=134.4

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccc--CCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9492          18 VFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGA   95 (584)
Q Consensus        18 ~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga   95 (584)
                      +..+.++++|.+       +.||||+|+..|+.+++++|+++|+.....  .+..|.||||+|+..|+.++|++|+++|+
T Consensus        80 ~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ga  152 (376)
T 2aja_A           80 QLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP  152 (376)
T ss_dssp             THHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             HHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            344555555543       459999999999999999999998732111  11236789999999999999999999997


Q ss_pred             CC---CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-hhcCChhhHHHHHhcCCCcccccC
Q psy9492          96 DP---TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL--QDRNGMTALMWSA-YKVFSLDPTRLLITFGASTTIQDK  169 (584)
Q Consensus        96 d~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~Lh~Aa-~~~~~~~~~~~Ll~~ga~~~~~d~  169 (584)
                      |+   +..+.. .||||.|+..|+.+++++|+++|++++.  .|..|.||||+|+ .+| +.+++++|++.|+       
T Consensus       153 d~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G-~~eiv~~Ll~~ga-------  223 (376)
T 2aja_A          153 TEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG-HHNVINFLLDCPV-------  223 (376)
T ss_dssp             TTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC-CHHHHHHHTTSHH-------
T ss_pred             CccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC-CHHHHHHHHhCCC-------
Confidence            63   222223 8999999999999999999999999887  8888999999999 888 8999999999763       


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy9492         170 IHGNVALHWAIYAKNHVAITTLVSHTSSLEI  200 (584)
Q Consensus       170 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~  200 (584)
                       .|.||||+|+..|+.+++++|+++|++++.
T Consensus       224 -~~~taL~~Aa~~g~~evv~lL~~~ga~~~~  253 (376)
T 2aja_A          224 -MLAYAEIHEFEYGEKYVNPFIARHVNRLKE  253 (376)
T ss_dssp             -HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH
T ss_pred             -ccchHHHHHHHCCCHHHHHHHHhcCccccc
Confidence             378999999999999999999988876543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=6.6e-24  Score=187.38  Aligned_cols=120  Identities=26%  Similarity=0.320  Sum_probs=74.4

Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCC
Q psy9492          94 GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGN  173 (584)
Q Consensus        94 gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~  173 (584)
                      |+|+ .+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++++..|. .|+
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~-~g~   77 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG-HLKVVELLLQHKALVNTTGY-QND   77 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCG-GGC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCcccCcCC-CCC
Confidence            4455 45566666666666666666666666666666666666666666666555 56666666666666666665 666


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Q psy9492         174 VALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       174 TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~  216 (584)
                      ||||+|+..|+.+++++|+++|+|++.+|..|.||+++|...+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhcc
Confidence            6666666666666666666666666666666666666665544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3e-23  Score=192.89  Aligned_cols=140  Identities=24%  Similarity=0.251  Sum_probs=128.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHH
Q psy9492          34 DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAA  112 (584)
Q Consensus        34 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~t~L~~A~  112 (584)
                      +.+|.||||+|+..|+.++++.|++ |++++..+.. |.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578899999999999999999999 9999987655 9999999999999999999999999999988 88999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492         113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV  192 (584)
Q Consensus       113 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll  192 (584)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..+. .                 . .+.|||++|+..|..++++.|.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-~-----------------~-~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-T-----------------T-PKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH-T-----------------C-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc-C-----------------c-ccccHHHHHHHcCHHHHHHHHH
Confidence            9999999999999999999999999999999997652 1                 2 6789999999999999999998


Q ss_pred             hc
Q psy9492         193 SH  194 (584)
Q Consensus       193 ~~  194 (584)
                      ++
T Consensus       180 ~~  181 (183)
T 3deo_A          180 GQ  181 (183)
T ss_dssp             TC
T ss_pred             Hh
Confidence            65

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2e-23  Score=203.51  Aligned_cols=142  Identities=24%  Similarity=0.251  Sum_probs=126.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHH
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD-SEGSTCIHQAAQ  113 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~t~L~~A~~  113 (584)
                      .+|.||||+|+..|+.++++.|++ |++++..+.. |.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            467899999999999999999999 8899887755 9999999999999999999999999999888 789999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         114 FGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+.                  +. .+.||||+|+..|+.+++++|++
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~-~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------TT-PKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TC-CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------cc-CCCCHHHHHHHcChHHHHHHHHH
Confidence            999999999999999999999999999999986542                  12 78899999999999999999998


Q ss_pred             cCCC
Q psy9492         194 HTSS  197 (584)
Q Consensus       194 ~gad  197 (584)
                      ++.+
T Consensus       182 ~~~~  185 (244)
T 3ui2_A          182 QVFE  185 (244)
T ss_dssp             HHEE
T ss_pred             hccc
Confidence            7654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=202.24  Aligned_cols=140  Identities=19%  Similarity=0.161  Sum_probs=124.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTL------MDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTAL  141 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~------~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~L  141 (584)
                      +.++||.|+..|+.+.++.|++.|+|++.      .|..|.||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34679999999999999999999999988      689999999999997   899999999999999999999999999


Q ss_pred             HHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Q psy9492         142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGA  218 (584)
Q Consensus       142 h~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~  218 (584)
                      |+|+..| +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|+++|++      .|.|||++|++.++.
T Consensus       231 h~A~~~g-~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYN-QPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTT-CHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcC-CHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999988 89999999999999999998 999999999999999999999999986      589999999988764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=2.4e-24  Score=210.11  Aligned_cols=168  Identities=20%  Similarity=0.182  Sum_probs=145.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                      .+.+++..++..|+.+.++.+...+.+++    ..|.||||+|+..|+.++++.|++ |++++.+|..|.||||+|+..|
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g   88 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLG   88 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHHH----HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCCcccccccccccccc----cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCC
Confidence            44556666666666666555555555554    237899999999999999999999 9999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy9492         116 HTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  194 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~  194 (584)
                      +.+++++|+++|++++.+| ..|.||||+|+..| +.+++++|++.|++++.+|. .|+||||+|+..++          
T Consensus        89 ~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~~~----------  156 (244)
T 3ui2_A           89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV-RPEVVEALVELGADIEVEDE-RGLTALELAREILK----------  156 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHHT----------
T ss_pred             CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHHh----------
Confidence            9999999999999999998 78999999999998 89999999999999999998 99999999997332          


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         195 TSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       195 gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                             +..+.||+++|++.++.+     +++.|.+.
T Consensus       157 -------~~~~~~~l~~a~~~g~~~-----iv~~L~~~  182 (244)
T 3ui2_A          157 -------TTPKGNPMQFGRRIGLEK-----VINVLEGQ  182 (244)
T ss_dssp             -------TCCCSSHHHHHHHHHHHH-----HHHHHHHH
T ss_pred             -------ccCCCCHHHHHHHcChHH-----HHHHHHHh
Confidence                   367899999999999888     88888774

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=6.8e-23  Score=196.62  Aligned_cols=135  Identities=27%  Similarity=0.314  Sum_probs=111.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHhhc
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKV  148 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~Aa~~~  148 (584)
                      .|.||||+|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            378999999999999999999999999999999999999999999999999999998 9999999999999999999988


Q ss_pred             CChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy9492         149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGL  206 (584)
Q Consensus       149 ~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~  206 (584)
                       +.+++++|++.|++++..|. .|.||||+|+..|+.++++.|++.|++.+.+|.+|.
T Consensus       152 -~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          152 -YADIVQLLLAKGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             -CHHHHHHHHHHTCCSCCCCT-TSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             -CHHHHHHHHHcCCCCccccC-CCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence             79999999999999999998 999999999999999999999999998888776654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=203.06  Aligned_cols=142  Identities=20%  Similarity=0.134  Sum_probs=124.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCccccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChH
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAI-----GGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLMDSEGSTC  107 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~-----~~~~g~tpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~t~  107 (584)
                      .+.++||.|+..|+.+.++.|++.|++++..     .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            3457899999999999999999999999873     345599999999997   89999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q psy9492         108 IHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  185 (584)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~  185 (584)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++       .|.||||+|+..|+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~-~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH-HKECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHT-CHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            99999999999999999999999999999999999999988 89999999998864       589999999998864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.8e-22  Score=187.72  Aligned_cols=137  Identities=23%  Similarity=0.285  Sum_probs=125.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHhhc
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKV  148 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~Aa~~~  148 (584)
                      .|.||||+|+..|+.++++.|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+..|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            47899999999999999999999 99999999999999999999999999999999999999998 88999999999988


Q ss_pred             CChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHH
Q psy9492         149 FSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDK  228 (584)
Q Consensus       149 ~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~  228 (584)
                       +.+++++|++.|++++.+|. .|+||||+|+..++.                 ..+.+|++.|++.+..+     +++.
T Consensus       122 -~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~-----i~~~  177 (183)
T 3deo_A          122 -RPEVVEALVELGADIEVEDE-RGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEK-----VINV  177 (183)
T ss_dssp             -CHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHH-----HHHH
T ss_pred             -cHHHHHHHHHcCCCCcCCCC-CCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHH-----HHHH
Confidence             89999999999999999998 999999999985432                 56789999999998877     7777


Q ss_pred             HHH
Q psy9492         229 ITE  231 (584)
Q Consensus       229 l~~  231 (584)
                      |.+
T Consensus       178 L~~  180 (183)
T 3deo_A          178 LEG  180 (183)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=1.2e-23  Score=217.42  Aligned_cols=177  Identities=15%  Similarity=0.067  Sum_probs=149.2

Q ss_pred             CCcHHHHHHH-cCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHH
Q psy9492          37 TVTLLHWAAI-NNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADP---TLMDSEGSTCIHQAA  112 (584)
Q Consensus        37 g~t~Lh~A~~-~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~t~L~~A~  112 (584)
                      +.++++.|.. .++.+++++++++|.+.        .||||+|++.|+.+++++|+++|++.   +..|..|.||||.|+
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~--------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS--------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCCH--------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCCc--------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            3467778777 47889999999988653        49999999999999999999999833   234567889999999


Q ss_pred             HhCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCccc--ccCCCCCcHHHHHH-HcCCHH
Q psy9492         113 QFGHTRIVAYLVAKGINV---NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI--QDKIHGNVALHWAI-YAKNHV  186 (584)
Q Consensus       113 ~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~--~d~~~g~TpLh~A~-~~g~~~  186 (584)
                      +.|+.+++++|+++|+++   +..+.+ .||||+|+.+| +.+++++|++.|++++.  .|. .|.||||+|+ ..|+.+
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G-~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG-HLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT-CHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC-CHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHH
Confidence            999999999999999762   222333 89999999998 89999999999999987  887 8999999999 999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhcc
Q psy9492         187 AITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHY  236 (584)
Q Consensus       187 ~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~  236 (584)
                      ++++|+++|++       |.||++.|+++|+.+     ++++|.+.....
T Consensus       214 iv~~Ll~~ga~-------~~taL~~Aa~~g~~e-----vv~lL~~~ga~~  251 (376)
T 2aja_A          214 VINFLLDCPVM-------LAYAEIHEFEYGEKY-----VNPFIARHVNRL  251 (376)
T ss_dssp             HHHHHTTSHHH-------HHHHHHCTTTTTTTT-----HHHHHHHHHHHH
T ss_pred             HHHHHHhCCCc-------cchHHHHHHHCCCHH-----HHHHHHhcCccc
Confidence            99999998853       899999999999999     888888754443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=3.4e-22  Score=172.89  Aligned_cols=109  Identities=27%  Similarity=0.387  Sum_probs=54.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHh
Q psy9492          35 SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQF  114 (584)
Q Consensus        35 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~  114 (584)
                      ..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG-GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTT-SSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34445555555555555555555555554443322 45555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy9492         115 GHTRIVAYLVAKGINVNLQDRNGMTALMWS  144 (584)
Q Consensus       115 g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A  144 (584)
                      |+.+++++|+++|++++.+|..|.||||+|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            555555555555555555555555555544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=6.4e-22  Score=171.14  Aligned_cols=112  Identities=26%  Similarity=0.427  Sum_probs=106.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcC
Q psy9492          70 LQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF  149 (584)
Q Consensus        70 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~  149 (584)
                      .|.||||+|+..|+.++++.|+++|++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..+ 
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~-   84 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG-   84 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT-
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAK  183 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g  183 (584)
                      +.+++++|++.|++++..|. .|.||||+|...+
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~  117 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGP-DGLTAFEATDNQA  117 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCCHH
T ss_pred             CHHHHHHHHHcCCCCCCcCC-CCCCHHHHhCCHH
Confidence            89999999999999999998 9999999995433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=3.1e-22  Score=191.94  Aligned_cols=135  Identities=22%  Similarity=0.260  Sum_probs=115.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHH
Q psy9492          33 PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQA  111 (584)
Q Consensus        33 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~t~L~~A  111 (584)
                      .|.+|.||||+|+..|+.++++.|++.|++++..+.. |.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            3567899999999999999999999999999987655 99999999999999999999999 999999999999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccC
Q psy9492         112 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK  169 (584)
Q Consensus       112 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~  169 (584)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..+ ..++++.|++.|+..+..+.
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~-~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA-CASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHH-HHHHHC--------------
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchh-HHHHHHHHhccchhhhccch
Confidence            9999999999999999999999999999999999888 79999999999998876665

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.5e-20  Score=186.72  Aligned_cols=199  Identities=15%  Similarity=0.103  Sum_probs=124.3

Q ss_pred             CCCCCC-----CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Q psy9492          27 GQDVNE-----PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG-ADPTLM  100 (584)
Q Consensus        27 g~d~n~-----~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~~~~  100 (584)
                      |..+..     .|..+.+.++.+...|+..+.+++...-..........+....+    ....-..+++.+.- ......
T Consensus        51 g~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~  126 (278)
T 1dcq_A           51 GVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHAD  126 (278)
T ss_dssp             CTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSS
T ss_pred             CCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccc
Confidence            666653     67788899999999998777766543322211111111112111    11111112222211 111111


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCcHHHHHHhhc--CChhhHHHHHhcCCCcccccCCCC
Q psy9492         101 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN------VNLQDRNGMTALMWSAYKV--FSLDPTRLLITFGASTTIQDKIHG  172 (584)
Q Consensus       101 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~Lh~Aa~~~--~~~~~~~~Ll~~ga~~~~~d~~~g  172 (584)
                      +....++|+.|++.|+.+.+..+++.|.+      ++..|..|.||||+|+..+  ++.+++++|++.|+++|.+|. .|
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-~g  205 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KG  205 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-TC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-CC
Confidence            22234677777777777777777777777      3344667777777777762  267777777777777777776 77


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         173 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       173 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      +||||+|+..|+.+++++|+++|+|++.+|.+|.|||++|+..++.+     +++.|.+.+..
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~-----~v~~Ll~~ga~  263 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH-----CEELLTQALSG  263 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHH-----HHHHHHHcCCC
Confidence            77777777777777777777777777777777777777777777777     77777765443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1e-20  Score=194.61  Aligned_cols=144  Identities=21%  Similarity=0.197  Sum_probs=118.7

Q ss_pred             CCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhh
Q psy9492          71 QATPLHWATRQ-GHLDSVVLLIQHGADPTLMD--SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK  147 (584)
Q Consensus        71 g~tpLh~A~~~-g~~~~v~~Ll~~gad~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~  147 (584)
                      +.|+||.|+.. |+.++++.|+++|+|++..|  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45799999999 99999999999999999988  8899999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC---CCCCCCCCCCCHHHHHHhcC
Q psy9492         148 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS---SLEIPNAQGLTPFMLLEENI  216 (584)
Q Consensus       148 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~ga---d~~~~n~~g~tpl~lA~~~~  216 (584)
                      | +.+++++|++.|++++..|. .|.||||+|+..|+.+++++|++++.   +....+..+.|+++++....
T Consensus       279 g-~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          279 G-HTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             T-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             C-cHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            8 89999999999999999998 99999999999999999999998763   44566778889988876643

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=9.3e-21  Score=195.00  Aligned_cols=162  Identities=23%  Similarity=0.237  Sum_probs=119.3

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHCCCcccccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy9492          35 SETVTLLHWAAIN-NRIEIMKYFISQGAIVDAIGG-DLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAA  112 (584)
Q Consensus        35 ~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~  112 (584)
                      ..+.|+||.|+.. |+.++++.|+++|++++..+. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456899999999 999999999999999998762 45999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCC---cccccCCCCCcHHHHHHHcCC--HHH
Q psy9492         113 QFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAS---TTIQDKIHGNVALHWAIYAKN--HVA  187 (584)
Q Consensus       113 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~---~~~~d~~~g~TpLh~A~~~g~--~~~  187 (584)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|+..+..   ....+. .+.|+++.+.....  .+.
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g-~~~iv~lLl~~~~~~~~~~~~~~-~~~t~l~i~~~~~~~~~~~  354 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA-NADIVTLLRLAKMREAEAAQGQA-GDETYLDIFRDFSLMASDD  354 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHHC------------------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCC-CHHHHHHHHHcCCCcccccccCC-CCCCHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999999999988 89999999987633   333344 78889887776542  223


Q ss_pred             HHHHHhcCCCC
Q psy9492         188 ITTLVSHTSSL  198 (584)
Q Consensus       188 v~~Ll~~gad~  198 (584)
                      .+.|...+.++
T Consensus       355 ~ekl~r~~~~~  365 (368)
T 3jue_A          355 PEKLSRRSHDL  365 (368)
T ss_dssp             -----------
T ss_pred             HHHHHhcCCCc
Confidence            44455555444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=2.7e-19  Score=177.66  Aligned_cols=126  Identities=23%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9492          72 ATPLHWATRQGHLDSVVLLIQHGADPT------LMDSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTALM  142 (584)
Q Consensus        72 ~tpLh~A~~~g~~~~v~~Ll~~gad~~------~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh  142 (584)
                      .++|+.|+..|+.+.++.+++.|++++      ..|..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            368999999999999999999999954      4488899999999999   8999999999999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy9492         143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE  199 (584)
Q Consensus       143 ~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  199 (584)
                      +|+..| +.+++++|++.|++++.+|. .|.||||+|+..|+.+++++|+++|++..
T Consensus       211 ~A~~~g-~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          211 YCCLTD-NAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHcC-CHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999998 89999999999999999998 99999999999999999999999998643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.2e-19  Score=148.53  Aligned_cols=91  Identities=43%  Similarity=0.635  Sum_probs=44.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-H   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-C
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-C
Confidence            445555555555555555555555555555555555555555555555555555554444444444444444444444 3


Q ss_pred             hhhHHHHHhcCC
Q psy9492         151 LDPTRLLITFGA  162 (584)
Q Consensus       151 ~~~~~~Ll~~ga  162 (584)
                      .+++++|++.|+
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            444444444443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.7e-19  Score=147.65  Aligned_cols=93  Identities=41%  Similarity=0.585  Sum_probs=87.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                      +|.||||+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            4899999999999999999999999999987765 999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCC
Q psy9492         116 HTRIVAYLVAKGIN  129 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~  129 (584)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=3.8e-20  Score=157.84  Aligned_cols=107  Identities=26%  Similarity=0.339  Sum_probs=72.9

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHH
Q psy9492         100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWA  179 (584)
Q Consensus       100 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A  179 (584)
                      +|..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..+ +.+++++|++.|++++..|. .|.||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~d~-~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG-HAEIVKLLLAKGADVNARSK-DGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTT-CHHHHHHHTTTTCCTTCCCT-TCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHHcCCCCcccCC-CCCCHHHHH
Confidence            4666666666666666666666666666666666666677777666665 56667777777777766666 677777777


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy9492         180 IYAKNHVAITTLVSHTSSLEIPNAQGLTP  208 (584)
Q Consensus       180 ~~~g~~~~v~~Ll~~gad~~~~n~~g~tp  208 (584)
                      +..|+.+++++|+++|+|++.++..|.||
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            77777777777777777777777777665

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=8.2e-20  Score=155.72  Aligned_cols=108  Identities=38%  Similarity=0.448  Sum_probs=73.3

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy9492          32 EPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA  111 (584)
Q Consensus        32 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A  111 (584)
                      .+|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSS-SCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            35666777777777777777777777777766655433 66777777777777777777777777777777777777777


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy9492         112 AQFGHTRIVAYLVAKGINVNLQDRNGMTA  140 (584)
Q Consensus       112 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~  140 (584)
                      ++.++.+++++|+++|++++.++..|.||
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            77777777777777777776666666665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=9.5e-17  Score=135.61  Aligned_cols=92  Identities=30%  Similarity=0.373  Sum_probs=65.7

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHH
Q psy9492          31 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQ  110 (584)
Q Consensus        31 n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~  110 (584)
                      +..|.+|.|+||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~-g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            445667777777777777777777777777777766543 7777777777777777777777777777777777777777


Q ss_pred             HHHhCCHHHHHHH
Q psy9492         111 AAQFGHTRIVAYL  123 (584)
Q Consensus       111 A~~~g~~~~v~~L  123 (584)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            7777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=2.2e-16  Score=133.31  Aligned_cols=85  Identities=35%  Similarity=0.417  Sum_probs=39.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFS  150 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~  150 (584)
                      |.||||+|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +
T Consensus        24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~-~  102 (110)
T 2zgd_A           24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG-N  102 (110)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-C
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC-C
Confidence            444444444444444444444444444444444444444444444444444444444444444444444444444443 3


Q ss_pred             hhhHHH
Q psy9492         151 LDPTRL  156 (584)
Q Consensus       151 ~~~~~~  156 (584)
                      .+++++
T Consensus       103 ~~~~~~  108 (110)
T 2zgd_A          103 EDLAEI  108 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	584
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.004
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 7e-27
 Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 36/225 (16%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V   ++ G   N  + +  T LH AA     E+ KY +   A V+A   D Q TPLH A 
Sbjct: 16  VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAA 74

Query: 80  RQGHLDSVVLLIQHGADP---------------------------------TLMDSEGST 106
           R GH + V LL+++ A+P                                   M  +G T
Sbjct: 75  RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT 134

Query: 107 CIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 166
            +H AA++G  R+   L+ +  + N   +NG+T L  + +   +LD  +LL+  G S   
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-NLDIVKLLLPRGGSPHS 193

Query: 167 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFML 211
               +G   LH A          +L+ +  S    + QG+TP  L
Sbjct: 194 PAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 237

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-26
 Identities = 47/206 (22%), Positives = 74/206 (35%), Gaps = 36/206 (17%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH A+    + I+K  + +GA  +     ++ TPLH A R GH +    L+Q+ A   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAK-------------------------------- 126
               +  T +H AA+ GHT +V  L+                                  
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 127 -GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 185
              +     + G T L  +A     +    LL+   A      K +G   LH A++  N 
Sbjct: 121 KEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNL 178

Query: 186 VAITTLVSHTSSLEIPNAQGLTPFML 211
             +  L+    S   P   G TP  +
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 5e-22
 Identities = 48/255 (18%), Positives = 82/255 (32%), Gaps = 35/255 (13%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQA----------- 72
           ++    VN    +  T LH AA      ++K  +   A  +                   
Sbjct: 53  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 73  ---------------------TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA 111
                                TPLH A + G +    LL++  A P      G T +H A
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 172

Query: 112 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIH 171
               +  IV  L+ +G + +    NG T L  +A +        LL      +   + + 
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG--GSANAESVQ 230

Query: 172 GNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE 231
           G   LH A    +   +  L+S  ++  + N  GLTP  L+ +  G   +    +     
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVM 289

Query: 232 LKDHYNTQQNIIHRF 246
           +          +H  
Sbjct: 290 VDATTRMGYTPLHVA 304

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 1e-20
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 5/153 (3%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V   +    + N  +   +T LH  A    + +    I  G +VDA       TPLH A+
Sbjct: 247 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVAS 305

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
             G++  V  L+QH AD       G + +HQAAQ GHT IV  L+  G + N    +G T
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 365

Query: 140 ALMWSAYKVFSLDPTRLLITF---GASTTIQDK 169
            L  +      +  T +L       +   + DK
Sbjct: 366 PLAIAKRL-GYISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 2e-20
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 3/210 (1%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
                   +    E     V   +E          +  T LH AA   ++ + +  + + 
Sbjct: 96  TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 155

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           A  +A G +   TPLH A    +LD V LL+  G  P      G T +H AA+     + 
Sbjct: 156 AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 214

Query: 121 AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
             L+  G + N +   G+T L  +A +    +   LL++  A+  + +K  G   LH   
Sbjct: 215 RSLLQYGGSANAESVQGVTPLHLAAQEGH-AEMVALLLSKQANGNLGNK-SGLTPLHLVA 272

Query: 181 YAKNHVAITTLVSHTSSLEIPNAQGLTPFM 210
              +      L+ H   ++     G TP  
Sbjct: 273 QEGHVPVADVLIKHGVMVDATTRMGYTPLH 302

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 2e-20
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 3/196 (1%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V   +  G   + P     T LH AA  N++E+ +  +  G   +A       TPLH A 
Sbjct: 181 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-VQGVTPLHLAA 239

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMT 139
           ++GH + V LL+   A+  L +  G T +H  AQ GH  +   L+  G+ V+   R G T
Sbjct: 240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

Query: 140 ALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLE 199
            L  +     ++   + L+   A    + K  G   LH A    +   +T L+ + +S  
Sbjct: 300 PLHVA-SHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPN 357

Query: 200 IPNAQGLTPFMLLEEN 215
             ++ G TP  + +  
Sbjct: 358 EVSSDGTTPLAIAKRL 373

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
                   +          V   ++   DVN       + LH AA     +I+   +  G
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLL---IQHGADPTLMDSEGST 106
           A  + +  D   TPL  A R G++    +L       +   + D    +
Sbjct: 354 ASPNEVSSDGT-TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 138 MTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS 197
           +T L  +++    L   + L+  GAS  + +       LH A  A +      L+ + + 
Sbjct: 1   LTPLHVASFMG-HLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 198 LEIPNAQGLTPFML 211
           +        TP   
Sbjct: 59  VNAKAKDDQTPLHC 72

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 4e-21
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 28  QDVNEPDSETVTLLHWAAINNRIEIMKYFISQ-GAIVDAI---GGDLQATPLHWATRQGH 83
           +D         T L  AA    +E++K  + + GA V+A    G +     L  +     
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 84  LDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALM 142
                LL+ HGAD  +    G T +  A +  H  +V  L+ +  I +N  D +G TAL+
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKI 170
            +           LL   GAST   D +
Sbjct: 259 LAVEL-KLKKIAELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 5e-19
 Identities = 46/216 (21%), Positives = 78/216 (36%), Gaps = 15/216 (6%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
            ++            +   +   +  G DVNE D    T    AA+  +++ +K+   +G
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 61  AIVDAIGGDLQ---------ATPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQ 110
           A V+      +         AT L  A  +GH++ + +L+   GAD    D+ G   +  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 111 A----AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI 166
           A           I   L+  G +VN++   G T L+ +  K       RLL         
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 167 QDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 202
            D   G  AL  A+  K       L    +S +  +
Sbjct: 249 TDS-DGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 2e-17
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 8/164 (4%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
            LL  A  N  +++++  +  GA V+    +   TPLH A +    D V LL++HGADP 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVF--------S 150
           L    G+T    AA  G  +++   ++KG +VN  D  G TA M +A             
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 151 LDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
                 L         + +  G  AL  A    +   +  L+  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYK 147
           E +  + +A Q     +V  L+  G NVN Q+   G T L  +   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 89.2 bits (220), Expect = 7e-20
 Identities = 29/241 (12%), Positives = 60/241 (24%), Gaps = 28/241 (11%)

Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA----IGGDLQA------TPLHWA 78
            +     +    +      N  ++ +      A  +     +  D              A
Sbjct: 38  SLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVA 97

Query: 79  TRQGHLDS---VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDR 135
              G   +   + LL+       ++ +E       AA+ GH  ++  L        +   
Sbjct: 98  AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 157

Query: 136 N--GMTALMWSAYKVFSLDPTRLLITFGAS--TTIQDKIHGNVALHWAIYAKNHVAITTL 191
                 A   +A     L     L     +  T +    +       A+   +H  I  L
Sbjct: 158 QAENYHAFRLAAENGH-LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 216

Query: 192 VSHTSSLEIP-------NAQGLTPFMLLEENI---GAPWLGKATVDKITELKDHYNTQQN 241
           +     L            + + PF+    N           +  D + +L       Q 
Sbjct: 217 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG 276

Query: 242 I 242
            
Sbjct: 277 F 277

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 85.7 bits (211), Expect = 8e-19
 Identities = 24/164 (14%), Positives = 46/164 (28%), Gaps = 9/164 (5%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYF---ISQGAIVDAIGGDLQATPLHWATR 80
            +   D ++   ++  +   AAI      +      ++   IV  I  +        A  
Sbjct: 77  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAE 135

Query: 81  QGHLDSVVLLIQHGADPTLMD--SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM 138
            GHL  +  L +      +    +E       AA+ GH  ++  L               
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 139 --TALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
              A  W+A      +    L+         + IH        +
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-IHEFEYGEKYV 238

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 85.7 bits (211), Expect = 1e-18
 Identities = 29/240 (12%), Positives = 54/240 (22%), Gaps = 62/240 (25%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQ-ATPLHWATRQG 82
           + + + V    +E       AA N  + ++                 +       A   G
Sbjct: 113 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG 172

Query: 83  HLDSVVLLIQHGADPTLM---DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN--- 136
           HL  +  L +                     A   GH  ++ +L+   + +   + +   
Sbjct: 173 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE 232

Query: 137 -------------------GMTALMWSAYKVF--------------------------SL 151
                                 A   S                                L
Sbjct: 233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL 292

Query: 152 DPTRLLITFGASTTIQDKIH----GNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLT 207
           D  R L++      +          N  L  A+    +     L+     L IP+   LT
Sbjct: 293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALR-LGNQGACALL-----LSIPSVLALT 346

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.1 bits (173), Expect = 6e-14
 Identities = 22/197 (11%), Positives = 45/197 (22%), Gaps = 19/197 (9%)

Query: 40  LLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 99
           L+ W    N   + ++FIS   +        +A  +     +       LL  + A    
Sbjct: 18  LIPWILWEN---LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR 74

Query: 100 MDSEGSTCIHQAAQFGHT--------------RIVAYLVAKGINVNLQDRNGMTALMWSA 145
              +  +  H+                       +  L+     V +       A   +A
Sbjct: 75  NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 134

Query: 146 YKVFSLDPTRLLITFGASTTIQDK-IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ 204
                L     L     +  +         A   A    +   +  L     +      Q
Sbjct: 135 ENGH-LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193

Query: 205 GLTPFMLLEENIGAPWL 221
               +      +G    
Sbjct: 194 AENYYAFRWAAVGRGHH 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 3e-19
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 25  EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL 84
                    D ++ T LHWA      EI+++ +  G  V+        +PLH A   G  
Sbjct: 25  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRD 83

Query: 85  DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWS 144
           + V  L+  GA    ++  G T +H AA      I   L+  G N + +D    TA+  +
Sbjct: 84  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 143

Query: 145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQ 204
           A K   L    +L+ + AST IQD   GN  LH A   +       LVS  +S+ I N +
Sbjct: 144 AAKGN-LKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIENKE 201

Query: 205 GLTPFMLLEEN 215
             TP  + +  
Sbjct: 202 EKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 2e-18
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 1/146 (0%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
            +      +          V   +  G  VN  +    T LH+AA  NR EI    +  G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           A  DA     +AT +H A  +G+L  + +L+ + A   + D+EG+T +H A         
Sbjct: 127 ANPDAKDHY-EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 185

Query: 121 AYLVAKGINVNLQDRNGMTALMWSAY 146
             LV++G ++ ++++   T L  +  
Sbjct: 186 KLLVSQGASIYIENKEEKTPLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 18/149 (12%), Positives = 38/149 (25%), Gaps = 34/149 (22%)

Query: 105 STCIHQAAQFGHTRIVA-YLVAKGINVNLQDRNGMTALMWSAYKVFSLDP---------- 153
           +  +   A  G    +   ++A        D++  TAL W+     +             
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 154 ----------------------TRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL 191
                                  + L+  GA     ++ +G   LH+A     H     L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVML 122

Query: 192 VSHTSSLEIPNAQGLTPFMLLEENIGAPW 220
           +   ++ +  +    T             
Sbjct: 123 LEGGANPDAKDHYEATAMHRAAAKGNLKM 151

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.5 bits (210), Expect = 6e-19
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 28/209 (13%)

Query: 25  EAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH 83
               ++N P D    T LHW      +E++K+ +  G+         + + L  A +  +
Sbjct: 94  NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE-SCLVKAVKSVN 152

Query: 84  L-------DSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR------------IVAYLV 124
                     +  L          DS   T +H                     ++ ++V
Sbjct: 153 NYDSGTFEALLDYLYPCLILE---DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 209

Query: 125 AKG-INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI--QDKIHGNVALHWAIY 181
            K    +        +       +        L + +  +  +  QD  +G+  L+ A  
Sbjct: 210 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAAR 268

Query: 182 AKNHVAITTLVSHTSSLEIPNAQGLTPFM 210
             N   +  L+ + +   I N  GL P  
Sbjct: 269 LGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.5 bits (197), Expect = 3e-17
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 18  VFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIE------------IMKYFISQGAIVDA 65
            F          +   DS   T+LH   I + +             +M + + +      
Sbjct: 158 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 217

Query: 66  IGGDLQATPLHWATRQGHLDSVVLLIQH---GADPTLMDSEGSTCIHQAAQFGHTRIVAY 122
            G + + +  +    +     +  L             DS G TC++ AA+ G+  IV  
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 123 LVAKGINVNLQDRNGMTALMWSA 145
           L+  G +  + +++G+  + + A
Sbjct: 278 LLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 29/180 (16%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRI-------EIMKYFISQGAIVDAIGGDLQATPLH 76
           V+ G +    D+   + L  A  +           ++ Y      + D++      T LH
Sbjct: 127 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM----NRTILH 182

Query: 77  WATRQGHLDS------------VVLLIQHGADPT-LMDSEGSTCIHQAAQFGHTRIVAYL 123
                  +              +  +++    P     +E  +  +         I+  L
Sbjct: 183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

Query: 124 VAK---GINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
             K      +N QD NG T L  +A    ++     L+ +GA   I +K  G   + +  
Sbjct: 243 DLKWIIANMLNAQDSNGDTCLNIAARL-GNISIVDALLDYGADPFIANK-SGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (182), Expect = 3e-15
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 18/198 (9%)

Query: 32  EPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI 91
           E  S      H +  +   E+   F +    ++    +   TPLHW T   +L+ V  L+
Sbjct: 68  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127

Query: 92  QHGADPTLMDSEGSTCIHQAAQFGHTR----IVAYLVAKGINVNLQDRNGMTAL------ 141
           +HG++    D+ G +C+ +A +  +        A L      + L+D    T L      
Sbjct: 128 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 187

Query: 142 -----MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS 196
                  +A K +       ++                  +     +    +  L     
Sbjct: 188 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 247

Query: 197 SLEIPNAQ---GLTPFML 211
              + NAQ   G T   +
Sbjct: 248 IANMLNAQDSNGDTCLNI 265

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.1 bits (183), Expect = 2e-15
 Identities = 25/110 (22%), Positives = 44/110 (40%)

Query: 42  HWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD 101
                   +   + +++ G I D        T LH A  +G+ + + LLIQ   D  + D
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229

Query: 102 SEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL 151
            +G T +H AA +G       LV    ++   ++ G TA   +   +   
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.3 bits (147), Expect = 6e-11
 Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 43/252 (17%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
           V + +E G D+N  + + +T LH A I++ ++++K+ +  GA ++    +    PLH A 
Sbjct: 56  VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAA 114

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT---------------------- 117
             G+LD    LI  GA    ++SEG T +  A +                          
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174

Query: 118 -----RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHG 172
                    +L +  IN     ++G TAL  +A K    +  +LLI       I+D   G
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDVNIKDY-DG 232

Query: 173 NVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL 232
              LH A +     A   LV +   +E  N  G T F + +E+I         +  + EL
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI---------LGYLEEL 283

Query: 233 KDHYNTQQNIIH 244
           +     +QN++H
Sbjct: 284 Q----KKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
            +   A  +   E +   + +GA ++    D   T LH A    ++D V  L+++GA+  
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGL-TALHQACIDDNVDMVKFLVENGANIN 100

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLI 158
             D+EG   +H AA  G+  I  YL+++G +V   +  G T L  +  +         + 
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 159 TFGASTTIQDK-------------------------IHGNVALHWAIYAKNHVAITTLVS 193
             G       K                           G  ALH A        +  L+ 
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220

Query: 194 HTSSLEIPNAQGLTPFML 211
               + I +  G TP   
Sbjct: 221 ARYDVNIKDYDGWTPLHA 238

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 23/85 (27%), Positives = 36/85 (42%)

Query: 72  ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
                 A   G  + V+ L++ GAD    + +G T +HQA    +  +V +LV  G N+N
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 132 LQDRNGMTALMWSAYKVFSLDPTRL 156
             D  G   L  +A   +      L
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK 147
           +       A   G T  V  L+ +G ++N  + +G+TAL  +   
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.3 bits (173), Expect = 3e-14
 Identities = 24/101 (23%), Positives = 42/101 (41%)

Query: 23  CVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
             +     +    +  T LH+AA  + + I+KY + +         +   TP+  A ++G
Sbjct: 173 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 232

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
            ++ V+ LIQ GA    +D+   T    A    H  IV   
Sbjct: 233 RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 73  TPLHWATRQGHLDSVVLLIQ-HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
           T LH+A +  ++  V  L+   G++    D +G T I  AAQ G   +V YL+ +G +V 
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 248

Query: 132 LQDRNGMTALMWSAYK 147
             D    TA   +   
Sbjct: 249 AVDATDHTARQLAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 16/215 (7%)

Query: 15  LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATP 74
           L      +C+ AG DVN  D +  T L  A +  R  ++ Y +  GA         ++  
Sbjct: 52  LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 111

Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMD--------------SEGSTCIHQAAQFGHTRIV 120
            H A        +V ++        ++                       +A+    +  
Sbjct: 112 -HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 170

Query: 121 AYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
                     + +   G TAL ++A          L+   G++   QD+  G   +  A 
Sbjct: 171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAA 229

Query: 181 YAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEEN 215
                  +  L+   +S+E  +A   T   L + N
Sbjct: 230 QEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
            +    +    +     +      E G + ++ D +  T +  AA   RIE++ Y I QG
Sbjct: 185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 92
           A V+A+      T    A    H + V +  +
Sbjct: 245 ASVEAVDATDH-TARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 30/109 (27%)

Query: 36  ETVTLLHWAAINNRIEIMKYFISQGA-IVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 94
           E+   LH  A  +   I +    +   I+D        T LHW       +    LI H 
Sbjct: 1   ESPIKLHTEAAGS-YAITEPITRESVNIIDPRHNR---TVLHWIASNSSAEKSEDLIVHE 56

Query: 95  ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMW 143
           A                            +A G +VN  D +  T LM 
Sbjct: 57  AK-------------------------ECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 103 EGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAY-------KVFSLDPTR 155
           E    +H  A  G   I   +  + +N+    R+  T L W A        +   +   +
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 156 LLITFGASTTIQDKIHGNVALHWAIY 181
             I  GA     D    N  L  A+ 
Sbjct: 59  ECIAAGADVNAMDC-DENTPLMLAVL 83

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 5e-12
 Identities = 26/108 (24%), Positives = 43/108 (39%)

Query: 20  VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWAT 79
             +  +    +   + +  T LH A I+   E+++     GA ++        TPLH A 
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 80  RQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
                  + LL++ GADPT     G T +  A    +  +   L A G
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 2/149 (1%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
           T LH A I+     + + +   A  + +    DL  T LH A   G   +V  L   GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 97  PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRL 156
             + +  G T +H A +         L+    +      +             S  P  +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 157 LITFGASTTIQDKIHGNVALHWAIYAKNH 185
                     + +         A     H
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGH 159

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 31/213 (14%), Positives = 55/213 (25%), Gaps = 49/213 (23%)

Query: 29  DVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVV 88
            ++  +    T LH AAI      ++   + GA V         T LH A R        
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCAC 95

Query: 89  LLIQHGADPTLMDSEG--------------STCIHQAAQFGHTRIVAYLVAKGINVNLQD 134
           +L+Q         S+               +     +                + +  ++
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 135 RNGMTALMWSAY---------------------------------KVFSLDPTRLLITFG 161
            +G T L  +                                   +  +     LL+  G
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215

Query: 162 ASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
           A  T +    G   L  A+   N +    L +H
Sbjct: 216 ADPTARMY-GGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 1/130 (0%)

Query: 33  PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQ 92
           PD+        +  N   E           ++A   D           +      +L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 93  HGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD 152
                    + G T +H A +     ++  L+  G +   +   G T L  +  +  +  
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPI 239

Query: 153 PTRLLITFGA 162
             RLL   GA
Sbjct: 240 LARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 34/154 (22%), Positives = 48/154 (31%), Gaps = 17/154 (11%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLM---DSEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
           T LH A    H   +  L+   A    +   +  G T +H AA  G    V  L A G  
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK---------IHGNVALHWAI 180
           V + +R G TAL   A +V +     +L+    S                  + +   A 
Sbjct: 71  VLVAERGGHTALHL-ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 181 YA----KNHVAITTLVSHTSSLEIPNAQGLTPFM 210
                   +            LE  N  G TP  
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGAD 96
           T LH A       +++  +  GA   A     + TPL  A  + +     LL  HGA 
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGIN---VNLQDRNGMTALMWSAYKVFSLDPTRLL 157
             +G T +H A    H   + +L+        ++LQ+  G TAL  +A    +    +L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 158 ITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTP 208
                    +   H  +  H A   + H     L+    S     +     
Sbjct: 66  AAGAGVLVAERGGHTAL--HLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 24  VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGA 61
           ++AG D         T L  A +     + +   + GA
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 12/155 (7%)

Query: 34  DSETVTLLHWAAINNRIEIMKYFISQGAIVDA-----IGGDLQATPLHWATR---QGHLD 85
            +  +  L  A     I  +    + G  +        G +   T LH A R   +  L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 86  SVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSA 145
            V  L+Q+  +      +GST +H      +   +  L+    ++ + + +G T L  + 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 146 YKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAI 180
                     LL    +    +   H +V   W +
Sbjct: 123 RL-KHEHCEELLTQALSG---RFNSHVHVEYEWRL 153

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (138), Expect = 4e-10
 Identities = 25/88 (28%), Positives = 39/88 (44%)

Query: 42  HWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD 101
           H A+I+  + I++  +S GA V+A       T LH A    + D V LL++ GAD   + 
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 175

Query: 102 SEGSTCIHQAAQFGHTRIVAYLVAKGIN 129
            +G +          TRI   L    + 
Sbjct: 176 YQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 39  TLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG 94
           + LH A I+       E+++      A ++      Q TPLH A      +    L+  G
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLGAG 62

Query: 95  ADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTA-----LMWSAYKVF 149
            DP L D  G+T +H A + G    V  L       +L      T       +  A    
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPF 209
            L    LL++ GA    Q+  +G  ALH A+  +N   ++ L+   + +     QG +P+
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 182

Query: 210 MLLEEN 215
            L    
Sbjct: 183 QLTWGR 188

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH A      +++   +  GA V+ +      +P      +        L Q   +  
Sbjct: 147 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQLTLENL 205

Query: 99  LMDSE 103
            M  E
Sbjct: 206 QMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 37/187 (19%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 14  ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
            LT   + +       +N  ++   T LH A I N+ EI +  +  G   +         
Sbjct: 16  ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 75

Query: 74  PLHW-----ATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG- 127
                        G L          +     +  G TC+H A+  G+  IV  LV+ G 
Sbjct: 76  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 135

Query: 128 INVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVA 187
                +  NG TAL  +   + + D   LL+  GA         G           +   
Sbjct: 136 DVNAQEPCNGRTALHLA-VDLQNPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRI 193

Query: 188 ITTLVSH 194
              L   
Sbjct: 194 QQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 103 EGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMW 143
           +G + +H A       +   ++         +N Q+    T L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 74  PLHWATRQGHLDSVVLLIQHGADP-TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
            LH A+  G+L  V LL+  GAD        G T +H A    +  +V+ L+  G +VN 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGAS 163
               G +    +  +  S    + L      
Sbjct: 174 VTYQGYSPYQLTWGR-PSTRIQQQLGQLTLE 203

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 5e-10
 Identities = 34/147 (23%), Positives = 60/147 (40%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
                           +  +        D+   + + +T LH A      E ++  + +G
Sbjct: 74  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 133

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           A +DA+      +PL  A     L  V LL+QHGA+       GS+ +H A+  G   +V
Sbjct: 134 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV 193

Query: 121 AYLVAKGINVNLQDRNGMTALMWSAYK 147
             LV  G + +L++ +  T LM +  +
Sbjct: 194 RTLVRSGADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 41  LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
           L  A  NN + +++  +  GA V+A       + LH A+ +G L  V  L++ GAD +L 
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGS-SALHSASGRGLLPLVRTLVRSGADSSLK 206

Query: 101 DSEGSTCIHQAAQFGHTRIV 120
           +    T +  A       I+
Sbjct: 207 NCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 6/206 (2%)

Query: 14  ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQAT 73
                 V    + G++++  ++   T LH A I     +++  ++ GA   A+    Q  
Sbjct: 17  PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 76

Query: 74  PLHWATRQGHLDSVVLLIQHGADPTLMDS----EGSTCIHQAAQFGHTRIVAYLVAKGIN 129
             H A        +  L+   A  TL       +G T +H A        V  L+ +G +
Sbjct: 77  A-HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 135

Query: 130 VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAIT 189
           ++  D     + +  A +  SL   +LL+  G +        G+ ALH A        + 
Sbjct: 136 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVR 194

Query: 190 TLVSHTSSLEIPNAQGLTPFMLLEEN 215
           TLV   +   + N    TP M+    
Sbjct: 195 TLVRSGADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 73  TPLHWATRQGHLDSVVLLI----QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGI 128
           TPLH A  QG+L +V  L+    Q G +  + ++   T +H A       +V  LV  G 
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH 185
           +               A +  S    R L+   A  T+  +      L     A N 
Sbjct: 65  SPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 103 EGSTCIHQAAQFGHTRIVAYLV----AKGINVNLQDRNGMTALMWSAYK 147
           +G T +H A   G+   V  LV      G  +++ +    T L  +   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.7 bits (135), Expect = 9e-10
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
           M               +  V   + A  D+N  D+   T LHWAA  N  E +   +   
Sbjct: 87  MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH 146

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           A  DA     + TPL  A R+G  ++   L+ + A+  + D         A++  H  IV
Sbjct: 147 ANRDAQDDKDE-TPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIV 205

Query: 121 AYL 123
             L
Sbjct: 206 RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.0 bits (128), Expect = 6e-09
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 3/193 (1%)

Query: 24  VEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQG 82
           +  G ++N   D    T LH AA   R +  K  +  GA  ++     +           
Sbjct: 9   LAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADA 68

Query: 83  HLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM 142
                +LL     +      +G+T +  AA+     +V  L+    ++N  D +G TAL 
Sbjct: 69  MGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALH 128

Query: 143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPN 202
           W      +      ++    +            L  A    ++ A   L+ + ++ EI +
Sbjct: 129 W--AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 203 AQGLTPFMLLEEN 215
                P  +  E 
Sbjct: 187 HMDRLPRDVASER 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 1/147 (0%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
                 +      +   VF         ++N    +  T L  AA      +++  I+  
Sbjct: 54  NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 113

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIV 120
           A ++A     + T LHWA    + ++V +L+ H A+    D +  T +  AA+ G     
Sbjct: 114 ADINAADNSGK-TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEAS 172

Query: 121 AYLVAKGINVNLQDRNGMTALMWSAYK 147
             L+    N  + D         ++ +
Sbjct: 173 KALLDNFANREITDHMDRLPRDVASER 199

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 6e-08
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
                   +    +         +E G  V   D      LH AA    +++++     G
Sbjct: 102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 161

Query: 61  AIVDAIGGDLQATPLHWATRQGHLDSVVLLI-QHGADPTLMDSEGSTCIHQAAQFGHTRI 119
                       TPL  A  +GH D+ VLL+ ++GA+  L+D++G+     A    + ++
Sbjct: 162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQV 218

Query: 120 VAYLVAKGIN 129
             + +   ++
Sbjct: 219 KKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 38/209 (18%)

Query: 41  LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
           LH A + N    ++  +     +          PLHW+      +    L+    +  L 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 101 DSEG--------------------------------------STCIHQAAQFGHTRIVAY 122
           D                                          TC+H A       +  +
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 123 LVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYA 182
           L+  G +V ++D+     L  +A          L     ++   QDK       H     
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 183 KNHVAITTLVSHTSSLEIPNAQGLTPFML 211
               A+  +  + +  ++ + +G     +
Sbjct: 184 HGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 4/143 (2%)

Query: 73  TPLHWATRQGHLDSVV-LLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVN 131
            PLH A  +     V  LL    +     D +G   +H +  F    I ++L++K  NVN
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 132 LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAI--- 188
           L D    +            +   +   +            N  +     A         
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 189 TTLVSHTSSLEIPNAQGLTPFML 211
             L+ + +S+ I +     P   
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHR 144

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
           T LH A      E+ ++ I  GA V       Q  PLH A   G L  + LL   G    
Sbjct: 107 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLIELLCGLGKSAV 165

Query: 99  LM-DSEGSTCIHQAAQFGHTRIVAYLVAK-GINVNLQDRNGMTALMWSAYKVFSLDPTRL 156
              D +G T +  A   GH      LV K G   +L D  G  A   +  +       + 
Sbjct: 166 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE----QVKKF 221

Query: 157 LITFGA 162
            +    
Sbjct: 222 FLNNVV 227

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPT 98
            LL  +++    ++++  I +         +   T LH A   GH + V  L+Q G +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 99  LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM---TALMWSAYKVFSLDPTR 155
             DS+G T +H AA   + ++  +LV  G  V     + M           + +    ++
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY-TQCSQ 120

Query: 156 LLITFGA 162
            L     
Sbjct: 121 FLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
             L  ++ +G  D V  +I    DP+L + EG T +H A   GHT IV +LV  G+NVN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKN-HVAITTL 191
            D +G T  +  A    ++   + L+  GA+           A       +  +   +  
Sbjct: 63  ADSDGWTP-LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 3/143 (2%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNL 132
             L  A R G  D V +L+ +GA  T  D  G++ +H AAQ+GH      L+  G++ + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 133 QDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV 192
           + +   T                 ++    +      +    ALHWA    +   +  L+
Sbjct: 63  RTKVDRT--PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 193 SHTSSLEIPNAQGLTPFMLLEEN 215
            + + +   +    T F +  +N
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDN 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 31/140 (22%)

Query: 39  TLLHWAAINNRIEIMKYFISQGAIVDAIG------------------------------- 67
             L  AA   + + ++  ++ GA                                     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 68  GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG 127
             +  TPLH A  +GH + V +L++HGAD    D    T +H A +  H  +V  L+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 128 INVNLQDRNGMTALMWSAYK 147
            +V+ Q +   TA   S   
Sbjct: 124 ADVHTQSKFCKTAFDISIDN 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 75  LHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYL 123
           LHWAT   H + V LLI++GAD         T    +   G+  +   L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 6/155 (3%)

Query: 41  LHWAAINNRIEIMKYFI-SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL 99
           L  AA    ++ ++  +  +    DA+  +            G     + L++ GA P +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDAL--NRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 100 MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT 159
            D+ G++ +H AA+ G    +  LV  G +VN+ D  G   +  +  +  +   + L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 160 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
             +    +D   G   L  A+       +  L  H
Sbjct: 124 --SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 1   MEHWRGVKNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQG 60
                   +          +   VE G DVN PD      +H A       ++ +  ++ 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

Query: 61  AI--VDAIGGDLQATPLHWATRQGHLDSVVLLIQH 93
            +   DA G     TPL  A ++G  D V +L  H
Sbjct: 125 DLHRRDARG----LTPLELALQRGAQDLVDILQGH 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 3/154 (1%)

Query: 41  LHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLM 100
           L  AA    +E +   +     V+A  G  +            +   +  +  GA+P L 
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRL--LLRGANPDLK 62

Query: 101 DSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF 160
           D  G   IH AA+ G    +  L+    +VN++D  G   L  +A +        L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 161 GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH 194
            ++   ++   G+ A   A     +  ++ + ++
Sbjct: 123 ASNVGHRNH-KGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 8/44 (18%), Positives = 16/44 (36%)

Query: 73  TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGH 116
             L  A  +G L+ +  L+Q+  +    +  G T +        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	584
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.74

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-35  Score=277.77  Aligned_cols=211  Identities=26%  Similarity=0.337  Sum_probs=192.5

Q ss_pred             hhhhhhHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy9492          11 YEFELTKVFVGKCV-EAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVL   89 (584)
Q Consensus        11 ~~~~~~~~~l~~ll-~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~   89 (584)
                      ...+...+.++.++ +.+.+++.+|.+|+||||+|+..|+.++++++++.+.+....... +.++++.|+..|+.++++.
T Consensus        10 ~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~   88 (223)
T d1uoha_          10 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDEIVKA   88 (223)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT-CCCHHHHHHHHTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccc-ccccccccccccccchhHH
Confidence            34556656676665 468899999999999999999999999999999999887766654 8899999999999999999


Q ss_pred             HHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccC
Q psy9492          90 LIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK  169 (584)
Q Consensus        90 Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~  169 (584)
                      |+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+ ..+++++|.+.|.+++.+|.
T Consensus        89 Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~-~~~~~~~L~~~~~~i~~~d~  167 (223)
T d1uoha_          89 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG-NLKMIHILLYYKASTNIQDT  167 (223)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCT
T ss_pred             HhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcC-CcchhhhhccccceeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999988 78999999999999999998


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHH
Q psy9492         170 IHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKIT  230 (584)
Q Consensus       170 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~  230 (584)
                       .|+||||.|+..|+.+++++|+++|||++.+|..|+||+++|. .++.+     +++.|.
T Consensus       168 -~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~-----i~~~Ll  221 (223)
T d1uoha_         168 -EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGL-----ILKRMV  221 (223)
T ss_dssp             -TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHH-----HHHHHH
T ss_pred             -CCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHH-----HHhccc
Confidence             9999999999999999999999999999999999999999984 45554     555553

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-34  Score=278.83  Aligned_cols=198  Identities=20%  Similarity=0.213  Sum_probs=178.3

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccc--cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHH
Q psy9492          31 NEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDA--IGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCI  108 (584)
Q Consensus        31 n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L  108 (584)
                      +..|++|.||||+||.+|+.+++++|+++|++++.  ..+..|.||||+|+..|+.+++++|+++|++++.+|.+|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            56789999999999999999999999999887443  2234599999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHCC-----------------------------------------------CCCCCCCCCCCcHH
Q psy9492         109 HQAAQFGHTRIVAYLVAKG-----------------------------------------------INVNLQDRNGMTAL  141 (584)
Q Consensus       109 ~~A~~~g~~~~v~~Ll~~g-----------------------------------------------~~~~~~d~~g~t~L  141 (584)
                      |+|+..++.+++++|++.+                                               .+++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            9999999999999886532                                               22355788899999


Q ss_pred             HHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccc
Q psy9492         142 MWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWL  221 (584)
Q Consensus       142 h~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l  221 (584)
                      |+|+..+ +.+++++|++.+++.+..+...|.||||+|++.|+.+++++|+++|+|++.+|..|+|||++|+..++.+  
T Consensus       163 h~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~--  239 (255)
T d1oy3d_         163 HVAVIHK-DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI--  239 (255)
T ss_dssp             HHHHHTT-CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH--
T ss_pred             ccccccc-ccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH--
Confidence            9999988 8999999999999999776558999999999999999999999999999999999999999999999998  


Q ss_pred             hHHHHHHHHHHHh
Q psy9492         222 GKATVDKITELKD  234 (584)
Q Consensus       222 ~~~~~~~l~~~~~  234 (584)
                         +++.|.+.++
T Consensus       240 ---i~~~Ll~~Ga  249 (255)
T d1oy3d_         240 ---LARLLRAHGA  249 (255)
T ss_dssp             ---HHHHHHHTTC
T ss_pred             ---HHHHHHHcCC
Confidence               9999987544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.5e-31  Score=261.99  Aligned_cols=212  Identities=28%  Similarity=0.326  Sum_probs=190.2

Q ss_pred             hhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          12 EFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        12 ~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      ......++++.|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+++|.+.+..... +.+||+.|+..|+.++++.|+
T Consensus        48 ~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~-~~~~L~~a~~~~~~~~~~~l~  126 (291)
T d1s70b_          48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLI  126 (291)
T ss_dssp             HHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccc-ccccccccccccccchhhccc
Confidence            3445778999999999999999999999999999999999999999999998776554 899999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-C--------------------------CCCCCCCCCCCcHHHHH
Q psy9492          92 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAK-G--------------------------INVNLQDRNGMTALMWS  144 (584)
Q Consensus        92 ~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g--------------------------~~~~~~d~~g~t~Lh~A  144 (584)
                      ++|++.+..|..+.+++++|+..++.+.++.++.. |                          .+....+..|.||||.|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a  206 (291)
T d1s70b_         127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA  206 (291)
T ss_dssp             HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHH
T ss_pred             ccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHH
Confidence            99999999999999999999999888888777643 2                          33456778899999999


Q ss_pred             HhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHH
Q psy9492         145 AYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKA  224 (584)
Q Consensus       145 a~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~  224 (584)
                      +..| +.++++.|++.|+++|.+|. .|+||||+|+..|+.++|++|+++|||++.+|..|+|||++|++    +     
T Consensus       207 ~~~~-~~~~~~~Ll~~g~din~~~~-~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~-----  275 (291)
T d1s70b_         207 AAKG-YTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----D-----  275 (291)
T ss_dssp             HHHT-CHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----G-----
T ss_pred             HHcC-Chhhhcccccceeccccccc-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----H-----
Confidence            9998 89999999999999999998 99999999999999999999999999999999999999999975    3     


Q ss_pred             HHHHHHHHHhc
Q psy9492         225 TVDKITELKDH  235 (584)
Q Consensus       225 ~~~~l~~~~~~  235 (584)
                      +++.|.++..+
T Consensus       276 ~~~~L~~~~~~  286 (291)
T d1s70b_         276 ILGYLEELQKK  286 (291)
T ss_dssp             GGHHHHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            56677665443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=253.84  Aligned_cols=188  Identities=21%  Similarity=0.186  Sum_probs=169.2

Q ss_pred             ccchhhhhhhHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCC
Q psy9492           7 VKNWYEFELTKVFVGKCVEAGQD---VNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGH   83 (584)
Q Consensus         7 ~~~~~~~~~~~~~l~~ll~~g~d---~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~   83 (584)
                      ..+.+......++++.|++.|++   +|.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+
T Consensus        12 ~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~-g~tpL~~A~~~~~   90 (255)
T d1oy3d_          12 ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRA   90 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT-SCCHHHHHTTTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccc-cchhhhhhhccCc
Confidence            34555666788999999999988   6788899999999999999999999999999999987655 9999999999999


Q ss_pred             HHHHHHHHHCC-----------------------------------------------CCCCCCCCCCChHHHHHHHhCC
Q psy9492          84 LDSVVLLIQHG-----------------------------------------------ADPTLMDSEGSTCIHQAAQFGH  116 (584)
Q Consensus        84 ~~~v~~Ll~~g-----------------------------------------------ad~~~~d~~g~t~L~~A~~~g~  116 (584)
                      .++++.|++.+                                               .+++.+|..|.||||.|++.++
T Consensus        91 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~  170 (255)
T d1oy3d_          91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD  170 (255)
T ss_dssp             HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccc
Confidence            99999987532                                               1234567889999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC-CCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         117 TRIVAYLVAKGINVNLQ-DRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       117 ~~~v~~Ll~~g~~~~~~-d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      .+++++|++.+++.+.. +..|.||||+|+..+ +.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|
T Consensus       171 ~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~-~~~~v~~Ll~~gadin~~d~-~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ-AASVLELLLKAGADPTARMY-GGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             cccccchhccccccccccccccccccccccccc-HHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999988754 567999999999988 89999999999999999998 9999999999999999999999999


Q ss_pred             CC
Q psy9492         196 SS  197 (584)
Q Consensus       196 ad  197 (584)
                      |+
T Consensus       249 a~  250 (255)
T d1oy3d_         249 AP  250 (255)
T ss_dssp             CC
T ss_pred             CC
Confidence            97

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.6e-31  Score=260.37  Aligned_cols=203  Identities=24%  Similarity=0.319  Sum_probs=172.4

Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH--------HHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy9492          20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYF--------ISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLI   91 (584)
Q Consensus        20 l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~L--------l~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll   91 (584)
                      .+.|.+.++++... .+|.||||+||.+|+.++++.|        +++|+++|.++.. |.||||+|+..|+.+++++|+
T Consensus        17 ~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~-G~TpLh~A~~~g~~~iv~~Ll   94 (277)
T d2fo1e1          17 TEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-ENTPLMLAVLARRRRLVAYLM   94 (277)
T ss_dssp             CSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCC-CCeeecccccccccccccccc
Confidence            34444556554432 4699999999999999988776        5679999988654 999999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC--------------------------------------------
Q psy9492          92 QHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKG--------------------------------------------  127 (584)
Q Consensus        92 ~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--------------------------------------------  127 (584)
                      ++|+|++.+|.+|.||++.|+..++.++...+...+                                            
T Consensus        95 ~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (277)
T d2fo1e1          95 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  174 (277)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             ccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccc
Confidence            999999999999999999999999988877764321                                            


Q ss_pred             ---CCCCCCCCCCCcHHHHHHhhcCChhhHHH-HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy9492         128 ---INVNLQDRNGMTALMWSAYKVFSLDPTRL-LITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA  203 (584)
Q Consensus       128 ---~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~-Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~  203 (584)
                         ...+..+..|.||||+++..+ +.+.+++ +...+.+.+.+|. .|.||||+|+..|+.+++++|+++|+|++.+|.
T Consensus       175 ~~~~~~~~~~~~g~t~L~~~~~~~-~~~~~~~~l~~~~~~~~~~d~-~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~  252 (277)
T d2fo1e1         175 DGAARKDSEKYKGRTALHYAAQVS-NMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  252 (277)
T ss_dssp             CSGGGTSSSSCCCCCTHHHHHSSC-CHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             cccccccccccCCCCccccccccc-cccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCC
Confidence               112345567899999999888 6777765 5567889999998 999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         204 QGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       204 ~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      .|+|||++|+++++.+     +++.|.+
T Consensus       253 ~G~T~L~~A~~~~~~~-----iv~lL~~  275 (277)
T d2fo1e1         253 TDHTARQLAQANNHHN-----IVDIFDR  275 (277)
T ss_dssp             SSCCHHHHHHHTTCHH-----HHHHHHT
T ss_pred             CCCCHHHHHHHcCCHH-----HHHHHHH
Confidence            9999999999999998     8888754

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-31  Score=250.64  Aligned_cols=190  Identities=25%  Similarity=0.324  Sum_probs=168.7

Q ss_pred             CCCcHHHHHHHcCCH----HHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy9492          36 ETVTLLHWAAINNRI----EIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQA  111 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A  111 (584)
                      +|.||||+|+..|+.    ++++.+...|+++|..+.. |+||||+|+..|+.+++++|+++|+|++.+|..|.||++.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~-g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT-CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCC-CCccccccccccccccccccccccccccccccccccccccc
Confidence            699999999999985    4455666789999987664 99999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q psy9492         112 AQFGHTRIVAYLVAKGINVN------LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  185 (584)
Q Consensus       112 ~~~g~~~~v~~Ll~~g~~~~------~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~  185 (584)
                      +..++.++++.|++.+.+..      .....|.||||.|+..+ ..+.+++|+..|+.++..++.+|+||||.|+..|+.
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcC-ChhheeeecccCcccccccccCCCCccccccccccH
Confidence            99999999999999875533      34556899999999988 899999999999999988876899999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHH
Q psy9492         186 VAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       186 ~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~  232 (584)
                      +++++|+++|+|++.+|.+|+||+++|++.++.+     +++.|.+.
T Consensus       159 ~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~-----~~~~l~~~  200 (221)
T d1iknd_         159 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR-----IQQQLGQL  200 (221)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH-----HHHHHHTT
T ss_pred             HHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHH-----HHHHHHHc
Confidence            9999999999999999999999999999999888     88887663

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-29  Score=260.96  Aligned_cols=216  Identities=24%  Similarity=0.300  Sum_probs=197.4

Q ss_pred             hhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccC---------------------------
Q psy9492          15 LTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG---------------------------   67 (584)
Q Consensus        15 ~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~---------------------------   67 (584)
                      ...++++.|++.|.+++..+.+|.+|||.|+..|+.+++++|+++|++++..+                           
T Consensus       143 ~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~  222 (408)
T d1n11a_         143 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG  222 (408)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccc
Confidence            35678999999999999999999999999999999999999999998876432                           


Q ss_pred             -----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy9492          68 -----GDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALM  142 (584)
Q Consensus        68 -----~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh  142 (584)
                           +..|.||||.|+..++.++++.+.+.+.+.+..|..|.||++.|++.++.+++++|+++|++++..+..+.||||
T Consensus       223 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~  302 (408)
T d1n11a_         223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH  302 (408)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHH
T ss_pred             cccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccch
Confidence                 223678888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccch
Q psy9492         143 WSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLG  222 (584)
Q Consensus       143 ~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~  222 (584)
                      .++..+ ..++++.+++.|+++|.+|. .|+||||.|++.|+.++|++|+++|||++.+|.+|+|||++|++.++.+   
T Consensus       303 ~~~~~~-~~~~~~~ll~~g~~in~~d~-~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~---  377 (408)
T d1n11a_         303 VASHYG-NIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS---  377 (408)
T ss_dssp             HHHHSS-CSHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHH---
T ss_pred             hhcccC-cceeeeeeccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH---
Confidence            999888 78999999999999999998 9999999999999999999999999999999999999999999999998   


Q ss_pred             HHHHHHHHHHHhccc
Q psy9492         223 KATVDKITELKDHYN  237 (584)
Q Consensus       223 ~~~~~~l~~~~~~~~  237 (584)
                        +++.|..+.+...
T Consensus       378 --iv~~L~~~~~~~~  390 (408)
T d1n11a_         378 --VTDVLKVVTDETS  390 (408)
T ss_dssp             --HHHHHHHHCCCCS
T ss_pred             --HHHHHHHHHhccc
Confidence              8998876555443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-29  Score=241.86  Aligned_cols=213  Identities=22%  Similarity=0.249  Sum_probs=189.2

Q ss_pred             chhhhhhhHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCccccc--CCCCCCcHHHHHHHcCCHH
Q psy9492           9 NWYEFELTKVFVGKCVE-AGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAI--GGDLQATPLHWATRQGHLD   85 (584)
Q Consensus         9 ~~~~~~~~~~~l~~ll~-~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~g~tpLh~A~~~g~~~   85 (584)
                      +++......+.++.|++ .+.+++.+|.+|.||||+|+..|+.+++++|+++|++++..  .+..|.+|+|+|+..+..+
T Consensus         5 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (229)
T d1ixva_           5 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE   84 (229)
T ss_dssp             HHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccc
Confidence            34445556788888887 47899999999999999999999999999999999988643  3456899999999999999


Q ss_pred             HHHHHHHCCCCC--CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcC-C
Q psy9492          86 SVVLLIQHGADP--TLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFG-A  162 (584)
Q Consensus        86 ~v~~Ll~~gad~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~g-a  162 (584)
                      +++.++..+.+.  ...+..+.|+++.++..++.+++++|++.|.+.+..|..|.||||+|+..| +.+++++|++.| .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~~~~  163 (229)
T d1ixva_          85 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKS  163 (229)
T ss_dssp             HHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHHTTTCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcc-cccccccccccccc
Confidence            999999988654  446778999999999999999999999999999999999999999999998 899999999987 6


Q ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         163 STTIQDKIHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       163 ~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +++.+|. +|+||||+|+..|+.+++++|++ .|+|++.+|.+|+|||++|++.   +     +++.|.+
T Consensus       164 ~in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---~-----~~~~Ll~  224 (229)
T d1ixva_         164 AVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---Q-----VKKFFLN  224 (229)
T ss_dssp             CSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---H-----HHHHHHH
T ss_pred             ccccccc-ccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---H-----HHHHHHH
Confidence            8899998 99999999999999999999997 5999999999999999999753   2     6677655

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=4.9e-30  Score=241.47  Aligned_cols=205  Identities=22%  Similarity=0.278  Sum_probs=188.5

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy9492          17 KVFVGKCVEAGQDVNE-PDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA   95 (584)
Q Consensus        17 ~~~l~~ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga   95 (584)
                      .++|+.|+++|+|+|. .|.+|.||||+||..|+.+++++|+++|++++.++.. +.++++.++..++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT-GRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccc-ccccccccccccccccccccccccc
Confidence            5899999999999998 5899999999999999999999999999999987665 8999999999999988777766543


Q ss_pred             C-CCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCc
Q psy9492          96 D-PTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  174 (584)
Q Consensus        96 d-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  174 (584)
                      . ....+..|.++.+.+.........+.|.+.+.+++.+|..|.|||++|+..+ ..++++.+++.+.+++..|. .|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~-~~~~~~~l~~~~~~~~~~d~-~g~T  158 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN-NTEAVNILLMHHANRDAQDD-KDET  158 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccC-cceeeeeecccccccccccc-cccc
Confidence            3 3335667889999999999999999999999999999999999999999888 79999999999999999998 9999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      |||.|+..|+.++++.|+++|+|++.+|..|.||+++|+++++.+     ++++|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~-----iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHD-----IVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             ccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHH-----HHhhc
Confidence            999999999999999999999999999999999999999999998     88765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=254.96  Aligned_cols=219  Identities=25%  Similarity=0.297  Sum_probs=181.5

Q ss_pred             hhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHH---
Q psy9492          10 WYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS---   86 (584)
Q Consensus        10 ~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~---   86 (584)
                      .++.....++|+.|+++|+|+|..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.++   
T Consensus         6 ~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~-g~t~L~~A~~~g~~~~~~~   84 (408)
T d1n11a_           6 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKL   84 (408)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT-SCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC-CCCHHHHHHHcCCHHHHHH
Confidence            345666889999999999999999999999999999999999999999999999887655 8899998887776544   


Q ss_pred             ---------------------------------------------------------------HHHHHHCCCCCCCCCCC
Q psy9492          87 ---------------------------------------------------------------VVLLIQHGADPTLMDSE  103 (584)
Q Consensus        87 ---------------------------------------------------------------v~~Ll~~gad~~~~d~~  103 (584)
                                                                                     ++.|+++|++++..+..
T Consensus        85 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~  164 (408)
T d1n11a_          85 LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN  164 (408)
T ss_dssp             HHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             HHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCc
Confidence                                                                           45566677888888888


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC-----------------------------------------------
Q psy9492         104 GSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRN-----------------------------------------------  136 (584)
Q Consensus       104 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-----------------------------------------------  136 (584)
                      |.+|||.|+..|+.+++++|+++|++++..+..                                               
T Consensus       165 ~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  244 (408)
T d1n11a_         165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA  244 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcH
Confidence            999999999999999999999888776544333                                               


Q ss_pred             -------------------CCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy9492         137 -------------------GMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSS  197 (584)
Q Consensus       137 -------------------g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad  197 (584)
                                         |.||++.|+..+ +.+++++|++.|++++..+. .+.||||.|+..++.++++.+++.|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~-~~~i~~~Ll~~g~~~~~~~~-~~~t~L~~~~~~~~~~~~~~ll~~g~~  322 (408)
T d1n11a_         245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEG-HVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQAD  322 (408)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCC
T ss_pred             hHhhhhhccccccccccCCCCChhhhhhhcC-cHHHHHHHHHCCCccccccc-cccccchhhcccCcceeeeeecccccc
Confidence                               333344444444 45777888888888888887 888888888888888888999999999


Q ss_pred             CCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhcc
Q psy9492         198 LEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHY  236 (584)
Q Consensus       198 ~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~  236 (584)
                      ++.+|.+|.|||++|++.++.+     +++.|.+.+...
T Consensus       323 in~~d~~G~T~Lh~A~~~g~~~-----iv~~Ll~~GAd~  356 (408)
T d1n11a_         323 VNAKTKLGYSPLHQAAQQGHTD-----IVTLLLKNGASP  356 (408)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHH-----HHHHHHHTTCCS
T ss_pred             ccccCCCCCCHHHHHHHcCCHH-----HHHHHHHCCCCC
Confidence            9999999999999999999998     999998765543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=233.76  Aligned_cols=191  Identities=26%  Similarity=0.317  Sum_probs=176.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhC
Q psy9492          37 TVTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFG  115 (584)
Q Consensus        37 g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g  115 (584)
                      +.++|+.+|..|+.+.++.+++. +..++.++ ..|+||||+|+..|+.+++++|++.+.+....+..+.++++.|+..+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D-~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcC-CCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            46789999999999999777754 55666555 45999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         116 HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       116 ~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      +.+++++|+++|++++.+|..|.||||+|+..| ..+++++|+++|++++..|. .|.||||+|+..++.++++.|++.|
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~-~~e~~~~Ll~~g~d~~~~~~-~~~t~L~~a~~~~~~~~~~~L~~~~  159 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN-RHEIAVMLLEGGANPDAKDH-YEATAMHRAAAKGNLKMIHILLYYK  159 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcC-CHHHHHHHHHCCCCCCCcCC-CCCccchhhhhcCCcchhhhhcccc
Confidence            999999999999999999999999999999998 79999999999999999998 9999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhc
Q psy9492         196 SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDH  235 (584)
Q Consensus       196 ad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~  235 (584)
                      +|++.+|..|.|||+.|+..++.+     +++.|.+.+..
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~~~-----~v~~LL~~Gad  194 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEERVE-----EAKLLVSQGAS  194 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHH-----HHHHHHHTTCC
T ss_pred             ceeeeccCCCCceeccccccCcHH-----HHHHHHHCCCC
Confidence            999999999999999999999988     99999875443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-27  Score=234.23  Aligned_cols=222  Identities=22%  Similarity=0.241  Sum_probs=189.9

Q ss_pred             hhhhhhHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccC----------------------
Q psy9492          11 YEFELTKVFVGKCVEAGQDVNEPD-SETVTLLHWAAINNRIEIMKYFISQGAIVDAIG----------------------   67 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~----------------------   67 (584)
                      +-.....++++.|+++|+|+|.++ ..|.||||+|+..|+.+++++|++.+...+...                      
T Consensus        12 Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (285)
T d1wdya_          12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF   91 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchh
Confidence            345567899999999999999875 579999999999999999999999877653322                      


Q ss_pred             ----------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC----------CCCCChHHHHHHHhCCHHHHHHHHHC-
Q psy9492          68 ----------GDLQATPLHWATRQGHLDSVVLLIQHGADPTLM----------DSEGSTCIHQAAQFGHTRIVAYLVAK-  126 (584)
Q Consensus        68 ----------~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~t~L~~A~~~g~~~~v~~Ll~~-  126 (584)
                                +..+.++++.|+..|+...++.+++...+++.+          +..|.||||.|++.|+.+++++|+++ 
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  171 (285)
T d1wdya_          92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             HHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             hhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhcc
Confidence                      224678888888889988888888877766544          34589999999999999999999976 


Q ss_pred             CCCCCCCCCCCCcHHHHHHh---hcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCC
Q psy9492         127 GINVNLQDRNGMTALMWSAY---KVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS-HTSSLEIPN  202 (584)
Q Consensus       127 g~~~~~~d~~g~t~Lh~Aa~---~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~n  202 (584)
                      |++++..|..|.++.+.+..   .+...+++++|++.|++++..|. .|.||||+|+..|+.+++++|++ .|+|++.+|
T Consensus       172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~-~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d  250 (285)
T d1wdya_         172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  250 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC
T ss_pred             CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCC-CCCCccchhhhcCcHHHHHHHHHcCCCCCcCCC
Confidence            89999999999998876543   33245688999999999999998 99999999999999999999998 589999999


Q ss_pred             CCCCCHHHHHHhcCCCccchHHHHHHHHHHHhcccc
Q psy9492         203 AQGLTPFMLLEENIGAPWLGKATVDKITELKDHYNT  238 (584)
Q Consensus       203 ~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~~~  238 (584)
                      .+|.|||++|++.++.+     +++.|.+.++..+.
T Consensus       251 ~~G~TpL~~A~~~~~~e-----iv~~Ll~~GAd~n~  281 (285)
T d1wdya_         251 SDGKTALLLAVELKLKK-----IAELLCKRGASTDC  281 (285)
T ss_dssp             TTSCCHHHHHHHTTCHH-----HHHHHHHHSSCSCC
T ss_pred             CCCCCHHHHHHHcCCHH-----HHHHHHHCCCCCCc
Confidence            99999999999999999     99999887776554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.7e-28  Score=227.42  Aligned_cols=197  Identities=22%  Similarity=0.272  Sum_probs=146.3

Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----
Q psy9492          20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGA----   95 (584)
Q Consensus        20 l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga----   95 (584)
                      ++.+.+.|+++|.+|.+|.||||+|+..|+.++++.|+++|++++..... |.++++.|...++.++++.+.....    
T Consensus        23 l~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  101 (228)
T d1k1aa_          23 VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTL  101 (228)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSCTTSC
T ss_pred             HHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccc-cccccccccccccccchhhhhhccccccc
Confidence            33334466666666666666666666666666666666666666654443 5666666666666666665554321    


Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCc
Q psy9492          96 DPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV-NLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNV  174 (584)
Q Consensus        96 d~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~T  174 (584)
                      ..+..+....++++.+.........+.|.....+. ...+..+.+|++.|+..+ ..++.+.+++.|.+.+..|. .|+|
T Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~d~-~g~t  179 (228)
T d1k1aa_         102 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQHGANVNAQMY-SGSS  179 (228)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCBCT-TSCB
T ss_pred             cccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhh-hhhhhhhhhhhccccccccc-cCcc
Confidence            22334445566666666666666666666665443 345567899999999887 78999999999999999998 9999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCc
Q psy9492         175 ALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       175 pLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~  219 (584)
                      |||+|+..|+.+++++|+++|+|++.+|.+|+|||++|+++++.+
T Consensus       180 ~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         180 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            999999999999999999999999999999999999999888665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.3e-27  Score=209.48  Aligned_cols=153  Identities=23%  Similarity=0.285  Sum_probs=139.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHH
Q psy9492          39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR  118 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~  118 (584)
                      ++||+||..|+.++++.|+++|++++.++.. |.||||+|+ .|+.+++++|+++|++++.++..|.++++.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~-g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTT-SCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCc-ccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            7899999999999999999999999887655 999999875 78999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy9492         119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGA-STTIQDKIHGNVALHWAIYAKNHVAITTLVSHT  195 (584)
Q Consensus       119 ~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga-~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~g  195 (584)
                      .++.|++.+.+++..|..|.+|+|+|+..+ +.+++++|+++|+ +++..|. .|+||||+|++.|+.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999887 7899999988876 7888887 8999999999999999999999887

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=3e-26  Score=226.77  Aligned_cols=212  Identities=20%  Similarity=0.218  Sum_probs=181.4

Q ss_pred             hHHHHHHHHHcCCCCCCCC---------CCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHH
Q psy9492          16 TKVFVGKCVEAGQDVNEPD---------SETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDS   86 (584)
Q Consensus        16 ~~~~l~~ll~~g~d~n~~d---------~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~   86 (584)
                      ..+.++...+...+.+..-         .+|.|+|+.||..|+.++|++|+++|+++|..+.. |.||||+|+..|+.++
T Consensus        10 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~-G~T~L~~A~~~g~~ei   88 (291)
T d1s70b_          10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD-GLTALHQACIDDNVDM   88 (291)
T ss_dssp             HHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTT-CCBHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCcHHHHHHhcCCcee
Confidence            3455555555555444321         23459999999999999999999999999987765 9999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhc------
Q psy9492          87 VVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITF------  160 (584)
Q Consensus        87 v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~------  160 (584)
                      +++|+++|++....+..+.+|++.|+..++.++++.|+++|++.+..|..+.+|+++|+..+ ..+.++.++..      
T Consensus        89 v~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~ll~~~~~~~~  167 (291)
T d1s70b_          89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA-MEELLQNEVNRQGVDIE  167 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH-HHHHHHHHHHHHTCCHH
T ss_pred             eeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccc-cchhccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999998877 55566555532      


Q ss_pred             ---------------------CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCc
Q psy9492         161 ---------------------GASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAP  219 (584)
Q Consensus       161 ---------------------ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~  219 (584)
                                           ..+....+. .|.||||.|+..|+.++++.|+++|+|++.+|..|.|||++|+..++.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~  246 (291)
T d1s70b_         168 AARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE  246 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccccccchhhhcccccccccccC-CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHH
Confidence                                 222334454 8999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhc
Q psy9492         220 WLGKATVDKITELKDH  235 (584)
Q Consensus       220 ~l~~~~~~~l~~~~~~  235 (584)
                           +++.|.+.+..
T Consensus       247 -----iv~lLl~~Gad  257 (291)
T d1s70b_         247 -----ACRILVENLCD  257 (291)
T ss_dssp             -----HHHHHHHTTCC
T ss_pred             -----HHHHHHHCCCC
Confidence                 99999875443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.3e-26  Score=216.21  Aligned_cols=186  Identities=23%  Similarity=0.276  Sum_probs=168.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCCChHHHHHHH
Q psy9492          38 VTLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTL---MDSEGSTCIHQAAQ  113 (584)
Q Consensus        38 ~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~---~d~~g~t~L~~A~~  113 (584)
                      .+|||+||..|+.++++.|++. +.+++.++ ..|.||||+|+..|+.+++++|+++|++++.   .|..|.+|+|+|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            4899999999999999999885 55666555 4599999999999999999999999999874   56779999999999


Q ss_pred             hCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492         114 FGHTRIVAYLVAKGIN--VNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  191 (584)
Q Consensus       114 ~g~~~~v~~Ll~~g~~--~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~L  191 (584)
                      .+..++++.++..+..  ....+..+.||++.++..+ ..++++.|+..|.+.+.+|. .|+||||+|+..|+.++++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK-WFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccc-hhhhhhhhhhhcccccccCC-CCCCccchhhhcccccccccc
Confidence            9999999999988764  4557778999999999887 89999999999999999998 999999999999999999999


Q ss_pred             HhcC-CCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         192 VSHT-SSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       192 l~~g-ad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      ++.| .+++.+|.+|+|||++|+..++.+     +++.|.+
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~-----~v~~Ll~  193 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-----AAVLLVE  193 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHH-----HHHHHHH
T ss_pred             cccccccccccccccCCchhhhcccccHH-----HHHHHHH
Confidence            9987 688999999999999999999998     8888875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2.8e-26  Score=224.95  Aligned_cols=174  Identities=28%  Similarity=0.359  Sum_probs=154.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--
Q psy9492          17 KVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHG--   94 (584)
Q Consensus        17 ~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g--   94 (584)
                      ....+.++++|+|+|.+|.+|.||||+|+..|+.+++++|+++|++++.++.. |.||||+|+..++.++++.+.+.+  
T Consensus        54 ~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~-g~t~l~~a~~~~~~~~~~~l~~~~~~  132 (277)
T d2fo1e1          54 VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTKL  132 (277)
T ss_dssp             HHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred             hcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccc-ccccccchhhhcchhhhhhhhhcccc
Confidence            34456678999999999999999999999999999999999999999987655 999999999999998888776421  


Q ss_pred             ---------------------------------------------CCCCCCCCCCChHHHHHHHhCCHHHHHHHH-HCCC
Q psy9492          95 ---------------------------------------------ADPTLMDSEGSTCIHQAAQFGHTRIVAYLV-AKGI  128 (584)
Q Consensus        95 ---------------------------------------------ad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~  128 (584)
                                                                   ...+..+..|.||||.++..++.+++++++ ..+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~  212 (277)
T d2fo1e1         133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS  212 (277)
T ss_dssp             HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred             cccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccc
Confidence                                                         012234567899999999999999998755 5689


Q ss_pred             CCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         129 NVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       129 ~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      +.+.+|..|.||||+|+..| +.+++++|++.|+++|.+|. .|+||||+|++.|+.+++++|++
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g-~~~iv~~Ll~~gadin~~d~-~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         213 NKDKQDEDGKTPIMLAAQEG-RIEVVMYLIQQGASVEAVDA-TDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSSCCCS-SSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHcC-CHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999998 89999999999999999998 99999999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.9e-27  Score=222.66  Aligned_cols=181  Identities=29%  Similarity=0.279  Sum_probs=159.7

Q ss_pred             hhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy9492          14 ELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQH   93 (584)
Q Consensus        14 ~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~   93 (584)
                      +...++++.+.+.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++..+.. |.||||.|+..|+.++++.|++.
T Consensus        16 ~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~-g~t~l~~~~~~~~~~~~~~l~~~   94 (221)
T d1iknd_          16 ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQS   94 (221)
T ss_dssp             SSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhh
Confidence            33456677888899999999999999999999999999999999999999887655 99999999999999999999998


Q ss_pred             CCCCC------CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHhhcCChhhHHHHHhcCCCccc
Q psy9492          94 GADPT------LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQD-RNGMTALMWSAYKVFSLDPTRLLITFGASTTI  166 (584)
Q Consensus        94 gad~~------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~  166 (584)
                      +.+..      .....|.||+|.|+..++.+++++|++.|.+++..+ .+|.||||+|+..| +.+++++|+++|+|++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g-~~~~v~~Ll~~gad~~~  173 (221)
T d1iknd_          95 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGADVNR  173 (221)
T ss_dssp             TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHTTTCCSCC
T ss_pred             cccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc-cHHHHHHHHhcCCcccc
Confidence            76533      335568999999999999999999999999988766 56999999999998 89999999999999999


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy9492         167 QDKIHGNVALHWAIYAKNHVAITTLVSHTSS  197 (584)
Q Consensus       167 ~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad  197 (584)
                      +|. .|+||||+|+..++.++++.|++.+.+
T Consensus       174 ~~~-~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         174 VTY-QGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCT-TCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cCC-CCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            998 999999999999999999999998765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=201.58  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=133.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCH
Q psy9492          39 TLLHWAAINNRIEIMKYFISQ-GAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT  117 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~  117 (584)
                      ..||.||..|+.++|+.|+++ +++++..+. .|.||||+|+ .|+.++++.|++++++++.++..|.+|++.+++.++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~-~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCC-CCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            459999999999999998875 778887765 4899999886 4888999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy9492         118 RIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSH  194 (584)
Q Consensus       118 ~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~  194 (584)
                      ++++.++++|++++.+|..|.||||+|+..| +.+++++|+ .|++++..|. +|+||||+|+..|+.+++++|++|
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~-~~~i~~~L~-~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLA-AESDLHRRDA-RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHH-TTSCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeeccccccc-ccccccccc-ccccccccCC-CCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999888 788998877 6889998888 999999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=201.29  Aligned_cols=151  Identities=26%  Similarity=0.343  Sum_probs=144.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChh
Q psy9492          73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  152 (584)
Q Consensus        73 tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~  152 (584)
                      +|||+||..|+.++|+.|+++|+|++.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.++++.++..+ ..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~-~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG-FLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccc-ccc
Confidence            7999999999999999999999999999999999999886 78999999999999999999999999999999888 899


Q ss_pred             hHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS-SLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       153 ~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      .++.|++.+.+++..|. .|.+|||+|+..++.++++.|+++|+ +.+.+|..|+||+++|++.++.+     ++++|.+
T Consensus        81 ~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~-----iv~~Ll~  154 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE-----VVSLMQA  154 (156)
T ss_dssp             HHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHH
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            99999999999999998 99999999999999999999999987 89999999999999999999998     8888865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.9e-25  Score=198.99  Aligned_cols=149  Identities=29%  Similarity=0.372  Sum_probs=100.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHH
Q psy9492          39 TLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTR  118 (584)
Q Consensus        39 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~  118 (584)
                      ||||.||+.|+.+++++|+++|++++ . +..|.||||+|+..++.++++.+++........+..+.++++.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-c-ccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            66777777777777777777766654 2 334667777777777777776666666666666666666677776666777


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492         119 IVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTL  191 (584)
Q Consensus       119 ~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~L  191 (584)
                      .++++.++|++.+.+|.+|.||||+|+..| +.+++++|++.|++++..|. +|.||||+|+.+|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g-~~~iv~~ll~~gad~~~~d~-~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHN-HQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcc-hhheeeeccccccCCcccCC-CCCCHHHHHHHcCCHHHHHhC
Confidence            777776666666666666777777666666 56666777777776666666 677777777777776666654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.3e-25  Score=195.58  Aligned_cols=149  Identities=24%  Similarity=0.308  Sum_probs=142.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChh
Q psy9492          73 TPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLD  152 (584)
Q Consensus        73 tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~  152 (584)
                      ||||.|++.|+.++|+.|+++|++++ .|..|.||||+|++.++.++++.++.........+..+.++++.++... ..+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG-HAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-CHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccc-cce
Confidence            99999999999999999999999887 6999999999999999999999999998888888889999999999887 899


Q ss_pred             hHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHH
Q psy9492         153 PTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKI  229 (584)
Q Consensus       153 ~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l  229 (584)
                      .++++...|++.+.+|. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+++++.+     ++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~-~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~e-----iv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-----LAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHH
T ss_pred             eeecccccCCccccccc-cCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHH-----HHHhC
Confidence            99999999999999998 9999999999999999999999999999999999999999999999998     87766

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=194.82  Aligned_cols=150  Identities=26%  Similarity=0.379  Sum_probs=140.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCCh
Q psy9492          73 TPLHWATRQGHLDSVVLLIQH-GADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL  151 (584)
Q Consensus        73 tpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~  151 (584)
                      +.||.||..|+.++|+.|++. +++++.+|..|.||||.|+ .|+.+++++|++++.+++..+..|.+|++.++..+ ..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~-~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG-FL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccc-cc
Confidence            469999999999999999985 7899999999999999987 48899999999999999999999999999999888 89


Q ss_pred             hhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHH
Q psy9492         152 DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       152 ~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      ++++.+++.|+++|.+|. .|.||||+|+..|+.+++++|+ .|+|++.+|.+|+||+++|++.++.+     +++.|.+
T Consensus        82 ~~~~~~l~~~~~~n~~~~-~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~-----iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD-----LVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH-----HHHHHHT
T ss_pred             cccccccccccccccccC-CCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH-----HHHHHHh
Confidence            999999999999999998 9999999999999999999877 79999999999999999999999998     8888764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.9e-25  Score=219.64  Aligned_cols=182  Identities=18%  Similarity=0.144  Sum_probs=127.2

Q ss_pred             HcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCH-------HHHHHHHHCCCC
Q psy9492          25 EAGQDVNEP-DSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHL-------DSVVLLIQHGAD   96 (584)
Q Consensus        25 ~~g~d~n~~-d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~-------~~v~~Ll~~gad   96 (584)
                      ..+.|+|.. |.+|.||||+||..|+.++|++|+++|++++.++.. |+||||.|+..++.       ++++++.   .+
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~-G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~  169 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDYLY---PC  169 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHHHHG---GG
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcc-cccHHHHhhhcccchhhhhHHHHHHHHh---hh
Confidence            357888876 899999999999999999999999999999987655 99999999987752       3444443   34


Q ss_pred             CCCCCCCCChHHHHHHHhCC----HH--------HHHHHHHCC-CCCCCCCCCCCcHHHHHHhhcCChhh----HHHHHh
Q psy9492          97 PTLMDSEGSTCIHQAAQFGH----TR--------IVAYLVAKG-INVNLQDRNGMTALMWSAYKVFSLDP----TRLLIT  159 (584)
Q Consensus        97 ~~~~d~~g~t~L~~A~~~g~----~~--------~v~~Ll~~g-~~~~~~d~~g~t~Lh~Aa~~~~~~~~----~~~Ll~  159 (584)
                      ++.+|..|+||||.++..+.    ..        ++..+.+.+ .+....+..+.++++.+.........    ...++ 
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII-  248 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH-
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH-
Confidence            56678889999998876544    22        333444443 33344455566666655443311111    11222 


Q ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Q psy9492         160 FGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNAQGLTPFMLLE  213 (584)
Q Consensus       160 ~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~~g~tpl~lA~  213 (584)
                       +..+|.+|. +|+||||+|++.|+.++|++|+++|||++.+|++|.||+++|+
T Consensus       249 -~~~in~~D~-~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         249 -ANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -HHTTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             -hcCccCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence             234788998 9999999999999999999999999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.6e-23  Score=204.36  Aligned_cols=178  Identities=25%  Similarity=0.297  Sum_probs=147.8

Q ss_pred             HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccC---------CCCCCcHHHHHHHcCCHHHHHHHHHC-
Q psy9492          24 VEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG---------GDLQATPLHWATRQGHLDSVVLLIQH-   93 (584)
Q Consensus        24 l~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~---------~~~g~tpLh~A~~~g~~~~v~~Ll~~-   93 (584)
                      ++...+....+..|.++++.|+..++...++.+++...+++...         ...|.||||+|++.|+.+++++|+++ 
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  171 (285)
T d1wdya_          92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             HHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             hhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhcc
Confidence            33444444445566667777777777777777776655544322         33589999999999999999999975 


Q ss_pred             CCCCCCCCCCCChHHHHHHHhC----CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHh-cCCCccccc
Q psy9492          94 GADPTLMDSEGSTCIHQAAQFG----HTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT-FGASTTIQD  168 (584)
Q Consensus        94 gad~~~~d~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~-~ga~~~~~d  168 (584)
                      |++++.+|..|.++.+.+...+    ..+++++|+++|++++.+|..|.||||+|+..| +.+++++|++ .|+++|..|
T Consensus       172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~-~~~~v~~lL~~~g~din~~d  250 (285)
T d1wdya_         172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTD  250 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT-CHHHHHHHHHSSSCCTTCCC
T ss_pred             CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcC-cHHHHHHHHHcCCCCCcCCC
Confidence            8999999999999888765543    357999999999999999999999999999988 8999999997 499999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy9492         169 KIHGNVALHWAIYAKNHVAITTLVSHTSSLEIPNA  203 (584)
Q Consensus       169 ~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~n~  203 (584)
                      . +|+||||+|++.|+.+++++|+++|||+|++|.
T Consensus       251 ~-~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         251 S-DGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             T-TSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             C-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            8 999999999999999999999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.6e-26  Score=235.00  Aligned_cols=193  Identities=13%  Similarity=0.041  Sum_probs=155.7

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHH---HHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCh
Q psy9492          32 EPDSETVTLLHWAAINNRIEIMKY---FISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMD--SEGST  106 (584)
Q Consensus        32 ~~d~~g~t~Lh~A~~~~~~~~v~~---Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d--~~g~t  106 (584)
                      .+|..|.||||+||.+|+.+++++   |++.|+++|.++.. |.||||+||+.|+.++|++|+++|++++..+  .+|.|
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~-g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH-HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            456689999999999999887766   68899999987765 9999999999999999999999999998865  45899


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccC--------------
Q psy9492         107 CIHQAAQFGHTRIVAYLVAKGINVN---LQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDK--------------  169 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~g~~~~---~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~--------------  169 (584)
                      |||+|++.|+.+++++|++.|++..   ..+.++.||+|.|+.+| +.+++++|++.|++++..+.              
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g-~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  242 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG-HHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI  242 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC-CHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcC-HHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHH
Confidence            9999999999999999999987653   33455667777777777 89999999988765543211              


Q ss_pred             ------------------CC----------------CCcHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHHH
Q psy9492         170 ------------------IH----------------GNVALHWAIYAKNHVAITTLVSHTSS-----LEIPNAQGLTPFM  210 (584)
Q Consensus       170 ------------------~~----------------g~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~n~~g~tpl~  210 (584)
                                        ..                +.|+|+.|+..|..+++++|++.++.     .+..+.+|.|||+
T Consensus       243 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence                              01                13678888888899999999998763     4455678999999


Q ss_pred             HHHhcCCCccchHHHHHHHHH
Q psy9492         211 LLEENIGAPWLGKATVDKITE  231 (584)
Q Consensus       211 lA~~~~~~~~l~~~~~~~l~~  231 (584)
                      +|++.|+.+     +++.|.+
T Consensus       323 lA~~~Gn~e-----~v~lLL~  338 (346)
T d2ajaa1         323 LALRLGNQG-----ACALLLS  338 (346)
T ss_dssp             HHHHHTCTT-----HHHHHTT
T ss_pred             HHHHcCcHH-----HHHHHhC
Confidence            999999999     9999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.7e-24  Score=182.74  Aligned_cols=120  Identities=23%  Similarity=0.270  Sum_probs=89.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHhhcC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGM-TALMWSAYKVF  149 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~Lh~Aa~~~~  149 (584)
                      +.++||+|+..|+.+++++|+++|+|++.+|..|.||+|.|+ .|+.+++++|+++|++++.+|..+. ||||+|+..| 
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g-   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG-   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT-
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-
Confidence            456777777777777777777777777777777777777554 5777777777777777777777665 4777777777 


Q ss_pred             ChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy9492         150 SLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVS  193 (584)
Q Consensus       150 ~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~  193 (584)
                      +.+++++|++.|++++.+|. .|+||||+|+.+|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~-~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence            67777777777777777776 77777777777777777777754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-23  Score=194.49  Aligned_cols=177  Identities=22%  Similarity=0.174  Sum_probs=155.1

Q ss_pred             hhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcc---cccCCCCCCcHHHHHHHcCCHHHH
Q psy9492          11 YEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIV---DAIGGDLQATPLHWATRQGHLDSV   87 (584)
Q Consensus        11 ~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~tpLh~A~~~g~~~~v   87 (584)
                      +......++++.|++.|++++..+.+|.++++.|...++.++++.+.......   .........++||.+.........
T Consensus        47 A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  126 (228)
T d1k1aa_          47 AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV  126 (228)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhh
Confidence            33455778999999999999999999999999999999999999887643221   122233467999999999999999


Q ss_pred             HHHHHCCCCCCC-CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCccc
Q psy9492          88 VLLIQHGADPTL-MDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTI  166 (584)
Q Consensus        88 ~~Ll~~gad~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~  166 (584)
                      +.|.....+... .+..|.++++.|++.+...+++.++++|.+.+.+|..|.||||+|+.+| +.+++++|+++|+++|.
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~Gad~n~  205 (228)
T d1k1aa_         127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG-LLPLVRTLVRSGADSSL  205 (228)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT-CHHHHHHHHHTTCCTTC
T ss_pred             hhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcC-CHHHHHHHHHCCCCCCC
Confidence            999988766543 5667999999999999999999999999999999999999999999998 89999999999999999


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHH
Q psy9492         167 QDKIHGNVALHWAIYAKNHVAIT  189 (584)
Q Consensus       167 ~d~~~g~TpLh~A~~~g~~~~v~  189 (584)
                      +|. +|+||||+|+++|+.++||
T Consensus       206 ~d~-~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         206 KNC-HNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CCT-TSCCTTTTCSSHHHHHHHT
T ss_pred             CCC-CCCCHHHHHHhCCCccccC
Confidence            998 9999999999999988875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=2.1e-22  Score=188.62  Aligned_cols=182  Identities=24%  Similarity=0.195  Sum_probs=167.2

Q ss_pred             cchhhhhhhHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHH
Q psy9492           8 KNWYEFELTKVFVGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSV   87 (584)
Q Consensus         8 ~~~~~~~~~~~~l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v   87 (584)
                      .+++......++++.|++.|+++|.+|..+.++++.++..++.+...................|.++.+.+.........
T Consensus        27 L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (209)
T d1ot8a_          27 LHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMV  106 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHH
T ss_pred             HHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            34455666889999999999999999999999999999999988888777766555555556688999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccc
Q psy9492          88 VLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQ  167 (584)
Q Consensus        88 ~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~  167 (584)
                      +.|.+++++++.++..|.||++.|+..+..++++.+++.+.+++..|..|.||||+|+.+| +.+++++|++.|++++..
T Consensus       107 ~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g-~~~~v~~Ll~~gad~n~~  185 (209)
T d1ot8a_         107 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG-SYEASKALLDNFANREIT  185 (209)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCC
T ss_pred             hhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhcccc-HHHHHHHHHHCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999998 899999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHH
Q psy9492         168 DKIHGNVALHWAIYAKNHVAITTL  191 (584)
Q Consensus       168 d~~~g~TpLh~A~~~g~~~~v~~L  191 (584)
                      |. .|+||||+|+++|+.++|++|
T Consensus       186 d~-~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         186 DH-MDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CC-CCCCHHHHHHHcCCHHHHhhc
Confidence            98 999999999999999999976

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-23  Score=177.46  Aligned_cols=121  Identities=23%  Similarity=0.273  Sum_probs=112.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHh
Q psy9492          36 ETVTLLHWAAINNRIEIMKYFISQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGS-TCIHQAAQF  114 (584)
Q Consensus        36 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-t~L~~A~~~  114 (584)
                      .+.++||+|+.+|+.+++++|+++|+++|..+.. |.||||+|+ .|+.+++++|+++|++++.+|..|. ||||.|++.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~-g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSY-GRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccccccc-ccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            3568999999999999999999999999987655 999999775 7999999999999999999999876 699999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHh
Q psy9492         115 GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLIT  159 (584)
Q Consensus       115 g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~  159 (584)
                      |+.+++++|+++|++++.+|..|.||||+|+.+| +.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g-~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG-HRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHSS
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHcC-CHHHHHHHHh
Confidence            9999999999999999999999999999999998 8999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=4.1e-24  Score=181.59  Aligned_cols=104  Identities=26%  Similarity=0.257  Sum_probs=42.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q psy9492         107 CIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHV  186 (584)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~  186 (584)
                      ||++|++.|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|+++|.+|. .|+||||+|+..|+.+
T Consensus         5 pL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~-~~~~~~~ll~~g~din~~d~-~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           5 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG-QLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHS-TTTHHHHHHHSSCTTTCCSS-SCSCHHHHHHTTTCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccc-ccccccccccccceeeeccc-ccccchhhhhhcCchh
Confidence            333333333333333333333333333333444444433333 33344444444444444443 4444444444444444


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy9492         187 AITTLVSHTSSLEIPNAQGLTPFMLL  212 (584)
Q Consensus       187 ~v~~Ll~~gad~~~~n~~g~tpl~lA  212 (584)
                      ++++|+++|+|++.+|.+|.||+++|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            44444444444444444444444443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.1e-23  Score=177.21  Aligned_cols=107  Identities=28%  Similarity=0.458  Sum_probs=103.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCCh
Q psy9492          72 ATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSL  151 (584)
Q Consensus        72 ~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~  151 (584)
                      .|||++|++.|+.++++.|+++|+|++.+|..|.||+|+|+..|+.+++++|+++|++++.+|..|.||||+|+.+| +.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~-~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG-HV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT-CC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcC-ch
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999998 89


Q ss_pred             hhHHHHHhcCCCcccccCCCCCcHHHHHH
Q psy9492         152 DPTRLLITFGASTTIQDKIHGNVALHWAI  180 (584)
Q Consensus       152 ~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~  180 (584)
                      +++++|++.|++++.+|. +|+||||+|.
T Consensus        82 ~~v~~Ll~~Gad~~~~d~-~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGP-DGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSS-STCCCCCTCS
T ss_pred             hhhhhhhcccccceeeCC-CCCCHHHHHh
Confidence            999999999999999998 9999999883

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=7.3e-25  Score=222.57  Aligned_cols=173  Identities=16%  Similarity=0.156  Sum_probs=135.8

Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCcccccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy9492          20 VGKCVEAGQDVNEPDSETVTLLHWAAINNRIEIMKYFISQGAIVDAIG-GDLQATPLHWATRQGHLDSVVLLIQHGADPT   98 (584)
Q Consensus        20 l~~ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~   98 (584)
                      ++.|++.|+++|.+|.+|.||||+||.+|+.++|++|+++|++++..+ ...|.||||+|+..|+.++|++|++.|+++.
T Consensus       109 ~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~  188 (346)
T d2ajaa1         109 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA  188 (346)
T ss_dssp             HTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             HHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCccc
Confidence            344688999999999999999999999999999999999999988754 2348999999999999999999999997653


Q ss_pred             ---CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC---------------------------------CCC------
Q psy9492          99 ---LMDSEGSTCIHQAAQFGHTRIVAYLVAKGINVNLQ---------------------------------DRN------  136 (584)
Q Consensus        99 ---~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------------------------------d~~------  136 (584)
                         ..+..|.||++.|++.|+.+++++|++.|++++..                                 ..+      
T Consensus       189 ~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  268 (346)
T d2ajaa1         189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV  268 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCS
T ss_pred             ccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHH
Confidence               33455678888899999999999999876443211                                 011      


Q ss_pred             ----------CCcHHHHHHhhcCChhhHHHHHhcCCCc-----ccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy9492         137 ----------GMTALMWSAYKVFSLDPTRLLITFGAST-----TIQDKIHGNVALHWAIYAKNHVAITTLVSH  194 (584)
Q Consensus       137 ----------g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~-----~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~  194 (584)
                                +.++++.|+..+ ..+++++|++.+...     +..+. +|+||||+|++.|+.++|++|++.
T Consensus       269 ~~~~~~~~~~~~~~l~~a~~~~-~ld~v~~Ll~~~~~~~~~~~~~~~~-~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         269 TKSECLQGFYMLRNLIRRNDEV-LLDDIRFLLSIPGIKALAPTATIPG-DANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCGG-GHHHHHHHHTSTTTGGGSSCCSSTT-CCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hcccccccchhhhHHHHHhcCC-hHHHHHHHHhCcChhhhcccccCCC-CCCcHHHHHHHcCcHHHHHHHhCC
Confidence                      124666676666 688999999887643     23334 789999999999999999999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-22  Score=174.56  Aligned_cols=60  Identities=35%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCC
Q psy9492          71 QATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHTRIVAYLVAKGINV  130 (584)
Q Consensus        71 g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  130 (584)
                      |.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|+++
T Consensus        34 g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v   93 (130)
T d1ycsb1          34 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV   93 (130)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCc
Confidence            333333333333333333333333333333333333333333333333333333333333

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.1e-22  Score=170.27  Aligned_cols=120  Identities=17%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q psy9492         106 TCIHQAAQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNH  185 (584)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~  185 (584)
                      ++|+.|+..|+.++++.|+++|+|++.+|.+|.||||+|+..+ +.+++++|++.|+++|.+|. +|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~-~~~~~~~ll~~g~~~~~~d~-~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG-HTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT-CHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccc-cccccccccccccccccccc-cCcccccccchhhHH
Confidence            3455555555555555555555555555555555555555554 45555555555555555555 566666666666666


Q ss_pred             HHHHHHHhcCCCCCCCCC-CCCCHHHHH--HhcCCCccchHHHHHHHHHH
Q psy9492         186 VAITTLVSHTSSLEIPNA-QGLTPFMLL--EENIGAPWLGKATVDKITEL  232 (584)
Q Consensus       186 ~~v~~Ll~~gad~~~~n~-~g~tpl~lA--~~~~~~~~l~~~~~~~l~~~  232 (584)
                      +++++|+++|+|++..+. .|+||++++  .++++.+     ++++|...
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~e-----iv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ-----CSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC-----HHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHH-----HHHHHHhH
Confidence            666666666666655443 355555544  2334455     55555543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.9e-20  Score=166.07  Aligned_cols=118  Identities=24%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCC------CCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhh
Q psy9492          77 WATRQGHLDSVVLLIQHGADPTLM------DSEGSTCIHQAAQF---GHTRIVAYLVAKGINVNLQDRNGMTALMWSAYK  147 (584)
Q Consensus        77 ~A~~~g~~~~v~~Ll~~gad~~~~------d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~  147 (584)
                      -|++.+++..+..++..|+|++..      +..|.||||+|++.   ++.+++++|+++|++++.+|..|.||||+|+..
T Consensus        12 ~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~   91 (154)
T d1dcqa1          12 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT   91 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccccc
Confidence            344444544444444444444332      33445555555543   334455555555555555555555555555544


Q ss_pred             cCChhhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy9492         148 VFSLDPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLVSHTS  196 (584)
Q Consensus       148 ~~~~~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll~~ga  196 (584)
                      | +.+++++|+++|++++..|. .|+||||+|+..|+.+++++|++.++
T Consensus        92 ~-~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          92 D-NAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             T-CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             c-cccccccccccCccccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            4 45555555555555555554 55555555555555555555555443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=7.1e-20  Score=162.38  Aligned_cols=124  Identities=19%  Similarity=0.173  Sum_probs=110.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCccccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy9492          40 LLHWAAINNRIEIMKYFISQGAIVDAI-----GGDLQATPLHWATRQ---GHLDSVVLLIQHGADPTLMDSEGSTCIHQA  111 (584)
Q Consensus        40 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~-----~~~~g~tpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A  111 (584)
                      .|+.|+.+++...+..++..|.+++..     .+..|+||||+|++.   |+.+++++|+++|+|++.+|..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            355788899999999999999876643     234589999999974   678999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHhhcCChhhHHHHHhcCCCc
Q psy9492         112 AQFGHTRIVAYLVAKGINVNLQDRNGMTALMWSAYKVFSLDPTRLLITFGAST  164 (584)
Q Consensus       112 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~Aa~~~~~~~~~~~Ll~~ga~~  164 (584)
                      ++.|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|++.++..
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~-~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK-HEHCEELLTQALSGR  140 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcC-CHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999988 799999999986543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=6.7e-19  Score=174.62  Aligned_cols=172  Identities=16%  Similarity=0.136  Sum_probs=116.5

Q ss_pred             HCCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHhCCH-------HHHHHHHHCCCCC
Q psy9492          58 SQGAIVDAIGGDLQATPLHWATRQGHLDSVVLLIQHGADPTLMDSEGSTCIHQAAQFGHT-------RIVAYLVAKGINV  130 (584)
Q Consensus        58 ~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t~L~~A~~~g~~-------~~v~~Ll~~g~~~  130 (584)
                      ..+.++|...+..|+||||+||..|+.++|++|+++|+|++.+|..|.||||.|+..++.       ++++++.   .++
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~  170 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCL  170 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGG
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhh
Confidence            457788865455699999999999999999999999999999999999999999987652       3444443   346


Q ss_pred             CCCCCCCCcHHHHHHhhcCC---h--------hhHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-h--cCC
Q psy9492         131 NLQDRNGMTALMWSAYKVFS---L--------DPTRLLITFGASTTIQDKIHGNVALHWAIYAKNHVAITTLV-S--HTS  196 (584)
Q Consensus       131 ~~~d~~g~t~Lh~Aa~~~~~---~--------~~~~~Ll~~ga~~~~~d~~~g~TpLh~A~~~g~~~~v~~Ll-~--~ga  196 (584)
                      +.+|..|+||||.++..+..   .        .++..+.+.+..........+.++++.+........+..+. .  .+.
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            77889999999998865532   1        13345556655544444336777777776655544333221 1  123


Q ss_pred             CCCCCCCCCCCHHHHHHhcCCCccchHHHHHHHHHHHhccc
Q psy9492         197 SLEIPNAQGLTPFMLLEENIGAPWLGKATVDKITELKDHYN  237 (584)
Q Consensus       197 d~~~~n~~g~tpl~lA~~~~~~~~l~~~~~~~l~~~~~~~~  237 (584)
                      .+|.+|.+|+||||+|+++++.+     +++.|.+.+...+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~-----iv~~Ll~~GAd~~  286 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNIS-----IVDALLDYGADPF  286 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHH-----HHHHHHHTTCCTT
T ss_pred             CccCCCCCCCCHHHHHHHcCCHH-----HHHHHHHCCCCCC
Confidence            47899999999999999999999     9999988655443