Psyllid ID: psy9494

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MTWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLVHRPFPICKILENSHIPSQEL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccccccccccHHHHHccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHccEEEEEccccccccEEEccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHccccccHHHHHHcccccEEEccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEHHHHHcHcEEEEEEcccEEEEEEccHHHHHHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEccccHHHHcccccHHHcHHHHHHHHHHccccEEEEEEcEEcccHHHHHHHHHEEEEHccccccccccEEccccccHccccEEEEEEEcccHHcHcHHHcccEEEEEEcccccHHHHHHHHHcHHHHHHHHHHccHccHHHHHHcccccEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHEHcccccccccc
Coil and Loop (DISEMBL)
MTWVFYHRAMLRLVSSVCTKKILNITLIslnrpdkinaiNLKTLDALQENIKrfeddtesplailygqegnfcsgfdlheldenpdtklFDDFREFLqkpakkpiIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALhvprtqlkhslrdnlsrdlaiptcdVTIRRLGqmigtsrtMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKkkaknghlvhrpfpickilenshipsqel
Flexible Loop (DISEMBL)
MTWVFYHRAMLRLVSSVCTKKILNItlislnrpdkinAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVprtqlkhslrdnlsrdlaiptcdvtirrlgqmigtsrtmDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKnghlvhrpfpickilenshipsqel
Low Complexity Region (SEG)
MTWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQkkkkakNGHLVHRPFPICKILENSHIPSQEL
Disordered region (IsUnstruct)
**WVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLVHRPFPICKILE*********
Disordered Region (DISOPRED)
********AMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKN*HLVHRPFPICKILEN********
Disordered Region (DISEMBL)
MTWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLVHRPFPICKILENSHIPSQEL
Disordered Region (DISPRO)
*TWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLVHRPFPICKILEN********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLVHRPFPICKILENSHIPSQEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
A4YI89	259	3-hydroxypropionyl-coenzy	yes	N/A	0.630	0.764	0.301	8e-19
Q1ZXF1	277	Probable enoyl-CoA hydrat	no	N/A	0.617	0.700	0.289	1e-16
O07137	257	Probable enoyl-CoA hydrat	yes	N/A	0.675	0.824	0.264	4e-14
O34893	260	Putative enoyl-CoA hydrat	yes	N/A	0.522	0.630	0.312	4e-14
P14604	290	Enoyl-CoA hydratase, mito	yes	N/A	0.592	0.641	0.278	6e-14
P30084	290	Enoyl-CoA hydratase, mito	yes	N/A	0.576	0.624	0.264	9e-14
Q58DM8	290	Enoyl-CoA hydratase, mito	yes	N/A	0.601	0.651	0.278	9e-14
P34559	288	Probable enoyl-CoA hydrat	no	N/A	0.550	0.600	0.263	2e-13
P64014	243	Probable enoyl-CoA hydrat	no	N/A	0.649	0.839	0.258	2e-13
P64015	243	Probable enoyl-CoA hydrat	no	N/A	0.649	0.839	0.258	2e-13

>sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 41/239 (17%)

Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           ++ TKK  N+  I+LNRPDK+NA+N K L+ L   + + E D E  + I+ G+   FC+G
Sbjct: 5   TIETKKEGNLFWITLNRPDKLNALNAKLLEELDRAVSQAESDPEIRVIIITGKGKAFCAG 64

Query: 76  FDLHELDE-NPDT--KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE 130
            D+ + ++  P    K     RE + K     KP IA I GYA+G GL+LAL CD+R   
Sbjct: 65  ADITQFNQLTPAEAWKFSKKGREIMDKIEALSKPTIAMINGYALGGGLELALACDIRIAA 124

Query: 131 ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRL 190
           E   +G                         P              +L I       +RL
Sbjct: 125 EEAQLGL------------------------PEI------------NLGIYPGYGGTQRL 148

Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
            ++IG  R ++M+  G  I  ++A  +GL N++V       E    A +++K S   LA
Sbjct: 149 TRVIGKGRALEMMMTGDRIPGKDAEKYGLVNRVVPLANLEQETRKLAEKIAKKSPISLA 207

Plays a role in autotrophic carbon fixation via the 3-hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl-CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crotonyl-CoA. Inactive towards (R)-3-hydroxybutyryl-CoA.
Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1EC: 6

>sp|Q1ZXF1|ECHM_DICDI Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 41/235 (17%)

Query: 19  TKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL 78
           T+K   + L++LNRP  +NA++   +  +   +K F++D +    I+ G E  F +G D+
Sbjct: 28  TEKKGRVGLVTLNRPKSLNALSDGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGADI 87

Query: 79  HELDEN--PDTKLFDDFREF--LQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
            E+++   PD    D   ++  L K  +KPIIAA+ GYA+G G +LA+ CD+    E  +
Sbjct: 88  KEMEKVTLPDAYNNDLLAQWHDLTK-IRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAV 146

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
            G                         P  +L             IP C  T +RL + I
Sbjct: 147 FG------------------------QPEIKLG-----------TIPGCGGT-QRLIRAI 170

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           G S+ M+++  G ++TA EA   GL +K+V     + EA   A +++  SQ  +A
Sbjct: 171 GKSKAMELVLTGNNLTAVEAEKAGLVSKVVPVEELLTEATKMAEKIASYSQLTVA 225

Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|O07137|ECHA8_MYCLE Probable enoyl-CoA hydratase echA8 OS=Mycobacterium leprae (strain TN) GN=echA8 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 41/253 (16%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + +I+LNRP  +NA+N + ++ +    K  + D +    ++ G    F +G D+ E+   
Sbjct: 14  VGIITLNRPQALNALNSQMMNEITNAAKELDIDPDVGAILITGSPKVFAAGADIKEMASL 73

Query: 85  PDTKLFD-DFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
             T  FD DF     K A  + P+IAA+ GYA+G G +LA+ CDL    +    G     
Sbjct: 74  TFTDAFDADFFSAWGKLAAVRTPMIAAVAGYALGGGCELAMMCDLLIAADTAKFG----- 128

Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
                                + ++K  +   +             +RL + IG ++ MD
Sbjct: 129 ---------------------QPEIKLGVLPGMGGS----------QRLTRAIGKAKAMD 157

Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSM--LADRATVLSECE 259
           +I  GR I A EA   GL +++V     + EA   A  +S++S+S   +A  A   S   
Sbjct: 158 LILTGRTIDAAEAERSGLVSRVVLADDLLPEAKAVATTISQMSRSATRMAKEAVNRSFES 217

Query: 260 TCREEWMSERKHY 272
           T  E  + ER+ +
Sbjct: 218 TLAEGLLHERRLF 230

Could possibly oxidize fatty acids using specific components.

Mycobacterium leprae (taxid: 1769)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|O34893|YNGF_BACSU Putative enoyl-CoA hydratase/isomerase YngF OS=Bacillus subtilis (strain 168) GN=yngF PE=3 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 95/208 (45%), Gaps = 44/208 (21%)

Query: 19  TKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFD 77
           T K  ++ LI+LNRP   NA++ + L  LQ  I+  E ++     IL G  E  FC+G D
Sbjct: 8   TVKNEHMALITLNRPQAANALSAEMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGAD 67

Query: 78  LHELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           L E  +  + ++ +     +Q+ A       +P+IAAI G A+G GL+LAL CDLR   E
Sbjct: 68  LKERIKLKEDQVLESV-SLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATE 126

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
             ++G                         P T L             IP    T +RL 
Sbjct: 127 AAVLGL------------------------PETGLA-----------IIPGAGGT-QRLP 150

Query: 192 QMIGTSRTMDMISLGRHITAREALDWGL 219
           ++IG  +  + I  GR +TA EA + GL
Sbjct: 151 RLIGRGKAKEFIYTGRRVTAHEAKEIGL 178

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P14604|ECHM_RAT Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 47/233 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ LI LNRP  +NA+    ++ L + ++ FE+D      +L G E  F +G D+ E+  
Sbjct: 46  SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ- 104

Query: 84  NPDTKLFDD--FREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
               + F D    +FL         KKP+IAA+ GYA+G G +LA+ CD+ +  E    G
Sbjct: 105 ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG 161

Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                     + LL +                           IP    T +RL + +G 
Sbjct: 162 --------QPEILLGT---------------------------IPGAGGT-QRLTRAVGK 185

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           S  M+M+  G  I+A++A   GL +K+    T V EA+  A +++  S+ ++A
Sbjct: 186 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 238

Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P30084|ECHM_HUMAN Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4

 Score = 77.8 bits (190), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 57/238 (23%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
            + LI LNRP  +NA+    +D L + +K FE+D      +L G +  F +G D+ E+  
Sbjct: 46  TVGLIQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQN 105

Query: 82  ---DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDL-------RFVEE 131
               +   +K    +    Q   KKP+IAA+ GYA G G +LA+ CD+       +F + 
Sbjct: 106 LSFQDCYSSKFLKHWDHLTQ--VKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQP 163

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
            +L+G                                           IP    T +RL 
Sbjct: 164 EILIG------------------------------------------TIPGAGGT-QRLT 180

Query: 192 QMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           + +G S  M+M+  G  I+A++A   GL +K+    T V EA+  A +++  S+ ++A
Sbjct: 181 RAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVVA 238

Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|Q58DM8|ECHM_BOVIN Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 41/230 (17%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD- 82
           N+ LI LNRP  +NA+    +  L + ++ FE+D      +L G E  F +G D+ E+  
Sbjct: 46  NVGLIQLNRPKALNALCNGLIVELNQALQAFEEDPAVGAIVLTGGEKVFAAGADIKEMQS 105

Query: 83  ---ENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
              +N  +  F    + L +  KKP+IAA+ GYA+G G +LA+ CD+ +  E    G   
Sbjct: 106 LTFQNCYSGGFLSHWDQLTR-VKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG--- 161

Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
                  + L+ +                           IP    T +RL + +G S  
Sbjct: 162 -----QPEILIGT---------------------------IPGAGGT-QRLTRAVGKSLA 188

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           M+M+  G  I+A++A   GL +K+    T V EA+  A +++  S+ + A
Sbjct: 189 MEMVLTGDRISAQDAKQAGLVSKIFPVETVVEEAIQCAEKIASNSKIVTA 238

Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P34559|ECHM_CAEEL Probable enoyl-CoA hydratase, mitochondrial OS=Caenorhabditis elegans GN=ech-6 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 43/216 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           N+ LI LNRP  +NA+  + +  L + ++  + D      ++ G E  F +G D+ E+  
Sbjct: 44  NVALIKLNRPKALNALCAQLMTELADALEVLDTDKSVGAIVITGSERAFAAGADIKEMTN 103

Query: 84  NPDTKLFDDFREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
           N     F     FL         KKP+IAA+ G+A+G G +LA+ CD+ +  E    G  
Sbjct: 104 NEFATTFSG--SFLSNWTAVSDVKKPVIAAVNGFALGGGNELAMMCDIIYAGEKARFG-- 159

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
                                  P   +             IP    T +R  +  G S 
Sbjct: 160 ----------------------QPEINIG-----------TIPGAGGT-QRWARAAGKSF 185

Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM 234
            M++   G H+TA+EA + G+ +K+      VGEA+
Sbjct: 186 AMEVCLTGNHVTAQEAKEHGIVSKIFPADQVVGEAV 221

Caenorhabditis elegans (taxid: 6239)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P64014|ECHA6_MYCTU Probable enoyl-CoA hydratase echA6 OS=Mycobacterium tuberculosis GN=echA6 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 47/251 (18%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE---L 81
           +  I L RP++ NA+N + ++ L + I++  D +   + +L GQ   FC+G DL      
Sbjct: 10  VLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAI-VLTGQGTAFCAGADLSGDAFA 68

Query: 82  DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
            + PD +L +  +     P   P++ AI G A+G GL LA+ CDLR V  +    F   +
Sbjct: 69  ADYPD-RLIELHKAMDASP--MPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSK 125

Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
           +          G+ L               DN S           IRRL  ++G  R   
Sbjct: 126 Y----------GLAL---------------DNWS-----------IRRLSSLVGHGRARA 149

Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETC 261
           M+     +TA  AL  G+ N++   GT + +A   A ++++L+   +     VL++    
Sbjct: 150 MLLSAEKLTAEIALHTGMANRI---GT-LADAQAWAAEIARLAPLAIQHAKRVLNDDGAI 205

Query: 262 REEWMSERKHY 272
            E W + ++ +
Sbjct: 206 EEAWPAHKELF 216

Could possibly oxidize fatty acids using specific components.

Mycobacterium tuberculosis (taxid: 1773)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P64015|ECHA6_MYCBO Probable enoyl-CoA hydratase echA6 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=echA6 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 47/251 (18%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE---L 81
           +  I L RP++ NA+N + ++ L + I++  D +   + +L GQ   FC+G DL      
Sbjct: 10  VLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAI-VLTGQGTAFCAGADLSGDAFA 68

Query: 82  DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
            + PD +L +  +     P   P++ AI G A+G GL LA+ CDLR V  +    F   +
Sbjct: 69  ADYPD-RLIELHKAMDASP--MPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSK 125

Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
           +          G+ L               DN S           IRRL  ++G  R   
Sbjct: 126 Y----------GLAL---------------DNWS-----------IRRLSSLVGHGRARA 149

Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETC 261
           M+     +TA  AL  G+ N++   GT + +A   A ++++L+   +     VL++    
Sbjct: 150 MLLSAEKLTAEIALHTGMANRI---GT-LADAQAWAAEIARLAPLAIQHAKRVLNDDGAI 205

Query: 262 REEWMSERKHY 272
            E W + ++ +
Sbjct: 206 EEAWPAHKELF 216

Could possibly oxidize fatty acids using specific components.

Mycobacterium bovis (taxid: 1765)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
328697051	248	PREDICTED: probable enoyl-CoA hydratase-	0.636	0.806	0.378	1e-38
427795379	308	Putative enoyl-coa hydratase, partial [R	0.719	0.733	0.393	7e-38
91076844	291	PREDICTED: similar to enoyl-CoA hydratas	0.621	0.670	0.383	2e-37
322783006	269	hypothetical protein SINV_01098 [Solenop	0.643	0.750	0.371	1e-36
427795433	278	Putative enoyl-coa hydratase, partial [R	0.624	0.705	0.376	1e-35
332028295	267	Carnitinyl-CoA dehydratase [Acromyrmex e	0.614	0.722	0.385	4e-35
307209931	312	Carnitinyl-CoA dehydratase [Harpegnathos	0.646	0.650	0.348	1e-34
391338306	267	PREDICTED: 3-hydroxypropionyl-coenzyme A	0.643	0.756	0.365	1e-34
195112666	386	GI10483 [Drosophila mojavensis] gi|19391	0.643	0.523	0.373	3e-34
195453919	390	GK14405 [Drosophila willistoni] gi|19417	0.643	0.517	0.361	4e-34

>gi|328697051|ref|XP_001943800.2| PREDICTED: probable enoyl-CoA hydratase-like [Acyrthosiphon pisum]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 43/243 (17%)

Query: 13  LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNF 72
           + S+V T K  +ITLISLNRPD  N +N+ TLD L++ I  FE+D  S +A+LYG+ G+F
Sbjct: 42  IYSNVKTFKHQHITLISLNRPDDKNTLNVATLDDLRKAISNFENDPSSTIAVLYGEGGSF 101

Query: 73  CSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
           C+G+D  EL +   ++++DD   F +   +KPIIAA++G+    G DL LWCDLR VEEN
Sbjct: 102 CAGYDPGELSK--ASQVYDD---FFKSHCQKPIIAAVSGFTYNVGFDLCLWCDLRIVEEN 156

Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
            +M                                      + R L I    + ++RL +
Sbjct: 157 AVMA-------------------------------------IDRKLNISNSKIFLKRLLK 179

Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ-SMLADR 251
            +G SRTMD++  GR I ++EA + GL N++V CG++VG+A+  A  + K  Q SM  DR
Sbjct: 180 TVGYSRTMDLLLTGRDIKSKEAFECGLANRVVACGSSVGQAVNMAFNVGKFPQESMNYDR 239

Query: 252 ATV 254
           + +
Sbjct: 240 SVI 242

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795379|gb|JAA63141.1| Putative enoyl-coa hydratase, partial [Rhipicephalus pulchellus]

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 138/239 (57%), Gaps = 13/239 (5%)

Query: 17  VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGF 76
           VC K+   I L+ LNRP+K N +N+ T   L E    FE D+   +A+L+G+ G+FC+G+
Sbjct: 25  VCDKQG-RILLVGLNRPEKRNCLNVATAQQLLEAFHEFERDSSVDVAVLHGKGGSFCAGY 83

Query: 77  DLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
           DL EL E+   +      E      KKP IAA++GYAVG GL+LALWCDLR V+E  +MG
Sbjct: 84  DLSELAEDTPAEWPQCIPE-----TKKPTIAAVSGYAVGAGLELALWCDLRVVDETAVMG 138

Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
            + RRF       +  G+ L      R   + ++     R   +P       RL  +IG 
Sbjct: 139 LFGRRFG------VPXGLELALWCDLRVVDETAVMGLFGRRFGVPLMAGGSARLPALIGL 192

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML-ADRATV 254
           SR +D++  GR ++A+EA + GL N++V+CGTA+G+A++ A  + K  Q  + ADRA V
Sbjct: 193 SRALDLVLTGRPLSAKEAHEIGLANRVVSCGTALGQAVSLAGSIVKFPQGCVQADRAAV 251

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076844|ref|XP_974775.1| PREDICTED: similar to enoyl-CoA hydratase, mitochondrial [Tribolium castaneum] gi|270001819|gb|EEZ98266.1| hypothetical protein TcasGA2_TC000708 [Tribolium castaneum]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 132/245 (53%), Gaps = 50/245 (20%)

Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           +V T+KI  I  I LNRP+K N I+  T D L+E I+ FE+D     A+LYG  GNFC+G
Sbjct: 19  TVLTEKIGEIVTIGLNRPEKRNCIDPSTADLLREAIEDFENDNTLKAAVLYGTGGNFCAG 78

Query: 76  FDLHELDE--------NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLR 127
           +DL  L +        NP+ ++    R F+    KKP++AAI+GYAV  GL+LAL CDLR
Sbjct: 79  YDLKSLSKVDETQIALNPEGQIGPTLR-FI----KKPMVAAISGYAVAGGLELALMCDLR 133

Query: 128 FVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTI 187
            +E+  +MG Y RRF                                     +P  D   
Sbjct: 134 VMEDTAVMGVYCRRF------------------------------------GVPLVDGGT 157

Query: 188 RRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS- 246
            RL  M+G SR +D+I  GR ++A+EA +WG+ N++V CGTA+G+A+  A  + K  Q  
Sbjct: 158 VRLQAMVGLSRALDLILTGRSLSAKEAFEWGVANRIVACGTALGQAIQLANSLVKFPQEC 217

Query: 247 MLADR 251
           +L DR
Sbjct: 218 LLTDR 222

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322783006|gb|EFZ10718.1| hypothetical protein SINV_01098 [Solenopsis invicta]

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 43/245 (17%)

Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           S+  K++  +T I +NRP+K N +++KT   L E +  FE++ ES +A+LYG  GNFC+G
Sbjct: 5   SILVKQMGKVTTIGINRPEKRNCLDVKTAHLLSETLDEFENNNESLVAVLYGVGGNFCAG 64

Query: 76  FDLHEL----DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           +DL E+     +N ++  +        + +KKP+IA+++GYAVG G +LAL CDLR +E+
Sbjct: 65  YDLKEIADYDGDNEESIAYFGPLANRTELSKKPLIASLSGYAVGVGFELALMCDLRIIED 124

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP-TCDVTIRRL 190
              +GF NRRF                                     IP +C  TI RL
Sbjct: 125 TATLGFLNRRF------------------------------------GIPISCGGTI-RL 147

Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ-SMLA 249
             MIG SR +D+I  GR +TA+EA +WG+ N+   CG A+G A+  A  + K  Q S+LA
Sbjct: 148 PAMIGYSRALDLILTGRKVTAQEAFNWGIANRYTCCGAALGTAINLATSLVKFPQKSLLA 207

Query: 250 DRATV 254
           DR + 
Sbjct: 208 DRTST 212

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795433|gb|JAA63168.1| Putative enoyl-coa hydratase, partial [Rhipicephalus pulchellus]

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 129/239 (53%), Gaps = 43/239 (17%)

Query: 17  VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGF 76
           VC K+   I L+ LNRP+K N +N+ T   L E    FE D+   +A+L+G+ G+FC+G+
Sbjct: 25  VCDKQG-RILLVGLNRPEKRNCLNVATAQQLLEAFHEFERDSSVDVAVLHGKGGSFCAGY 83

Query: 77  DLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
           DL EL E+   +      E      KKP IAA++GYAVG GL+LALWCDLR V+E  +MG
Sbjct: 84  DLSELAEDTPAEWPQCIPE-----TKKPTIAAVSGYAVGAGLELALWCDLRVVDETAVMG 138

Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
            + RRF                                     +P       RL  +IG 
Sbjct: 139 LFGRRF------------------------------------GVPLMAGGSARLPALIGL 162

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML-ADRATV 254
           SR +D++  GR ++A+EA + GL N++V+CGTA+G+A++ A  + K  Q  + ADRA V
Sbjct: 163 SRALDLVLTGRPLSAKEAHEIGLANRVVSCGTALGQAVSLAGSIVKFPQGCVQADRAAV 221

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028295|gb|EGI68342.1| Carnitinyl-CoA dehydratase [Acromyrmex echinatior]

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 128/236 (54%), Gaps = 43/236 (18%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE- 83
           IT I +NRP+K N +++ T   L E +  FE++ ES + ILYG  GNFC+G+DL E+ + 
Sbjct: 4   ITTIGINRPEKRNCLDVTTAQLLSETLDEFENNEESLVGILYGVGGNFCAGYDLKEIADY 63

Query: 84  -NPDTKLFDDFREFLQKP--AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
              + +    F     +   +KKP++AA+ GYAVG G +LAL CDLR +EE  ++GF NR
Sbjct: 64  DGENEESIPHFGPLANRTELSKKPLVAALNGYAVGIGFELALMCDLRVIEETAMVGFLNR 123

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP-TCDVTIRRLGQMIGTSRT 199
           RF                                     IP +C  T+ RL  MIG SR 
Sbjct: 124 RF------------------------------------GIPISCGGTV-RLPAMIGYSRA 146

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ-SMLADRATV 254
           MD+I  GR  TA+E  +WG+ +K  +CG A+G A+T A  + K  Q S+LADRA+ 
Sbjct: 147 MDLILTGRLATAQEIFNWGIAHKYTSCGAALGAAVTLANSLVKFPQKSLLADRASA 202

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209931|gb|EFN86709.1| Carnitinyl-CoA dehydratase [Harpegnathos saltator]

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 41/244 (16%)

Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           ++   +I  +T I +NRP+K N++++ T   L E +  FE + E+ +A+L+G  GNFC+G
Sbjct: 40  TIVVSRIDRVTTIGINRPEKQNSLDITTARLLSEALDEFESNEEAAVAVLHGIGGNFCAG 99

Query: 76  FDLHEL----DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           +DLHE+     EN ++        +  + +KKP++A+++GY +G G +LAL CDLR VE+
Sbjct: 100 YDLHEIANYDGENEESLPHFGPLAYRNELSKKPLVASLSGYTIGAGFELALMCDLRVVED 159

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
             ++GF NRRF      +LS G V                                 RL 
Sbjct: 160 TAMIGFLNRRFGI---PILSGGTV---------------------------------RLP 183

Query: 192 QMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL-SQSMLAD 250
            MIG SR M++I  GR ++A E  +WGL NK+ + GTA+G A+  A  + K   +++LAD
Sbjct: 184 AMIGYSRAMELILTGRLLSAEEMFNWGLANKITSYGTALGSAVNLAKSLVKFPPKTLLAD 243

Query: 251 RATV 254
           RA+ 
Sbjct: 244 RAST 247

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391338306|ref|XP_003743500.1| PREDICTED: 3-hydroxypropionyl-coenzyme A dehydratase-like [Metaseiulus occidentalis]

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 132/249 (53%), Gaps = 47/249 (18%)

Query: 11  LRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEG 70
           +R  + V  + I NI LI +NRP+K N +N +T D L E  + F+ D+   +A+LYG  G
Sbjct: 1   MRAKTLVQIETINNIRLIGINRPEKKNCVNSRTADLLLEAFEEFDRDSSVNVAVLYGIGG 60

Query: 71  NFCSGFDLHELDENPDTKLFDDFREFLQKP-------AKKPIIAAITGYAVGQGLDLALW 123
            FC+G+DL E     D KL + F+   ++P         KP +AA+ G+AV  GL+LALW
Sbjct: 61  TFCAGYDLEEASR-ADQKLMEKFK--TRRPMGPSGMLTSKPTVAAVQGFAVAGGLELALW 117

Query: 124 CDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTC 183
           CDLR +EE  ++G Y RRF                                     IP  
Sbjct: 118 CDLRVMEETAVVGVYCRRF------------------------------------GIPLI 141

Query: 184 DVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243
           D    RL ++IG SR MD+I  GR + A+EAL  GL N++V+CGT +G+A+  A ++++ 
Sbjct: 142 DGGTVRLPKLIGLSRAMDLILTGRPVDAQEALQMGLANRVVSCGTGLGQAVDLAHRIARF 201

Query: 244 SQSML-ADR 251
            Q  + ADR
Sbjct: 202 PQECVKADR 210

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112666|ref|XP_002000893.1| GI10483 [Drosophila mojavensis] gi|193917487|gb|EDW16354.1| GI10483 [Drosophila mojavensis]

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 128/252 (50%), Gaps = 50/252 (19%)

Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           S+  +K  NITLI +NRP + NAI+  T   L E    FE D  SP+A+LYG  G+FCSG
Sbjct: 48  SIIIEKDKNITLIGINRPQQRNAIDSTTASKLCEAFSAFEADDTSPVAVLYGVGGSFCSG 107

Query: 76  FDLHELDENPDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCD 125
           FD+ E+  +   ++  D    L +P           KKP+I  I GY +  GL+LAL CD
Sbjct: 108 FDILEISTDEKEEISVD---ILMRPEGSVGPTRRHIKKPVICGINGYCIANGLELALMCD 164

Query: 126 LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV 185
           LR +EE+ ++GF+NRRF                                     +P  D 
Sbjct: 165 LRVMEESAVLGFFNRRF------------------------------------GVPMLDG 188

Query: 186 TIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
              RL  MIG SR +D+I  GR + ++EA D GL N++V  GTA+G A+  A  +SK  Q
Sbjct: 189 GTVRLPAMIGLSRALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGHALELAACLSKFPQ 248

Query: 246 SMLA-DRATVLS 256
             L  DR +V S
Sbjct: 249 RALNHDRNSVYS 260

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453919|ref|XP_002074002.1| GK14405 [Drosophila willistoni] gi|194170087|gb|EDW84988.1| GK14405 [Drosophila willistoni]

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 130/252 (51%), Gaps = 50/252 (19%)

Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           ++  +K  NITLI +NRP + NAI+  T   L +    FE D  SP+A+LYG  G+FCSG
Sbjct: 50  TILVEKDKNITLIGINRPQQRNAIDSSTASQLCDAFANFEQDETSPVAVLYGIGGSFCSG 109

Query: 76  FDLHELDENPDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCD 125
           FD+ E+  +   ++  D    L +P           KKP++ +I GY +G GL+LAL CD
Sbjct: 110 FDILEMSTDEKEEISVD---ILMRPEGSVGPTRRQIKKPVVCSINGYCIGNGLELALMCD 166

Query: 126 LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV 185
           LR +EE+ ++GF+NRRF                                     +P  D 
Sbjct: 167 LRVMEESAVLGFFNRRF------------------------------------GVPMLDG 190

Query: 186 TIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
              RL  MIG SR +D+I  GR + ++EA D GL N++V  GTA+G A+  A  ++K  Q
Sbjct: 191 GTVRLPAMIGLSRALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGNAVELATCLAKFPQ 250

Query: 246 SMLA-DRATVLS 256
             L  DR +V S
Sbjct: 251 RALNHDRNSVYS 262

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
FB|FBgn0039531	326	CG5611 [Drosophila melanogaste	0.420	0.404	0.388	1.3e-32
UNIPROTKB|Q7D9G0	263	echA5 "Enoyl-coA hydratase/iso	0.372	0.444	0.393	3.7e-29
WB|WBGene00001152	258	ech-3 [Caenorhabditis elegans	0.372	0.453	0.357	1.4e-27
DICTYBASE|DDB_G0276151	271	DDB_G0276151 "enoyl-CoA hydrat	0.378	0.439	0.370	8.3e-26
UNIPROTKB|A4YI89	259	Msed_2001 "3-hydroxypropionyl-	0.375	0.455	0.406	1e-23
FB|FBgn0038049	378	CG5844 [Drosophila melanogaste	0.404	0.335	0.425	1.8e-23
ASPGD|ASPL0000052820	296	AN0180 [Emericella nidulans (t	0.229	0.243	0.402	2.4e-23
ZFIN|ZDB-GENE-041010-72	309	zgc:101569 "zgc:101569" [Danio	0.375	0.381	0.432	1.3e-20
DICTYBASE|DDB_G0285071	277	echs1 "enoyl-CoA hydratase" [D	0.372	0.422	0.336	1.2e-17
UNIPROTKB|F1SAC1	289	ECHS1 "Uncharacterized protein	0.366	0.397	0.325	2e-17

FB|FBgn0039531 CG5611 [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 54/139 (38%), Positives = 82/139 (58%)

Query:    16 SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
             +V  +K  +ITLI LNR  + N+I+  T + L E I +FE D  SP+ +LYG  G+FC+G
Sbjct:    42 TVLVEKDSHITLIGLNREQQRNSIDANTAEQLTEAISQFEADDTSPVGVLYGIGGSFCAG 101

Query:    76 FDLHELDENPDTKLFDDFREF------LQKPAKKPIIAAITGYAVGQGLDLALWCDLRFV 129
             +DL EL+        +            ++  +KP++  I+G+ V  GL+LAL CDLR +
Sbjct:   102 YDLEELEAEAQRGSLNFLLRHEGSVGPTRRHLRKPLVCGISGFCVAGGLELALMCDLRVM 161

Query:   130 EENVLMGFYNRRF-VYLKD 147
             E+  ++GF+NRR  V L D
Sbjct:   162 EDTAVLGFFNRRLGVPLSD 180

GO:0008416 "delta5-delta2,4-dienoyl-CoA isomerase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q7D9G0 echA5 "Enoyl-coA hydratase/isomerase family protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 217 (81.4 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 48/122 (39%), Positives = 70/122 (57%)

Query:    25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
             +T + LNRP   NA+N  T  AL    ++F+ D  + +A+L+G  G FC+G DL      
Sbjct:    13 VTTVILNRPASRNAVNGPTAAALCAAFEQFDRDDAASVAVLWGAGGTFCAGADLKAFG-T 71

Query:    85 PDTKLFDDFREFLQKPAK----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
             P+             P++    KP+IAA++GYAV  GL+LALWCDLR  EE+ + G + R
Sbjct:    72 PEANSVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCR 131

Query:   141 RF 142
             R+
Sbjct:   132 RW 133

GO:0040007 "growth" evidence=IMP

WB|WBGene00001152 ech-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 195 (73.7 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 44/123 (35%), Positives = 71/123 (57%)

Query:    25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
             + LI +NR +K N +N  T   L +  ++F +D+    A+LYG+ G FC+G+DL  + + 
Sbjct:    15 VFLIGINRANKKNCVNHATALQLIDAFEKFNEDSTMKTAVLYGEGGTFCAGYDLESVSKA 74

Query:    85 PDTKLFDDFREFLQK--PA----KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
                ++ +DF +  +   P+    KKP+IAAI G+AV  GL+L+L  DLR    +   G +
Sbjct:    75 EHQEVSEDFCDKYRYMGPSIMKIKKPLIAAIEGFAVAGGLELSLMADLRVSSPSAKFGVF 134

Query:   139 NRR 141
              RR
Sbjct:   135 CRR 137

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0276151 DDB_G0276151 "enoyl-CoA hydratase/isomerase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 199 (75.1 bits), Expect = 8.3e-26, Sum P(2) = 8.3e-26
 Identities = 47/127 (37%), Positives = 68/127 (53%)

Query:    24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
             NI +I +NR    N+IN +T D L    K F+ D    ++IL G   NFCSG DL E+ +
Sbjct:    19 NILIIKINRNSSRNSINKETADDLYNIFKEFDKDDNLLISILCGNGDNFCSGADLKEIPK 78

Query:    84 NPDT--KLFD----DFREF--LQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
               ++  K+      D+      +    KP+I +I GY V  GL+LALWCDLR   ++   
Sbjct:    79 GIESGNKILSPKETDYAPLGCTRLQLSKPVICSIDGYCVAGGLELALWCDLRVATKSSTF 138

Query:   136 GFYNRRF 142
             G + RR+
Sbjct:   139 GVFCRRW 145

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|A4YI89 Msed_2001 "3-hydroxypropionyl-coenzyme A dehydratase" [Metallosphaera sedula DSM 5348 (taxid:399549)]

 Score = 212 (79.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 50/123 (40%), Positives = 70/123 (56%)

Query:    19 TKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL 78
             TKK  N+  I+LNRPDK+NA+N K L+ L   + + E D E  + I+ G+   FC+G D+
Sbjct:     8 TKKEGNLFWITLNRPDKLNALNAKLLEELDRAVSQAESDPEIRVIIITGKGKAFCAGADI 67

Query:    79 HELDE-NPDT--KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
              + ++  P    K     RE + K     KP IA I GYA+G GL+LAL CD+R   E  
Sbjct:    68 TQFNQLTPAEAWKFSKKGREIMDKIEALSKPTIAMINGYALGGGLELALACDIRIAAEEA 127

Query:   134 LMG 136
              +G
Sbjct:   128 QLG 130

GO:0043956 "3-hydroxypropionyl-CoA dehydratase activity" evidence=IDA

FB|FBgn0038049 CG5844 [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 57/134 (42%), Positives = 82/134 (61%)

Query:    16 SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
             ++  +K  NITLI +NRP + NAI+  T   L +    FE D  SP+A+LYG  G+FCSG
Sbjct:    48 NILVEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLYGVGGSFCSG 107

Query:    76 FDLHEL--DENPDTKLFDDFREF-----LQKPAKKPIIAAITGYAVGQGLDLALWCDLRF 128
             FD+ E+  DE  +  +    R        ++  KKP++  I GY +  GL+LAL CDLR 
Sbjct:   108 FDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGINGYCIANGLELALMCDLRV 167

Query:   129 VEENVLMGFYNRRF 142
             +EE+ ++GF+NRRF
Sbjct:   168 MEESAVLGFFNRRF 181

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=IMP

ASPGD|ASPL0000052820 AN0180 [Emericella nidulans (taxid:162425)]

 Score = 133 (51.9 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
 Identities = 29/72 (40%), Positives = 39/72 (54%)

Query:    10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE 69
             M +L S   TK    IT I++NRP + NAI+  T   L      FE D    + + +G  
Sbjct:     1 MAQLSSIQSTKTPSGITTITINRPHRRNAIDGPTAQKLTAAFLDFEADASQKVCVFHGAN 60

Query:    70 GNFCSGFDLHEL 81
             G FC+GFDLHE+
Sbjct:    61 GTFCAGFDLHEV 72

GO:0005575 "cellular_component" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

ZFIN|ZDB-GENE-041010-72 zgc:101569 "zgc:101569" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 54/125 (43%), Positives = 76/125 (60%)

Query:    25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
             + LI +NRP+  NA+N +T   L E +  F+ D    +A+LYG  GNFC+GFDL EL   
Sbjct:    57 VMLIGINRPEARNAVNRETAQRLTEELSAFDQDDSLNVAVLYGVGGNFCAGFDLKELAHG 116

Query:    85 PDT-KLFDDFREFL--QKPAK----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
              D+ +L  D         P++    KP+IAA++GYAV  GL+LAL  D+R  EE+ +MG 
Sbjct:   117 SDSLELEQDVSSGPGPMGPSRMRLSKPLIAAVSGYAVAGGLELALLADMRVAEESSIMGV 176

Query:   138 YNRRF 142
             + RRF
Sbjct:   177 FCRRF 181

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0285071 echs1 "enoyl-CoA hydratase" [Dictyostelium discoideum (taxid:44689)]

 Score = 175 (66.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 41/122 (33%), Positives = 69/122 (56%)

Query:    19 TKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL 78
             T+K   + L++LNRP  +NA++   +  +   +K F++D +    I+ G E  F +G D+
Sbjct:    28 TEKKGRVGLVTLNRPKSLNALSDGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGADI 87

Query:    79 HELDEN--PDTKLFDDFREF--LQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
              E+++   PD    D   ++  L K  +KPIIAA+ GYA+G G +LA+ CD+    E  +
Sbjct:    88 KEMEKVTLPDAYNNDLLAQWHDLTK-IRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAV 146

Query:   135 MG 136
              G
Sbjct:   147 FG 148

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA;ISS

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0016829 "lyase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SAC1 ECHS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 160 (61.4 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
 Identities = 39/120 (32%), Positives = 62/120 (51%)

Query:    21 KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE 80
             K  N+ LI LNRP  +NA+    +  L + ++ FE+D      +L G E  F +G D+ E
Sbjct:    43 KSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKE 102

Query:    81 LDENPDTKLFDD-FR---EFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
             +        +   F    + L +  +KP+IAA+ GYA+G G +LA+ CD+ +  E    G
Sbjct:   103 MQNQTFQDCYSGGFLSHWDHLSR-VRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG 161

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4YI89	HPCD_METS5	4, ., 2, ., 1, ., 1, 1, 6	0.3012	0.6305	0.7644	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	314
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	1e-48
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	4e-39
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	1e-36
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	5e-28
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	4e-26
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	3e-23
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	8e-22
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	1e-20
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	2e-20
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	2e-19
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	4e-18
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	6e-18
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	1e-17
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	5e-17
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	4e-16
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	5e-16
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	5e-16
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	1e-15
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	3e-15
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	4e-15
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	6e-15
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	1e-14
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	1e-14
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	3e-14
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	3e-14
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	3e-14
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	5e-14
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	6e-14
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	6e-14
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	1e-13
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	2e-13
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	3e-13
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	2e-12
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	3e-12
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	7e-12
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	2e-11
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	5e-11
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	6e-11
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	1e-10
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	3e-10
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	1e-09
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	3e-09
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	4e-09
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	7e-09
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-08
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	2e-08
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	2e-08
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	3e-08
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	4e-08
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	7e-08
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	1e-07
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-07
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	2e-07
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-07
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	3e-07
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	6e-07
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	6e-07
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	6e-07
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-06
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	2e-06
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	2e-06
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	3e-06
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	4e-06
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	5e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	7e-06
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	3e-05
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	6e-05
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	7e-05
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	1e-04
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-04
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	1e-04
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	7e-04
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	0.003

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score =  162 bits (413), Expect = 1e-48
 Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 65/260 (25%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL------ 78
           +T + LNRP+  NA++  T  AL +  + F+ D  + +A+L+G  G FC+G DL      
Sbjct: 13  VTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTG 72

Query: 79  --HELDENPD-----TKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
             + L  + D     +++             KP+IAA++GYAV  GL+LALWCDLR  EE
Sbjct: 73  RGNRLHPSGDGPMGPSRMR----------LSKPVIAAVSGYAVAGGLELALWCDLRVAEE 122

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
           + + G + RR+          GV                          P  D    RL 
Sbjct: 123 DAVFGVFCRRW----------GV--------------------------PLIDGGTVRLP 146

Query: 192 QMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLAD 250
           ++IG SR MD+I  GR + A EAL  GL N++V  G A   A   A +++   Q+ + AD
Sbjct: 147 RLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRAD 206

Query: 251 RATV-----LSECETCREEW 265
           R +      L E      E+
Sbjct: 207 RLSALEQWGLPEEAALANEF 226

Length = 254

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  136 bits (344), Expect = 4e-39
 Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 43/221 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I+LNRP+K NA++L+ LD L   +   E D +  + +L G    FC+G DL EL  
Sbjct: 8   GVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAA 67

Query: 84  NPD-----TKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
             D          + +E L+      KP+IAA+ G A+G GL+LAL CD+R   E+   G
Sbjct: 68  LSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFG 127

Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                 V                                  L +       +RL +++G 
Sbjct: 128 L---PEV---------------------------------KLGLVPGGGGTQRLPRLVGP 151

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
           +R  +++  GR I+A EAL+ GL +++V     +  A+  A
Sbjct: 152 ARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA 192

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  131 bits (332), Expect = 1e-36
 Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 46/237 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I +I+LNRP+K+NA+NL+ LD L E +   E D +  + +L G    F +G DL EL  
Sbjct: 14  GIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS 73

Query: 84  NPDTKLFDDFREFLQ------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
             D    ++  +  Q          KP+IAA+ GYA+G GL+LAL CD+R   E+   G 
Sbjct: 74  PEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGL 133

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                                   P              +L +   D   +RL +++G  
Sbjct: 134 ------------------------PEV------------NLGLLPGDGGTQRLPRLLGRG 157

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS-KLSQSMLADRAT 253
           R  +++  G  I+A EAL+ GL +++V       E + RA++++ +L+   LA  AT
Sbjct: 158 RAKELLLTGEPISAAEALELGLVDEVV---PDAEELLERALELARRLAAPPLALAAT 211

Length = 257

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  108 bits (272), Expect = 5e-28
 Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 45/236 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + +I L+RP+ +NA++ + L  L + +++ E D      +L G  G F +G D+ E+  
Sbjct: 7   GVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAA 66

Query: 84  NPDTKLFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
            P  +    F    Q          KP+IAA+ GYA+G GL+LAL CD R   +N   G 
Sbjct: 67  EPLAQQ-AQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFG- 124

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                                  +P  +L             IP    T  RL ++IG S
Sbjct: 125 -----------------------LPEVKLG-----------IIPGAGGTQ-RLPRIIGVS 149

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
             ++M+  GR I A+EAL  GL +K+V     V EA+  A ++    +  LA  A 
Sbjct: 150 AALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRL--ADKPPLALAAL 203

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  103 bits (260), Expect = 4e-26
 Identities = 62/247 (25%), Positives = 98/247 (39%), Gaps = 47/247 (19%)

Query: 9   AMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ 68
            M+  +       +L IT+   NRPDK NA+      AL + ++    D    + +L G 
Sbjct: 2   TMVTDLLVELEDGVLTITI---NRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGA 58

Query: 69  EGNFCSGFDLHELDENPDTK--LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWC 124
              F +G D+ +  + P            FL+      KP++AA+ G AVG G+ LAL C
Sbjct: 59  GRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALAC 118

Query: 125 DLRFVEEN--VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPT 182
           DL +  E+    + F                           +L       L  D     
Sbjct: 119 DLVYASESAKFSLPF--------------------------AKL------GLCPDAGGSA 146

Query: 183 CDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
                  L ++IG +R  +M+ LG  ++A EAL  GL N++V       EA  +A +++ 
Sbjct: 147 ------LLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAA 200

Query: 243 LSQSMLA 249
              S L 
Sbjct: 201 GPASALR 207

Length = 259

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 95.9 bits (239), Expect = 3e-23
 Identities = 74/254 (29%), Positives = 106/254 (41%), Gaps = 44/254 (17%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHEL-- 81
           +T+++LNRP+ +NA++L     L+E    F  D E  +AI+ G  +  F +G DL E   
Sbjct: 14  VTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAA 73

Query: 82  --DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
                     F       +    KPIIAA+ G A+G G +LAL CDL    EN       
Sbjct: 74  GGKRGWPESGFGGLTS--RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN------- 124

Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
                            +AL  PR  L                    + RL + IG  R 
Sbjct: 125 ---------------ATFALPEPRVGL-------------AALAG-GLHRLPRQIGLKRA 155

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ-SMLADRATVLSEC 258
           M MI  GR +TARE L+ G  N++V  G  +  A   A  +   S  S+ A +  V    
Sbjct: 156 MGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGL 215

Query: 259 ETCREEWMSERKHY 272
           E   EE ++ ++ Y
Sbjct: 216 EVSLEEAITAQRDY 229

Length = 259

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 92.0 bits (229), Expect = 8e-22
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 41/217 (18%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
            + +I++NRP+  NA+N      L   +   + D +  + IL G  G FC+G DL     
Sbjct: 12  RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFAR 71

Query: 82  DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
            E P       F    ++P +KP+IAA+ GYA+  G +LAL CDL     +   G     
Sbjct: 72  GERPSIP-GRGFGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPE-- 128

Query: 142 FVYLKDSLLS-SGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
              +K  L++  G +L                                RL + I     M
Sbjct: 129 ---VKRGLVAAGGGLL--------------------------------RLPRRIPYHIAM 153

Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
           ++   G  +TA  A + GL N++   G A+  A+  A
Sbjct: 154 ELALTGDMLTAERAHELGLVNRLTEPGQALDAALELA 190

Length = 254

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 88.9 bits (221), Expect = 1e-20
 Identities = 61/235 (25%), Positives = 96/235 (40%), Gaps = 49/235 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LNRP+  NA++     AL   +   + D +  + +L G +  FC+G DL EL  +
Sbjct: 14  VRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGD 73

Query: 85  PDTKLFDDFRE---FLQKPA-KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
             +               PA +KP+I AI G AV  GL+LAL CD       +L+     
Sbjct: 74  G-SAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACD-------ILIASERA 125

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
           RF                             D  +R   +P   +++ RL Q +G  R  
Sbjct: 126 RFA----------------------------DTHARVGILPGWGLSV-RLPQKVGIGRAR 156

Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA-DRATV 254
            M   G  + A +AL  GL  ++V       E + RA +   L+ S+   + A V
Sbjct: 157 RMSLTGDFLDAADALRAGLVTEVV----PHDELLPRARR---LAASIAGNNPAAV 204

Length = 258

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 88.6 bits (220), Expect = 2e-20
 Identities = 68/236 (28%), Positives = 97/236 (41%), Gaps = 67/236 (28%)

Query: 22  ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHE 80
           IL ITL   +RP K NAI+ KT  A+ E    F DD E  +AI+ G  E  F +G+DL  
Sbjct: 13  ILEITL---DRP-KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKA 68

Query: 81  LDEN--PD-----------TKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLR 127
             E   PD           T++FD           KP+IAA+ GYA G G +LAL  D  
Sbjct: 69  AAEGEAPDADFGPGGFAGLTEIFD---------LDKPVIAAVNGYAFGGGFELALAADFI 119

Query: 128 FVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTI 187
              +N        +           G+V                     D         +
Sbjct: 120 VCADNASFALPEAK----------LGIV--------------------PDSG------GV 143

Query: 188 RRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243
            RL + +  +   +M+  GR + A EAL WG+ N++V       E M RA ++++ 
Sbjct: 144 LRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVV----PQAELMDRARELAQQ 195

Length = 261

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 85.6 bits (212), Expect = 2e-19
 Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 50/240 (20%)

Query: 10  MLRLVS-SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ 68
           ML+ +S    T    ++  I+LNRP   NA++L  L+ LQ  + +  ++    + IL G 
Sbjct: 1   MLQNISVDYVTP---HVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGA 57

Query: 69  -EGNFCSGFDLHE---LDENPDTKLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLAL 122
            E  FC+G DL E   ++E          R  ++   +  +P+IAAI G A+G GL+LAL
Sbjct: 58  GEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELAL 117

Query: 123 WCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPT 182
            CD R   E+  +G                        +  T L             IP 
Sbjct: 118 ACDFRIAAESASLG------------------------LTETTLA-----------IIPG 142

Query: 183 CDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
              T +RL ++IG  R  ++I  GR I+A+EA + GL   +V           +AI++++
Sbjct: 143 AGGT-QRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVV----PAHLLEEKAIEIAE 197

Length = 260

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 81.8 bits (202), Expect = 4e-18
 Identities = 80/285 (28%), Positives = 121/285 (42%), Gaps = 57/285 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHE--- 80
           I  + L+RP+  NAI  + L  L+   ++ + D  + + +L     G FC+G DL E   
Sbjct: 5   IVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRK 64

Query: 81  LDENPDTKLFDDFRE-FLQKPAKK-PIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
           +  +   K  +  R  F    A   P IA + G A+G GL+LAL CDLR   E  + G  
Sbjct: 65  MSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFG-- 122

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
                                 +P T L             IP    T +RL +++G SR
Sbjct: 123 ----------------------LPETGLA-----------IIPGAGGT-QRLPRLVGRSR 148

Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA----------IQMSK--LSQS 246
             ++I  GR I AREA   GL N  V  G A  +A+  A          I+M+K  +++ 
Sbjct: 149 AKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEG 208

Query: 247 MLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNG 291
              D A+ L   E C E+ +  +    G++    F +K+K    G
Sbjct: 209 SEVDMASGLEIEEECYEQVLKTKDRLEGLA---AFAEKRKPVYTG 250

Length = 251

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 69/283 (24%), Positives = 116/283 (40%), Gaps = 64/283 (22%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCS-GFDLHELDE 83
           + +I+LN P   NA++ + L  L E + + E D    + +++G EG F S G D+ E   
Sbjct: 12  VAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHG-EGRFFSAGADIKEFTS 69

Query: 84  NPDTK-----------LFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
             + +            F+   +F      KP+IAAI G A+G GL+LA+ C +RF  E+
Sbjct: 70  VTEAEQATELAQLGQVTFERVEKF-----SKPVIAAIHGAALGGGLELAMSCHIRFATES 124

Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
             +G                        +P   L             IP    T +RL +
Sbjct: 125 AKLG------------------------LPELNLG-----------LIPGFAGT-QRLPR 148

Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS-QSMLADR 251
            +G ++ ++M+     IT  EAL WGL N +    T + +A   A +++  S  +  A  
Sbjct: 149 YVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVL 208

Query: 252 ATVLSECETCREEWMSERKHYIGISFELK--------FLQKKK 286
             + +   +   E +       G  F  +        FL+K+K
Sbjct: 209 ELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRK 251

Length = 257

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 63/236 (26%), Positives = 95/236 (40%), Gaps = 60/236 (25%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I LNRP K NA+N   + AL+    R  +   +   +L+G+  +FC+G DL EL E
Sbjct: 11  GVATIGLNRPAKRNALNDGLIAALRAAFARLPEGVRA--VVLHGEGDHFCAGLDLSELRE 68

Query: 84  NPDTKLFDDFREFLQ------------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
                   D  E +             +  + P+IAA+ G  VG GL+LA    +R  +E
Sbjct: 69  R-------DAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADE 121

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
           +                        +AL  P  Q     R        I        R+ 
Sbjct: 122 S----------------------TYFAL--PEGQ-----R-------GIFVGGGGSVRVP 145

Query: 192 QMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM---TRAIQMSKLS 244
           ++IG +R  DM+  GR   A+E    GL   +V  G A+ +AM    R  Q + L+
Sbjct: 146 RLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLT 201

Length = 255

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 79.0 bits (195), Expect = 5e-17
 Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 53/225 (23%)

Query: 26  TLI-SLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           TLI ++NRP+  NA++ + L  + +   R ++D +    IL G  G FC+G DL    + 
Sbjct: 15  TLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKK 74

Query: 85  PDTKLFDDFREFLQKPAK-----------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           P     D F++    P++           KP+IAA+ G A+  G ++    D+R   E+ 
Sbjct: 75  PPG---DSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESA 131

Query: 134 LMG-FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
             G    +  ++    +  S V                                  RL +
Sbjct: 132 KFGISEAKWSLF---PMGGSAV----------------------------------RLVR 154

Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
            I  +   D++  GRHITA EA + GL   +V  G A+ +A+  A
Sbjct: 155 QIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELA 199

Length = 263

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 64/210 (30%), Positives = 90/210 (42%), Gaps = 45/210 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAI-LYGQEGNFCSGFDLHE-- 80
            +  I L RP++ NA+N +  + L+E +++  D  ES  AI L GQ   FC+G DL    
Sbjct: 9   QVLTIELQRPERRNALNAELCEELREAVRKAVD--ESARAIVLTGQGTVFCAGADLSGDV 66

Query: 81  -LDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
             D+ PD  L +        P   P+IAAI G A+G GL LA+ CDLR V          
Sbjct: 67  YADDFPD-ALIEMLHAIDAAPV--PVIAAINGPAIGAGLQLAMACDLRVVAPEA------ 117

Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
             F                   P  +   +L DN            TIRRL  ++G  R 
Sbjct: 118 -YF-----------------QFPVAKYGIAL-DNW-----------TIRRLSSLVGGGRA 147

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTA 229
             M+     +TA +AL  G+ N++     A
Sbjct: 148 RAMLLGAEKLTAEQALATGMANRIGTLADA 177

Length = 243

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 76.0 bits (187), Expect = 5e-16
 Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 45/233 (19%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + L++LNRP+  NA+N   L  L   ++    DT   + ++ G    F +G DL+E+ E 
Sbjct: 12  VLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK 71

Query: 85  PDTKLFDDFREFL-QKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
                 +D R  L Q+     KP+IAA+ GYA+G G +LAL CD+    EN   G     
Sbjct: 72  DLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFG----- 126

Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
                              +P   L             +P    T +RL + +G S    
Sbjct: 127 -------------------LPEITLG-----------IMPGAGGT-QRLIRSVGKSLASQ 155

Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL--SQSMLADRA 252
           M+  G  ITA++A   GL +++      +   + RA+Q++      S LA RA
Sbjct: 156 MVLTGESITAQQAQQAGLVSEV--FPPEL--TLERALQLASKIARHSPLALRA 204

Length = 255

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 75.9 bits (187), Expect = 5e-16
 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 46/226 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHEL- 81
           +I ++++NRP  +NA+N +TL  L   +   E+D      IL G  E  F +G D+ E+ 
Sbjct: 13  HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72

Query: 82  DENP-DTKLFDD-----FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
           D N  + + F       FR+   +   KP+IAAI G+A+G G +L++ CD+R   E    
Sbjct: 73  DLNEEEGRKFGLLGNKVFRKL--ENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKF 130

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G                         P   L              P    T +RL +++G
Sbjct: 131 G------------------------QPEVGLG-----------ITPGFGGT-QRLARIVG 154

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS 241
             +  ++I  G  I A EAL  GL NK+V     + EA   A +++
Sbjct: 155 PGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIA 200

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 49/243 (20%)

Query: 27  LISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD 86
           LI+LNRP  +NA+N   +D L   +  F+ D      ++ G E  F +G D+ E+ +   
Sbjct: 16  LITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF 75

Query: 87  TKLFD-DFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
             ++  D+    +K A+  KP+IAA+ GYA+G G +LA+ CD+    +    G       
Sbjct: 76  MDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFG------- 128

Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
                             P  +L             +P    + +RL + +G ++ MD+ 
Sbjct: 129 -----------------QPEIKLG-----------VLPGMGGS-QRLTRAVGKAKAMDLC 159

Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAM---TRAIQMSKLSQSMLA----DRA--TV 254
             GR + A EA   GL +++V     + EA+   T     S L   M+A    +RA  T 
Sbjct: 160 LTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS-LPAVMMAKEAVNRAYETT 218

Query: 255 LSE 257
           L+E
Sbjct: 219 LAE 221

Length = 257

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
             +++++RPDK+NA+NL+  +     +K+   D +  + I+ G+   FC G DL E   +
Sbjct: 10  YAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD 69

Query: 85  PDTKLFDDFREFLQ--KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV--LMGFYN 139
               L + F   ++  + + K  I+AI G   G  + +AL  D +F   +V  +  F  
Sbjct: 70  FAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQR 128

Length = 248

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 66/259 (25%), Positives = 98/259 (37%), Gaps = 61/259 (23%)

Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-- 85
           + LNRPDK+NA++    + L   IKR + D      IL G+ G FC+G D+  +  +P  
Sbjct: 16  VRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGN 75

Query: 86  DTKLFDDFREFLQKPAKK----------PIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
             KL           A++          P+IAA+ G   G GL +AL  D+R        
Sbjct: 76  AVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAP---- 131

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
                      D+ LS     + L VP      SLR  + +D+A                
Sbjct: 132 -----------DTKLSIMEAKWGL-VPDMAGTVSLRGLVRKDVA---------------- 163

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR--------AIQMSKLSQSM 247
                ++    R  +A EAL+ GL   + +   A   A+ R        AI  +K     
Sbjct: 164 ----RELTYTARVFSAEEALELGLVTHVSDDPLAAALALAREIAQRSPDAIAAAK----R 215

Query: 248 LADRATVLSECET-CREEW 265
           L +R+   S      RE  
Sbjct: 216 LINRSWTASVRALLARESV 234

Length = 262

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 73.0 bits (179), Expect = 6e-15
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 45/223 (20%)

Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD- 86
           ++LNRPDK+N+   +    L+E ++R E D    L +L G    FC+G DL E +  P  
Sbjct: 12  LTLNRPDKLNSFTAEMHLELREALERVERDDARAL-MLTGAGRGFCAGQDLSERNPTPGG 70

Query: 87  -----TKLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
                  +   +   +++      P++ A+ G A G G +LAL CD+    E+       
Sbjct: 71  APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESA------ 124

Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
            RF+                               ++   IP    T   L +++G +R 
Sbjct: 125 -RFI----------------------------QAFAKIGLIPDSGGTW-SLPRLVGRARA 154

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
           M +  LG  + AR A  WGL  ++V+    + EA   A+ ++ 
Sbjct: 155 MGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAA 197

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 61/234 (26%), Positives = 96/234 (41%), Gaps = 62/234 (26%)

Query: 25  ITLISLNRPDKINAINLKTLDALQE-----NIKRFEDDTESPLAILYGQEGNFCSGFDLH 79
           +  I+LNRP++ N +   T ++  E         + DD ++   +L G  GNFCSG D+H
Sbjct: 27  VATITLNRPERKNPL---TFESYAELRDLFRELVYADDVKA--VVLTGAGGNFCSGGDVH 81

Query: 80  ELDENPDTKLFDDFREFLQ------------KPAKKPIIAAITGYAVGQGLDLALWCDLR 127
           E+   P TK+  D  E L             +   +PIIAA+ G   G G  LA+  DLR
Sbjct: 82  EIIG-PLTKM--DMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLR 138

Query: 128 FVEENVLMGF-YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
               +    F + R  V L  + + +  +L     PR                       
Sbjct: 139 LGTPSAKTAFLFTR--VGLAGADMGACALL-----PR----------------------- 168

Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240
                 +IG  R  +++  GR ++A E   WG  N++V     + EA   A ++
Sbjct: 169 ------IIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRL 216

Length = 277

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 55/229 (24%)

Query: 25  ITLISLNRPDKINAINLKT-LDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
           I  +++NRP+  NA++    +DAL         D      IL G    F SG ++ ++  
Sbjct: 13  IVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRA 72

Query: 82  ----DENPDTKLFDDFREFLQKPAKK------PIIAAITGYAVGQGLDLALWCDLRFVEE 131
                      +   +R  +Q+          P+IAA+ G A+G G DLA  CD+R   E
Sbjct: 73  RVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASE 132

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVL---YALHVPRTQLKHSLRDNLSRDLAIPTCDVTIR 188
                          +S +  G++     A  +PR                         
Sbjct: 133 TARFA----------ESFVKLGLIPGDGGAWLLPRI------------------------ 158

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
                IG +R  +M   G  I A  AL+WGL +++V     +  A   A
Sbjct: 159 -----IGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALA 202

Length = 266

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 48/240 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I  I++NRP  +NA+    +  L    KR ++D    + IL G    FCSG DL      
Sbjct: 20  IATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDL----TA 75

Query: 85  PDTKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
            +     D ++    P       +KPII AI G+A+  G ++AL CD       +L+   
Sbjct: 76  AEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACD-------ILVASR 128

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
             +F                             D  ++    P+  ++ ++L ++IG +R
Sbjct: 129 GAKF----------------------------IDTHAKFGIFPSWGLS-QKLSRIIGANR 159

Query: 199 TMDMISL-GRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSE 257
               +SL    +TA  A  WGL N +V     + +A   A  + K +Q M+    +V+++
Sbjct: 160 AR-EVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVIND 218

Length = 265

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 50/242 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ LI L+RP K NA +   LD L   +  +E D E  +A+L+    +F +G DL ++  
Sbjct: 8   HVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAP 67

Query: 84  NPDTKLF-------DDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
                 F       D +   + +   KP++ A+ GY +  G++L L  D+    +N    
Sbjct: 68  KLAAGGFPFPEGGIDPWG-TVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNT--- 123

Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
               RF  L+              V R  L              P    T+ R  Q  G 
Sbjct: 124 ----RFAQLE--------------VQRGIL--------------PFGGATL-RFPQAAGW 150

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRATV 254
              M  +  G    A+EAL  GL  ++V      GE + RAI++++     + L  +AT+
Sbjct: 151 GNAMRYLLTGDEFDAQEALRLGLVQEVV----PPGEQLERAIELAERIARAAPLGVQATL 206

Query: 255 LS 256
            S
Sbjct: 207 AS 208

Length = 255

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + LI++N PD+ NA+  +    L+  +   E D +    ++ G    FC+G DL  L   
Sbjct: 13  VALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAA 72

Query: 85  PDT-------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLR 127
           P         +++D F      P   P IAA+ G AVG GL+LAL  D+R
Sbjct: 73  PGRPAEDGLRRIYDGFLAVASCPL--PTIAAVNGAAVGAGLNLALAADVR 120

Length = 249

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 44/226 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
            +  I+ N P + NA++L   +AL + +   EDD    + +L G  E  F SG D+ + +
Sbjct: 20  GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFE 79

Query: 83  E---NPDTKLFDDFREFLQKPA----KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
           E   + +     +      + A     KP IA I GY +G G+ +AL CD+R   E+   
Sbjct: 80  ESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRF 139

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G                        +P  +L      +             ++ L  ++G
Sbjct: 140 G------------------------IPAARLGLGYGYD------------GVKNLVDLVG 163

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS 241
            S   D+    R   A EAL  GL +++             A  ++
Sbjct: 164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIA 209

Length = 269

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 70.2 bits (172), Expect = 6e-14
 Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 46/210 (21%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDE 83
           I L++LNRP+K+NA+N   +D L   +   E D      IL G  +  F +G D+HE   
Sbjct: 13  IALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSA 72

Query: 84  N----PDTKLFDDFREFLQKPAK-----KPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
           +     D  L D  R      A+     KP+IAA+ G A G G      C+   + E V 
Sbjct: 73  SVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGG------CE---ITEAVH 123

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
           +   + R ++ K  +         L +P                  PT   T +RL ++ 
Sbjct: 124 LAIASERALFAKPEI--------RLGMP------------------PTFGGT-QRLPRLA 156

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMV 224
           G  R ++++  G   +A  AL+ GL N +V
Sbjct: 157 GRKRALELLLTGDAFSAERALEIGLVNAVV 186

Length = 260

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 56/216 (25%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----- 78
           ++  ++LNRP K NA+N      L E  +  + D E    +L G   +F  G DL     
Sbjct: 15  HVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAG 74

Query: 79  ------HELDENPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDL 126
                  +    P T L  +    LQ         +KP+IAA+ G+ +G G+DL   CD+
Sbjct: 75  VFGQLGKDGLARPRTDLRREILR-LQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM 133

Query: 127 RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV- 185
           R+   +                                  K S+R+    DL +   DV 
Sbjct: 134 RYASADA---------------------------------KFSVRE---VDLGM-VADVG 156

Query: 186 TIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCN 221
           +++RL ++IG     ++   GR I A EA   GL N
Sbjct: 157 SLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVN 192

Length = 272

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + L+ LNRP+  NA+N++    L E+     +D +    +L G E  F +G D+ E    
Sbjct: 18  VALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA 77

Query: 85  PDTKLFDDFREFLQKP---AKKPIIAAITGYAVGQGLDLALWCDL 126
              +++    E   +      KP+IAA+ GYA+G G +LA+  D+
Sbjct: 78  GAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADI 122

Length = 261

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 54/225 (24%)

Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE-NPD 86
           ++LNRP + NA++L       + +   + +    + IL G   +FCSG DL  L+  +  
Sbjct: 21  LNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQ 80

Query: 87  TKLFDDFR---------EFLQ------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           +   D  R         +FLQ      +  +KP+IAAI G  +G G+D+   CD+R+  E
Sbjct: 81  SSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSE 140

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV-TIRRL 190
                          D+  S   V                     DLAI T D+ T++RL
Sbjct: 141 ---------------DAFFSVKEV---------------------DLAI-TADLGTLQRL 163

Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT 235
             ++G    M++   GR  +  EA + GL +++      + E + 
Sbjct: 164 PSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR 208

Length = 275

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 15/119 (12%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + +I+LNRPD++NA        +   + R E D    + +L G    FC+G D+ EL   
Sbjct: 16  VAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTI 75

Query: 85  P--DTKLFDDFREFL--QKPA-----------KKPIIAAITGYAVGQGLDLALWCDLRF 128
              D +   D R F+  ++P            +KP+IAAI G   G GL  AL CD+RF
Sbjct: 76  DPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRF 134

Length = 272

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 54/229 (23%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN-FCSGFDLH--- 79
            + +++L+ P+ +NA+++  L  L E +   ED       ++    G  FC+G +L    
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRG 72

Query: 80  ----ELDENPDT-----KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVE 130
               E D   D        +  F   L+     PI+ A+ G A G G+  AL  DL    
Sbjct: 73  SGGRESDSGGDAGAALETAYHPFLRRLRN-LPCPIVTAVNGPAAGVGMSFALMGDLILCA 131

Query: 131 ENV--LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIR 188
            +   L  F  RR           G+V                         P    T  
Sbjct: 132 RSAYFLQAF--RRI----------GLV-------------------------PDGGSTW- 153

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
            L +++G +R M++  LG  + A  AL WGL N++V+    + EAM  A
Sbjct: 154 LLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLA 202

Length = 266

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 50/166 (30%), Positives = 67/166 (40%), Gaps = 41/166 (24%)

Query: 64  ILYGQEGNFCSGFDLHELD--ENPDTKLFDDFR-EFLQKPAK--KPIIAAITGYAVGQGL 118
           ILYG    F +G D+ EL      +       R + +   A   KP +AAITGYA+G GL
Sbjct: 56  ILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGL 115

Query: 119 DLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDL 178
            LAL  D R   +NV  G               +  +L  L                   
Sbjct: 116 TLALAADWRVSGDNVKFG---------------ATEILAGL------------------- 141

Query: 179 AIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMV 224
             P+ D    RL +  G SR  +++  GR   A EAL  GL ++MV
Sbjct: 142 -APSGDGMA-RLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMV 185

Length = 222

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 12/113 (10%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  ++LNRPDK+N+   +    L+E + + EDD    L +L G    FC+G DL + D 
Sbjct: 13  GVATLTLNRPDKLNSFTREMHRELREALDQVEDDGARAL-LLTGAGRGFCAGQDLADRDV 71

Query: 84  NPD---TKLFDDFREF-------LQKPAKKPIIAAITGYAVGQGLDLALWCDL 126
            P      L +    F       L+     P+IAA+ G A G G +LAL CD+
Sbjct: 72  TPGGAMPDLGESIETFYNPLVRRLRA-LPLPVIAAVNGVAAGAGANLALACDI 123

Length = 262

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 51/212 (24%), Positives = 74/212 (34%), Gaps = 55/212 (25%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LNRP   NA++   L ALQ  +     D    + +L      FC+G DL E+   
Sbjct: 21  VATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA 80

Query: 85  PD----TKLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
                   LF      +Q      +P+IA + G A   G  L   CDL    +       
Sbjct: 81  RGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTA----- 135

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
             RF          GV                  N+    + P           M+  SR
Sbjct: 136 --RFA-------VPGV------------------NIGLFCSTP-----------MVALSR 157

Query: 199 ------TMDMISLGRHITAREALDWGLCNKMV 224
                  M+M+  G  I A  A +WGL N++V
Sbjct: 158 NVPRKQAMEMLLTGEFIDAATAREWGLVNRVV 189

Length = 266

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 54/233 (23%), Positives = 81/233 (34%), Gaps = 73/233 (31%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----- 78
            I  I+LNRP+K NAI   T   L+  ++R + D    + ++ G    FC+G+DL     
Sbjct: 19  RIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAE 78

Query: 79  -------------------HELDENPDTKLF--------DDFREFLQKPAKKPIIAAITG 111
                              H  D+  D  +           F       A KP +A + G
Sbjct: 79  GSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWH--AHKPTVAKVHG 136

Query: 112 YAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLR 171
           Y V  G D+AL CD     ++  +G+                        P T       
Sbjct: 137 YCVAGGTDIALHCDQVIAADDAKIGY------------------------PPT------- 165

Query: 172 DNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMV 224
               R   +P   +   RLG      R   ++  G  IT  +A +WGL  + V
Sbjct: 166 ----RVWGVPATGMWAYRLGP----QRAKRLLFTGDCITGAQAAEWGLAVEAV 210

Length = 302

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 49/235 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I LI+LNRP+++N++    +  L+E +     D    + +L G    F SG D       
Sbjct: 20  IALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVV 79

Query: 85  PDT-------------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           P               +L DD    L++   +P+IAA+ G A+G GL LAL  D+R    
Sbjct: 80  PHVEGLTRPTYALRSMELLDDVILALRR-LHQPVIAAVNGPAIGGGLCLALAADIRVASS 138

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
           +        R   + + L +S + L  L +PR                            
Sbjct: 139 SAYF-----RAAGINNGLTASELGLSYL-LPRA--------------------------- 165

Query: 192 QMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
             IG+SR  +++  GR + A EA   GL ++ V     +      A +M+  S+ 
Sbjct: 166 --IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRP 218

Length = 276

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 71/284 (25%), Positives = 117/284 (41%), Gaps = 64/284 (22%)

Query: 26  TLI-SLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           TL+ +L+ P   NA++     A  E +   E D      +L G  G FC+G +L+ L EN
Sbjct: 13  TLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLEN 72

Query: 85  PD------TKLFDDFREFLQ--KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
                       D   ++++  +   KP+IAA+ G A G G  LAL CDL       L+ 
Sbjct: 73  RAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDL-------LVA 125

Query: 137 FYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
             + +FV  Y+K  L            P       L   L R LA               
Sbjct: 126 ARDAKFVMAYVKVGL-----------TPDGGGSWFLARALPRQLA--------------- 159

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATV 254
                 +++  G+ I+A      G+ N++   G A+ EA+  A Q++  S + LA   ++
Sbjct: 160 -----TELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSL 214

Query: 255 LSECE--TCREEWMSERKHYI----------GISFELKFLQKKK 286
           +++    T   +  +ER H++          GI+    FL+K+ 
Sbjct: 215 IADAPEATLAAQLEAERDHFVASLHHADALEGIA---AFLEKRA 255

Length = 260

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 54/234 (23%), Positives = 80/234 (34%), Gaps = 54/234 (23%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN-FCSGFDLHELD 82
            I  I+ NRP   NA+     + L E  +    D      +L G     F +G D+ +  
Sbjct: 17  GIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFR 76

Query: 83  ENPDTKLFDDFREFLQKPAK------------KPIIAAITGYAVGQGLDLALWCDLRFVE 130
                  F    + +    +             P IAAI G  VG G  +A  CDLR   
Sbjct: 77  A------FSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIAT 130

Query: 131 ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRL 190
            +   GF                       + RT     L + LS           + RL
Sbjct: 131 PSARFGF----------------------PIART-----LGNCLSMS--------NLARL 155

Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244
             ++G +R  DM+   R + A EAL  GL N++V        A   A  ++  +
Sbjct: 156 VALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA 209

Length = 262

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL------ 78
           I  I+LNRPDK+NA  +     L E     + D      I+ G    FC+G DL      
Sbjct: 14  IATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNT 73

Query: 79  HELDENPDTKLFDDFREFLQKP-------------------AKKPIIAAITGYAVGQGLD 119
            +LD     +   +  E  +                     + KP+IAA+ G AVG G  
Sbjct: 74  FDLDA---PRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGAT 130

Query: 120 LALWCDLRFVEENVLMGF-YNRR 141
           + L  D+R        GF + RR
Sbjct: 131 MTLAMDIRLASTAARFGFVFGRR 153

Length = 296

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 25/127 (19%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDE 83
           + +++LN P   N     +L AL++ +     D +    ++ G  E  F +G DL     
Sbjct: 13  VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADL----- 66

Query: 84  NPDTKLFDD-----FREFLQK---------PAKKPIIAAITGYAVGQGLDLALWCDLRFV 129
                LF D      RE  ++           +   IAAI GYA+G GL+ AL CD+R  
Sbjct: 67  ----NLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIA 122

Query: 130 EENVLMG 136
           EE   M 
Sbjct: 123 EEQAQMA 129

Length = 258

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 18/125 (14%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLH---E 80
           ++ +++L+ P  +NA++ +  D L        +  +  + +L G    FC+G DL    +
Sbjct: 13  HVAVVTLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71

Query: 81  LDENPDT---------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           + + P           + F   RE       KP+IAA+ G A+G GL L   CD+    E
Sbjct: 72  VIKGPGDLRAHNRRTRECFHAIRE-----CAKPVIAAVNGPALGAGLGLVASCDIIVASE 126

Query: 132 NVLMG 136
           N + G
Sbjct: 127 NAVFG 131

Length = 257

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 15/122 (12%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDE 83
           I  I +NRP K+NA   +T D L   +K    D +  + +L G  +  FC+G D    D 
Sbjct: 12  IAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDG 71

Query: 84  N---------PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
                     P  +L    R+       KP+IA + GYA+G G  L   CDL    E   
Sbjct: 72  GYDGRGTIGLPMEELHSAIRD-----VPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQ 126

Query: 135 MG 136
            G
Sbjct: 127 FG 128

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I LNRP+ +NA++   L  L + +K   + + + + +L G    F +G D+  +  
Sbjct: 15  RVATIMLNRPEALNALDEPMLKELLQALKEVAE-SSAHIVVLRGNGRGFSAGGDIKMMLS 73

Query: 84  NPDTKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLM 135
           + D   FD     + +         K  I+AI G A G GL +AL  D    + +  + M
Sbjct: 74  SNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAM 133

Query: 136 GF 137
            F
Sbjct: 134 NF 135

Length = 260

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 10  MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE 69
           M  LVS      +  ITL       K+NA++   +DAL   + + EDD    + ++ GQ 
Sbjct: 1   MSELVSYTLEDGVATITLDD----GKVNALSPAMIDALNAALDQAEDD--RAVVVITGQP 54

Query: 70  GNFCSGFDLHELDENPDTKL------FDDFREFLQKPAKKPIIAAITGYAVGQGLDLALW 123
           G F  GFDL  +       +          R  L  P  KP+I A TG+A+ +G  L L 
Sbjct: 55  GIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHP--KPVIVACTGHAIAKGAFLLLS 112

Query: 124 CDLR 127
            D R
Sbjct: 113 ADYR 116

Length = 229

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 31/169 (18%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFD----LHE 80
           +  I+LNRP+++N I     D ++  I   E D +  + +L G    F  G+D       
Sbjct: 15  VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQH 74

Query: 81  LDE--NPDTKLFDDFREFLQKPAK---------------KPIIAAITGYAVGQGLDLALW 123
             E    D + +D  ++F    A+               KP+IA + G+ VG   D AL 
Sbjct: 75  WGEAMMTDGR-WDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALC 133

Query: 124 CDLRFVEENVLMGF-YNRRF-VYLKDSLLSSGVVLYALHVPRTQLKHSL 170
            D+    ++ ++G  Y+R +  YL      +G+ LY L + + +  HSL
Sbjct: 134 ADIVIASDDAVIGTPYSRMWGAYL------TGMWLYRLSLAKVK-WHSL 175

Length = 298

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL--D 82
           + +I  NRP+K NAI       + + +K  + D      +  G EG F +G D+ +    
Sbjct: 16  VQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAA 75

Query: 83  ENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRF 128
               T    +  +FL     A+KPI++ + G A+G G  + L CDL F
Sbjct: 76  AMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTF 123

Length = 251

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFD--LHEL 81
           I  I++NRP++ NA   +T+  LQ       DD+   + IL G+    FCSG D  +   
Sbjct: 77  IAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGK 136

Query: 82  DENPDTKLFDDFREF-LQ---KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
           D               LQ   +   KP+IA + GYAVG G  L + CDL    +N + G
Sbjct: 137 DGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFG 195

Length = 327

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 39/135 (28%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFD------ 77
           I  I++NRP+  NA   KT+  + +      DD    + IL G  +  FCSG D      
Sbjct: 23  IAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGY 82

Query: 78  -----------LHELDENPDTKLFDDFREFLQK-----PAKKPIIAAITGYAVGQGLDLA 121
                      L+ LD              LQ+     P  KP+IA + GYA+G G  L 
Sbjct: 83  GGYVDDDGVPRLNVLD--------------LQRLIRTCP--KPVIAMVAGYAIGGGHVLH 126

Query: 122 LWCDLRFVEENVLMG 136
           L CDL    +N + G
Sbjct: 127 LVCDLTIAADNAIFG 141

Length = 273

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 49/232 (21%), Positives = 100/232 (43%), Gaps = 43/232 (18%)

Query: 17  VCTKKILNITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILY-GQEGNFCS 74
              +   ++ ++ ++ P+ K+N ++ +     +E +     +     A+L  G+ G+F +
Sbjct: 15  RHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVA 74

Query: 75  GFDLHELDE----NPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRF 128
           G D+  +         T+L  + +E  ++   ++KPI+AAI+G  +G GL+LAL C  R 
Sbjct: 75  GADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRI 134

Query: 129 VEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIR 188
             ++             + +LL    V+  L                    +P    T +
Sbjct: 135 ATKD-------------RKTLLGLPEVMLGL--------------------LPGAGGT-Q 160

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVN-CGTAVGEAMTRAIQ 239
           RL ++ G    +DM+  G+ I A  A   G+ +++V+  G  +  A    I+
Sbjct: 161 RLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIE 212

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 48/212 (22%)

Query: 24  NITLISLNRP-DKINAINLKTLDALQENIKRFEDDTE-SPLAILYGQEGNFCSGFDLHEL 81
            I +++++ P +K+N +  +  D + E + + + D     L ++ G+  NF +G D+  L
Sbjct: 10  GIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISML 69

Query: 82  DENPDTKLFDDFREFLQKPAKK---------PIIAAITGYAVGQGLDLALWCDLRFVEEN 132
                 +   + +   Q+             P++AAI G  +G GL+LAL C        
Sbjct: 70  A---ACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALAC-------- 118

Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
                 + R     D  +        L +P  QL             +P    T +RL +
Sbjct: 119 ------HSRVCSDDDKTV--------LGLPEVQLG-----------LLPGSGGT-QRLPR 152

Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMV 224
           +IG S  +DMI  G+ + A++AL  GL + +V
Sbjct: 153 LIGVSTALDMILTGKQLRAKQALKLGLVDDVV 184

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 27/129 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I  I+LNRP+  NA N + L  L    +R E D    + +L G   +F +G DL      
Sbjct: 14  IARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPG 73

Query: 85  PDTKLFDDFREFLQ-----KPA----------------------KKPIIAAITGYAVGQG 117
            D     D    L      KP                        KP IA + G  +  G
Sbjct: 74  RDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGG 133

Query: 118 LDLALWCDL 126
           L LA  CDL
Sbjct: 134 LMLAWVCDL 142

Length = 288

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD- 86
           ++LNRP+K NA++ + +  L    +R   D    + +L G   +FC+G DL  +      
Sbjct: 18  LTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA 77

Query: 87  ---------TKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCD 125
                     +L    +     P  KP+I  I G A G G+ L   CD
Sbjct: 78  DRATRIEEARRLAMMLKALNDLP--KPLIGRIQGQAFGGGVGLISVCD 123

Length = 262

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 57/203 (28%)

Query: 35  KINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDE-NPDT----- 87
            +N +    + AL + ++    D +  + +L G  E  F  G D+ E+   +  +     
Sbjct: 27  SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFI 86

Query: 88  ----KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
                L D  R F   P   P+IA I G+ +G GL+LA  CDLR    +   G    R  
Sbjct: 87  SRLRDLCDAVRHF---PV--PVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRV- 140

Query: 144 YLKDSLLSSGV--VLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
                    G+  V++A  +PR                             +IG +RT  
Sbjct: 141 ---------GIPSVIHAALLPR-----------------------------LIGWARTRW 162

Query: 202 MISLGRHITAREALDWGLCNKMV 224
           ++  G  I A +AL WGL +++V
Sbjct: 163 LLLTGETIDAAQALAWGLVDRVV 185

Length = 256

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESP---LAILYGQEGN-FCSGFDLH- 79
           I  I++NRP   NA    T+    E I+  +D  E P   + IL G     FCSG D   
Sbjct: 13  IAKITINRPQVRNAFRPLTVK---EIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKV 69

Query: 80  -----ELDENPDTKL--FDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
                 +D++   +L   D  R+    P  KP+IA + GYA+G G  L + CDL    EN
Sbjct: 70  RGDYGYIDDSGVHRLNVLDVQRQIRTCP--KPVIAMVNGYAIGGGHVLHMMCDLTIAAEN 127

Query: 133 VLMG 136
              G
Sbjct: 128 ARFG 131

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGN--FCSGFD---- 77
           I  I++NRP+  NA   KT+D + +      DD    + +L G  +G+  FCSG D    
Sbjct: 29  IAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVR 88

Query: 78  -----LHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
                  + D  P   + D  R     P  KP+IA + GYA+G G  L + CDL    +N
Sbjct: 89  GDSGGYVDDDGIPRLNVLDLQRLIRTMP--KPVIAMVAGYAIGGGHVLHVVCDLTIAADN 146

Query: 133 VLMG 136
            + G
Sbjct: 147 AIFG 150

Length = 282

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLH-------- 79
           ++LNRPD  NA N   +  L    +  + D      +L G    FC+G DL+        
Sbjct: 17  VTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGY 76

Query: 80  ELDEN-PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDL 126
             DEN  D +   D    + +   KP+IA + G A   G+ L   CD+
Sbjct: 77  SDDENRADARRLADMLRAIYR-CPKPVIARVHGDAYAGGMGLVAACDI 123

Length = 262

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 49/227 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I  +  + P  +N  +  TL +L + +   +  +     IL   +  F  G D+ E   
Sbjct: 16  GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLG 75

Query: 84  N---PDTKLFDDFREFLQKPAKK------PIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
               PD +L   +  F      K      P +AAI G A+G G +  L  D R  ++   
Sbjct: 76  LFALPDAEL-IQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAK 134

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
           +G                        +P T+L             +P    T+ RL ++I
Sbjct: 135 IG------------------------LPETKLG-----------IMPGFGGTV-RLPRVI 158

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNC---GTAVGEAMTRAI 238
           G    ++ I+ G+   A +AL  G  + +V     G A  + +  AI
Sbjct: 159 GADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAI 205

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHEL 81
            I  I+ N P K NA++   +D L + +       E  + IL    G+  + +G D+HEL
Sbjct: 13  KIATITFNNPAKRNALSKVLIDDLMQALSDLNRP-EIRVVILRAPSGSKVWSAGHDIHEL 71

Query: 82  DE-NPDTKLFDD-FREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDL 126
                D   +DD  R+ L+   K  KP+IA + G   G   +L + CDL
Sbjct: 72  PSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDL 120

Length = 261

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 27  LISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFD---LHEL 81
           +I+LNRP  +NA++L+ + A+   +  +EDD      ++ G  G   FC+G D   L+E 
Sbjct: 15  VITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEG-AGERGFCAGGDIRALYEA 73

Query: 82  DENPDTKLFDDF-RE-----FLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
               D    D F RE      L     KP IA + G  +G G+ ++     R V E   M
Sbjct: 74  ARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKM 133

Query: 136 G 136
            
Sbjct: 134 A 134

Length = 342

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 52/214 (24%)

Query: 24  NITLISLNRPD-KINAINLKTLDALQENIKRFEDDTE-SPLAILYGQEGNFCSGFDLHEL 81
           NI +I+++ P  K+N +  +  + ++  +K+  +D E   +  + G+  NF +G D++ L
Sbjct: 15  NIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINML 74

Query: 82  DENPDT-----------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVE 130
                            +LF +           P++AAI G  +G GL+LAL C  R   
Sbjct: 75  AACKTAQEAEALARQGQQLFAEIEAL-----PIPVVAAIHGACLGGGLELALACHYRVCT 129

Query: 131 ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRL 190
           +       + + V               L +P  QL             +P    T +RL
Sbjct: 130 D-------DPKTV---------------LGLPEVQLG-----------LLPGSGGT-QRL 155

Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMV 224
            ++IG S  +DMI  G+ + A++AL  GL + +V
Sbjct: 156 PRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV 189

Length = 708

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 54/209 (25%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++  + L+RP+  N IN + +    + + R E        +L G    FC G D   + E
Sbjct: 13  DVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHAATI--VVLEGLPEVFCFGADFSAIAE 70

Query: 84  NPDTK---------LFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
            PD           L+D +      P     IA + G     G+      D+   +E   
Sbjct: 71  KPDAGRADLIDAEPLYDLWHRLATGP--YVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT--IRRLGQ 192
                          LS   +L+ L                    IP C +   IRR   
Sbjct: 129 FS-------------LSE--LLFGL--------------------IPACVLPFLIRR--- 150

Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCN 221
            IGT +   M  + + +TA++A  WGL +
Sbjct: 151 -IGTQKAHYMTLMTQPVTAQQAFSWGLVD 178

Length = 255

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 17/114 (14%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  I LN P  +NA + +    L +  +  + D +  + ++ G+   F +G DL  ++E 
Sbjct: 22  VLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEE- 80

Query: 85  PDTKLFDDF--REFLQKPAK----------KPIIAAITGYAVGQGLDLALWCDL 126
               + DDF  R  + + A+          KPI++AI G AVG GL  AL  D+
Sbjct: 81  ----MADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADI 130

Length = 268

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 30  LNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL------HELDE 83
           L+R DK NA N + +  L   + + + D      +L G+  +F +G DL       +LD 
Sbjct: 21  LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80

Query: 84  NPDTKLFDDFREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDL 126
           N +    DD RE  +        K P +A + G A G  L L   CD+
Sbjct: 81  NTN---LDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDM 125

Length = 265

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 15  SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCS 74
           S V  ++  ++ +++LNRP ++NA++   +  L +    FE+D    L IL G    FC+
Sbjct: 9   SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query: 75  GFDLHELDENPD-------TKLFDD--FREFLQKPAKKPIIAAITGYAVGQGLDLALWCD 125
           G D+  +  + +          F D     ++     K  ++ + G  +G G  +++   
Sbjct: 69  GGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query: 126 LRFVEENVLMGF 137
            R   EN +   
Sbjct: 129 FRIATENTVFAM 140

Length = 381

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 17  VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGF 76
           V  ++   + +I+LNRP ++N I+L  +  L E ++++E D    L I+ G    F +G 
Sbjct: 13  VLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGG 72

Query: 77  DL---HELDENPDTKLFDDFREFLQ----KPAKKPIIAAITGYAVGQGLDLALWCDLRFV 129
           DL   ++  E+ D+ L   +R +         KK  +A + G  +G G  L +    R V
Sbjct: 73  DLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVV 132

Query: 130 EEN 132
            E 
Sbjct: 133 TEK 135

Length = 379

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I  ++++ P  +NA+      AL + I     D ++ + +L  +   F +G D+ EL   
Sbjct: 12  IAEVTVDYP-PVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT 70

Query: 85  PD-TKL-------FDDFREFLQKPAKKPIIAAITGYAVGQGLDLA 121
           P  T L       F  FR   +     P+IAA+ G+ +G G+ L 
Sbjct: 71  PGFTALIDANRGCFAAFRAVYECA--VPVIAAVHGFCLGGGIGLV 113

Length = 249

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 49/228 (21%), Positives = 75/228 (32%), Gaps = 83/228 (36%)

Query: 25  ITLISLNRPDKINAIN-------LKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFD 77
           I  ++LNRP+K NA++       +  LDAL       E D ++ + +L G    + +G D
Sbjct: 18  IAWVTLNRPEKRNAMSPTLNREMIDVLDAL-------EFDDDAGVLVLTGAGDAWSAGMD 70

Query: 78  LHELDENPDTKLFDDFREFLQKPA--------------------KKPIIAAITGYAVGQG 117
           L E            FRE   +P                     +KP IA + G+  G G
Sbjct: 71  LKEY-----------FRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGG 119

Query: 118 LDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSR- 176
               + CDL    +    G                                     LS  
Sbjct: 120 FSPLVACDLAIAADEAQFG-------------------------------------LSEI 142

Query: 177 DLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMV 224
           +  IP      + +   +G    +  I  G   T R+A + GL N+ V
Sbjct: 143 NWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESV 190

Length = 275

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 54/209 (25%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I  +  + P  +N ++  TL +L E +   E  ++    +L   +  F  G D+ E   
Sbjct: 16  GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLS 75

Query: 84  N---PDTKL----------FDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVE 130
               P+ +L          F+   E L  P   P +AAI GYA+G G +  L  D R   
Sbjct: 76  LFAAPEEELSQWLHFANSIFNRL-EDL--PV--PTVAAINGYALGGGCECVLATDYRVAS 130

Query: 131 ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRL 190
            +  +G                         P T+L             +P    T+ RL
Sbjct: 131 PDARIGL------------------------PETKLG-----------IMPGFGGTV-RL 154

Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGL 219
            ++IG    ++ I+ G+ + A +AL  G 
Sbjct: 155 PRLIGADNALEWIAAGKDVRAEDALKVGA 183

Length = 715

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE-LDENPD 86
           ++L+ P   NA++ + +  L + ++    D      +L    G FC+G DL E      D
Sbjct: 19  LTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGD 78

Query: 87  TK---------LFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDL 126
                      +    R  ++ P  KP+IAAI G+    G  L   CD+
Sbjct: 79  PYDAAVARAREMTALLRAIVELP--KPVIAAIDGHVRAGGFGLVGACDI 125

Length = 260

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL--D 82
           I  +++      NA + +  D L E       D    + IL G    F +G     L   
Sbjct: 15  IAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSL 74

Query: 83  ENPDTKLFDD--FREFLQKPAKKPIIAAITGYAVGQGLDLALWCD 125
           +       +   +   L  P   P+IAA+ G+A+G GL L L+ D
Sbjct: 75  QTGKGTFTEANLYSLALNCPI--PVIAAMQGHAIGGGLVLGLYAD 117

Length = 249

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 30  LNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL 89
           LNRP  +NA+ +  +  L+   + +E++ +    ++ G    FCSG D+  L    +   
Sbjct: 57  LNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGN 116

Query: 90  FDDFREFLQKPAK---------KPIIAAITGYAVGQGLDLALWCDLRFVEENVL------ 134
            ++ + F +   K         KP +A + G  +G G  +++    R V +  +      
Sbjct: 117 VEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEV 176

Query: 135 -MGFY 138
            MGF+
Sbjct: 177 QMGFH 181

Length = 407

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG1680|consensus	290		100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
KOG1679|consensus	291		100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
KOG1681|consensus	292		100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
KOG0016|consensus	266		100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
KOG1682|consensus	287		100.0
KOG1684|consensus	401		99.96
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.81
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.79
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.71
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.64
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.61
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.61
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.55
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.51
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.46
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.44
PRK10949	618	protease 4; Provisional	99.19
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.16
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.03
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.77
PRK11778	330	putative inner membrane peptidase; Provisional	98.73
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.65
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	98.49
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.38
KOG1683|consensus	380		98.36
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.32
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.3
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.3
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.23
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.14
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.14
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.14
PRK10949	618	protease 4; Provisional	98.11
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.1
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.08
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.99
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.89
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.89
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.86
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.82
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.69
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.65
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.65
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.61
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.54
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.53
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.52
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.47
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.24
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.23
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	97.19
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.07
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.05
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.89
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.87
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.86
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.88
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	94.98
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	94.71
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	92.16
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	92.08
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	81.84

>KOG1680|consensus

Probab=100.00  E-value=1.2e-52  Score=385.81  Aligned_cols=238  Identities=36%  Similarity=0.531  Sum_probs=208.5

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh----HHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL----FDD   92 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~----~~~   92 (314)
                      .....+++|+.|+||||+++|+++..|+.||.+++..+++|+.+.++||||.|++||+|.||+++......+.    ...
T Consensus        39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~  118 (290)
T KOG1680|consen   39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLR  118 (290)
T ss_pred             EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccc
Confidence            4455678999999999999999999999999999999999999999999999999999999999876433221    111


Q ss_pred             HHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccc
Q psy9494          93 FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRD  172 (314)
Q Consensus        93 ~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  172 (314)
                      ....+. +.+||+||+|||+|+|||++|++.||+|||+++|+|++++.++|                             
T Consensus       119 ~~~~~~-~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~G-----------------------------  168 (290)
T KOG1680|consen  119 VWDLVS-RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMG-----------------------------  168 (290)
T ss_pred             hhhhhh-hcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccC-----------------------------
Confidence            222222 79999999999999999999999999999999999999999999                             


Q ss_pred             cccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHH
Q psy9494         173 NLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADR  251 (314)
Q Consensus       173 ~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K  251 (314)
                             ++|.+|++++|++.||.++|+++++||++++|+||+++||||+|+|.++++++|.+++++|++.||. ++..|
T Consensus       169 -------i~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K  241 (290)
T KOG1680|consen  169 -------IIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADK  241 (290)
T ss_pred             -------CccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                   8889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCC
Q psy9494         252 ATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNG  291 (314)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~  291 (314)
                      +.++...+....+.+..+.......+        ..+|.+||+|.|+.
T Consensus       242 ~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k  289 (290)
T KOG1680|consen  242 ESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK  289 (290)
T ss_pred             HHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence            99999877776655544433222222        26999999999975

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-51  Score=381.50  Aligned_cols=243  Identities=25%  Similarity=0.378  Sum_probs=207.8

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hHHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LFDD   92 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~   92 (314)
                      ++.+.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......+ ....
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (257)
T PRK05862          3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGD   82 (257)
T ss_pred             CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHH
Confidence            456888999999999999999999999999999999999999999999999999999999999999875432211 1122


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      +...+.+  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        83 ~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G---------------------------  135 (257)
T PRK05862         83 YITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLG---------------------------  135 (257)
T ss_pred             HHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccC---------------------------
Confidence            2223332  89999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               +.|++|++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|++.+|. ++.
T Consensus       136 ---------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~  206 (257)
T PRK05862        136 ---------VLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMM  206 (257)
T ss_pred             ---------cCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHH
Confidence                     7778899999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      +|+.++........+....+......        ....+|++||+|.|+|+
T Consensus       207 ~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~~~~  257 (257)
T PRK05862        207 AKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFKHR  257 (257)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCCCCC
Confidence            99999876554444333322211111        11279999999999874

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-51  Score=379.93  Aligned_cols=243  Identities=24%  Similarity=0.423  Sum_probs=206.7

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh-HHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL-FDD   92 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~   92 (314)
                      .+.|.++++++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........ ...
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (254)
T PRK08252          2 SDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRG   81 (254)
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHH
Confidence            3568889999999999999999999999999999999999999999999999999999999999998754322111 112


Q ss_pred             HHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccc
Q psy9494          93 FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRD  172 (314)
Q Consensus        93 ~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  172 (314)
                      +.......+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                             
T Consensus        82 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------------------  132 (254)
T PRK08252         82 FGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRG-----------------------------  132 (254)
T ss_pred             HHHHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcC-----------------------------
Confidence            222232379999999999999999999999999999999999999999999                             


Q ss_pred             cccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHH
Q psy9494         173 NLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADR  251 (314)
Q Consensus       173 ~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K  251 (314)
                             +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++++++.++++++++.||. ++.+|
T Consensus       133 -------l~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K  205 (254)
T PRK08252        133 -------LVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASK  205 (254)
T ss_pred             -------CCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                   7778899999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         252 ATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      +.++........+....+......        ....+|++||+|.|+++
T Consensus       206 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~~  254 (254)
T PRK08252        206 RIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVWTGK  254 (254)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence            999876544333322222111111        11269999999999864

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=3.7e-51  Score=379.19  Aligned_cols=242  Identities=26%  Similarity=0.370  Sum_probs=206.2

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hHHHH
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LFDDF   93 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~   93 (314)
                      +.|.++++++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++....... .....
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   81 (255)
T PRK09674          2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPR   81 (255)
T ss_pred             ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHH
Confidence            56888999999999999999999999999999999999999999999999999999999999999875422111 11112


Q ss_pred             HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccc
Q psy9494          94 REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLR  171 (314)
Q Consensus        94 ~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~  171 (314)
                      .+++..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                            
T Consensus        82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----------------------------  133 (255)
T PRK09674         82 PQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLG----------------------------  133 (255)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcC----------------------------
Confidence            223332  89999999999999999999999999999999999999999999                            


Q ss_pred             ccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHH
Q psy9494         172 DNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLAD  250 (314)
Q Consensus       172 ~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~  250 (314)
                              +.|++|++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..||. ++.+
T Consensus       134 --------l~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~  205 (255)
T PRK09674        134 --------IMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAA  205 (255)
T ss_pred             --------CCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence                    7778899999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         251 RATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       251 K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      |+.++........+.+..+.......        ...+|++||+|.|+++
T Consensus       206 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~~~  255 (255)
T PRK09674        206 KQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFKGR  255 (255)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence            99998765544333332221111111        1269999999999864

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-51  Score=379.18  Aligned_cols=240  Identities=22%  Similarity=0.300  Sum_probs=202.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc---hhHHHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT---KLFDDF   93 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~~~~   93 (314)
                      |.++++++|++||||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|.|++++......   ......
T Consensus         1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   80 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGG   80 (255)
T ss_pred             CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhh
Confidence            45788999999999999999999999999999999999999999999999999999999999987542111   111111


Q ss_pred             HHHHh---cCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          94 REFLQ---KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        94 ~~~~~---~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      .+.+.   .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G---------------------------  133 (255)
T PRK06563         81 IDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRG---------------------------  133 (255)
T ss_pred             hHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcC---------------------------
Confidence            11111   289999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               ++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++.
T Consensus       134 ---------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  204 (255)
T PRK06563        134 ---------ILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQA  204 (255)
T ss_pred             ---------CCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence                     7778899999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +|+.++........+....+.......        ...+|++||+|.|+++
T Consensus       205 ~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~  255 (255)
T PRK06563        205 TLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARFKGR  255 (255)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence            999998765443333322221111111        1269999999999763

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-51  Score=378.73  Aligned_cols=244  Identities=29%  Similarity=0.407  Sum_probs=206.7

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch-hH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK-LF   90 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~   90 (314)
                      .++.|.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++....... ..
T Consensus         2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~   81 (259)
T PRK06494          2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPE   81 (259)
T ss_pred             CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhh
Confidence            456788999999999999999999999999999999999999999999999999998 7999999999875322111 11


Q ss_pred             HHHHHHHhc-CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          91 DDFREFLQK-PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        91 ~~~~~~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      ..+..+... ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                          
T Consensus        82 ~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------------  135 (259)
T PRK06494         82 SGFGGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVG--------------------------  135 (259)
T ss_pred             HHHHHHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccC--------------------------
Confidence            122222211 89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                ++|++|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus       136 ----------l~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  205 (259)
T PRK06494        136 ----------LAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR  205 (259)
T ss_pred             ----------CCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH
Confidence                      7778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHH--HHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERK--HYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      .+|+.++.......++....+.  ......        ...+|++||+|.|+++
T Consensus       206 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~  259 (259)
T PRK06494        206 ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRWKGR  259 (259)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence            9999998765544443333221  111111        1269999999999874

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5e-51  Score=380.07  Aligned_cols=242  Identities=22%  Similarity=0.318  Sum_probs=205.1

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC-----c-
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINL-KTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD-----T-   87 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~-~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-----~-   87 (314)
                      +.|.++++++|++||||||++.|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|.|++++.....     . 
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (266)
T PRK09245          3 DFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA   82 (266)
T ss_pred             CceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence            468899999999999999999999995 999999999999999999999999999999999999998753211     1 


Q ss_pred             hhHHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccc
Q psy9494          88 KLFDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHV  161 (314)
Q Consensus        88 ~~~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~  161 (314)
                      .....    +..++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                  
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------  144 (266)
T PRK09245         83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLG------------------  144 (266)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccC------------------
Confidence            11111    2222332  89999999999999999999999999999999999999999999                  


Q ss_pred             ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494         162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  241 (314)
                                        +.|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+
T Consensus       145 ------------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  206 (266)
T PRK09245        145 ------------------LIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIA  206 (266)
T ss_pred             ------------------cCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence                              77788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         242 KLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       242 ~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      +.||. ++.+|+.++.......+.....+......        ....+|++||+|.|+++
T Consensus       207 ~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~  266 (266)
T PRK09245        207 ANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVFTGR  266 (266)
T ss_pred             hCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCCCCC
Confidence            99999 99999999876544333332222111111        11269999999999864

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.6e-51  Score=378.08  Aligned_cols=242  Identities=21%  Similarity=0.346  Sum_probs=204.7

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC---chhH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD---TKLF   90 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~   90 (314)
                      ++.|.++++++|++||||||++.|++|.+|+.+|.+++++++ |+++|+|||||.|++||+|+|++++.....   ....
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (262)
T PRK08140          3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG   81 (262)
T ss_pred             CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence            567899999999999999999999999999999999999999 999999999999999999999998743211   1111


Q ss_pred             HHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          91 DDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        91 ~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                      ..+    ...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------  140 (262)
T PRK08140         82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIG---------------------  140 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccC---------------------
Confidence            111    112222  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus       141 ---------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~  205 (262)
T PRK08140        141 ---------------LVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP  205 (262)
T ss_pred             ---------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC
Confidence                           67788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      |. +..+|+.++.............+......        ....+|++||+|.|.++
T Consensus       206 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~  262 (262)
T PRK08140        206 TRGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRFTGR  262 (262)
T ss_pred             HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence            99 99999999876544433332222111111        11269999999999764

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.8e-51  Score=378.06  Aligned_cols=243  Identities=23%  Similarity=0.313  Sum_probs=206.8

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-hhH--
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-KLF--   90 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~--   90 (314)
                      ++.+.++++++|++||||||+++|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...... ...  
T Consensus         4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (263)
T PRK07799          4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG   83 (263)
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence            46788999999999999999999999999999999999999999999999999999999999999987543211 101  


Q ss_pred             ----HHHHHHHh-cCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          91 ----DDFREFLQ-KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        91 ----~~~~~~~~-~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                          ..+..+.. ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                      
T Consensus        84 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------------  141 (263)
T PRK07799         84 SYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWS----------------------  141 (263)
T ss_pred             hhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccC----------------------
Confidence                11111111 289999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    ++|.+|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||
T Consensus       142 --------------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~  207 (263)
T PRK07799        142 --------------LFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGP  207 (263)
T ss_pred             --------------cCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcCh
Confidence                          777889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      . ++.+|+.++........+....+.......        ...+|++||+|.|+++
T Consensus       208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~  263 (263)
T PRK07799        208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNFQGR  263 (263)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence            9 999999998765544443333322211111        1269999999999874

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-51  Score=381.30  Aligned_cols=243  Identities=21%  Similarity=0.292  Sum_probs=205.5

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-------
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-------   85 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-------   85 (314)
                      .++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....       
T Consensus         4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   83 (272)
T PRK06142          4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG   83 (272)
T ss_pred             CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence            3567999999999999999999999999999999999999999999999999999999999999999874310       


Q ss_pred             --C-chhH----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhh
Q psy9494          86 --D-TKLF----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVL  156 (314)
Q Consensus        86 --~-~~~~----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~  156 (314)
                        . ....    ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|             
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-------------  150 (272)
T PRK06142         84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLG-------------  150 (272)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhC-------------
Confidence              0 0111    111222222  89999999999999999999999999999999999999999999             


Q ss_pred             hhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHHH
Q psy9494         157 YALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAMT  235 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~~  235 (314)
                                             +.|+.|++++|++++|+.+|++++++|++++|+||+++||||+++++ +++.+++.+
T Consensus       151 -----------------------l~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~  207 (272)
T PRK06142        151 -----------------------MVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHA  207 (272)
T ss_pred             -----------------------CCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHH
Confidence                                   77789999999999999999999999999999999999999999996 889999999


Q ss_pred             HHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494         236 RAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG  291 (314)
Q Consensus       236 ~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~  291 (314)
                      ++++|++.||. ++.+|+.++........+....+......        ....+|++||+|.|+|
T Consensus       208 ~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~~~  272 (272)
T PRK06142        208 TAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEFTG  272 (272)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCCCC
Confidence            99999999999 99999999876544333332222111111        1126999999999975

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-50  Score=376.47  Aligned_cols=241  Identities=23%  Similarity=0.318  Sum_probs=204.5

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch---h
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK---L   89 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~---~   89 (314)
                      ++.|.++++++|++||||||++ |++|.+|+.+|.++++++++|+++|+|||||.| ++||+|+|++++.......   .
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   80 (258)
T PRK09076          2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREM   80 (258)
T ss_pred             ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHH
Confidence            4578899999999999999986 999999999999999999999999999999998 7899999999875322111   1


Q ss_pred             HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        81 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G------------------------  136 (258)
T PRK09076         81 ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVG------------------------  136 (258)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccC------------------------
Confidence            1122223333  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. 
T Consensus       137 ------------l~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a  204 (258)
T PRK09076        137 ------------LLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSA  204 (258)
T ss_pred             ------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHH
Confidence                        7778999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNG  291 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~  291 (314)
                      ++.+|+.++........+....+.......        ...+|++||+|.|++
T Consensus       205 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~  257 (258)
T PRK09076        205 VAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWKN  257 (258)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCC
Confidence            999999998765443333322221111111        126999999999976

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-50  Score=376.01  Aligned_cols=241  Identities=25%  Similarity=0.372  Sum_probs=204.9

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-h---hH
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-K---LF   90 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~---~~   90 (314)
                      +.+.++++++|++||||||++ |++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... .   ..
T Consensus         2 ~~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (257)
T PRK07658          2 KFLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELA   80 (257)
T ss_pred             ceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHH
Confidence            367889999999999999986 999999999999999999999999999999999999999999987543221 1   11


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      .....++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        81 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------------  135 (257)
T PRK07658         81 QLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLG-------------------------  135 (257)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccC-------------------------
Confidence            112223332  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|++|++++|++++|..+|++++++|++++|+||+++||||++++++++.+++.+++++|++.||. +
T Consensus       136 -----------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~  204 (257)
T PRK07658        136 -----------LIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT  204 (257)
T ss_pred             -----------CCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH
Confidence                       6778899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         248 LADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +.+|+.++........+.+..+.......        ...+|++||+|.|+++
T Consensus       205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~  257 (257)
T PRK07658        205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFSGK  257 (257)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999998765544433333222211111        1269999999999864

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1e-50  Score=376.26  Aligned_cols=239  Identities=23%  Similarity=0.385  Sum_probs=202.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC--chhHHH--
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD--TKLFDD--   92 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~~--   92 (314)
                      |.++++++|++||||||++.|++|.+|+.+|.++++++++|+ +|+|||||.|++||+|+|++++.....  ......  
T Consensus         1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   79 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE   79 (256)
T ss_pred             CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence            357889999999999999999999999999999999999998 999999999999999999998754221  111111  


Q ss_pred             --HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          93 --FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        93 --~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                        +...+..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        80 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG-------------------------  134 (256)
T TIGR02280        80 TFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIG-------------------------  134 (256)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcC-------------------------
Confidence              1122222  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|++|+++++++++|+.+|++|+++|++++|+||+++||||+++|++++.+++.+++++|++.||. +
T Consensus       135 -----------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~  203 (256)
T TIGR02280       135 -----------LIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGL  203 (256)
T ss_pred             -----------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHH
Confidence                       7778899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         248 LADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      +.+|+.++........+....+......        ....+|++||+|.|+++
T Consensus       204 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~  256 (256)
T TIGR02280       204 ALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFTGK  256 (256)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCCCC
Confidence            9999999876544433332222111111        11269999999999874

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-50  Score=380.26  Aligned_cols=248  Identities=23%  Similarity=0.315  Sum_probs=208.6

Q ss_pred             hhhccc--cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--
Q psy9494          10 MLRLVS--SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--   85 (314)
Q Consensus        10 ~~~~~~--~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--   85 (314)
                      +.+.|.  .+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....  
T Consensus        10 ~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~   89 (277)
T PRK08258         10 PLAGYEARHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTK   89 (277)
T ss_pred             ccccccccceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccc
Confidence            555565  6889999999999999999999999999999999999999999999999999999999999999874311  


Q ss_pred             -CchhHHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494          86 -DTKLFDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA  158 (314)
Q Consensus        86 -~~~~~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~  158 (314)
                       .......    +.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|+              
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl--------------  155 (277)
T PRK08258         90 MDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGL--------------  155 (277)
T ss_pred             cChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCc--------------
Confidence             1111111    1222222  899999999999999999999999999999999999999999993              


Q ss_pred             cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                           +||++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++
T Consensus       156 ---------------------~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~  214 (277)
T PRK08258        156 ---------------------AGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALAR  214 (277)
T ss_pred             ---------------------CCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHH
Confidence                                 44578899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         239 QMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +|+..||. ++.+|+.++.......++....+.......        ...+|+|||+|.|+++
T Consensus       215 ~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~  277 (277)
T PRK08258        215 RLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFEGD  277 (277)
T ss_pred             HHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence            99999999 999999998765544443333222211111        1269999999999864

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-50  Score=377.20  Aligned_cols=243  Identities=19%  Similarity=0.282  Sum_probs=202.9

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C-chh
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D-TKL   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~~   89 (314)
                      .++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....  . ...
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (262)
T PRK05995          2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN   81 (262)
T ss_pred             CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence            3567899999999999999999999999999999999999999999999999999999999999999874321  1 111


Q ss_pred             ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                         ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------  140 (262)
T PRK05995         82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLG---------------------  140 (262)
T ss_pred             hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccc---------------------
Confidence               1122233333  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|++ ++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus       141 ---------------l~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (262)
T PRK05995        141 ---------------LIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS  204 (262)
T ss_pred             ---------------cCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC
Confidence                           66666654 58999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHH-HHHHHHHHh--------hhHHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEW-MSERKHYIG--------ISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++.......... ...+.....        .....+|++||+|.|+|+
T Consensus       205 ~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~  262 (262)
T PRK05995        205 PQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWRGR  262 (262)
T ss_pred             HHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence            99 9999999987544332222 221111111        111269999999999875

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-50  Score=376.90  Aligned_cols=239  Identities=24%  Similarity=0.337  Sum_probs=203.2

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC---CchhH
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP---DTKLF   90 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~~~   90 (314)
                      +.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++....   .....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK05980          3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL   82 (260)
T ss_pred             ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence            4688999999999999999999999999999999999999999999999999998 7999999999874321   11111


Q ss_pred             HHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          91 DDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        91 ~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                      ..+    ...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G---------------------  141 (260)
T PRK05980         83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLG---------------------  141 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccC---------------------
Confidence            111    222222  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     ++|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.|
T Consensus       142 ---------------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  206 (260)
T PRK05980        142 ---------------MPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS  206 (260)
T ss_pred             ---------------CCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC
Confidence                           77789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAK  289 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~  289 (314)
                      |. ++.+|+.++........+....+......        ....+|++||+|.|
T Consensus       207 p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  260 (260)
T PRK05980        207 PVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY  260 (260)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence            99 99999999876554443333222211111        11269999999987

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.5e-50  Score=377.56  Aligned_cols=245  Identities=20%  Similarity=0.302  Sum_probs=205.7

Q ss_pred             hhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhH
Q psy9494          11 LRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLF   90 (314)
Q Consensus        11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   90 (314)
                      .+..+.+.++++++|++||||||+++|++|.+|+.+|.+++++++.|++||+|||||.|++||+|.|++++.........
T Consensus         7 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (266)
T PRK08139          7 ATEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF   86 (266)
T ss_pred             cccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999987543221111


Q ss_pred             H----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          91 D----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        91 ~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                      .    .+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                     
T Consensus        87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------  145 (266)
T PRK08139         87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIG---------------------  145 (266)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcC---------------------
Confidence            1    12222322  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     ++|++ ++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus       146 ---------------l~p~~-~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  209 (266)
T PRK08139        146 ---------------LFCST-PMVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS  209 (266)
T ss_pred             ---------------CCCCc-cHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC
Confidence                           55554 45789999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++........+.+..+.......        ...+|++||+|.|.++
T Consensus       210 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~  266 (266)
T PRK08139        210 PAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWRGR  266 (266)
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence            99 999999998765544433332222111111        1269999999999864

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-50  Score=374.54  Aligned_cols=239  Identities=26%  Similarity=0.328  Sum_probs=202.3

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---hHH
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---LFD   91 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~~   91 (314)
                      +.|.++++++|++||||||++.|++|.+|+.+|.+++++++  +++|+|||||.|++||+|.|++++.......   ...
T Consensus         2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   79 (255)
T PRK08150          2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSR   79 (255)
T ss_pred             ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHH
Confidence            46788999999999999999999999999999999999997  7899999999999999999999875432111   112


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                          
T Consensus        80 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------------  133 (255)
T PRK08150         80 RWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRG--------------------------  133 (255)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccC--------------------------
Confidence            22333333  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                ++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++
T Consensus       134 ----------l~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  203 (255)
T PRK08150        134 ----------IFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF  203 (255)
T ss_pred             ----------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH
Confidence                      7778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHH--------hhhHHHHHHhcCCCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERKHYI--------GISFELKFLQKKKKAKNG  291 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~af~ekr~p~~~~  291 (314)
                      .+|+.++.......+.....+....        ......+|++||+|.|+.
T Consensus       204 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~  254 (255)
T PRK08150        204 AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP  254 (255)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence            9999998765443333222221111        111126999999999963

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-50  Score=376.12  Aligned_cols=248  Identities=24%  Similarity=0.258  Sum_probs=208.0

Q ss_pred             HhhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCc
Q psy9494           9 AMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDT   87 (314)
Q Consensus         9 ~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   87 (314)
                      +|.+..+.|.++++++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.| ++||+|+|++++......
T Consensus         2 ~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~   81 (262)
T PRK06144          2 AMTTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTA   81 (262)
T ss_pred             CcccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccch
Confidence            3566778899999999999999999999999999999999999999999999999999998 799999999987543221


Q ss_pred             h----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccc-cccccccccccchhhhhcc
Q psy9494          88 K----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR-FVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        88 ~----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~-~G~~~~~~~~~g~~~~~~~  160 (314)
                      .    ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.+ +|                 
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G-----------------  144 (262)
T PRK06144         82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLG-----------------  144 (262)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhcc-----------------
Confidence            1    11112223332  899999999999999999999999999999999999999997 99                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         ++|++|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|
T Consensus       145 -------------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i  205 (262)
T PRK06144        145 -------------------NCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELL  205 (262)
T ss_pred             -------------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHH
Confidence                               7778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHHHH-HHHHH---HhhhHHHHHHhcCCCCCCCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEWMS-ERKHY---IGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~af~ekr~p~~~~~  292 (314)
                      ++.||. ++.+|+.++.......+.... .....   .......+|++||+|.|.++
T Consensus       206 ~~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~  262 (262)
T PRK06144        206 AAHAPLTLRATKEALRRLRREGLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKWKGR  262 (262)
T ss_pred             HhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence            999999 999999998654432221110 00000   01111269999999999764

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-50  Score=375.26  Aligned_cols=245  Identities=23%  Similarity=0.356  Sum_probs=206.9

Q ss_pred             hccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-h
Q psy9494          12 RLVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-L   89 (314)
Q Consensus        12 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~   89 (314)
                      +-.+.+.++. +++|++|+||||++.|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++....... .
T Consensus         4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~   83 (261)
T PRK08138          4 TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMY   83 (261)
T ss_pred             CCCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHH
Confidence            4456678887 7889999999999999999999999999999999999999999999999999999999875432211 1


Q ss_pred             HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ...+.+++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        84 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------------  139 (261)
T PRK08138         84 LRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVG------------------------  139 (261)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccc------------------------
Confidence            1222233332  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  ++|++|++++|++++|+.+|++|+++|++++|+||+++||||+++|++++.+++.++++++++.||. 
T Consensus       140 ------------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a  207 (261)
T PRK08138        140 ------------LMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLA  207 (261)
T ss_pred             ------------cCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHH
Confidence                        7778899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHh--------hhHHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIG--------ISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++........+....+.....        .....+|++||+|.|+++
T Consensus       208 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~~~~  261 (261)
T PRK08138        208 LAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAYKGK  261 (261)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence            9999999987654433332222211111        111279999999999764

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=2.4e-50  Score=374.34  Aligned_cols=244  Identities=25%  Similarity=0.348  Sum_probs=207.6

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch---
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK---   88 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~---   88 (314)
                      .++.+.++++++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||||.| ++||+|+|++++.......   
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~   81 (260)
T PRK05809          2 ELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRK   81 (260)
T ss_pred             CcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999 9999999999875432111   


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ......+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        82 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~G-----------------------  138 (260)
T PRK05809         82 FGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLG-----------------------  138 (260)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccC-----------------------
Confidence            11111222322  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   ++|+.|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||.
T Consensus       139 -------------l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  205 (260)
T PRK05809        139 -------------ITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPI  205 (260)
T ss_pred             -------------CCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHH
Confidence                         7778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                       ++.+|+.++........+.+..+......        ....+|++||+|.|.++
T Consensus       206 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~  260 (260)
T PRK05809        206 AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFKNK  260 (260)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence             99999999876554443333222111111        11269999999999874

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=1.6e-50  Score=378.86  Aligned_cols=246  Identities=21%  Similarity=0.353  Sum_probs=204.8

Q ss_pred             hhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC----
Q psy9494          11 LRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD----   86 (314)
Q Consensus        11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~----   86 (314)
                      +.....+..+.+++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....    
T Consensus         4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~   83 (275)
T PLN02664          4 YKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSS   83 (275)
T ss_pred             ccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhccccccc
Confidence            3444455666789999999999999999999999999999999999999999999999999999999998753210    


Q ss_pred             -c-----hhHH----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccch
Q psy9494          87 -T-----KLFD----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGV  154 (314)
Q Consensus        87 -~-----~~~~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~  154 (314)
                       .     ....    .+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|           
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G-----------  152 (275)
T PLN02664         84 GDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLA-----------  152 (275)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhC-----------
Confidence             0     1111    11222222  89999999999999999999999999999999999999999999           


Q ss_pred             hhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHH
Q psy9494         155 VLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEA  233 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a  233 (314)
                                               +.|+.|++++|++++|..+|++++++|++++|+||+++||||+++|+ +++.+.+
T Consensus       153 -------------------------l~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~  207 (275)
T PLN02664        153 -------------------------ITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGV  207 (275)
T ss_pred             -------------------------CCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHH
Confidence                                     77788999999999999999999999999999999999999999995 8899999


Q ss_pred             HHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         234 MTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       234 ~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      .+++++|++.||. ++.+|+.++........+....+......        ....+|++||+|.|.++
T Consensus       208 ~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~  275 (275)
T PLN02664        208 RLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFAKL  275 (275)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence            9999999999999 99999999876544433333222111111        11269999999999864

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-50  Score=375.22  Aligned_cols=244  Identities=25%  Similarity=0.360  Sum_probs=206.8

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC-CccEEEEEcCCCCccccCCcccccCCCCc----
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDT-ESPLAILYGQEGNFCSGFDLHELDENPDT----   87 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~----   87 (314)
                      .|+.+.++++++|++|+||||+++|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++......    
T Consensus         2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T PRK05981          2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG   81 (266)
T ss_pred             CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence            4677999999999999999999999999999999999999999876 49999999999999999999987532110    


Q ss_pred             -h----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          88 -K----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        88 -~----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                       .    ....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                 
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG-----------------  144 (266)
T PRK05981         82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIG-----------------  144 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcC-----------------
Confidence             1    11112223332  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         +.|++|+++++++++|+.+|++++++|+.++|+||+++|||++++|++++.+++.++++++
T Consensus       145 -------------------~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l  205 (266)
T PRK05981        145 -------------------LVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHEL  205 (266)
T ss_pred             -------------------CCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHH
Confidence                               7778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +..||. ++.+|+.++........+....+.......        ...+|++||+|.|+++
T Consensus       206 ~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~~  266 (266)
T PRK05981        206 ANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQFKGR  266 (266)
T ss_pred             HcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence            999998 999999998765544433333222211111        1269999999999763

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-50  Score=375.83  Aligned_cols=244  Identities=23%  Similarity=0.336  Sum_probs=206.3

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCc-hh-
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDT-KL-   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-~~-   89 (314)
                      ..+.|.++++++|++|+||||+++|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++...... .. 
T Consensus         9 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~   88 (269)
T PRK06127          9 PTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV   88 (269)
T ss_pred             CCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence            345688999999999999999999999999999999999999999999999999998 799999999987542111 11 


Q ss_pred             ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                         .......+..  .+||||||+|||+|+|||++|+++||+|||+++++|++||.++|                     
T Consensus        89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~G---------------------  147 (269)
T PRK06127         89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLG---------------------  147 (269)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhC---------------------
Confidence               1111222222  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..|
T Consensus       148 ---------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~  212 (269)
T PRK06127        148 ---------------LGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA  212 (269)
T ss_pred             ---------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC
Confidence                           67788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++........+....+.......        ...+|++||+|.|+++
T Consensus       213 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~~~  269 (269)
T PRK06127        213 PLTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFKGR  269 (269)
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence            99 999999998765544333322221111111        1269999999999874

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=2.6e-50  Score=372.83  Aligned_cols=235  Identities=27%  Similarity=0.406  Sum_probs=199.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCCch---hHHHHHHHH
Q psy9494          22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPDTK---LFDDFREFL   97 (314)
Q Consensus        22 ~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~---~~~~~~~~~   97 (314)
                      +++|++||||||++.|+||.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++.......   ....+...+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF   81 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998 58999999999875422211   111122223


Q ss_pred             hc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494          98 QK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS  175 (314)
Q Consensus        98 ~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                                
T Consensus        82 ~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G--------------------------------  129 (251)
T PLN02600         82 SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLA--------------------------------  129 (251)
T ss_pred             HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccC--------------------------------
Confidence            32  89999999999999999999999999999999999999999999                                


Q ss_pred             ccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHHH
Q psy9494         176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRATV  254 (314)
Q Consensus       176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~  254 (314)
                          +.|++|++++|++++|+.+|++|+++|++++|+||+++||||+++|++++++++.+++++|++.||. ++.+|+.+
T Consensus       130 ----l~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l  205 (251)
T PLN02600        130 ----IIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAI  205 (251)
T ss_pred             ----cCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                7778899999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         255 LSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +........+....+.......        ...+|+|||+|.|+++
T Consensus       206 ~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~  251 (251)
T PLN02600        206 NEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYTGK  251 (251)
T ss_pred             HHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence            8765544443333221111111        1269999999999874

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-50  Score=373.02  Aligned_cols=242  Identities=26%  Similarity=0.383  Sum_probs=205.1

Q ss_pred             ccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchh---
Q psy9494          15 SSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKL---   89 (314)
Q Consensus        15 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~---   89 (314)
                      ++|.+++ +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++........   
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   82 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHA   82 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHH
Confidence            5788886 789999999999999999999999999999999999999999999999 59999999998754222111   


Q ss_pred             HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        83 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G------------------------  138 (260)
T PRK07657         83 VSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLA------------------------  138 (260)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccC------------------------
Confidence            1112223332  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++++++.+++++|+..||. 
T Consensus       139 ------------~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a  206 (260)
T PRK07657        139 ------------IIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIA  206 (260)
T ss_pred             ------------cCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHH
Confidence                        7778899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++........+....+......        ....+|++||+|.|+|+
T Consensus       207 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~~~~  260 (260)
T PRK07657        207 VRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYKGE  260 (260)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence            99999999876544333322222111111        11269999999999875

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=4.1e-50  Score=372.51  Aligned_cols=242  Identities=24%  Similarity=0.269  Sum_probs=200.0

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch--hH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK--LF   90 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~~   90 (314)
                      |+.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......  ..
T Consensus         1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   80 (256)
T TIGR03210         1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIG   80 (256)
T ss_pred             CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHH
Confidence            45688899999999999999999999999999999999999999999999999998 7999999999874321111  11


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      ..+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                         
T Consensus        81 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G-------------------------  135 (256)
T TIGR03210        81 LPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVG-------------------------  135 (256)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEeccccccc-------------------------
Confidence            112222322  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|.++++++|++++|+.+|++++++|++++|+||+++||||+++|.+++.+++.+++++|++.||. +
T Consensus       136 -----------~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~  204 (256)
T TIGR03210       136 -----------SVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAI  204 (256)
T ss_pred             -----------ccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHH
Confidence                       4444567889999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhch--HHHHHHHH--HHH---HhhhHHHHHHhcCCCCCCC
Q psy9494         248 LADRATVLSECETC--REEWMSER--KHY---IGISFELKFLQKKKKAKNG  291 (314)
Q Consensus       248 ~~~K~~~~~~~~~~--~~~~~~~~--~~~---~~~~~~~af~ekr~p~~~~  291 (314)
                      +.+|+.++......  .+....+.  ...   .......+|++||+|.|++
T Consensus       205 ~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~  255 (256)
T TIGR03210       205 AIAKRSFNMDTAHQRGIAGMGMYALKLYYDTAESREGVKAFQEKRKPEFRK  255 (256)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHccChhHHHHHHHHhccCCCCCCC
Confidence            99999998653321  11111000  000   0111126999999999975

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=3.1e-50  Score=373.94  Aligned_cols=240  Identities=23%  Similarity=0.310  Sum_probs=200.8

Q ss_pred             ccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC--Cch-h
Q psy9494          15 SSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP--DTK-L   89 (314)
Q Consensus        15 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~-~   89 (314)
                      +.+.+++ +++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....  ... .
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV   81 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence            4578888 899999999999999999999999999999999999999999999999 7999999998764211  111 0


Q ss_pred             -HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          90 -FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        90 -~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                       ...+..++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        82 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------------  138 (259)
T TIGR01929        82 HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVG-----------------------  138 (259)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccc-----------------------
Confidence             0111222222  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   +.|++|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||.
T Consensus       139 -------------~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  205 (259)
T TIGR01929       139 -------------SFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPM  205 (259)
T ss_pred             -------------cCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHH
Confidence                         6677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG  291 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~  291 (314)
                       ++.+|+.++...... ......+......        ....+|++||+|.|++
T Consensus       206 a~~~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~  258 (259)
T TIGR01929       206 AIRMLKAALNADCDGQ-AGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFSK  258 (259)
T ss_pred             HHHHHHHHHHhhhccc-hHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Confidence             999999998654322 2222111111111        1126999999999975

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.3e-50  Score=373.56  Aligned_cols=243  Identities=19%  Similarity=0.216  Sum_probs=203.4

Q ss_pred             ccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-h--
Q psy9494          13 LVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-K--   88 (314)
Q Consensus        13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~--   88 (314)
                      .++.|.+++ +++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++...... .  
T Consensus         9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   88 (268)
T PRK07327          9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVR   88 (268)
T ss_pred             CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHH
Confidence            456788887 578999999999999999999999999999999999999999999999999999999987542211 1  


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        ......+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        89 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------  147 (268)
T PRK07327         89 ARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLG---------------------  147 (268)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccC---------------------
Confidence              11112222322  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     ++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++++++.+++++|++.|
T Consensus       148 ---------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  212 (268)
T PRK07327        148 ---------------VAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS  212 (268)
T ss_pred             ---------------CCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC
Confidence                           77788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhc---hHHHHHHHHHH-HH---hhhHHHHHHhcCCCCCCC
Q psy9494         245 QS-MLADRATVLSECET---CREEWMSERKH-YI---GISFELKFLQKKKKAKNG  291 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~---~~~~~~~~~~~-~~---~~~~~~af~ekr~p~~~~  291 (314)
                      |. ++.+|+.++.....   ..+.....+.. ..   ......+|++||+|.|+|
T Consensus       213 ~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~eg~~af~ekr~p~~~~  267 (268)
T PRK07327        213 QTAIRWTKYALNNWLRMAGPTFDTSLALEFMGFSGPDVREGLASLREKRAPDFPG  267 (268)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHccChhHHHHHHHHHhcCCCCCCC
Confidence            99 99999999864221   12221111111 10   111126999999999987

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=6.9e-50  Score=374.34  Aligned_cols=243  Identities=23%  Similarity=0.311  Sum_probs=203.3

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC--Cchh
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP--DTKL   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~   89 (314)
                      .++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....  ....
T Consensus        11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   90 (273)
T PRK07396         11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDG   90 (273)
T ss_pred             CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhh
Confidence            456788999999999999999999999999999999999999999999999999999 6999999999864311  1110


Q ss_pred             HH--HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          90 FD--DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        90 ~~--~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                      ..  .....+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                      
T Consensus        91 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------------  148 (273)
T PRK07396         91 VPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVG----------------------  148 (273)
T ss_pred             hhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEeccccccc----------------------
Confidence            11  11122222  89999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|+++++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|++.||
T Consensus       149 --------------l~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~  214 (273)
T PRK07396        149 --------------SFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSP  214 (273)
T ss_pred             --------------ccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCH
Confidence                          666788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHH-HHHHH-------HhhhHHHHHHhcCCCCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMS-ERKHY-------IGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~af~ekr~p~~~~~  292 (314)
                      . ++.+|+.++..... .+.... +....       .......+|++||+|.|.+.
T Consensus       215 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~~  269 (273)
T PRK07396        215 MALRCLKAALNADCDG-QAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSKF  269 (273)
T ss_pred             HHHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCCC
Confidence            9 99999999865432 222211 11110       00111269999999999874

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.1e-50  Score=373.89  Aligned_cols=244  Identities=24%  Similarity=0.332  Sum_probs=205.4

Q ss_pred             ccccEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---
Q psy9494          13 LVSSVCTKKIL-NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---   88 (314)
Q Consensus        13 ~~~~v~~~~~~-~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---   88 (314)
                      .++.|.+++++ +|++||||||++.|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++......+   
T Consensus         3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   82 (272)
T PRK06210          3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR   82 (272)
T ss_pred             CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence            45778999988 99999999999999999999999999999999999999999999999999999999875422110   


Q ss_pred             ------hHH----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhh
Q psy9494          89 ------LFD----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVL  156 (314)
Q Consensus        89 ------~~~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~  156 (314)
                            ...    .+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|             
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G-------------  149 (272)
T PRK06210         83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRG-------------  149 (272)
T ss_pred             cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcC-------------
Confidence                  000    11112222  89999999999999999999999999999999999999999999             


Q ss_pred             hhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494         157 YALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR  236 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~  236 (314)
                                             +.|++|+++++++++|+.+|++|+++|+.++|+||+++||||+++|++++.+++.++
T Consensus       150 -----------------------l~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  206 (272)
T PRK06210        150 -----------------------LIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAY  206 (272)
T ss_pred             -----------------------CCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence                                   777889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         237 AIQMSKL-SQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       237 a~~la~~-~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +++|++. +|. +..+|+.++........+.+..+.......        ...+|++||+|.|.++
T Consensus       207 a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~  272 (272)
T PRK06210        207 AEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRFPGL  272 (272)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Confidence            9999985 888 999999998765444333332221111111        1279999999999864

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.7e-50  Score=370.37  Aligned_cols=241  Identities=21%  Similarity=0.282  Sum_probs=202.3

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-C-chh
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-D-TKL   89 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~-~~~   89 (314)
                      ++|+.|.++++++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|.|++++.... . ...
T Consensus         1 ~~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   79 (257)
T PRK06495          1 MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL   79 (257)
T ss_pred             CCcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence            35678999999999999999998 59999999999999999999999999999999999999999999875321 1 111


Q ss_pred             H---HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 F---DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ~---~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                      .   ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G---------------------  138 (257)
T PRK06495         80 RAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVG---------------------  138 (257)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccC---------------------
Confidence            1   112222332  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.   |+++++++++|+.+|++|+++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus       139 ---------------l~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~  200 (257)
T PRK06495        139 ---------------LA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS  200 (257)
T ss_pred             ---------------cc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC
Confidence                           54   456789999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++........+....+......        ....+|++||+|.|+++
T Consensus       201 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~~~  257 (257)
T PRK06495        201 PLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFKGR  257 (257)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCCCC
Confidence            99 99999999876544443333222111111        11269999999999874

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-49  Score=369.36  Aligned_cols=243  Identities=26%  Similarity=0.376  Sum_probs=207.9

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc--hhHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT--KLFD   91 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~   91 (314)
                      ...+.++++++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|+|++++......  ....
T Consensus         4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (259)
T PRK06688          4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELA   83 (259)
T ss_pred             CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999987643222  1122


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                          
T Consensus        84 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G--------------------------  137 (259)
T PRK06688         84 PVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLG--------------------------  137 (259)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcC--------------------------
Confidence            23333333  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                ++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus       138 ----------~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~  207 (259)
T PRK06688        138 ----------LCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR  207 (259)
T ss_pred             ----------CCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence                      7778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      .+|+.++.......++.+..+......        ....+|++||+|.|++.
T Consensus       208 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~~~~  259 (259)
T PRK06688        208 YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDFTGF  259 (259)
T ss_pred             HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            999999876554444333332221111        11269999999999763

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-50  Score=371.73  Aligned_cols=241  Identities=22%  Similarity=0.263  Sum_probs=203.3

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh----
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL----   89 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~----   89 (314)
                      ++.|.++++++|++||||||++.|++|.+|+.+|.++++++ .|+++|+|||+|.|++||+|.|++++........    
T Consensus         5 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (260)
T PRK07659          5 MESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV   83 (260)
T ss_pred             CceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence            35689999999999999999999999999999999999999 5889999999999999999999998754222111    


Q ss_pred             HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ...+.+.+..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        84 ~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------------  139 (260)
T PRK07659         84 MNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIG------------------------  139 (260)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcC------------------------
Confidence            1122222222  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  ++|++|++++|++++|+.+|++++++|+.++|+||+++||||+++ ++++.+++.+++++|++.||. 
T Consensus       140 ------------l~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a  206 (260)
T PRK07659        140 ------------LIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKA  206 (260)
T ss_pred             ------------CCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHH
Confidence                        777889999999999999999999999999999999999999999 788999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++.......++....+......        ....+|++||+|.|+++
T Consensus       207 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~  260 (260)
T PRK07659        207 MIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVFKGE  260 (260)
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence            99999999876544333322222111111        11269999999999864

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-49  Score=369.83  Aligned_cols=240  Identities=21%  Similarity=0.296  Sum_probs=204.6

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--Cch----
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--DTK----   88 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~----   88 (314)
                      +.+.++++++|++|+||||++.|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|.|++++....  ...    
T Consensus         3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~   82 (260)
T PRK07511          3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAA   82 (260)
T ss_pred             CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999875421  111    


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ....+.+++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G-----------------------  139 (260)
T PRK07511         83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVG-----------------------  139 (260)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccC-----------------------
Confidence            11222333333  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   ++|++|+++++++++|+.++++|+++|++++|+||+++||||++++++++.+++.++++++++.||.
T Consensus       140 -------------l~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~  206 (260)
T PRK07511        140 -------------LTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPN  206 (260)
T ss_pred             -------------cCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHH
Confidence                         7788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCC
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKN  290 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~  290 (314)
                       +..+|+.++........+....+......        ....+|++||+|.|+
T Consensus       207 ~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~~  259 (260)
T PRK07511        207 ALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDYK  259 (260)
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCCC
Confidence             99999999876554433333222111111        112799999999985

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-49  Score=373.46  Aligned_cols=247  Identities=22%  Similarity=0.292  Sum_probs=204.6

Q ss_pred             hhhccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC---
Q psy9494          10 MLRLVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP---   85 (314)
Q Consensus        10 ~~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---   85 (314)
                      |-..++.|.++. +++|++|+||||+++|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++....   
T Consensus         4 ~~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~   83 (276)
T PRK05864          4 YRSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVE   83 (276)
T ss_pred             CCCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccc
Confidence            334566788887 7899999999999999999999999999999999999999999999999999999999864211   


Q ss_pred             ---Cchh----HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhh
Q psy9494          86 ---DTKL----FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVL  156 (314)
Q Consensus        86 ---~~~~----~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~  156 (314)
                         ....    ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|             
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G-------------  150 (276)
T PRK05864         84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNG-------------  150 (276)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccC-------------
Confidence               0010    1112222222  89999999999999999999999999999999999999999999             


Q ss_pred             hhcccccccccccccccccccccCCC-CchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHH
Q psy9494         157 YALHVPRTQLKHSLRDNLSRDLAIPT-CDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT  235 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~  235 (314)
                                             ++| +.|++++|++++|+.+|++++++|++++|+||+++||||++++++++.+++.+
T Consensus       151 -----------------------l~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  207 (276)
T PRK05864        151 -----------------------LTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA  207 (276)
T ss_pred             -----------------------CCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHH
Confidence                                   554 78889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHH-HHHHHHHHHhhhhc-hHHHHHHHHHH---HH------hhhHHHHHHhcCCCCCCCC
Q psy9494         236 RAIQMSKLSQS-MLADRATVLSECET-CREEWMSERKH---YI------GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       236 ~a~~la~~~~~-~~~~K~~~~~~~~~-~~~~~~~~~~~---~~------~~~~~~af~ekr~p~~~~~  292 (314)
                      ++++|+..||. ++.+|+.++..... ...+....+..   ..      ......+|++||+|.|++.
T Consensus       208 ~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~  275 (276)
T PRK05864        208 IAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFTDD  275 (276)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence            99999999999 99999999865432 23322222211   00      0111269999999999764

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9e-50  Score=377.55  Aligned_cols=245  Identities=24%  Similarity=0.292  Sum_probs=204.5

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCC---C-----
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN---P-----   85 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~-----   85 (314)
                      ++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...   .     
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (296)
T PRK08260          3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP   82 (296)
T ss_pred             cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence            45688999999999999999999999999999999999999999999999999999999999999986420   0     


Q ss_pred             -------C-chhHHHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccc
Q psy9494          86 -------D-TKLFDDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLS  151 (314)
Q Consensus        86 -------~-~~~~~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~  151 (314)
                             . ......+    .+++..  .+||||||+|||+|+|||++|+++||+|||+++++|++||.++|        
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G--------  154 (296)
T PRK08260         83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRG--------  154 (296)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcC--------
Confidence                   0 0011111    122222  89999999999999999999999999999999999999999999        


Q ss_pred             cchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH
Q psy9494         152 SGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVG  231 (314)
Q Consensus       152 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~  231 (314)
                                                  +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+
T Consensus       155 ----------------------------l~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~  206 (296)
T PRK08260        155 ----------------------------IVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLP  206 (296)
T ss_pred             ----------------------------cCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHH
Confidence                                        7778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CHH-HHHHHHHHHhhhh--chHHHHHHHHHHHH-------hhhHHHHHHhcCCCCCCCCcC
Q psy9494         232 EAMTRAIQMSKL-SQS-MLADRATVLSECE--TCREEWMSERKHYI-------GISFELKFLQKKKKAKNGHLV  294 (314)
Q Consensus       232 ~a~~~a~~la~~-~~~-~~~~K~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~af~ekr~p~~~~~~~  294 (314)
                      ++.+++++|+.. +|. ++.+|+.++....  ........+.....       ......+|++||+|.|+++..
T Consensus       207 ~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~~~  280 (296)
T PRK08260        207 AARALAREIADNTSPVSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGKVS  280 (296)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCCCC
Confidence            999999999985 888 9999999987532  12222222211111       111126999999999999833

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.3e-49  Score=371.13  Aligned_cols=242  Identities=17%  Similarity=0.203  Sum_probs=201.3

Q ss_pred             cccEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC----ch
Q psy9494          14 VSSVCTKKI-LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD----TK   88 (314)
Q Consensus        14 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~----~~   88 (314)
                      |+.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....    ..
T Consensus         4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (265)
T PRK05674          4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTN   83 (265)
T ss_pred             cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhh
Confidence            677889885 7899999999999999999999999999999999999999999999999999999998743211    00


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        ....+.+++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        84 ~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G---------------------  142 (265)
T PRK05674         84 LDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIG---------------------  142 (265)
T ss_pred             hHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccC---------------------
Confidence              11122233332  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|+++++ ++++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..|
T Consensus       143 ---------------i~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  206 (265)
T PRK05674        143 ---------------LAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS  206 (265)
T ss_pred             ---------------CCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC
Confidence                           66665554 58999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHH-HHHH-HH-------HhhhHHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWM-SERK-HY-------IGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~-~~~~-~~-------~~~~~~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++........+.. .++. ..       .......+|++||+|.|.+.
T Consensus       207 p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~~~  264 (265)
T PRK05674        207 PQALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQTD  264 (265)
T ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCCCC
Confidence            99 99999999876554332221 1111 10       01111269999999999753

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=2.3e-49  Score=368.29  Aligned_cols=241  Identities=28%  Similarity=0.355  Sum_probs=202.1

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCc--hhHH
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDT--KLFD   91 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~~~~   91 (314)
                      +.+.++++++|++||||||+ .|++|.+|+++|.+++++++.|++||+|||||.| ++||+|+|++++......  ....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   81 (261)
T PRK03580          3 ESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGP   81 (261)
T ss_pred             ceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhh
Confidence            35889999999999999996 5999999999999999999999999999999998 799999999987532211  1111


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .....+..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                          
T Consensus        82 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------------  135 (261)
T PRK03580         82 GGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLG--------------------------  135 (261)
T ss_pred             hhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccC--------------------------
Confidence            11112222  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                ++|+.|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus       136 ----------~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  205 (261)
T PRK03580        136 ----------IVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA  205 (261)
T ss_pred             ----------cCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH
Confidence                      7778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHH-----HH----H---hhhHHHHHHhcCCCCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERK-----HY----I---GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~-----~~----~---~~~~~~af~ekr~p~~~~~  292 (314)
                      .+|+.++........+.+..+.     ..    .   ......+|++||+|.|+++
T Consensus       206 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~  261 (261)
T PRK03580        206 ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVWKGR  261 (261)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCCCCC
Confidence            9999998764443332222111     00    0   0111279999999999864

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=3e-49  Score=368.67  Aligned_cols=244  Identities=24%  Similarity=0.323  Sum_probs=203.4

Q ss_pred             ccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHH
Q psy9494          13 LVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFD   91 (314)
Q Consensus        13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   91 (314)
                      ..+.|.++. +++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus         7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   86 (265)
T PLN02888          7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKD   86 (265)
T ss_pred             CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhH
Confidence            345677775 7899999999999999999999999999999999999999999999999999999999764321111111


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      ...+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                          
T Consensus        87 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G--------------------------  140 (265)
T PLN02888         87 VETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFG--------------------------  140 (265)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCcccccc--------------------------
Confidence            11222222  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                ++|++|++++|++++|+.+|++++++|++++|+||+++||||++++++++.+++.+++++|++.+|. ++
T Consensus       141 ----------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  210 (265)
T PLN02888        141 ----------IFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL  210 (265)
T ss_pred             ----------CCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH
Confidence                      7778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHH-Hh---------hhHHHHHHhcCCCCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERKHY-IG---------ISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~af~ekr~p~~~~~  292 (314)
                      .+|+.++.............+... ..         .....+|++||+|....+
T Consensus       211 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~  264 (265)
T PLN02888        211 RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK  264 (265)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence            999999876554433332222111 11         111279999999875443

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-49  Score=366.62  Aligned_cols=213  Identities=37%  Similarity=0.594  Sum_probs=189.3

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH-
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD-   92 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~-   92 (314)
                      .+.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++........... 
T Consensus         2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   81 (254)
T PRK08259          2 SMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSG   81 (254)
T ss_pred             CceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhh
Confidence            3568899999999999999999999999999999999999999999999999999999999999998754221111100 


Q ss_pred             HHHHH--hcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFL--QKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~--~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      .....  ...+||||||+|||+|+|||++|+++||+|||+++++|++||.++|                           
T Consensus        82 ~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G---------------------------  134 (254)
T PRK08259         82 DGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWG---------------------------  134 (254)
T ss_pred             cchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccC---------------------------
Confidence            00001  1179999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               ++|.+|++++|++++|+.+|++++++|+.++|+||+++||||+++|.+++.+++.+++++|++.||. ++.
T Consensus       135 ---------l~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  205 (254)
T PRK08259        135 ---------VPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRA  205 (254)
T ss_pred             ---------CCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHH
Confidence                     7888899999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchH
Q psy9494         250 DRATVLSECETCR  262 (314)
Q Consensus       250 ~K~~~~~~~~~~~  262 (314)
                      +|+.++.......
T Consensus       206 ~K~~~~~~~~~~~  218 (254)
T PRK08259        206 DRLSALEQWGLPE  218 (254)
T ss_pred             HHHHHHHhhcCCH
Confidence            9999987644433

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=3e-49  Score=370.51  Aligned_cols=217  Identities=21%  Similarity=0.309  Sum_probs=193.4

Q ss_pred             hhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC--c
Q psy9494          10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD--T   87 (314)
Q Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~   87 (314)
                      |.+.|++|.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.....  .
T Consensus         3 ~~~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   82 (275)
T PRK09120          3 YENRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP   82 (275)
T ss_pred             cccccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccch
Confidence            34457889999999999999999999999999999999999999999999999999999999999999998643111  1


Q ss_pred             h-hHH----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          88 K-LFD----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        88 ~-~~~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                      . ...    ....++..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                 
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G-----------------  145 (275)
T PRK09120         83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWG-----------------  145 (275)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccC-----------------
Confidence            1 011    11222222  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         ++|++|++++|++++|+.+|++++++|+.++|+||+++|||++++|++++.+++.+++++|
T Consensus       146 -------------------l~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~l  206 (275)
T PRK09120        146 -------------------IPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKL  206 (275)
T ss_pred             -------------------CCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHH
Confidence                               7788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchH
Q psy9494         241 SKLSQS-MLADRATVLSECETCR  262 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~  262 (314)
                      +..||. ++.+|+.++.......
T Consensus       207 a~~~p~a~~~~K~~l~~~~~~~~  229 (275)
T PRK09120        207 LEKNPVVLRAAKDGFKRVRELTW  229 (275)
T ss_pred             HhCCHHHHHHHHHHHHHHHhCCH
Confidence            999999 9999999987655433

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-49  Score=368.45  Aligned_cols=241  Identities=20%  Similarity=0.286  Sum_probs=198.9

Q ss_pred             cccEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C-ch-
Q psy9494          14 VSSVCTKKI-LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D-TK-   88 (314)
Q Consensus        14 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~-   88 (314)
                      ++.+.++++ ++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++....  . .. 
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR   82 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence            456888885 689999999999999999999999999999999999999999999999999999999864311  1 11 


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        ....+..++..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~G---------------------  141 (262)
T PRK07468         83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLG---------------------  141 (262)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccC---------------------
Confidence              11112223332  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|+++++ +++|..+|++|+++|++++|+||+++||||+++|.+++.+++.++++++++.|
T Consensus       142 ---------------l~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~  205 (262)
T PRK07468        142 ---------------LIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA  205 (262)
T ss_pred             ---------------CCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC
Confidence                           66677788755 55999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG  291 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~  291 (314)
                      |. ++.+|+.++.......+.....+......        ....+|++||+|.|.+
T Consensus       206 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~  261 (262)
T PRK07468        206 PGAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWRG  261 (262)
T ss_pred             HHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence            99 99999998765333322222221111111        1126999999999976

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=2.6e-49  Score=368.24  Aligned_cols=243  Identities=21%  Similarity=0.234  Sum_probs=202.5

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--CCCccccCCcccccCCCCc--h
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--EGNFCSGFDLHELDENPDT--K   88 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~--~   88 (314)
                      .++.+.++++++|++||||||++.|++|.+|+.+|.++++++++|+ +|+|||||.  |++||+|.|++++......  .
T Consensus         2 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~   80 (261)
T PRK11423          2 SMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLS   80 (261)
T ss_pred             CccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHH
Confidence            4667899999999999999999999999999999999999999987 999999986  3899999999987432111  1


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ....+.+.+..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        81 ~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------------  137 (261)
T PRK11423         81 YDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLG-----------------------  137 (261)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcC-----------------------
Confidence            11222333333  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   ++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+.+.+++++|++.+|.
T Consensus       138 -------------l~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~  204 (261)
T PRK11423        138 -------------VPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPL  204 (261)
T ss_pred             -------------CCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHH
Confidence                         7778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhh-chH-HHHHHHH-HHH-------HhhhHHHHHHhcCCCCCCCC
Q psy9494         247 -MLADRATVLSECE-TCR-EEWMSER-KHY-------IGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 -~~~~K~~~~~~~~-~~~-~~~~~~~-~~~-------~~~~~~~af~ekr~p~~~~~  292 (314)
                       ++.+|+.++.... ... ......+ ...       .......+|++||+|.|+++
T Consensus       205 a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~~~~  261 (261)
T PRK11423        205 AIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVFVGH  261 (261)
T ss_pred             HHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCCCCC
Confidence             9999999975432 111 1211111 110       01111269999999999874

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-49  Score=365.85  Aligned_cols=238  Identities=21%  Similarity=0.344  Sum_probs=198.0

Q ss_pred             hccccEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch-
Q psy9494          12 RLVSSVCTK-KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK-   88 (314)
Q Consensus        12 ~~~~~v~~~-~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-   88 (314)
                      +...++.++ .+++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|.|++++....... 
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~   82 (256)
T PRK06143          3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASA   82 (256)
T ss_pred             cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhH
Confidence            444567777 4688999999999999999999999999999999999999999999998 7999999999875422111 


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        ....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G---------------------  141 (256)
T PRK06143         83 EAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVG---------------------  141 (256)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccC---------------------
Confidence              11122233333  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +| ..++++++++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..|
T Consensus       142 ---------------~p-~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  205 (256)
T PRK06143        142 ---------------IP-SVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG  205 (256)
T ss_pred             ---------------CC-CccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC
Confidence                           74 56778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKK  286 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~  286 (314)
                      |. ++.+|+.++........+....+......        ....+|++||+
T Consensus       206 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        206 PQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence            99 99999999876554443333222111111        11269999875

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.4e-49  Score=362.97  Aligned_cols=236  Identities=23%  Similarity=0.327  Sum_probs=197.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF   96 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   96 (314)
                      |.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++...........+...
T Consensus         2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   81 (248)
T PRK06072          2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPI   81 (248)
T ss_pred             eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999987532111112222233


Q ss_pred             Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494          97 LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL  174 (314)
Q Consensus        97 ~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      +..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                               
T Consensus        82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~G-------------------------------  130 (248)
T PRK06072         82 IREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLG-------------------------------  130 (248)
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcC-------------------------------
Confidence            322  89999999999999999999999999999999999999999999                               


Q ss_pred             cccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHH
Q psy9494         175 SRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRAT  253 (314)
Q Consensus       175 ~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~  253 (314)
                           ++|+.|+++++++++|. ++++++++|++++|+||+++||||++   +++.+++.++|++|++.||. ++.+|+.
T Consensus       131 -----l~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~  201 (248)
T PRK06072        131 -----LASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRM  201 (248)
T ss_pred             -----cCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                 67788899999999996 89999999999999999999999963   46789999999999999999 9999999


Q ss_pred             HHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         254 VLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      ++.......++....+.......        ...+|++||+|.|.++
T Consensus       202 l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~  248 (248)
T PRK06072        202 INLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFKGI  248 (248)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Confidence            98765444433332221111111        1269999999999874

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-48  Score=363.39  Aligned_cols=240  Identities=21%  Similarity=0.326  Sum_probs=201.7

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---h
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---L   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~   89 (314)
                      +++.+.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......   .
T Consensus         1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (262)
T PRK07509          1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLL   80 (262)
T ss_pred             CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999875422111   0


Q ss_pred             HH-------HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          90 FD-------DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        90 ~~-------~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                      ..       .+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------  143 (262)
T PRK07509         81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWG-----------------  143 (262)
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccC-----------------
Confidence            00       01112211  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         ++|++|+++++++++|+.+|++++++|++++|+||+++||||++++  ++.+++.+++++|
T Consensus       144 -------------------l~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l  202 (262)
T PRK07509        144 -------------------LVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREI  202 (262)
T ss_pred             -------------------CCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHH
Confidence                               7778899999999999999999999999999999999999999995  4788999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKN  290 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~  290 (314)
                      ++.||. +..+|+.++........+....+......        ....+|+|||+|.|.
T Consensus       203 ~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~  261 (262)
T PRK07509        203 AQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKFL  261 (262)
T ss_pred             HhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence            999999 99999999876554433332222111111        112699999999986

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.3e-48  Score=374.50  Aligned_cols=248  Identities=22%  Similarity=0.299  Sum_probs=204.9

Q ss_pred             hHhhhccccEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCC
Q psy9494           8 RAMLRLVSSVCTKK--ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDEN   84 (314)
Q Consensus         8 ~~~~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~   84 (314)
                      ......++.|.+++  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...
T Consensus        58 ~~~~~~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~  137 (327)
T PLN02921         58 DGSGKEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD  137 (327)
T ss_pred             cCCccCCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc
Confidence            33334567788887  589999999999999999999999999999999999999999999999 899999999986432


Q ss_pred             C--CchhHHH--HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494          85 P--DTKLFDD--FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA  158 (314)
Q Consensus        85 ~--~~~~~~~--~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~  158 (314)
                      .  .......  ..+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|               
T Consensus       138 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~G---------------  202 (327)
T PLN02921        138 GYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVG---------------  202 (327)
T ss_pred             cccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccC---------------
Confidence            1  1111111  1112222  89999999999999999999999999999999999999999999               


Q ss_pred             cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                           +.|.++++++|++++|..+|++++++|+.++|+||+++||||+++|.+++.+++.++++
T Consensus       203 ---------------------l~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~  261 (327)
T PLN02921        203 ---------------------SFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCR  261 (327)
T ss_pred             ---------------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHH
Confidence                                 66677888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHH--------hhhHHHHHHhcCCCCCCCC
Q psy9494         239 QMSKLSQS-MLADRATVLSECETCREEWMSERKHYI--------GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~af~ekr~p~~~~~  292 (314)
                      +|++.||. ++.+|+.++..... ......++....        ......+|+|||+|.|++.
T Consensus       262 ~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~~~  323 (327)
T PLN02921        262 EILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFSKF  323 (327)
T ss_pred             HHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence            99999999 99999999876432 222222211111        1111269999999999874

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-48  Score=362.10  Aligned_cols=237  Identities=16%  Similarity=0.193  Sum_probs=200.3

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC-c--hh-
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD-T--KL-   89 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~--~~-   89 (314)
                      ++++.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++..... .  .. 
T Consensus         1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK07260          1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL   80 (255)
T ss_pred             CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence            3568889999999999999999999999999999999999999999999999999999999999998753211 1  11 


Q ss_pred             ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                         ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~G---------------------  139 (255)
T PRK07260         81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVG---------------------  139 (255)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcC---------------------
Confidence               1112222222  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     ++|+.|+++++++++|+.++++|+++|++++|+||+++||||+++|++++.+++.++++++++.+
T Consensus       140 ---------------l~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  204 (255)
T PRK07260        140 ---------------LAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS  204 (255)
T ss_pred             ---------------CCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC
Confidence                           77788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHh--------hhHHHHHHhcCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIG--------ISFELKFLQKKK  286 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~af~ekr~  286 (314)
                      |. ++.+|+.++.......+.....+.....        .....+|++||+
T Consensus       205 ~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        205 SNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence            99 9999999987755444333222211111        111269999875

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-48  Score=369.01  Aligned_cols=241  Identities=19%  Similarity=0.227  Sum_probs=194.6

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCccc-ccC---C--CCc
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE-LDE---N--PDT   87 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~-~~~---~--~~~   87 (314)
                      ++.+.++++++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||.|++||+|+||++ +..   .  ...
T Consensus         4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~   83 (298)
T PRK12478          4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG   83 (298)
T ss_pred             ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence            4578899999999999999999999999999999999999999999999999999999999999986 211   0  000


Q ss_pred             --hhHHHH----------HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeecccccc-cccccccccc
Q psy9494          88 --KLFDDF----------REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRF-VYLKDSLLSS  152 (314)
Q Consensus        88 --~~~~~~----------~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~-G~~~~~~~~~  152 (314)
                        .....+          ...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |         
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G---------  154 (298)
T PRK12478         84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWG---------  154 (298)
T ss_pred             ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccccccc---------
Confidence              000011          111222  8999999999999999999999999999999999999999997 8         


Q ss_pred             chhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH
Q psy9494         153 GVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGE  232 (314)
Q Consensus       153 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~  232 (314)
                                                 +.+  ++++  .+++|..+|++|+++|++++|+||+++||||++||++++.++
T Consensus       155 ---------------------------~~~--~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~  203 (298)
T PRK12478        155 ---------------------------AYL--TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEAR  203 (298)
T ss_pred             ---------------------------CCc--hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHH
Confidence                                       443  3333  356999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHH-HHHHHHHHHhhhh-chHHHHHHHHHHHHhh----------------hHHHHHHhcCCCCCCCCcC
Q psy9494         233 AMTRAIQMSKLSQS-MLADRATVLSECE-TCREEWMSERKHYIGI----------------SFELKFLQKKKKAKNGHLV  294 (314)
Q Consensus       233 a~~~a~~la~~~~~-~~~~K~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~af~ekr~p~~~~~~~  294 (314)
                      +.+++++|+..||. ++.+|+.++.... ...++.+..+......                ....||+|||+|.|.+.-.
T Consensus       204 a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~~~  283 (298)
T PRK12478        204 VAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDYSQ  283 (298)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence            99999999999999 9999999987644 2222222111110000                1226999999999998633

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=2.4e-48  Score=360.05  Aligned_cols=236  Identities=18%  Similarity=0.223  Sum_probs=191.6

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF   96 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   96 (314)
                      |.++++++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++...........+.+.
T Consensus         3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   81 (251)
T TIGR03189         3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKL   81 (251)
T ss_pred             EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHH
Confidence            678889999999999997 5999999999999999999999999999999999999999999985321111111122223


Q ss_pred             Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494          97 LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL  174 (314)
Q Consensus        97 ~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      +..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                               
T Consensus        82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G-------------------------------  130 (251)
T TIGR03189        82 VIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLG-------------------------------  130 (251)
T ss_pred             HHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcC-------------------------------
Confidence            322  89999999999999999999999999999999999999999999                               


Q ss_pred             cccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH-HHHHHhCCHH-HHHHHH
Q psy9494         175 SRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR-AIQMSKLSQS-MLADRA  252 (314)
Q Consensus       175 ~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~-a~~la~~~~~-~~~~K~  252 (314)
                           +.|. +++++|++++|+.+|++++++|++++|+||+++|||++++++++  +++.++ +++|+..||. ++.+|+
T Consensus       131 -----l~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~  202 (251)
T TIGR03189       131 -----VFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVR  202 (251)
T ss_pred             -----CCCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHH
Confidence                 5444 45789999999999999999999999999999999999998543  566666 6899999999 999999


Q ss_pred             HHHhhhhchHHHHHH-HHHHHH--------hhhHHHHHHhcCCCCCCCC
Q psy9494         253 TVLSECETCREEWMS-ERKHYI--------GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       253 ~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~af~ekr~p~~~~~  292 (314)
                      .++.......++... .+....        ......+|++||+|.|.++
T Consensus       203 ~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~  251 (251)
T TIGR03189       203 AARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWEDR  251 (251)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCCCC
Confidence            998765443332211 111110        1111279999999999874

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-48  Score=361.58  Aligned_cols=241  Identities=23%  Similarity=0.267  Sum_probs=203.0

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hHH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LFD   91 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~   91 (314)
                      .++.+.++++++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus         2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (258)
T PRK06190          2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQD   81 (258)
T ss_pred             CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999875432111 111


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||.++|                          
T Consensus        82 ~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------------  135 (258)
T PRK06190         82 ALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVG--------------------------  135 (258)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccC--------------------------
Confidence            12223332  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                ++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++
T Consensus       136 ----------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  205 (258)
T PRK06190        136 ----------ILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR  205 (258)
T ss_pred             ----------cCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH
Confidence                      7778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHHhhhHH---HHHHhcCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERKHYIGISFE---LKFLQKKKKAK  289 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~af~ekr~p~~  289 (314)
                      .+|+.++........+....+.......+.   .+|++.|...+
T Consensus       206 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~  249 (258)
T PRK06190        206 ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAV  249 (258)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            999999877655555444433332222222   25555544443

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-48  Score=357.96  Aligned_cols=207  Identities=22%  Similarity=0.358  Sum_probs=186.6

Q ss_pred             ccEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC-c-hh
Q psy9494          15 SSVCTKKILN---ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD-T-KL   89 (314)
Q Consensus        15 ~~v~~~~~~~---v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~-~~   89 (314)
                      +.|.++++++   |++||||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|.|++++..... . ..
T Consensus         3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   82 (251)
T PRK06023          3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSF   82 (251)
T ss_pred             ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhh
Confidence            4588888774   99999999999999999999999999999999999999999999999999999998753211 1 11


Q ss_pred             HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ...+.+++..  ++||||||+|||+|+|||++++++||||||+++++|++||.++|                        
T Consensus        83 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~G------------------------  138 (251)
T PRK06023         83 GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLA------------------------  138 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccC------------------------
Confidence            2222333333  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|+++++++++|+.+|++++++|+.++|+||+++|||++++|.+++.+++.+++++|+..||. 
T Consensus       139 ------------l~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a  206 (251)
T PRK06023        139 ------------LVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQA  206 (251)
T ss_pred             ------------CCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHH
Confidence                        7778899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhh
Q psy9494         247 MLADRATVLSE  257 (314)
Q Consensus       247 ~~~~K~~~~~~  257 (314)
                      ++.+|+.++..
T Consensus       207 ~~~~K~~l~~~  217 (251)
T PRK06023        207 LQIARDLMRGP  217 (251)
T ss_pred             HHHHHHHHHhc
Confidence            99999999764

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6e-48  Score=355.64  Aligned_cols=231  Identities=28%  Similarity=0.419  Sum_probs=191.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF   96 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   96 (314)
                      +.++++++|++||||||++.|++|.+|+.+|.++++++++| ++|+|||||.|++||+|.|+++...  .......+.+.
T Consensus         2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~--~~~~~~~~~~~   78 (243)
T PRK07854          2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY--ADDFPDALIEM   78 (243)
T ss_pred             ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh--HHHHHHHHHHH
Confidence            56788999999999999999999999999999999999965 8999999999999999999985321  11111222223


Q ss_pred             Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494          97 LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL  174 (314)
Q Consensus        97 ~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      +..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                               
T Consensus        79 ~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G-------------------------------  127 (243)
T PRK07854         79 LHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYG-------------------------------  127 (243)
T ss_pred             HHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccc-------------------------------
Confidence            332  89999999999999999999999999999999999999999999                               


Q ss_pred             cccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHH
Q psy9494         175 SRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRAT  253 (314)
Q Consensus       175 ~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~  253 (314)
                           ++|++|++++|++++|+.+|++++++|++++|+||+++||||++++   + +++.+++++|++.||. +..+|+.
T Consensus       128 -----~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~~~K~~  198 (243)
T PRK07854        128 -----IALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLAPLALQHAKRV  198 (243)
T ss_pred             -----cCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence                 7778899999999999999999999999999999999999999975   3 3899999999999999 9999999


Q ss_pred             HHhhhhchHHHHHHHHHHHHh--------hhHHHHHHhcCCCCCCCC
Q psy9494         254 VLSECETCREEWMSERKHYIG--------ISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~af~ekr~p~~~~~  292 (314)
                      ++..  ...++....+.....        .....+|++||+|.|+++
T Consensus       199 l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~  243 (243)
T PRK07854        199 LNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKFQGA  243 (243)
T ss_pred             HHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCCCCC
Confidence            9864  222222211111111        111269999999999763

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=5.7e-48  Score=357.87  Aligned_cols=239  Identities=29%  Similarity=0.442  Sum_probs=201.0

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccC-CCCch---
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE-NPDTK---   88 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~-~~~~~---   88 (314)
                      .++.+.++.+++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.. .....   
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (257)
T COG1024           3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAEN   82 (257)
T ss_pred             CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHH
Confidence            35678888889999999999999999999999999999999999999999999999999999999999874 11111   


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ........+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iG-----------------------  139 (257)
T COG1024          83 LMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLG-----------------------  139 (257)
T ss_pred             HHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccc-----------------------
Confidence            11111122332  99999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHHHHHHHHHhCCH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~~  245 (314)
                                   +.|++|+++++++++|..+|++++++|+.++|+||+++|||+++++. +++++.+.+++++++. ||
T Consensus       140 -------------l~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~  205 (257)
T COG1024         140 -------------LLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PP  205 (257)
T ss_pred             -------------cCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CH
Confidence                         66666999999999999999999999999999999999999999996 7999999999999988 88


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAK  289 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~  289 (314)
                      . +..+|+.++.......++....+......        ....+|++ |+|.|
T Consensus       206 ~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~~  257 (257)
T COG1024         206 LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPVF  257 (257)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCCC
Confidence            8 99999999887554343333222221111        11269999 99887

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=8.4e-48  Score=365.31  Aligned_cols=243  Identities=20%  Similarity=0.210  Sum_probs=200.6

Q ss_pred             cccEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-------CCccccCCcccccCC
Q psy9494          14 VSSVCTKK--ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-------GNFCSGFDLHELDEN   84 (314)
Q Consensus        14 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-------~~F~aG~Dl~~~~~~   84 (314)
                      ++.|.+++  +++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|       ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            45688888  899999999999999999999999999999999999999999999998       599999999875321


Q ss_pred             C------C--c--hhHH--H--HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEe-CCeEeeccccccccccc
Q psy9494          85 P------D--T--KLFD--D--FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE-ENVLMGFYNRRFVYLKD  147 (314)
Q Consensus        85 ~------~--~--~~~~--~--~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~~~  147 (314)
                      .      .  .  ....  .  ..+....  ++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|    
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~G----  177 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVG----  177 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccc----
Confidence            0      0  0  0000  0  1112221  8999999999999999999999999999999 6899999999999    


Q ss_pred             cccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                                                      +.|+++++++|++++|+.+|++++++|+.++|+||+++|||++++|++
T Consensus       178 --------------------------------l~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~  225 (302)
T PRK08321        178 --------------------------------SFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA  225 (302)
T ss_pred             --------------------------------cCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence                                            666788889999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHH-------hhhHHHHHHhcCCCCCCCC
Q psy9494         228 TAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYI-------GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       228 ~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~af~ekr~p~~~~~  292 (314)
                      ++.+++.+++++|++.||. ++.+|+.++............+.....       ......+|++||+|.|+++
T Consensus       226 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~~  298 (302)
T PRK08321        226 ELETEALEWAREINGKSPTAMRMLKYAFNLTDDGLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSDF  298 (302)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence            9999999999999999999 999999997654332222222211110       0111269999999999886

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-48  Score=357.04  Aligned_cols=228  Identities=17%  Similarity=0.196  Sum_probs=191.3

Q ss_pred             EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh----HHHHHH
Q psy9494          20 KKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL----FDDFRE   95 (314)
Q Consensus        20 ~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~----~~~~~~   95 (314)
                      +++++|++||||||++ |++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........    ...+.+
T Consensus         7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   85 (249)
T PRK07938          7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFA   85 (249)
T ss_pred             ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHH
Confidence            4578999999999985 99999999999999999999999999999999999999999998754221111    111222


Q ss_pred             HHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccc
Q psy9494          96 FLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDN  173 (314)
Q Consensus        96 ~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  173 (314)
                      .+..  ++||||||+|||+|+|||++|+++||+||++++++|++||+++|                              
T Consensus        86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G------------------------------  135 (249)
T PRK07938         86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRG------------------------------  135 (249)
T ss_pred             HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceec------------------------------
Confidence            3332  89999999999999999999999999999999999999999999                              


Q ss_pred             ccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHH
Q psy9494         174 LSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRA  252 (314)
Q Consensus       174 ~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~  252 (314)
                            ++   |++++|++++|+.+|++++++|++++|+||+++||||+++|++++++++.+++++|++.||. ++.+|+
T Consensus       136 ------~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~  206 (249)
T PRK07938        136 ------AL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKE  206 (249)
T ss_pred             ------Cc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                  53   56778999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCC
Q psy9494         253 TVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKK  287 (314)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p  287 (314)
                      .++........+.+..+.......        ...+|+|||+|
T Consensus       207 ~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        207 ALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            998765444333333222211111        11699999987

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-48  Score=357.85  Aligned_cols=213  Identities=23%  Similarity=0.319  Sum_probs=189.4

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---hH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---LF   90 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~   90 (314)
                      ++.+.++++++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.......   ..
T Consensus         2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (249)
T PRK05870          2 MDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGL   81 (249)
T ss_pred             CccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHH
Confidence            456888999999999999999999999999999999999999999999999999999999999999876432211   11


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        82 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G-------------------------  136 (249)
T PRK05870         82 RRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLG-------------------------  136 (249)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccC-------------------------
Confidence            222222222  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 ++|++|+++++++++|+.+|++++++|++++|+||+++||||+++  +++.+++.+++++|+..||. +
T Consensus       137 -----------~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~  203 (249)
T PRK05870        137 -----------LHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELV  203 (249)
T ss_pred             -----------cCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHH
Confidence                       777889999999999999999999999999999999999999999  68999999999999999999 9


Q ss_pred             HHHHHHHHhhhh-chHHH
Q psy9494         248 LADRATVLSECE-TCREE  264 (314)
Q Consensus       248 ~~~K~~~~~~~~-~~~~~  264 (314)
                      +.+|+.++.... ...++
T Consensus       204 ~~~K~~~~~~~~~~~l~~  221 (249)
T PRK05870        204 LATKASMRATASLAQHAA  221 (249)
T ss_pred             HHHHHHHHhccccCCHHH
Confidence            999999987654 44333

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-47  Score=354.16  Aligned_cols=238  Identities=18%  Similarity=0.217  Sum_probs=198.5

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-C-ch---
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-D-TK---   88 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~-~~---   88 (314)
                      .+.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.... + ..   
T Consensus         5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (260)
T PRK07827          5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV   84 (260)
T ss_pred             CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence            346788899999999999999999999999999999999999999999999999999999999999875421 1 11   


Q ss_pred             -hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          89 -LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        89 -~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                       ....+.+.+..  .+||||||+|||+|+|||++++++||+|||+++++|++||+++|                      
T Consensus        85 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------------  142 (260)
T PRK07827         85 ARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIG----------------------  142 (260)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccC----------------------
Confidence             11222233333  89999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|++|+++++++++| .++++++++|++++|+||+++||||++++  ++.+.+.+++++|++.||
T Consensus       143 --------------l~p~~g~~~~l~~l~~-~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~  205 (260)
T PRK07827        143 --------------VAPAIISLTLLPRLSP-RAAARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSP  205 (260)
T ss_pred             --------------CCCCcccchhHHhhhH-HHHHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCH
Confidence                          7778899999998765 68999999999999999999999999974  599999999999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKN  290 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~  290 (314)
                      . ++.+|+.++.............+......        ....+|++||+|.|+
T Consensus       206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~~  259 (260)
T PRK07827        206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRWA  259 (260)
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence            9 99999999877554433332222111111        112699999999985

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=5.3e-47  Score=350.38  Aligned_cols=220  Identities=16%  Similarity=0.195  Sum_probs=195.7

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hH
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LF   90 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~   90 (314)
                      ++++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....... ..
T Consensus         2 ~~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   81 (249)
T PRK07110          2 MMKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTF   81 (249)
T ss_pred             CCCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999875432211 11


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      .. .+.+..  ++||||||+|||+|+|||++|+++||+||++++++|++||.++|                         
T Consensus        82 ~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G-------------------------  135 (249)
T PRK07110         82 TE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYG-------------------------  135 (249)
T ss_pred             hh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccC-------------------------
Confidence            11 122222  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|+.|+++++++++|+.+|++++++|++++|+||+++|||+++++++++.+++.++++++++.||. +
T Consensus       136 -----------l~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  204 (249)
T PRK07110        136 -----------FTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSL  204 (249)
T ss_pred             -----------CCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHH
Confidence                       7778889999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHH
Q psy9494         248 LADRATVLSECETCREEWMSE  268 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~  268 (314)
                      +.+|+.++........+....
T Consensus       205 ~~~K~~l~~~~~~~l~~~~~~  225 (249)
T PRK07110        205 VLLKDHLVADRRRRLPEVIEQ  225 (249)
T ss_pred             HHHHHHHHHhhhccHHHHHHH
Confidence            999999987766554444433

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=3.5e-47  Score=349.37  Aligned_cols=214  Identities=33%  Similarity=0.489  Sum_probs=191.2

Q ss_pred             EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc---hhHHHHH
Q psy9494          18 CTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT---KLFDDFR   94 (314)
Q Consensus        18 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~~~~~   94 (314)
                      +++.+++|++|+||||++.|++|.+++.+|.++++.++.|+++|+||++|.|++||+|.|++++......   .....+.
T Consensus         1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~   80 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQ   80 (245)
T ss_dssp             EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhc
Confidence            4789999999999999999999999999999999999999999999999999999999999988654111   1122233


Q ss_pred             HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccc
Q psy9494          95 EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRD  172 (314)
Q Consensus        95 ~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  172 (314)
                      .++..  .+||||||+|||+|+|||++++++||+|||+++++|++||+++|                             
T Consensus        81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G-----------------------------  131 (245)
T PF00378_consen   81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLG-----------------------------  131 (245)
T ss_dssp             HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGT-----------------------------
T ss_pred             cccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccC-----------------------------
Confidence            33333  99999999999999999999999999999999999999999999                             


Q ss_pred             cccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHH
Q psy9494         173 NLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADR  251 (314)
Q Consensus       173 ~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K  251 (314)
                             ++|++|++++|++++|+.+|++++++|+.++|+||+++||||+++|++++.+.+.+++++++..|+. ++.+|
T Consensus       132 -------~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K  204 (245)
T PF00378_consen  132 -------IFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATK  204 (245)
T ss_dssp             -------SSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             -------cccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence                   7888999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHhhhhchHHHHHH
Q psy9494         252 ATVLSECETCREEWMS  267 (314)
Q Consensus       252 ~~~~~~~~~~~~~~~~  267 (314)
                      +.++........+...
T Consensus       205 ~~~~~~~~~~~~~~~~  220 (245)
T PF00378_consen  205 KALNRALEQSLEEALE  220 (245)
T ss_dssp             HHHHHHHHSHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHH
Confidence            9999876555444433

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.8e-46  Score=347.99  Aligned_cols=236  Identities=16%  Similarity=0.244  Sum_probs=193.0

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch----h
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK----L   89 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----~   89 (314)
                      ++.+.++++++|++|+||||++.|++|.+|+++|.+++++++  +++|+|||||.|++||+|+|++++.......    .
T Consensus         3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK07112          3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLI   80 (255)
T ss_pred             CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhh
Confidence            567899999999999999999999999999999999999998  3699999999999999999999875421111    0


Q ss_pred             -HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          90 -FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        90 -~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                       ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        81 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G-----------------------  137 (255)
T PRK07112         81 DAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFG-----------------------  137 (255)
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhc-----------------------
Confidence             1112233332  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   +.|++ ++.++++++|+.+|++++++|+.++|+||+++||||+++|+++.  .+.+++++|++.||.
T Consensus       138 -------------l~p~~-~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~  201 (255)
T PRK07112        138 -------------LIPAC-VLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKA  201 (255)
T ss_pred             -------------cCcch-hhHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHH
Confidence                         55554 45689999999999999999999999999999999999997553  578899999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCC
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNG  291 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~  291 (314)
                       ++.+|+.++.. .....+....+......        ....+|++||+|.|+.
T Consensus       202 a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~  254 (255)
T PRK07112        202 AVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWEA  254 (255)
T ss_pred             HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCCC
Confidence             99999998764 22233332222111111        1126999999999975

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=1.4e-46  Score=353.18  Aligned_cols=240  Identities=19%  Similarity=0.251  Sum_probs=199.6

Q ss_pred             cccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC--CCccccCCcccccCCCCc-hh
Q psy9494          14 VSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE--GNFCSGFDLHELDENPDT-KL   89 (314)
Q Consensus        14 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g--~~F~aG~Dl~~~~~~~~~-~~   89 (314)
                      .+.|.+++ +++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||||.|  ++||+|.|++++...... ..
T Consensus        10 ~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~   88 (278)
T PLN03214         10 TPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAAR   88 (278)
T ss_pred             CCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHH
Confidence            34688888 6899999999985 6999999999999999999999999999999997  699999999987532111 11


Q ss_pred             HHHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          90 FDDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        90 ~~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                      ...+    ...+..  ++||||||+|||+|+|||++|+++||+||++++++|++||+++|                    
T Consensus        89 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lG--------------------  148 (278)
T PLN03214         89 YAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALG--------------------  148 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhC--------------------
Confidence            1111    122222  89999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccC-CCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         164 TQLKHSLRDNLSRDLAI-PTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~-~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                                      + +|+.++++++++++|+.+|++++++|+.++|+||+++||||+++|.+++.+++.+++++|+.
T Consensus       149 ----------------l~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~  212 (278)
T PLN03214        149 ----------------IPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALK  212 (278)
T ss_pred             ----------------CCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHc
Confidence                            6 47888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCC
Q psy9494         243 LSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKN  290 (314)
Q Consensus       243 ~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~  290 (314)
                      .||. ++.+|+.++.......++.+..+.......+        ..+|+||.+....
T Consensus       213 ~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~  269 (278)
T PLN03214        213 LPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKE  269 (278)
T ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence            9999 9999999987755444433333322111111        2699998766543

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=6.4e-47  Score=364.99  Aligned_cols=241  Identities=21%  Similarity=0.243  Sum_probs=201.7

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC---Cch--
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP---DTK--   88 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~--   88 (314)
                      +.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....   ...  
T Consensus         3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (342)
T PRK05617          3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA   82 (342)
T ss_pred             ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence            3588899999999999999999999999999999999999999999999999999 8999999999874321   111  


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        ........+..  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lG---------------------  141 (342)
T PRK05617         83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIG---------------------  141 (342)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccC---------------------
Confidence              11111222222  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH------------
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGE------------  232 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~------------  232 (314)
                                     ++|++|++++|++++| .+|++++++|+.++|+||+++|||++++|++++.+.            
T Consensus       142 ---------------l~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~  205 (342)
T PRK05617        142 ---------------FFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSG  205 (342)
T ss_pred             ---------------cCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccc
Confidence                           7778999999999877 689999999999999999999999999999888776            


Q ss_pred             --------------------------------------------------HHHHHHHHHhCCHH-HHHHHHHHHhhhhch
Q psy9494         233 --------------------------------------------------AMTRAIQMSKLSQS-MLADRATVLSECETC  261 (314)
Q Consensus       233 --------------------------------------------------a~~~a~~la~~~~~-~~~~K~~~~~~~~~~  261 (314)
                                                                        |.+++++|++.||. ++.+|+.++......
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~  285 (342)
T PRK05617        206 ADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLT  285 (342)
T ss_pred             hhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCC
Confidence                                                              88999999999999 999999998765544


Q ss_pred             HHHHHHHHHHHHhhhH--------HHHHH-hc-CCCCCCCC
Q psy9494         262 REEWMSERKHYIGISF--------ELKFL-QK-KKKAKNGH  292 (314)
Q Consensus       262 ~~~~~~~~~~~~~~~~--------~~af~-ek-r~p~~~~~  292 (314)
                      .++.+..+.......+        ..+|+ +| |.|.|+++
T Consensus       286 l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~~~  326 (342)
T PRK05617        286 LEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWSPA  326 (342)
T ss_pred             HHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCCCC
Confidence            4443332222111111        16896 76 99999887

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.1e-46  Score=341.39  Aligned_cols=208  Identities=26%  Similarity=0.325  Sum_probs=184.6

Q ss_pred             cccEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch
Q psy9494          14 VSSVCTKKI-----LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK   88 (314)
Q Consensus        14 ~~~v~~~~~-----~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   88 (314)
                      +++|.++..     ++|++|+||||++ |++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus         2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~   80 (222)
T PRK05869          2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE   80 (222)
T ss_pred             ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh
Confidence            345555544     8899999999986 9999999999999999999999999999999999999999999875432211


Q ss_pred             h---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          89 L---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        89 ~---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                      .   .+.+.+.+.+  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                    
T Consensus        81 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------  140 (222)
T PRK05869         81 ADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAG--------------------  140 (222)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccC--------------------
Confidence            1   1112233333  89999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      ++|+.|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.
T Consensus       141 ----------------l~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~  204 (222)
T PRK05869        141 ----------------LAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG  204 (222)
T ss_pred             ----------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence                            7778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHhhh
Q psy9494         244 SQS-MLADRATVLSEC  258 (314)
Q Consensus       244 ~~~-~~~~K~~~~~~~  258 (314)
                      ||. ++.+|+.++...
T Consensus       205 ~~~a~~~~K~~~~~~~  220 (222)
T PRK05869        205 PPHALAAAKAGISDVY  220 (222)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            999 999999988654

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=9.9e-46  Score=361.11  Aligned_cols=242  Identities=18%  Similarity=0.218  Sum_probs=199.6

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--CchhHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--DTKLFD   91 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~~~   91 (314)
                      ...|.++++++|++||||||+++|++|.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++....  ......
T Consensus        10 ~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   89 (379)
T PLN02874         10 EEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLE   89 (379)
T ss_pred             CCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHH
Confidence            456888889999999999999999999999999999999999999999999999999999999999874321  111111


Q ss_pred             HHH---HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          92 DFR---EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        92 ~~~---~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      .+.   .....  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        90 ~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iG-----------------------  146 (379)
T PLN02874         90 VVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVG-----------------------  146 (379)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccC-----------------------
Confidence            111   11222  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH---H-----------
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVG---E-----------  232 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~---~-----------  232 (314)
                                   +.|+.|++++|++++|. ++++|++||++++|+||+++|||+++||++++.+   +           
T Consensus       147 -------------l~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~  212 (379)
T PLN02874        147 -------------FHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESA  212 (379)
T ss_pred             -------------cCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHH
Confidence                         67788999999999995 8999999999999999999999999999887765   2           


Q ss_pred             -----------------------------------------------------HHHHHHHHHhCCHH-HHHHHHHHHhhh
Q psy9494         233 -----------------------------------------------------AMTRAIQMSKLSQS-MLADRATVLSEC  258 (314)
Q Consensus       233 -----------------------------------------------------a~~~a~~la~~~~~-~~~~K~~~~~~~  258 (314)
                                                                           |.+++++|++.+|. ++.+|+.++...
T Consensus       213 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~  292 (379)
T PLN02874        213 VQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGR  292 (379)
T ss_pred             HHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhc
Confidence                                                                 34789999999999 999999998765


Q ss_pred             hchHHHHHHHH-HHHHhh-------hH---HHHHH-hc-CCCCCCCC
Q psy9494         259 ETCREEWMSER-KHYIGI-------SF---ELKFL-QK-KKKAKNGH  292 (314)
Q Consensus       259 ~~~~~~~~~~~-~~~~~~-------~~---~~af~-ek-r~p~~~~~  292 (314)
                      .....+.+..+ ......       .+   ..||+ +| |+|.|+++
T Consensus       293 ~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~~~  339 (379)
T PLN02874        293 KQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPS  339 (379)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCCCCC
Confidence            54444333322 111101       11   16997 78 99999986

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.1e-45  Score=343.19  Aligned_cols=210  Identities=24%  Similarity=0.311  Sum_probs=184.7

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC------
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD------   86 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~------   86 (314)
                      .++.|.++++++|++||||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.....      
T Consensus         2 ~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~   81 (288)
T PRK08290          2 EYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPD   81 (288)
T ss_pred             CCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccc
Confidence            35668899999999999999999999999999999999999999999999999999999999999998632110      


Q ss_pred             ------------c--h--hH---HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccc
Q psy9494          87 ------------T--K--LF---DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYL  145 (314)
Q Consensus        87 ------------~--~--~~---~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~  145 (314)
                                  .  .  ..   ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lG--  159 (288)
T PRK08290         82 QHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG--  159 (288)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccC--
Confidence                        0  0  00   111222222  89999999999999999999999999999999999999999999  


Q ss_pred             cccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494         146 KDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVN  225 (314)
Q Consensus       146 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~  225 (314)
                                                        ++ + .+++++++++|+.+|++++++|+.++|+||+++||||++++
T Consensus       160 ----------------------------------l~-~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~  203 (288)
T PRK08290        160 ----------------------------------IP-G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVP  203 (288)
T ss_pred             ----------------------------------cC-c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeC
Confidence                                              65 2 45677899999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhc
Q psy9494         226 CGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECET  260 (314)
Q Consensus       226 ~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~  260 (314)
                      ++++.+++.+++++|++.|+. ++.+|+.++...+.
T Consensus       204 ~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~  239 (288)
T PRK08290        204 RDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDA  239 (288)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999 99999999876543

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.1e-45  Score=345.45  Aligned_cols=209  Identities=24%  Similarity=0.378  Sum_probs=183.0

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc----
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT----   87 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~----   87 (314)
                      +.++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++......    
T Consensus         7 ~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~   86 (302)
T PRK08272          7 DNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG   86 (302)
T ss_pred             CCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence            4567799999999999999999999999999999999999999999999999999999999999999987432110    


Q ss_pred             ------------------h------hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccc
Q psy9494          88 ------------------K------LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR  141 (314)
Q Consensus        88 ------------------~------~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~  141 (314)
                                        .      ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~  166 (302)
T PRK08272         87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTR  166 (302)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchh
Confidence                              0      01111222222  899999999999999999999999999999999999999999


Q ss_pred             cccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCce
Q psy9494         142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCN  221 (314)
Q Consensus       142 ~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~  221 (314)
                      +|.                                   +||    ..++++++|+.+|++++++|++++|+||+++||||
T Consensus       167 ~gg-----------------------------------~~~----~~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~  207 (302)
T PRK08272        167 VWG-----------------------------------VPA----TGMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAV  207 (302)
T ss_pred             ccc-----------------------------------CCh----HHHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCc
Confidence            751                                   553    23578899999999999999999999999999999


Q ss_pred             eeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhh
Q psy9494         222 KMVNCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECE  259 (314)
Q Consensus       222 ~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~  259 (314)
                      +++|++++.+++.++|++|+..||. ++.+|+.++...+
T Consensus       208 ~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~  246 (302)
T PRK08272        208 EAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSALL  246 (302)
T ss_pred             eecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 9999999987654

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.1e-44  Score=365.39  Aligned_cols=240  Identities=13%  Similarity=0.096  Sum_probs=198.1

Q ss_pred             EEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhh-CCCccEEEEEcCC-CCccccCCccccc
Q psy9494          18 CTKKILNITLISLNRPDKI-------------NAINLKTLDALQENIKRFED-DTESPLAILYGQE-GNFCSGFDLHELD   82 (314)
Q Consensus        18 ~~~~~~~v~~itlnrp~~~-------------Nal~~~~~~eL~~al~~~~~-d~~vr~vVltg~g-~~F~aG~Dl~~~~   82 (314)
                      .++++++|++||||||+++             |++|.+|+.+|.+++++++. |+++|+|||||.| ++||+|+|++...
T Consensus       265 ~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~  344 (550)
T PRK08184        265 EIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLA  344 (550)
T ss_pred             EEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhc
Confidence            3455689999999999988             68999999999999999996 7999999999999 4999999987332


Q ss_pred             CCCC---chhHHHHHHHHhc--CCCCcEEEEEc-Ccccccc-ccccccCcEEEEe-------CCeEeecccccccccccc
Q psy9494          83 ENPD---TKLFDDFREFLQK--PAKKPIIAAIT-GYAVGQG-LDLALWCDLRFVE-------ENVLMGFYNRRFVYLKDS  148 (314)
Q Consensus        83 ~~~~---~~~~~~~~~~~~~--~~~kPvIAav~-G~a~GgG-~~lalacD~~ia~-------~~a~f~~pe~~~G~~~~~  148 (314)
                      ....   ......+...+.+  ++||||||+|| |+|+||| ++|+++||+|||+       ++++|++||+++|     
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~G-----  419 (550)
T PRK08184        345 HKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFG-----  419 (550)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECcccccc-----
Confidence            1111   0111112222322  89999999997 9999999 9999999999999       9999999999999     


Q ss_pred             ccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH-hhHHHHHHH--HhcCCCCCHHHHHHCCCceeeeC
Q psy9494         149 LLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM-IGTSRTMDM--ISLGRHITAREALDWGLCNKMVN  225 (314)
Q Consensus       149 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~-vG~~~a~~l--ll~G~~~sA~eA~~~GLV~~vv~  225 (314)
                                                     +.|++|++++|+++ +|..+|+++  +++|++++|+||+++||||+++|
T Consensus       420 -------------------------------l~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~  468 (550)
T PRK08184        420 -------------------------------LYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPD  468 (550)
T ss_pred             -------------------------------CCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccC
Confidence                                           77789999999998 699999997  58999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHH-HHHHHHHHhhh-----------HHHHHHhcCCCCCCCC
Q psy9494         226 CGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEW-MSERKHYIGIS-----------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       226 ~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~af~ekr~p~~~~~  292 (314)
                      ++++.+++.+++++|++.||. ++.+|+.++.......++. +..+...+...           ...+|+|||+|+|++.
T Consensus       469 ~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~~  548 (550)
T PRK08184        469 DIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFDWN  548 (550)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCCCC
Confidence            999999999999999999999 9999999988766554443 22222211111           1369999999999986


Q ss_pred             c
Q psy9494         293 L  293 (314)
Q Consensus       293 ~  293 (314)
                      .
T Consensus       549 ~  549 (550)
T PRK08184        549 R  549 (550)
T ss_pred             C
Confidence            3

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=3.1e-44  Score=363.41  Aligned_cols=240  Identities=15%  Similarity=0.099  Sum_probs=198.6

Q ss_pred             EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-hCCCccEEEEEcCCCC-ccccCCcccc
Q psy9494          17 VCTKKILNITLISLNRPDKI-------------NAINLKTLDALQENIKRFE-DDTESPLAILYGQEGN-FCSGFDLHEL   81 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~-------------Nal~~~~~~eL~~al~~~~-~d~~vr~vVltg~g~~-F~aG~Dl~~~   81 (314)
                      +.++++++|++||||||++.             |++|.+|+.+|.+++++++ +|++||+|||||.|+. ||+|+|++..
T Consensus       260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~  339 (546)
T TIGR03222       260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE  339 (546)
T ss_pred             EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence            44566899999999999999             9999999999999999998 4599999999999987 9999999843


Q ss_pred             cCCCCchhH---HHHHHHHhc--CCCCcEEEEE-cCcccccc-ccccccCcEEEE-------eCCeEeeccccccccccc
Q psy9494          82 DENPDTKLF---DDFREFLQK--PAKKPIIAAI-TGYAVGQG-LDLALWCDLRFV-------EENVLMGFYNRRFVYLKD  147 (314)
Q Consensus        82 ~~~~~~~~~---~~~~~~~~~--~~~kPvIAav-~G~a~GgG-~~lalacD~~ia-------~~~a~f~~pe~~~G~~~~  147 (314)
                      .........   ......+..  .++|||||+| ||+|+||| ++|+++||++||       +++++|++||.++|    
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG----  415 (546)
T TIGR03222       340 AHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG----  415 (546)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc----
Confidence            211110101   111222222  8999999999 89999999 999999999999       89999999999999    


Q ss_pred             cccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHh-hHHHH--HHHHhcCCCCCHHHHHHCCCceeee
Q psy9494         148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI-GTSRT--MDMISLGRHITAREALDWGLCNKMV  224 (314)
Q Consensus       148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~v-G~~~a--~~lll~G~~~sA~eA~~~GLV~~vv  224 (314)
                                                      +.|++|++++|++++ |..++  ++++++|+.++|+||+++|||++++
T Consensus       416 --------------------------------l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv  463 (546)
T TIGR03222       416 --------------------------------LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAP  463 (546)
T ss_pred             --------------------------------cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCccccc
Confidence                                            777899999999998 99888  5699999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHH-HHHHHHHHhhh-----------HHHHHHhcCCCCCCC
Q psy9494         225 NCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEW-MSERKHYIGIS-----------FELKFLQKKKKAKNG  291 (314)
Q Consensus       225 ~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~af~ekr~p~~~~  291 (314)
                      +++++.+++.+++++|++.||. ++.+|+.++.......+.. +..+...+...           ...+|+|||+|+|+-
T Consensus       464 ~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~  543 (546)
T TIGR03222       464 DDIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFDM  543 (546)
T ss_pred             CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCCc
Confidence            9999999999999999999999 9999999987765544433 22221111111           236999999999975


Q ss_pred             C
Q psy9494         292 H  292 (314)
Q Consensus       292 ~  292 (314)
                      .
T Consensus       544 ~  544 (546)
T TIGR03222       544 E  544 (546)
T ss_pred             c
Confidence            3

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=3.8e-44  Score=351.38  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=182.1

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C-ch-h
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D-TK-L   89 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~-~   89 (314)
                      ...|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++....  . .. .
T Consensus        36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            345888999999999999999999999999999999999999999999999999999999999999875321  1 11 1


Q ss_pred             HHHH---HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 FDDF---REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ~~~~---~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                      ...+   ......  ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus       116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iG---------------------  174 (401)
T PLN02157        116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIG---------------------  174 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcC---------------------
Confidence            1111   111111  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|+.|++++|++++|. ++++|++||+.++|+||+++|||++++|.+++ +++.+++++++..+
T Consensus       175 ---------------l~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~  237 (401)
T PLN02157        175 ---------------FHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD  237 (401)
T ss_pred             ---------------CCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC
Confidence                           77789999999999996 89999999999999999999999999999987 67889999999999


Q ss_pred             HH-HHHHHHHHHhh
Q psy9494         245 QS-MLADRATVLSE  257 (314)
Q Consensus       245 ~~-~~~~K~~~~~~  257 (314)
                      |. +..+|+.++..
T Consensus       238 p~av~~~k~~~~~~  251 (401)
T PLN02157        238 PSVVESCLEKCAEV  251 (401)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99 99999988754

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=7.6e-44  Score=336.12  Aligned_cols=210  Identities=21%  Similarity=0.179  Sum_probs=177.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhh-----CCCccEEEEEcC-CCCccccCCcccccCC---CCc
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFED-----DTESPLAILYGQ-EGNFCSGFDLHELDEN---PDT   87 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~-----d~~vr~vVltg~-g~~F~aG~Dl~~~~~~---~~~   87 (314)
                      |.++.+++|++|+|| |++.|+||.+|+.+|.++++++++     |+++|+|||||. |++||+|.|++++...   ...
T Consensus        19 i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~   97 (287)
T PRK08788         19 VYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDR   97 (287)
T ss_pred             EEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccch
Confidence            566678999999996 999999999999999999999998     899999999999 7999999999987431   111


Q ss_pred             h-h---HHHHHHHHh----c-CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494          88 K-L---FDDFREFLQ----K-PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA  158 (314)
Q Consensus        88 ~-~---~~~~~~~~~----~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~  158 (314)
                      . .   ...+...+.    . .+||||||+|||+|+|||++|+++||+||++++++|++||+++|               
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lG---------------  162 (287)
T PRK08788         98 DALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFN---------------  162 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhC---------------
Confidence            1 0   011111111    1 69999999999999999999999999999999999999999999               


Q ss_pred             cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                           ++|++|+++++++++|+.+|++++++|+.++|+||++|||||+++|++++.+++.++++
T Consensus       163 ---------------------l~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~  221 (287)
T PRK08788        163 ---------------------LFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIR  221 (287)
T ss_pred             ---------------------cCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHH
Confidence                                 77788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHH-HHHHHHHHHhhhhchHHH
Q psy9494         239 QMSKLSQS-MLADRATVLSECETCREE  264 (314)
Q Consensus       239 ~la~~~~~-~~~~K~~~~~~~~~~~~~  264 (314)
                      +|+.. |. ...+|+..+...+...++
T Consensus       222 ~ia~~-~~~~~a~k~~~~~~~~~~~~~  247 (287)
T PRK08788        222 KSKRK-LNGWRAMLRARRRVNPLSLEE  247 (287)
T ss_pred             HHhcC-ccHHHHHHHHHHhhccCCHHH
Confidence            99987 44 555555554433333333

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-43  Score=324.29  Aligned_cols=211  Identities=20%  Similarity=0.261  Sum_probs=183.6

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc--hhHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT--KLFD   91 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~   91 (314)
                      .+.|.++++++|++||||||+ .|++|.+|+++|.+++++++  +++|+||++|.|++||+|.|++++......  ....
T Consensus         2 ~~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~   78 (229)
T PRK06213          2 SELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLT   78 (229)
T ss_pred             cceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHH
Confidence            346888999999999999984 69999999999999999998  457999999999999999999987542111  1112


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC-eEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      ...+.+.+  ++||||||+|||+|+|||++++++||+|||+++ ++|++||+++|                         
T Consensus        79 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~G-------------------------  133 (229)
T PRK06213         79 AGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIG-------------------------  133 (229)
T ss_pred             HHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhC-------------------------
Confidence            22233333  899999999999999999999999999999999 99999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 ++|..+++.++++++|+.++++++++|++++|+||+++||||+++|++++.+++.++++++++.||. +
T Consensus       134 -----------l~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  202 (229)
T PRK06213        134 -----------MTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAH  202 (229)
T ss_pred             -----------CcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHH
Confidence                       5555677888999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHH
Q psy9494         248 LADRATVLSECETCRE  263 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~  263 (314)
                      +.+|+.++........
T Consensus       203 ~~~K~~l~~~~~~~l~  218 (229)
T PRK06213        203 AATKLKVRAAALEAIR  218 (229)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999876544433

>KOG1679|consensus

Probab=100.00  E-value=1.4e-43  Score=315.25  Aligned_cols=239  Identities=26%  Similarity=0.394  Sum_probs=205.7

Q ss_pred             ccEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCCch-
Q psy9494          15 SSVCTKK----ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPDTK-   88 (314)
Q Consensus        15 ~~v~~~~----~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~-   88 (314)
                      +.|.+++    +.||..|-||||.+.|+|+..|+++|.++++++..|+.+|+|+|++. ++.||+|+||++-..++..+ 
T Consensus        27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev  106 (291)
T KOG1679|consen   27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV  106 (291)
T ss_pred             ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence            3455554    56899999999999999999999999999999999999999999976 68999999999988776544 


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        +...++..+..  ++|.||||+|+|.|+|||+++|++||+|+|+.+++||++|++++                     
T Consensus       107 ~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~la---------------------  165 (291)
T KOG1679|consen  107 TRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLA---------------------  165 (291)
T ss_pred             HHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhcccccccccee---------------------
Confidence              23334444443  99999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC----chHHHHHHHHHHH
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCG----TAVGEAMTRAIQM  240 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~----~l~~~a~~~a~~l  240 (314)
                                     +.|+.|+++||+|.+|.+.|+++++||+.+++.||...||||++|..+    ...+.+.++|++|
T Consensus       166 ---------------iiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~ei  230 (291)
T KOG1679|consen  166 ---------------IIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREI  230 (291)
T ss_pred             ---------------eecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHh
Confidence                           677999999999999999999999999999999999999999999864    6778899999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHH-HHHHHH----------HHhhhHHHHHHhcCCCCCCCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEW-MSERKH----------YIGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~af~ekr~p~~~~~  292 (314)
                      ....|. ++.+|..++...+...... ..|+..          .+++   .+|.|||+|.|+|.
T Consensus       231 lp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLegl---aaf~ekr~p~y~G~  291 (291)
T KOG1679|consen  231 LPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGL---AAFKEKRKPEYKGE  291 (291)
T ss_pred             ccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHH---HHHHhhcCCCcCCC
Confidence            999999 9999999998776543332 222222          2222   59999999999984

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1e-41  Score=356.08  Aligned_cols=192  Identities=21%  Similarity=0.283  Sum_probs=172.0

Q ss_pred             cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--Cch----
Q psy9494          16 SVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--DTK----   88 (314)
Q Consensus        16 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~----   88 (314)
                      .+.++. +++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....  ...    
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   86 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQ   86 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHH
Confidence            567774 7899999999999999999999999999999999999999999999999999999999875321  111    


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ......+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        87 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lG-----------------------  143 (715)
T PRK11730         87 WLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLG-----------------------  143 (715)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcC-----------------------
Confidence            11112222222  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                   +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..
T Consensus       144 -------------l~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~  207 (715)
T PRK11730        144 -------------IMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAG  207 (715)
T ss_pred             -------------CCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhc
Confidence                         7778999999999999999999999999999999999999999999999999999999999865

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=8.2e-42  Score=314.34  Aligned_cols=204  Identities=19%  Similarity=0.276  Sum_probs=173.9

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCcc-EEEEEcCCCCccccCCcccccCCCC-chh----H
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESP-LAILYGQEGNFCSGFDLHELDENPD-TKL----F   90 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~----~   90 (314)
                      +.++++++|++|+||||++ |++|.+|+++|.++++++++|++++ +||++|.|++||+|+|++++..... ...    .
T Consensus         2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   80 (239)
T PLN02267          2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV   80 (239)
T ss_pred             ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence            4677889999999999986 9999999999999999999999875 7778899999999999998643211 111    1


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEe-CCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE-ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+ ++++|++||.++|                        
T Consensus        81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~G------------------------  136 (239)
T PLN02267         81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIG------------------------  136 (239)
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccC------------------------
Confidence            112223332  8999999999999999999999999999998 5679999999999                        


Q ss_pred             ccccccccccccCC-CCchHHHHHHHHhhHHHH-HHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHHHHHHHHHhCC
Q psy9494         168 HSLRDNLSRDLAIP-TCDVTIRRLGQMIGTSRT-MDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       168 ~~~~~~~~~~~~~~-p~~g~~~~l~~~vG~~~a-~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~  244 (314)
                                  ++ |++ ++.++++++|..++ ++++++|++++|+||+++||||+++++ +++.+++.++|++|++.+
T Consensus       137 ------------l~~p~~-~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~  203 (239)
T PLN02267        137 ------------LPLPDY-FMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARK  203 (239)
T ss_pred             ------------CCCChH-HHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhcc
Confidence                        54 544 57899999999999 699999999999999999999999985 689999999999999874


Q ss_pred             H--H-HHHHHHHHHhhh
Q psy9494         245 Q--S-MLADRATVLSEC  258 (314)
Q Consensus       245 ~--~-~~~~K~~~~~~~  258 (314)
                      +  . +..+|+.++.+.
T Consensus       204 ~~~~~~~~~k~~~~~~~  220 (239)
T PLN02267        204 WNGEVYASIRKSLLPEV  220 (239)
T ss_pred             CcccHHHHHHHHHHHHH
Confidence            4  4 999999988765

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=4.5e-41  Score=328.16  Aligned_cols=203  Identities=18%  Similarity=0.249  Sum_probs=176.4

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-Cch--hHH
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-DTK--LFD   91 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~--~~~   91 (314)
                      ..|.++++++|++||||||++.|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++.... ...  ...
T Consensus         9 ~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~   88 (381)
T PLN02988          9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGA   88 (381)
T ss_pred             CceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHH
Confidence            36888889999999999999999999999999999999999999999999999999999999999875321 111  011


Q ss_pred             H-HH---HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          92 D-FR---EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        92 ~-~~---~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                      . +.   .....  ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|                      
T Consensus        89 ~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iG----------------------  146 (381)
T PLN02988         89 NFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALG----------------------  146 (381)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcC----------------------
Confidence            1 11   11111  89999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|+.|++++|++++|. .+++|++||++++|+||+++|||+++++.+++.+.+.+++ +++..+|
T Consensus       147 --------------l~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p  210 (381)
T PLN02988        147 --------------LFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDP  210 (381)
T ss_pred             --------------cCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCH
Confidence                          77789999999999997 6899999999999999999999999999999999888888 7777777


Q ss_pred             H-HHHHHHHHH
Q psy9494         246 S-MLADRATVL  255 (314)
Q Consensus       246 ~-~~~~K~~~~  255 (314)
                      . +..+|+.+.
T Consensus       211 ~~~~~~~~~~~  221 (381)
T PLN02988        211 TFASTILDAYT  221 (381)
T ss_pred             HHHHHHHHHhh
Confidence            7 777776554

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=4e-40  Score=343.93  Aligned_cols=190  Identities=24%  Similarity=0.414  Sum_probs=167.6

Q ss_pred             cccEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchhH
Q psy9494          14 VSSVCTKK-ILNITLISLNRP-DKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKLF   90 (314)
Q Consensus        14 ~~~v~~~~-~~~v~~itlnrp-~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   90 (314)
                      .+.+.+++ +++|++|||||| ++.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++.........
T Consensus         4 ~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~   83 (708)
T PRK11154          4 ASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEA   83 (708)
T ss_pred             CceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHH
Confidence            34567777 789999999999 689999999999999999999999999999999874 899999999987542211111


Q ss_pred             ----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCe--Eeeccccccccccccccccchhhhhcccc
Q psy9494          91 ----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV--LMGFYNRRFVYLKDSLLSSGVVLYALHVP  162 (314)
Q Consensus        91 ----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a--~f~~pe~~~G~~~~~~~~~g~~~~~~~~~  162 (314)
                          ....+.+..  ++||||||+|||+|+|||++|+++||+|||++++  +|++||+++|                   
T Consensus        84 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lG-------------------  144 (708)
T PRK11154         84 EALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLG-------------------  144 (708)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCC-------------------
Confidence                112223333  8999999999999999999999999999999974  8999999999                   


Q ss_pred             cccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494         163 RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ  239 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~  239 (314)
                                       +.|++|++++|++++|..+|++|+++|++++|+||+++||||++++++++.++|.++|++
T Consensus       145 -----------------l~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~  204 (708)
T PRK11154        145 -----------------LLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK  204 (708)
T ss_pred             -----------------CCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHh
Confidence                             777899999999999999999999999999999999999999999999999999999988

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=2.1e-40  Score=318.56  Aligned_cols=196  Identities=16%  Similarity=0.216  Sum_probs=171.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC--Cc-hh---HHHHHHHH
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP--DT-KL---FDDFREFL   97 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~-~~---~~~~~~~~   97 (314)
                      +++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....  .. ..   ...+.+.+
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            566999999999999999999999999999999999999999999 6999999999875421  11 11   11122223


Q ss_pred             hc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494          98 QK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS  175 (314)
Q Consensus        98 ~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ..  .++|||||+|||+|+|||++|+++||+|||+++++|++||+++|                                
T Consensus       118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlG--------------------------------  165 (360)
T TIGR03200       118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHG--------------------------------  165 (360)
T ss_pred             HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccC--------------------------------
Confidence            22  89999999999999999999999999999999999999999999                                


Q ss_pred             ccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCch------------HHHHHHHHHHHHhC
Q psy9494         176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTA------------VGEAMTRAIQMSKL  243 (314)
Q Consensus       176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l------------~~~a~~~a~~la~~  243 (314)
                          +.|++|++++|++++|..+|++++++|++++|+||+++|||++++|++++            ++.+.++++.+...
T Consensus       166 ----l~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  241 (360)
T TIGR03200       166 ----SAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE  241 (360)
T ss_pred             ----CCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence                78889999999999999999999999999999999999999999999888            78888889888877


Q ss_pred             CHH---HHHHHHHHHh
Q psy9494         244 SQS---MLADRATVLS  256 (314)
Q Consensus       244 ~~~---~~~~K~~~~~  256 (314)
                      ++.   +.+.|.++..
T Consensus       242 ~~~~~~~~~~k~~~~~  257 (360)
T TIGR03200       242 FKAGDELKAGKELIKQ  257 (360)
T ss_pred             CcchhHHHHHHHHHhc
Confidence            665   7778877665

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG1681|consensus

Probab=100.00  E-value=4.7e-41  Score=301.38  Aligned_cols=213  Identities=24%  Similarity=0.379  Sum_probs=185.4

Q ss_pred             cccEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC-----
Q psy9494          14 VSSVCTKK---ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP-----   85 (314)
Q Consensus        14 ~~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-----   85 (314)
                      ++++.+.+   ++-|.++.||||.|.|++|..|+.|+.++++.+.+||++|+|||+|+|++||+|+|++.+....     
T Consensus        18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~   97 (292)
T KOG1681|consen   18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE   97 (292)
T ss_pred             cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence            45444442   4569999999999999999999999999999999999999999999999999999988764321     


Q ss_pred             Cch------hHHHHHHHHhc------CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccc
Q psy9494          86 DTK------LFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSG  153 (314)
Q Consensus        86 ~~~------~~~~~~~~~~~------~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g  153 (314)
                      ..+      ....+...++.      +||||||++|+|+|+|+|+.|..+||+|+|+++|.|+.-|+.+|          
T Consensus        98 ~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvg----------  167 (292)
T KOG1681|consen   98 GDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVG----------  167 (292)
T ss_pred             cchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeee----------
Confidence            111      11122222222      99999999999999999999999999999999999999999999          


Q ss_pred             hhhhhcccccccccccccccccccccCCCCchHHHHHHHHhh-HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHH
Q psy9494         154 VVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG-TSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVG  231 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG-~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~  231 (314)
                                                +..+-|...|||+.+| .+.++++.+|+++|+|.||++.|||++|+|+ ++++.
T Consensus       168 --------------------------laADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~  221 (292)
T KOG1681|consen  168 --------------------------LAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLN  221 (292)
T ss_pred             --------------------------hhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHh
Confidence                                      7778899999999999 8999999999999999999999999999997 78999


Q ss_pred             HHHHHHHHHHhCCHH-HHHHHHHHHhhhhchH
Q psy9494         232 EAMTRAIQMSKLSQS-MLADRATVLSECETCR  262 (314)
Q Consensus       232 ~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~  262 (314)
                      .+..+|+.|+.++|. ++.+|..++...+...
T Consensus       222 ~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv  253 (292)
T KOG1681|consen  222 GALPMAELIASKSPVAVQGTKENLLYSREHSV  253 (292)
T ss_pred             hhHHHHHHhccCCceeeechHHHHHHHhhhhh
Confidence            999999999999999 9999998876655443

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=2.2e-40  Score=295.21  Aligned_cols=240  Identities=26%  Similarity=0.370  Sum_probs=200.8

Q ss_pred             hccccEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--C-CCccccCCcccccCC---
Q psy9494          12 RLVSSVCTKKI-LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--E-GNFCSGFDLHELDEN---   84 (314)
Q Consensus        12 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--g-~~F~aG~Dl~~~~~~---   84 (314)
                      ..++.|.+++. ++|+.||+|||+++|++.+.++.|+.++|..+..|++|.+|||||+  | .+||+|.|-+--...   
T Consensus        15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY   94 (282)
T COG0447          15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY   94 (282)
T ss_pred             CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence            35788999997 9999999999999999999999999999999999999999999985  4 799999998654331   


Q ss_pred             CCchh-----HHHHHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhc
Q psy9494          85 PDTKL-----FDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYAL  159 (314)
Q Consensus        85 ~~~~~-----~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~  159 (314)
                      .+.+.     .-++.++++ .+||||||.|+|+|+|||-.|-+.||+.||+++|+|+..-.++|                
T Consensus        95 ~~d~~~~rLnvLdlQrlIR-~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VG----------------  157 (282)
T COG0447          95 VDDDGIPRLNVLDLQRLIR-TMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVG----------------  157 (282)
T ss_pred             cCCccCcccchhhHHHHHH-hCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcc----------------
Confidence            11111     112333333 99999999999999999999999999999999999999999999                


Q ss_pred             ccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494         160 HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~  239 (314)
                                          -.-++.++..|.|+||..+|+|+.+.+|.++|+||+++|+||.|||.++|.+++.+|+++
T Consensus       158 --------------------SFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E  217 (282)
T COG0447         158 --------------------SFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWARE  217 (282)
T ss_pred             --------------------cccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHH
Confidence                                222344566799999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHH-HHHHHHHHHhhhhch--HHHHHHH--------HHHHHhhhHHHHHHhcCCCCCCC
Q psy9494         240 MSKLSQS-MLADRATVLSECETC--REEWMSE--------RKHYIGISFELKFLQKKKKAKNG  291 (314)
Q Consensus       240 la~~~~~-~~~~K~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~af~ekr~p~~~~  291 (314)
                      |.++||. +++.|..++..++..  .+++.-+        ++..++   ..||+|||+|.|..
T Consensus       218 ~l~kSP~AlR~LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EG---r~AF~eKR~Pdf~~  277 (282)
T COG0447         218 MLAKSPTALRMLKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEG---RDAFLEKRKPDFSK  277 (282)
T ss_pred             HHhcChHHHHHHHHHhcCCCchhhHHHHhcccceEEEEechhhhhh---HHHHhhccCCChHh
Confidence            9999999 999999999887653  2332111        122222   35999999999864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=3.9e-39  Score=335.99  Aligned_cols=183  Identities=25%  Similarity=0.426  Sum_probs=162.4

Q ss_pred             EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEE-EcCCCCccccCCcccccCCCCchhH----HHH
Q psy9494          20 KKILNITLISLNRP-DKINAINLKTLDALQENIKRFEDDTESPLAIL-YGQEGNFCSGFDLHELDENPDTKLF----DDF   93 (314)
Q Consensus        20 ~~~~~v~~itlnrp-~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~----~~~   93 (314)
                      +.+++|++|||||| ++.|++|.+|+.+|.+++++++.|+++|+||| +|.|++||+|+|++++.........    ...
T Consensus         6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   85 (699)
T TIGR02440         6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQG   85 (699)
T ss_pred             EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHH
Confidence            45789999999999 69999999999999999999999999999986 6788999999999987542211111    112


Q ss_pred             HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          94 REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        94 ~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .+.+..  ++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|                          
T Consensus        86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lG--------------------------  139 (699)
T TIGR02440        86 QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLG--------------------------  139 (699)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhccc--------------------------
Confidence            222222  899999999999999999999999999999986  79999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                +.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|+++++++|.++|+
T Consensus       140 ----------l~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~  198 (699)
T TIGR02440       140 ----------LLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMAL  198 (699)
T ss_pred             ----------CCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHH
Confidence                      77789999999999999999999999999999999999999999999999999999998

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=6.1e-39  Score=314.89  Aligned_cols=193  Identities=17%  Similarity=0.218  Sum_probs=165.8

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC---chh
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD---TKL   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~   89 (314)
                      ..+.|.++.++++++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.....   ...
T Consensus        40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~  119 (407)
T PLN02851         40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE  119 (407)
T ss_pred             CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999998754211   111


Q ss_pred             HHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          90 FDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        90 ~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                      ...    ..++...  ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|                    
T Consensus       120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iG--------------------  179 (407)
T PLN02851        120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMG--------------------  179 (407)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccC--------------------
Confidence            111    1122212  89999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|+.|++++|++++|.. ++++++||++++|+||+++||+++++|.+++ +.+.+.+.++...
T Consensus       180 ----------------l~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~  241 (407)
T PLN02851        180 ----------------FHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTD  241 (407)
T ss_pred             ----------------CCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccC
Confidence                            677899999999999974 9999999999999999999999999999876 5555555555433

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=9.1e-39  Score=282.27  Aligned_cols=188  Identities=32%  Similarity=0.558  Sum_probs=169.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-----hHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-----LFD   91 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-----~~~   91 (314)
                      +.++++++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||.|+.||+|.|++++.......     ...
T Consensus         1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~   80 (195)
T cd06558           1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR   80 (195)
T ss_pred             CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence            457888999999999999999999999999999999999999999999999999999999999987654321     222


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .+...+..  .++|||||+|||+|.|+|++++++||+||++++++|++||.++|                          
T Consensus        81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G--------------------------  134 (195)
T cd06558          81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLG--------------------------  134 (195)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcC--------------------------
Confidence            22333333  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                ++|+.|+++++++++|..++++++++|+.++|+||+++|||+++++.+++.+++.++++++
T Consensus       135 ----------~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~~  195 (195)
T cd06558         135 ----------LVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL  195 (195)
T ss_pred             ----------CCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhhC
Confidence                      6778899999999999999999999999999999999999999999999999999988763

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG0016|consensus

Probab=100.00  E-value=2.2e-38  Score=288.87  Aligned_cols=219  Identities=23%  Similarity=0.332  Sum_probs=194.6

Q ss_pred             hccccEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh-
Q psy9494          12 RLVSSVCTKKILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL-   89 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itln-rp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-   89 (314)
                      +.++.+.+++++++.+|.+| ||+|.|+++.+++.+++++|+.+.+|+++..++++|.|++||+|.|+..+....+++. 
T Consensus         4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~   83 (266)
T KOG0016|consen    4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN   83 (266)
T ss_pred             ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence            45678899999999999999 9999999999999999999999999999999999999999999999998765433221 


Q ss_pred             --HHHH-------HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494          90 --FDDF-------REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA  158 (314)
Q Consensus        90 --~~~~-------~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~  158 (314)
                        ....       ..++..  .+|||+||+|||+|+|.|..+...||+++|+++++|.+|+.++|               
T Consensus        84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lG---------------  148 (266)
T KOG0016|consen   84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLG---------------  148 (266)
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcC---------------
Confidence              1111       112222  99999999999999999999999999999999999999999999               


Q ss_pred             cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                           +.|++++++.+|+++|...|.||++.|++++|+||.+.|||+++++.+++.+++++.++
T Consensus       149 ---------------------q~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ik  207 (266)
T KOG0016|consen  149 ---------------------QSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIK  207 (266)
T ss_pred             ---------------------CCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHH
Confidence                                 77899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHH-HHHHHHHHHhhhhchHHHHH
Q psy9494         239 QMSKLSQS-MLADRATVLSECETCREEWM  266 (314)
Q Consensus       239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~  266 (314)
                      ++++.+|. ++..|++++......+....
T Consensus       208 q~s~l~p~sl~~~K~L~rs~~k~~l~~an  236 (266)
T KOG0016|consen  208 QYSKLSPESLLGMKKLLRSNIKEELIKAN  236 (266)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999 99999999876544433333

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=2.1e-38  Score=330.94  Aligned_cols=191  Identities=20%  Similarity=0.275  Sum_probs=170.0

Q ss_pred             cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCC--CCc-h---
Q psy9494          16 SVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN--PDT-K---   88 (314)
Q Consensus        16 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~-~---   88 (314)
                      .+.++. +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...  ... .   
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   86 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ   86 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence            567764 789999999999999999999999999999999999999999999999999999999987532  111 1   


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ......+.+.+  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lG-----------------------  143 (714)
T TIGR02437        87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLG-----------------------  143 (714)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcC-----------------------
Confidence            11112233333  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                                   +.|++|++++|++++|..+|++++++|++++|+||+++||||++++.+++.+++.++++++..
T Consensus       144 -------------l~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~  206 (714)
T TIGR02437       144 -------------IMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAIN  206 (714)
T ss_pred             -------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhh
Confidence                         777899999999999999999999999999999999999999999999999999999988543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=3.4e-38  Score=330.26  Aligned_cols=196  Identities=21%  Similarity=0.391  Sum_probs=169.0

Q ss_pred             hhccccEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEE-EEEcCCCCccccCCcccccCCCCch
Q psy9494          11 LRLVSSVCTKKILNITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLA-ILYGQEGNFCSGFDLHELDENPDTK   88 (314)
Q Consensus        11 ~~~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~v-Vltg~g~~F~aG~Dl~~~~~~~~~~   88 (314)
                      .+.+..+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus         9 ~~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~   88 (737)
T TIGR02441         9 LMARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ   88 (737)
T ss_pred             CCCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence            344567889999999999999998 58999999999999999999999999965 5699999999999999986422111


Q ss_pred             hH----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccccccccccccccchhhhhcc
Q psy9494          89 LF----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        89 ~~----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                      ..    ....+.+.+  ++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|                 
T Consensus        89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lG-----------------  151 (737)
T TIGR02441        89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLG-----------------  151 (737)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhC-----------------
Confidence            11    122233333  899999999999999999999999999999998  58999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-------------C
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC-------------G  227 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-------------~  227 (314)
                                         +.|++|++++|++++|..+|++++++|++++|+||+++||||+++++             +
T Consensus       152 -------------------l~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~  212 (737)
T TIGR02441       152 -------------------LLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIE  212 (737)
T ss_pred             -------------------CCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHH
Confidence                               77789999999999999999999999999999999999999999987             4


Q ss_pred             chHHHHHHHHHHHHh
Q psy9494         228 TAVGEAMTRAIQMSK  242 (314)
Q Consensus       228 ~l~~~a~~~a~~la~  242 (314)
                      ++.+.|.+++++++.
T Consensus       213 ~l~~~A~~~a~~l~~  227 (737)
T TIGR02441       213 YLEEVAVKFAQGLAN  227 (737)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            477888888877653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=4e-38  Score=318.92  Aligned_cols=199  Identities=15%  Similarity=0.239  Sum_probs=173.0

Q ss_pred             hccccEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-hCCCccEEEEEcC-CCCccccCCcc
Q psy9494          12 RLVSSVCTKKILNITLISLNRPD----------KINAINLKTLDALQENIKRFE-DDTESPLAILYGQ-EGNFCSGFDLH   79 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~----------~~Nal~~~~~~eL~~al~~~~-~d~~vr~vVltg~-g~~F~aG~Dl~   79 (314)
                      .-+++|.++++++|++||||||+          |.|++|.+|+.+|.+++++++ +|+++|+|||||. |++||+|+|++
T Consensus         8 ~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~   87 (546)
T TIGR03222         8 SQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIF   87 (546)
T ss_pred             CCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHH
Confidence            34667899999999999999976          899999999999999999999 7899999999987 58999999999


Q ss_pred             cccCCCCc-h--hHHHH----HHHHh--cCCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccc-cccccc
Q psy9494          80 ELDENPDT-K--LFDDF----REFLQ--KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRR-FVYLKD  147 (314)
Q Consensus        80 ~~~~~~~~-~--~~~~~----~~~~~--~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~-~G~~~~  147 (314)
                      ++...... .  .....    ..+..  .++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|    
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG----  163 (546)
T TIGR03222        88 MLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG----  163 (546)
T ss_pred             HHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC----
Confidence            87432111 0  10111    11111  2799999999999999999999999999999986  799999997 99    


Q ss_pred             cccccchhhhhcccccccccccccccccccccCCCCchHHHHHH--HHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494         148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG--QMIGTSRTMDMISLGRHITAREALDWGLCNKMVN  225 (314)
Q Consensus       148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~--~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~  225 (314)
                                                      +.|++|+..+++  +.+|..+|++|+++|++++|+||++|||||+++|
T Consensus       164 --------------------------------l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~  211 (546)
T TIGR03222       164 --------------------------------VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVK  211 (546)
T ss_pred             --------------------------------cCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeC
Confidence                                            777888888887  6999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHhCCHH
Q psy9494         226 CGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       226 ~~~l~~~a~~~a~~la~~~~~  246 (314)
                      ++++.+++.+++++|++.||.
T Consensus       212 ~~~l~~~a~~lA~~la~~~p~  232 (546)
T TIGR03222       212 PSQFDAAIAERAAELAAQSDR  232 (546)
T ss_pred             hHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999998875

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2e-37  Score=314.47  Aligned_cols=199  Identities=16%  Similarity=0.260  Sum_probs=173.0

Q ss_pred             hccccEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-hCCCccEEEEEcCC-CCccccCCcc
Q psy9494          12 RLVSSVCTKKILNITLISLNRP-------D---KINAINLKTLDALQENIKRFE-DDTESPLAILYGQE-GNFCSGFDLH   79 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp-------~---~~Nal~~~~~~eL~~al~~~~-~d~~vr~vVltg~g-~~F~aG~Dl~   79 (314)
                      +.++++.++++++|++||||||       +   +.|++|.+|+.+|.+++++++ +|+++|+|||||.+ ++||+|+|++
T Consensus        12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~   91 (550)
T PRK08184         12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIF   91 (550)
T ss_pred             CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHH
Confidence            4577899999999999999965       4   899999999999999999999 78999999999974 8999999999


Q ss_pred             cccCCCCch---hH---HHHHHHHh---cCCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccc-cccccc
Q psy9494          80 ELDENPDTK---LF---DDFREFLQ---KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRR-FVYLKD  147 (314)
Q Consensus        80 ~~~~~~~~~---~~---~~~~~~~~---~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~-~G~~~~  147 (314)
                      ++.......   ..   ......+.   .++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|    
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~G----  167 (550)
T PRK08184         92 MLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLG----  167 (550)
T ss_pred             hHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccc----
Confidence            875322110   00   11111111   1799999999999999999999999999999987  899999997 99    


Q ss_pred             cccccchhhhhcccccccccccccccccccccCCCCchHHHHHH--HHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494         148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG--QMIGTSRTMDMISLGRHITAREALDWGLCNKMVN  225 (314)
Q Consensus       148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~--~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~  225 (314)
                                                      +.|++|++++++  +++|..+|++++++|+.++|+||+++||||+++|
T Consensus       168 --------------------------------l~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~  215 (550)
T PRK08184        168 --------------------------------VLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVK  215 (550)
T ss_pred             --------------------------------cCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeC
Confidence                                            777888899998  7799999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHhCCHH
Q psy9494         226 CGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       226 ~~~l~~~a~~~a~~la~~~~~  246 (314)
                      ++++.+++.+++++|+..||.
T Consensus       216 ~d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        216 PSKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999998876

>KOG1682|consensus

Probab=100.00  E-value=7.7e-36  Score=264.13  Aligned_cols=234  Identities=22%  Similarity=0.283  Sum_probs=196.9

Q ss_pred             EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH-
Q psy9494          18 CTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF-   96 (314)
Q Consensus        18 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~-   96 (314)
                      .++.+++|-.|+||+|+|.|.++.+|+.+|++++....++.++|+|||+..|+.||+|.||+++-..++.+.....++. 
T Consensus        35 ~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc  114 (287)
T KOG1682|consen   35 LVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTC  114 (287)
T ss_pred             ccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHH
Confidence            4455689999999999999999999999999999999999999999999999999999999999876655433333222 


Q ss_pred             ---Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccc
Q psy9494          97 ---LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLR  171 (314)
Q Consensus        97 ---~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~  171 (314)
                         ...  ++|+||||-|||+|..+|+.|...||+++|+++++|..|...+|+                           
T Consensus       115 ~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGl---------------------------  167 (287)
T KOG1682|consen  115 TDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGL---------------------------  167 (287)
T ss_pred             HHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceee---------------------------
Confidence               221  999999999999999999999999999999999999999999994                           


Q ss_pred             ccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHH
Q psy9494         172 DNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLAD  250 (314)
Q Consensus       172 ~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~  250 (314)
                              +.  .....-+.|.+++..+.+|++||.+++++||+..|||+++||.+++..++.+++..|-..+.. +..-
T Consensus       168 --------FC--STPGvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slg  237 (287)
T KOG1682|consen  168 --------FC--STPGVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLG  237 (287)
T ss_pred             --------Ee--cCcchhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                    21  112235789999999999999999999999999999999999999999999999999999999 8888


Q ss_pred             HHHHHhhhhchHHHHHHHHHH-----------HHhhhHHHHHHhcCCCCCCC
Q psy9494         251 RATVLSECETCREEWMSERKH-----------YIGISFELKFLQKKKKAKNG  291 (314)
Q Consensus       251 K~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~af~ekr~p~~~~  291 (314)
                      |...+........+..+....           .+++   .+|++||+|.|+-
T Consensus       238 k~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegi---asf~~krp~~~~h  286 (287)
T KOG1682|consen  238 KEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGI---ASFFEKRPPNWKH  286 (287)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHH---HHHhccCCCCcCC
Confidence            988877766554443333211           1222   5999999999963

>KOG1684|consensus

Probab=99.96  E-value=9.6e-29  Score=234.29  Aligned_cols=179  Identities=22%  Similarity=0.307  Sum_probs=156.2

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCC---c-hh
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPD---T-KL   89 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~---~-~~   89 (314)
                      +.|.++..++...||||||+..||+|.+|...+...|...+.++.+++||+.|+ |++||+|+|+........   . ..
T Consensus        38 ~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~  117 (401)
T KOG1684|consen   38 DQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEV  117 (401)
T ss_pred             CceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHH
Confidence            468899999999999999999999999999999999999999999999999988 599999999986543221   1 11


Q ss_pred             HHHHHHHHh---c--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 FDDFREFLQ---K--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ~~~~~~~~~---~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                      ...+.+.+.   .  ++.||.||.++|..+|||++|....-||||+|++.|.+||..+|                     
T Consensus       118 ~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IG---------------------  176 (401)
T KOG1684|consen  118 KKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIG---------------------  176 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccc---------------------
Confidence            122222221   1  99999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchH
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAV  230 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~  230 (314)
                                     +.|+.|+++.++|+.| ....++.+||.++++.||+..||.++-|+.+++-
T Consensus       177 ---------------lfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~  226 (401)
T KOG1684|consen  177 ---------------LFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEKLP  226 (401)
T ss_pred             ---------------cccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhhhh
Confidence                           6668899999999998 7889999999999999999999999999987653

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.81  E-value=6.6e-20  Score=161.24  Aligned_cols=150  Identities=19%  Similarity=0.146  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCcccccccc
Q psy9494          42 KTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLD  119 (314)
Q Consensus        42 ~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~  119 (314)
                      -.+.+|.++++++++|+++|+|||++    +|.|.|+....         .+.+.+..  .++|||||+|+|.|.|+|+.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~---------~~~~~i~~~~~~~kpVia~v~G~a~g~g~~   88 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE---------VIRAELAAARAAGKPVVASGGGNAASGGYW   88 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH---------HHHHHHHHHHhCCCCEEEEECCchhHHHHH
Confidence            35789999999999999999999997    68888876421         22222222  68999999999999999999


Q ss_pred             ccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhh--HH
Q psy9494         120 LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG--TS  197 (314)
Q Consensus       120 lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG--~~  197 (314)
                      ++++||++++++++.|+.+....+.                .+...   .+         -.........+++..|  +.
T Consensus        89 la~a~D~i~a~~~a~~~~~G~~~~~----------------~~~~~---~l---------~~~~~~~~~~v~~~rg~~~~  140 (177)
T cd07014          89 ISTPANYIVANPSTLVGSIGIFGVQ----------------LADQL---SI---------ENGYKRFITLVADNRHSTPE  140 (177)
T ss_pred             HHHhCCEEEECCCCeEEEechHhhH----------------HHHHH---HH---------HHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999977655440                00000   00         0000011224455555  77


Q ss_pred             HHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH
Q psy9494         198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGE  232 (314)
Q Consensus       198 ~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~  232 (314)
                      ..++++..|+.++|++|++.||||++.+.+++.+.
T Consensus       141 ~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~  175 (177)
T cd07014         141 QQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAK  175 (177)
T ss_pred             HhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHH
Confidence            78899999999999999999999999987766543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.79  E-value=9.7e-19  Score=155.48  Aligned_cols=164  Identities=16%  Similarity=0.172  Sum_probs=114.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEE-cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          26 TLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        26 ~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      +.|.++     ..++..+...+.+.|+.+++|+ ++.|+|. ..+     |+++..         ...+...+. .+|||
T Consensus         2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~---------~~~i~~~l~-~~~kP   60 (187)
T cd07020           2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS---------TREIVQAIL-ASPVP   60 (187)
T ss_pred             EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH---------HHHHHHHHH-hCCCC
Confidence            456664     3466778889999999999765 7888877 332     222211         112223333 79999


Q ss_pred             EEEEEc---CccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494         105 IIAAIT---GYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP  181 (314)
Q Consensus       105 vIAav~---G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                      ||++|+   |+|+|||+.++++||+++++++++|+.++...+..+ .        .        .....+.++..+    
T Consensus        61 via~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~-~--------~--------~~~~~~~~~~~~----  119 (187)
T cd07020          61 VVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGG-G--------G--------SDPVMEKKILND----  119 (187)
T ss_pred             EEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCC-C--------c--------chHHHHHHHHHH----
Confidence            999999   999999999999999999999999999888744100 0        0        000000000000    


Q ss_pred             CCchHHHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC-chHHH
Q psy9494         182 TCDVTIRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG-TAVGE  232 (314)
Q Consensus       182 p~~g~~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~-~l~~~  232 (314)
                       -.+....+++..|.  .++++++++|+.|+|+||+++||||++++++ ++...
T Consensus       120 -~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         120 -AVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence             01245678888997  6899999999999999999999999999885 56544

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.71  E-value=4.6e-17  Score=147.32  Aligned_cols=186  Identities=18%  Similarity=0.165  Sum_probs=121.3

Q ss_pred             EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCC
Q psy9494          25 ITLISLNRP--DKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAK  102 (314)
Q Consensus        25 v~~itlnrp--~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  102 (314)
                      |++|.++-|  ++.+.-+..++.++.++|+++.+||++++|||+    .||+|+|+..+..     . ......+. .++
T Consensus         2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-----~-~~~l~~~~-~~~   70 (211)
T cd07019           2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-----I-RAELAAAR-AAG   70 (211)
T ss_pred             EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-----H-HHHHHHHH-hCC
Confidence            555555433  122333455789999999999999999999998    7999999976531     1 11122233 679


Q ss_pred             CcEEEEEcCccccccccccccCcEEEEeCCeEeeccccc--cccccccccccchhhhhccc-cccccccccccccccccc
Q psy9494         103 KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR--FVYLKDSLLSSGVVLYALHV-PRTQLKHSLRDNLSRDLA  179 (314)
Q Consensus       103 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~--~G~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  179 (314)
                      |||||+++|+|.|+|+.|+++||+++|++++.++.--..  .-.+...+.++||-+...|+ +..+...  .+.      
T Consensus        71 kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~--~~~------  142 (211)
T cd07019          71 KPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSI--TRA------  142 (211)
T ss_pred             CCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCC--CCC------
Confidence            999999999999999999999999999999988722111  00124456677877777766 4333211  110      


Q ss_pred             CCCCchHHHHHHHHhh-----------HH-----HHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH
Q psy9494         180 IPTCDVTIRRLGQMIG-----------TS-----RTMDMISLGRHITAREALDWGLCNKMVNCGTAVG  231 (314)
Q Consensus       180 ~~p~~g~~~~l~~~vG-----------~~-----~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~  231 (314)
                      +.  .-....+...+.           ..     ...+-+..|+.+++++|++.||||++...+++.+
T Consensus       143 ~s--~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~  208 (211)
T cd07019         143 LP--PEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA  208 (211)
T ss_pred             CC--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence            11  111111112121           11     1233466899999999999999999987665544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.64  E-value=2.1e-15  Score=136.68  Aligned_cols=176  Identities=16%  Similarity=0.168  Sum_probs=117.4

Q ss_pred             cCCCCCCC-CCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEE
Q psy9494          31 NRPDKINA-INLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIA  107 (314)
Q Consensus        31 nrp~~~Na-l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIA  107 (314)
                      ++|...|+ ++..++.++.++|+++++|+++++|||+.    +|.|.++...         ..+.+.+..  . +|||||
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~---------~~l~~~l~~~~~-~KpViA   78 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV---------FELADAIRAARA-GKPIVA   78 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH---------HHHHHHHHHHhc-CCCEEE
Confidence            45555565 45689999999999999999999999975    4556554322         223333331  3 799999


Q ss_pred             EEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCch
Q psy9494         108 AITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV  185 (314)
Q Consensus       108 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g  185 (314)
                      +++|.|.|+|+.++++||.++|++++.|+..-+...  .+...|.++||-+..++....+-..++-        -++...
T Consensus        79 ~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~--------~~~s~~  150 (214)
T cd07022          79 FVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPD--------EPLSDE  150 (214)
T ss_pred             EECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCC--------CCCCHH
Confidence            999999999999999999999999998865433222  1345667788877777775443222211        111111


Q ss_pred             HHHHHHH-----------HhhH------HHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchH
Q psy9494         186 TIRRLGQ-----------MIGT------SRTMDMISLGRHITAREALDWGLCNKMVNCGTAV  230 (314)
Q Consensus       186 ~~~~l~~-----------~vG~------~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~  230 (314)
                      ....+..           .|..      ....+++  |+.++|++|++.||||++...+++.
T Consensus       151 ~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~  210 (214)
T cd07022         151 ARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL  210 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence            1111222           2221      2223444  9999999999999999998766544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.61  E-value=2.6e-15  Score=135.29  Aligned_cols=183  Identities=19%  Similarity=0.218  Sum_probs=122.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK  102 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~  102 (314)
                      |++|.++-+=...  ...++.+|.++|+.++.|+++++|+|++    +|.|+|+...         ..+.+.+..  .++
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~---------~~i~~~i~~~~~~~   66 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS---------EEIYREIRRLRKAK   66 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH---------HHHHHHHHHHHhcC
Confidence            4566665321101  3689999999999999999999999998    4778887542         112222222  679


Q ss_pred             CcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccC
Q psy9494         103 KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAI  180 (314)
Q Consensus       103 kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (314)
                      |||||+++|.|.|+|+.++++||.+++++++.|+..-....  .+..+|.++||-+..+|....+-...+.+.      .
T Consensus        67 kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~------~  140 (208)
T cd07023          67 KPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP------L  140 (208)
T ss_pred             CcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC------C
Confidence            99999999999999999999999999999998864322211  134567778888888777544433332211      1


Q ss_pred             CCCchHHHHHHHHhhH-----------HH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchH
Q psy9494         181 PTCDVTIRRLGQMIGT-----------SR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAV  230 (314)
Q Consensus       181 ~p~~g~~~~l~~~vG~-----------~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~  230 (314)
                        .......+..++..           .|     ..+-+..|..+++++|++.||||++...+++.
T Consensus       141 --s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~  204 (208)
T cd07023         141 --TEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAI  204 (208)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence              11122222222221           11     12336789999999999999999998755544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.61  E-value=9.3e-16  Score=157.73  Aligned_cols=202  Identities=21%  Similarity=0.234  Sum_probs=129.0

Q ss_pred             EeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC---CCCccccCCcccccCCCCchhHHHHHH
Q psy9494          21 KILNITLISLNRPD--KINAINLKTLDALQENIKRFEDDTESPLAILYGQ---EGNFCSGFDLHELDENPDTKLFDDFRE   95 (314)
Q Consensus        21 ~~~~v~~itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~   95 (314)
                      .+++|++|+++.+=  ..|..+....+.+.+.|+++.+|++|++|||+-.   |..|++                +.+++
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----------------e~i~~  369 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----------------EIIRR  369 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----------------HHHHH
Confidence            46789999998763  2344444456788899999999999999999943   334543                11222


Q ss_pred             HHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccc---cccccccchhhhhcccccccccccc
Q psy9494          96 FLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYL---KDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        96 ~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~---~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      .+..  ..+|||||.++|.|++||+.++++||.++|++++.+|---+- +..   ...+..+||......+...+-....
T Consensus       370 ~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~-~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~  448 (584)
T TIGR00705       370 ELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVF-SVLPTFENSLDRIGVHVDGVSTHELANVSLL  448 (584)
T ss_pred             HHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEE-EEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence            2221  567999999999999999999999999999999977422111 100   0122345554444433222111000


Q ss_pred             cccccccccCC--CCchHHHHHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         171 RDNLSRDLAIP--TCDVTIRRLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       171 ~~~~~~~~~~~--p~~g~~~~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                      +...+.+....  --......|...|+..|     +.+.+.+|+.|+|+||+++||||++.   .+ ++|.+.|++++..
T Consensus       449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~  524 (584)
T TIGR00705       449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC  524 (584)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence            00000000000  00112334455677766     77889999999999999999999995   33 6788888888887

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.55  E-value=3e-14  Score=128.55  Aligned_cols=183  Identities=19%  Similarity=0.206  Sum_probs=117.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKK  103 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~k  103 (314)
                      |++|+++.+=     + ....+|.++|+.+.+|+++++|||++.    |.|+++...         ..+.+.+.. +.+|
T Consensus         2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~---------~~l~~~i~~~~~~k   62 (207)
T TIGR00706         2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS---------EEIYEKLKKLKAKK   62 (207)
T ss_pred             EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH---------HHHHHHHHHhcCCC
Confidence            5556665321     1 346789999999999999999999974    666666422         223333331 2359


Q ss_pred             cEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCC
Q psy9494         104 PIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP  181 (314)
Q Consensus       104 PvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                      ||||.++|.|.|+|+.++++||.++|++++.++..-+...  .+...|.++||-...++....+-..++.+        +
T Consensus        63 pvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~--------~  134 (207)
T TIGR00706        63 PVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTR--------E  134 (207)
T ss_pred             CEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCC--------C
Confidence            9999999999999999999999999999998764322211  13455677777666665543332211110        1


Q ss_pred             CCchHHHHHHHHhh-----------------HHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHH
Q psy9494         182 TCDVTIRRLGQMIG-----------------TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT  235 (314)
Q Consensus       182 p~~g~~~~l~~~vG-----------------~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~  235 (314)
                      +.......+...+.                 .... +-++.|+.+++++|++.||||++...+++.+.+.+
T Consensus       135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~-~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~  204 (207)
T TIGR00706       135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDV-KKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAE  204 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            11111111211111                 1112 23578999999999999999999877766555443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.51  E-value=9.7e-14  Score=119.65  Aligned_cols=148  Identities=24%  Similarity=0.246  Sum_probs=100.8

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy9494          39 INLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGL  118 (314)
Q Consensus        39 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~  118 (314)
                      ++..+..++.+.|+.++.|+.+++|+|..    .|.|.|+...         ..+.+.+. .++||||+.++|.|.++|+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~---------~~i~~~l~-~~~kpvva~~~g~~~s~g~   73 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG---------MNIVDALQ-ASRKPVIAYVGGQAASAGY   73 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH---------HHHHHHHH-HhCCCEEEEECChhHHHHH
Confidence            45688999999999999999999999986    3556655321         22333343 6779999999999999999


Q ss_pred             cccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHh----
Q psy9494         119 DLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI----  194 (314)
Q Consensus       119 ~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~v----  194 (314)
                      .|+++||.|++.+++.|++.....+.       .|..-     |...         +.....  -......+...+    
T Consensus        74 ~la~~~d~~~~~~~a~~~~~g~~~~~-------~~~~~-----~~~~---------~~~~~~--l~~~~~~~~~~v~~~r  130 (161)
T cd00394          74 YIATAANKIVMAPGTRVGSHGPIGGY-------GGNGN-----PTAQ---------EADQRI--ILYFIARFISLVAENR  130 (161)
T ss_pred             HHHhCCCEEEECCCCEEEEeeeEEec-------CCCCC-----hHHH---------HHHHHH--HHHHHHHHHHHHHHhc
Confidence            99999999999999999977666541       00000     0000         000000  000112222222    


Q ss_pred             --hHHHHHHHHhcCCCCCHHHHHHCCCceee
Q psy9494         195 --GTSRTMDMISLGRHITAREALDWGLCNKM  223 (314)
Q Consensus       195 --G~~~a~~lll~G~~~sA~eA~~~GLV~~v  223 (314)
                        ......+.+..|..++|+||+++||||++
T Consensus       131 ~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             CCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence              23346778888999999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.46  E-value=2.2e-13  Score=124.26  Aligned_cols=177  Identities=17%  Similarity=0.092  Sum_probs=117.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQG  117 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG  117 (314)
                      .-+..++.++.++|+++.+|++|++|||+..+..| ++.++.++.        +.+ ..+. ..+|||||.++| |.+||
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~--------~~i-~~~~-~~~kpVia~~~~-~~sgg   92 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR--------QAL-ERFR-ASGKPVIAYADG-YSQGQ   92 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH--------HHH-HHHH-HhCCeEEEEeCC-CCchh
Confidence            33567899999999999999999999999987777 666665542        111 1222 478999999998 88999


Q ss_pred             ccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCchHHH-------
Q psy9494         118 LDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIR-------  188 (314)
Q Consensus       118 ~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~-------  188 (314)
                      +.++++||.++|++++.|+..-+...  .+...|.++||-...++....+-..++  +...    ++......       
T Consensus        93 y~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~--~~~~----~~s~~~r~~~~~~l~  166 (222)
T cd07018          93 YYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEP--FTRD----DMSPEAREQTQALLD  166 (222)
T ss_pred             hhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccch--hhcc----cCCHHHHHHHHHHHH
Confidence            99999999999999998886433322  134456777877776666443322111  1000    00111111       


Q ss_pred             ----HHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH
Q psy9494         189 ----RLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGE  232 (314)
Q Consensus       189 ----~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~  232 (314)
                          .+...|-..|     ..+-+..|+.++|++|++.||||++...+++.+.
T Consensus       167 ~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~  219 (222)
T cd07018         167 SLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEAR  219 (222)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence                1222222211     1233556999999999999999999977766554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.44  E-value=1.6e-13  Score=118.64  Aligned_cols=129  Identities=16%  Similarity=0.221  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccccccc
Q psy9494          42 KTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLA  121 (314)
Q Consensus        42 ~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~la  121 (314)
                      .+.+.+.+.|+.++.++.+ .+.|-+.|+...+|.               .+.+.+. .++||||+.++|.|.|+|+.++
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~~~---------------~i~~~i~-~~~~pvi~~v~g~a~s~g~~ia   77 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFAGL---------------AIYNALK-RHKGKVTVKIDGLAASAASVIA   77 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHHHH---------------HHHHHHH-hcCCCEEEEEcchHHhHHHHHH
Confidence            5677888889999887433 455556665443332               2223333 6899999999999999999999


Q ss_pred             ccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCch---------------H
Q psy9494         122 LWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV---------------T  186 (314)
Q Consensus       122 lacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g---------------~  186 (314)
                      ++||.|++++++.|++.....+                                    .++...               .
T Consensus        78 ~a~d~~~~~~~a~~~~~~~~~~------------------------------------~~g~~~~~~~~~~~l~~~~~~~  121 (160)
T cd07016          78 MAGDEVEMPPNAMLMIHNPSTG------------------------------------AAGNADDLRKAADLLDKIDESI  121 (160)
T ss_pred             hcCCeEEECCCcEEEEECCccc------------------------------------cCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998666554                                    221111               2


Q ss_pred             HHHHHHHhh--HHHHHHHHhcCCCCCHHHHHHCCCceee
Q psy9494         187 IRRLGQMIG--TSRTMDMISLGRHITAREALDWGLCNKM  223 (314)
Q Consensus       187 ~~~l~~~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~v  223 (314)
                      ...+.+..|  .....+++..+..++|+||+++||||++
T Consensus       122 ~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016         122 ANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             HHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            334677778  5677777777888999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>PRK10949 protease 4; Provisional

Probab=99.19  E-value=2e-10  Score=118.90  Aligned_cols=188  Identities=21%  Similarity=0.202  Sum_probs=114.2

Q ss_pred             eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--CCCccccCCcccccCCCCchhHHHHH
Q psy9494          22 ILNITLISLNRP-----DKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--EGNFCSGFDLHELDENPDTKLFDDFR   94 (314)
Q Consensus        22 ~~~v~~itlnrp-----~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~~~~~~~~   94 (314)
                      .+.|++|.++-.     ...+.++.   +.+.+.|+++.+|++|++|||+-.  |+...+               .+.++
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~a---------------se~i~  386 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTA---------------SEVIR  386 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCCCcHHH---------------HHHHH
Confidence            567999988632     22233443   567888999999999999999943  321111               12333


Q ss_pred             HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeecccccccc---ccccccccchhhhhccccccccccc
Q psy9494          95 EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVY---LKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        95 ~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~---~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      +.+.+  ...|||||.+.|.|..||+.++++||.++|.+.+..|---+ +|.   +...|.++||-.....+....-. +
T Consensus       387 ~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV-~~~~~~~~~ll~klGV~~~~~~~~~~~~~-~  464 (618)
T PRK10949        387 AELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGI-FGVINTVENSLDSIGVHTDGVSTSPLADV-S  464 (618)
T ss_pred             HHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcE-EEEccCHHHHHHhcCCceeEEeccccCCc-c
Confidence            33332  56799999999999999999999999999999875542111 111   12245566665554443111100 1


Q ss_pred             ccccccccccCCCCchHH-----------HHHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHH
Q psy9494         170 LRDNLSRDLAIPTCDVTI-----------RRLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEA  233 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~-----------~~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a  233 (314)
                      ..        -+......           ..|...|-..|     ..+-+..|+.|++++|++.||||++...+++.+.|
T Consensus       465 ~~--------~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a  536 (618)
T PRK10949        465 IT--------KALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA  536 (618)
T ss_pred             cc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHH
Confidence            11        01111111           12222222222     12346899999999999999999998766655555


Q ss_pred             HHHH
Q psy9494         234 MTRA  237 (314)
Q Consensus       234 ~~~a  237 (314)
                      .+++
T Consensus       537 ~~~a  540 (618)
T PRK10949        537 AELA  540 (618)
T ss_pred             HHHc
Confidence            5543

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.16  E-value=4.6e-10  Score=99.43  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .+++.+.+.+.++|+++++++ ++.|++.  +.|+...++               ..+.+.+. .+++|||+.|+|.|.|
T Consensus         9 ~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~---------------~~I~~~l~-~~~~pvva~V~g~AaS   71 (178)
T cd07021           9 EIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSA---------------LEIVDLIL-NSPIPTIAYVNDRAAS   71 (178)
T ss_pred             EECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHH---------------HHHHHHHH-hCCCCEEEEECCchHH
Confidence            566788889999999999986 7777776  333322221               22333333 7899999999999999


Q ss_pred             ccccccccCcEEEEeCCeEeecccc
Q psy9494         116 QGLDLALWCDLRFVEENVLMGFYNR  140 (314)
Q Consensus       116 gG~~lalacD~~ia~~~a~f~~pe~  140 (314)
                      +|+.++++||++++++++.||.+..
T Consensus        72 aG~~ia~a~d~i~m~p~a~iG~~~~   96 (178)
T cd07021          72 AGALIALAADEIYMAPGATIGAAEP   96 (178)
T ss_pred             HHHHHHHhCCeEEECCCCeEecCee
Confidence            9999999999999999999986644

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.03  E-value=1.9e-09  Score=103.55  Aligned_cols=171  Identities=20%  Similarity=0.248  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCcccccccc
Q psy9494          43 TLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYAVGQGLD  119 (314)
Q Consensus        43 ~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a~GgG~~  119 (314)
                      ..+.+.+.|+.+..|+++++|+|.  +.|+.-.+               ...+.+.+.+ .-.|||++.|+++|+.||+.
T Consensus        81 ~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a---------------s~~i~~~l~~l~~~~PV~v~v~~~AASGGY~  145 (317)
T COG0616          81 GGDDIEEILRAARADPSVKAVVLRINSPGGSVVA---------------SELIARALKRLRAKKPVVVSVGGYAASGGYY  145 (317)
T ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEECcCCchhH---------------HHHHHHHHHHHhhcCCEEEEECCeecchhhh
Confidence            356666779999999999999998  33433222               1223333333 33349999999999999999


Q ss_pred             ccccCcEEEEeCCeEeecccccccc--ccccccccchhhhhcccccccccccccccccccccCCCCchH-----------
Q psy9494         120 LALWCDLRFVEENVLMGFYNRRFVY--LKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT-----------  186 (314)
Q Consensus       120 lalacD~~ia~~~a~f~~pe~~~G~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~-----------  186 (314)
                      +|++||.++|++++..|---+..+.  +...+.++||-.........+-..+.      -  .+.....           
T Consensus       146 IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~------~--~~~t~e~~~~~q~~~~e~  217 (317)
T COG0616         146 IALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSP------F--RPLTEEEREILQKEIDET  217 (317)
T ss_pred             hhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCc------c--cCCCHHHHHHHHHHHHHH
Confidence            9999999999999876521111110  11223344433333322221111110      0  1111111           


Q ss_pred             HHHHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494         187 IRRLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR  236 (314)
Q Consensus       187 ~~~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~  236 (314)
                      ...|...|...|     ...-+.+|+.|++++|++.||||++...++....+.+.
T Consensus       218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~  272 (317)
T COG0616         218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL  272 (317)
T ss_pred             HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence            222333333222     23578899999999999999999998765544444443

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.77  E-value=1.2e-07  Score=83.58  Aligned_cols=154  Identities=19%  Similarity=0.222  Sum_probs=98.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEc---Cc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAIT---GY  112 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~---G~  112 (314)
                      .+++.+...|.++++++++| +++.|+|.  +.|+...++               ..+.+.+. ..++||++.|+   |.
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~---------------~~I~~~i~-~~~~pvv~~v~p~g~~   71 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAA---------------GNIVQRIQ-QSKIPVIIYVYPPGAS   71 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHH---------------HHHHHHHH-hcCcCEEEEEecCCCe
Confidence            46677888899999999876 57777776  334333222               22333333 57999999999   99


Q ss_pred             cccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494         113 AVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ  192 (314)
Q Consensus       113 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~  192 (314)
                      |.++|+.++++||.+++.+++.++....-.|.        |         .........+++..+..     .-..-+.+
T Consensus        72 AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~--------g---------~~~~~~~~~~ki~~~~~-----~~~r~~A~  129 (172)
T cd07015          72 AASAGTYIALGSHLIAMAPGTSIGACRPILGY--------S---------QNGSIIEAPPKITNYFI-----AYIKSLAQ  129 (172)
T ss_pred             ehhHHHHHHHhcCceEECCCCEEEEccccccC--------C---------CCCccccchHHHHHHHH-----HHHHHHHH
Confidence            99999999999999999999998754442210        0         00000000111111110     01111333


Q ss_pred             Hhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchH
Q psy9494         193 MIG--TSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAV  230 (314)
Q Consensus       193 ~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~  230 (314)
                      .-|  ...+..++.....+||+||+++|++|.+... ++++
T Consensus       130 ~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll  170 (172)
T cd07015         130 ESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL  170 (172)
T ss_pred             HHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence            334  2457788888899999999999999999986 4443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.73  E-value=1.4e-07  Score=91.08  Aligned_cols=189  Identities=13%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEc--CCCCccccCCcccccCCCCchhHHHHHHHHhc
Q psy9494          22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG--QEGNFCSGFDLHELDENPDTKLFDDFREFLQK   99 (314)
Q Consensus        22 ~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg--~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   99 (314)
                      .+.|++|.++.+=..+. ...+.+++.+.++.+..+   ..|||+-  .|+.- .|.++          ....+. .+. 
T Consensus        89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridSpGG~v-~~s~~----------a~~~l~-~lr-  151 (330)
T PRK11778         89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLESPGGVV-HGYGL----------AASQLQ-RLR-  151 (330)
T ss_pred             CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeCCCCch-hHHHH----------HHHHHH-HHH-
Confidence            46799999875432111 223456666666666543   4677773  33221 11111          011111 122 


Q ss_pred             CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhccccccccccccccccccc
Q psy9494         100 PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRD  177 (314)
Q Consensus       100 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      ...||+++++++.|..||+.+|++||-++|.+.+.+|.-.+-..  .+...|.++||-...+.....+-..++-      
T Consensus       152 ~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf------  225 (330)
T PRK11778        152 DAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLF------  225 (330)
T ss_pred             hcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCC------
Confidence            56899999999999999999999999999999987653322211  0223455566655555443332211110      


Q ss_pred             ccCCCCchHH-----------HHHHHHhhHHH---HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHH
Q psy9494         178 LAIPTCDVTI-----------RRLGQMIGTSR---TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT  235 (314)
Q Consensus       178 ~~~~p~~g~~-----------~~l~~~vG~~~---a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~  235 (314)
                        .+......           ..+...|-..|   ..+-+.+|+.|+|++|++.||||++...+++...+.+
T Consensus       226 --~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~  295 (330)
T PRK11778        226 --GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK  295 (330)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence              11111111           12222222222   2345789999999999999999999987776654444

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.65  E-value=7.5e-08  Score=83.93  Aligned_cols=85  Identities=16%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+++.+.|..++.++.++.|+|.  +.|+...+|               ..+.+.++ ..++||++.+.|.|++
T Consensus         8 ~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~---------------~~i~~~i~-~~~~~v~~~~~g~aaS   71 (162)
T cd07013           8 EVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAG---------------MAIYDTIK-FIKADVVTIIDGLAAS   71 (162)
T ss_pred             EECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHH---------------HHHHHHHH-hcCCCceEEEEeehhh
Confidence            34678899999999999998877777776  444332221               22333444 6788999999999999


Q ss_pred             ccccccccCc--EEEEeCCeEeecc
Q psy9494         116 QGLDLALWCD--LRFVEENVLMGFY  138 (314)
Q Consensus       116 gG~~lalacD--~~ia~~~a~f~~p  138 (314)
                      +|..++++||  .|++.+++++.+.
T Consensus        72 ~~~~i~~a~~~g~r~~~p~a~~~ih   96 (162)
T cd07013          72 MGSVIAMAGAKGKRFILPNAMMMIH   96 (162)
T ss_pred             HHHHHHHcCCCCcEEEecCEEEEEc
Confidence            9999999999  6888888877643

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=98.49  E-value=1.1e-07  Score=82.02  Aligned_cols=129  Identities=22%  Similarity=0.262  Sum_probs=81.4

Q ss_pred             CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhccccccccccccccccccc
Q psy9494         100 PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRD  177 (314)
Q Consensus       100 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      ...|||||.++|.+.++|+.++.+||-+++.+.+.++..-+...  .+..+|.++||-.-.++....+-..+.++.++  
T Consensus         4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s--   81 (154)
T PF01343_consen    4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS--   81 (154)
T ss_dssp             HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS----
T ss_pred             ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC--
Confidence            47899999999999999999999999999999987664333211  13567788888777777755554433332211  


Q ss_pred             ccCCCCchHHHHHHH-----------HhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494         178 LAIPTCDVTIRRLGQ-----------MIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR  236 (314)
Q Consensus       178 ~~~~p~~g~~~~l~~-----------~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~  236 (314)
                            ......+.+           .|-..|     ..+-+..|..++|++|++.||||++...+++...+.+.
T Consensus        82 ------~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~  150 (154)
T PF01343_consen   82 ------EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL  150 (154)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence                  112222222           222222     12336899999999999999999998777666655543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.38  E-value=3e-06  Score=87.75  Aligned_cols=175  Identities=18%  Similarity=0.101  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccccccccc
Q psy9494          43 TLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDL  120 (314)
Q Consensus        43 ~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~l  120 (314)
                      .+.++.++|+.+.+|+.|++|||.-.+   +.|.++..         .+.+.+.+.+  ...|||||..++++ .+|+.+
T Consensus        77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~---------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~Yyl  143 (584)
T TIGR00705        77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPH---------LVEIGSALSEFKDSGKPVYAYGTNYS-QGQYYL  143 (584)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHH---------HHHHHHHHHHHHhcCCeEEEEEcccc-chhhhh
Confidence            578999999999999999999999642   11222211         1223333222  57899999888775 788999


Q ss_pred             cccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCchHHHH---------
Q psy9494         121 ALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRR---------  189 (314)
Q Consensus       121 alacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~---------  189 (314)
                      |.+||-+++.+...+++.-....  +++..|.++||-.-.++....+-...+  ++..++    ..-....         
T Consensus       144 As~AD~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~ep--f~r~~m----S~e~re~~~~~l~~l~  217 (584)
T TIGR00705       144 ASFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEP--FSRKDM----SPEARRNYQRWLGELW  217 (584)
T ss_pred             hhhCCEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCc--ccCCCC----CHHHHHHHHHHHHHHH
Confidence            99999999999887754322211  256778888988888877655543322  110110    1111111         


Q ss_pred             --HHHHhhHHHH-----HHHHhcCC--------CCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494         190 --LGQMIGTSRT-----MDMISLGR--------HITAREALDWGLCNKMVNCGTAVGEAMTR  236 (314)
Q Consensus       190 --l~~~vG~~~a-----~~lll~G~--------~~sA~eA~~~GLV~~vv~~~~l~~~a~~~  236 (314)
                        +...|...|.     .+-...|+        ..+|++|++.||||++...+++.+...+.
T Consensus       218 ~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~~~l~~~  279 (584)
T TIGR00705       218 QNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGKALKFL  279 (584)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHHHHHHHH
Confidence              2222222210     11112222        23899999999999999877766655443

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>KOG1683|consensus

Probab=98.36  E-value=2.5e-07  Score=89.52  Aligned_cols=173  Identities=14%  Similarity=0.096  Sum_probs=125.7

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCch---hHHHHHHHHhc
Q psy9494          24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTK---LFDDFREFLQK   99 (314)
Q Consensus        24 ~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~---~~~~~~~~~~~   99 (314)
                      ++..+.|+ |+. |..|.++..+|...++.++.+..+++.++|+.. +-|++|.|..+........   ..-.+.+.+..
T Consensus        66 ~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~  143 (380)
T KOG1683|consen   66 GFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA  143 (380)
T ss_pred             ccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence            68888888 664 999999999999999999999989999999876 8999999999876433222   22334444433


Q ss_pred             --CCCCcEEEEEcCcccccc--ccccccCcEEEEeCCe--Eeeccccccccccccccccchhhhhccccccccccccccc
Q psy9494         100 --PAKKPIIAAITGYAVGQG--LDLALWCDLRFVEENV--LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDN  173 (314)
Q Consensus       100 --~~~kPvIAav~G~a~GgG--~~lalacD~~ia~~~a--~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  173 (314)
                        .++.|+.+|+||.+--||  +-++.+|+|++.....  ..+..+...++        |                    
T Consensus       144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~--------g--------------------  195 (380)
T KOG1683|consen  144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEI--------G--------------------  195 (380)
T ss_pred             cCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHc--------C--------------------
Confidence              999999999999999888  8899999999987432  23455555541        2                    


Q ss_pred             ccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC--CchHHHHH
Q psy9494         174 LSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC--GTAVGEAM  234 (314)
Q Consensus       174 ~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~--~~l~~~a~  234 (314)
                            .+|  .-.-.+....|...+-..+..|.-++-+||.+-|+++++.+.  +++.+..+
T Consensus       196 ------~~p--~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~  250 (380)
T KOG1683|consen  196 ------ADP--WLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGR  250 (380)
T ss_pred             ------CCH--HHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHHHHHHHHh
Confidence                  221  112222333444444556778888999999999999999984  44444433

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.32  E-value=1.5e-06  Score=78.75  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=93.6

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+..++.+.|..++..+..+.|.|.  +.|+..-+|.               .+.+.++ ..+.||++.+.|.|++
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~---------------~I~d~i~-~~~~~v~t~~~G~aaS  106 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGD---------------AIYDTIQ-FIRPDVQTVCTGQAAS  106 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHH---------------HHHHHHH-hcCCCcEEEEEeehhh
Confidence            56789999999999999876544444443  4454433322               2333333 5677999999999999


Q ss_pred             ccccccccCc--EEEEeCCeEeecccccc-ccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494         116 QGLDLALWCD--LRFVEENVLMGFYNRRF-VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ  192 (314)
Q Consensus       116 gG~~lalacD--~~ia~~~a~f~~pe~~~-G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~  192 (314)
                      .|..++++||  .|++.+++.|.+-.... |-      .-|              ...+-..+.+-..-........+.+
T Consensus       107 aa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~------~~G--------------~a~d~~~~~~~l~~~~~~~~~~ya~  166 (207)
T PRK12553        107 AGAVLLAAGTPGKRFALPNARILIHQPSLGGG------IRG--------------QASDLEIQAREILRMRERLERILAE  166 (207)
T ss_pred             HHHHHHHcCCcCcEEECCCchhhhcCccccCC------Ccc--------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999  58999999887544321 10      000              0000000000000000001122233


Q ss_pred             Hhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         193 MIG--TSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       193 ~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      .-|  .....+++-.+..++|+||+++||||++++.
T Consensus       167 ~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        167 HTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence            333  2445567778899999999999999999975

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.30  E-value=1.5e-06  Score=76.34  Aligned_cols=149  Identities=17%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+..++...+..+..++..+.|+|.  +.|+...+|               ..+.+.++ ..+.|+++.+.|.|.+
T Consensus        17 ~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~---------------~~i~~~l~-~~~~~v~t~~~g~aaS   80 (171)
T cd07017          17 PIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAG---------------LAIYDTMQ-YIKPPVSTICLGLAAS   80 (171)
T ss_pred             EEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHH---------------HHHHHHHH-hcCCCEEEEEEeEehh
Confidence            45678889999999999987665655555  445433322               22333333 5689999999999999


Q ss_pred             ccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         116 QGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       116 gG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      +|..+++++|  -|++.+++.|.+-+...+       ..|-. -+++..             .+....-.......+...
T Consensus        81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~-------~~g~~-~~~~~~-------------~~~l~~~~~~~~~~~~~~  139 (171)
T cd07017          81 MGALLLAAGTKGKRYALPNSRIMIHQPLGG-------AGGQA-SDIEIQ-------------AKEILRLRRRLNEILAKH  139 (171)
T ss_pred             HHHHHHHcCCCCCEEEccchHHHHcCCCcc-------CCCCH-HHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence            9999999999  799999998876655444       11100 000000             000000000111122222


Q ss_pred             hhH--HHHHHHHhcCCCCCHHHHHHCCCceee
Q psy9494         194 IGT--SRTMDMISLGRHITAREALDWGLCNKM  223 (314)
Q Consensus       194 vG~--~~a~~lll~G~~~sA~eA~~~GLV~~v  223 (314)
                      .|.  ....+++..++.++|+||+++||||+|
T Consensus       140 tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         140 TGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             hCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            232  345566778899999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.30  E-value=4.6e-05  Score=71.33  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCcc
Q psy9494          36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYA  113 (314)
Q Consensus        36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a  113 (314)
                      ..+++++......+.++.+.+. .+-+|-|.-.++++. |.+-.+      ......+...+..  ..+.|+|+.|-|.|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE~------~G~~~~ia~~~~~~s~~~VP~IsVI~G~~  147 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAEE------RGQGEAIARNLMEMSDLKVPIIAIIIGEG  147 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHHh------ccHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4678899999999999888775 577777776555553 332210      0111223232222  78999999999999


Q ss_pred             ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      .|||......||++++.+++.++.                                          ++|.+.+...+...
T Consensus       148 ~gGgA~a~~~~D~v~m~~~a~~~v------------------------------------------~~pe~~a~il~~~~  185 (256)
T PRK12319        148 GSGGALALAVADQVWMLENTMYAV------------------------------------------LSPEGFASILWKDG  185 (256)
T ss_pred             CcHHHHHhhcCCEEEEecCceEEE------------------------------------------cCHHHHHHHHhcCc
Confidence            999888888999999999988751                                          44444333333221


Q ss_pred             hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      --...+.+.+    .+++.++++.|+||+|++.
T Consensus       186 ~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e  214 (256)
T PRK12319        186 SRATEAAELM----KITAGELLEMGVVDKVIPE  214 (256)
T ss_pred             ccHHHHHHHc----CCCHHHHHHCCCCcEecCC
Confidence            1112222332    7799999999999999984

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.23  E-value=3.1e-06  Score=76.28  Aligned_cols=153  Identities=14%  Similarity=0.113  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~  114 (314)
                      ..++..+.+.+...|..++.++..+-|.+.  +.|+...+|               ..+.+.++ ..+.|+++.+.|.|+
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g---------------~~I~d~i~-~~~~~v~t~~~G~aa  101 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG---------------LAIYDTMQ-FIKPDVSTICIGQAA  101 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHH---------------HHHHHHHH-hcCCCEEEEEEeEec
Confidence            456788999999999988876544444443  444322222               12333333 567789999999999


Q ss_pred             cccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494         115 GQGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ  192 (314)
Q Consensus       115 GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~  192 (314)
                      |+|..++++++  .|++.+++.+.+-...-|       +-|              ..-+-....+............+.+
T Consensus       102 S~a~~I~~ag~~~~r~~~p~s~imih~p~~~-------~~G--------------~a~di~~~a~~l~~~~~~~~~~~a~  160 (200)
T PRK00277        102 SMGAFLLAAGAKGKRFALPNSRIMIHQPLGG-------FQG--------------QATDIEIHAREILKLKKRLNEILAE  160 (200)
T ss_pred             cHHHHHHhcCCCCCEEEcCCceEEeccCccc-------ccC--------------ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998754  577777777664333211       000              0000000000000000000122333


Q ss_pred             HhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         193 MIGT--SRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       193 ~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      ..|.  ....+++-.+..++|+||++.||||+|+..
T Consensus       161 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        161 HTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence            3342  445566677889999999999999999875

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.14  E-value=8.5e-06  Score=73.40  Aligned_cols=152  Identities=16%  Similarity=0.178  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+...+...|..++..+..+.|.|.  +.|+..-+|..               +.+.++ ..+.||++.+.|.|++
T Consensus        31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~a---------------I~d~i~-~~~~~V~t~v~G~AaS   94 (197)
T PRK14512         31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFA---------------IFNMIR-FVKPKVFTIGVGLVAS   94 (197)
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHH---------------HHHHHH-hCCCCEEEEEEeeeHh
Confidence            46678889999999888763333444443  44544333322               233333 6788999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      .|.-++++||-  |++.+++.+..-...-++       -|-.- .++..-..+             .-........+...
T Consensus        95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~-------~G~a~-di~~~a~~l-------------~~~~~~i~~~~a~~  153 (197)
T PRK14512         95 AAALIFLAAKKESRFSLPNARYLLHQPLSGF-------KGVAT-DIEIYANEL-------------NKVKSELNDIIAKE  153 (197)
T ss_pred             HHHHHHhcCCcCceeECCCCcEEEEcCcccc-------ccCHH-HHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence            99999999985  899998877533221110       01000 000000000             00000001112222


Q ss_pred             hhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         194 IGT--SRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       194 vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      -|.  .....++-....+||+||+++||||+|++.
T Consensus       154 tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        154 TGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             hCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence            232  335566666778999999999999999976

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.14  E-value=9.2e-05  Score=71.29  Aligned_cols=137  Identities=13%  Similarity=0.089  Sum_probs=92.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494          36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA  113 (314)
Q Consensus        36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a  113 (314)
                      ..+++++.+....+.++.+++. .+-+|-|--.+++++ |.+-.+.      .....+...+.  .....|+|+.|-|.|
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~------G~~~aiar~l~~~a~~~VP~IsVViGeg  203 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL------GQGEAIAVNLREMFSFEVPIICTIIGEG  203 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH------hHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence            4678899999999999988875 567776665555554 3222110      01122222222  178999999999999


Q ss_pred             ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      .|||......||++++.+++.++       +                                   +.|.+.++..+.. 
T Consensus       204 gsGGAlal~~aD~V~m~e~a~~s-------V-----------------------------------isPEg~a~Il~~d-  240 (322)
T CHL00198        204 GSGGALGIGIGDSIMMLEYAVYT-------V-----------------------------------ATPEACAAILWKD-  240 (322)
T ss_pred             cHHHHHhhhcCCeEEEeCCeEEE-------e-----------------------------------cCHHHHHHHHhcc-
Confidence            88887655679999999999876       1                                   5555544444333 


Q ss_pred             hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                        ..+|.+ +...-++||++.++.|+||+|+|.
T Consensus       241 --~~~a~~-aA~~~~ita~dL~~~giiD~ii~E  270 (322)
T CHL00198        241 --SKKSLD-AAEALKITSEDLKVLGIIDEIIPE  270 (322)
T ss_pred             --hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence              233333 344567999999999999999983

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.14  E-value=0.00011  Score=70.75  Aligned_cols=136  Identities=15%  Similarity=0.089  Sum_probs=89.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494          36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA  113 (314)
Q Consensus        36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a  113 (314)
                      .-+++++......+.++.+++- .+-+|-|.-.+++++ |.+-.+.      .....+.+.+.  ....+|+|+.|-|.|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~------G~~~aia~~l~a~s~~~VP~IsVViGeg  200 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEER------GQSEAIARNLREMARLGVPVICTVIGEG  200 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHH------HHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence            4678899999999999888865 577777765555544 2221111      01122223232  178999999999999


Q ss_pred             ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      .|||......||++++.+++.++       +                                   ++|.+.++..+...
T Consensus       201 gsGGAla~~~aD~v~m~~~a~~s-------V-----------------------------------isPEg~a~Il~kd~  238 (316)
T TIGR00513       201 GSGGALAIGVGDKVNMLEYSTYS-------V-----------------------------------ISPEGCAAILWKDA  238 (316)
T ss_pred             ccHHHhhhccCCEEEEecCceEE-------e-----------------------------------cCHHHHHHHhccch
Confidence            88877655579999999999876       1                                   55554444433331


Q ss_pred             hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494         194 IGTSRTMDMISLGRHITAREALDWGLCNKMVN  225 (314)
Q Consensus       194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~  225 (314)
                         .++.+.. .-.++++.++++.|+||+|+|
T Consensus       239 ---~~a~~aa-e~~~~ta~~l~~~G~iD~II~  266 (316)
T TIGR00513       239 ---SKAPKAA-EAMKITAPDLKELGLIDSIIP  266 (316)
T ss_pred             ---hhHHHHH-HHccCCHHHHHHCCCCeEecc
Confidence               2222221 125678999999999999998

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK10949 protease 4; Provisional

Probab=98.11  E-value=1.8e-05  Score=82.39  Aligned_cols=175  Identities=15%  Similarity=0.097  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccccccccc
Q psy9494          43 TLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDL  120 (314)
Q Consensus        43 ~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~l  120 (314)
                      .+.++.++|+++.+|+.|++|||.-.+..   |..+..         .+++.+.+.+  ...|||||. ...+.-+++.|
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~---------~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyL  162 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS---------MQYIGKALREFRDSGKPVYAV-GDSYSQGQYYL  162 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH---------HHHHHHHHHHHHHhCCeEEEE-ecCccchhhhh
Confidence            45689999999999999999999964311   111110         1223333322  568999985 44455779999


Q ss_pred             cccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCchHHHH---------
Q psy9494         121 ALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRR---------  189 (314)
Q Consensus       121 alacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~---------  189 (314)
                      |.+||-+++.+...+++.-....  ++...|.++||-...+++...+-...+  ++..+.    ....-..         
T Consensus       163 ASaAD~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~ep--f~r~~m----S~e~Re~~~~ll~~l~  236 (618)
T PRK10949        163 ASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEP--FIRDDM----SPAAREADSRWIGELW  236 (618)
T ss_pred             hhhCCEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCc--ccCCCC----CHHHHHHHHHHHHHHH
Confidence            99999999999887654332211  256677888888887777655533321  111111    0111111         


Q ss_pred             --HHHHhhHHH----------HHHHHhc---CCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494         190 --LGQMIGTSR----------TMDMISL---GRHITAREALDWGLCNKMVNCGTAVGEAMTR  236 (314)
Q Consensus       190 --l~~~vG~~~----------a~~lll~---G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~  236 (314)
                        +...|...|          +..++-.   -...+|++|++.||||++...+++.+...+.
T Consensus       237 ~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de~~~~l~~~  298 (618)
T PRK10949        237 QNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEIEKALTKA  298 (618)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHHHHHHHHHH
Confidence              111122111          1122211   1236899999999999999877766555443

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.10  E-value=2.2e-06  Score=75.51  Aligned_cols=152  Identities=14%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccE--EEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPL--AILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .+|.++...+.+.|..++..+..+-  |.|.+.|+...+|.               .+.+.++ .++.|+++.+.|.|.+
T Consensus        24 ~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~---------------~i~~~i~-~~~~~v~t~~~G~aaS   87 (182)
T PF00574_consen   24 PIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGL---------------AIYDAIR-SSKAPVTTVVLGLAAS   87 (182)
T ss_dssp             SBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHH---------------HHHHHHH-HSSSEEEEEEEEEEET
T ss_pred             ccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHH---------------HHHHHHH-hcCCCeEEEEeCcccc
Confidence            4688999999998888853333332  23344443333322               2333344 6799999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      .|..++++||.  |++.+++.|.+-+...+.       -| -..+++.-...+.             .-.......+...
T Consensus        88 aa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~-------~g-~~~~l~~~~~~l~-------------~~~~~~~~~~~~~  146 (182)
T PF00574_consen   88 AATLIFLAGDKGKRYASPNSRFMIHQPSTGS-------GG-NASELREQAKELE-------------KLNERIANIYAER  146 (182)
T ss_dssp             HHHHHHHTSSTTTEEE-TT-EEEES-CEEEE-------EE-EHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred             ceehhhhcCCcCceeeeecCEEEeecceeec-------cc-ccchhHHHHHHHH-------------HHHHHHHHHHHHH
Confidence            99999999999  899999999877776551       01 0000000000000             0000011122222


Q ss_pred             hh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         194 IG--TSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       194 vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      .|  .....+++-....++|+||+++||||+|...
T Consensus       147 tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  147 TGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             HTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             hCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence            22  2334455666667899999999999999853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.08  E-value=0.00014  Score=72.08  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=88.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~  114 (314)
                      .+++++.++...+.++.++.. .+-+|-|.-.++++ .|.+-.+.      .....+...+..  ...+|+|+.|-|.+.
T Consensus       200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~------Gqa~aIAr~l~ams~l~VPiISVViGeGg  271 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL------GQGEAIAFNLREMFGLRVPIIATVIGEGG  271 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH------hHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            568899999999999988875 57777766555444 22222110      011222222221  789999999999996


Q ss_pred             cccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHh
Q psy9494         115 GQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI  194 (314)
Q Consensus       115 GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~v  194 (314)
                      |||.....+||++++.+++.++       +                                   +.|.+.++..+....
T Consensus       272 SGGAlalg~aD~VlMle~A~ys-------V-----------------------------------isPEgaAsILwkd~~  309 (431)
T PLN03230        272 SGGALAIGCGNRMLMMENAVYY-------V-----------------------------------ASPEACAAILWKSAA  309 (431)
T ss_pred             cHHHHHhhcCCEEEEecCCEEE-------e-----------------------------------cCHHHHHHHHhcccc
Confidence            6665555578999999998765       1                                   444444444443322


Q ss_pred             hHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         195 GTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       195 G~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      -...|.+    .-.+||.++++.|+||+|++.
T Consensus       310 ~A~eAAe----alkitA~dL~~~GiID~II~E  337 (431)
T PLN03230        310 AAPKAAE----ALRITAAELVKLGVVDEIVPE  337 (431)
T ss_pred             chHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence            2222333    338999999999999999973

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.99  E-value=0.0003  Score=67.81  Aligned_cols=137  Identities=15%  Similarity=0.122  Sum_probs=92.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494          36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA  113 (314)
Q Consensus        36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a  113 (314)
                      .-+++++......+.++.+++- .+.+|-|.-.+++++ |.+-.+-      .....+...+.  .....|+|+.|-|.|
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~~------G~~~aia~~l~~~a~~~VP~IsVIiGeg  200 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEER------GQSEAIARNLREMARLKVPIICTVIGEG  200 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHhc------cHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4578899999999988888765 577777776655554 3322110      01122222232  189999999999999


Q ss_pred             ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      .|||......||++++.+++.++       +                                   ++|.+.++..+.. 
T Consensus       201 ~sGGAla~~~aD~v~m~~~A~~s-------v-----------------------------------isPEg~a~Il~~~-  237 (319)
T PRK05724        201 GSGGALAIGVGDRVLMLEYSTYS-------V-----------------------------------ISPEGCASILWKD-  237 (319)
T ss_pred             cHHHHHHHhccCeeeeecCceEe-------e-----------------------------------cCHHHHHHHHhcC-
Confidence            88887655679999999999875       1                                   5554444443332 


Q ss_pred             hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                        ..++.+..- .-.+++.++++.|+||+|++.
T Consensus       238 --~~~a~~aae-~~~ita~~l~~~g~iD~II~E  267 (319)
T PRK05724        238 --ASKAPEAAE-AMKITAQDLKELGIIDEIIPE  267 (319)
T ss_pred             --chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence              123333322 556899999999999999973

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.89  E-value=0.0001  Score=69.31  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=69.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQ  116 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~Gg  116 (314)
                      +.++.+..+++.++++...++..+-.+ |...|      ++..         ....+.+.+. +.+.|+++.|+.+|.++
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~IdLi-i~TpG------G~v~---------AA~~I~~~l~-~~~~~v~v~VP~~A~SA  132 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPIDLI-IHTPG------GLVD---------AAEQIARALR-EHPAKVTVIVPHYAMSA  132 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCceEEE-EECCC------CcHH---------HHHHHHHHHH-hCCCCEEEEECcccccH
Confidence            578999999999999999887766444 33333      2221         1123444444 67889999999999999


Q ss_pred             cccccccCcEEEEeCCeEeeccccccc
Q psy9494         117 GLDLALWCDLRFVEENVLMGFYNRRFV  143 (314)
Q Consensus       117 G~~lalacD~~ia~~~a~f~~pe~~~G  143 (314)
                      |.-+|++||-+++.+++.+|-....+|
T Consensus       133 GTlIALaADeIvM~p~a~LGpiDPqi~  159 (285)
T PF01972_consen  133 GTLIALAADEIVMGPGAVLGPIDPQIG  159 (285)
T ss_pred             HHHHHHhCCeEEECCCCccCCCCcccc
Confidence            999999999999999999998888887

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.89  E-value=0.00034  Score=73.30  Aligned_cols=137  Identities=12%  Similarity=0.065  Sum_probs=91.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh--cCCCCcEEEEEcCcc
Q psy9494          36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ--KPAKKPIIAAITGYA  113 (314)
Q Consensus        36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~kPvIAav~G~a  113 (314)
                      ..+.+++.+....+.++.++.. .+-+|-|--.+++++ |.+-.+.      .....+...+.  ....+|+|+.|-|.|
T Consensus       220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~------Gq~~aIArnl~amasl~VP~ISVViGeg  291 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL------GQGEAIAHNLRTMFGLKVPIVSIVIGEG  291 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH------hHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4578888899999988888765 577777665554544 2222211      01122222222  178999999999999


Q ss_pred             ccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHH
Q psy9494         114 VGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM  193 (314)
Q Consensus       114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~  193 (314)
                      .|||......||+++|.+++.++       +                                   +.|.+.++..+...
T Consensus       292 gSGGAlA~g~aD~VlMle~A~~s-------V-----------------------------------isPEgaAsILwkd~  329 (762)
T PLN03229        292 GSGGALAIGCANKLLMLENAVFY-------V-----------------------------------ASPEACAAILWKSA  329 (762)
T ss_pred             chHHHHHhhcCCEEEEecCCeEE-------e-----------------------------------cCHHHHHHHHhcCc
Confidence            98888877789999999998765       1                                   44444444333331


Q ss_pred             hhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       194 vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                         .+|.+ +...-.+||++.++.|+||+|+|.
T Consensus       330 ---~~A~e-AAe~lkiTa~dL~~lGiiD~IIpE  358 (762)
T PLN03229        330 ---KAAPK-AAEKLRITAQELCRLQIADGIIPE  358 (762)
T ss_pred             ---ccHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence               22222 344567999999999999999983

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.86  E-value=4.9e-05  Score=68.70  Aligned_cols=149  Identities=12%  Similarity=0.131  Sum_probs=92.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~  114 (314)
                      ..+|.++..++...|-.++.++..+-|.+.  +.|+...+|.               .+.+.++ ..+.||...+.|.|+
T Consensus        37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~---------------aIyd~m~-~~~~~V~Tv~~G~Aa  100 (200)
T CHL00028         37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGL---------------AIYDTMQ-FVKPDVHTICLGLAA  100 (200)
T ss_pred             CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHH---------------HHHHHHH-hcCCCEEEEEEEehH
Confidence            367899999999999998855444444443  4444333321               2333344 678899999999999


Q ss_pred             cccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchH
Q psy9494         115 GQGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVT  186 (314)
Q Consensus       115 GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~  186 (314)
                      +.|.-+++++|  -|++.++++|.+-....|+      .-|              .      ..|+...      .....
T Consensus       101 S~aslIl~aG~kg~R~~~p~s~imiHqp~~~~------~~G--------------~------a~di~~~a~~l~~~~~~~  154 (200)
T CHL00028        101 SMASFILAGGEITKRLAFPHARVMIHQPASSF------YEG--------------Q------ASEFVLEAEELLKLRETI  154 (200)
T ss_pred             HHHHHHHhCCCCCCEEecCCCeEEEecCccCc------CCC--------------C------HHHHHHHHHHHHHHHHHH
Confidence            99999999999  5999999988654432220      000              0      0000000      00000


Q ss_pred             HHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         187 IRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       187 ~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                      ...+.+.-|.  ....+++-....++|+||+++||||+|+.+.
T Consensus       155 ~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        155 TRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             HHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence            1122222332  3344666677789999999999999998753

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.82  E-value=8.9e-05  Score=66.44  Aligned_cols=145  Identities=17%  Similarity=0.155  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+++...|..++.++..+-|.+.  +.|+...+|               ..+.+.++ ..+.||...+.|.|.+
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g---------------~~I~d~l~-~~~~~v~t~~~G~AaS   97 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAG---------------LAIYDTMQ-FIKPDVSTICIGQAAS   97 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHH---------------HHHHHHHH-hcCCCEEEEEEEeecc
Confidence            55677888888888888876555555544  333322111               22333444 4455666777899999


Q ss_pred             ccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchHH
Q psy9494         116 QGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVTI  187 (314)
Q Consensus       116 gG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~~  187 (314)
                      .|..+++++|  .|++.+++.|.+-+..-|.       -|              .      ..|+...      -.....
T Consensus        98 aaslI~~aG~~~~r~~~p~s~imiH~p~~~~-------~G--------------~------a~d~~~~a~~l~~~~~~~~  150 (191)
T TIGR00493        98 MGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA-------QG--------------Q------ASDIEIQANEILRLKGLLN  150 (191)
T ss_pred             HHHHHHhcCCCCcEEecCCceEEEecCcccc-------cC--------------C------cchhHHHHHHHHHHHHHHH
Confidence            9998888766  5999999988754443220       00              0      0000000      000011


Q ss_pred             HHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494         188 RRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVN  225 (314)
Q Consensus       188 ~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~  225 (314)
                      ..+.+.-|.  ....+++-.+..+||+||+++||||+++.
T Consensus       151 ~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       151 DILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             HHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence            123333332  44556677888999999999999999874

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.69  E-value=0.0002  Score=64.49  Aligned_cols=147  Identities=15%  Similarity=0.178  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .+|.++..++...|..++.+...+-|.+.  +.|+..-+|.               .+.+.++ ..+-||...+.|.|++
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~---------------aIyd~m~-~~~~~V~t~~~G~AaS   96 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGL---------------GIFDTMQ-HVKPDVHTVCVGLAAS   96 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHH---------------HHHHHHH-hcCCCEEEEEEEEehh
Confidence            57899999999999999865444444443  4444433332               2233333 5677889999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchHH
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVTI  187 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~~  187 (314)
                      .|.-+++++|-  |++.+++++..-...-|       .-|              .      ..|+.+-      ......
T Consensus        97 ~AslIl~aG~~~~R~~~p~a~iMIHqP~~~-------~~G--------------~------a~di~~~a~~l~~~~~~~~  149 (196)
T PRK12551         97 MGAFLLCAGAKGKRSSLQHSRIMIHQPLGG-------ARG--------------Q------ASDIRIQADEILFLKERLN  149 (196)
T ss_pred             HHHHHHhCCCCCceecCCCCEEEEecCCcc-------cCC--------------C------cchHHHHHHHHHHHHHHHH
Confidence            99999999985  88889888764443211       000              0      0000000      000011


Q ss_pred             HHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         188 RRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       188 ~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                      ..+.+..|.  ....+++-.-..+||+||+++||||+|++..
T Consensus       150 ~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        150 TELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence            122233332  2344556666789999999999999999763

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.65  E-value=0.00026  Score=64.90  Aligned_cols=147  Identities=14%  Similarity=0.109  Sum_probs=88.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEE--EcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAIL--YGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~  114 (314)
                      ..+|..+.+++...|..++..+.-+-|.+  -+.|+...+|.               .+.+.++ ..+-||...+.|.|+
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGl---------------aIyd~m~-~~~~~V~tv~~G~AA  124 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGL---------------GIYDTMQ-FISSDVATICTGMAA  124 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHH---------------HHHHHHH-hcCCCEEEEEEEEeh
Confidence            35678888888887777764332233333  34454444432               1233333 677789999999999


Q ss_pred             cccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchH
Q psy9494         115 GQGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVT  186 (314)
Q Consensus       115 GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~  186 (314)
                      +.|.-+++++|.  |++.+++.+.+-...-|.       -|                    ...|+.+-      .....
T Consensus       125 S~AslIl~aG~~gkR~~~pna~iMiHqP~~~~-------~G--------------------~a~di~i~a~el~~~~~~i  177 (221)
T PRK14514        125 SMASVLLVAGTKGKRSALPHSRVMIHQPLGGA-------QG--------------------QASDIEITAREIQKLKKEL  177 (221)
T ss_pred             hHHHHHHhcCCCCceeeCCCCEEEeccCCccc-------CC--------------------CcchHHHHHHHHHHHHHHH
Confidence            999999999996  889999887644332220       00                    00000000      00001


Q ss_pred             HHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         187 IRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       187 ~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      ...+.+..|.  ....+.+-....++|+||+++||||+|+..
T Consensus       178 ~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        178 YTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence            1122233342  334456667778999999999999999863

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.65  E-value=0.00092  Score=63.80  Aligned_cols=162  Identities=15%  Similarity=0.156  Sum_probs=100.6

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-
Q psy9494          22 ILNITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-   99 (314)
Q Consensus        22 ~~~v~~itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-   99 (314)
                      ++.-..|.-|.+. ...+++...-+.+..+++.+.+. .+-+|.+...|++     .+.+-.. +-... ......+.+ 
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgGa-----rmqEgi~-sL~~~-ak~~~a~~~~  190 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGGA-----RMQEGLL-SLMQM-AKTSAALKRL  190 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----chhhhhh-HHHhH-HHHHHHHHHH
Confidence            3433333334443 56789999999999999998876 5888888865533     2322000 00000 111111111 


Q ss_pred             -CCCCcEEEEEcCcccccccc-ccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccccc
Q psy9494         100 -PAKKPIIAAITGYAVGQGLD-LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRD  177 (314)
Q Consensus       100 -~~~kPvIAav~G~a~GgG~~-lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                       ....|.|+.+.|+|+||+.. .++.+|++||.++|.+++.-.++                                   
T Consensus       191 ~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprv-----------------------------------  235 (292)
T PRK05654        191 SEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRV-----------------------------------  235 (292)
T ss_pred             HcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHH-----------------------------------
Confidence             56899999999999999654 57789999999998766322211                                   


Q ss_pred             ccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         178 LAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       178 ~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                  +...++..    +  .-+.-+++-+.+.|+||.|+++.++.....++.+.+...+
T Consensus       236 ------------ie~~~~e~----l--pe~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~  284 (292)
T PRK05654        236 ------------IEQTVREK----L--PEGFQRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP  284 (292)
T ss_pred             ------------HHhhhhhh----h--hhhhcCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence                        11111111    0  0012256777789999999999988888877777665543

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.61  E-value=0.0015  Score=62.08  Aligned_cols=157  Identities=17%  Similarity=0.184  Sum_probs=98.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK  102 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~  102 (314)
                      |+.+..|..-..-+++....+.+..+++.+.+. .+.+|.+...|++     -+.|-.. .-... ......+.+  ...
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~~-sL~~~-ak~~~~~~~~~~~~  193 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEALL-SLMQM-AKTSAALAKMSERG  193 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccchh-HHHhH-HHHHHHHHHHHcCC
Confidence            444444444456789999999999999998765 5888888876544     2222100 00000 111111111  568


Q ss_pred             CcEEEEEcCcccccccc-ccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494         103 KPIIAAITGYAVGQGLD-LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP  181 (314)
Q Consensus       103 kPvIAav~G~a~GgG~~-lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                      .|.|+.+.|+|+||+.. .++.+|++||.++|.+++.-.+                                        
T Consensus       194 vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr----------------------------------------  233 (285)
T TIGR00515       194 LPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR----------------------------------------  233 (285)
T ss_pred             CCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH----------------------------------------
Confidence            99999999999999644 6679999999999877632111                                        


Q ss_pred             CCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         182 TCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       182 p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                             .+.+.+|..      +.-+.-+|+-+.+.|+||.++++.++.+...++...+..
T Consensus       234 -------Vie~ti~e~------lpe~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~  281 (285)
T TIGR00515       234 -------VIEQTVREK------LPEGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQN  281 (285)
T ss_pred             -------HHHHHhcCc------cchhcCCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence                   111112210      011122556677889999999998888877777765543

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.54  E-value=0.0042  Score=57.63  Aligned_cols=166  Identities=14%  Similarity=0.116  Sum_probs=94.1

Q ss_pred             CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh-hhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHH---H-
Q psy9494          23 LNITLISLNRPDKINAINLKTLDALQENIKRF-EDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREF---L-   97 (314)
Q Consensus        23 ~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~-~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~---~-   97 (314)
                      +.-..|.=|+|..  .++.+-.......+... +++.++.+|.|.-.+++... ..=++..      ......++   + 
T Consensus        31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g-~~aE~~G------~~~a~A~l~~a~a  101 (238)
T TIGR03134        31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYG-RREELLG------INQALAHLAKALA  101 (238)
T ss_pred             CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCC-HHHHHHH------HHHHHHHHHHHHH
Confidence            3333333455553  78877777777778775 45577888877765433221 1111000      11111111   1 


Q ss_pred             hc-CCCCcEEEEEcCcccccccc-ccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494          98 QK-PAKKPIIAAITGYAVGQGLD-LALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS  175 (314)
Q Consensus        98 ~~-~~~kPvIAav~G~a~GgG~~-lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      .. ..+.|+|+.|-|.++|||+. +.+.+|.++|-+++.++       .                               
T Consensus       102 ~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------v-------------------------------  143 (238)
T TIGR03134       102 LARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------V-------------------------------  143 (238)
T ss_pred             HhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------e-------------------------------
Confidence            11 67899999999999998865 44458999998888765       1                               


Q ss_pred             ccccCCCCchHHHHHHHHhhHHHHHHHHhcC--CCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLG--RHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G--~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                          ++|...+. .+-+-.  .++.++.-.-  -..+...+.+.|+||+++++.+-..-+.++++.++.
T Consensus       144 ----m~~e~aa~-I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~~~~~~~  205 (238)
T TIGR03134       144 ----MDLESMAR-VTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHALLDVADADAPAAQLAAVLAA  205 (238)
T ss_pred             ----cCHHHHHH-HHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCCcccHHHHHHHHHHh
Confidence                34333222 222212  2233332221  235677899999999999975543333455554443

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.53  E-value=0.00055  Score=61.94  Aligned_cols=148  Identities=14%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEE--EEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLA--ILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~  114 (314)
                      ..++.++-+.+...|-.++.++.-+-|  -|-+.|+...+|.               .+.+.++ ..+-||...+.|.|+
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~Gl---------------aIyd~m~-~~~~~V~Ti~~G~Aa   97 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGL---------------AIYDTMR-YIKAPVSTICVGIAM   97 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHH---------------HHHHHHH-hcCCCEEEEEEeeeh
Confidence            367888999998888888764333323  2334444333321               2333333 677789999999999


Q ss_pred             cccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC------CCchH
Q psy9494         115 GQGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP------TCDVT  186 (314)
Q Consensus       115 GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~g~  186 (314)
                      +.|.-+++++|-  |++.++|++-+-....|.       -|                   + ..|+.+-      .....
T Consensus        98 S~As~il~aG~kgkR~~~pna~iMIHqp~~~~-------~G-------------------~-a~di~~~a~el~~~~~~l  150 (201)
T PRK14513         98 SMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF-------RG-------------------N-TPDLEVQAKEVLFLRDTL  150 (201)
T ss_pred             hhHHHHHhcCCCCcEEecCCeEEEEecCCCCC-------CC-------------------C-HHHHHHHHHHHHHHHHHH
Confidence            999999999996  899999987644433220       00                   0 0000000      00001


Q ss_pred             HHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         187 IRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       187 ~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                      ...+.+..|.  ..-.+++-....+||+||+++||||+|+++.
T Consensus       151 ~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        151 VDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             HHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence            1122233332  3344556666789999999999999999764

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0015  Score=65.01  Aligned_cols=156  Identities=15%  Similarity=0.213  Sum_probs=104.6

Q ss_pred             EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEE-cCCCCccccCCcccccCCCCchhHHHHHHHHhc
Q psy9494          21 KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILY-GQEGNFCSGFDLHELDENPDTKLFDDFREFLQK   99 (314)
Q Consensus        21 ~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   99 (314)
                      -++.|..+.++     +.+++.+.+.+.++++.++++.. -++|+. ..++.+                 .+.+.+..+.
T Consensus        24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl-----------------~~sm~~iv~~   80 (436)
T COG1030          24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL-----------------LDSMRQIVRA   80 (436)
T ss_pred             cCCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch-----------------HHHHHHHHHH
Confidence            35578888875     48899999999999999998753 344443 333222                 2233333333


Q ss_pred             --CCCCcEEEEEc---CccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccc
Q psy9494         100 --PAKKPIIAAIT---GYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNL  174 (314)
Q Consensus       100 --~~~kPvIAav~---G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  174 (314)
                        +.+.||+..|.   +.|..+|..++++||+..+++.+.+|-...-.+-                      +-+     
T Consensus        81 i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~----------------------g~~-----  133 (436)
T COG1030          81 ILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGG----------------------GTS-----  133 (436)
T ss_pred             HHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCC----------------------CCC-----
Confidence              89999888883   4699999999999999999999988855544330                      000     


Q ss_pred             cccccCCCCchHHHHHHHHhh--------HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHH
Q psy9494         175 SRDLAIPTCDVTIRRLGQMIG--------TSRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVG  231 (314)
Q Consensus       175 ~~~~~~~p~~g~~~~l~~~vG--------~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~  231 (314)
                           ..+..........+.+        ...|.+++.....++++||++.|++|-+..+ .|++.
T Consensus       134 -----~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~  194 (436)
T COG1030         134 -----AKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLK  194 (436)
T ss_pred             -----ccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHH
Confidence                 1111112222233222        2347789999999999999999999987765 34433

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.47  E-value=0.0017  Score=61.38  Aligned_cols=107  Identities=16%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhC----CCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDD----TESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKP  100 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d----~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  100 (314)
                      |..+..+.--..-++....-..+..+++.+.+|    ..+.+|.+.-.|+.     .+.+-.. .-....+-+......+
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqEg~~-~L~~~a~i~~~~~~ls  134 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQEANA-GLIAIAEIMRAILDAR  134 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----ChhhhHH-HHHHHHHHHHHHHHHh
Confidence            555555544455678888889999999998762    23457777654433     3332110 0000111122222223


Q ss_pred             CCCcEEEEEcCc--cccccccccccCcEEEEeCCeEeec
Q psy9494         101 AKKPIIAAITGY--AVGQGLDLALWCDLRFVEENVLMGF  137 (314)
Q Consensus       101 ~~kPvIAav~G~--a~GgG~~lalacD~~ia~~~a~f~~  137 (314)
                      -..|+|+.|.|+  |+||+...+..||++|+++++++++
T Consensus       135 ~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~  173 (274)
T TIGR03133       135 AAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL  173 (274)
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence            339999999999  8999999999999999999987653

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.24  E-value=0.0068  Score=57.92  Aligned_cols=106  Identities=15%  Similarity=0.091  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH--HHHHHhcCCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD--FREFLQKPAK  102 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~--~~~~~~~~~~  102 (314)
                      |+...++--=..-++....-+.+..+++.+.+. .+-+|++...|+     +.+.+-... -......  ....+...-.
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~s-L~qmak~saa~~~~~~~~~  207 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSLS-LMQMAKISSALYDYQSNKK  207 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccchh-hhhhHHHHHHHHHHHHcCC
Confidence            555555544456788888899999999998876 477888886553     334331100 0011111  1112222567


Q ss_pred             CcEEEEEcCccccccccc-cccCcEEEEeCCeEeec
Q psy9494         103 KPIIAAITGYAVGQGLDL-ALWCDLRFVEENVLMGF  137 (314)
Q Consensus       103 kPvIAav~G~a~GgG~~l-alacD~~ia~~~a~f~~  137 (314)
                      .|.|+.+.|+|.||+... ++.||++|+.++|.+++
T Consensus       208 vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~Igf  243 (296)
T CHL00174        208 LFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAF  243 (296)
T ss_pred             CCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEe
Confidence            999999999999998765 77799999988887663

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.23  E-value=0.0077  Score=57.71  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC----CccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDT----ESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKP  100 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~----~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  100 (314)
                      |..+..+.-=..-++.......+..+++.+.++.    .+.+|.|.-.|+.     .+.+-.. .-....+-+......+
T Consensus        70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~~-~L~~~a~i~~~~~~ls  143 (301)
T PRK07189         70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEANA-GLAAIAEIMRAIVDLR  143 (301)
T ss_pred             EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchHH-HHHHHHHHHHHHHHHh
Confidence            5555555555667888888999999999998875    3677877765433     3332110 0000111122222223


Q ss_pred             CCCcEEEEEcCc--cccccccccccCcEEEEeCCeEeec
Q psy9494         101 AKKPIIAAITGY--AVGQGLDLALWCDLRFVEENVLMGF  137 (314)
Q Consensus       101 ~~kPvIAav~G~--a~GgG~~lalacD~~ia~~~a~f~~  137 (314)
                      -.+|+|+.|.|+  |+||+...+.+||++|+++++.+++
T Consensus       144 ~~VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl  182 (301)
T PRK07189        144 AAVPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL  182 (301)
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence            339999999999  9999999999999999999987653

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=97.19  E-value=0.0067  Score=57.08  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=102.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK  102 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~  102 (314)
                      ++...++-.=-..++..-.=+.+..+++.+-++ .+.+|+++.+|++     -+.|-.- +--+ .......+.+  ...
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGA-----RMQEg~l-SLMQ-MaktsaAl~~l~ea~  195 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGA-----RMQEGIL-SLMQ-MAKTSAALKRLSEAG  195 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcch-----hHhHHHH-HHHH-HHHHHHHHHHHHhcC
Confidence            555555544344577777788899999998877 4899999987632     2221000 0000 0001111111  778


Q ss_pred             CcEEEEEcCcccccc-ccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494         103 KPIIAAITGYAVGQG-LDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP  181 (314)
Q Consensus       103 kPvIAav~G~a~GgG-~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                      .|.|+.+.+++.||= .++|+..|+.||.+.|.+||.-.++=                       -++.+++      +|
T Consensus       196 lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-----------------------EQTire~------LP  246 (294)
T COG0777         196 LPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-----------------------EQTIREK------LP  246 (294)
T ss_pred             CceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-----------------------hhhhccc------CC
Confidence            999999999999884 56999999999999999887655532                       1111122      33


Q ss_pred             CCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         182 TCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       182 p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                      .+.                        =+++-.++-|+||.+|+..++......+...+...+
T Consensus       247 egf------------------------Q~aEfLlehG~iD~iv~R~elr~tla~ll~~~~~~~  285 (294)
T COG0777         247 EGF------------------------QTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQP  285 (294)
T ss_pred             cch------------------------hhHHHHHHcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence            221                        146667899999999999888777777776665543

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.07  E-value=0.012  Score=60.29  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             EcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEE
Q psy9494          30 LNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPII  106 (314)
Q Consensus        30 lnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvI  106 (314)
                      =|+|. ...+++.+..+...+.++.+.+. .+-+|.|.-.++ |..|.+-..      ........+.+..  ....|.|
T Consensus       321 And~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~------~g~~~~~a~~~~a~~~~~vP~i  392 (512)
T TIGR01117       321 ANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY------GGIIRHGAKVLYAYSEATVPKV  392 (512)
T ss_pred             EeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH------HHHHHHHHHHHHHHHhCCCCEE
Confidence            34443 44579999999999999988764 678888776554 444432110      0011122222222  7899999


Q ss_pred             EEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494         107 AAITGYAVGQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       107 Aav~G~a~GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      +.|.|.++|||+..+.    .+|+++|.+++.++
T Consensus       393 svi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~  426 (512)
T TIGR01117       393 TIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA  426 (512)
T ss_pred             EEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe
Confidence            9999999988765443    39999999998876

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.05  E-value=0.0027  Score=57.38  Aligned_cols=84  Identities=18%  Similarity=0.207  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy9494          40 NLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQG  117 (314)
Q Consensus        40 ~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG  117 (314)
                      +..+...+..-+-.++.++..+-|.|.  +.|+...+|.-+               .+.++ ..+.||...+.|.|.+.|
T Consensus        37 ~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AI---------------ydtm~-~ik~~V~ti~~G~AaSmg  100 (200)
T COG0740          37 EDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAI---------------YDTMQ-FIKPPVSTICMGQAASMG  100 (200)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHH---------------HHHHH-hcCCCeEEEEecHHHhHH
Confidence            334555555555555554444444443  666666666433               22233 688999999999999999


Q ss_pred             ccccccCcEE--EEeCCeEeeccc
Q psy9494         118 LDLALWCDLR--FVEENVLMGFYN  139 (314)
Q Consensus       118 ~~lalacD~~--ia~~~a~f~~pe  139 (314)
                      .-|++++|-.  ++.++|++-.-.
T Consensus       101 s~l~~aG~~g~r~~lPnsrimIHq  124 (200)
T COG0740         101 SVLLMAGDKGKRFALPNARIMIHQ  124 (200)
T ss_pred             HHHHhcCCCCCceeCCCceEEEec
Confidence            9999999985  888888765433

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.89  E-value=0.023  Score=52.21  Aligned_cols=96  Identities=10%  Similarity=0.056  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEE--EcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAIL--YGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      ..+.++.+.+...|-.++.++..+-|-+  -+.|+...+|-=+....+      .-.+.+.++ ..+-||...+-|.|++
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~------glaIyD~m~-~ik~~V~Tv~~G~AaS  120 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETE------AFAICDTMR-YIKPPVHTICIGQAMG  120 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccccc------HHHHHHHHH-hcCCCeEEEEEeehhh
Confidence            4455588888888888876543333333  355666555511111100      112333333 5666788999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeecccc
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNR  140 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~  140 (314)
                      .+.-+++++|-  |++-+++++-+-..
T Consensus       121 ~AslIl~aG~kg~R~alpns~iMIHqP  147 (222)
T PRK12552        121 TAAMILSAGTKGQRASLPHATIVLHQP  147 (222)
T ss_pred             HHHHHHhCCCCCceecCCCcEEEeccC
Confidence            99999999995  88989988764443

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.87  E-value=0.0098  Score=60.68  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=67.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |.++..+.--...++.......+..+++.+.++ .+.+|.|.-.|+.+  + ++.+-.... .....-+.......-..|
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~dsgGa~--~-r~~eg~~~l-~~~g~i~~~~~~~~~~iP  133 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVDSGGAF--L-RMQEGVESL-MGMGRIFRAIARLSGGIP  133 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEEESSBC--G-GGGGHHHHH-HHHHHHHHHHHHHHTTS-
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEeccccccc--c-ccchhhhhh-hhhHHHHHHHHHHhcCCC
Confidence            343444444456789999999999999999887 46667666433221  1 333221100 000111111111133999


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCC-eEee
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEEN-VLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~-a~f~  136 (314)
                      +|+++.|+|.|||..++..||++|+.++ +.++
T Consensus       134 ~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~  166 (493)
T PF01039_consen  134 QISVVTGPCTGGGAYLAALSDFVIMVKGTARIF  166 (493)
T ss_dssp             EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEE
T ss_pred             eEEEEccccccchhhcccccCccccCccceEEE
Confidence            9999999999999999999999999997 7654

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.86  E-value=0.017  Score=59.26  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=65.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+.-=+.-+++......+..+++.+.++. +-+|.|.-.|+.     .+.+-... -......+.......-..|
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~~~-l~~~~~~~~~~~~~s~~iP  156 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAVDA-LKGYGDIFYRNTIASGVVP  156 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccchh-hhhHHHHHHHHHHHcCCCc
Confidence            4444444333567888888999999999998764 677777754433     33221110 0011111212122244689


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCCe
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEENV  133 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~a  133 (314)
                      .|++|.|+|.||+......||++|+.+++
T Consensus       157 ~Isvv~G~~~GG~a~~~al~D~vim~~~~  185 (512)
T TIGR01117       157 QISAIMGPCAGGAVYSPALTDFIYMVDNT  185 (512)
T ss_pred             EEEEEecCCCcHHHHHHHhcCceEEeccc
Confidence            99999999999998887899999999964

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.88  E-value=0.12  Score=53.69  Aligned_cols=107  Identities=12%  Similarity=0.043  Sum_probs=68.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKK  103 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~k  103 (314)
                      |+.+.-+.-=+..+++....+.+..+++.+.+. .+.+|.|.-.|+++-.+ ....+..  ......-+...... ....
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~~--~~~~g~if~~~~~ls~~~V  206 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFPD--RDHFGRIFYNQARMSSAGI  206 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccch--HhHHHHHHHHHHHHhCCCC
Confidence            444444433366899999999999999998876 57788877655443211 0000000  00011111122221 4679


Q ss_pred             cEEEEEcCccccccccccccCcEEEEeCC-eEe
Q psy9494         104 PIIAAITGYAVGQGLDLALWCDLRFVEEN-VLM  135 (314)
Q Consensus       104 PvIAav~G~a~GgG~~lalacD~~ia~~~-a~f  135 (314)
                      |.|++|.|+|.|||......||++|+++. +.+
T Consensus       207 P~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i  239 (569)
T PLN02820        207 PQIALVLGSCTAGGAYVPAMADESVIVKGNGTI  239 (569)
T ss_pred             CEEEEEeCCCChHHHHHHHhCCceEEecCCcEE
Confidence            99999999999999999999999999875 544

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=94.98  E-value=0.031  Score=53.09  Aligned_cols=81  Identities=20%  Similarity=0.177  Sum_probs=62.9

Q ss_pred             CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccccccc
Q psy9494         100 PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLA  179 (314)
Q Consensus       100 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (314)
                      +++.|+|+.|=|-.-+||.--...+|.+.+-++++++      .                                    
T Consensus       186 ~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~yS------V------------------------------------  223 (317)
T COG0825         186 RLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYS------V------------------------------------  223 (317)
T ss_pred             CCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceee------e------------------------------------
Confidence            8999999999999888887666778999999998876      1                                    


Q ss_pred             CCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         180 IPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       180 ~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      ++|.+.++.++-.   ..+|.+. ...-+++|++.+++|+||.|+|.
T Consensus       224 isPEG~AsILWkD---~~ka~eA-Ae~mkita~dLk~lgiID~II~E  266 (317)
T COG0825         224 ISPEGCASILWKD---ASKAKEA-AEAMKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             cChhhhhhhhhcC---hhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence            6776666555443   2444443 34457999999999999999984

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=94.71  E-value=0.3  Score=50.17  Aligned_cols=102  Identities=13%  Similarity=0.067  Sum_probs=63.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      +....-+.+-+.-++..-....+..+.+.+.++. .-+|.|.-     |.|+.+.+-...... ...-+.......--.|
T Consensus        93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~d-----sgGari~~~v~~l~g-~g~iF~~~a~~Sg~IP  165 (526)
T COG4799          93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENG-LPVIGLND-----SGGARIQEGVPSLAG-YGRIFYRNARASGVIP  165 (526)
T ss_pred             EEEEEecCceecccccccccchHHHHHHHHHHcC-CCEEEEEc-----ccccccccCcccccc-chHHHHHHHHhccCCC
Confidence            3333334555777888878888888888888764 44454443     223333321110000 0111111112233499


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCCe
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEENV  133 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~a  133 (314)
                      .|++|.|.|+|||..+...||++|+.++.
T Consensus       166 qIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         166 QISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             EEEEEEecCcccccccccccceEEEEcCC
Confidence            99999999999999999999999999983

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=92.16  E-value=4  Score=42.64  Aligned_cols=92  Identities=20%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~  114 (314)
                      -+++.+..+...+.++.+.. -.+-+|-|.-.++ |..|.+-..-      .......+++..  ....|.|+.|-|.++
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~~------G~~~~~a~l~~A~a~~~VP~isvi~g~a~  451 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEAS------GIAKAGAKMVMAVACAKVPKITIIVGGSF  451 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHHh------hHHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence            46888888888888887775 4688887775543 4444333220      012222333332  789999999999999


Q ss_pred             cccccccc----cCcEEEEeCCeEee
Q psy9494         115 GQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       115 GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      |+|+..+.    ..|+++|.++|.++
T Consensus       452 G~g~~aM~g~~~~~d~~~awp~A~i~  477 (569)
T PLN02820        452 GAGNYGMCGRAYSPNFLFMWPNARIG  477 (569)
T ss_pred             hHHHHHhcCcCCCCCEEEECCCCeEE
Confidence            98765543    67888888888765

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=92.08  E-value=0.56  Score=47.94  Aligned_cols=101  Identities=20%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             EEEcCCCCC-CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCc
Q psy9494          28 ISLNRPDKI-NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKP  104 (314)
Q Consensus        28 itlnrp~~~-Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kP  104 (314)
                      |.=|+|... -+++.+..+...+.++.++. -.+-+|.|.-.. .|..|.+-..      ........+.+..  .++.|
T Consensus       298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dtp-Gf~~g~~~E~------~g~~~~ga~~~~a~~~~~vP  369 (493)
T PF01039_consen  298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDTP-GFMPGPEAER------AGIIRAGARLLYALAEATVP  369 (493)
T ss_dssp             EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEEC-EB--SHHHHH------TTHHHHHHHHHHHHHHH-S-
T ss_pred             EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeecc-cccccchhhh------cchHHHHHHHHHHHHcCCCC
Confidence            334666432 26999999999999988887 468888887543 2333322111      0011112222222  78999


Q ss_pred             EEEEEcCccccccccccccC----cEEEEeCCeEee
Q psy9494         105 IIAAITGYAVGQGLDLALWC----DLRFVEENVLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalac----D~~ia~~~a~f~  136 (314)
                      +|..|-|.+.|||+......    |+++|.+++.++
T Consensus       370 ~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~  405 (493)
T PF01039_consen  370 KITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG  405 (493)
T ss_dssp             EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE
T ss_pred             EEEEEeCCccCcchhhhcccccchhhhhhhhcceee
Confidence            99999999999887655555    899988888776

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=81.84  E-value=24  Score=36.64  Aligned_cols=101  Identities=22%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCc
Q psy9494          28 ISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKP  104 (314)
Q Consensus        28 itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kP  104 (314)
                      |.=|.|. ..-+|+.+....-.+.+ ++.+-.++-.|.|.-.. .|.-|-|-..-.      ..+.-..++..  ...+|
T Consensus       328 iIANqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~p-GFm~G~~~E~~g------iik~Gakl~~A~aeatVP  399 (526)
T COG4799         328 IIANQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDTP-GFMPGTDQEYGG------IIKHGAKLLYAVAEATVP  399 (526)
T ss_pred             EEecCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCCC-CCCCChhHHhCh------HHHhhhHHHhhHhhccCC
Confidence            3346654 45688988888888888 55555578888777543 577776543211      11111112222  78899


Q ss_pred             EEEEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494         105 IIAAITGYAVGQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      .|..|-|-++|||+..+.    .+|+.+|.+++.++
T Consensus       400 kitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia  435 (526)
T COG4799         400 KITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA  435 (526)
T ss_pred             eEEEEecccccceeeeecCccCCCceeEecCcceee
Confidence            999999999999986544    35555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		7e-29
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		1e-25
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		5e-15
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		6e-15
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		6e-15
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		6e-15
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		9e-15
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-14
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		2e-14
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		5e-14
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		1e-13
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		1e-13
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-13
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		2e-13
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-12
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		6e-12
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		1e-11
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		1e-11
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-11
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-11
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		2e-11
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-11
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		5e-11
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		5e-11
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		1e-10
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		2e-10
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		2e-09
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		3e-09
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-09
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		4e-09
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		4e-09
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		4e-09
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		5e-09
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		6e-09
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		1e-08
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-08
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		9e-08
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		2e-07
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-07
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-07
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		2e-07
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-07
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		6e-07
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		7e-07
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		1e-06
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		1e-06
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		1e-06
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		1e-06
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-06
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		2e-06
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-06
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-06
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		6e-06
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		1e-05
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		2e-05
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		3e-05
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		4e-05
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		8e-05
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-04
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-04
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-04
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-04
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		1e-04
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		1e-04
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		1e-04
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		1e-04
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		1e-04
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-04
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-04
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-04
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-04
3njb_A	333	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-04
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-04
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		4e-04
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		5e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		7e-04
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		7e-04

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 42/253 (16%)
Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           +V  +K   +T + LNRP   NA++  T  AL      F+ D E+ +A+L+G  G FC+G
Sbjct: 12  AVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAG 71
Query: 76  FDLHELDENPDTKLFDDFREFLQKPAK----KPIIAAITGYAVGQGLDLALWCDLRFVEE 131
            DL  +  +   +L       +  P++    KP+IAAI+G+AV  G++LALWCDLR VEE
Sbjct: 72  ADLKAMGTDRGNELHPHGPGPM-GPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEE 130
Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
           + ++G + RR+                                     +P  D    RL 
Sbjct: 131 DAVLGVFCRRW------------------------------------GVPLIDGGTIRLP 154
Query: 192 QMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML-AD 250
           ++IG SR MD+I  GR + A EALD GL N++V  G A   A T A +++   Q  + AD
Sbjct: 155 RLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRAD 214
Query: 251 RATVLSECETCRE 263
           R + +++     E
Sbjct: 215 RDSAIAQWGMAEE 227

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 96/209 (45%), Gaps = 41/209 (19%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +T + +NRP   NA+N  T  AL      F+ D  + +A+L G  G FC+G DL      
Sbjct: 18  VTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFCAGADLKAFG-T 76
Query: 85  PDTKLFDDFREFLQKPAK----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
            +             P++    KP+IAA++GYAV  GL+LALWCDLR  E++ + G + R
Sbjct: 77  AEANAVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLRVAEQDAVFGVFCR 136
Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
           R+                                     +P  D    RL ++IG SR M
Sbjct: 137 RW------------------------------------GVPLIDGGTVRLPRLIGHSRAM 160
Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTA 229
           DMI  GR + A EAL  GL N++V  G A
Sbjct: 161 DMILTGRAVQADEALAIGLANRVVPNGQA 189

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 47/233 (20%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ LI LNRP  +NA+    ++ L + ++ FE+D      +L G E  F +G D+ E+  
Sbjct: 14  SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ- 72
Query: 84  NPDTKLFDD--FREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
               + F D    +FL         KKP+IAA+ GYA+G G +LA+ CD+ +  E    G
Sbjct: 73  ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG 129
Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                     + LL +                           IP    T +RL + +G 
Sbjct: 130 --------QPEILLGT---------------------------IPGAGGT-QRLTRAVGK 153
Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           S  M+M+  G  I+A++A   GL +K+    T V EA+  A +++  S+ ++A
Sbjct: 154 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 206

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 47/233 (20%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ LI LNRP  +NA+    ++ L + ++ FE+D      +L G E  F +G D+ E+  
Sbjct: 16  SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ- 74
Query: 84  NPDTKLFDD--FREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
               + F D    +FL         KKP+IAA+ GYA+G G +LA+ CD+ +  E    G
Sbjct: 75  ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG 131
Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                     + LL +                           IP    T +RL + +G 
Sbjct: 132 --------QPEILLGT---------------------------IPGAGGT-QRLTRAVGK 155
Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           S  M+M+  G  I+A++A   GL +K+    T V EA+  A +++  S+ ++A
Sbjct: 156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 208

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 47/233 (20%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ LI LNRP  +NA+    ++ L + ++ FE+D      +L G E  F +G D+ E+  
Sbjct: 17  SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ- 75
Query: 84  NPDTKLFDD--FREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
               + F D    +FL         KKP+IAA+ GYA+G G +LA+ CD+ +  E    G
Sbjct: 76  ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG 132
Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                     + LL +                           IP    T +RL + +G 
Sbjct: 133 --------QPEILLGT---------------------------IPGAGGT-QRLTRAVGK 156
Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           S  M+M+  G  I+A++A   GL +K+    T V EA+  A +++  S+ ++A
Sbjct: 157 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 209

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 42/224 (18%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-D 82
            + +++LNRP+K+NAI  + LDAL   +K  E+D E    +L G    F +G DL E  D
Sbjct: 9   GVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGD 68
Query: 83  ENPD----TKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
             PD     + ++   E L    +KP++ A+ G A G G+ LALW DLR           
Sbjct: 69  RKPDYEAHLRRYNRVVEALSG-LEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTA 127
Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
             R   + DS LS         +PR                             ++G ++
Sbjct: 128 FVRIGLVPDSGLS-------FLLPR-----------------------------LVGLAK 151
Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
             +++ L   ++A EAL  GL +++V     + EA++ A ++++
Sbjct: 152 AQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQ 195

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 59/250 (23%)
Query: 9   AMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDA-LQENIKRFEDDTESPLAILYG 67
           +M    +   ++ +  + LI L+RPD +NA+N +TL+A + +  + F+ D E    ++ G
Sbjct: 4   SMTTYTTIATSRPVAGVGLIRLDRPDALNALN-QTLEAEVLDAARDFDADLEIGAIVVTG 62
Query: 68  QEGNFCSGFDLHEL-----DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLAL 122
            E  F +G D+ E+      +  +  L   +    Q   +KPI+AA+ GYA+G G +LA+
Sbjct: 63  SERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQ--VRKPIVAAVAGYALGGGCELAM 120
Query: 123 WCDL-------RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS 175
            CDL       RF +  + +G                                       
Sbjct: 121 LCDLVIAADTARFGQPEITLGI-------------------------------------- 142
Query: 176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMT 235
               +P    T +RL + +G ++ MD+   GR +TA EA   GL +++V     + EA+ 
Sbjct: 143 ----LPGLGGT-QRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALA 197
Query: 236 RAIQMSKLSQ 245
            A +++++S+
Sbjct: 198 VAQRIARMSR 207

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 47/251 (18%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE---L 81
           +  I L RP++ NA+N + ++ L + I++  D +   + +L GQ   FC+G DL      
Sbjct: 31  VLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAI-VLTGQGTAFCAGADLSGDAFA 89
Query: 82  DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
            + PD +L +  +     P   P++ AI G A+G GL LA+ CDLR V  +    F   +
Sbjct: 90  ADYPD-RLIELHKAMDASP--MPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSK 146
Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
           +          G+ L               DN S           IRRL  ++G  R   
Sbjct: 147 Y----------GLAL---------------DNWS-----------IRRLSSLVGHGRARA 170
Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLSECETC 261
           M+     +TA  AL  G+ N++   GT + +A   A ++++L+   +     VL++    
Sbjct: 171 MLLSAEKLTAEIALHTGMANRI---GT-LADAQAWAAEIARLAPLAIQHAKRVLNDDGAI 226
Query: 262 REEWMSERKHY 272
            E W + ++ +
Sbjct: 227 EEAWPAHKELF 237

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 57/237 (24%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL--- 81
           + LI LNRP  +NA+    +D L + +K FE+D      +L G +  F +G D+ E+   
Sbjct: 43  VGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEMQNL 102
Query: 82  --DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDL-------RFVEEN 132
              +   +K    +    Q   KKP+IAA+ GYA G G +LA+ CD+       +F +  
Sbjct: 103 SFQDCYSSKFLKHWDHLTQ--VKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPE 160
Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
           +L+G                                           IP    T +RL +
Sbjct: 161 ILIG------------------------------------------TIPGAGGT-QRLTR 177
Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
            +G S  M+M+  G  I+A++A   GL +K+    T V EA+  A +++  S+ ++A
Sbjct: 178 AVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVVA 234

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 87/219 (39%), Gaps = 41/219 (18%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + LI++NRPD  NA+N      L     + +   +  +AI+ G  GNFC+G DL      
Sbjct: 17  VLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSG 76
Query: 85  PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF--YNRRF 142
            +  L +    F   P +KPIIAA+ G+A+  G +L L CDL     +   G     R  
Sbjct: 77  -EAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGL 135
Query: 143 VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDM 202
           V     LL                                      RL   I     M++
Sbjct: 136 VAGAGGLL--------------------------------------RLPNRIPYQVAMEL 157
Query: 203 ISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS 241
              G   TA +A  +G  N++V+ G A+  A+  A +++
Sbjct: 158 ALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKIT 196

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + +I+LNRP  +NA+N + ++ +       +DD +    I+ G    F +G D+ E+ + 
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADL 74
Query: 85  PDTKLFD-DFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
                F  DF     K A  + P IAA+ GYA+G G +LA+ CD+    +    G     
Sbjct: 75  TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFG----- 129
Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
                                + ++K  +   +             +RL + IG ++ MD
Sbjct: 130 ---------------------QPEIKLGVLPGMGGS----------QRLTRAIGKAKAMD 158
Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
           +I  GR + A EA   GL +++V     + EA   A  +S++S S
Sbjct: 159 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSAS 203

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + +I+LNRP  +NA+N + ++ +       +DD +    I+ G    F +G D+ E+ + 
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADL 73
Query: 85  PDTKLFD-DFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
                F  DF     K A  + P IAA+ GYA+G G +LA+ CD+    +    G     
Sbjct: 74  TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFG----- 128
Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
                                + ++K  +   +             +RL + IG ++ MD
Sbjct: 129 ---------------------QPEIKLGVLPGMGGS----------QRLTRAIGKAKAMD 157
Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
           +I  GR + A EA   GL +++V     + EA   A  +S++S S
Sbjct: 158 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSAS 202

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + +I+LNRP  +NA+N + ++ +       +DD +    I+ G    F +G D+ E+ + 
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADL 94
Query: 85  PDTKLFD-DFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
                F  DF     K A  + P IAA+ GYA+G G +LA+ CD+    +    G     
Sbjct: 95  TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFG----- 149
Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
                                + ++K  +   +             +RL + IG ++ MD
Sbjct: 150 ---------------------QPEIKLGVLPGMGGS----------QRLTRAIGKAKAMD 178
Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
           +I  GR + A EA   GL +++V     + EA   A  +S++S S
Sbjct: 179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSAS 223

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I +I++NRP   N++N     AL + + R + D    + IL G  G+FC+G DL      
Sbjct: 25  ILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARG 84
Query: 85  PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDL 126
            +  +      F ++P  KP+IAA+ GYA+  G +LAL  DL
Sbjct: 85  ENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 11  LRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEG 70
           +R +S +   +   + L++LNRP   NA+N   L  L   ++    DT   + ++ G   
Sbjct: 1   MRSMSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNAR 60
Query: 71  NFCSGFDLHELDENPDTKLFDDFREFL---QKPAKKPIIAAITGYAVGQGLDLALWCDLR 127
            F +G DL+E+ E       +D R  L    +   KP+IAA+ GYA+G G +LAL CD+ 
Sbjct: 61  FFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVV 120
Query: 128 FVEENVLMGF 137
              EN   G 
Sbjct: 121 VAGENARFGL 130

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 54/228 (23%)
Query: 27  LISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD 86
           ++++NRP + NA++ + +  + E   R ++D +    IL G  G FC+G DL    + P 
Sbjct: 32  IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPP 91
Query: 87  TKLFDDFREFLQKPA-----------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
               D F++    P+           KKP+IAA+ G A+  G ++    D+R   E+   
Sbjct: 92  G---DSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKF 148
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G    ++             LY +                          +  RL + I 
Sbjct: 149 GISEAKW------------SLYPM------------------------GGSAVRLVRQIP 172
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243
            +   D++  GRHITA EA + GL   +V      G+A+T+A++++++
Sbjct: 173 YTVACDLLLTGRHITAAEAKEMGLVGHVV----PDGQALTKALEIAEI 216

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 49/227 (21%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
           N+ LI+++RPD  NA+N     A+ + ++  + D E    ++ G  + +FC+G DL  + 
Sbjct: 24  NVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKAIS 83
Query: 83  --------ENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
                   E+P+         F+ KP     IAA+ G A+G G +LAL  DL    E+  
Sbjct: 84  RGENLYHAEHPEWGFAGYVHHFIDKP----TIAAVNGTALGGGSELALASDLVIACESAS 139
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
            G             +  G++  A  V R      + + L R +A               
Sbjct: 140 FGLPE----------VKRGLIAGAGGVFR------IVEQLPRKVA--------------- 168
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS 241
                ++++  G  +TA +AL WGL N++V  GT V  A+  A +++
Sbjct: 169 -----LELVLTGEPMTASDALRWGLINEVVPDGTVVEAALALAERIT 210

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 53/216 (24%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHEL- 81
           N+ +I++NRP+  NAIN      + + ++  + D E    +L G  + +FC+G DL  + 
Sbjct: 18  NVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIA 77
Query: 82  -------DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
                   ++P+       R F+ KP     IAA+ G A+G G +LAL  DL   +E   
Sbjct: 78  RRENLYHPDHPEWGFAGYVRHFIDKP----TIAAVNGTALGGGTELALASDLVVADERAQ 133
Query: 135 MGFYNRRFVYLKDSLLSS--GVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
            G        +K  L+++  GV   A  +PR                             
Sbjct: 134 FGLPE-----VKRGLIAAAGGVFRIAEQLPRKV--------------------------- 161
Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGT 228
                  M ++  G  ++A  A DWGL N++V  G+
Sbjct: 162 ------AMRLLLTGEPLSAAAARDWGLINEVVEAGS 191

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 43/232 (18%)
Query: 16  SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           S+  ++   + +I L RPD +NA++ + +  +   ++ F+ + +  + +L G+   F +G
Sbjct: 6   SIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAG 65
Query: 76  FDLHELDENPDTKL-----FDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVE 130
            D+ E+ ++   +L     F D+        K P+IAA+ G A+G G +LAL CDL    
Sbjct: 66  ADIQEMAKDDPIRLEWLNQFADWDRL--SIVKTPMIAAVNGLALGGGFELALSCDLIVAS 123
Query: 131 ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRL 190
                GF                        P   L             +P    T +RL
Sbjct: 124 SAAEFGF------------------------PEVNLG-----------VMPGAGGT-QRL 147
Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
            ++IG  R ++ +  G  ++A+EA   G+ N++V+    + E M  A ++++
Sbjct: 148 TKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAE 199

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + +++L+ P   N+  ++    L    +R +DD    + +L G    FCSG  +    E
Sbjct: 16  GVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAE 75
Query: 84  NPDTKLFDDFREFLQKPA----KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
                   DF     +PA    + P+IAA+ G+A+G G+ LAL  D+R + E        
Sbjct: 76  TFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQ 135
Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
            RF    D+L                                    T+ RL   +GT+  
Sbjct: 136 VRFGVAPDAL---------------------------------AHWTLPRL---VGTAVA 159
Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM 234
            +++  G   +A+ A++ GL N+ +  G  +G A+
Sbjct: 160 AELLLTGASFSAQRAVETGLANRCLPAGKVLGAAL 194

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 53/216 (24%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHEL- 81
           N+ +I++NRP+  NA+N      + + ++  + D E    +L G  + +FC+G DL  + 
Sbjct: 18  NVMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIA 77
Query: 82  -------DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
                   ++P+       R F+ KP     IAA+ G A+G G +LAL  DL   +E   
Sbjct: 78  RRENLYHPDHPEWGFAGYVRHFIDKP----TIAAVNGTALGGGTELALASDLVVADERAQ 133
Query: 135 MGFYNRRFVYLKDSLLSS--GVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
            G        +K  L+++  GV   A  +PR                             
Sbjct: 134 FGLPE-----VKRGLIAAAGGVFRIAEQLPRKV--------------------------- 161
Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGT 228
                  M ++  G  ++A  A DWGL N++V  G+
Sbjct: 162 ------AMRLLLTGEPLSAAAARDWGLINEVVEAGS 191

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 49/213 (23%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I L++LNRP+++NA+    +   ++ +     D +    ++ G    FCSG D       
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPI 93
Query: 85  P-------------DTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           P               +L D+    L++   +P+IAAI G A+G GL LAL CD+R   +
Sbjct: 94  PHIGGLTQPTIALRSMELLDEVILTLRR-MHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
           +        R   + + L +S + L  L +PR                            
Sbjct: 153 DAYF-----RAAGINNGLTASELGLSYL-LPRA--------------------------- 179
Query: 192 QMIGTSRTMDMISLGRHITAREALDWGLCNKMV 224
             IGTSR  D++  GR + A EA   GL ++ V
Sbjct: 180 --IGTSRASDIMLTGRDVDADEAERIGLVSRKV 210

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 101/233 (43%), Gaps = 44/233 (18%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LNRP   NA++    D     +   E D +  + I+ G +  FC+G DL EL  +
Sbjct: 35  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKELGGS 94
Query: 85  PDTKLFDDFREFLQKPA-KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
             + L D    +   PA  KP+I AI G AV  GL+LAL+CD+    EN        RF 
Sbjct: 95  --SALPDISPRW---PALTKPVIGAINGAAVTGGLELALYCDILIASENA-------RFA 142
Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
                                       D  +R   +PT  +++ RL Q +G      M 
Sbjct: 143 ----------------------------DTHARVGLLPTWGLSV-RLPQKVGIGLARRMS 173
Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLS 256
             G +++A +AL  GL  ++V     +G A  RA+  S +  +  A RA + S
Sbjct: 174 LTGDYLSAADALRAGLVTEVVPHDQLLGAA--RAVAASIVGNNQNAVRALLTS 224

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 42/207 (20%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHE-- 80
           ++  ISLNR  + N+++L  L+ LQ  + +  ++  + + IL G  E  FC+G DL E  
Sbjct: 18  HVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERA 77
Query: 81  -LDENPDTKLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
             +E          R   +   +  +P+IAAI G A+G G +L+L CD R   E+  +G 
Sbjct: 78  GXNEEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG- 136
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                  L ++ L+                            IP    T +RL ++IG  
Sbjct: 137 -------LTETTLA---------------------------IIPGAGGT-QRLPRLIGVG 161
Query: 198 RTMDMISLGRHITAREALDWGLCNKMV 224
           R  ++I  GR I+A+EA ++GL   +V
Sbjct: 162 RAKELIYTGRRISAQEAKEYGLVEFVV 188

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 47/210 (22%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN-FCSGFDLH--- 79
            I  I++NRP+  NA   KT++ + +   +  DD+   + IL G  G  FCSG D     
Sbjct: 21  GIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRG 80
Query: 80  -----ELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
                  DE P   + D  R  L +   KP+IA + GYA+G G  L + CDL    +N +
Sbjct: 81  HGGYVGEDEIPRLNVLDLQR--LIRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAI 138
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
            G    + V   D    +G                                    L +++
Sbjct: 139 FGQTGPK-VGSFDGGYGAGY-----------------------------------LARIV 162
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMV 224
           G  +  ++  L R  TA+EAL+ GL NK+V
Sbjct: 163 GHKKAREIWYLCRQYTAQEALEMGLVNKVV 192

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 44/233 (18%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LNRP   NA++    D     +   E D +  + I+ G +  FC+G DL EL  +
Sbjct: 18  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKELGGS 77
Query: 85  PDTKLFDDFREFLQKPA-KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
             + L D    +   PA  KP+I AI G AV  GL+LAL+CD+    EN        RF 
Sbjct: 78  --SALPDISPRW---PALTKPVIGAINGAAVTGGLELALYCDILIASENA-------RFA 125
Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
                                       D  +R   +PT  +++ RL Q +G      M 
Sbjct: 126 ----------------------------DTHARVGLLPTWGLSV-RLPQKVGIGLARRMS 156
Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVLS 256
             G +++A +AL  GL  ++V     +G A  +A+  S +  +  A RA + S
Sbjct: 157 LTGDYLSAADALRAGLVTEVVPHDQLLGAA--QAVAASIVGNNQNAVRALLAS 207

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 49/211 (23%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHEL 81
            I  +++NRP+  NA   KT+  + +   R  DD    + +L G EG+  FCSG D  + 
Sbjct: 22  GIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTG-EGDLAFCSGGDQKKR 80
Query: 82  --------DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
                   D+ P   + D  R  L +   KP+IA + GYAVG G  L + CDL    +N 
Sbjct: 81  GHGGYVGEDQIPRLNVLDLQR--LIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNA 138
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
           + G    + V   D+   SG                                    L ++
Sbjct: 139 IFGQTGPK-VGSFDAGYGSGY-----------------------------------LARI 162
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMV 224
           +G  +  ++  L R   A+EALD GL N +V
Sbjct: 163 VGHKKAREIWYLCRQYNAQEALDMGLVNTVV 193

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 45/233 (19%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ ++ LN P++ N ++ +   +L + +   E D      +L G+   F +G DL  L+ 
Sbjct: 8   HVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67
Query: 84  NPDTKLFDDFREFLQ--------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
             +    +++R  L             KP +AA+ G AV  G  LAL CDL   +E   +
Sbjct: 68  VTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARL 127
Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G+   +  ++  +L+S  V+L                                   + +G
Sbjct: 128 GYTEVKIGFVA-ALVS--VILV----------------------------------RAVG 150
Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
                D++  GR + AREA   GL N++   G A+ EA   A +++K + + L
Sbjct: 151 EKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSL 203

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 27  LISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFD---LHELDE 83
           +I+LNRPD +N++N      L    +R  DD  +  A++ G    F +G D   L EL  
Sbjct: 40  IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSA 99
Query: 84  NPD--TKLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
           + D   K   D RE +   A+   P++AA+ G AVG G  L    D+ ++ EN       
Sbjct: 100 DADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAEN------- 152
Query: 140 RRFVYLKDSLLSSGVV 155
               YL D  +  G+V
Sbjct: 153 ---AYLADPHVQVGLV 165

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 46/210 (21%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD- 82
            +  I++  P   NA+++K +  + + + R E+D      ++ G E  FC+GF L E+  
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 83  ENPDTKLFDDFR-------EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           +     + D FR       + + K    K+P++AAI G A G GL ++L  D+    ++ 
Sbjct: 72  DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
                  +FV              A H                 + I     T   L ++
Sbjct: 132 -------KFV-------------CAWHT----------------IGIGNDTATSYSLARI 155
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKM 223
           +G  R M+++   R +   EA DWGL +++
Sbjct: 156 VGMRRAMELMLTNRTLYPEEAKDWGLVSRV 185

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 46/210 (21%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD- 82
            +  I++  P   NA+++K +  + + + R E+D      ++ G E  FC+GF L E+  
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 83  ENPDTKLFDDFR-------EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           +     + D FR       + + K    K+P++AAI G A G GL ++L  D+    ++ 
Sbjct: 72  DKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
                  +FV              A H                 + I     T   L ++
Sbjct: 132 -------KFV-------------CAWHT----------------IGIGNDTATSYSLARI 155
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKM 223
           +G  R M+++   R +   EA DWGL +++
Sbjct: 156 VGMRRAMELMLTNRTLYPEEAKDWGLVSRV 185

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 53/230 (23%)
Query: 15  SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCS 74
           S++    +  +  I LNRP K NA+N   + AL++ +    D   +   +++G   +F +
Sbjct: 16  STLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDIPDQIRA--VVIHGIGDHFSA 73
Query: 75  GFDLHELDENPDT----------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWC 124
           G DL EL E   T          ++FD  +       + P+IAA+ G  +G GL+LA   
Sbjct: 74  GLDLSELRERDATEGLVHSQTWHRVFDKIQY-----CRVPVIAALKGAVIGGGLELACAA 128
Query: 125 DLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCD 184
            +R  E +                        YAL  P            SR + +    
Sbjct: 129 HIRVAEAS----------------------AYYAL--PEG----------SRGIFVGGGG 154
Query: 185 VTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM 234
               RL ++IG +R  DM+  GR  +A E +  G    ++  G+A  +A+
Sbjct: 155 SV--RLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKAL 202

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 46/210 (21%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD- 82
            +  I++  P   NA+++K +  + + + R E+D      ++ G E  FC+GF L E+  
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 83  ENPDTKLFDDFR-------EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           +     + D FR       + + K    K+P++AAI G A G GL ++L  D+    ++ 
Sbjct: 72  DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
                  +FV              A H                 + I     T   L ++
Sbjct: 132 -------KFV-------------CAWHT----------------IGIGNDTATSYSLARI 155
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKM 223
           +G  R M+++   R +   EA DWGL +++
Sbjct: 156 VGMRRAMELMLTDRTLYPEEAKDWGLVSRV 185

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 39/200 (19%)
Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT 87
           I L+RP+K+NA++   L+ L  +I+  E D      +L G    FCSG DL   D     
Sbjct: 19  IRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAA 78
Query: 88  KLFDD-FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLK 146
              +   R     P  KP+IA + G AVG G  LAL CDL                    
Sbjct: 79  DAANRVVRAITSLP--KPVIAGVHGAAVGFGCSLALACDL-------------------- 116
Query: 147 DSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLG 206
             ++++    + L   R  L   + D  +  L           L  +IG +RT  M    
Sbjct: 117 --VVAAPASYFQLAFTRVGL---MPDGGASAL-----------LPLLIGRARTSRMAMTA 160
Query: 207 RHITAREALDWGLCNKMVNC 226
             I+A  A +WG+ + + + 
Sbjct: 161 EKISAATAFEWGMISHITSA 180

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 64/245 (26%)
Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT 87
           + LNRP+K NA+N      L E  ++   D++    ++ G    F SG DL ++  +   
Sbjct: 17  VQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQ 76
Query: 88  KLFDD-------FREFLQKPAK---------KPIIAAITGYAVGQGLDLALWCDLRFVEE 131
              DD        R+ + +  K         KP+IAAI G  +G G+DL   CD+R+  +
Sbjct: 77  PPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQ 136
Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG 191
           +    F+  + V +                            L+ D+       T++RL 
Sbjct: 137 D---AFFQVKEVDV---------------------------GLAADVG------TLQRLP 160
Query: 192 QMIGTSRTMDMISL-GRHITAREALDWGLCNK-------MVNCGTAVGEAMTR----AIQ 239
           ++IG    ++ ++   R + A EALD GL ++       M+N   A+   ++     A+Q
Sbjct: 161 KVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ 220
Query: 240 MSKLS 244
            SK++
Sbjct: 221 GSKIN 225

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 40/200 (20%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LNRP   NA++ +        +   ++D +  + I+ G +  FC+G DL EL + 
Sbjct: 19  VRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT 78
Query: 85  PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVY 144
             T+L D   ++      KP+I AI G AV  GL+LAL+CD+    EN        +F  
Sbjct: 79  --TELPDISPKWPDM--TKPVIGAINGAAVTGGLELALYCDILIASENA-------KFA- 126
Query: 145 LKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMIS 204
                                      D  +R   +PT  +++ RL Q +G      M  
Sbjct: 127 ---------------------------DTHARVGLMPTWGLSV-RLPQKVGVGLARRMSL 158
Query: 205 LGRHITAREALDWGLCNKMV 224
            G +++A++AL  GL  ++V
Sbjct: 159 TGDYLSAQDALRAGLVTEVV 178

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN-FCSGFDLHELD 82
            +  ++LNRP   NA++   L AL E      +D ES  A++    G  FC+G DL E+ 
Sbjct: 35  GVVTLTLNRPQAFNALSEAMLAALGEAFGTLAED-ESVRAVVLAASGKAFCAGHDLKEMR 93
Query: 83  ENPDTKLFD-------DFREFLQK-PAKKPIIAAITGYAVGQGLDLALWCDL-------R 127
             P  + ++       D    +Q+ PA  P+IA + G A   G  L   CDL       R
Sbjct: 94  AEPSREYYEKLFARCTDVMLAIQRLPA--PVIARVHGIATAAGCQLVAMCDLAVATRDAR 151
Query: 128 FVEENVLMGFY 138
           F    + +G +
Sbjct: 152 FAVSGINVGLF 162

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 89/218 (40%), Gaps = 45/218 (20%)
Query: 64  ILYGQEGNFCSGFDLHELD--ENPDTKLFDDFR-EFLQKPAK--KPIIAAITGYAVGQGL 118
           +L+G    F +G D+ EL     P+       R E +   A   KP +AA+TGYA+G GL
Sbjct: 72  VLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGL 131
Query: 119 DLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDL 178
            LAL  D R   +NV  G                           T++   L        
Sbjct: 132 TLALAADWRVSGDNVKFG--------------------------ATEILAGL-------- 157
Query: 179 AIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238
            IP     + RL +++G+SR  +++  GR   A EAL  GL + MV        A+  A 
Sbjct: 158 -IPGG-GGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWAR 215
Query: 239 QMSKLSQSMLADRATVLS---ECETCREEWMSERKHYI 273
           +  +     LA    V++   E E   E   +ER+ Y+
Sbjct: 216 RYLECPPRALAAAKAVINDVFELEAT-ERAAAERRRYV 252

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 43/227 (18%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           +I + +LN     NA + +    + E I + E D    + +++G+   F +G D+ E   
Sbjct: 15  HIAVATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73
Query: 84  NPDTKLFDDFREFLQ------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
             + K   +  +  Q      +   KP+IAAI G A+G GL+ A  C  RF  E+  +G 
Sbjct: 74  VTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKLGL 133
Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                       L+ G+                         IP    T +RL + +G +
Sbjct: 134 PE----------LTLGL-------------------------IPGFAGT-QRLPRYVGKA 157
Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS 244
           +  +       IT  EAL WGL N +    T + + +  A Q++  S
Sbjct: 158 KACEXXLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKS 204

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LNRP+ +NA N    DA  + +    DD +  + +L G    F +G DL E+   
Sbjct: 16  VRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQAR 75
Query: 85  PDTKLFDD----FREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
                F +    FR  ++  A   KP+I A+ G  VG G  +  + DL F+    
Sbjct: 76  ITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTA 130

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I  I+LNRP+  NA N + LD L     R  +D +  + +L     +F +G DL      
Sbjct: 30  IATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPV 89
Query: 85  PDTKLFDDF------REFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           PD KL  +F      R +L+     +   KP IAA+ G  +  GL L   CDL    E+ 
Sbjct: 90  PD-KLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDA 148
Query: 134 L 134
           L
Sbjct: 149 L 149

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           +I  I+LNRP+  NA N + LD L     R  +D E  + IL     +F +G DL    E
Sbjct: 32  SIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLRGGGE 91
Query: 84  NPDTKLFD-----DFREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
            P+    +     + R +L      +   KP IAA+ G  +  GL L   CDL    ++ 
Sbjct: 92  VPEKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILASDDA 151
Query: 134 L 134
           L
Sbjct: 152 L 152

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD- 82
            + +I+ NR D++NA            I R E D    + +L G+   FC+G  L   D 
Sbjct: 39  GVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADA 98
Query: 83  ---------ENPDTKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLR 127
                    +  D  L D   E   +P       +KP+IAAI G  VG GL  AL CD+R
Sbjct: 99  AAGYDKTMAKAKDANLADLVGE---RPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVR 155

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 86/225 (38%), Gaps = 54/225 (24%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + ++++NRP + NA++   +          + D     AIL G    +C G DL      
Sbjct: 19  VVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS----- 73
Query: 85  PDTKLFDDFREFLQKPAK------------KPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
            D  +  D       PA             KP+IAA+ G  +G G ++    D+R  +E+
Sbjct: 74  -DGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEH 132
Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
              G                         P  Q          R L +P     + RL +
Sbjct: 133 ATFGL------------------------PEVQ----------RGL-VPGAGSMV-RLKR 156
Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
            I  ++ M+MI  G  +TA EA  +GL   +V  GTA+ +A + A
Sbjct: 157 QIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLA 201

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 50/234 (21%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFE-DDTESPLAILYGQEGNFCSGFDLHELDE 83
           + +I+L+ P+K N  +     ++++ + R   DD+   + +  G E +F +G D +E+ +
Sbjct: 10  VRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQ 69
Query: 84  NPDTKLFDDFREFLQK---------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
              +   +D  E++ +            KP IAA+ GYA+G G   AL  D R +     
Sbjct: 70  LSRS---EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTA- 125
Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
                  FV                 +P  +LKH +            C V    LG   
Sbjct: 126 ------NFV-----------------MP--ELKHGI-----------GCSVGAAILGFTH 149
Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
           G S   ++I   + + A   +D+ L N++V     +  A+T+A  M+    S  
Sbjct: 150 GFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAF 203

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 27  LISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN-FCSGFDLHELDENP 85
           +I+LNRP  +NA+ L  +  +   +K++E D E+ L I+ G  G  FC+G D+  + E  
Sbjct: 18  VITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAE 77
Query: 86  DTK-----LFDDFREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
             K     +F  FRE           +KP +A I G   G G+ L++    R   E  L 
Sbjct: 78  KAKQKIAPVF--FREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRVATEKCLF 135

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 110/290 (37%), Gaps = 64/290 (22%)
Query: 17  VCTKKILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           +  KK    T I L+ R  + NA+N + +  +   +     D +S L +       FC G
Sbjct: 6   IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCG 64
Query: 76  FDLHEL------DENPDT-KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDL 126
            D          D N  + ++ D  + F+      KKPI+ ++ G A+G G  +   CDL
Sbjct: 65  LDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 124
Query: 127 RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
            +  E                              P T    S  D  S  +  P     
Sbjct: 125 VWANEKAW------------------------FQTPYTTFGQS-PDGCS-SITFP----- 153
Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
                +M+G +   +M+  GR +TAREA   GL +++   GT   E M +  +++  +  
Sbjct: 154 -----KMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAI 208
Query: 247 MLADRATVL-------------SECETCREEWMSERKHYIGISFELKFLQ 283
           +L +   ++              ECE  R+ W S +    GI   LK+++
Sbjct: 209 VLEECKALVRCNIKLELEQANERECEVLRKIWSSAQ----GIESMLKYVE 254

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 103/269 (38%), Gaps = 63/269 (23%)
Query: 37  NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFD-------LHELDENPDTKL 89
           N++N + +  +Q  +     D +S L +L      FC G D       L +  +   TK+
Sbjct: 28  NSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKM 86
Query: 90  FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKD 147
            +  R F+      KKPII A+ G A+G G  +   CD+ +  E                
Sbjct: 87  AEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAW------------- 133
Query: 148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGR 207
                         P T    S           P    T+    +++G +   +M+  GR
Sbjct: 134 -----------FQTPYTTFGQS-----------PDGCSTV-MFPKIMGGASANEMLLSGR 170
Query: 208 HITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRATVL------------ 255
            +TA+EA   GL +++   GT   E M R  +++  +  +L +   ++            
Sbjct: 171 KLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 230
Query: 256 -SECETCREEWMSERKHYIGISFELKFLQ 283
             ECE  ++ W S +    G+   LK+LQ
Sbjct: 231 ERECEVLKKIWGSAQ----GMDSMLKYLQ 255

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN--- 84
           I+LNRPD +NA++   +  L+      E+D    L ++ G    FCSG D+ E+ E+   
Sbjct: 24  ITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKV 83
Query: 85  ----PDTKLFDDFREFLQ-----KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
               P    +D +    +     +   KP++ A+ G   G G+D     D+    E  
Sbjct: 84  IYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQA 141

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 105/276 (38%), Gaps = 60/276 (21%)
Query: 17  VCTKKILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSG 75
           +  KK    T I L+ R  + NA+N + +  +   +     D +S L +       FC G
Sbjct: 25  IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAAD-DSKLVLFSAAGSVFCCG 83
Query: 76  FD----LHELDENPDT---KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDL 126
            D    +  L  N +T   ++ D  + F+      KKPI+ ++ G A+G G  +   CDL
Sbjct: 84  LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 143
Query: 127 RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
            +  E                              P T    S  D  S  +  P     
Sbjct: 144 VWANEKAW------------------------FQTPYTTFGQS-PDGCS-SITFP----- 172
Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
                +M+G +   +M+  GR +TAREA   GL +++   GT   E M +  +++  +  
Sbjct: 173 -----KMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPI 227
Query: 247 MLADRATVL-------------SECETCREEWMSER 269
           +L +   ++              ECE  R+ W S +
Sbjct: 228 VLEECKALVRCNIKLELEQANERECEVLRKIWSSAQ 263

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT 87
           + LNRP+K NA+N      + E   +   D +    ++ G    F +G DL ++  +   
Sbjct: 44  VQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQ 103
Query: 88  KLFDD-------FREFLQKPAK---------KPIIAAITGYAVGQGLDLALWCDLRFVEE 131
              DD        R+ + +  +         KP+IAA+ G  +G G+DL   CD+R+  +
Sbjct: 104 PKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQ 163
Query: 132 NVL 134
           +  
Sbjct: 164 DAF 166

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE- 83
           + +I LNRP K NA +   L+ L   +  +E DT+   A+LYG+   F +G DL  +   
Sbjct: 19  VLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAE 78
Query: 84  -------NPDTKLFD---DFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
                   P+  +     D R+       KP++ A+ G  +  G++LAL  D+   +E 
Sbjct: 79  IQGGASLTPEGGINPWQVDGRQL-----SKPLLVAVHGKVLTLGIELALAADIVIADET 132

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 19  TKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL 78
            +++  I  I L+ P K N ++L  L +LQ +I    D  +  + I+  +   F SG DL
Sbjct: 37  ARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDL 96
Query: 79  HELDENPDTKLFDDFREFLQKPAKK---------PIIAAITGYAVGQGLDLALWCDLRFV 129
            EL E    +  D   E  Q  +K          P+IA + G A   G  L   CD+   
Sbjct: 97  KELTEE---QGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVA 153
Query: 130 EENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRR 189
            +              K S  + GV +                          C      
Sbjct: 154 SD--------------KSSFATPGVNVGLF-----------------------CSTPGVA 176
Query: 190 LGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           L + +     ++M+  G  I+A+EAL  GL +K+V       E M  A +++ LS+ +++
Sbjct: 177 LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS 236

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 95/268 (35%), Gaps = 63/268 (23%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           IT I  NRP K NAIN +    +   +K    D +S + +L G    + SG DL    + 
Sbjct: 36  ITKIXFNRPKKKNAINTEXYHEIXRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTDI 94
Query: 85  PDTKLFDDFRE-----------FLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           P   + +  +            F+  P  KP+IA + G AVG  +               
Sbjct: 95  PPGGVEEKAKNNAVLLREFVGCFIDFP--KPLIAVVNGPAVGISV--------------T 138
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
           L+G ++   VY  D            H P + L  S     S                ++
Sbjct: 139 LLGLFDA--VYASDRA--------TFHTPFSHLGQSPEGCSSYTFP------------KI 176
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
              ++  + +  G+ +TA EA   GL  ++    T   E  TR    +KL  + L     
Sbjct: 177 XSPAKATEXLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKE 236
Query: 254 VL-------------SECETCREEWMSE 268
           V+              EC   +  W+S+
Sbjct: 237 VIRKREREKLHAVNAEECNVLQGRWLSD 264

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 42/158 (26%)
Query: 72  FCSGFDLHELDENPDTKLFDDF----REFLQKPAKKP--IIAAITGYAVGQGLDLALWCD 125
           F +G D++ L  + D +    F     E L K A+ P   IA + G+ VG GL+ AL CD
Sbjct: 66  FSAGADINFL-RSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEXALACD 124
Query: 126 LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV 185
           LRF                        G     + +P               L +     
Sbjct: 125 LRF-----------------------XGDEAGKIGLPEVS------------LGVLAGTG 149
Query: 186 TIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKM 223
             +RL ++IG SR +D    G  IT +EAL+ GL N++
Sbjct: 150 GTQRLARLIGYSRALDXNITGETITPQEALEIGLVNRV 187

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 32  RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN---PDT- 87
           + + +N  N  TL+ L++ +   + D      I+   +  F  G D+ E  EN   PD  
Sbjct: 25  KGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAE 84
Query: 88  ---------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
                    K+F DF +        P +AAI G A+G GL++ L  D R + ++  +G 
Sbjct: 85  LIAGNLEANKIFSDFEDL-----NVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGL 138

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 94/258 (36%), Gaps = 61/258 (23%)
Query: 21  KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG----QEGN--FCS 74
           K   I  I +NRP K NA   +T+  L +      +D    + +L G     +G   FCS
Sbjct: 16  KAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCS 75
Query: 75  GFDLHELDEN--------PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDL 126
           G D     E         P   + D  R     P  K +IA + GYA+G G  L L CDL
Sbjct: 76  GGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMP--KVVIALVAGYAIGGGHVLHLVCDL 133
Query: 127 RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
               +N + G    +         SS                                  
Sbjct: 134 TIAADNAIFGQTGPKVGSFDGGFGSS---------------------------------- 159
Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LS 244
              L +++G  +  ++  L R  +A+EA   G+ N +V     V       IQ +K  LS
Sbjct: 160 --YLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVV----PVDRLEEEGIQWAKEILS 213
Query: 245 QSMLADR---ATVLSECE 259
           +S LA R   A   ++C+
Sbjct: 214 KSPLAIRCLKAAFNADCD 231

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 48/207 (23%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ +I L  P  +NA++   +  ++  +++   D      ++ G  GNFC+G D+H    
Sbjct: 30  SLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88
Query: 84  -NPD---TKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
             P      L D+ + +     +KP++AAI G A+G GL+LAL C  R       +G   
Sbjct: 89  FTPGLALGSLVDEIQRY-----QKPVLAAIQGVALGGGLELALGCHYRIANAKARVGL-- 141
Query: 140 RRFVYLKDSLLSSGVVLYALHVPR-TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
                         V L  L   R TQL                       L +++G   
Sbjct: 142 ------------PAVTLGILPGARGTQL-----------------------LPRVVGVPV 166
Query: 199 TMDMISLGRHITAREALDWGLCNKMVN 225
            +D+I+ G++++A EAL  G+ + +V 
Sbjct: 167 ALDLITSGKYLSADEALRLGILDAVVK 193

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 76/211 (36%), Gaps = 46/211 (21%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
             G     +                                     IP  ++  + +   
Sbjct: 138 TFGLSEINY------------------------------------GIPPGNLVSKAMADT 161
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMV 224
           +G  +++  I  G+    ++A + GL N+ V
Sbjct: 162 VGHRQSLYYIMTGKTFGGQKAAEMGLVNESV 192

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 134 LMGF 137
             G 
Sbjct: 138 TFGL 141

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 134 LMGF 137
             G 
Sbjct: 138 TFGL 141

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 134 LMGF 137
             G 
Sbjct: 138 TFGL 141

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 18/144 (12%)
Query: 13  LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNF 72
           L+  V ++ +L +TL         + ++   + AL + ++R   D    + +++G    F
Sbjct: 8   LLGEVLSEGVLTLTLGRA----PAHPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIF 63
Query: 73  CSGFDLHELDE---NPD------TKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLA 121
           C+G DL E+     +PD      T LF+         A   KP IA + G A   GL L 
Sbjct: 64  CAGHDLKEIGRHRADPDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQLX 123
Query: 122 LWCDLRFVEENV---LMGFYNRRF 142
             CDL +        L G  N  F
Sbjct: 124 AACDLAYASPAARFCLPGVQNGGF 147

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 20  KKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDL 78
           K    I  I++NRP   NA    T+  + + +     D    + IL G  +  FCSG D 
Sbjct: 33  KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQ 92
Query: 79  HELDENPDTK---------LFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFV 129
               +    K         + D  R+    P  KP++A + GY++G G  L + CDL   
Sbjct: 93  KVRGDYGGYKDDSGVHHLNVLDFQRQIRTCP--KPVVAMVAGYSIGGGHVLHMMCDLTIA 150
Query: 130 EENVLMG 136
            +N + G
Sbjct: 151 ADNAIFG 157

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 48/207 (23%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ +I L  P  +NA++   +  ++  +++   D      ++ G  GNFC+G D+H    
Sbjct: 15  SLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 73
Query: 84  -NPD---TKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
             P      L D+ + +     +KP++AAI G A+G GL+LAL C  R       +G   
Sbjct: 74  FTPGLALGSLVDEIQRY-----QKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPE 128
Query: 140 RRFVYLKDSLLSSGVVLYALHVPR-TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
                         V L  L   R TQL                       L +++G   
Sbjct: 129 --------------VTLGILPGARGTQL-----------------------LPRVVGVPV 151
Query: 199 TMDMISLGRHITAREALDWGLCNKMVN 225
            +D+I+ G++++A EAL  G+ + +V 
Sbjct: 152 ALDLITSGKYLSADEALRLGILDAVVK 178

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 48/207 (23%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ +I L  P  +NA++   +  ++  +++   D      ++ G  GNFC+G D+H    
Sbjct: 30  SLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88
Query: 84  -NPD---TKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
             P      L D+ + +     +KP++AAI G A+G GL+LAL C  R       +G   
Sbjct: 89  FTPGLALGSLVDEIQRY-----QKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPE 143
Query: 140 RRFVYLKDSLLSSGVVLYALHVPR-TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
                         V L  L   R TQL                       L +++G   
Sbjct: 144 --------------VTLGILPGARGTQL-----------------------LPRVVGVPV 166
Query: 199 TMDMISLGRHITAREALDWGLCNKMVN 225
            +D+I+ G++++A EAL  G+ + +V 
Sbjct: 167 ALDLITSGKYLSADEALRLGILDAVVK 193

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 20  KKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDL 78
           K    I  I++NRP   NA    T+  + + +     D    + IL G  +  FCSG D 
Sbjct: 29  KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQ 88
Query: 79  HELDENPDTK---------LFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFV 129
               +    K         + D  R+    P  KP++A + GY++G G  L + CDL   
Sbjct: 89  KVRGDYGGYKDDSGVHHLNVLDFQRQIRTCP--KPVVAMVAGYSIGGGHVLHMMCDLTIA 146
Query: 130 EENVLMG 136
            +N + G
Sbjct: 147 ADNAIFG 153

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 134 LMGF 137
             G 
Sbjct: 138 TFGL 141

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 76/211 (36%), Gaps = 46/211 (21%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
             G     +                                     IP  ++  + +   
Sbjct: 138 TFGLSEINY------------------------------------GIPPGNLVSKAMADT 161
Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMV 224
           +G  +++  I  G+    ++A + GL N+ V
Sbjct: 162 VGHRQSLYYIMTGKTFGGQKAAEMGLVNESV 192

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 134 LMGF 137
             G 
Sbjct: 138 TFGL 141

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP++ NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 134 LMGF 137
             G 
Sbjct: 138 TFGL 141

>pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 35/152 (23%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL------ 78
           +  I+ NRP+K NAI   T   L   ++R + D +  + ++ G+   FC+GFDL      
Sbjct: 45  VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEG 104
Query: 79  -----------------------HELDENPDTKL-FDDFREFLQKPAK-----KPIIAAI 109
                                  H  DE  D  + +     F++  A      KP +  I
Sbjct: 105 SSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKI 164
Query: 110 TGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
            GY V  G D+AL  D      +  +G+   R
Sbjct: 165 HGYCVAGGTDIALHADQVIAAADAKIGYPPMR 196

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDL----H 79
            I  + LNRP++ NA++      + + ++  E D  + + +L G    + +G DL     
Sbjct: 18  GIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 80  ELDENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           E+D  P+       RE  Q   K      KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 134 LMGF 137
             G 
Sbjct: 138 TFGL 141

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 26/134 (19%)
Query: 20  KKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFD 77
           K    I  I++NRP   NA    T+    + +     D    + IL G EG+  FC+G D
Sbjct: 32  KSTDGIAKITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTG-EGDKAFCAGGD 90
Query: 78  ---------------LHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLAL 122
                          +H L+      + D  R+    P  KP++A + GY++G G  L  
Sbjct: 91  QKVRGDYGGYQDDSGVHHLN------VLDFQRQIRTCP--KPVVAXVAGYSIGGGHVLHX 142
Query: 123 WCDLRFVEENVLMG 136
            CDL    EN + G
Sbjct: 143 XCDLTIAAENAIFG 156

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
            +  +++NRP+  NA+  +    + + +   + + +  + +L G E +F +G D+ +   
Sbjct: 14  GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMG 73
Query: 82  -DENPDTKLFDDFREF--LQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
             +NP+         F  L+  A+  KP+I A+ G A+G G+ + L  DL F +   L
Sbjct: 74  FVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTAL 131

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LN P   NA++   +  L + ++    D    + +L    G FC+G DL E    
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSG 80
Query: 85  PD-TKLFDDFREFLQKPA---------KKPIIAAITGYAVGQGLDLALWCDL 126
              +  +D   E  ++ A         + P+IAAI G+    G  L   CD+
Sbjct: 81  GSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDI 132

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 28  ISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT 87
            +L+RP+K NA++ + ++AL + +     + + PL +  G   NF +GFD  + +   + 
Sbjct: 20  FTLSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDFTDYETQSEG 78
Query: 88  KLF---DDFREFLQKPAKKP--IIAAITGYAVGQGLDLALWCDLRF 128
            L          LQ+ A  P   +A   G   G G+DL   C  R+
Sbjct: 79  DLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRY 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	2e-53
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-38
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	5e-38
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	2e-37
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	6e-37
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	8e-37
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-36
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	5e-36
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	5e-36
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	7e-36
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-35
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	1e-35
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	2e-35
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	5e-35
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	7e-35
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	1e-34
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-34
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	6e-34
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	8e-34
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	8e-34
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	1e-33
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-33
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	2e-33
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	3e-33
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	3e-33
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	4e-33
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	7e-33
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	7e-33
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	1e-32
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-32
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	2e-32
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-32
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	2e-32
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	2e-32
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	3e-32
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	4e-32
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	5e-32
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	8e-32
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	9e-32
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	1e-31
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	1e-31
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-31
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	5e-31
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	6e-31
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	1e-30
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	4e-29
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	6e-29
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-28
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	1e-27
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	1e-27
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-27
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	5e-27
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	9e-27
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-26
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	2e-25
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	2e-24
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	1e-09
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	3e-24
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	3e-24
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	2e-23
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	7e-10
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	3e-23
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	4e-08
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	4e-23
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	8e-22
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	4e-20
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	4e-20
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	7e-20
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	9e-20
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-08
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	1e-19
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	8e-10
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	4e-19
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-08
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	6e-19
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	3e-09
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	2e-18
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	3e-09
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-17
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-08
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	2e-12

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  174 bits (443), Expect = 2e-53
 Identities = 84/273 (30%), Positives = 127/273 (46%), Gaps = 46/273 (16%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +T + LNRP   NA++  T  AL      F+ D E+ +A+L+G  G FC+G DL  +  
Sbjct: 20  PVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGT 79

Query: 84  NPDTKLFDDFREFL---QKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
           +   +L       +   +    KP+IAAI+G+AV  G++LALWCDLR VEE+ ++G + R
Sbjct: 80  DRGNELHPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCR 139

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
           R+          GV L       T                        RL ++IG SR M
Sbjct: 140 RW----------GVPLID---GGTI-----------------------RLPRLIGHSRAM 163

Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ-SMLADRATVLSECE 259
           D+I  GR + A EALD GL N++V  G A   A T A +++   Q  + ADR + +++  
Sbjct: 164 DLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWG 223

Query: 260 TCREE-WMSERKHYIGISFELK-----FLQKKK 286
              E    +E      ++ E       F   + 
Sbjct: 224 MAEEAALDNEFGSIERVATEALEGAGRFAAGEG 256

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  135 bits (343), Expect = 2e-38
 Identities = 52/238 (21%), Positives = 81/238 (34%), Gaps = 48/238 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
           ++ LI L+R  K NA +   L  L   +  +E   ES  A+L+    +F +G DL EL  
Sbjct: 21  HLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAP 80

Query: 82  ----DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
                         D    +Q    KP++ A+ G     G++L L  D+           
Sbjct: 81  KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAH 140

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                          G+                          P    T+R   +  G +
Sbjct: 141 LEVLR----------GI-------------------------PPLGGSTVR-FPRAAGWT 164

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL--SQSMLADRAT 253
             M  I  G    A EAL   L  ++V      GE + RA++ ++     + LA RA 
Sbjct: 165 DAMRYILTGDEFDADEALRMRLLTEVV----EPGEELARALEYAERIARAAPLAVRAA 218

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  134 bits (340), Expect = 5e-38
 Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 38/251 (15%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I +I++NRP   N++N     AL + + R + D    + IL G  G+FC+G DL     
Sbjct: 24  RILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFAR 83

Query: 84  NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
             +  +      F ++P  KP+IAA+ GYA+  G +LAL  DL     +   G       
Sbjct: 84  GENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFG------- 136

Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
                            +P  ++K  L         +      +R L + I  +  M++ 
Sbjct: 137 -----------------IP--EVKRGL---------VAGGGGLLR-LPERIPYAIAMELA 167

Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ--SMLADRATVLSECETC 261
             G +++A  A   G+ N +   G A+  A+  A +++           R    S   + 
Sbjct: 168 LTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRIITESRGWSL 227

Query: 262 REEWMSERKHY 272
              +  + K  
Sbjct: 228 DTRFAQQMKIL 238

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  133 bits (337), Expect = 2e-37
 Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 53/256 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + +++L+ P   N+  ++    L    +R +DD    + +L G    FCSG  +    E
Sbjct: 16  GVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAE 75

Query: 84  NPDTKLFDDFREFLQKPA----KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
                   DF     +PA    + P+IAA+ G+A+G G+ LAL  D+R + E        
Sbjct: 76  TFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAI-- 133

Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
              V         GV                          P        L +++GT+  
Sbjct: 134 -PQVRF-------GV-------------------------APDALAHW-TLPRLVGTAVA 159

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM-----------TRAIQMSKLSQSML 248
            +++  G   +A+ A++ GL N+ +  G  +G A+             +  ++K  + + 
Sbjct: 160 AELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAALTK--RLLW 217

Query: 249 ADRATVLSECETCREE 264
             + T +S  E    E
Sbjct: 218 DAQMTGMSAAEVAARE 233

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  131 bits (333), Expect = 6e-37
 Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 39/251 (15%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + LI++NRPD  NA+N      L     + +   +  +AI+ G  GNFC+G DL     
Sbjct: 16  RVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVS 75

Query: 84  NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
             +  L +    F   P +KPIIAA+ G+A+  G +L L CDL     +   G       
Sbjct: 76  G-EAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFG------- 127

Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
                            +P  ++K  L         +      +R L   I     M++ 
Sbjct: 128 -----------------IP--EVKRGL---------VAGAGGLLR-LPNRIPYQVAMELA 158

Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ--SMLADRATVLSECETC 261
             G   TA +A  +G  N++V+ G A+  A+  A +++           R  + S     
Sbjct: 159 LTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAP 218

Query: 262 REEWMSERKHY 272
            E +  + +  
Sbjct: 219 EEAFAKQGEIL 229

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  131 bits (331), Expect = 8e-37
 Identities = 40/246 (16%), Positives = 76/246 (30%), Gaps = 52/246 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I++      N  +   ++ L+        + +  + IL G    F SG     L  
Sbjct: 12  GVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIR 71

Query: 84  --NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
               + ++ D     L      PIIAA+ G++ G GL L L+ D     +  +       
Sbjct: 72  KTRGEVEVLDLSGLILDCE--IPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYAT---N 126

Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
           F+         G                           P    +   L + +G+    +
Sbjct: 127 FMKY-------GF-------------------------TPVGATS-LILREKLGSELAQE 153

Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--LSQSMLA 249
           MI  G +   +E  + G+   +V+    +  A             ++   K  LS  + A
Sbjct: 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSADIKA 213

Query: 250 DRATVL 255
                +
Sbjct: 214 KFPEAI 219

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  130 bits (329), Expect = 2e-36
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 48/233 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-D 82
            +  ++LNRP   NA++ +        +   ++D +  + I+ G +  FC+G DL EL D
Sbjct: 18  RVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGD 77

Query: 83  ENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRF 142
                 +   + +       KP+I AI G AV  GL+LAL+CD+    EN          
Sbjct: 78  TTELPDISPKWPDM-----TKPVIGAINGAAVTGGLELALYCDILIASENAKFAD---TH 129

Query: 143 VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDM 202
             +       G+                         +PT  +++R L Q +G      M
Sbjct: 130 ARV-------GL-------------------------MPTWGLSVR-LPQKVGVGLARRM 156

Query: 203 ISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
              G +++A++AL  GL  ++V    A  + +T A +++   +  +  A RA 
Sbjct: 157 SLTGDYLSAQDALRAGLVTEVV----AHDDLLTAARRVAASIVGNNQKAVRAL 205

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  129 bits (328), Expect = 5e-36
 Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 50/240 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           +  ++++NRP + NA++ + +  + E   R ++D +    IL G  G FC+G DL    +
Sbjct: 29  HTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATK 88

Query: 84  N--PDTKLFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
               D+     +              KKP+IAA+ G A+  G ++    D+R   E+   
Sbjct: 89  KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKF 148

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G                           ++ K SL          P     +R L + I 
Sbjct: 149 GI--------------------------SEAKWSL---------YPMGGSAVR-LVRQIP 172

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL--SQSMLADRAT 253
            +   D++  GRHITA EA + GL   +V      G+A+T+A++++++  +   LA +A 
Sbjct: 173 YTVACDLLLTGRHITAAEAKEMGLVGHVV----PDGQALTKALEIAEIIAANGPLAVQAI 228

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  129 bits (327), Expect = 5e-36
 Identities = 53/238 (22%), Positives = 86/238 (36%), Gaps = 48/238 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + +I LNRP K NA +   L+ L   +  +E DT+   A+LYG+   F +G DL  +  
Sbjct: 18  YVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAA 77

Query: 84  NPDTKLFDDFREFLQ------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
                        +       +   KP++ A+ G  +  G++LAL  D+   +E      
Sbjct: 78  EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQ 137

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                V         G+                          P    TIR   +  G  
Sbjct: 138 L---EVNR-------GI-------------------------YPFGGATIR-FPRTAGWG 161

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
             M  +       A EA   G+  ++V     VGE +  AI +++    Q+ L  +AT
Sbjct: 162 NAMRWMLTADTFDAVEAHRIGIVQEIV----PVGEHVDTAIAIAQTIARQAPLGVQAT 215

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  128 bits (323), Expect = 7e-36
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 45/235 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I +I ++   K+N +      AL E I   + D      ++ G    F  GFDL  L  
Sbjct: 14  AIGVIRMDDG-KVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTS 71

Query: 84  NPDTKLFDDFREFLQKPAK-----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
                  D  R   +   +     KP++ A TG+A+  G  L    D R       +   
Sbjct: 72  GEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQA- 130

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
               V +       G+    +     +                        L   +  S 
Sbjct: 131 --NEVAI-------GMT---IPYAAME-----------------------VLKLRLTPSA 155

Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
                 L +      AL  G  +++      +  A   A + + L  +  A  AT
Sbjct: 156 YQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGL--NQQAHNAT 208

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  128 bits (324), Expect = 1e-35
 Identities = 50/234 (21%), Positives = 82/234 (35%), Gaps = 48/234 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  ++LNRP+ +NA N    DA  + +    DD +  + +L G    F +G DL E+   
Sbjct: 16  VRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQAR 75

Query: 85  PDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
                F + +   +          KP+I A+ G  VG G  +  + DL F+     +   
Sbjct: 76  ITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKC- 134

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPR---TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
              F  L       GV       P    +                         L Q++G
Sbjct: 135 --PFTSL-------GV------APEAASSY-----------------------LLPQLVG 156

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
                 ++     I A EAL  GL  ++ +    + EA   A  ++    S L 
Sbjct: 157 RQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLM 210

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  128 bits (324), Expect = 1e-35
 Identities = 53/284 (18%), Positives = 97/284 (34%), Gaps = 63/284 (22%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
             ++   +  + N++N + +  +Q  +     D +S L +L      FC G D       
Sbjct: 16  THILLSTKSSENNSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCCGLDFIYFIRR 74

Query: 85  PDTKLFDDFREFLQK---------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
                  +  +  +            KKPII A+ G A+G G  +   CD+ +  E    
Sbjct: 75  LTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWF 134

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
                 +          G                           P    T+    +++G
Sbjct: 135 QT---PYTTF-------GQ-------------------------SPDGCSTVM-FPKIMG 158

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--L 243
            +   +M+  GR +TA+EA   GL +++   GT   E M             ++ SK  +
Sbjct: 159 GASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALV 218

Query: 244 SQSMLADRATVLS-ECETCREEWMSERKHYIGISFELKFLQKKK 286
             +M  +       ECE  ++ W S  +    +    K+LQ+K 
Sbjct: 219 RCNMKMELEQANERECEVLKKIWGSA-QGMDSML---KYLQRKI 258

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  127 bits (322), Expect = 2e-35
 Identities = 38/255 (14%), Positives = 72/255 (28%), Gaps = 51/255 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
               +L+RP+K NA++ + ++AL + +     + + PL +  G   NF +GFD  + +  
Sbjct: 17  AWTFTLSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDFTDYETQ 75

Query: 85  PDTKLFDDFREFLQKPAK-----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
            +  L            +        +A   G   G G+DL   C  R+           
Sbjct: 76  SEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRM-- 133

Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
              +         G+      V  T+                       R   ++G  + 
Sbjct: 134 -PGLKF-------GL------VLGTR-----------------------RFRDIVGADQA 156

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA------DRAT 253
           + ++   R   A EA   G                  A   + L  +  A          
Sbjct: 157 LSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDH 216

Query: 254 VLSECETCREEWMSE 268
             ++           
Sbjct: 217 DDADLAALARSAAQP 231

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  125 bits (317), Expect = 5e-35
 Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 46/235 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  ++LN   K+NAI+   + A    + + E D    + I+ GQ G    G+DL  +  
Sbjct: 15  GVATLTLNNG-KVNAISPDVIIAFNAALDQAEKDRA--IVIVTGQPGILSGGYDLKVMTS 71

Query: 84  NP--DTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRF-VEENVLMGFY 138
           +      L        ++      PII A  G+AV +G  L L  D R  V     +G  
Sbjct: 72  SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGL- 130

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
               V +       G+    +H    +                            +  S 
Sbjct: 131 --NEVQI-------GMT---MHHAGIE-----------------------LARDRLRKSA 155

Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
               +          A+  G  +K+V+     G A+  A Q+ K+  +M A + T
Sbjct: 156 FNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKI--NMNAHKKT 208

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  126 bits (320), Expect = 7e-35
 Identities = 55/253 (21%), Positives = 90/253 (35%), Gaps = 58/253 (22%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL--- 81
           +  ++L RPDK+NA+  +    L++ +            +L G+   FCSG D+ E+   
Sbjct: 27  VATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGA 86

Query: 82  DENPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
             + DT    DF     +  +       P+IAA+ G A G G  LAL  D R  + +   
Sbjct: 87  TLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRF 146

Query: 136 GF-YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
            F + R  +   D   +     Y L  PR                             ++
Sbjct: 147 AFLFTRVGLSGGDMGAA-----YLL--PR-----------------------------VV 170

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK-- 242
           G      ++ LG  + A EA   GL +++   G A   A             A   +K  
Sbjct: 171 GLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKAL 230

Query: 243 LSQSMLADRATVL 255
           L+  +    A  +
Sbjct: 231 LTAELDMPLAAAV 243

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  126 bits (318), Expect = 1e-34
 Identities = 59/291 (20%), Positives = 97/291 (33%), Gaps = 73/291 (25%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            IT I  NRP K NAIN +    +   +K    D +S + +L G    + SG DL    +
Sbjct: 35  GITKIMFNRPKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTD 93

Query: 84  NPDT-------KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN-- 132
            P               REF+       KP+IA + G AVG  + L    D  +  +   
Sbjct: 94  IPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRAT 153

Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYA---LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRR 189
               F +             G           P+                          
Sbjct: 154 FHTPFSHL------------GQSPEGCSSYTFPK-------------------------- 175

Query: 190 LGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQ 239
              ++  ++  +M+  G+ +TA EA   GL  ++    T   E              A++
Sbjct: 176 ---IMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR 232

Query: 240 MSK--LSQSMLADRATVLS-ECETCREEWMSERKHYIGISFELKFLQKKKK 287
           +SK  + +        V + EC   +  W+S+ +    +     FL +K K
Sbjct: 233 ISKEVIRKREREKLHAVNAEECNVLQGRWLSD-ECTNAVV---NFLSRKSK 279

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  126 bits (318), Expect = 1e-34
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 59/280 (21%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  +++NRP+  NA+  +    + + +   + + +  + +L G E +F +G D+ +    
Sbjct: 15  VLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGF 74

Query: 85  PDTKLFDDFREFLQKP-------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
                     +              KP+I A+ G A+G G+ + L  DL F +   L   
Sbjct: 75  VQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQI 134

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPR---TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
               FV L       G+       P    +Q                        L +  
Sbjct: 135 ---PFVSL-------GL------SPEGGASQ-----------------------LLVKQA 155

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS-QSMLADRAT 253
           G  +  +++   +   A  AL  GL N++V    A   A   A  ++ L   S+   +A 
Sbjct: 156 GYHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLKQTKAL 213

Query: 254 VLSECETCREEWMSERK--HYIGISFELK-----FLQKKK 286
           +  + +   E    E +       S E+      F+QK++
Sbjct: 214 MKHDLDQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQ 253

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  124 bits (313), Expect = 6e-34
 Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 47/232 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I L RP++ NA+N + ++ L + I++  D +   + +L GQ   FC+G DL     
Sbjct: 30  AVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAI-VLTGQGTAFCAGADLSGDAF 88

Query: 84  NPDT--KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRR 141
             D   +L +  +     P   P++ AI G A+G GL LA+ CDLR V  +    F    
Sbjct: 89  AADYPDRLIELHKAMDASP--MPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQF---P 143

Query: 142 FVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMD 201
                      G+                                 RRL  ++G  R   
Sbjct: 144 TSKY-------GL-------------------------ALDNWSI-RRLSSLVGHGRARA 170

Query: 202 MISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
           M+     +TA  AL  G+ N++      + +A   A +++    + LA +  
Sbjct: 171 MLLSAEKLTAEIALHTGMANRIG----TLADAQAWAAEIA--RLAPLAIQHA 216

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  123 bits (311), Expect = 8e-34
 Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 50/236 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
            + +I+L+ P+K N  +     ++++ + R   D      ++YG  E +F +G D +E+ 
Sbjct: 9   EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVK 68

Query: 83  ENPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
           +   ++  +++ + +           KP IAA+ GYA+G G   AL  D R +       
Sbjct: 69  QLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFV 128

Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVP---RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
                 +         G+              L                           
Sbjct: 129 M---PELKH-------GI------GCSVGAAIL---------------------GFT--- 148

Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
            G S   ++I   + + A   +D+ L N++V     +  A+T+A  M+    S   
Sbjct: 149 HGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI 204

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  123 bits (311), Expect = 8e-34
 Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 60/252 (23%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  ++LNRPD++NA   +    + + +K+   D      ++ G    FC+G DL  + E
Sbjct: 12  QVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTE 71

Query: 84  NPDTKLFDDFREFLQKPAK------KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG- 136
             D    D  R       K      KP++AA+ G A G G+ LAL CD R + E      
Sbjct: 72  EMD--HGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129

Query: 137 -FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
            F +             G+                         +P        L +++G
Sbjct: 130 AFIHV------------GL-------------------------VPDAGHLYY-LPRLVG 151

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--L 243
            ++ +++  LG  +TA EA   GL  K++       E            T+AI + K  L
Sbjct: 152 RAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLL 211

Query: 244 SQSMLADRATVL 255
            +S        L
Sbjct: 212 RESEETTFDRYL 223

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  123 bits (311), Expect = 1e-33
 Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 46/236 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I++  P   NA+++K +  + + + R E+D      ++ G E  FC+GF L E+  
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71

Query: 84  NPDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           +       D                   K+P++AAI G A G GL ++L  D+    ++ 
Sbjct: 72  DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131

Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
                   +  +       G+                               +   L ++
Sbjct: 132 KFVC---AWHTI-------GI-------------------------GNDTATSYS-LARI 155

Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           +G  R M+++   R +   EA DWGL +++         A   A +++     +  
Sbjct: 156 VGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV 211

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  123 bits (312), Expect = 1e-33
 Identities = 53/288 (18%), Positives = 95/288 (32%), Gaps = 63/288 (21%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
             ++   R  + NA+N + +  +   +     D +S L +       FC G D     ++
Sbjct: 34  TQIVLSTRSTEKNALNTEVIKEIVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVKH 92

Query: 85  P-------DTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
                     ++ D  + F+      KKPI+ ++ G A+G G  +   CDL +  E    
Sbjct: 93  LRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWF 152

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
                 +          G                           P    +I    +M+G
Sbjct: 153 QT---PYTTF-------GQ-------------------------SPDGCSSIT-FPKMMG 176

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--L 243
            +   +M+  GR +TAREA   GL +++   GT   E M             ++  K  +
Sbjct: 177 KASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALV 236

Query: 244 SQSMLADRATVLS-ECETCREEWMSE-RKHYIGISFELK---FLQKKK 286
             ++  +       ECE  R+ W S      +     L        +K
Sbjct: 237 RCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRK 284

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  122 bits (309), Expect = 2e-33
 Identities = 52/255 (20%), Positives = 86/255 (33%), Gaps = 59/255 (23%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
           +   I+L+ P+K N ++ +   +L E I+   ++T     IL  +    F SG  L +L 
Sbjct: 13  DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLL 72

Query: 83  ENPDTKLFDDFREFLQK--PA-------KKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
                +     RE L              K  +A I GYA G G ++ L CD R      
Sbjct: 73  ICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRA 132

Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
                   F  +       G+                          P    +   L ++
Sbjct: 133 KFLE---NFHKM-------GI-------------------------SPDLGASYF-LPRI 156

Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM-----------TRAIQMSK 242
           IG  +TM+++  G+  T+ EAL  GL  ++      + E +             AI  +K
Sbjct: 157 IGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATK 216

Query: 243 --LSQSMLADRATVL 255
             L      +    L
Sbjct: 217 KLLKGKAAEELKQQL 231

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  121 bits (307), Expect = 3e-33
 Identities = 57/245 (23%), Positives = 87/245 (35%), Gaps = 53/245 (21%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  I L+RP+K+NA++   L+ L  +I+  E D      +L G    FCSG DL   D  
Sbjct: 16  VLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA 75

Query: 85  PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV--LMGFYNRRF 142
                 +     +     KP+IA + G AVG G  LAL CDL          + F     
Sbjct: 76  GAADAANRVVRAITS-LPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRV-- 132

Query: 143 VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDM 202
                     G+                         +P    +   L  +IG +RT  M
Sbjct: 133 ----------GL-------------------------MPDGGASAL-LPLLIGRARTSRM 156

Query: 203 ISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--LSQSMLAD 250
                 I+A  A +WG+ + + +                   T A   +K  L+ + LA+
Sbjct: 157 AMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAE 216

Query: 251 RATVL 255
              V 
Sbjct: 217 LEPVQ 221

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  122 bits (308), Expect = 4e-33
 Identities = 56/297 (18%), Positives = 100/297 (33%), Gaps = 80/297 (26%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I L++LNRP+++NA+    +   ++ +     D +    ++ G    FCSG D      
Sbjct: 33  EIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGP 92

Query: 84  NPDTKLFDD------FREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
            P               E L +         +P+IAAI G A+G GL LAL CD+R   +
Sbjct: 93  IPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152

Query: 132 NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR----TQLKHSLRDNLSRDLAIPTCDVTI 187
           +          +         G+             +                       
Sbjct: 153 DAYFRA---AGINN-------GL------TASELGLSY---------------------- 174

Query: 188 RRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRA 237
             L + IGTSR  D++  GR + A EA   GL ++ V   + + E               
Sbjct: 175 -LLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPG 233

Query: 238 IQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELK--------FLQKKK 286
           I+++K  +++        +  E+   +   E    + +               +K+ 
Sbjct: 234 IELTK--RTI--WSGLDAASLESHMHQ---EGLGQLYVRLLTDNFEEATAARKEKRP 283

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  121 bits (305), Expect = 7e-33
 Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 41/232 (17%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + LI L+RPD +NA+N      + +  + F+ D E    ++ G E  F +G D+ E+  
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVT 78

Query: 84  N--PDTKLFDDFREFLQ-KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
                 +  +    +      +KPI+AA+ GYA+G G +LA+ CDL    +    G    
Sbjct: 79  LTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQ--- 135

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
                                P   L             +P    T R L + +G ++ M
Sbjct: 136 ---------------------PEITLG-----------ILPGLGGTQR-LTRAVGKAKAM 162

Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRA 252
           D+   GR +TA EA   GL +++V     + EA+  A +++    S  A RA
Sbjct: 163 DLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIA--RMSRPAGRA 212

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  121 bits (305), Expect = 7e-33
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 39/225 (17%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + +I L RPD +NA++ + +  +   ++ F+ + +  + +L G+   F +G D+ E+ +
Sbjct: 14  AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK 73

Query: 84  N--PDTKLFDDFREFLQ-KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
           +     +  + F ++ +    K P+IAA+ G A+G G +LAL CDL         GF   
Sbjct: 74  DDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGF--- 130

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
                                P   L             +P    T R L ++IG  R +
Sbjct: 131 ---------------------PEVNLG-----------VMPGAGGTQR-LTKLIGPKRAL 157

Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
           + +  G  ++A+EA   G+ N++V+    + E M  A ++++   
Sbjct: 158 EWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPP 202

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  121 bits (305), Expect = 1e-32
 Identities = 43/302 (14%), Positives = 87/302 (28%), Gaps = 76/302 (25%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-- 81
              +I L  PD +NA+  +    L E ++  + + +    I+      F SG D   +  
Sbjct: 18  PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAK 77

Query: 82  -----DENPDTKLFDDFREFLQKPA---------KKPIIAAITGYAVGQGLDLALWCDLR 127
                     ++       F+ +            K +I  + G A+G    L   CD+ 
Sbjct: 78  AQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIV 137

Query: 128 F-VEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
           + + + V + +    F  L       G++                              T
Sbjct: 138 YSINDKVYLLY---PFANL-------GLI-------------------------TEGGTT 162

Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM------------ 234
           +  L    GT+ T + +   +        + G  +K  N  ++  EA             
Sbjct: 163 V-SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKV 221

Query: 235 ----TRAIQMSK--LSQSMLADRATVLS-ECETCREEWMSERKHYIGISFELKFLQKKKK 287
                 +    K  L  + +       S E     + W+             +   K++K
Sbjct: 222 KGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGE-PLKRFR---QLGSKQRK 277

Query: 288 AK 289
            +
Sbjct: 278 HR 279

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  120 bits (303), Expect = 2e-32
 Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 69/295 (23%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I LNRP K NA+N   + AL++ +    D   +   +++G   +F +G DL EL E
Sbjct: 25  PVLTIGLNRPKKRNALNDGLMAALKDCLTDIPDQIRA--VVIHGIGDHFSAGLDLSELRE 82

Query: 84  ----------NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
                         ++FD  +       + P+IAA+ G  +G GL+LA    +R  E + 
Sbjct: 83  RDATEGLVHSQTWHRVFDKIQYC-----RVPVIAALKGAVIGGGLELACAAHIRVAEASA 137

Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
                                       P                       ++R L ++
Sbjct: 138 YYAL------------------------PEGSRG-----------IFVGGGGSVR-LPRL 161

Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRA- 252
           IG +R  DM+  GR  +A E +  G    ++  G+A  +A+    +++    + L + A 
Sbjct: 162 IGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVA--QNAPLTNFAV 219

Query: 253 --TVLSECETCREEWMS-ERKHYIGISFELK--------FLQKKK-KAKNGHLVH 295
              +    E   +  +  E      ++   +        FL  K  K + GH  H
Sbjct: 220 LQALPMIAEANPQTGLLMESLMA-TVAQSDQEAKTRIRAFLDHKTAKVREGHHHH 273

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  119 bits (302), Expect = 2e-32
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 39/225 (17%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-D 82
           ++ LI LNRP  +NA+    ++ L + ++ FE+D      +L G E  F +G D+ E+ +
Sbjct: 16  SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQN 75

Query: 83  ENPDTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
                     F          KKP+IAA+ GYA+G G +LA+ CD+ +  E    G    
Sbjct: 76  RTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQ--- 132

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
                                P   L             IP    T R L + +G S  M
Sbjct: 133 ---------------------PEILLG-----------TIPGAGGTQR-LTRAVGKSLAM 159

Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
           +M+  G  I+A++A   GL +K+    T V EA+  A +++  S+
Sbjct: 160 EMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSK 204

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  120 bits (303), Expect = 2e-32
 Identities = 56/237 (23%), Positives = 92/237 (38%), Gaps = 44/237 (18%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
            I ++ +NR    N+++   +  L + +   + D +    I+  +  G FC+G DL E  
Sbjct: 21  GIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERA 80

Query: 83  ENPDT---KLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
           +   +         R  +   A    P IAAI G A+G GL+LAL CD+R    +  MG 
Sbjct: 81  KMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGL 140

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                                     T+L             IP    T R L + IG S
Sbjct: 141 ------------------------VETKLA-----------IIPGGGGTQR-LPRAIGMS 164

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
              ++I   R +  +EA   GL + ++        A  +A+ +++  L Q  +A R 
Sbjct: 165 LAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRV 221

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  120 bits (303), Expect = 2e-32
 Identities = 48/239 (20%), Positives = 83/239 (34%), Gaps = 51/239 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + +I+LNRPD +N++N      L    +R  DD  +  A++ G    F +G D   L E
Sbjct: 37  ALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKE 96

Query: 84  -NPDTKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
            + D  L        ++        + P++AA+ G AVG G  L    D+ ++ EN  + 
Sbjct: 97  LSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLA 156

Query: 137 FYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                 V +       G+                         +      +      I  
Sbjct: 157 D---PHVQV-------GL-------------------------VAADGGPLT-WPLHISL 180

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM-SKL-SQSMLADRAT 253
               +    G  I+A+ A++ GL N          + +  AI    K+      A  +T
Sbjct: 181 LLAKEYALTGTRISAQRAVELGLANH------VADDPVAEAIACAKKILELPQQAVEST 233

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  119 bits (301), Expect = 2e-32
 Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 53/250 (21%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + L++++   K         D L         D E+ + IL G   +FC+  D    +  
Sbjct: 26  VLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG 85

Query: 85  PDTKLFDDFREFLQKPAK-----KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYN 139
                 +   E  +          P+IAA+ G       ++ +  D+    E+      +
Sbjct: 86  TPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQ--D 142

Query: 140 RRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT 199
                        G+                         +P     +     ++G++R 
Sbjct: 143 GPHFPS-------GI-------------------------VPGDGAHV-VWPHVLGSNRG 169

Query: 200 MDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK--LSQSM 247
              +  G+ + AR ALD+G  N++++    +  A             A + ++  L++ +
Sbjct: 170 RYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTRQL 229

Query: 248 LADRATVLSE 257
                  LS 
Sbjct: 230 RRVMEADLSL 239

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  119 bits (302), Expect = 3e-32
 Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 39/225 (17%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL-D 82
            + +I+LNRP  +NA+N + ++ +       +DD +    I+ G    F +G D+ E+ D
Sbjct: 34  RVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMAD 93

Query: 83  ENPDTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
                    DF     K A  + P IAA+ GYA+G G +LA+ CD+    +    G    
Sbjct: 94  LTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQ--- 150

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
                                P  +L             +P    + R L + IG ++ M
Sbjct: 151 ---------------------PEIKLG-----------VLPGMGGSQR-LTRAIGKAKAM 177

Query: 201 DMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
           D+I  GR + A EA   GL +++V     + EA   A  +S++S 
Sbjct: 178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSA 222

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  119 bits (300), Expect = 4e-32
 Identities = 45/237 (18%), Positives = 73/237 (30%), Gaps = 49/237 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHEL 81
            + +I  N   K+NA++   +D L + +       E    IL    G+  F +G D+HEL
Sbjct: 13  KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSAGHDIHEL 71

Query: 82  DENP--DTKLFDDFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
                      D  R+  +      KPII+ + G   G   ++ +  DL           
Sbjct: 72  PSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM 131

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                                       L                       L +  G  
Sbjct: 132 ------------------------TPVNLG-----------VPYNLVGIHN-LTRDAGFH 155

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
              ++I     ITA+ AL  G+ N +V     V E     +QM+     ++ LA   
Sbjct: 156 IVKELIFTASPITAQRALAVGILNHVV----EVEELEDFTLQMAHHISEKAPLAIAV 208

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  118 bits (299), Expect = 5e-32
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 43/228 (18%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           +I + +LN     NA++ + +  + E I + E D    + +++G+   F +G D+ E   
Sbjct: 15  HIAVATLNHA-PANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73

Query: 84  NPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
             + K   +  +  Q          KP+IAAI G A+G GL+ A+ C +RF  E+  +G 
Sbjct: 74  VTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGL 133

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                                   P   L             IP    T R L + +G +
Sbjct: 134 ------------------------PELTLG-----------LIPGFAGTQR-LPRYVGKA 157

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
           +  +M+     IT  EAL WGL N +    T + + +  A Q++  S 
Sbjct: 158 KACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSP 205

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  118 bits (299), Expect = 8e-32
 Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 52/242 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I  + LNRP+K NA++      + + ++  E D  + + +L G    + +G DL E   
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77

Query: 84  NPDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
             D        +  ++ +           KP IA + G+  G G    + CDL    +  
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137

Query: 134 LMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
             G               S +                  N       P   V+ + +   
Sbjct: 138 TFGL--------------SEI------------------NWG---IPPGNLVS-KAMADT 161

Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADR 251
           +G  +++  I  G+    ++A + GL N+ V     + +     I++++  L ++ +  R
Sbjct: 162 VGHRQSLMYIMTGKTFGGQKAAEMGLVNESV----PLAQLREVTIELARNLLEKNPVVLR 217

Query: 252 AT 253
           A 
Sbjct: 218 AA 219

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  118 bits (298), Expect = 9e-32
 Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 48/237 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I  + ++          KT     +       D ++ + IL G    + +  D   L + 
Sbjct: 34  ILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDV 93

Query: 85  PDTKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
            + + +D      +K        + P+I+A+ G A+    +  L  D+    EN +  F 
Sbjct: 94  TNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENTV--FQ 150

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
           +   +         G+                         +P   V I      +G  R
Sbjct: 151 DMPHLNA-------GI-------------------------VPGDGVHI-LWPLALGLYR 177

Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
               +     +TA++A +  + ++++       + M RA ++++    Q  L  R T
Sbjct: 178 GRYFLFTQEKLTAQQAYELNVVHEVL----PQSKLMERAWEIARTLAKQPTLNLRYT 230

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  117 bits (297), Expect = 1e-31
 Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 52/239 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
           ++  ISLNR  + N+++L  L+ LQ  + +  ++  + + IL G  E  FC+G DL E  
Sbjct: 18  HVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERA 77

Query: 83  ENPDT-------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
              +         +        Q P  +P+IAAI G A+G G +L+L CD R   E+  +
Sbjct: 78  GMNEEQVRHAVSMIRTTMEMVEQLP--QPVIAAINGIALGGGTELSLACDFRIAAESASL 135

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G                           T L             IP    T R L ++IG
Sbjct: 136 GL------------------------TETTLA-----------IIPGAGGTQR-LPRLIG 159

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
             R  ++I  GR I+A+EA ++GL   +V     V     +AI++++   S   +A R 
Sbjct: 160 VGRAKELIYTGRRISAQEAKEYGLVEFVV----PVHLLEEKAIEIAEKIASNGPIAVRL 214

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  118 bits (297), Expect = 1e-31
 Identities = 49/239 (20%), Positives = 77/239 (32%), Gaps = 50/239 (20%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I  I+LNRP+  NA N + LD L     R  +D +  + +L     +F +G DL      
Sbjct: 30  IATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPV 89

Query: 85  PDTKLFDDFREFLQKPA----------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
           PD    +       +             KP IAA+ G  +  GL L   CDL    E+ L
Sbjct: 90  PDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDAL 149

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
                       D ++   +                                       +
Sbjct: 150 FS----------DPVVLMDIGGVE-----YH-----------------------GHTWEL 171

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRAT 253
           G  +  +++  GR +TA E    G+ N++V       E    A ++        A R  
Sbjct: 172 GPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEI--AKMPPFALRQA 228

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  117 bits (296), Expect = 2e-31
 Identities = 54/234 (23%), Positives = 82/234 (35%), Gaps = 44/234 (18%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  + ++RP   NA+  +    +           +    +L+G    F +G D+ EL  
Sbjct: 33  GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRT 91

Query: 84  N--PDTKLFD-DFREFLQKPA--KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY 138
              P+         E +   A   KP +AA+TGYA+G GL LAL  D R   +NV  G  
Sbjct: 92  LNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGA- 150

Query: 139 NRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSR 198
                                                    IP      R L +++G+SR
Sbjct: 151 -----------------------TEILAG-----------LIPGGGGMGR-LTRVVGSSR 175

Query: 199 TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLADRA 252
             +++  GR   A EAL  GL + MV        A+  A +         A  A
Sbjct: 176 AKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYL--ECPPRALAA 227

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  117 bits (295), Expect = 5e-31
 Identities = 53/258 (20%), Positives = 86/258 (33%), Gaps = 64/258 (24%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + +I+ NR D++NA            I R E D    + +L G+   FC+G  L   D  
Sbjct: 40  VAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAA 99

Query: 85  PD-------TKLFDDFREFLQKPA------KKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
                     K  +      ++P       +KP+IAAI G  VG GL  AL CD+RF   
Sbjct: 100 AGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAA 159

Query: 132 NVLMGF-YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRL 190
                  + RR           G+                         I    ++   L
Sbjct: 160 GAKFAAVFARR-----------GL-------------------------IAEFGISW-IL 182

Query: 191 GQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM-----------TRAIQ 239
            ++   +  +D++  GR   A EA   GL  ++V     +  A+             ++ 
Sbjct: 183 PRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMA 242

Query: 240 MSK--LSQSMLADRATVL 255
           + K  +      D     
Sbjct: 243 VIKRQVYGDATRDVVEAT 260

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  116 bits (292), Expect = 6e-31
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 54/235 (22%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  + L+ P  +N++  +    L +     + D +  + ++ G+   F SG     +DE 
Sbjct: 24  VLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDET 82

Query: 85  PDT-----KLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
                   ++  + R+ +       KP+++AI G AVG GL +AL  D+        +  
Sbjct: 83  IGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIID 142

Query: 138 YNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTS 197
                  L       GV                                I     ++G +
Sbjct: 143 ---GHTKL-------GV-------------------------AAGDHAAI-CWPLLVGMA 166

Query: 198 RTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK 242
           +    +     ++  EA   GL +  V+    +  A             AI+ +K
Sbjct: 167 KAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTK 221

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  115 bits (291), Expect = 1e-30
 Identities = 46/257 (17%), Positives = 83/257 (32%), Gaps = 59/257 (22%)

Query: 22  ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL 81
           +L IT     R +K+NA+       L    +  E        +L G+ G F +G     +
Sbjct: 21  VLEITF----RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLI 76

Query: 82  DENPDT-----KLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
           +E   +     ++F + R+ +  P    +P++AA+   AVG GL LAL  D+  V +   
Sbjct: 77  EEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTR 136

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
           +       + L       GV                                +     ++
Sbjct: 137 LLD---GHLRL-------GV-------------------------AAGDHAVL-LWPLLV 160

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAM----------TRAIQMSK-- 242
           G ++    + L   +T  EA   GL    V       +A+            A+  +K  
Sbjct: 161 GMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHA 220

Query: 243 LSQSMLADRATVLSECE 259
           L+    +          
Sbjct: 221 LNHWYRSFLPHFELSLA 237

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  111 bits (279), Expect = 4e-29
 Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 49/237 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  ++L R    + ++   + AL + ++R   D    + +++G    FC+G DL E+  
Sbjct: 16  GVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGR 74

Query: 84  N--PDTKLFDDFREFLQKPAK---------KPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
           +     +      +  +  +          KP IA + G A   GL L   CDL +    
Sbjct: 75  HRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPA 134

Query: 133 VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ 192
                               GV                           T       + +
Sbjct: 135 ARFCL--------------PGV------------------QNG---GFCTTPAV--AVSR 157

Query: 193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
           +IG     +M   G    A  AL  GL N+++            A  ++  +Q+ L 
Sbjct: 158 VIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLR 214

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  110 bits (278), Expect = 6e-29
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 53/241 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
            + ++    P  +N+++L+ L  L  ++++ E+D      IL     G F +G DL E+ 
Sbjct: 14  GVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEM- 71

Query: 83  ENPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VL 134
                  +  + + +Q+       +   +++AI G     G  +AL CD R + +N    
Sbjct: 72  CGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 131

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
           +G                           TQL             I    +    L   I
Sbjct: 132 IGL------------------------NETQLG-----------IIAPFWLKDT-LENTI 155

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRA 252
           G       + LG      EAL  G+ +++V       +  + A+      ++    A + 
Sbjct: 156 GHRAAERALQLGLLFPPAEALQVGIVDQVV----PEEQVQSTALSAIAQWMAIPDHARQL 211

Query: 253 T 253
           T
Sbjct: 212 T 212

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  110 bits (276), Expect = 2e-28
 Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 45/233 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            I  I L+ P K N ++L  L +LQ +I    D  +  + I+  +   F SG DL EL E
Sbjct: 42  GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTE 101

Query: 84  NPD----TKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
                   ++F    + +        P+IA + G A   G  L   CD+    +      
Sbjct: 102 EQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFA- 160

Query: 138 YNRRFVYLKDSLLSSGVVLYAL-HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                        + GV +      P           L+R                 +  
Sbjct: 161 -------------TPGVNVGLFCSTPGVA--------LAR----------------AVPR 183

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
              ++M+  G  I+A+EAL  GL +K+V       E M  A +++ LS+ +++
Sbjct: 184 KVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS 236

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  108 bits (272), Expect = 1e-27
 Identities = 47/261 (18%), Positives = 77/261 (29%), Gaps = 76/261 (29%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  I+ NRP+K NAI   T   L   ++R + D +  + ++ G+   FC+GFDL    E 
Sbjct: 45  VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEG 104

Query: 85  PDTKLFDDFREFLQKPAK-----------------------------------KPIIAAI 109
             +       E      K                                   KP +  I
Sbjct: 105 SSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKI 164

Query: 110 TGYAVGQGLDLALWCDLRFVEENVLMGF-YNRRFVYLKDSLLSSGVVLYALHVPRTQLKH 168
            GY V  G D+AL  D      +  +G+   R              V  A          
Sbjct: 165 HGYCVAGGTDIALHADQVIAAADAKIGYPPMRV-----------WGVPAAGLWAH----- 208

Query: 169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGT 228
                                    +G  R   ++  G  IT  +A +WGL  +  +   
Sbjct: 209 ------------------------RLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPAD 244

Query: 229 AVGEAMTRAIQMSKLSQSMLA 249
                     +++ +  + L 
Sbjct: 245 LDARTERLVERIAAMPVNQLI 265

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  108 bits (271), Expect = 1e-27
 Identities = 44/277 (15%), Positives = 81/277 (29%), Gaps = 57/277 (20%)

Query: 24  NITLISLNRPDKIN----AINLKTLDALQENIKRFE-----DDTESPLAILYGQEGNFCS 74
           ++  I ++    IN      + + +D +                 +P  +L      F  
Sbjct: 41  DVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNL 100

Query: 75  GFDLHELDENPDTKLFDDFREFLQK------------PAKKPIIAAITGYAVGQGLDLAL 122
           G DL    +           ++ Q+             A+   IA + G A+G G + AL
Sbjct: 101 GGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAAL 160

Query: 123 WCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPT 182
            C     EE V+MG                         P          +L      P 
Sbjct: 161 SCHTIIAEEGVMMGL------------------------PEVLF------DL-----FPG 185

Query: 183 CDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
                  + Q I       ++  G   +A + L  GL +++V  G  V        +  +
Sbjct: 186 MGAYSF-MCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR 244

Query: 243 LSQSMLADRATVLSECETCREEWMSERKHYIGISFEL 279
              +  A +           EE M   + ++  + +L
Sbjct: 245 TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQL 281

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  107 bits (269), Expect = 2e-27
 Identities = 35/248 (14%), Positives = 68/248 (27%), Gaps = 61/248 (24%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
            +  I L+ P  +N I    +  L+  +    DD+   + +        F +  D+   +
Sbjct: 18  GVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGE 76

Query: 83  E---------------NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLR 127
           +               N    + +  R        +  I  + G A G G +     D+ 
Sbjct: 77  KMDALQELAASAPADVNVFQAVGELIRHQ-----PQVTIVKLAGKARGGGAEFVAAADMA 131

Query: 128 FV-EENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVT 186
           F   E   +G                             +             IP    T
Sbjct: 132 FAAAETAGLGQ------------------------IEALMG-----------IIPGGGGT 156

Query: 187 IRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS 246
              L   +G +R ++++       A  A  +G  N+ +            A  ++ L   
Sbjct: 157 QY-LRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDG 215

Query: 247 --MLADRA 252
               A R+
Sbjct: 216 VIEAAKRS 223

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  106 bits (266), Expect = 5e-27
 Identities = 46/233 (19%), Positives = 76/233 (32%), Gaps = 45/233 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  ++LNRP   NA++   L AL E      +D      +L      FC+G DL E+  
Sbjct: 35  GVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA 94

Query: 84  NPDTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF 137
            P  + ++                  P+IA + G A   G  L   CDL     +     
Sbjct: 95  EPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAV 154

Query: 138 YNRRFVYLKDSLLSSGVVLYAL-HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT 196
                         SG+ +      P           LSR                 +G 
Sbjct: 155 --------------SGINVGLFCSTPGVA--------LSR----------------NVGR 176

Query: 197 SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
               +M+  G  ++A +A   GL N++V       E      ++    ++ +A
Sbjct: 177 KAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA 229

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  105 bits (264), Expect = 9e-27
 Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 58/249 (23%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++  + LNRP+K NA+N      L E  ++   D++    ++ G    F SG DL ++  
Sbjct: 13  HVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMAS 72

Query: 84  NPDTKLFDD-------FREFLQKP---------AKKPIIAAITGYAVGQGLDLALWCDLR 127
           +      DD        R+ + +            KP+IAAI G  +G G+DL   CD+R
Sbjct: 73  DILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIR 132

Query: 128 FVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDV-T 186
           +  ++                            V               D+ +   DV T
Sbjct: 133 YCTQDAFFQ------------------------VKEV------------DVGL-AADVGT 155

Query: 187 IRRLGQMIGT-SRTMDMISLGRHITAREALDWGLCNKMV-NCGTAVGEAMTRAIQMSKLS 244
           ++RL ++IG  S   ++    R + A EALD GL +++  +    +  A   A  +S  S
Sbjct: 156 LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADIS--S 213

Query: 245 QSMLADRAT 253
           +S +A + +
Sbjct: 214 KSPVAVQGS 222

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  105 bits (263), Expect = 2e-26
 Identities = 43/255 (16%), Positives = 70/255 (27%), Gaps = 66/255 (25%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG-------QEGNFCSGFD 77
              ++ NRP+  NA    T+D L   +       +  + +L G           FCSG D
Sbjct: 67  TVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGD 126

Query: 78  LHELDENPDTKLFDDFREFLQKPAK----------------KPIIAAITGYAVGQGLDLA 121
                 +       D  + +                     K +I  + G+A G G  L 
Sbjct: 127 QRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLH 186

Query: 122 LWCDLRFV-EENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAI 180
           + CDL     E                    +                        D+  
Sbjct: 187 VVCDLTLASREYARFKQ--------------TDA----------------------DVGS 210

Query: 181 PTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM 240
                    L + +G     ++  LGR  TA +    G  N +        E  T  +Q 
Sbjct: 211 FDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVA----EHAELETVGLQW 266

Query: 241 SK--LSQSMLADRAT 253
           +    ++S  A R  
Sbjct: 267 AAEINAKSPQAQRML 281

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  101 bits (254), Expect = 2e-25
 Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 53/240 (22%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           + L+++NR  K NA + + L  ++  +    +DT   + +L     +F +G DL  +   
Sbjct: 14  VGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSM 73

Query: 85  PDTKLFDDFREFLQKPAK---------KPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
            +    ++  E                KP IA + G A G G  LA  CD+     +   
Sbjct: 74  ANFT-EEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARF 132

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
            F              S V                       L +    V    + + IG
Sbjct: 133 CF--------------SEV----------------------KLGL-IPAVISPYVVRAIG 155

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADRAT 253
                 +        A  A    L    V         +   ++ +    + +  A + +
Sbjct: 156 ERAAKMLFMSAEVFDATRAYSLNLVQHCV----PDDTLLEFTLKYASQISNNAPEAVKNS 211

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 98.4 bits (246), Expect = 2e-24
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + ++++NRP + NA++   +          + D     AIL G    +C G DL +   
Sbjct: 18  PVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWM 77

Query: 84  NPDTKLFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
             D          + K         KP+IAA+ G  +G G ++    D+R  +E+   G
Sbjct: 78  VRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFG 136

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
           RL + I  ++ M+MI  G  +TA EA  +GL   +V  GTA+ +A + A ++       L
Sbjct: 153 RLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIV--RNGPL 210

Query: 249 ADRAT 253
           A R  
Sbjct: 211 AVRNA 215

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  101 bits (254), Expect = 3e-24
 Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 71/303 (23%)

Query: 24  NITLISLNRPD----------KINAINLKTLDALQENIKRFE-DDTESPLAILYGQ-EGN 71
            +  + ++  +          K+N+ +L     L + I+R   +  E    +L    +  
Sbjct: 30  PVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRV 89

Query: 72  FCSGFDLHELDENPDTKLFDDFREFLQ----------KPAKKPIIAAITGYAVGQGLDLA 121
           FCSG ++  L  +       +F +F            + +    +AA+ G   G G +LA
Sbjct: 90  FCSGANIFMLGLS-THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELA 148

Query: 122 LWCDLRFV--EENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLA 179
           L CD  ++  + +  +                          P   L           L 
Sbjct: 149 LACDEIYLVDDRSSSVSL------------------------PEVPL-----------LG 173

Query: 180 IPTCDVTIRRLGQ--MIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA 237
           +      + R+     +   R     ++   +    A  W L +++V           RA
Sbjct: 174 VLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARA 233

Query: 238 IQMSKLSQSMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKN-GHLVHR 296
           ++++  +QS     A  +          +       G++++   +   +  +        
Sbjct: 234 LELA--AQSDRPAHAQGVP------LTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKA 285

Query: 297 PFP 299
           P  
Sbjct: 286 PQT 288

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 98.5 bits (246), Expect = 3e-24
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 49/223 (21%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           +  I+ +RP+  N IN   ++   + + + E  T + + +L G    FC G D  E+ + 
Sbjct: 17  VCYITFHRPEANNTINDTLIEECLQVLNQCETSTVTVV-VLEGLPEVFCFGADFQEIYQE 75

Query: 85  PDT---------KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
                        L+D + +    P     I+ + G     GL      D+   ++    
Sbjct: 76  MKRGRKQASSQEPLYDLWMKLQTGP--YVTISHVRGKVNAGGLGFVSATDIAIADQTASF 133

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
                  +         G+                                +  L + IG
Sbjct: 134 SL---SELLF-------GLY---------------------------PACVLPFLIRRIG 156

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238
             +   M  + + I+ +EA +WGL +        +       +
Sbjct: 157 RQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKHLLRL 199

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
           N+ +I++NRP+  NAIN      + + ++  + D E    +L G  + +FC+G DL  + 
Sbjct: 18  NVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIA 77

Query: 83  --ENPDTKLFDD--FREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG 136
             EN       +  F  +++    KP IAA+ G A+G G +LAL  DL   +E    G
Sbjct: 78  RRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFG 135

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
           R+ + +     M ++  G  ++A  A DWGL N++V      G  +  A+ ++      +
Sbjct: 152 RIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV----EAGSVLDAALALASAITVNA 207

Query: 247 MLADRAT 253
            L+ +A+
Sbjct: 208 PLSVQAS 214

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 95.7 bits (239), Expect = 3e-23
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           +   I+LNRPD +NA++   +  L+      E+D    L ++ G    FCSG D+ E+ E
Sbjct: 20  HTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPE 79

Query: 84  NPDTKLFDDFREFLQKPA------------KKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
           +        +     +               KP++ A+ G   G G+D     D+    E
Sbjct: 80  DGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASE 139

Query: 132 NVLMG 136
                
Sbjct: 140 QATFF 144

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 189 RLGQMIGTSRTMDMISLGRH--ITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LS 244
           R+ +++  S  + M  +G+H  ++A+ A + GL +++V         + RA +++    S
Sbjct: 160 RVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIV----EHDRLLERAHEIADIVNS 215

Query: 245 QSMLADRAT 253
            + LA R T
Sbjct: 216 NAPLAVRGT 224

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 94.9 bits (237), Expect = 4e-23
 Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 55/242 (22%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ ++ LN P++ N ++ +   +L + +   E D      +L G+   F +G DL  L+ 
Sbjct: 8   HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67

Query: 84  NPDTKLFDDFREFLQKPA--------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
             +    +++R  L             KP +AA+ G AV  G  LAL CDL  ++E   +
Sbjct: 68  VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARL 127

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPR--TQLKHSLRDNLSRDLAIPTCDVTIRRLGQM 193
           G+     V +       G       V    + +       L R  A+       +    +
Sbjct: 128 GY---TEVKI-------GF------VAALVSVI-------LVR--AVGE-----KAAKDL 157

Query: 194 IGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQSMLADR 251
           + T R ++         AREA   GL N++       G+A+  A  +++     +  + R
Sbjct: 158 LLTGRLVE---------AREAKALGLVNRIA----PPGKALEEAKALAEEVAKNAPTSLR 204

Query: 252 AT 253
            T
Sbjct: 205 LT 206

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 91.5 bits (228), Expect = 8e-22
 Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 57/229 (24%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHEL--- 81
           +  ++LN P   NA++   +  L + ++    D    + +L    G FC+G DL E    
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSG 80

Query: 82  -----DENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
                  +   +   +    ++    ++ P+IAAI G+    G  L   CD+        
Sbjct: 81  GSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSS 140

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTI-----RR 189
                            +              +  +          P     I      +
Sbjct: 141 FAL--------------TEA------------RIGV---------APA---IISLTLLPK 162

Query: 190 LGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238
           L               G    AR A + GL         A  + +   +
Sbjct: 163 LSA----RAAARYYLTGEKFDARRAEEIGLITMAAEDLDAAIDQLVTDV 207

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 90.0 bits (224), Expect = 4e-20
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 41/220 (18%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ +I L  P  +NA++   +  ++  +++   D      ++ G  GNFC+G D+H    
Sbjct: 30  SLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88

Query: 84  -NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRF 142
             P   L     E +Q+  +KP++AAI G A+G GL+LAL C  R       +G      
Sbjct: 89  FTPGLALGSLVDE-IQR-YQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGL----- 141

Query: 143 VYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDM 202
                              P   L             +P    T   L +++G    +D+
Sbjct: 142 -------------------PEVTLG-----------ILPGARGTQ-LLPRVVGVPVALDL 170

Query: 203 ISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
           I+ G++++A EAL  G+ + +V     V EA+  A ++  
Sbjct: 171 ITSGKYLSADEALRLGILDAVVK-SDPVEEAIKFAQKIID 209

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 89.6 bits (223), Expect = 4e-20
 Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 45/210 (21%)

Query: 24  NITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD 82
            I  +  +     +N  N  TL+ L++ +   + D      I+   +  F  G D+ E  
Sbjct: 16  GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFV 75

Query: 83  ENPDTKLFDDFREFLQKPA--------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVL 134
           EN      +     L+             P +AAI G A+G GL++ L  D R + ++  
Sbjct: 76  ENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAK 135

Query: 135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI 194
           +G                         P  +L              P    T+ RL ++I
Sbjct: 136 IGL------------------------PEVKLG-----------IYPGFGGTV-RLPRLI 159

Query: 195 GTSRTMDMISLGRHITAREALDWGLCNKMV 224
           G    ++ I+ G+   A +AL     + +V
Sbjct: 160 GVDNAVEWIASGKENRAEDALKVSAVDAVV 189

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 48/227 (21%), Positives = 86/227 (37%), Gaps = 49/227 (21%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + +I+L  P  +N+++   L  L+ N +      +    ++ G +G F  GFD+    E
Sbjct: 17  GVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGE 75

Query: 84  NPDTKLFDDFREFLQKPA--------KKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
                + +    ++            +KP +AAI G A+G GL+LA+ C  R       +
Sbjct: 76  MQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQL 135

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G                         P  QL             IP    T  RL +++G
Sbjct: 136 GL------------------------PELQLG-----------VIPGFGGTQ-RLPRLVG 159

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK 242
            ++ ++MI   + + A E    GL + +V       E +T A + + 
Sbjct: 160 LTKALEMILTSKPVKAEEGHSLGLIDAVV----PPAELVTTARRWAL 202

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 86.1 bits (214), Expect = 9e-20
 Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 13/123 (10%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHEL 81
            I  +++NRP+  NA   KT+  + +   R  DD    + +L G EG+  FCSG D  + 
Sbjct: 22  GIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTG-EGDLAFCSGGDQKKR 80

Query: 82  --------DENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
                   D+ P   + D  R     P  KP+IA + GYAVG G  L + CDL    +N 
Sbjct: 81  GHGGYVGEDQIPRLNVLDLQRLIRIIP--KPVIAMVKGYAVGGGNVLNVVCDLTIAADNA 138

Query: 134 LMG 136
           + G
Sbjct: 139 IFG 141

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
            L +++G  +  ++  L R   A+EALD GL N +V     + +     +Q  K  +  S
Sbjct: 158 YLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVV----PLEKVEDETVQWCKEIMKHS 213

Query: 247 MLADRA 252
             A R 
Sbjct: 214 PTALRF 219

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 85.6 bits (213), Expect = 1e-19
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHE-- 80
            I  I L+   K N+ +L+        I     D +  + I+       F +G D++   
Sbjct: 18  GIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76

Query: 81  -LDENPDTKLFDDFREFLQKPAK--KPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
             D    T+      E L K A+  +  IA + G+ VG GL++AL CDLRF+ + 
Sbjct: 77  SADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDE 131

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 57.5 bits (140), Expect = 8e-10
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
           RL ++IG SR +DM   G  IT +EAL+ GL N++        E   R  + ++   + +
Sbjct: 153 RLARLIGYSRALDMNITGETITPQEALEIGLVNRVF----PQAETRERTREYARKLANSA 208

Query: 247 MLADRA 252
             A   
Sbjct: 209 TYAVSN 214

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 84.6 bits (210), Expect = 4e-19
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN--FCSGFDLHE- 80
            I  I++NRP   NA    T+  + + +     D    + IL G  G+  FCSG D    
Sbjct: 37  GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTG-AGDKAFCSGGDQKVR 95

Query: 81  --------LDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN 132
                           + D  R+    P  KP++A + GY++G G  L + CDL    +N
Sbjct: 96  GDYGGYKDDSGVHHLNVLDFQRQIRTCP--KPVVAMVAGYSIGGGHVLHMMCDLTIAADN 153

Query: 133 VLMG 136
            + G
Sbjct: 154 AIFG 157

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
            + +++G  +  ++  L R   A++ALD GL N +V     + +     ++  +  L  S
Sbjct: 174 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVV----PLADLEKETVRWCREMLQNS 229

Query: 247 MLADRA 252
            +A R 
Sbjct: 230 PMALRC 235

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 84.2 bits (209), Expect = 6e-19
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 11/123 (8%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELD 82
            +   + N P  +N I  + +  L   ++     T   + I        F    D+ ++ 
Sbjct: 17  TVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVP 75

Query: 83  ENP--DTKLFDDFREFLQKP------AKKPIIAAITGYAVGQGLDLALWCDLRFV-EENV 133
           E      K        L              IA + G A G G +  L CD+RF   EN 
Sbjct: 76  EYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENA 135

Query: 134 LMG 136
           ++G
Sbjct: 136 ILG 138

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 12/61 (19%), Positives = 22/61 (36%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
            L +++G  R ++ +       A  A  +G  N+ V            A +MS   +  L
Sbjct: 155 HLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDAL 214

Query: 249 A 249
            
Sbjct: 215 I 215

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 30/143 (20%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN---------FCS 74
            +  +++ R D++NA + + +D ++  +     D    + +L G   +         F +
Sbjct: 176 GVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSA 235

Query: 75  GFDLHELDENPDTKLFDDFREFLQKPAK---------------------KPIIAAITGYA 113
           G +L  L +   + +    R  L    K                     KP +AA+ G+A
Sbjct: 236 GINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFA 295

Query: 114 VGQGLDLALWCDLRFVEENVLMG 136
           +G G  L L  D      +    
Sbjct: 296 IGGGAQLLLVFDRVLASSDAYFS 318

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSML 248
           RLG+  G   +  +I  GR I A+E     L +++V              ++     ++L
Sbjct: 334 RLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLD--GDAVL 391

Query: 249 ADRATV---LSECETCREEWMSERK 270
           A+R  +       +  R        
Sbjct: 392 ANRRMLNLADESPDGFRAYMAEFAL 416

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 12/125 (9%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN------FCSGFD 77
            I  I +NRP K NA   +T+  L +      +D    + +L G   +      FCSG D
Sbjct: 19  GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD 78

Query: 78  LHELDEN--PDTKLFDDFREF-LQK---PAKKPIIAAITGYAVGQGLDLALWCDLRFVEE 131
                E    D +         LQ+      K +IA + GYA+G G  L L CDL    +
Sbjct: 79  QSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAAD 138

Query: 132 NVLMG 136
           N + G
Sbjct: 139 NAIFG 143

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 189 RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK--LSQS 246
            L +++G  +  ++  L R  +A+EA   G+ N +V     V       IQ +K  LS+S
Sbjct: 160 YLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVV----PVDRLEEEGIQWAKEILSKS 215

Query: 247 MLADRA 252
            LA R 
Sbjct: 216 PLAIRC 221

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 13  LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN- 71
           +  ++ T     + +++LN    +NA++L  + A+   +  ++ D      +L G     
Sbjct: 40  VFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKA 99

Query: 72  FCSGFD---LHELDENPDTKLFDDFREFLQK---------PAKKPIIAAITGYAVGQGLD 119
           FC+G D   L+        ++ +  + F ++            KP++    G  +G GL 
Sbjct: 100 FCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLG 159

Query: 120 LALWCDLRFVEENVLMG 136
           L      + V E   + 
Sbjct: 160 LMAGASHKVVTETSRIA 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 51/309 (16%), Positives = 88/309 (28%), Gaps = 88/309 (28%)

Query: 35  KINAINLKTLDALQENIKRFEDD------TESPLAILYGQEGNFCSGFDLHELDE-NPDT 87
           +      +  D L      F D+       + P +IL  +E       D H +   +  +
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE------ID-HIIMSKDAVS 62

Query: 88  KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLAL-WCDLRFVEENVLMGFYNRRFVYLK 146
                F   L K  +      +    V + L +   +       E        R ++  +
Sbjct: 63  GTLRLFWTLLSKQEE------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 147 DSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRT------- 199
           D L +   V    +V R Q    LR  L      P  +V I   G ++G+ +T       
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLID--G-VLGSGKTWVALDVC 171

Query: 200 --------MDM----ISLGRHITAREALD--WGLCNKMVNCGTAVGEAMTRAIQMSKLSQ 245
                   MD     ++L    +    L+    L  ++    T+  +  +          
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL------ 225

Query: 246 SMLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLVHR--------- 296
                           R   +            L+ L K K  +N  LV           
Sbjct: 226 ----------------RIHSIQAE---------LRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 297 PFPI-CKIL 304
            F + CKIL
Sbjct: 261 AFNLSCKIL 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 58/382 (15%), Positives = 119/382 (31%), Gaps = 107/382 (28%)

Query: 10  MLRLVSSVCTKKILNITLISLNRPDKINAIN--LKTLDALQENI-KRFEDDTESP----L 62
           M + + S   ++I +I    +   D ++       TL + QE + ++F ++        L
Sbjct: 41  MPKSILS--KEEIDHI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 63  AILYGQEGNFCSG-FDLHELDENP---DTKLFDDF-----------REFLQ--KPAK--- 102
                 E    S    ++    +    D ++F  +           R+ L   +PAK   
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 103 --------KPIIAAIT--GYAVGQGLDLAL-WCDLRFV-EENVLMGFYNRRFVYLKDSLL 150
                   K  +A      Y V   +D  + W +L+       ++    +    +  +  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 151 SSGVVLYALHVPRTQLKHSLRDNLS-----RDLAI--------------PTCD--VTIR- 188
           S       + +    ++  LR  L        L +               +C   +T R 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 189 -----RLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL 243
                 L     T  ++D  S+   +T  E     L  K ++C     +     +  +  
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMT--LTPDEVK--SLLLKYLDC--RPQDLPREVLTTNPR 328

Query: 244 SQSMLADRATVLSECETCR-EEWMSERKHY--------IGISFE-LKFLQKKKKAKNGHL 293
             S++A+    + +      + W    KH         I  S   L+  + +K       
Sbjct: 329 RLSIIAES---IRD-GLATWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKM------ 374

Query: 294 VHRPFPICKIL-ENSHIPSQEL 314
               F    +   ++HIP+  L
Sbjct: 375 ----FDRLSVFPPSAHIPTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 49/249 (19%)

Query: 1   MTWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTES 60
            +       +  L+      K L+     L  P ++   N + L  + E+I+      ++
Sbjct: 294 HSMTLTPDEVKSLLL-----KYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 61  PLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDL 120
              +   +         L+ L+     K+FD    F   P    I   +        L L
Sbjct: 347 WKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVF---PPSAHIPTIL--------LSL 394

Query: 121 ALWCDLRFVE-ENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVP-------RTQLKHSL 170
            +W D+   +   V+   +    V    K+S +S    + ++++           L  S+
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALHRSI 449

Query: 171 RD--NLSR-----DLAIPTCDVTI-RRLGQMIGTSRTMDMISLGRHITAREALD--WGLC 220
            D  N+ +     DL  P  D      +G  +      + ++L R +     LD  + L 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDFRF-LE 504

Query: 221 NKMVNCGTA 229
            K+ +  TA
Sbjct: 505 QKIRHDSTA 513

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 9/136 (6%)

Query: 10  MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE 69
           M      V   K     +I+LNRP  +NA+ L  +  +   +K++E D E+ L I+ G  
Sbjct: 1   MTDAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAG 60

Query: 70  GN-FCSGFD---LHELDENPDTKLFDDFRE-----FLQKPAKKPIIAAITGYAVGQGLDL 120
           G  FC+G D   + E ++         FRE           +KP +A I G  +G G+ L
Sbjct: 61  GKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGL 120

Query: 121 ALWCDLRFVEENVLMG 136
           ++    R   E  L  
Sbjct: 121 SVHGQFRVATEKCLFA 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.87
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.82
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.79
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.58
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.57
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.44
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.41
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.11
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.68
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.6
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.54
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.5
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.43
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.22
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.01
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.79
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.64
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.62
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.47
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.39
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.36
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.32
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.23
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.93
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	96.85
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.63
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.3
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.23
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.77
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	95.69
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	95.02
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	94.69
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	94.53
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.0
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	93.8
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	93.43
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	91.83

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-57  Score=420.08  Aligned_cols=240  Identities=24%  Similarity=0.355  Sum_probs=211.2

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch--hHHHHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK--LFDDFR   94 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--~~~~~~   94 (314)
                      |.+|++|+|++||||||+++|+||.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++.......  ....+.
T Consensus         2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   81 (254)
T 3hrx_A            2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYN   81 (254)
T ss_dssp             EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHH
T ss_pred             eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999999999986543322  122233


Q ss_pred             HHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccc
Q psy9494          95 EFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRD  172 (314)
Q Consensus        95 ~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  172 (314)
                      ..+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                             
T Consensus        82 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lG-----------------------------  132 (254)
T 3hrx_A           82 RVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIG-----------------------------  132 (254)
T ss_dssp             HHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGT-----------------------------
T ss_pred             HHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcC-----------------------------
Confidence            33333  99999999999999999999999999999999999999999999                             


Q ss_pred             cccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHH
Q psy9494         173 NLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADR  251 (314)
Q Consensus       173 ~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K  251 (314)
                             +.|++|++++|++++|..+|++|+++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++.+|
T Consensus       133 -------l~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  205 (254)
T 3hrx_A          133 -------LVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTK  205 (254)
T ss_dssp             -------CCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             -------cCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHH
Confidence                   7788999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         252 ATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      +.++.......++.+..+.......+        ..||+|||+|+|+||
T Consensus       206 ~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~Gr  254 (254)
T 3hrx_A          206 KLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQGR  254 (254)
T ss_dssp             HHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            99998877665554433322211111        269999999999996

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=3.9e-57  Score=422.16  Aligned_cols=245  Identities=21%  Similarity=0.325  Sum_probs=205.8

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC---ch
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD---TK   88 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~   88 (314)
                      .+++.|.++++++|++||||||+++|+||.+|+.+|.++++++++|++||+|||||.|++||+|.|++++.....   .+
T Consensus        12 sM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~   91 (274)
T 4fzw_C           12 SMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPD   91 (274)
T ss_dssp             ----CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCC
T ss_pred             cccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchH
Confidence            466789999999999999999999999999999999999999999999999999999999999999998754322   11


Q ss_pred             hHHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccc
Q psy9494          89 LFDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVP  162 (314)
Q Consensus        89 ~~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~  162 (314)
                      ....    +..++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                   
T Consensus        92 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------  152 (274)
T 4fzw_C           92 LGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLG-------------------  152 (274)
T ss_dssp             HHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcc-------------------
Confidence            1111    2222222  89999999999999999999999999999999999999999999                   


Q ss_pred             cccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         163 RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                                       +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|+.
T Consensus       153 -----------------l~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  215 (274)
T 4fzw_C          153 -----------------LIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLAT  215 (274)
T ss_dssp             -----------------CCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTT
T ss_pred             -----------------cCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHc
Confidence                             777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         243 LSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       243 ~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      .||. ++.+|+.++.......++.+..+.......        ...||+|||+|+|+||
T Consensus       216 ~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~Gr  274 (274)
T 4fzw_C          216 QPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFTGK  274 (274)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCCCC
T ss_pred             CCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999 999999999877665554433322211111        1269999999999996

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=2.9e-57  Score=419.57  Aligned_cols=243  Identities=26%  Similarity=0.366  Sum_probs=210.9

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh-HHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL-FDD   92 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~   92 (314)
                      ++.|.++++|+|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........ ...
T Consensus         4 ms~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   83 (258)
T 4fzw_A            4 MSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDT   83 (258)
T ss_dssp             -CEEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCS
T ss_pred             CCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhH
Confidence            4568999999999999999999999999999999999999999999999999999999999999998765432111 111


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      ....+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------------  136 (258)
T 4fzw_A           84 RPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLG---------------------------  136 (258)
T ss_dssp             HHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGT---------------------------
T ss_pred             HHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCC---------------------------
Confidence            1222222  89999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               +.|+.|++++|++++|..+|++++++|++++|+||+++||||+|+|++++++++.+++++|++.||. ++.
T Consensus       137 ---------l~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~  207 (258)
T 4fzw_A          137 ---------IMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQA  207 (258)
T ss_dssp             ---------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             ---------cCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence                     7778999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      +|+.++.......++.+..+.......+        ..||+|||+|.|+||
T Consensus       208 ~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~Gr  258 (258)
T 4fzw_A          208 AKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFKGR  258 (258)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999998877665554433322211111        269999999999996

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.3e-54  Score=402.27  Aligned_cols=243  Identities=24%  Similarity=0.383  Sum_probs=210.8

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD   92 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   92 (314)
                      +++.|.++++++|++||||||++ |++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++...........
T Consensus         4 m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (261)
T 3pea_A            4 MLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATE   82 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHH
T ss_pred             cccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHH
Confidence            56789999999999999999999 99999999999999999999999999999999999999999999876543221111


Q ss_pred             H----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          93 F----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        93 ~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      +    ...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-----------------------  139 (261)
T 3pea_A           83 LAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLG-----------------------  139 (261)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGT-----------------------
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccC-----------------------
Confidence            2    222322  99999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||.
T Consensus       140 -------------l~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (261)
T 3pea_A          140 -------------LIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPA  206 (261)
T ss_dssp             -------------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHH
T ss_pred             -------------cCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHH
Confidence                         7778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                       ++.+|+.++.......++.+..+.......+        ..+|+|||+|.|+|+
T Consensus       207 a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~g~  261 (261)
T 3pea_A          207 TARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFSGR  261 (261)
T ss_dssp             HHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC-
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence             9999999988766554444333222111111        269999999999985

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=4.7e-54  Score=399.25  Aligned_cols=244  Identities=24%  Similarity=0.378  Sum_probs=211.4

Q ss_pred             ccccEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchh-
Q psy9494          13 LVSSVCTK-KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKL-   89 (314)
Q Consensus        13 ~~~~v~~~-~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~-   89 (314)
                      .++.|.++ ++++|++||||||+++|++|.+|+.+|.++++++++|+++|+|||||.| ++||+|.|++++........ 
T Consensus         6 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~   85 (265)
T 3kqf_A            6 QLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVR   85 (265)
T ss_dssp             -CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHH
T ss_pred             cCCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHH
Confidence            36789999 8999999999999999999999999999999999999999999999999 99999999999875432211 


Q ss_pred             --HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          90 --FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        90 --~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                        ...+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                      
T Consensus        86 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------------  143 (265)
T 3kqf_A           86 HAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLA----------------------  143 (265)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGT----------------------
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccC----------------------
Confidence              1122223332  99999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||
T Consensus       144 --------------l~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p  209 (265)
T 3kqf_A          144 --------------IIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGP  209 (265)
T ss_dssp             --------------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCH
T ss_pred             --------------cCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCH
Confidence                          777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      . ++.+|+.++.......++.+..+.......+        ..+|+|||+|.|+|+
T Consensus       210 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  265 (265)
T 3kqf_A          210 IAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYKGE  265 (265)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            9 9999999998776555544333222111111        269999999999985

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=3.8e-54  Score=402.42  Aligned_cols=245  Identities=21%  Similarity=0.264  Sum_probs=211.5

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---   88 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---   88 (314)
                      ..++.|.++++++|++||||||++.|++|.+|+++|.++++++++|+++|+|||||.|++||+|.|++++.......   
T Consensus        14 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   93 (279)
T 3g64_A           14 PEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTA   93 (279)
T ss_dssp             SCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhh
Confidence            34678999999999999999999999999999999999999999999999999999999999999999885422111   


Q ss_pred             ----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccc
Q psy9494          89 ----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVP  162 (314)
Q Consensus        89 ----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~  162 (314)
                          ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                   
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-------------------  154 (279)
T 3g64_A           94 RLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVG-------------------  154 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcC-------------------
Confidence                11112223332  89999999999999999999999999999999999999999999                   


Q ss_pred             cccccccccccccccccCC-CCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494         163 RTQLKHSLRDNLSRDLAIP-TCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS  241 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~-p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  241 (314)
                                       +. |++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|+
T Consensus       155 -----------------l~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  217 (279)
T 3g64_A          155 -----------------LSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLA  217 (279)
T ss_dssp             -----------------CCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHH
T ss_pred             -----------------CCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHH
Confidence                             55 889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         242 KLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       242 ~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +.||. ++.+|+.++.......++.+..+.......        ...+|+|||+|+|+|+
T Consensus       218 ~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  277 (279)
T 3g64_A          218 DGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQGR  277 (279)
T ss_dssp             TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             hCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence            99999 999999999877655554433322211111        1269999999999987

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=7.2e-54  Score=396.00  Aligned_cols=241  Identities=22%  Similarity=0.262  Sum_probs=207.8

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD   92 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   92 (314)
                      .++.|.++++++|++||||||+++|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++..   ......
T Consensus         4 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~---~~~~~~   80 (255)
T 3p5m_A            4 SMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT---AGAADA   80 (255)
T ss_dssp             CBTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH---HHHHHH
T ss_pred             CCceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc---hHHHHH
Confidence            34679999999999999999999999999999999999999999999999999999999999999998762   122222


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      +...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G---------------------------  133 (255)
T 3p5m_A           81 ANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVG---------------------------  133 (255)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGT---------------------------
T ss_pred             HHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccC---------------------------
Confidence            3333333  89999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++.
T Consensus       134 ---------l~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  204 (255)
T 3p5m_A          134 ---------LMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGW  204 (255)
T ss_dssp             ---------CCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ---------cCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence                     7778999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +|+.++.......++.+..+.......        ...+|+|||+|.|+|+
T Consensus       205 ~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  255 (255)
T 3p5m_A          205 TKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFRGH  255 (255)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            999999876655444433222211111        1269999999999985

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1e-53  Score=397.84  Aligned_cols=243  Identities=18%  Similarity=0.185  Sum_probs=204.6

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--Cch-h
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--DTK-L   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~-~   89 (314)
                      .++.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....  ... .
T Consensus         2 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (268)
T 3i47_A            2 SLSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEEN   81 (268)
T ss_dssp             CCCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHH
T ss_pred             CCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHH
Confidence            3578999999999999999999999999999999999999999999999999999999999999999875421  111 1


Q ss_pred             ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                         ...+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------  140 (268)
T 3i47_A           82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLG---------------------  140 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGT---------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccC---------------------
Confidence               1122233333  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|++ +|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++|++|++.|
T Consensus       141 ---------------l~p~~g~~-~l~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  204 (268)
T 3i47_A          141 ---------------LIPAVISP-YVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNA  204 (268)
T ss_dssp             ---------------CCCTTTHH-HHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC
T ss_pred             ---------------CCcccHHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCC
Confidence                           66677777 78999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHH-HHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREE-WMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++.......++ ....+......        ....||+|||+|.|++.
T Consensus       205 ~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~  262 (268)
T 3i47_A          205 PEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNEG  262 (268)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC--
T ss_pred             HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence            99 999999999875543322 22211111111        11269999999999986

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2.2e-53  Score=399.80  Aligned_cols=244  Identities=23%  Similarity=0.317  Sum_probs=205.6

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch----
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK----   88 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----   88 (314)
                      +.+.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.......    
T Consensus        22 m~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~  101 (290)
T 3sll_A           22 MSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQ  101 (290)
T ss_dssp             -CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCH
T ss_pred             CCeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccc
Confidence            4457899999999999999999999999999999999999999999999999999999999999999986543221    


Q ss_pred             ------hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          89 ------LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        89 ------~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                            ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                 
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G-----------------  164 (290)
T 3sll_A          102 PTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNG-----------------  164 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTT-----------------
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccC-----------------
Confidence                  11122223332  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCC-chHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTC-DVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ  239 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~  239 (314)
                                         +.|+ +|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.++|.+++++
T Consensus       165 -------------------l~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~  225 (290)
T 3sll_A          165 -------------------LTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGER  225 (290)
T ss_dssp             -------------------SCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHH
T ss_pred             -------------------cCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHH
Confidence                               7777 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHH-HHHHHHHHHhhhh-chHHHHHHHHHHHHhhhH---------HHHHHhcCCCCCCCC
Q psy9494         240 MSKLSQS-MLADRATVLSECE-TCREEWMSERKHYIGISF---------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       240 la~~~~~-~~~~K~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~af~ekr~p~~~~~  292 (314)
                      |++.||. ++.+|+.++.... ...++.+..+.......+         ..||+|||+|.|+|+
T Consensus       226 la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~g~  289 (290)
T 3sll_A          226 IAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDK  289 (290)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCCSC
T ss_pred             HHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999 9999999998776 555544333222222222         279999999999986

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.2e-53  Score=392.76  Aligned_cols=242  Identities=22%  Similarity=0.337  Sum_probs=203.8

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH--
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD--   92 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~--   92 (314)
                      +.|.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........  
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (257)
T 2ej5_A            3 ETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSR   82 (257)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHT
T ss_pred             CceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999998765332111111  


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      +.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        83 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------------  135 (257)
T 2ej5_A           83 YAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVG---------------------------  135 (257)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGT---------------------------
T ss_pred             HHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccC---------------------------
Confidence            2233332  89999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               +.|+.|++++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..||. ++.
T Consensus       136 ---------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  206 (257)
T 2ej5_A          136 ---------LVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGL  206 (257)
T ss_dssp             ---------CCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ---------CCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHHH
Confidence                     7778999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +|+.++.......++.+..+.......        ...+|++||+|.|+|+
T Consensus       207 ~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~  257 (257)
T 2ej5_A          207 IKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQGN  257 (257)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCCCCC
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCCCCC
Confidence            999998766544443332221111111        1269999999999874

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=4.5e-54  Score=399.13  Aligned_cols=245  Identities=24%  Similarity=0.356  Sum_probs=210.5

Q ss_pred             hccccEEEEEeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhH
Q psy9494          12 RLVSSVCTKKILN-ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLF   90 (314)
Q Consensus        12 ~~~~~v~~~~~~~-v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   90 (314)
                      +.++.|.++++++ |++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus         6 m~~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   85 (263)
T 3moy_A            6 TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQAR   85 (263)
T ss_dssp             CCCSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHH
T ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHH
Confidence            3467899999888 999999999999999999999999999999999999999999999999999999998654322111


Q ss_pred             -HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          91 -DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        91 -~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                       ..+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        86 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G------------------------  141 (263)
T 3moy_A           86 ERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLG------------------------  141 (263)
T ss_dssp             HTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGT------------------------
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccC------------------------
Confidence             011112222  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. 
T Consensus       142 ------------l~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a  209 (263)
T 3moy_A          142 ------------ILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPA  209 (263)
T ss_dssp             ------------CCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHH
T ss_pred             ------------CCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHH
Confidence                        7778999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++.......++.+..+.......        ...||+|||+|.|+|+
T Consensus       210 ~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~g~  263 (263)
T 3moy_A          210 GRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFTDR  263 (263)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999876655544433322211111        1269999999999985

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=7.7e-54  Score=399.23  Aligned_cols=243  Identities=19%  Similarity=0.280  Sum_probs=204.0

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC------
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD------   86 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~------   86 (314)
                      +++.|.++++++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++.....      
T Consensus         9 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   88 (274)
T 3tlf_A            9 SFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERP   88 (274)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------C
T ss_pred             cCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999998864322      


Q ss_pred             -chhHHHH---HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          87 -TKLFDDF---REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        87 -~~~~~~~---~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                       ......+   ...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                 
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------  151 (274)
T 3tlf_A           89 YLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIG-----------------  151 (274)
T ss_dssp             TTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGT-----------------
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccC-----------------
Confidence             0001111   111222  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCC--CCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGR--HITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~--~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                         +.| +|++++|++++|..+|++++++|+  +++|+||+++||||+++|++++.+++.++++
T Consensus       152 -------------------l~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~  211 (274)
T 3tlf_A          152 -------------------LVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIAD  211 (274)
T ss_dssp             -------------------CCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHH
T ss_pred             -------------------ccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHH
Confidence                               777 899999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         239 QMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      +|++.||. ++.+|+.++.......++.+..+.......+        ..+|+|||+|.|+|+
T Consensus       212 ~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  274 (274)
T 3tlf_A          212 IVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQCR  274 (274)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence            99999999 9999999998776555544433322211111        269999999999985

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.7e-53  Score=398.57  Aligned_cols=244  Identities=25%  Similarity=0.384  Sum_probs=210.0

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhH-H
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLF-D   91 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-~   91 (314)
                      .++.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......... .
T Consensus        23 ~~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~  102 (278)
T 3h81_A           23 TYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTA  102 (278)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHH
T ss_pred             CCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHH
Confidence            356799999999999999999999999999999999999999999999999999999999999999998654321100 0


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .....+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                          
T Consensus       103 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lG--------------------------  156 (278)
T 3h81_A          103 DFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLG--------------------------  156 (278)
T ss_dssp             TTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGT--------------------------
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcC--------------------------
Confidence            00011111  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++
T Consensus       157 ----------l~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~  226 (278)
T 3h81_A          157 ----------VLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAAR  226 (278)
T ss_dssp             ----------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ----------cCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHH
Confidence                      7778999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      .+|+.++.......++.+..+.......        ...||+|||+|.|+|+
T Consensus       227 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~g~  278 (278)
T 3h81_A          227 MAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR  278 (278)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999877655554433322211111        1269999999999985

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=7e-54  Score=397.80  Aligned_cols=244  Identities=34%  Similarity=0.545  Sum_probs=196.1

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHH
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFD   91 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   91 (314)
                      .+++.|.++++++|++||||||+++|+||.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++..........
T Consensus         8 ~~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   87 (262)
T 3r9q_A            8 EMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHP   87 (262)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCT
T ss_pred             ccCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999986543221100


Q ss_pred             -HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          92 -DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        92 -~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                       ........  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        88 ~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------------  142 (262)
T 3r9q_A           88 HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWG-------------------------  142 (262)
T ss_dssp             TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHT-------------------------
T ss_pred             hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccC-------------------------
Confidence             00011111  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 ++|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++|++|++.||. +
T Consensus       143 -----------l~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  211 (262)
T 3r9q_A          143 -----------VPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCV  211 (262)
T ss_dssp             -----------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred             -----------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHH
Confidence                       7788999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHH----h--hhHHHHHHhcCCCCCCC
Q psy9494         248 LADRATVLSECETCREEWMSERKHYI----G--ISFELKFLQKKKKAKNG  291 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~af~ekr~p~~~~  291 (314)
                      +.+|+.++.......++.+..+....    .  .....||+|||+|.|+|
T Consensus       212 ~~~K~~~~~~~~~~l~~~l~~e~~~~~~~~sd~~Eg~~AF~ekr~p~~~~  261 (262)
T 3r9q_A          212 RADRDSAIAQWGMAEEAALDNEFGSIERVATEALEGAGRFAAGEGRHGAG  261 (262)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHTHHHHHHC-------------------
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCC
Confidence            99999999877655544433222111    0  00116999999999986

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=4.7e-54  Score=399.30  Aligned_cols=244  Identities=20%  Similarity=0.305  Sum_probs=207.9

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD   92 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   92 (314)
                      +++.|.++++++|++||||||+++|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++...........
T Consensus         5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   84 (265)
T 3qxz_A            5 MVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPD   84 (265)
T ss_dssp             -CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSC
T ss_pred             ccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999865322111000


Q ss_pred             H--HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          93 F--REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        93 ~--~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      +  ...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        85 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-------------------------  139 (265)
T 3qxz_A           85 FSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFG-------------------------  139 (265)
T ss_dssp             CCSCCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGT-------------------------
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccC-------------------------
Confidence            0  112222  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC-CHH-
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL-SQS-  246 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~-~~~-  246 (314)
                                 +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++. ||. 
T Consensus       140 -----------l~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a  208 (265)
T 3qxz_A          140 -----------VAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPES  208 (265)
T ss_dssp             -----------SCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             -----------cCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHH
Confidence                       7778999999999999999999999999999999999999999999999999999999999999 999 


Q ss_pred             HHHHHHHHHhhhhchHHHH--HHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEW--MSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++.......++.  +..+.......        ...+|+|||+|.|+|+
T Consensus       209 ~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~g~  264 (265)
T 3qxz_A          209 AALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWAGQ  264 (265)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCCCC
Confidence            9999999987765433222  22221111111        1269999999999986

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1e-53  Score=399.53  Aligned_cols=250  Identities=22%  Similarity=0.270  Sum_probs=208.8

Q ss_pred             hhhhHhhh-ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccC
Q psy9494           5 FYHRAMLR-LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE   83 (314)
Q Consensus         5 ~~~~~~~~-~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~   83 (314)
                      -..+.|.. .++.|.++++++|++||||||++.|+||.+|+.+|.++++++  |+++|+|||||.|++||+|+|++++..
T Consensus         5 ~~~~~~~~m~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~   82 (275)
T 3hin_A            5 GNAQAATIADPSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRE   82 (275)
T ss_dssp             ----CCCCCCGGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCC
T ss_pred             CCCcccccCCCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhc
Confidence            34455543 367899999999999999999999999999999999999999  679999999999999999999999876


Q ss_pred             CCCchh---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhh
Q psy9494          84 NPDTKL---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYA  158 (314)
Q Consensus        84 ~~~~~~---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~  158 (314)
                      ......   ...+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|               
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------  147 (275)
T 3hin_A           83 RDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRG---------------  147 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGT---------------
T ss_pred             cChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccC---------------
Confidence            332211   1222333333  99999999999999999999999999999999999999999999               


Q ss_pred             cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                           +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++
T Consensus       148 ---------------------l~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~  206 (275)
T 3hin_A          148 ---------------------IFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGN  206 (275)
T ss_dssp             ---------------------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHH
T ss_pred             ---------------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHH
Confidence                                 77789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         239 QMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      +|++.||. ++.+|+.++.......++.+..+.......+        ..+|+|||+|.|++.
T Consensus       207 ~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~  269 (275)
T 3hin_A          207 RVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVREG  269 (275)
T ss_dssp             HHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999 9999999987766554443333222111111        269999999999876

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1e-53  Score=395.30  Aligned_cols=242  Identities=25%  Similarity=0.399  Sum_probs=208.8

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDF   93 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   93 (314)
                      .+.|.++++++|++||||||+++|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++...........+
T Consensus         6 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   85 (256)
T 3trr_A            6 ADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGL   85 (256)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEE
T ss_pred             CCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhh
Confidence            45799999999999999999999999999999999999999999999999999999999999999987543221111101


Q ss_pred             HHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccc
Q psy9494          94 REFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDN  173 (314)
Q Consensus        94 ~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  173 (314)
                       .+...++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                              
T Consensus        86 -~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G------------------------------  134 (256)
T 3trr_A           86 -GFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRG------------------------------  134 (256)
T ss_dssp             -TTSSSCCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGT------------------------------
T ss_pred             -hHHHhcCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccC------------------------------
Confidence             1111189999999999999999999999999999999999999999999                              


Q ss_pred             ccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHH
Q psy9494         174 LSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRA  252 (314)
Q Consensus       174 ~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~  252 (314)
                            +.|+.|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++.+|+
T Consensus       135 ------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~  208 (256)
T 3trr_A          135 ------LVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKR  208 (256)
T ss_dssp             ------CCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             ------CCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                  7778999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         253 TVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      .++.......++.+..+.......+        ..+|+|||+|.|+|+
T Consensus       209 ~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  256 (256)
T 3trr_A          209 IIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQGK  256 (256)
T ss_dssp             HHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence            9998776555444333222111111        269999999999985

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=3.1e-53  Score=396.08  Aligned_cols=244  Identities=25%  Similarity=0.326  Sum_probs=200.0

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD   92 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   92 (314)
                      ....|.++++++|++||||||++.|+||.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++...........
T Consensus        18 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   97 (278)
T 4f47_A           18 SGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKD   97 (278)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-------------------
T ss_pred             CCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHH
Confidence            44679999999999999999999999999999999999999999999999999999999999999998865432211111


Q ss_pred             ---HHHH---Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          93 ---FREF---LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        93 ---~~~~---~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                         ....   +.+  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        98 ~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------  156 (278)
T 4f47_A           98 GSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWS---------------------  156 (278)
T ss_dssp             ---CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGT---------------------
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccC---------------------
Confidence               0111   111  79999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus       157 ---------------l~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  221 (278)
T 4f47_A          157 ---------------LYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANG  221 (278)
T ss_dssp             ---------------CCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC
T ss_pred             ---------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCC
Confidence                           77789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++.......++.+..+.......+        ..+|+|||+|.|+|+
T Consensus       222 ~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~g~  278 (278)
T 4f47_A          222 PLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQNR  278 (278)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence            99 9999999998876655554443322222221        279999999999985

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=7.1e-53  Score=391.76  Aligned_cols=242  Identities=20%  Similarity=0.311  Sum_probs=208.2

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC----Cchh-
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP----DTKL-   89 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~----~~~~-   89 (314)
                      +.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....    .... 
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (269)
T 1nzy_A            3 EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHF   82 (269)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999986532    1111 


Q ss_pred             ---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          90 ---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        90 ---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                         ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G---------------------  141 (269)
T 1nzy_A           83 RIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIG---------------------  141 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT---------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccC---------------------
Confidence               1112223332  89999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.|
T Consensus       142 ---------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  206 (269)
T 1nzy_A          142 ---------------IGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP  206 (269)
T ss_dssp             ---------------CCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC
T ss_pred             ---------------CCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCC
Confidence                           77889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++.......++.+..+.......+        ..+|++||+|.|+++
T Consensus       207 p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~~  263 (269)
T 1nzy_A          207 THLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV  263 (269)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence            99 9999999987765444433332221111111        279999999999987

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.4e-53  Score=394.38  Aligned_cols=243  Identities=20%  Similarity=0.232  Sum_probs=207.5

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCC---chhH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPD---TKLF   90 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~   90 (314)
                      ++.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|+.||+|.|++++.....   ....
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   87 (265)
T 3swx_A            8 YETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTP   87 (265)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCC
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999999988743111   0000


Q ss_pred             HHHHHHHh---cCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          91 DDFREFLQ---KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        91 ~~~~~~~~---~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ....+.+.   .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        88 ~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G------------------------  143 (265)
T 3swx_A           88 EGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRG------------------------  143 (265)
T ss_dssp             TTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGT------------------------
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccc------------------------
Confidence            00011111   279999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. 
T Consensus       144 ------------l~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a  211 (265)
T 3swx_A          144 ------------IYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLG  211 (265)
T ss_dssp             ------------SCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHH
T ss_pred             ------------cCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHH
Confidence                        7778999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++.......++.+..+.......        ...+|+|||+|.|+|+
T Consensus       212 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  265 (265)
T 3swx_A          212 VQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFVGR  265 (265)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence            999999998876554444333222211111        1269999999999985

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.3e-53  Score=396.98  Aligned_cols=243  Identities=22%  Similarity=0.334  Sum_probs=206.7

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchhHH-
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKLFD-   91 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~-   91 (314)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++++++|+++|+|||||.| ++||+|.|++++.......... 
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   87 (267)
T 3r9t_A            8 APGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDH   87 (267)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTC
T ss_pred             CCcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHH
Confidence            45799999999999999999999999999999999999999999999999999999 5999999999876432211100 


Q ss_pred             -HH--HHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          92 -DF--REFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        92 -~~--~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                       .+  ..+...++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        88 ~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------------  142 (267)
T 3r9t_A           88 PEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRG-------------------------  142 (267)
T ss_dssp             GGGCGGGTTTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTT-------------------------
T ss_pred             HhHHHHHHHHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccC-------------------------
Confidence             11  11111289999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|+.|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++|++|++.||. +
T Consensus       143 -----------l~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~  211 (267)
T 3r9t_A          143 -----------LIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSV  211 (267)
T ss_dssp             -----------CCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHH
T ss_pred             -----------CCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHH
Confidence                       7778999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHH---HHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         248 LADRAT---VLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       248 ~~~K~~---~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      +.+|+.   ++.......++.+..+.......        ...||+|||+|.|+|+
T Consensus       212 ~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~g~  267 (267)
T 3r9t_A          212 QASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQAR  267 (267)
T ss_dssp             HHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            999999   77665544443333221111111        1269999999999985

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=3.6e-53  Score=395.56  Aligned_cols=250  Identities=23%  Similarity=0.298  Sum_probs=204.3

Q ss_pred             CchhhhhhHhhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEc-----CC-CCccc
Q psy9494           1 MTWVFYHRAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG-----QE-GNFCS   74 (314)
Q Consensus         1 ~~~~~~~~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg-----~g-~~F~a   74 (314)
                      |+|..     ...++.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||     .| ++||+
T Consensus         1 ~~w~~-----~~~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~a   75 (275)
T 4eml_A            1 MDWHI-----AKHYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCS   75 (275)
T ss_dssp             CCCEE-----EEECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEEC
T ss_pred             CCccc-----ccCCceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeC
Confidence            67766     244678999999999999999999999999999999999999999999999999999     88 59999


Q ss_pred             cCCcccccCCCCch-------hHHHHHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccc
Q psy9494          75 GFDLHELDENPDTK-------LFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKD  147 (314)
Q Consensus        75 G~Dl~~~~~~~~~~-------~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~  147 (314)
                      |+|++++.......       ....+...+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|    
T Consensus        76 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----  150 (275)
T 4eml_A           76 GGDQSVRGEGGYIDDQGTPRLNVLDLQRLIR-SMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVG----  150 (275)
T ss_dssp             CBCCC--------------CCCHHHHHHHHH-HSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT----
T ss_pred             CcChhhhhcccccchhhHHHHHHHHHHHHHH-hCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccC----
Confidence            99999885421110       0111222222 89999999999999999999999999999999999999999999    


Q ss_pred             cccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                                                      +.|+++++++|++++|..+|++++++|++++|+||+++||||+|+|++
T Consensus       151 --------------------------------l~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  198 (275)
T 4eml_A          151 --------------------------------SFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVD  198 (275)
T ss_dssp             --------------------------------CCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             --------------------------------CCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHH
Confidence                                            445566789999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHH-------hhhHHHHHHhcCCCCCCCC
Q psy9494         228 TAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYI-------GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       228 ~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~af~ekr~p~~~~~  292 (314)
                      ++.+++.++|++|++.||. ++.+|+.++............+.....       ......||+|||+|.|+++
T Consensus       199 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~  271 (275)
T 4eml_A          199 RLEEEGIQWAKEILSKSPLAIRCLKAAFNADCDGQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFSQY  271 (275)
T ss_dssp             GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTTC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999 999999998765422111111111100       0011269999999999986

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=5.3e-53  Score=392.55  Aligned_cols=241  Identities=19%  Similarity=0.267  Sum_probs=197.1

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCccccc---CCCCc--
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD---ENPDT--   87 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~---~~~~~--   87 (314)
                      .++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.   .....  
T Consensus         3 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T 3fdu_A            3 LHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGP   82 (266)
T ss_dssp             CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSC
T ss_pred             CCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhh
Confidence            3567999999999999999999999999999999999999999999999999999999999999999876   32221  


Q ss_pred             hhHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          88 KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        88 ~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                      .....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                      
T Consensus        83 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------------  140 (266)
T 3fdu_A           83 AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLG----------------------  140 (266)
T ss_dssp             GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTT----------------------
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhC----------------------
Confidence            122223333333  89999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|  ++.+++.++|++|+..||
T Consensus       141 --------------l~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~  204 (266)
T 3fdu_A          141 --------------LSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPL  204 (266)
T ss_dssp             --------------CCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCH
T ss_pred             --------------CCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCH
Confidence                          7778999999999999999999999999999999999999999999  899999999999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      . ++.+|+.++... ...++.+..+.......        ...+|+|||+|.|+..
T Consensus       205 ~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~~  259 (266)
T 3fdu_A          205 ASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQE  259 (266)
T ss_dssp             HHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            9 999999998754 23333322221111111        1269999999999865

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=7.3e-53  Score=389.48  Aligned_cols=242  Identities=23%  Similarity=0.376  Sum_probs=207.4

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-h-hHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-K-LFD   91 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~-~~~   91 (314)
                      +..|.++++++|++||||||+++|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...... . ...
T Consensus         4 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (258)
T 2pbp_A            4 FVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLN   83 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHC
T ss_pred             cceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999987543210 0 000


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .+ +.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                          
T Consensus        84 ~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--------------------------  136 (258)
T 2pbp_A           84 QF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLG--------------------------  136 (258)
T ss_dssp             TT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGT--------------------------
T ss_pred             HH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccC--------------------------
Confidence            11 22222  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                +.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus       137 ----------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  206 (258)
T 2pbp_A          137 ----------VMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALR  206 (258)
T ss_dssp             ----------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ----------CCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH
Confidence                      7778999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         249 ADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      .+|+.++.......++.+..+......        ....+|++||+|.|+|+
T Consensus       207 ~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~  258 (258)
T 2pbp_A          207 LIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRFQGK  258 (258)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCC
Confidence            999999877655444433322111111        11269999999999874

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=2.3e-52  Score=387.72  Aligned_cols=243  Identities=21%  Similarity=0.273  Sum_probs=203.6

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-h---
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-K---   88 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~---   88 (314)
                      .++.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++ ....... .   
T Consensus         7 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~   85 (265)
T 3rsi_A            7 AARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGWMVRDGSAPP   85 (265)
T ss_dssp             --CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------C
T ss_pred             CCCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-cccccchHHHHH
Confidence            3567999999999999999999999999999999999999999999999999999999999999998 2211110 0   


Q ss_pred             hHHH-HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          89 LFDD-FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        89 ~~~~-~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                      .... +...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                      
T Consensus        86 ~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----------------------  143 (265)
T 3rsi_A           86 LDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRG----------------------  143 (265)
T ss_dssp             CCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGT----------------------
T ss_pred             HhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccC----------------------
Confidence            1122 3333423  79999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||
T Consensus       144 --------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~  209 (265)
T 3rsi_A          144 --------------LVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGP  209 (265)
T ss_dssp             --------------CCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCH
T ss_pred             --------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCH
Confidence                          777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      . ++.+|+.++.......++.+..+.......        ...+|+|||+|.|+|+
T Consensus       210 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  265 (265)
T 3rsi_A          210 LAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFTGR  265 (265)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence            9 999999999876655444433322211111        1279999999999985

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.9e-52  Score=388.17  Aligned_cols=245  Identities=24%  Similarity=0.296  Sum_probs=209.9

Q ss_pred             hhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEc-CCCCccccCCcccccCCCCch
Q psy9494          10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG-QEGNFCSGFDLHELDENPDTK   88 (314)
Q Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg-~g~~F~aG~Dl~~~~~~~~~~   88 (314)
                      +...++.|.++++++|++|||||| +.|++|.+|+.+|.+++++++.|+++|+||||| .|++||+|+|++++.. ....
T Consensus         4 ~~~~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~~~   81 (265)
T 2ppy_A            4 VETKKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-ADPR   81 (265)
T ss_dssp             EEEECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SCHH
T ss_pred             cCCCCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cchh
Confidence            344567899999999999999999 999999999999999999999999999999999 8999999999998865 2211


Q ss_pred             ---hHHHH-HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCe-Eeeccccccccccccccccchhhhhccc
Q psy9494          89 ---LFDDF-REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENV-LMGFYNRRFVYLKDSLLSSGVVLYALHV  161 (314)
Q Consensus        89 ---~~~~~-~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a-~f~~pe~~~G~~~~~~~~~g~~~~~~~~  161 (314)
                         ....+ .+.+..  ++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|                  
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~G------------------  143 (265)
T 2ppy_A           82 FKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLG------------------  143 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGT------------------
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccC------------------
Confidence               11122 233333  8999999999999999999999999999999999 9999999999                  


Q ss_pred             ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494         162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  241 (314)
                                        +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+
T Consensus       144 ------------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (265)
T 2ppy_A          144 ------------------VLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLA  205 (265)
T ss_dssp             ------------------CCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             ------------------CCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHH
Confidence                              77789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         242 KLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       242 ~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      ..||. ++.+|+.++.......++.+..+.......        ...+|++||+|.|+|.
T Consensus       206 ~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~~  265 (265)
T 2ppy_A          206 NSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWKGI  265 (265)
T ss_dssp             TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             hCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999 999999998876544444333222111111        1269999999999874

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.5e-53  Score=402.49  Aligned_cols=245  Identities=24%  Similarity=0.255  Sum_probs=182.7

Q ss_pred             cccEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccC---CCCch-
Q psy9494          14 VSSVCTKKIL-NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE---NPDTK-   88 (314)
Q Consensus        14 ~~~v~~~~~~-~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~---~~~~~-   88 (314)
                      ++.|.+++++ +|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++..   ..... 
T Consensus        28 ~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~  107 (298)
T 3qre_A           28 QDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMA  107 (298)
T ss_dssp             CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC----------------
T ss_pred             CCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccc
Confidence            4679999999 999999999999999999999999999999999999999999999999999999999864   11110 


Q ss_pred             ---hHHHHHHH----Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhc
Q psy9494          89 ---LFDDFREF----LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYAL  159 (314)
Q Consensus        89 ---~~~~~~~~----~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~  159 (314)
                         ....+...    +..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G----------------  171 (298)
T 3qre_A          108 KAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRG----------------  171 (298)
T ss_dssp             -------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHH----------------
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccC----------------
Confidence               00111111    111  89999999999999999999999999999999999999999999                


Q ss_pred             ccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494         160 HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~  239 (314)
                                          +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.++|.++|++
T Consensus       172 --------------------l~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~  231 (298)
T 3qre_A          172 --------------------LIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAED  231 (298)
T ss_dssp             --------------------HHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHH
T ss_pred             --------------------CCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHH
Confidence                                677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC-CHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCCcC
Q psy9494         240 MSKL-SQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGHLV  294 (314)
Q Consensus       240 la~~-~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~~~  294 (314)
                      |++. ||. ++.+|+.++........+.+..+.......        ...||+|||+|.|+++.+
T Consensus       232 la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~~~~  296 (298)
T 3qre_A          232 IARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPSLTS  296 (298)
T ss_dssp             HHHHSCHHHHHHHHHHHHGGGGC------------------------------------------
T ss_pred             HHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCCC
Confidence            9998 999 999999999876654433322211111111        116999999999998754

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.1e-52  Score=394.31  Aligned_cols=241  Identities=20%  Similarity=0.326  Sum_probs=207.8

Q ss_pred             EEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhH----
Q psy9494          17 VCTKKI--LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLF----   90 (314)
Q Consensus        17 v~~~~~--~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~----   90 (314)
                      |.++++  ++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.........    
T Consensus        26 v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~  105 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLF  105 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHH
T ss_pred             EEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHH
Confidence            889999  99999999999999999999999999999999999999999999999999999999998763222211    


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus       106 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lG-------------------------  160 (286)
T 3myb_A          106 ARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVG-------------------------  160 (286)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGT-------------------------
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccC-------------------------
Confidence            122233332  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +. ++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|+..||. +
T Consensus       161 -----------l~-~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~  228 (286)
T 3myb_A          161 -----------LF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAV  228 (286)
T ss_dssp             -----------CC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHH
T ss_pred             -----------CC-CchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHH
Confidence                       56 6788999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCCCcC
Q psy9494         248 LADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNGHLV  294 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~~~~  294 (314)
                      +.+|+.++.......++.+..+.......+        ..+|++||+|.|+|+.+
T Consensus       229 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g~~p  283 (286)
T 3myb_A          229 AMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHTPQP  283 (286)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCCCC-
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCCCC
Confidence            999999998766554443332222111111        26999999999999744

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=8.4e-53  Score=391.02  Aligned_cols=242  Identities=22%  Similarity=0.347  Sum_probs=200.1

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh-HH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL-FD   91 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~   91 (314)
                      .++.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++........ ..
T Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   92 (265)
T 3qxi_A           13 TEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGR   92 (265)
T ss_dssp             --CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETTT
T ss_pred             CCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999998764332111 11


Q ss_pred             HHHHHHhc-CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          92 DFREFLQK-PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        92 ~~~~~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      .+ . +.. ..||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        93 ~~-~-~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------------  143 (265)
T 3qxi_A           93 GL-G-FTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRG---------------------------  143 (265)
T ss_dssp             EE-T-TTTSCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGT---------------------------
T ss_pred             hh-h-HHHhhCCCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccC---------------------------
Confidence            11 0 222 22999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++.
T Consensus       144 ---------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~  214 (265)
T 3qxi_A          144 ---------LVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAA  214 (265)
T ss_dssp             ---------CCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ---------cCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHH
Confidence                     7778999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSECETCREEWMSERKHYIGI--------SFELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ekr~p~~~~~  292 (314)
                      +|+.++.......++.+..+......        ....+|+|||+|.|+|+
T Consensus       215 ~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~  265 (265)
T 3qxi_A          215 TKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWTGT  265 (265)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999876654333222211111111        11269999999999974

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=4.5e-52  Score=390.42  Aligned_cols=241  Identities=22%  Similarity=0.271  Sum_probs=205.7

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhH---
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLF---   90 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~---   90 (314)
                      .+.|.++++++|++|+||||++.|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........   
T Consensus        32 ~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~  111 (287)
T 2vx2_A           32 PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEV  111 (287)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHH
T ss_pred             CcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999987543221111   


Q ss_pred             -HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          91 -DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        91 -~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                       ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus       112 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lG------------------------  167 (287)
T 2vx2_A          112 FQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG------------------------  167 (287)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGT------------------------
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhC------------------------
Confidence             112222332  99999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|+++ |++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. 
T Consensus       168 ------------l~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a  234 (287)
T 2vx2_A          168 ------------LFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPV  234 (287)
T ss_dssp             ------------CCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHH
T ss_pred             ------------CCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHH
Confidence                        777889999 999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNG  291 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~  291 (314)
                      ++.+|+.++.......++.+..+.......        ...+|++||+|.|+|
T Consensus       235 ~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~g  287 (287)
T 2vx2_A          235 VSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH  287 (287)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence            999999998776544443332222111111        126999999999975

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=3.1e-52  Score=389.96  Aligned_cols=243  Identities=23%  Similarity=0.283  Sum_probs=204.3

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh--
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL--   89 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--   89 (314)
                      .+++.|.++++++|++||||||++ |++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........  
T Consensus        21 ~m~~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~   99 (277)
T 4di1_A           21 SMNEFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADT   99 (277)
T ss_dssp             --CCSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHH
T ss_pred             CCCceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHH
Confidence            355679999999999999999999 99999999999999999999999999999999999999999999875432211  


Q ss_pred             -HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          90 -FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        90 -~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                       ...+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus       100 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lG-----------------------  156 (277)
T 4di1_A          100 AARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAG-----------------------  156 (277)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGT-----------------------
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccC-----------------------
Confidence             1122233332  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.
T Consensus       157 -------------l~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  223 (277)
T 4di1_A          157 -------------LIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPR  223 (277)
T ss_dssp             -------------CCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHH
T ss_pred             -------------CCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHH
Confidence                         7778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhhhHHHHHHhcCCCC--CCCCc
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKA--KNGHL  293 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~ekr~p~--~~~~~  293 (314)
                       ++.+|+.++.......++.+..+.......+...  |||+|.  |+|+.
T Consensus       224 a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~--ekR~P~~~f~g~~  271 (277)
T 4di1_A          224 ALAAAKAVINDVFELEATERAAAERRRYVELFAAG--QRGPDGRGPGGGN  271 (277)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG--GC-----------
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc--ccCCCcCcCCCCC
Confidence             9999999998877666665554444333444445  999999  99874

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=4.3e-52  Score=384.73  Aligned_cols=235  Identities=22%  Similarity=0.292  Sum_probs=192.2

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHH
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDF   93 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   93 (314)
                      ++.|.++++++|++||||||+++|++|.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++....      .+
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~------~~   81 (256)
T 3pe8_A            8 SPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTT------EL   81 (256)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC------------
T ss_pred             CCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhH------HH
Confidence            457999999999999999999999999999999999999999999999999999999999999999886431      11


Q ss_pred             HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccc
Q psy9494          94 REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLR  171 (314)
Q Consensus        94 ~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~  171 (314)
                      ......  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                            
T Consensus        82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G----------------------------  133 (256)
T 3pe8_A           82 PDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVG----------------------------  133 (256)
T ss_dssp             ---CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT----------------------------
T ss_pred             HHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhC----------------------------
Confidence            222222  89999999999999999999999999999999999999999999                            


Q ss_pred             ccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHH
Q psy9494         172 DNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLAD  250 (314)
Q Consensus       172 ~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~  250 (314)
                              +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++.+
T Consensus       134 --------l~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  205 (256)
T 3pe8_A          134 --------LMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRAL  205 (256)
T ss_dssp             --------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             --------CCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                    7778999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHhhhhchHHHHHHHHHHH-H-------h---hhHHHHHHhcCCCCCC
Q psy9494         251 RATVLSECETCREEWMSERKHY-I-------G---ISFELKFLQKKKKAKN  290 (314)
Q Consensus       251 K~~~~~~~~~~~~~~~~~~~~~-~-------~---~~~~~af~ekr~p~~~  290 (314)
                      |+.++.......++.+..+... .       +   .....+|+|||+|.|.
T Consensus       206 K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~~  256 (256)
T 3pe8_A          206 LDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQVR  256 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccCC
Confidence            9999877665544443332221 1       1   1112699999999984

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=1.3e-52  Score=391.12  Aligned_cols=243  Identities=16%  Similarity=0.195  Sum_probs=202.7

Q ss_pred             ccccEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-h--
Q psy9494          13 LVSSVCTKKIL-NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-K--   88 (314)
Q Consensus        13 ~~~~v~~~~~~-~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~--   88 (314)
                      .++.|.+++++ +|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++...... .  
T Consensus        11 ~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   89 (272)
T 3qk8_A           11 DFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGR   89 (272)
T ss_dssp             GCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHH
T ss_pred             CCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHH
Confidence            45789999976 89999999999 9999999999999999999999999999999999999999999987532111 1  


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                     
T Consensus        90 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------  148 (272)
T 3qk8_A           90 IRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLG---------------------  148 (272)
T ss_dssp             HHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHT---------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccC---------------------
Confidence              11112223332  99999999999999999999999999999999999999999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++|++|+..|
T Consensus       149 ---------------l~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  213 (272)
T 3qk8_A          149 ---------------VAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGA  213 (272)
T ss_dssp             ---------------SCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC
T ss_pred             ---------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCC
Confidence                           77789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhh---chHHHHHHHH-HHHHh---hhHHHHHHhcCCCCCCCC
Q psy9494         245 QS-MLADRATVLSECE---TCREEWMSER-KHYIG---ISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~---~~~~~~~~~~-~~~~~---~~~~~af~ekr~p~~~~~  292 (314)
                      |. ++.+|+.++....   ...+..+..+ .....   .....||+|||+|.|+|+
T Consensus       214 ~~a~~~~K~~l~~~~~~~~~~~~~~~~~e~~~~~s~d~~eg~~Af~ekR~p~f~g~  269 (272)
T 3qk8_A          214 QNAIRWTKRSLNHWYRMFGPTFETSLGLEFLGFTGPDVQEGLAAHRQKRPARFTDR  269 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCC---
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99 9999999986543   1222211111 11000   011269999999999986

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.1e-51  Score=384.88  Aligned_cols=243  Identities=23%  Similarity=0.312  Sum_probs=201.8

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCC-CccccCCcccccCCCC---c
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEG-NFCSGFDLHELDENPD---T   87 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~-~F~aG~Dl~~~~~~~~---~   87 (314)
                      ..++.|.++++++|++||||||++.|+||.+|+++|.+++++++.|+++|+|||||.|+ +||+|+|++++.....   .
T Consensus        10 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   89 (273)
T 2uzf_A           10 REYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGED   89 (273)
T ss_dssp             BCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCS
T ss_pred             CCCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhh
Confidence            34567999999999999999999999999999999999999999999999999999998 9999999998753110   0


Q ss_pred             h----hHHHHHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          88 K----LFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        88 ~----~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                      .    ....+...+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                    
T Consensus        90 ~~~~~~~~~~~~~l~-~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------  148 (273)
T 2uzf_A           90 QIPRLNVLDLQRLIR-IIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVG--------------------  148 (273)
T ss_dssp             SSCCCTHHHHHHHHH-HSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTT--------------------
T ss_pred             hHHHhhHHHHHHHHH-hCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhC--------------------
Confidence            0    0112222222 79999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|++|++++|++++|..+|++++++|+.++|+||+++||||++++++++.+++.+++++|++.
T Consensus       149 ----------------l~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~  212 (273)
T 2uzf_A          149 ----------------SFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH  212 (273)
T ss_dssp             ----------------CCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTS
T ss_pred             ----------------CCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhC
Confidence                            7778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHhhhhchHHHHHHHH-HHHH-------hhhHHHHHHhcCCCCCCCC
Q psy9494         244 SQS-MLADRATVLSECETCREEWMSER-KHYI-------GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       244 ~~~-~~~~K~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~af~ekr~p~~~~~  292 (314)
                      ||. ++.+|+.++... ...+....+. ....       ......+|++||+|.|+|+
T Consensus       213 ~~~a~~~~K~~l~~~~-~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~~~  269 (273)
T 2uzf_A          213 SPTALRFLKAAMNADT-DGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQF  269 (273)
T ss_dssp             CHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCSSS
T ss_pred             CHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCCCC
Confidence            999 999999998321 1112222121 1110       0011269999999999987

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=3.2e-52  Score=385.74  Aligned_cols=243  Identities=27%  Similarity=0.385  Sum_probs=206.3

Q ss_pred             cccEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-h
Q psy9494          14 VSSVCTKK---ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-L   89 (314)
Q Consensus        14 ~~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~   89 (314)
                      ++.+.++.   .++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... .
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   82 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCY   82 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHH
T ss_pred             cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHH
Confidence            55677887   7899999999999999999999999999999999999999999999999999999999875422111 0


Q ss_pred             HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ...+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        83 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------------  138 (260)
T 1mj3_A           83 SGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLG------------------------  138 (260)
T ss_dssp             HC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGT------------------------
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccC------------------------
Confidence            0111111222  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++++++.+++++|+..||. 
T Consensus       139 ------------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a  206 (260)
T 1mj3_A          139 ------------TIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKII  206 (260)
T ss_dssp             ------------CCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHH
T ss_pred             ------------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHH
Confidence                        7778899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++.......++.+..+.......        ...+|++||+|.|+|+
T Consensus       207 ~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~g~  260 (260)
T 1mj3_A          207 VAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH  260 (260)
T ss_dssp             HHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence            999999998876554444333222111111        1269999999999874

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=5.5e-52  Score=390.29  Aligned_cols=245  Identities=21%  Similarity=0.275  Sum_probs=200.2

Q ss_pred             ccccEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCc-h-
Q psy9494          13 LVSSVCTKKI-LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDT-K-   88 (314)
Q Consensus        13 ~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-~-   88 (314)
                      .++.|.++++ ++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++...... . 
T Consensus        25 ~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~  104 (289)
T 3t89_A           25 GFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDD  104 (289)
T ss_dssp             TCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC-----------
T ss_pred             CCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhh
Confidence            4677999999 99999999999999999999999999999999999999999999999 599999999987542111 0 


Q ss_pred             ---hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          89 ---LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        89 ---~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                         ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+                   
T Consensus       105 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl-------------------  165 (289)
T 3t89_A          105 SGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGS-------------------  165 (289)
T ss_dssp             -----CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTC-------------------
T ss_pred             hHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCC-------------------
Confidence               00011222222  899999999999999999999999999999999999999999993                   


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +| .++++++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.++|++|+..
T Consensus       166 ----------------~~-~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~  228 (289)
T 3t89_A          166 ----------------FD-GGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQN  228 (289)
T ss_dssp             ----------------CC-CSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS
T ss_pred             ----------------CC-CchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcC
Confidence                            44 4556999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHhhhhchHHHHHHHHHHHHh-------hhHHHHHHhcCCCCCCCCc
Q psy9494         244 SQS-MLADRATVLSECETCREEWMSERKHYIG-------ISFELKFLQKKKKAKNGHL  293 (314)
Q Consensus       244 ~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~af~ekr~p~~~~~~  293 (314)
                      ||. ++.+|+.++............+......       .....||+|||+|.|+|+-
T Consensus       229 ~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~~~  286 (289)
T 3t89_A          229 SPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFK  286 (289)
T ss_dssp             CHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTTSC
T ss_pred             CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCCC
Confidence            999 9999999987654221111111111100       0112799999999999873

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=1.8e-52  Score=387.39  Aligned_cols=242  Identities=21%  Similarity=0.227  Sum_probs=203.3

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEc-CC-CCccccCCcccccCCCCc--hh
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG-QE-GNFCSGFDLHELDENPDT--KL   89 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg-~g-~~F~aG~Dl~~~~~~~~~--~~   89 (314)
                      ++.|.++++++|++||||||++.|++|.+|+++|.+++++++.|+ +|+||||| .| ++||+|+|++++......  ..
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 1ef8_A            3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSY   81 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTCT
T ss_pred             cceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHHH
Confidence            567999999999999999999999999999999999999999999 99999999 98 999999999987542111  11


Q ss_pred             HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccc
Q psy9494          90 FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLK  167 (314)
Q Consensus        90 ~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~  167 (314)
                      ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                        
T Consensus        82 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G------------------------  137 (261)
T 1ef8_A           82 DDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLG------------------------  137 (261)
T ss_dssp             TSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT------------------------
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccC------------------------
Confidence            1122333332  89999999999999999999999999999999999999999999                        


Q ss_pred             ccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-
Q psy9494         168 HSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-  246 (314)
Q Consensus       168 ~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-  246 (314)
                                  +.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..||. 
T Consensus       138 ------------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a  205 (261)
T 1ef8_A          138 ------------VPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLA  205 (261)
T ss_dssp             ------------CCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ------------CCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHH
Confidence                        7788999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhchHHHHH-HHHHHHH---------hhhHHHHHHhcCCCCCCCC
Q psy9494         247 MLADRATVLSECETCREEWM-SERKHYI---------GISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 ~~~~K~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~af~ekr~p~~~~~  292 (314)
                      ++.+|+.++.......++.+ .+.....         ......+|++||+|.|+|+
T Consensus       206 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~  261 (261)
T 1ef8_A          206 IAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH  261 (261)
T ss_dssp             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCCCCC
Confidence            99999999876543221111 1111110         0111269999999999875

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=4e-52  Score=387.65  Aligned_cols=243  Identities=23%  Similarity=0.338  Sum_probs=205.6

Q ss_pred             cccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCC---C---C
Q psy9494          14 VSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN---P---D   86 (314)
Q Consensus        14 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~---~   86 (314)
                      |+.|.+++ +++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++...   .   +
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            45788887 678999999999999999999999999999999999999999999999999999999987431   0   1


Q ss_pred             ch----hH----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhh
Q psy9494          87 TK----LF----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVL  156 (314)
Q Consensus        87 ~~----~~----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~  156 (314)
                      ..    ..    ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|             
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------  148 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVG-------------  148 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGT-------------
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccC-------------
Confidence            00    00    112222222  89999999999999999999999999999999999999999999             


Q ss_pred             hhcccccccccccccccccccccCCCCchHHHHHHHHhhH-HHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHH
Q psy9494         157 YALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT-SRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAM  234 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~-~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~  234 (314)
                                             +.|+.|++++|++++|. .+|++++++|++++|+||+++||||+++|+ +++.+++.
T Consensus       149 -----------------------l~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~  205 (275)
T 1dci_A          149 -----------------------LAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAF  205 (275)
T ss_dssp             -----------------------SCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHH
T ss_pred             -----------------------CCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHH
Confidence                                   77789999999999999 999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhh--------hHHHHHHhc---CCCCCCCC
Q psy9494         235 TRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGI--------SFELKFLQK---KKKAKNGH  292 (314)
Q Consensus       235 ~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~af~ek---r~p~~~~~  292 (314)
                      +++++|++.||. ++.+|+.++.......++.+..+......        ....+|+||   |+|.|+|+
T Consensus       206 ~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f~~~  275 (275)
T 1dci_A          206 ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL  275 (275)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            999999999999 99999999876654444333222211111        112699999   99999874

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=6.2e-52  Score=384.61  Aligned_cols=242  Identities=20%  Similarity=0.231  Sum_probs=200.5

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCc-cccCCcccccC----CCCc
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNF-CSGFDLHELDE----NPDT   87 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F-~aG~Dl~~~~~----~~~~   87 (314)
                      .++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++| |+|+|++++..    ....
T Consensus         2 s~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~   81 (263)
T 3lke_A            2 SLSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDV   81 (263)
T ss_dssp             -CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSH
T ss_pred             CCcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHH
Confidence            467899999999999999999999999999999999999999999999999999999999 99999998865    1211


Q ss_pred             hh---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccc
Q psy9494          88 KL---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVP  162 (314)
Q Consensus        88 ~~---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~  162 (314)
                      ..   ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                   
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------  142 (263)
T 3lke_A           82 RLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMG-------------------  142 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhC-------------------
Confidence            11   1222233333  99999999999999999999999999999999999999999999                   


Q ss_pred             cccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC-CCchHHHHHHHHHHHH
Q psy9494         163 RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVN-CGTAVGEAMTRAIQMS  241 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~-~~~l~~~a~~~a~~la  241 (314)
                                       +.|++|++++|++++|..+|++++++|++++|+||+++||||+++| ++++.+++.++|++|+
T Consensus       143 -----------------l~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la  205 (263)
T 3lke_A          143 -----------------ISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVS  205 (263)
T ss_dssp             -----------------CCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHH
Confidence                             7778999999999999999999999999999999999999999999 8999999999999999


Q ss_pred             hCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCC
Q psy9494         242 KLSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKN  290 (314)
Q Consensus       242 ~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~  290 (314)
                      +.||. ++.+|+.++.......++.+..+.......+        ..+|+||++|.|.
T Consensus       206 ~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~~  263 (263)
T 3lke_A          206 EGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHHH  263 (263)
T ss_dssp             TSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC---------
T ss_pred             hCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCCC
Confidence            99999 9999999998766555444433322211111        1699999999874

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=5.4e-52  Score=390.68  Aligned_cols=246  Identities=22%  Similarity=0.295  Sum_probs=196.5

Q ss_pred             hhhccccEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C
Q psy9494          10 MLRLVSSVCTKKILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D   86 (314)
Q Consensus        10 ~~~~~~~v~~~~~~~v~~itln-rp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~   86 (314)
                      ....++.|.++++++|++|||| ||++.|+||.+|+.+|.+++++++.|+. |+|||||.|++||+|+|++++....  .
T Consensus        18 ~~~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~   96 (291)
T 2fbm_A           18 GSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNN   96 (291)
T ss_dssp             ---CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHC
T ss_pred             CCCCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhccccc
Confidence            3556778999999999999999 7999999999999999999999999874 9999999999999999999874311  0


Q ss_pred             -ch----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhc
Q psy9494          87 -TK----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYAL  159 (314)
Q Consensus        87 -~~----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~  159 (314)
                       ..    ....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lG----------------  160 (291)
T 2fbm_A           97 RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFG----------------  160 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHT----------------
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcC----------------
Confidence             00    01112222222  89999999999999999999999999999999999999999999                


Q ss_pred             ccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494         160 HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~  239 (314)
                                          +.|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++
T Consensus       161 --------------------l~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~  220 (291)
T 2fbm_A          161 --------------------QSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKE  220 (291)
T ss_dssp             --------------------CCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHH
T ss_pred             --------------------CCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHH
Confidence                                777899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHH-HhcCCCCCCCC
Q psy9494         240 MSKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKF-LQKKKKAKNGH  292 (314)
Q Consensus       240 la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af-~ekr~p~~~~~  292 (314)
                      |++.||. ++.+|+.++.......++.+..+.......        ...+| +|||+|.|+|+
T Consensus       221 la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~~  283 (291)
T 2fbm_A          221 LASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPR  283 (291)
T ss_dssp             HTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC------------
T ss_pred             HHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCC
Confidence            9999999 999999998765544443333222111111        12699 99999999987

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=5.5e-52  Score=385.01  Aligned_cols=242  Identities=17%  Similarity=0.150  Sum_probs=205.4

Q ss_pred             hhhccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCC-C-C
Q psy9494          10 MLRLVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN-P-D   86 (314)
Q Consensus        10 ~~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~-~   86 (314)
                      ++..++.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++ +... . .
T Consensus         5 ~~~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~   82 (264)
T 1wz8_A            5 LEARYPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRAS   82 (264)
T ss_dssp             HHHHCTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHC
T ss_pred             ccCCCCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccc
Confidence            445566799999 9999999999999 99999999999999999999999999999999999999999998 6432 1 1


Q ss_pred             ch----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          87 TK----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        87 ~~----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                      ..    ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                 
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-----------------  145 (264)
T 1wz8_A           83 HEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLG-----------------  145 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT-----------------
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcC-----------------
Confidence            11    11122233332  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|
T Consensus       146 -------------------l~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l  206 (264)
T 1wz8_A          146 -------------------VAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL  206 (264)
T ss_dssp             -------------------SCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHH
T ss_pred             -------------------cCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHH
Confidence                               7778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKN  290 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~  290 (314)
                      +..||. ++.+|+.++..... .++.+..+.......        ...+|++||+|.|+
T Consensus       207 a~~~~~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  264 (264)
T 1wz8_A          207 AQGPKEALHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEFP  264 (264)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred             HhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCCC
Confidence            999999 99999999876554 333332221111111        12699999999985

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.6e-51  Score=382.35  Aligned_cols=238  Identities=18%  Similarity=0.235  Sum_probs=198.4

Q ss_pred             ccEEEE----EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccC-CCCch-
Q psy9494          15 SSVCTK----KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE-NPDTK-   88 (314)
Q Consensus        15 ~~v~~~----~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~-~~~~~-   88 (314)
                      +.+.++    .+++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.. ..... 
T Consensus         7 ~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (267)
T 3oc7_A            7 ALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSA   86 (267)
T ss_dssp             SSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CH
T ss_pred             cccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhh
Confidence            578888    899999999999999999999999999999999999999999999999999999999999862 11111 


Q ss_pred             ------hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          89 ------LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        89 ------~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                            ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------  149 (267)
T 3oc7_A           87 YDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIG-----------------  149 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGT-----------------
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccC-----------------
Confidence                  12222333333  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         +.|++|++++++ ++|..+|++++++|++++|+||+++||||++  ++++.+++.+++++|
T Consensus       150 -------------------l~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~l  207 (267)
T 3oc7_A          150 -------------------VAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDV  207 (267)
T ss_dssp             -------------------CCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHH
T ss_pred             -------------------CCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHH
Confidence                               777899999999 9999999999999999999999999999999  788999999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNG  291 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~  291 (314)
                      ++.||. ++.+|+.++.......++.+..+.......+        ..+|+|||+|.|++
T Consensus       208 a~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~~  267 (267)
T 3oc7_A          208 GRGSPQGLAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNWTS  267 (267)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTTC-
T ss_pred             HhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence            999999 9999999988765554444333222111111        26999999999975

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=5.7e-52  Score=397.56  Aligned_cols=240  Identities=18%  Similarity=0.177  Sum_probs=187.4

Q ss_pred             cccEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCC-------CccccCCcccccCC
Q psy9494          14 VSSVCTKKI--LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEG-------NFCSGFDLHELDEN   84 (314)
Q Consensus        14 ~~~v~~~~~--~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~-------~F~aG~Dl~~~~~~   84 (314)
                      ++.|.++++  ++|++||||||+++|+||.+|+++|.+++++++.|++||+|||||.|+       +||+|+|++++...
T Consensus        54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            667999986  899999999999999999999999999999999999999999999996       89999999986432


Q ss_pred             CC----c------hh----HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEe-CCeEeeccccccccccc
Q psy9494          85 PD----T------KL----FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE-ENVLMGFYNRRFVYLKD  147 (314)
Q Consensus        85 ~~----~------~~----~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~~~  147 (314)
                      ..    .      ..    ...+.+.+..  .+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|    
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lG----  209 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVG----  209 (334)
T ss_dssp             --------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCS----
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccC----
Confidence            11    0      00    0001122222  8999999999999999999999999999999 9999999999999    


Q ss_pred             cccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                                                      +.|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++
T Consensus       210 --------------------------------l~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~  257 (334)
T 3t8b_A          210 --------------------------------SFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHA  257 (334)
T ss_dssp             --------------------------------SSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGG
T ss_pred             --------------------------------CCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHH
Confidence                                            677888999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHH----------HHHHhhhHHHHHHhcCCCCCCCC
Q psy9494         228 TAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSER----------KHYIGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       228 ~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~af~ekr~p~~~~~  292 (314)
                      ++.++|.++|++|+..||. ++.+|+.++............+.          +..+++   .||+|||+|.|+++
T Consensus       258 ~l~~~a~~~A~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~s~d~~Eg~---~AFleKR~P~f~~~  330 (334)
T 3t8b_A          258 ELETVGLQWAAEINAKSPQAQRMLKFAFNLLDDGLVGQQLFAGEATRLAYMTDEAVEGR---DAFLQKRPPDWSPF  330 (334)
T ss_dssp             GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCCCC-----------------------------------------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhcCHHHHHHH---HHHHcCCCCCCCCC
Confidence            9999999999999999999 99999999876543322221111          111222   69999999999886

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.2e-51  Score=380.78  Aligned_cols=238  Identities=22%  Similarity=0.279  Sum_probs=192.4

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh---
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL---   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~---   89 (314)
                      .++.|.++++++|++||||||++.|++|.+|+++|.+++++++.|+++ +|||||.|++||+|+|++++........   
T Consensus        24 ~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~  102 (280)
T 2f6q_A           24 GFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK  102 (280)
T ss_dssp             ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred             CCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHH
Confidence            466789999999999999999999999999999999999999999999 9999999999999999999865332211   


Q ss_pred             ----HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          90 ----FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        90 ----~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                          ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                    
T Consensus       103 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G--------------------  162 (280)
T 2f6q_A          103 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLG--------------------  162 (280)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGT--------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhC--------------------
Confidence                1112233332  99999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..
T Consensus       163 ----------------l~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~  226 (280)
T 2f6q_A          163 ----------------QSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKL  226 (280)
T ss_dssp             ----------------CCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTS
T ss_pred             ----------------CCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhC
Confidence                            7778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCC
Q psy9494         244 SQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKK  287 (314)
Q Consensus       244 ~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p  287 (314)
                      ||. ++.+|+.++.......++.+..+.......+        ..+|+|||+|
T Consensus       227 ~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          227 PPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             CHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             CHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence            999 9999999987655444433332221111111        1699999988

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=1.3e-51  Score=385.03  Aligned_cols=247  Identities=19%  Similarity=0.251  Sum_probs=195.7

Q ss_pred             hhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC---C
Q psy9494          10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP---D   86 (314)
Q Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~   86 (314)
                      +...++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....   .
T Consensus         4 ~~~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~   83 (276)
T 2j5i_A            4 YEGRWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGP   83 (276)
T ss_dssp             CTTCCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSC
T ss_pred             ccCCCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccch
Confidence            3456678999999999999999999999999999999999999999999999999999999999999999874211   1


Q ss_pred             chhHHH----HHHH-Hhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhc
Q psy9494          87 TKLFDD----FREF-LQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYAL  159 (314)
Q Consensus        87 ~~~~~~----~~~~-~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~  159 (314)
                      ......    .... +..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------  147 (276)
T 2j5i_A           84 EILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWG----------------  147 (276)
T ss_dssp             TTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGT----------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccC----------------
Confidence            111111    1222 333  89999999999999999999999999999999999999999999                


Q ss_pred             ccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHH
Q psy9494         160 HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQ  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~  239 (314)
                                          +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++
T Consensus       148 --------------------l~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~  207 (276)
T 2j5i_A          148 --------------------IPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARN  207 (276)
T ss_dssp             --------------------CCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHH
T ss_pred             --------------------CCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHH
Confidence                                777899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHH-HHHHHHHHHhhhhchHHHHHH-HHHHHH----------hhhHHHHHHhcC--CCCCCCC
Q psy9494         240 MSKLSQS-MLADRATVLSECETCREEWMS-ERKHYI----------GISFELKFLQKK--KKAKNGH  292 (314)
Q Consensus       240 la~~~~~-~~~~K~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~af~ekr--~p~~~~~  292 (314)
                      |++.||. ++.+|+.++.......++.+. +.....          ......+|+|||  +|.|++.
T Consensus       208 la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~~~~  274 (276)
T 2j5i_A          208 LLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDKSIKPGLQAY  274 (276)
T ss_dssp             HHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred             HHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcccCCCCcccC
Confidence            9999999 999999998766544333222 111110          011126999998  9999875

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=4.7e-52  Score=383.65  Aligned_cols=238  Identities=20%  Similarity=0.274  Sum_probs=186.4

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC---C-ch
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP---D-TK   88 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~-~~   88 (314)
                      .+..|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....   . ..
T Consensus         4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (256)
T 3qmj_A            4 SMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE   83 (256)
T ss_dssp             --CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCC
T ss_pred             CcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999874311   0 11


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        84 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------------  140 (256)
T 3qmj_A           84 GKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLG-----------------------  140 (256)
T ss_dssp             CSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC------------------------
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccC-----------------------
Confidence            11222333332  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||.
T Consensus       141 -------------l~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~  207 (256)
T 3qmj_A          141 -------------VAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPIS  207 (256)
T ss_dssp             ---------------CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHH
T ss_pred             -------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHH
Confidence                         7778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCC
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKK  286 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~  286 (314)
                       ++.+|+.++.......++.+..+.......+        ..+|+|||+
T Consensus       208 a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          208 SLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             HHHHHHHHHHCC-------------------------------------
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence             9999999987665444433322211111111        168999985

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.8e-51  Score=378.99  Aligned_cols=235  Identities=23%  Similarity=0.295  Sum_probs=200.8

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCC---CCchhHH--
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN---PDTKLFD--   91 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~~~--   91 (314)
                      |.++ +++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...   .......  
T Consensus         2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   80 (253)
T 1uiy_A            2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHS   80 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHH
Confidence            5678 899999999999999999999999999999999999999999999999999999999987542   1111111  


Q ss_pred             H-HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          92 D-FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        92 ~-~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      . +.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        81 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G-------------------------  135 (253)
T 1uiy_A           81 LSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIG-------------------------  135 (253)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHT-------------------------
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccC-------------------------
Confidence            1 2233332  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|++| +++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|++.||. +
T Consensus       136 -----------l~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  203 (253)
T 1uiy_A          136 -----------FVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSL  203 (253)
T ss_dssp             -----------CCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred             -----------cCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHH
Confidence                       777888 999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCC
Q psy9494         248 LADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAK  289 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~  289 (314)
                      +.+|+.++.......++.+..+.......        ...+|++||+|.|
T Consensus       204 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~  253 (253)
T 1uiy_A          204 RLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF  253 (253)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCCC
Confidence            99999998876654444333222111111        1269999999987

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.6e-51  Score=380.40  Aligned_cols=234  Identities=24%  Similarity=0.394  Sum_probs=193.8

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHH
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDD   92 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   92 (314)
                      .++.|.++++++|++||||||++.|+||.+|+.+|.++++++++| ++|+|||||.|++||+|+|++...  ......+.
T Consensus        19 ~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~--~~~~~~~~   95 (264)
T 3he2_A           19 PGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA--FAADYPDR   95 (264)
T ss_dssp             ---CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT--TGGGHHHH
T ss_pred             CCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch--hhHHHHHH
Confidence            456799999999999999999999999999999999999999998 999999999999999999998421  11122233


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      +.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        96 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------------  148 (264)
T 3he2_A           96 LIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYG---------------------------  148 (264)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHT---------------------------
T ss_pred             HHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccC---------------------------
Confidence            3333333  89999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               +.|+.|++++|++++|..+|++++++|++++|+||+++||||++++    .+++.++|++|++.||. ++.
T Consensus       149 ---------l~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~~  215 (264)
T 3he2_A          149 ---------LALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQH  215 (264)
T ss_dssp             ---------CCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHHH
T ss_pred             ---------cCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHHH
Confidence                     7778899999999999999999999999999999999999999986    46899999999999999 999


Q ss_pred             HHHHHHhhh--hch-HHHH--H----HHHHHHHhhhHHHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSEC--ETC-REEW--M----SERKHYIGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~--~~~-~~~~--~----~~~~~~~~~~~~~af~ekr~p~~~~~  292 (314)
                      +|+.++...  +.. ..+.  .    ..++..+++   .||+|||+|.|+|+
T Consensus       216 ~K~~l~~~~~~~~~~~~e~~~~~~~~~s~d~~Eg~---~AF~ekR~P~f~g~  264 (264)
T 3he2_A          216 AKRVLNDDGAIEEAWPAHKELFDKAWGSQDVIEAQ---VARMEKRPPKFQGA  264 (264)
T ss_dssp             HHHHHHTSSCSCCCCHHHHHHHHHHHTSHHHHHHH---HHHHTTSCCCCCCC
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHH---HHHhcCCCCCCCCC
Confidence            999998762  111 1111  1    111222222   69999999999985

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=2.1e-51  Score=380.36  Aligned_cols=240  Identities=23%  Similarity=0.328  Sum_probs=202.8

Q ss_pred             ccccEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C-ch
Q psy9494          13 LVSSVCTKKILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D-TK   88 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itln-rp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~   88 (314)
                      .++.|.++++++|++|||| ||++.|++|.+|+.+|.+++++++.|+ +|+|||||.|++||+|+|++++....  . ..
T Consensus         3 ~~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 2gtr_A            3 RYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR   81 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred             ccceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence            3567899999999999999 699999999999999999999999987 59999999999999999999874311  0 00


Q ss_pred             ----hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccc
Q psy9494          89 ----LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVP  162 (314)
Q Consensus        89 ----~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~  162 (314)
                          ....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                   
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G-------------------  142 (261)
T 2gtr_A           82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFG-------------------  142 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccC-------------------
Confidence                11112222322  89999999999999999999999999999999999999999999                   


Q ss_pred             cccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         163 RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                                       +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++
T Consensus       143 -----------------l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  205 (261)
T 2gtr_A          143 -----------------QSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELAS  205 (261)
T ss_dssp             -----------------CCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             -----------------CCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHh
Confidence                             777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCC
Q psy9494         243 LSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAK  289 (314)
Q Consensus       243 ~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~  289 (314)
                      .||. ++.+|+.++.......++.+..+.......+        ..+|+|||+|.|
T Consensus       206 ~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f  261 (261)
T 2gtr_A          206 CNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF  261 (261)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence            9999 9999999987665444443332222111111        279999999987

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=1.6e-51  Score=386.89  Aligned_cols=243  Identities=15%  Similarity=0.214  Sum_probs=204.6

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCC----
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPD----   86 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~----   86 (314)
                      ..++.|.++++++|++||||||+ .|+||.+|+.+|.++++++++|+++|+|||||.| ++||+|.|++++.....    
T Consensus         6 ~~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   84 (287)
T 3gkb_A            6 DAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQEL   84 (287)
T ss_dssp             -CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchh
Confidence            35678999999999999999998 7999999999999999999999999999999998 79999999998753210    


Q ss_pred             ----c---hhHHHHHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeC-CeEeeccccccccccccccccchhhhh
Q psy9494          87 ----T---KLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEE-NVLMGFYNRRFVYLKDSLLSSGVVLYA  158 (314)
Q Consensus        87 ----~---~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~G~~~~~~~~~g~~~~~  158 (314)
                          .   .....+...+. ++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|               
T Consensus        85 ~~~~~~~~~~~~~~~~~l~-~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lG---------------  148 (287)
T 3gkb_A           85 AASAPADVNVFQAVGELIR-HQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMG---------------  148 (287)
T ss_dssp             HHTSCTTCCTTHHHHHHHH-HCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGT---------------
T ss_pred             hHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccC---------------
Confidence                0   01112222222 89999999999999999999999999999999 999999999999               


Q ss_pred             cccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         159 LHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                                           +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++|+
T Consensus       149 ---------------------l~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~  207 (287)
T 3gkb_A          149 ---------------------IIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVAR  207 (287)
T ss_dssp             ---------------------SCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHH
T ss_pred             ---------------------CCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHH
Confidence                                 77789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHH-------hhhHHHHHHhcCC--CCCCCCcC
Q psy9494         239 QMSKLSQS-MLADRATVLSECETCREEWMSERKHYI-------GISFELKFLQKKK--KAKNGHLV  294 (314)
Q Consensus       239 ~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~af~ekr~--p~~~~~~~  294 (314)
                      +|++.||. ++.+|+.++....  .+.+..|.....       ......||+|||+  |.|++++.
T Consensus       208 ~la~~~p~a~~~~K~~l~~~~~--~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f~~~l~  271 (287)
T 3gkb_A          208 NIAALPDGVIEAAKRSLPADDL--KEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAGERDLE  271 (287)
T ss_dssp             HHHTSCTTHHHHHHHHSCCCCC--HHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHHHHTHH
T ss_pred             HHHcCCHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCchhhhHH
Confidence            99999999 9999999876421  122222211110       0011269999988  99998864

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=8.2e-51  Score=378.29  Aligned_cols=239  Identities=14%  Similarity=0.196  Sum_probs=194.3

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C---c
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D---T   87 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~---~   87 (314)
                      .++.|.++++++|++||||||+++|++|.+|+.+|.+++++++.| ++|+|||||.|++||+|+|++++....  .   .
T Consensus         5 ~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (267)
T 3hp0_A            5 TYQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQA   83 (267)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSC
T ss_pred             CCceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHHHH
Confidence            367899999999999999999999999999999999999999997 699999999999999999999875421  1   1


Q ss_pred             hhHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          88 KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        88 ~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                      .....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                      
T Consensus        84 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------------  141 (267)
T 3hp0_A           84 SSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFG----------------------  141 (267)
T ss_dssp             CCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGT----------------------
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccC----------------------
Confidence            122233333333  89999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|++ ++++|++++|..+|++++++|++++|+||+++||||+++++.+  ..+.+++++|+..||
T Consensus       142 --------------l~p~~-g~~~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p  204 (267)
T 3hp0_A          142 --------------LYPAC-VLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNK  204 (267)
T ss_dssp             --------------CCCTT-THHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCH
T ss_pred             --------------cCchh-HHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCH
Confidence                          56665 4778999999999999999999999999999999999998644  357899999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      . ++.+|+.++.......+....+.... ...        ...||+|||+|.|+..
T Consensus       205 ~a~~~~K~~l~~~~~~~~~~~~~e~~~~-~~~~~s~d~~Eg~~AF~ekr~P~~~~~  259 (267)
T 3hp0_A          205 KGIAHYKQFMSSLDHQVSRAKATALTAN-QDMFSDPQNQMGIIRYVETGQFPWEDQ  259 (267)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHTTSTTHHHHHHHHTTSCCC-----
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHH-HHHhCCHHHHHHHHHHHhcCCCCCCCC
Confidence            9 99999999876433222222222111 111        1279999999999864

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=4.1e-50  Score=372.90  Aligned_cols=238  Identities=14%  Similarity=0.138  Sum_probs=207.6

Q ss_pred             HhhhccccEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc
Q psy9494           9 AMLRLVSSVCTKKIL-NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT   87 (314)
Q Consensus         9 ~~~~~~~~v~~~~~~-~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~   87 (314)
                      .....++.|.+++++ +|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....+.
T Consensus        17 ~~~~~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~   96 (263)
T 2j5g_A           17 EYFTKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNP   96 (263)
T ss_dssp             GGGGSCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSH
T ss_pred             cccCCCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCH
Confidence            334456679999999 9999999999999999999999999999999999999999999999999999999998653222


Q ss_pred             hh----HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeec-cccccccccccccccchhhhhcc
Q psy9494          88 KL----FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF-YNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        88 ~~----~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~-pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                      ..    ...+...+..  ++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|                 
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lG-----------------  158 (263)
T 2j5g_A           97 REWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAG-----------------  158 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHT-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccc-----------------
Confidence            11    1112222332  999999999999999 5999999999999999999999 999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|
T Consensus       159 -------------------l~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~l  219 (263)
T 2j5g_A          159 -------------------IVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTL  219 (263)
T ss_dssp             -------------------CCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHH
T ss_pred             -------------------cCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHH
Confidence                               7788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhHHHHHHhcCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKK  286 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~ekr~  286 (314)
                      ++.||. ++.+|+.++.......++.+..+...+++.   ||++||.
T Consensus       220 a~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~eg~~---af~~~~~  263 (263)
T 2j5g_A          220 AKQPTLNLRYTRVALTQRLKRLVNEGIGYGLALEGIT---ATDLRNT  263 (263)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTC-
T ss_pred             HhCCHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhHH---HHHhccC
Confidence            999999 999999999877666655555555555654   9999973

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=2.6e-50  Score=370.60  Aligned_cols=212  Identities=23%  Similarity=0.346  Sum_probs=189.2

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEc-CCCCccccCCcccccCCCCchh----HH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYG-QEGNFCSGFDLHELDENPDTKL----FD   91 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg-~g~~F~aG~Dl~~~~~~~~~~~----~~   91 (314)
                      |.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+||||| .|++||+|+|++++........    ..
T Consensus         2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (250)
T 2a7k_A            2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (250)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHH
Confidence            567889999999999999999999999999999999999999999999999 9999999999998765332111    11


Q ss_pred             HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          92 DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        92 ~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      .+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                          
T Consensus        82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------------  135 (250)
T 2a7k_A           82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHG--------------------------  135 (250)
T ss_dssp             HHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGT--------------------------
T ss_pred             HHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccC--------------------------
Confidence            12233333  89999999999999999999999999999999999999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                +.|++|++ +|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||. ++
T Consensus       136 ----------l~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  204 (250)
T 2a7k_A          136 ----------IGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI  204 (250)
T ss_dssp             ----------CCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ----------CCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                      77788889 9999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHH
Q psy9494         249 ADRATVLSECETCREEW  265 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~  265 (314)
                      .+|+.++.......++.
T Consensus       205 ~~K~~l~~~~~~~~~~~  221 (250)
T 2a7k_A          205 NTKRAVNKPFIHLLEQT  221 (250)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcCHHHH
Confidence            99999987665444433

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=8.9e-51  Score=391.88  Aligned_cols=245  Identities=15%  Similarity=0.161  Sum_probs=200.3

Q ss_pred             hhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC---C
Q psy9494          11 LRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP---D   86 (314)
Q Consensus        11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~   86 (314)
                      ....+.|.++++|+|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||+| ++||+|+|++++....   .
T Consensus         5 t~~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~   84 (353)
T 4hdt_A            5 TAKNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADG   84 (353)
T ss_dssp             ---CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTS
T ss_pred             cCCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhh
Confidence            44567899999999999999999999999999999999999999999999999999998 7999999999875321   1


Q ss_pred             chhH---HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccc
Q psy9494          87 TKLF---DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHV  161 (314)
Q Consensus        87 ~~~~---~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~  161 (314)
                      ....   ......+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                  
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iG------------------  146 (353)
T 4hdt_A           85 AEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIG------------------  146 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccc------------------
Confidence            1111   112222222  89999999999999999999999999999999999999999999                  


Q ss_pred             ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHH-----
Q psy9494         162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTR-----  236 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~-----  236 (314)
                                        +.|+.|++++|+|++| .+|++|++||++++|+||+++||||++||++++.+.++++     
T Consensus       147 ------------------l~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~  207 (353)
T 4hdt_A          147 ------------------FIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGV  207 (353)
T ss_dssp             ------------------CCCCTTHHHHHHTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCH
T ss_pred             ------------------cCCCccceehhhhhhh-HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhch
Confidence                              7778999999999999 6999999999999999999999999999999998887765     


Q ss_pred             --------------------------------------------------HHHHHhCCHH-HHHHHHHHHhhhhc-hHHH
Q psy9494         237 --------------------------------------------------AIQMSKLSQS-MLADRATVLSECET-CREE  264 (314)
Q Consensus       237 --------------------------------------------------a~~la~~~~~-~~~~K~~~~~~~~~-~~~~  264 (314)
                                                                        ++.|++++|. ++.+|+.+++.... .+++
T Consensus       208 ~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e  287 (353)
T 4hdt_A          208 DAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLED  287 (353)
T ss_dssp             HHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             hHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHH
Confidence                                                              4558899999 99999999987653 3444


Q ss_pred             HHHHHHHHHhhhH--------HHHHH--hcCCCCCCCC
Q psy9494         265 WMSERKHYIGISF--------ELKFL--QKKKKAKNGH  292 (314)
Q Consensus       265 ~~~~~~~~~~~~~--------~~af~--ekr~p~~~~~  292 (314)
                      .+..+.......+        ..||+  |||+|+|+-.
T Consensus       288 ~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p~  325 (353)
T 4hdt_A          288 TLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRPA  325 (353)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSSC
T ss_pred             HHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCCC
Confidence            4333222111111        16999  9999999854

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=8.8e-51  Score=379.72  Aligned_cols=235  Identities=23%  Similarity=0.283  Sum_probs=200.7

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-hh--
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-KL--   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~--   89 (314)
                      +.+.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++...... ..  
T Consensus        26 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~  105 (276)
T 3rrv_A           26 MPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRA  105 (276)
T ss_dssp             CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHH
T ss_pred             CCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHH
Confidence            345799999999999999999999999999999999999999999999999999999999999999987542111 11  


Q ss_pred             --HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          90 --FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        90 --~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                        ...+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                      
T Consensus       106 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G----------------------  163 (276)
T 3rrv_A          106 KTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVG----------------------  163 (276)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHT----------------------
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccC----------------------
Confidence              1112223332  89999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    +.|++|++++|++++|..+|++++++|++++|+||+++||||+++  +++.+++.++|++|+..||
T Consensus       164 --------------l~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~  227 (276)
T 3rrv_A          164 --------------LVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQ  227 (276)
T ss_dssp             --------------CCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCH
T ss_pred             --------------cCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCH
Confidence                          777899999999999999999999999999999999999999999  8999999999999999999


Q ss_pred             H-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcC
Q psy9494         246 S-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKK  285 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr  285 (314)
                      . ++.+|+.++.......++.+..+.......        ...||+|||
T Consensus       228 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          228 QAVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            9 999999998766554444333322211111        126999997

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=2.2e-50  Score=375.86  Aligned_cols=246  Identities=22%  Similarity=0.320  Sum_probs=202.4

Q ss_pred             hhhccccEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCC
Q psy9494          10 MLRLVSSVCTKK----ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDEN   84 (314)
Q Consensus        10 ~~~~~~~v~~~~----~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~   84 (314)
                      |... ..+.++.    +++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||||.| ++||+|+|++++...
T Consensus         4 ~~~~-~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~   82 (272)
T 1hzd_A            4 MKTE-DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM   82 (272)
T ss_dssp             ---C-CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS
T ss_pred             ccCC-CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc
Confidence            4443 3455543    689999999999999999999999999999999999999999999998 799999999987643


Q ss_pred             CCchh---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhc
Q psy9494          85 PDTKL---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYAL  159 (314)
Q Consensus        85 ~~~~~---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~  159 (314)
                      .....   ...+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G----------------  146 (272)
T 1hzd_A           83 SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLA----------------  146 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGT----------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccC----------------
Confidence            21111   1122223333  89999999999999999999999999999999999999999999                


Q ss_pred             ccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCch----HHHHHH
Q psy9494         160 HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTA----VGEAMT  235 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l----~~~a~~  235 (314)
                                          +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++    .+.+.+
T Consensus       147 --------------------l~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~  206 (272)
T 1hzd_A          147 --------------------IIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALD  206 (272)
T ss_dssp             --------------------CCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHH
T ss_pred             --------------------CCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHH
Confidence                                77789999999999999999999999999999999999999999998774    567889


Q ss_pred             HHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         236 RAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       236 ~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      ++++|+..||. ++.+|+.++.......++.+..+.......        ...+|++||+|.|+|+
T Consensus       207 ~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~g~  272 (272)
T 1hzd_A          207 LAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE  272 (272)
T ss_dssp             HHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence            99999999999 999999998776554444333222111111        1269999999999874

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=3e-50  Score=376.23  Aligned_cols=239  Identities=15%  Similarity=0.144  Sum_probs=202.8

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC--C----c
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP--D----T   87 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~----~   87 (314)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....  .    .
T Consensus         8 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   87 (280)
T 1pjh_A            8 NEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP   87 (280)
T ss_dssp             BTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred             CCceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence            567999999999999999999999999999999999999999999999999999999999999999874321  1    0


Q ss_pred             h----hHHHH----HHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEe-CCeEeeccccccccccccccccchhh
Q psy9494          88 K----LFDDF----REFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE-ENVLMGFYNRRFVYLKDSLLSSGVVL  156 (314)
Q Consensus        88 ~----~~~~~----~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~~~~~~~~g~~~  156 (314)
                      .    ....+    .+.+..  ++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|             
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lG-------------  154 (280)
T 1pjh_A           88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLG-------------  154 (280)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHT-------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcC-------------
Confidence            1    00111    122222  8999999999999999999999999999999 9999999999999             


Q ss_pred             hhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC-----chHH
Q psy9494         157 YALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCG-----TAVG  231 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~-----~l~~  231 (314)
                                             +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++     ++.+
T Consensus       155 -----------------------l~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~  211 (280)
T 1pjh_A          155 -----------------------LITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNA  211 (280)
T ss_dssp             -----------------------CCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHH
T ss_pred             -----------------------CCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHH
Confidence                                   777899999999999999999999999999999999999999999986     7888


Q ss_pred             HHH-HHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhHHHHHHhcCCC-CCCCC
Q psy9494         232 EAM-TRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKK-AKNGH  292 (314)
Q Consensus       232 ~a~-~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~ekr~p-~~~~~  292 (314)
                      ++. +++++|+..||. ++.+|+.++.......+....+ +...+   ..+|++||+| .|.+-
T Consensus       212 ~a~~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~-d~~e~---~~af~~kr~~e~~~~f  271 (280)
T 1pjh_A          212 KVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSV-EVNES---LKYWVDGEPLKRFRQL  271 (280)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHH---HHHHHHTHHHHHHTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHHhhhH-HHHHH---HHHHhCCccHHHHHHH
Confidence            885 999999999999 9999999987654433332222 22223   3599999999 78764

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.1e-49  Score=367.92  Aligned_cols=234  Identities=17%  Similarity=0.278  Sum_probs=190.6

Q ss_pred             cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHH---H
Q psy9494          16 SVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFD---D   92 (314)
Q Consensus        16 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~---~   92 (314)
                      .|.++++++|++||||||++.|++|.+|+.+|.++++++++ +++|+|||||.|++||+|+|++++..........   .
T Consensus         8 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   86 (254)
T 3isa_A            8 PLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVR   86 (254)
T ss_dssp             SEEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHH
Confidence            48999999999999999999999999999999999999987 4899999999999999999999986543322111   1


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      +...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                           
T Consensus        87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G---------------------------  139 (254)
T 3isa_A           87 IEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFG---------------------------  139 (254)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGT---------------------------
T ss_pred             HHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccC---------------------------
Confidence            2222333  99999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               +.|   ++++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.++++++++.||. ++.
T Consensus       140 ---------l~p---g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  207 (254)
T 3isa_A          140 ---------LVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRAT  207 (254)
T ss_dssp             ---------CCC---SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             ---------ccH---HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHH
Confidence                     555   4789999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHH----HHHHHHHhhhHHHHHHhcCCCCCCCC
Q psy9494         250 DRATVLSECETCREEWM----SERKHYIGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~----~~~~~~~~~~~~~af~ekr~p~~~~~  292 (314)
                      +|+.++........+.+    ...+..++   ..+|+|||+|.|+..
T Consensus       208 ~K~~l~~~~~~~e~~~~~~~~~s~d~~eg---i~af~ekr~p~~~~~  251 (254)
T 3isa_A          208 LHRVLRDDHDDADLAALARSAAQPGFKAR---IRDYLAQPAAEGHHH  251 (254)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHSTTHHHH---HHHHHHC--------
T ss_pred             HHHHHhhhhHHHHHHHHHHHhCCHHHHHH---HHHHHhcCCCCCCCC
Confidence            99998543221111111    11111222   269999999999864

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=7.9e-50  Score=382.33  Aligned_cols=244  Identities=18%  Similarity=0.298  Sum_probs=197.0

Q ss_pred             hhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-
Q psy9494          10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-   88 (314)
Q Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   88 (314)
                      +...++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|++||+|||||.|++||+|.|++++....... 
T Consensus        30 ~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~  109 (333)
T 3njd_A           30 DFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAG  109 (333)
T ss_dssp             CTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC------------
T ss_pred             CCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccc
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999875432110 


Q ss_pred             --------------------------------hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeE
Q psy9494          89 --------------------------------LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVL  134 (314)
Q Consensus        89 --------------------------------~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~  134 (314)
                                                      ....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~  189 (333)
T 3njd_A          110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK  189 (333)
T ss_dssp             ---CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence                                            01111222222  89999999999999999999999999999999999


Q ss_pred             eeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHH
Q psy9494         135 MGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREA  214 (314)
Q Consensus       135 f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA  214 (314)
                      |++||+++|                                    +.|+.|   ++++++|..+|++|+++|++|+|+||
T Consensus       190 f~~pe~~lG------------------------------------~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA  230 (333)
T 3njd_A          190 IGYPPMRVW------------------------------------GVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQA  230 (333)
T ss_dssp             EECGGGGTT------------------------------------CCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHH
T ss_pred             eechhhcee------------------------------------ccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            999999999                                    444544   57999999999999999999999999


Q ss_pred             HHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhch-HHH--HH-----------HHHHHHHhh---h
Q psy9494         215 LDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECETC-REE--WM-----------SERKHYIGI---S  276 (314)
Q Consensus       215 ~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~-~~~--~~-----------~~~~~~~~~---~  276 (314)
                      +++||||+|+|++++.+++.++|++|++.||. ++.+|+.++...+.. ...  ..           .+...+...   .
T Consensus       231 ~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~  310 (333)
T 3njd_A          231 AEWGLAVEAPDPADLDARTERLVERIAAMPVNQLIMAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVATAREH  310 (333)
T ss_dssp             HHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChHHHHHHHHhhhH
Confidence            99999999999999999999999999999999 999999998775431 111  11           011111000   0


Q ss_pred             HHHHHHhcCCCCCCCC
Q psy9494         277 FELKFLQKKKKAKNGH  292 (314)
Q Consensus       277 ~~~af~ekr~p~~~~~  292 (314)
                      ..++|+|||+|.|.|.
T Consensus       311 g~~a~~ekR~~~f~~~  326 (333)
T 3njd_A          311 GFREAVRRRDEPMGDH  326 (333)
T ss_dssp             CHHHHHHHHHGGGTCC
T ss_pred             HHHHHHHhcCCCCCCc
Confidence            0169999999999996

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1.1e-49  Score=369.65  Aligned_cols=247  Identities=18%  Similarity=0.202  Sum_probs=193.2

Q ss_pred             hhhccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCC---
Q psy9494          10 MLRLVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENP---   85 (314)
Q Consensus        10 ~~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---   85 (314)
                      |...++.+.++. +++|++||||||++ |++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++....   
T Consensus         1 m~~~~~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   79 (263)
T 3l3s_A            1 MSLSQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADP   79 (263)
T ss_dssp             -------CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----
T ss_pred             CCCCccceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccc
Confidence            334455666665 88999999999999 9999999999999999999999999999999999999999999987542   


Q ss_pred             --CchhH----HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhh
Q psy9494          86 --DTKLF----DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLY  157 (314)
Q Consensus        86 --~~~~~----~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~  157 (314)
                        .....    ..+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|              
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------  145 (263)
T 3l3s_A           80 DEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNG--------------  145 (263)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTT--------------
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccC--------------
Confidence              11111    112223332  99999999999999999999999999999999999999999999              


Q ss_pred             hcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHH
Q psy9494         158 ALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRA  237 (314)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a  237 (314)
                                            +.| +|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++
T Consensus       146 ----------------------l~~-~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a  202 (263)
T 3l3s_A          146 ----------------------GFC-TTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLA  202 (263)
T ss_dssp             ----------------------SCC-HHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHH
T ss_pred             ----------------------CCC-ccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHH
Confidence                                  554 678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhHHHHHHhcCCCCCCCCcC
Q psy9494         238 IQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKKKAKNGHLV  294 (314)
Q Consensus       238 ~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~ekr~p~~~~~~~  294 (314)
                      ++|++.||. ++.+|+.++.......++.+..+.......+...-.+.....|.+|..
T Consensus       203 ~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~~~  260 (263)
T 3l3s_A          203 GALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGHHH  260 (263)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhccCc
Confidence            999999999 999999999887766655554443333333332223344455666644

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=9.2e-50  Score=369.31  Aligned_cols=237  Identities=19%  Similarity=0.271  Sum_probs=190.2

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-CCCccccCCcccccCCCCchh---HHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-EGNFCSGFDLHELDENPDTKL---FDD   92 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~   92 (314)
                      |.++++++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||. |++||+|+|++++........   ...
T Consensus         7 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   85 (260)
T 1sg4_A            7 VEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKA   85 (260)
T ss_dssp             EEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHH
T ss_pred             EEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHH
Confidence            556677899999999997 699999999999999999999999999999999 799999999998864321111   112


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEe--CCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVE--ENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~--~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      +.+.+..  ++||||||+|||+|+|||++|+++||+|||+  ++++|++||+++|                         
T Consensus        86 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~G-------------------------  140 (260)
T 1sg4_A           86 VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLG-------------------------  140 (260)
T ss_dssp             HHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGT-------------------------
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhC-------------------------
Confidence            2233333  8999999999999999999999999999999  8999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|+..||. +
T Consensus       141 -----------l~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  209 (260)
T 1sg4_A          141 -----------IIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHAR  209 (260)
T ss_dssp             -----------CCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             -----------CCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHH
Confidence                       7778999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHH-HHHHHH-------hhhHHHHHHhcCCCCCC
Q psy9494         248 LADRATVLSECETCREEWMS-ERKHYI-------GISFELKFLQKKKKAKN  290 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~af~ekr~p~~~  290 (314)
                      +.+|+.++.......++.+. +...+.       ......+|++||+|..+
T Consensus       210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~~  260 (260)
T 1sg4_A          210 QLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEKG  260 (260)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC----------
T ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCC
Confidence            99999998765433322221 111110       00112699999998753

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=2.9e-49  Score=382.47  Aligned_cols=246  Identities=19%  Similarity=0.247  Sum_probs=204.2

Q ss_pred             hhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCC---C
Q psy9494          10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDEN---P   85 (314)
Q Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~---~   85 (314)
                      |....+.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++...   .
T Consensus         1 m~~~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~   80 (363)
T 3bpt_A            1 MTDAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAK   80 (363)
T ss_dssp             -CCCCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSS
T ss_pred             CCCCCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccc
Confidence            345566799999999999999999999999999999999999999999999999999998 899999999987431   1


Q ss_pred             Cc---hhHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          86 DT---KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        86 ~~---~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                      ..   .........+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                 
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G-----------------  143 (363)
T 3bpt_A           81 QKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIG-----------------  143 (363)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTT-----------------
T ss_pred             cHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccC-----------------
Confidence            11   111112222222  99999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHH-------
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEA-------  233 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a-------  233 (314)
                                         +.|++|++++|++++|. +|++|++||++++|+||+++||||+++|++++.+.+       
T Consensus       144 -------------------l~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~  203 (363)
T 3bpt_A          144 -------------------LFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALK  203 (363)
T ss_dssp             -------------------SCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCS
T ss_pred             -------------------CCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcc
Confidence                               77789999999999997 999999999999999999999999999998876432       


Q ss_pred             --------------------------------------------H---------------HHHHHHHhCCHH-HHHHHHH
Q psy9494         234 --------------------------------------------M---------------TRAIQMSKLSQS-MLADRAT  253 (314)
Q Consensus       234 --------------------------------------------~---------------~~a~~la~~~~~-~~~~K~~  253 (314)
                                                                  .               +++++|++.||. ++.+|+.
T Consensus       204 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~  283 (363)
T 3bpt_A          204 SPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQ  283 (363)
T ss_dssp             SCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHH
Confidence                                                        2               578899999999 9999999


Q ss_pred             HHhhhhchHHHHHHHHHHHHhhhH--------HHHHH-hc-CCCCCCCC
Q psy9494         254 VLSECETCREEWMSERKHYIGISF--------ELKFL-QK-KKKAKNGH  292 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~-ek-r~p~~~~~  292 (314)
                      ++........+.+..+.......+        ..||+ +| |+|.|+++
T Consensus       284 l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK~r~P~~~~~  332 (363)
T 3bpt_A          284 LMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWKPA  332 (363)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSCCCCCCCSSC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeCCCCCCCCCCC
Confidence            988766555444333222111111        16999 88 99999986

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1e-49  Score=368.65  Aligned_cols=218  Identities=22%  Similarity=0.290  Sum_probs=190.7

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---h
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---L   89 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~   89 (314)
                      .++.|.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|+.||+|.|++++.......   .
T Consensus        10 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   89 (258)
T 3lao_A           10 GPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRY   89 (258)
T ss_dssp             SSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCC
T ss_pred             CCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHH
Confidence            5667999999999999999999999999999999999999999999999999999999999999999875432111   1


Q ss_pred             HH---HHHHHHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          90 FD---DFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        90 ~~---~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ..   .....+..++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        90 ~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-----------------------  146 (258)
T 3lao_A           90 PDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRG-----------------------  146 (258)
T ss_dssp             CTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTC-----------------------
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccC-----------------------
Confidence            11   1111120279999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||.
T Consensus       147 -------------l~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  213 (258)
T 3lao_A          147 -------------IPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPL  213 (258)
T ss_dssp             -------------CCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHH
T ss_pred             -------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHH
Confidence                         7778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHH
Q psy9494         247 -MLADRATVLSECETCREEWM  266 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~  266 (314)
                       ++.+|+.++.......++.+
T Consensus       214 a~~~~K~~l~~~~~~~~~~~l  234 (258)
T 3lao_A          214 AVRAALQSAFQGRDEGDDAAL  234 (258)
T ss_dssp             HHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHhhcCCHHHHH
Confidence             99999999987665544443

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=2.3e-48  Score=363.64  Aligned_cols=243  Identities=21%  Similarity=0.224  Sum_probs=197.9

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-hhH
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-KLF   90 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~   90 (314)
                      +.++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus        17 ~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~   96 (279)
T 3t3w_A           17 RTEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLE   96 (279)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHH
T ss_pred             ccCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchH
Confidence            3467899999999999999999999999999999999999999999999999999999999999999988653211 101


Q ss_pred             -------HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccc
Q psy9494          91 -------DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHV  161 (314)
Q Consensus        91 -------~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~  161 (314)
                             ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                  
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G------------------  158 (279)
T 3t3w_A           97 FIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMD------------------  158 (279)
T ss_dssp             HHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcC------------------
Confidence                   111122222  89999999999999999999999999999999999999999999                  


Q ss_pred             ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494         162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  241 (314)
                                        +++.++ ..+ ++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+
T Consensus       159 ------------------l~~~~~-~~~-~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  218 (279)
T 3t3w_A          159 ------------------IGGVEY-HGH-TWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIA  218 (279)
T ss_dssp             ------------------CSSCSS-CCH-HHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             ------------------CCCchH-HHH-HhhcCHHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHH
Confidence                              654333 333 999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHH-HHHHHHHHHhhhhc-hHHHHHHHHHHHHhhhHHHHHHhcCCCCCCCC
Q psy9494         242 KLSQS-MLADRATVLSECET-CREEWMSERKHYIGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       242 ~~~~~-~~~~K~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~ekr~p~~~~~  292 (314)
                      +.||. ++.+|+.++...+. ..++.+.............+|.+.+.|.|+|-
T Consensus       219 ~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (279)
T 3t3w_A          219 KMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDIHQTGHGNAMSVSGWPVLVDI  271 (279)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTSSCC----
T ss_pred             cCCHHHHHHHHHHHHHhhhcccHHHHHHHHhhHHHHHHHHHHHhcCCccccCH
Confidence            99999 99999999877653 34444433333334444469999999999883

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=9e-49  Score=357.44  Aligned_cols=218  Identities=18%  Similarity=0.161  Sum_probs=190.9

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchh---H
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKL---F   90 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~---~   90 (314)
                      .+.|.++++++|++||||||+ .|++|.+|+.+|.++++++++| ++|+|||||.|++||+|.|++++........   .
T Consensus         4 ~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (233)
T 3r6h_A            4 SGPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDML   81 (233)
T ss_dssp             -CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---CHHHHHHH
T ss_pred             CCceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccChHHHHHHH
Confidence            357999999999999999985 6999999999999999999988 6999999999999999999999875422211   1


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      ....+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                         
T Consensus        82 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G-------------------------  136 (233)
T 3r6h_A           82 RGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIG-------------------------  136 (233)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGT-------------------------
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhC-------------------------
Confidence            122233333  99999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 +.|.+++++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. +
T Consensus       137 -----------l~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  205 (233)
T 3r6h_A          137 -----------MTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAH  205 (233)
T ss_dssp             -----------CCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             -----------CCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHH
Confidence                       6556788999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHH
Q psy9494         248 LADRATVLSECETCREEWMSER  269 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~  269 (314)
                      +.+|+.++.......++.+..+
T Consensus       206 ~~~K~~l~~~~~~~l~~~l~~e  227 (233)
T 3r6h_A          206 NATKLRARAEALKAIRAGIDGI  227 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999887766655554443

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=4.1e-48  Score=358.18  Aligned_cols=236  Identities=16%  Similarity=0.167  Sum_probs=201.2

Q ss_pred             hhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-
Q psy9494          10 MLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-   88 (314)
Q Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   88 (314)
                      |...++.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus        11 m~~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   90 (257)
T 1szo_A           11 YSQKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDW   90 (257)
T ss_dssp             HTTSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHH
T ss_pred             hhccCceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHH
Confidence            4333467999999999999999999999999999999999999999999999999999999999999999875321111 


Q ss_pred             --hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeec-cccccccccccccccchhhhhccccc
Q psy9494          89 --LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGF-YNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        89 --~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~-pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                        ....+.+.+..  ++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|                    
T Consensus        91 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lG--------------------  149 (257)
T 1szo_A           91 DEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSG--------------------  149 (257)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGT--------------------
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccc--------------------
Confidence              11112223332  899999999999999 5999999999999999999999 999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.
T Consensus       150 ----------------l~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~  213 (257)
T 1szo_A          150 ----------------IVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK  213 (257)
T ss_dssp             ----------------CCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTS
T ss_pred             ----------------cCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhC
Confidence                            7778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhHHHHHHhcC
Q psy9494         244 SQS-MLADRATVLSECETCREEWMSERKHYIGISFELKFLQKK  285 (314)
Q Consensus       244 ~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~ekr  285 (314)
                      ||. ++.+|+.++.......++.+..+...++.   .+|-.|.
T Consensus       214 ~~~a~~~~K~~l~~~~~~~l~~~l~~~~~~eg~---~a~~~~~  253 (257)
T 1szo_A          214 PLLARRYARKVLTRQLRRVMEADLSLGLAHEAL---AAIDLGM  253 (257)
T ss_dssp             CHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH---HHHHHC-
T ss_pred             CHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhh---hhhhccc
Confidence            999 99999999887665555544444333443   3665554

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=1.1e-48  Score=358.87  Aligned_cols=213  Identities=17%  Similarity=0.218  Sum_probs=188.2

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-hHHHHHH
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-LFDDFRE   95 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~~~   95 (314)
                      +.++++++|++||||||++.|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++....... ....+..
T Consensus         5 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   84 (243)
T 2q35_A            5 QLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSG   84 (243)
T ss_dssp             EEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHH
T ss_pred             EEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999998764211000 0011111


Q ss_pred             HHhcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494          96 FLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS  175 (314)
Q Consensus        96 ~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      .+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                                
T Consensus        85 ~l~-~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G--------------------------------  131 (243)
T 2q35_A           85 LIL-DCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYG--------------------------------  131 (243)
T ss_dssp             HHH-TCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHT--------------------------------
T ss_pred             HHH-hCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccC--------------------------------
Confidence            222 89999999999999999999999999999999999999999999                                


Q ss_pred             ccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHHHHHHH
Q psy9494         176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLADRATV  254 (314)
Q Consensus       176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~  254 (314)
                          +.|++|++++|++++|+.+|++++++|++++|+||+++||||+++|++++.+++.+++++|++.||. ++.+|+.+
T Consensus       132 ----l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  207 (243)
T 2q35_A          132 ----FTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHL  207 (243)
T ss_dssp             ----SCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ----CCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                7778999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HhhhhchHHHHH
Q psy9494         255 LSECETCREEWM  266 (314)
Q Consensus       255 ~~~~~~~~~~~~  266 (314)
                      +.......++.+
T Consensus       208 ~~~~~~~~~~~~  219 (243)
T 2q35_A          208 SADIKAKFPEAI  219 (243)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHhhhcCHHHHH
Confidence            877654444433

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=2.1e-48  Score=381.67  Aligned_cols=243  Identities=16%  Similarity=0.098  Sum_probs=203.2

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCC------
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENP------   85 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~------   85 (314)
                      .++.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....      
T Consensus        40 ~~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~  119 (407)
T 3ju1_A           40 VFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ  119 (407)
T ss_dssp             EEEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSS
T ss_pred             ccceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccc
Confidence            456688888899999999999999999999999999999999999999999999999 7999999999875321      


Q ss_pred             CchhHHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhc
Q psy9494          86 DTKLFDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYAL  159 (314)
Q Consensus        86 ~~~~~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~  159 (314)
                      .......    ...++..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                
T Consensus       120 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lG----------------  183 (407)
T 3ju1_A          120 VTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIG----------------  183 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGT----------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcC----------------
Confidence            1111111    1222222  99999999999999999999999999999999999999999999                


Q ss_pred             ccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH---H----
Q psy9494         160 HVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVG---E----  232 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~---~----  232 (314)
                                          +.|++|++++|++++| .+|++|+++|++++|+||+++||||+++|++++.+   +    
T Consensus       184 --------------------l~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~  242 (407)
T 3ju1_A          184 --------------------LYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATL  242 (407)
T ss_dssp             --------------------CCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSS
T ss_pred             --------------------CCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcc
Confidence                                7778999999999999 99999999999999999999999999999988766   3    


Q ss_pred             ------------HHH------------------------------------------------H----HHHHHhCCHH-H
Q psy9494         233 ------------AMT------------------------------------------------R----AIQMSKLSQS-M  247 (314)
Q Consensus       233 ------------a~~------------------------------------------------~----a~~la~~~~~-~  247 (314)
                                  +.+                                                |    +++|++.||. +
T Consensus       243 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~~f~~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl  322 (407)
T 3ju1_A          243 DWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLMAGSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISW  322 (407)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHHHTCSCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHH
T ss_pred             cccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHH
Confidence                        322                                                1    4789999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHH-hc-CCCCCCCC
Q psy9494         248 LADRATVLSECETCREEWMSERKHYIGISF--------ELKFL-QK-KKKAKNGH  292 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~-ek-r~p~~~~~  292 (314)
                      +.+|+.++......+++.+..+......++        ..||+ +| |+|+|+++
T Consensus       323 ~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvrAflidKdr~P~w~~~  377 (407)
T 3ju1_A          323 HLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPKWQFA  377 (407)
T ss_dssp             HHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTSCCCCCCCSSS
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCcCCCCCCC
Confidence            999999998876665555443332222211        17998 88 99999986

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.1e-47  Score=350.14  Aligned_cols=216  Identities=19%  Similarity=0.245  Sum_probs=188.8

Q ss_pred             ccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc--hhHHH
Q psy9494          15 SSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT--KLFDD   92 (314)
Q Consensus        15 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~~   92 (314)
                      +.|.++++++|++||||||+ .|++|.+|+.+|.+++++++.|  +|+|||||.|++||+|.|++++......  .....
T Consensus         6 ~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (232)
T 3ot6_A            6 DLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQ   82 (232)
T ss_dssp             HHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHH
T ss_pred             cceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhChHHHHHHHHH
Confidence            46899999999999999985 6999999999999999999987  4899999999999999999988652111  01111


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC-eEeeccccccccccccccccchhhhhccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      ..+.+..  ++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|                          
T Consensus        83 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~G--------------------------  136 (232)
T 3ot6_A           83 GSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIG--------------------------  136 (232)
T ss_dssp             HHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTT--------------------------
T ss_pred             HHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccC--------------------------
Confidence            2223332  999999999999999999999999999999998 89999999999                          


Q ss_pred             ccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HH
Q psy9494         170 LRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-ML  248 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~  248 (314)
                                +.|.+++++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.++|++|++.||. ++
T Consensus       137 ----------l~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  206 (232)
T 3ot6_A          137 ----------MTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHK  206 (232)
T ss_dssp             ----------CCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH
T ss_pred             ----------CCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                      5555777889999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHhhhhchHHHHHHHH
Q psy9494         249 ADRATVLSECETCREEWMSER  269 (314)
Q Consensus       249 ~~K~~~~~~~~~~~~~~~~~~  269 (314)
                      .+|+.++.......++.+..+
T Consensus       207 ~~K~~l~~~~~~~l~~~l~~E  227 (232)
T 3ot6_A          207 KTKLKVRKGLLDTLDAAIEQD  227 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhHHHHHHHHH
Confidence            999999988776655554433

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.5e-47  Score=360.05  Aligned_cols=211  Identities=18%  Similarity=0.260  Sum_probs=187.7

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCC-ccccCCcccccCCCCc---
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGN-FCSGFDLHELDENPDT---   87 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~-F~aG~Dl~~~~~~~~~---   87 (314)
                      ..++.|.++++++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|+. ||+|+|++++......   
T Consensus         5 ~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~   83 (289)
T 3h0u_A            5 ASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAK   83 (289)
T ss_dssp             CCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHT
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhh
Confidence            45678999999999999999998 799999999999999999999999999999999865 5567799987532110   


Q ss_pred             ---hhHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC-eEeeccccccccccccccccchhhhhccc
Q psy9494          88 ---KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVYLKDSLLSSGVVLYALHV  161 (314)
Q Consensus        88 ---~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~~~~~~~~~g~~~~~~~~  161 (314)
                         .....+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|                  
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lG------------------  145 (289)
T 3h0u_A           84 AGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIG------------------  145 (289)
T ss_dssp             TSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHT------------------
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcC------------------
Confidence               001112222222  899999999999999999999999999999998 99999999999                  


Q ss_pred             ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494         162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  241 (314)
                                        +.|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++|++|+
T Consensus       146 ------------------l~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la  207 (289)
T 3h0u_A          146 ------------------APPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMS  207 (289)
T ss_dssp             ------------------SCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHH
Confidence                              77789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHH-HHHHHHHHHhhhh
Q psy9494         242 KLSQS-MLADRATVLSECE  259 (314)
Q Consensus       242 ~~~~~-~~~~K~~~~~~~~  259 (314)
                      +.||. ++.+|+.++....
T Consensus       208 ~~~p~a~~~~K~~l~~~~~  226 (289)
T 3h0u_A          208 GFPRDALIAAKSAINAISL  226 (289)
T ss_dssp             TSCHHHHHHHHHHHHHHHS
T ss_pred             hCCHHHHHHHHHHHHhhcc
Confidence            99999 9999999988765

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=2.2e-46  Score=354.53  Aligned_cols=219  Identities=18%  Similarity=0.173  Sum_probs=188.0

Q ss_pred             cccEEE--EEeCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHhhh-----CCCccEEEEEcCCCCccccCCccccc
Q psy9494          14 VSSVCT--KKILNITLISLNRPDK----INAINLKTLDALQENIKRFED-----DTESPLAILYGQEGNFCSGFDLHELD   82 (314)
Q Consensus        14 ~~~v~~--~~~~~v~~itlnrp~~----~Nal~~~~~~eL~~al~~~~~-----d~~vr~vVltg~g~~F~aG~Dl~~~~   82 (314)
                      |+++.+  +++++|++||||||+|    +|+||.+|+.+|.+++++++.     |+++|+|||||.|++||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            455544  6689999999999998    459999999999999999987     58999999999999999999999875


Q ss_pred             CCC---Cch----hHHHHHHHHhc-----CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeecccccccccccccc
Q psy9494          83 ENP---DTK----LFDDFREFLQK-----PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLL  150 (314)
Q Consensus        83 ~~~---~~~----~~~~~~~~~~~-----~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~  150 (314)
                      ...   ...    ....+...+..     .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|       
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~G-------  181 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFD-------  181 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGT-------
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccC-------
Confidence            321   111    11111122211     58999999999999999999999999999999999999999999       


Q ss_pred             ccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchH
Q psy9494         151 SSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAV  230 (314)
Q Consensus       151 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~  230 (314)
                                                   +.|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.
T Consensus       182 -----------------------------l~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~  232 (305)
T 3m6n_A          182 -----------------------------LFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGV  232 (305)
T ss_dssp             -----------------------------CCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHH
T ss_pred             -----------------------------cCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHH
Confidence                                         777899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHH
Q psy9494         231 GEAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSER  269 (314)
Q Consensus       231 ~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~  269 (314)
                      +++.++|++|++ +|. ++.+|+.++.......++.+..+
T Consensus       233 ~~a~~~a~~la~-~p~a~~~~K~~l~~~~~~~l~~~l~~e  271 (305)
T 3m6n_A          233 AAVEQVIRESKR-TPHAWAAMQQVREMTTAVPLEEMMRIT  271 (305)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhh-ChHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence            999999999987 778 99999999988776665554443

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=3.3e-45  Score=361.16  Aligned_cols=206  Identities=20%  Similarity=0.269  Sum_probs=179.7

Q ss_pred             cccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--------C-CCccccCCcccccCC
Q psy9494          14 VSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--------E-GNFCSGFDLHELDEN   84 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--------g-~~F~aG~Dl~~~~~~   84 (314)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|++||+|||||.        | ++||+|+|++++...
T Consensus       166 ~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          166 MEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             CSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             CceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            4578999999999999999999999999999999999999999999999999994        6 799999999987543


Q ss_pred             CCc--hh--H---HHHHHHHh--------------cCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc
Q psy9494          85 PDT--KL--F---DDFREFLQ--------------KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV  143 (314)
Q Consensus        85 ~~~--~~--~---~~~~~~~~--------------~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G  143 (314)
                      ...  ..  .   ..+...+.              .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lG  325 (440)
T 2np9_A          246 GISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEG  325 (440)
T ss_dssp             CCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTC
T ss_pred             CcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccC
Confidence            211  10  0   11222222              268999999999999999999999999999999999999999999


Q ss_pred             cccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceee
Q psy9494         144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKM  223 (314)
Q Consensus       144 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~v  223 (314)
                                                          +.|++| +++|++++|..+|++|+++|+.|+|+||+++||||+|
T Consensus       326 ------------------------------------l~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~V  368 (440)
T 2np9_A          326 ------------------------------------IIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEV  368 (440)
T ss_dssp             ------------------------------------CCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEE
T ss_pred             ------------------------------------cCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence                                                666665 6899999999999999999999999999999999999


Q ss_pred             eCCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhh
Q psy9494         224 VNCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECE  259 (314)
Q Consensus       224 v~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~  259 (314)
                      ++++++.+++.+++++|+   +. ++.+|+.++....
T Consensus       369 vp~~eL~~~a~~~A~~la---~~Av~~~K~~l~~~~~  402 (440)
T 2np9_A          369 VEPDELDAAIERSLTRLD---GDAVLANRRMLNLADE  402 (440)
T ss_dssp             ECHHHHHHHHHHHHHTTC---SHHHHHHHHHHHHHHS
T ss_pred             cChHHHHHHHHHHHHHhC---HHHHHHHHHHHHhhhc
Confidence            999999999999998874   35 9999999887644

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.3e-43  Score=369.78  Aligned_cols=189  Identities=25%  Similarity=0.440  Sum_probs=171.9

Q ss_pred             EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHH
Q psy9494          18 CTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFL   97 (314)
Q Consensus        18 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   97 (314)
                      .++.+|+|++||||||+ .|+||.+|+.+|.+++++++.|++||+|||||.|++||+|+||+++...........+.+.+
T Consensus        24 ~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~~~~~~~~~~i  102 (742)
T 3zwc_A           24 YLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEI  102 (742)
T ss_dssp             EEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSCSHHHHHHHHH
T ss_pred             EEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChhHHHHHHHHHH
Confidence            34568999999999997 69999999999999999999999999999999999999999999997655443333343334


Q ss_pred             hcCCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccccc
Q psy9494          98 QKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRD  177 (314)
Q Consensus        98 ~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      . +++|||||+|||+|+|||++|+++||+|||+++++|++||+++|                                  
T Consensus       103 ~-~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lG----------------------------------  147 (742)
T 3zwc_A          103 Q-RYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLG----------------------------------  147 (742)
T ss_dssp             H-HCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGT----------------------------------
T ss_pred             H-hCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcc----------------------------------
Confidence            4 89999999999999999999999999999999999999999999                                  


Q ss_pred             ccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         178 LAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       178 ~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                        +.|++|++++|+|++|..+|++|+++|+.++|+||+++||||+|++.+ .+++|.++|++|++.++
T Consensus       148 --l~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~d-~~~~A~~~A~~ia~~~~  212 (742)
T 3zwc_A          148 --ILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSD-PVEEAIKFAQKIIDKPI  212 (742)
T ss_dssp             --CCCTTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSC-HHHHHHHHHHHHTTSCS
T ss_pred             --cCCCccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEecCch-hhHHHHHHHHHHhcCCc
Confidence              777999999999999999999999999999999999999999999876 46889999999998764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-43  Score=366.84  Aligned_cols=243  Identities=20%  Similarity=0.283  Sum_probs=193.3

Q ss_pred             hccccEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCC-CccccCCcccccCCCC---
Q psy9494          12 RLVSSVCTK-KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEG-NFCSGFDLHELDENPD---   86 (314)
Q Consensus        12 ~~~~~v~~~-~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~-~F~aG~Dl~~~~~~~~---   86 (314)
                      +.++.+.++ .+++|++|||||| +.|+||.+|+.+|.+++++++.|+++|+||||| |+ +||+|+|++++.....   
T Consensus         4 ~~~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~   81 (725)
T 2wtb_A            4 RTKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNV   81 (725)
T ss_dssp             ---CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-----------
T ss_pred             CcCCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhh
Confidence            345568888 7789999999999 799999999999999999999999999999999 76 9999999998854221   


Q ss_pred             ---chhHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccc
Q psy9494          87 ---TKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHV  161 (314)
Q Consensus        87 ---~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~  161 (314)
                         ......+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                  
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lG------------------  143 (725)
T 2wtb_A           82 KEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLG------------------  143 (725)
T ss_dssp             -CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGT------------------
T ss_pred             hhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccC------------------
Confidence               1111222222333  89999999999999999999999999999999999999999999                  


Q ss_pred             ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494         162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  241 (314)
                                        +.|++|++++|++++|..+|++++++|+.++|+||+++||||++++++++.++|.+++++++
T Consensus       144 ------------------l~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (725)
T 2wtb_A          144 ------------------VIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIV  205 (725)
T ss_dssp             ------------------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHH
T ss_pred             ------------------CCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHH
Confidence                              77799999999999999999999999999999999999999999999999999999999997


Q ss_pred             hC--CH--HH---------------------------------HHHHHHHHhhhhchHHHHHH-HHHHHHhh-------h
Q psy9494         242 KL--SQ--SM---------------------------------LADRATVLSECETCREEWMS-ERKHYIGI-------S  276 (314)
Q Consensus       242 ~~--~~--~~---------------------------------~~~K~~~~~~~~~~~~~~~~-~~~~~~~~-------~  276 (314)
                      ..  |+  .+                                 ..+|+.++.......++.+. |.+.+...       .
T Consensus       206 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~g~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~  285 (725)
T 2wtb_A          206 GRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG  285 (725)
T ss_dssp             TTSSCCCCGGGCCTTSCCHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCCChhhhhhhccccCccchHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHH
Confidence            75  33  11                                 46788777665544444333 22221111       1


Q ss_pred             HHHHHHhcCCCCCCCC
Q psy9494         277 FELKFLQKKKKAKNGH  292 (314)
Q Consensus       277 ~~~af~ekr~p~~~~~  292 (314)
                      ...+|++||+|.+...
T Consensus       286 ~~~aF~~kr~~~~~~~  301 (725)
T 2wtb_A          286 LIHVFFSQRGTAKVPG  301 (725)
T ss_dssp             HHHHHHHHHGGGCCTT
T ss_pred             HHHHhhhhhhhcccCC
Confidence            1279999999987654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=2.8e-42  Score=359.19  Aligned_cols=192  Identities=21%  Similarity=0.280  Sum_probs=172.4

Q ss_pred             ccEEEE-EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCC-CccccCCcccccCCC--Cc-h
Q psy9494          15 SSVCTK-KILNITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEG-NFCSGFDLHELDENP--DT-K   88 (314)
Q Consensus        15 ~~v~~~-~~~~v~~itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~-~F~aG~Dl~~~~~~~--~~-~   88 (314)
                      +.+.++ .+++|++||||||+ +.|+||.+|+.+|.+++++++.|+++|+||||| |+ +||+|+|++++....  .. .
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~   84 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAE   84 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHH
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHH
Confidence            468888 77899999999998 899999999999999999999999999999999 76 999999999875421  11 1


Q ss_pred             h---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          89 L---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        89 ~---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                      .   ...+.+.+.+  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                    
T Consensus        85 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lG--------------------  144 (715)
T 1wdk_A           85 LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLG--------------------  144 (715)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGT--------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccC--------------------
Confidence            1   1122333333  99999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|++|++++|++++|..+|++++++|+.++|+||+++||||++++++++.++|.+++++++..
T Consensus       145 ----------------l~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~  208 (715)
T 1wdk_A          145 ----------------IYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISG  208 (715)
T ss_dssp             ----------------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTT
T ss_pred             ----------------CCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhc
Confidence                            7778999999999999999999999999999999999999999999999999999999999876

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=2.8e-41  Score=338.02  Aligned_cols=206  Identities=17%  Similarity=0.249  Sum_probs=182.9

Q ss_pred             hccccEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhhhC-CCccEEEEEc-CCCCccccCCcc
Q psy9494          12 RLVSSVCTKKILNITLISLNRPD----------KINAINLKTLDALQENIKRFEDD-TESPLAILYG-QEGNFCSGFDLH   79 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~----------~~Nal~~~~~~eL~~al~~~~~d-~~vr~vVltg-~g~~F~aG~Dl~   79 (314)
                      ..++.|.++++++|++|+||||+          +.|++|.+|+.+|.+++++++.| ++||+||||| .|++||+|+|++
T Consensus        18 ~~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~   97 (556)
T 2w3p_A           18 SQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIF   97 (556)
T ss_dssp             GGCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHH
T ss_pred             CcCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHH
Confidence            34567899999999999999998          89999999999999999999999 9999999999 899999999999


Q ss_pred             cccCCCCch---hH---HHHHHHHh---cCCCCcEEEEEcCccccccccccccCcEEEEeCC--eEeeccccc-cccccc
Q psy9494          80 ELDENPDTK---LF---DDFREFLQ---KPAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN--VLMGFYNRR-FVYLKD  147 (314)
Q Consensus        80 ~~~~~~~~~---~~---~~~~~~~~---~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~--a~f~~pe~~-~G~~~~  147 (314)
                      ++.......   ..   ..+...+.   .++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|    
T Consensus        98 el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LG----  173 (556)
T 2w3p_A           98 MLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLG----  173 (556)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHS----
T ss_pred             HHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccC----
Confidence            876432211   11   11222230   2799999999999999999999999999999999  999999999 99    


Q ss_pred             cccccchhhhhcccccccccccccccccccccCCCCchHHHHHH--HHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeC
Q psy9494         148 SLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLG--QMIGTSRTMDMISLGRHITAREALDWGLCNKMVN  225 (314)
Q Consensus       148 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~--~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~  225 (314)
                                                      +.|++|++++|+  +++|..+|++++++|+.++|+||+++||||+++|
T Consensus       174 --------------------------------L~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp  221 (556)
T 2w3p_A          174 --------------------------------VLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVK  221 (556)
T ss_dssp             --------------------------------SCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEEC
T ss_pred             --------------------------------CCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeC
Confidence                                            777899999999  9999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHhCCHH-HHHHHHHH
Q psy9494         226 CGTAVGEAMTRAIQMSKLSQS-MLADRATV  254 (314)
Q Consensus       226 ~~~l~~~a~~~a~~la~~~~~-~~~~K~~~  254 (314)
                      ++++.+++.++|++|+..||. +.. |+.+
T Consensus       222 ~~eL~~~A~~lA~~LA~~~p~Av~~-K~l~  250 (556)
T 2w3p_A          222 PNQFDQAIQARALELAAQSDRPAHA-QGVP  250 (556)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCTTC-CCCC
T ss_pred             hhHHHHHHHHHHHHHHcCChHHHhh-hhhh
Confidence            999999999999999999998 663 6543

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.87  E-value=2.5e-23  Score=212.52  Aligned_cols=197  Identities=19%  Similarity=0.161  Sum_probs=142.4

Q ss_pred             EeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh
Q psy9494          21 KILNITLISLNRPDKINA--INLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ   98 (314)
Q Consensus        21 ~~~~v~~itlnrp~~~Na--l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   98 (314)
                      .+++|++|++|+|.+.|+  ++..+.++|.++|+++++|+++|+|||++++    .|+|+...         ..+.+.+.
T Consensus       299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~---------~~i~~~i~  365 (593)
T 3bf0_A          299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTAS---------EVIRAELA  365 (593)
T ss_dssp             CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHH---------HHHHHHHH
T ss_pred             CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHH---------HHHHHHHH
Confidence            356799999999988888  6889999999999999999999999999874    46676532         12222222


Q ss_pred             c--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeecccccccccccc---ccccchhhhhccccccccccccccc
Q psy9494          99 K--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDS---LLSSGVVLYALHVPRTQLKHSLRDN  173 (314)
Q Consensus        99 ~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~  173 (314)
                      +  .++|||||+|+|.|+|||+.++++||+++|++++.||.+++... .|++   +.++|+..........+-. ++.  
T Consensus       366 ~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~-~~~~~~~~~klGi~~~~~~~g~~k~~-~~~--  441 (593)
T 3bf0_A          366 AARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGV-ITTVENSLDSIGVHTDGVSTSPLADV-SIT--  441 (593)
T ss_dssp             HHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEE-EEECHHHHHHTTCEEECCBSCGGGCC-CTT--
T ss_pred             HHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEe-cCchHHHHHhcCceeeeeeccccccc-CcC--
Confidence            2  68999999999999999999999999999999999998876321 1211   2233332222211111100 000  


Q ss_pred             ccccccCCC---------CchHHHHHHHHhhHHH-----HHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHH
Q psy9494         174 LSRDLAIPT---------CDVTIRRLGQMIGTSR-----TMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI  238 (314)
Q Consensus       174 ~~~~~~~~p---------~~g~~~~l~~~vG~~~-----a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~  238 (314)
                          ....+         -.....+|.+.++..+     +.+++++|+.|+|+||+++||||++++.+++.+++.+++.
T Consensus       442 ----~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          442 ----RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             ----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence                00000         0012367888999988     9999999999999999999999999988877777776544

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.82  E-value=2.2e-20  Score=170.74  Aligned_cols=195  Identities=15%  Similarity=0.118  Sum_probs=129.0

Q ss_pred             eCCEEEEEEcCCCCCCC-----CC--HHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHH
Q psy9494          22 ILNITLISLNRPDKINA-----IN--LKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFR   94 (314)
Q Consensus        22 ~~~v~~itlnrp~~~Na-----l~--~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   94 (314)
                      +++|++|.++.+=..+.     ++  .-.+++|.++|+++.+|+++|+|||++.    |.|+|+...         ..+.
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~---------~~i~   68 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYES---------AEIH   68 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHH---------HHHH
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHH---------HHHH
Confidence            46789999987632221     10  0136899999999999999999999986    578777542         2233


Q ss_pred             HHHhc--C-CCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhccccccccccc
Q psy9494          95 EFLQK--P-AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHS  169 (314)
Q Consensus        95 ~~~~~--~-~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~  169 (314)
                      +.+.+  . ++|||||+|+|.|+|||++|+++||+++|++++.|+.+.+...  .+...|.++||-...++....+-..+
T Consensus        69 ~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~  148 (240)
T 3rst_A           69 KKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMS  148 (240)
T ss_dssp             HHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTC
T ss_pred             HHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccC
Confidence            33332  3 7999999999999999999999999999999999998855422  12233445555554444433222211


Q ss_pred             ccccccccccCCCCchHH-----------------HHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHH
Q psy9494         170 LRDNLSRDLAIPTCDVTI-----------------RRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGE  232 (314)
Q Consensus       170 ~~~~~~~~~~~~p~~g~~-----------------~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~  232 (314)
                      +.        -+......                 ..-.|.+...... .+++|+.|+|++|++.||||++++.+++.+.
T Consensus       149 p~--------~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~-~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~  219 (240)
T 3rst_A          149 PS--------REMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVK-KIADGRVYDGRQAKKLNLVDELGFYDDTITA  219 (240)
T ss_dssp             TT--------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH-HHCSSCEEEHHHHHHTTSSSEECCHHHHHHH
T ss_pred             CC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCCHHHHHHH
Confidence            11        01011111                 1112223333333 4789999999999999999999987777776


Q ss_pred             HHHHHH
Q psy9494         233 AMTRAI  238 (314)
Q Consensus       233 a~~~a~  238 (314)
                      +.+++.
T Consensus       220 ~~~~~~  225 (240)
T 3rst_A          220 MKKDHK  225 (240)
T ss_dssp             HHHHCG
T ss_pred             HHHHhC
Confidence            666543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.79  E-value=8.6e-19  Score=159.58  Aligned_cols=169  Identities=18%  Similarity=0.201  Sum_probs=123.4

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCC
Q psy9494          22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPA  101 (314)
Q Consensus        22 ~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~  101 (314)
                      .+.|++|+++     ++++..+.+.|.++|+++++| ++++|+|+.+    |.|+|+...         ..+.+.+. .+
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~---------~~i~~~i~-~~   66 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM---------MNIVQRIQ-QS   66 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH---------HHHHHHHH-TC
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH---------HHHHHHHH-hC
Confidence            4579999997     489999999999999999875 6999999975    667666432         22333344 79


Q ss_pred             CCcEEEEE---cCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccc
Q psy9494         102 KKPIIAAI---TGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDL  178 (314)
Q Consensus       102 ~kPvIAav---~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  178 (314)
                      +||||++|   +|.|+|+|+.++++||+++|+++++|+.++...++ |    .-|-.      +      ....++..+ 
T Consensus        67 ~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~----~~G~~------~------~~~~k~~~~-  128 (230)
T 3viv_A           67 KIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-S----QNGSI------I------EAPPAITNY-  128 (230)
T ss_dssp             SSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-C----TTSCE------E------ECCHHHHHH-
T ss_pred             CCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-C----CCCCc------h------HHHHHHHHH-
Confidence            99999999   99999999999999999999999999988876430 0    00100      0      000000000 


Q ss_pred             cCCCCchHHHHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHH
Q psy9494         179 AIPTCDVTIRRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGE  232 (314)
Q Consensus       179 ~~~p~~g~~~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~  232 (314)
                          .......+++..|+  ..+.+++.+++.+||+||+++||||+++++ +++++.
T Consensus       129 ----~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~  181 (230)
T 3viv_A          129 ----FIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKK  181 (230)
T ss_dssp             ----HHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHH
T ss_pred             ----HHHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHH
Confidence                00112357778885  789999999999999999999999999976 444433

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.58  E-value=7.4e-16  Score=139.03  Aligned_cols=150  Identities=14%  Similarity=0.187  Sum_probs=107.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+++.+.|..++.|++++.|+|.  +.|+.+.+|.++               .+.++ .+++||++.++|.|++
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I---------------~~~i~-~~~~pV~t~v~G~AaS  116 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAI---------------VDTMN-FIKADVQTIVMGMAAS  116 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHH---------------HHHHH-HSSSCEEEEEEEEEET
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHH---------------HHHHH-hcCCCEEEEEccEeHH
Confidence            47899999999999999988878888777  445555554333               22333 5789999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCC------CchHH
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPT------CDVTI  187 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~g~~  187 (314)
                      +|+.++++||.  |+|.+++.|+..+..-|. |    .-|-                    ..|+.+..      .....
T Consensus       117 ~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~-~----~~G~--------------------~~di~~~~~~i~~~~~~~~  171 (218)
T 1y7o_A          117 MGTVIASSGAKGKRFMLPNAEYMIHQPMGGT-G----GGTQ--------------------QTDMAIAPEHLLKTRNTLE  171 (218)
T ss_dssp             HHHHHHTTSCTTCEEECTTCEEECCCCC---------------------------------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcCcEEEcCCcEEEEecccccc-c----CcCC--------------------HHHHHHHHHHHHHHHHHHH
Confidence            99999999999  999999999988775330 0    0000                    00000000      00113


Q ss_pred             HHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCCCc
Q psy9494         188 RRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNCGT  228 (314)
Q Consensus       188 ~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~  228 (314)
                      ..+.+..|.  .++.+++..|+.|+|+||+++||||++++.++
T Consensus       172 ~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          172 KILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             HHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence            456667775  47888999999999999999999999998765

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.57  E-value=4.7e-15  Score=140.05  Aligned_cols=159  Identities=14%  Similarity=0.130  Sum_probs=124.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK  102 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~  102 (314)
                      |+.+..+..-..|+++..+...+.++++.+.++ ++++|+|++.|     |+|+.+....  ......+...+..  ..+
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--l~~~~~i~~al~~~~~~~  191 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--LMQMAKTSAALAKMQERG  191 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--HHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--HHHHHHHHHHHHHHhcCC
Confidence            566666665578999999999999999999998 89999999876     7888654210  0001111111111  469


Q ss_pred             CcEEEEEcCcccccc-ccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494         103 KPIIAAITGYAVGQG-LDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP  181 (314)
Q Consensus       103 kPvIAav~G~a~GgG-~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                      +|+|++|+|+|+||| +.++++||++||.++|+|++.                                           
T Consensus       192 vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-------------------------------------------  228 (304)
T 2f9y_B          192 LPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-------------------------------------------  228 (304)
T ss_dssp             CCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-------------------------------------------
T ss_pred             CCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-------------------------------------------
Confidence            999999999999999 888999999999999988733                                           


Q ss_pred             CCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         182 TCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       182 p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                          +...+.+.+|..      ++++..+|++++++|+||.|++++++.+.+.+++..+...|
T Consensus       229 ----Gp~~i~~~ig~~------l~~~~~~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          229 ----GPRVIEQTVREK------LPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             ----CHHHHHHHHTSC------CCTTTTBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred             ----cHHHHHHHhCcc------CCcccCCHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence                234556667743      56889999999999999999999899999999999997653

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.44  E-value=5.9e-13  Score=126.83  Aligned_cols=138  Identities=14%  Similarity=0.111  Sum_probs=98.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCc
Q psy9494          35 KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGY  112 (314)
Q Consensus        35 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~  112 (314)
                      ..++++++......+.++.+++. .+-+|.|.-.++++. |.+..+..      ........+..  .+++|+|++|+|.
T Consensus       137 ~~G~~~~~~~~Ka~r~~~~A~~~-~~PlI~lvdt~Ga~~-g~~ae~~g------~~~~~a~~l~al~~~~vPvIavV~G~  208 (327)
T 2f9i_A          137 NFGMAHPEGYRKALRLMKQAEKF-NRPIFTFIDTKGAYP-GKAAEERG------QSESIATNLIEMASLKVPVIAIVIGE  208 (327)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-CHHHHHTT------HHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCc-chhhhhhh------hHHHHHHHHHHHHhCCCCEEEEEECC
Confidence            34789999999999999999876 466777765443332 21111110      11122222222  8999999999999


Q ss_pred             cccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494         113 AVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ  192 (314)
Q Consensus       113 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~  192 (314)
                      |.|||+.++++||+++|.+++.|++                                          ++|.++++.++.+
T Consensus       209 a~GGGa~~~~~~D~via~~~A~~~v------------------------------------------~~peg~a~il~~~  246 (327)
T 2f9i_A          209 GGSGGALGIGIANKVLMLENSTYSV------------------------------------------ISPEGAAALLWKD  246 (327)
T ss_dssp             EBHHHHHTTCCCSEEEEETTCBCBS------------------------------------------SCHHHHHHHHSSC
T ss_pred             cChHHHHHHHCCCEEEEcCCceEee------------------------------------------cCchHHHHHHHHH
Confidence            9999999999999999999998872                                          3334444444444


Q ss_pred             HhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       193 ~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      ..+...+.++    +.++|++|+++|+||+|++.
T Consensus       247 ~~~a~~A~e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          247 SNLAKIAAET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             GGGHHHHHHH----HTCBHHHHHHTTSSSEEECC
T ss_pred             hcchHHHHHH----cCCCHHHHHHcCCceEEecC
Confidence            4455677766    77999999999999999983

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.41  E-value=6.5e-13  Score=127.09  Aligned_cols=138  Identities=9%  Similarity=0.022  Sum_probs=101.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCc
Q psy9494          35 KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGY  112 (314)
Q Consensus        35 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~  112 (314)
                      ..++++++......+.++.+++. .+-+|.|.-.++++. |....+..      ........+..  .+++|+|++|+|.
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~-~lPlI~lvDt~Ga~~-g~~aE~~g------~~~~~a~~l~al~~~~vPvIavV~G~  222 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYP-GVGAEERG------QSEAIARNLREMSRLGVPVVCTVIGE  222 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-SHHHHHTT------HHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCcc-chHHHHHH------HHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            34789999999999999988876 467777765544433 21111110      11122222222  8999999999999


Q ss_pred             cccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494         113 AVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ  192 (314)
Q Consensus       113 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~  192 (314)
                      |.|||+.++++||+++|.++++|++                                          +.|.++++.++.+
T Consensus       223 a~GGGa~~~~~~D~via~p~A~~~v------------------------------------------~~Peg~asil~~~  260 (339)
T 2f9y_A          223 GGSGGALAIGVGDKVNMLQYSTYSV------------------------------------------ISPEGCASILWKS  260 (339)
T ss_dssp             EEHHHHHTTCCCSEEEECTTCEEES------------------------------------------SCHHHHHHHHSSC
T ss_pred             cCcHHHHHHhccCeeeecCCCEEEe------------------------------------------eccchHHHHHHHh
Confidence            9999999999999999999999873                                          3345556666666


Q ss_pred             HhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         193 MIGTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       193 ~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      ..+...|.++    +.++|++|+++|+||+|++.
T Consensus       261 ~~~~~~Aae~----~~itA~~a~~~GlVd~VV~e  290 (339)
T 2f9y_A          261 ADKAPLAAEA----MGIIRPRLKELKLIDSIIPE  290 (339)
T ss_dssp             STTHHHHHHH----HTCSHHHHHTTTSCSCCCCC
T ss_pred             hccHHHHHHH----cCCCHHHHHHcCCeeEEecC
Confidence            6677777777    67999999999999999983

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.11  E-value=9e-11  Score=104.84  Aligned_cols=154  Identities=19%  Similarity=0.176  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+.+.+.|..++.|++++.|+|.  +.|+.-.+|               ..+.+.+. ..++||++.+.|.|++
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~---------------~~I~~~i~-~~~~pV~~~v~g~AaS   98 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAG---------------MAIYDTMV-LAPCDIATYAMGMAAS   98 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH---------------HHHHHHHH-HCSSCEEEEEEEEEET
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHH---------------HHHHHHHH-hcCCCEEEEECcEeHH
Confidence            46789999999999999987777777776  444332221               23333444 6789999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCC------CchHH
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPT------CDVTI  187 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~g~~  187 (314)
                      +|+.++++||.  |++.+++.++.....-|       .-|-                    ..|+....      .....
T Consensus        99 ~g~~Ia~agd~~~~~a~p~a~igih~p~~~-------~~G~--------------------~~d~~~~~~~l~~~~~~~~  151 (208)
T 2cby_A           99 MGEFLLAAGTKGKRYALPHARILMHQPLGG-------VTGS--------------------AADIAIQAEQFAVIKKEMF  151 (208)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEECCCC-------------------------------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcCCEEEcCCcEEEEeccccc-------ccCC--------------------HHHHHHHHHHHHHHHHHHH
Confidence            99999999998  99999999876554322       0010                    00000000      00001


Q ss_pred             HHHHHHhhH--HHHHHHHhcCCCCCHHHHHHCCCceeeeCC-CchHHHHH
Q psy9494         188 RRLGQMIGT--SRTMDMISLGRHITAREALDWGLCNKMVNC-GTAVGEAM  234 (314)
Q Consensus       188 ~~l~~~vG~--~~a~~lll~G~~~sA~eA~~~GLV~~vv~~-~~l~~~a~  234 (314)
                      ..+.+..|.  ....+++..|+.|||+||+++||||++.+. +++++...
T Consensus       152 ~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~  201 (208)
T 2cby_A          152 RLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQL  201 (208)
T ss_dssp             HHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC--------
T ss_pred             HHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHH
Confidence            123333332  335667889999999999999999999975 45554433

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.68  E-value=3.1e-08  Score=87.26  Aligned_cols=86  Identities=16%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+.+.+.|..++.|++++.|+|.  +.|+.-.+|               ..+.+.+. ..++||++.+.|.|++
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~---------------~~I~~~i~-~~~~pV~~~v~g~AaS   97 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAG---------------MSIYDTMQ-FIKPDVSTICMGQAAS   97 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH---------------HHHHHHHH-HSSSCEEEEEEEEEET
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHH---------------HHHHHHHH-hcCCCEEEEEeeeHHH
Confidence            47888999999999999887777877776  444433222               22333444 5679999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccc
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYN  139 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe  139 (314)
                      +|+.++++||.  |++.+++.++...
T Consensus        98 ~g~~Ia~ag~~~~r~a~p~s~i~ih~  123 (193)
T 1yg6_A           98 MGAFLLTAGAKGKRFCLPNSRVMIHQ  123 (193)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEEECC
T ss_pred             HHHHHHHCCCcCcEEEecCcEEEEEe
Confidence            99999999999  9999999877544

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.60  E-value=1.3e-07  Score=84.79  Aligned_cols=146  Identities=16%  Similarity=0.126  Sum_probs=91.3

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+.+.+.|..++.++. +.|+|.  +.|+...+|               ..+.+.+. ..++||++.+.|.|++
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~---------------~~I~~~i~-~~~~pV~t~v~g~AAS  109 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEG---------------LAILDIFN-YIKSDIQTISFGLVAS  109 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHH---------------HHHHHHHH-HSSSCEEEEEEEEECH
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHH---------------HHHHHHHH-hcCCCEEEEEeeEhHh
Confidence            4678889999999999876655 766665  445433222               22333344 5678999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCc------hHH
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCD------VTI  187 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------g~~  187 (314)
                      +|+.++++||.  |+|.+++.++......|       ..|-                    ..|+......      ...
T Consensus       110 ~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~-------~~G~--------------------~~di~~~~~el~~~~~~i~  162 (215)
T 2f6i_A          110 MASVILASGKKGKRKSLPNCRIMIHQPLGN-------AFGH--------------------PQDIEIQTKEILYLKKLLY  162 (215)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEESSCTTCS-------CC----------------------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccEEEcCCCEEEEeccccc-------cCCc--------------------hHHHHHHHHHHHHHHHHHH
Confidence            99999999999  99999999875443222       0010                    0011110000      000


Q ss_pred             HHHHHHhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         188 RRLGQMIG--TSRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       188 ~~l~~~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                      ..+.+..|  .....+++-.+..+||+||+++||||++.+..
T Consensus       163 ~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          163 HYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             HHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCS
T ss_pred             HHHHHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCCc
Confidence            11112222  23444555445567999999999999998753

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.54  E-value=8.6e-08  Score=85.38  Aligned_cols=147  Identities=17%  Similarity=0.180  Sum_probs=96.3

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+.+.+.|..++.++..+.|+|.  +.|+...+|               ..+.+.++ ..++||++.+.|.|++
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~---------------~~I~~~i~-~~~~~V~t~~~G~AaS   98 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAG---------------FAIYDTIQ-HIKPDVQTICIGMAAS   98 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH---------------HHHHHHHH-HSSSCEEEEEEEEEET
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH---------------HHHHHHHH-HhcCCcEEEEeeeehh
Confidence            57899999999999999987777766665  445433332               22333333 5789999999999999


Q ss_pred             ccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccccccc------CCCCchHH
Q psy9494         116 QGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLA------IPTCDVTI  187 (314)
Q Consensus       116 gG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~g~~  187 (314)
                      +|..++++||  .|++.+++.+......-|       .-|                   + ..|+.      ........
T Consensus        99 ag~~i~~ag~~g~r~~~p~a~imiHqP~~~-------~~G-------------------~-a~di~~~a~~l~~~~~~~~  151 (203)
T 3qwd_A           99 MGSFLLAAGAKGKRFALPNAEVMIHQPLGG-------AQG-------------------Q-ATEIEIAANHILKTREKLN  151 (203)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEECCCCSSS-------TTT-------------------T-SCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHcCCcCeEEEcCCceEEEeccccc-------ccC-------------------C-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999  599999998875433222       000                   0 00000      00000011


Q ss_pred             HHHHHHhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         188 RRLGQMIG--TSRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       188 ~~l~~~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                      ..+.+.-|  .....+++-....++|+||+++||||+|....
T Consensus       152 ~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          152 RILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             HHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCC
T ss_pred             HHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCCc
Confidence            12233333  23455666666789999999999999999864

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.50  E-value=3.5e-07  Score=85.09  Aligned_cols=86  Identities=15%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .++..+.+.+.+.|..++.++..+.|+|.  +.|+...+|.               .+.+.++ ..++||++.+.|.|++
T Consensus        90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~---------------aIyd~I~-~~k~pV~t~v~G~AAS  153 (277)
T 1tg6_A           90 PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGL---------------AIYDTMQ-YILNPICTWCVGQAAS  153 (277)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHH---------------HHHHHHH-HSCSCEEEEEEEEEET
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHH---------------HHHHHHH-hcCCCEEEEEccEeHH
Confidence            47888999999999998765556777776  4454443332               2333333 5678999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeeccc
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYN  139 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe  139 (314)
                      +|+.++++||.  |+|.+++.++...
T Consensus       154 aG~~Ia~Agd~gkr~a~P~S~Imihq  179 (277)
T 1tg6_A          154 MGSLLLAAGTPGMRHSLPNSRIMIHQ  179 (277)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEEECC
T ss_pred             HHHHHHHCCCcCCEEEecCCEEEEec
Confidence            99999999999  9999999877543

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.43  E-value=1e-07  Score=84.80  Aligned_cols=87  Identities=14%  Similarity=0.110  Sum_probs=66.5

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCccEEEEE--cCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESPLAILY--GQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .+++.+.+.+.+.|..++.++..+.|+|.  +.|+...+|               ..+.+.++ ..++||++.+.|.|++
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~---------------~~I~~~i~-~~~~~v~t~~~G~AaS  101 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAG---------------MGVYDTMQ-FIKPDVSTICIGLAAS  101 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHH---------------HHHHHHHH-HSSSCEEEEEEEEEET
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHH---------------HHHHHHHH-HhCCCeEEEEcCEehh
Confidence            57889999999999999877667767665  444433322               22333333 5778999999999999


Q ss_pred             ccccccccCcE--EEEeCCeEeecccc
Q psy9494         116 QGLDLALWCDL--RFVEENVLMGFYNR  140 (314)
Q Consensus       116 gG~~lalacD~--~ia~~~a~f~~pe~  140 (314)
                      +|..++++||-  |++.+++.+.....
T Consensus       102 ~g~~i~~ag~~g~r~~~p~a~imiH~p  128 (201)
T 3p2l_A          102 MGSLLLAGGAKGKRYSLPSSQIMIHQP  128 (201)
T ss_dssp             HHHHHHHTSSTTCEEECTTCEEEECCC
T ss_pred             HHHHHHHcCccCCEEEcCCCeEEEecc
Confidence            99999999998  99999998865444

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.22  E-value=1.4e-06  Score=88.78  Aligned_cols=174  Identities=14%  Similarity=0.076  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhhhCCCccEEEEEcCCCCcccc-CCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCcccccccc
Q psy9494          43 TLDALQENIKRFEDDTESPLAILYGQEGNFCSG-FDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAVGQGLD  119 (314)
Q Consensus        43 ~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~  119 (314)
                      ...++.+.|+.+++|+.++.|+|.-+.    -| +++..         ...+.+.+..  ...|||||.+++ +..+|+.
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~ins----pGgG~v~~---------~~~I~~~i~~~k~~gkpvva~~~~-aas~~y~  136 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLKN----FAGGDQPS---------MQYIGKALKEFRDSGKPVYAVGEN-YSQGQYY  136 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECTE----EEECCHHH---------HHHHHHHHHHHHHTTCCEEEEESC-EEHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeCC----CCCCcHHH---------HHHHHHHHHHHHhcCCeEEEEEcc-chhHHHH
Confidence            467889999999999999999998541    12 22221         1223333322  347999999876 6788899


Q ss_pred             ccccCcEEEEeCCeEeeccccccc--cccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhh--
Q psy9494         120 LALWCDLRFVEENVLMGFYNRRFV--YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG--  195 (314)
Q Consensus       120 lalacD~~ia~~~a~f~~pe~~~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG--  195 (314)
                      ||++||-+++.+++.++......+  .+...+.++||-.-.++....+-..+  -++..|.  .  ......+.+++.  
T Consensus       137 lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~e--p~~r~~m--s--~~~re~~~~~l~~~  210 (593)
T 3bf0_A          137 LASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVE--PFIRDDM--S--PAAREADSRWIGEL  210 (593)
T ss_dssp             HHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGH--HHHCSSC--C--HHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCC--cccCCCC--C--HHHHHHHHHHHHHH
Confidence            999999999999998875544322  12334445555333333322111100  0000000  0  001111111111  


Q ss_pred             ---------------HHHHHHHHhc-------CCCCCHHHHHHCCCceeeeCCCchHHHHHHH
Q psy9494         196 ---------------TSRTMDMISL-------GRHITAREALDWGLCNKMVNCGTAVGEAMTR  236 (314)
Q Consensus       196 ---------------~~~a~~lll~-------G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~  236 (314)
                                     .....+++-.       +..++|++|++.||||++...+++.....+.
T Consensus       211 ~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~~~  273 (593)
T 3bf0_A          211 WQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKE  273 (593)
T ss_dssp             HHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence                           1222223332       7899999999999999999766655555443

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.01  E-value=1e-05  Score=82.44  Aligned_cols=166  Identities=10%  Similarity=0.056  Sum_probs=106.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccC-CCC-chhHHHHHHHHhc-CC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE-NPD-TKLFDDFREFLQK-PA  101 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~-~~~-~~~~~~~~~~~~~-~~  101 (314)
                      |..+..+.--..-++.+...+.+..+++.+.+. .+-+|.|.-.|     |+.+.+-.. ..+ .....-+...... ..
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dSg-----GArlqe~~~~l~~~~~~g~i~~~~~~ls~~  180 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNCS-----GVKFDEQEKVYPNRRGGGTPFFRNAELNQL  180 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECCC-----EECGGGHHHHSSSTTSTTHHHHHHHHHHHT
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC-----CCCccccchhccccccHHHHHHHHHHHhCC
Confidence            444555554456788899999999999999886 57788887644     444433111 000 0011112222111 67


Q ss_pred             CCcEEEEEcCccccccccccccCcEEEEeCC-eEeeccccccccccccccccchhhhhcccccccccccccccccccccC
Q psy9494         102 KKPIIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAI  180 (314)
Q Consensus       102 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (314)
                      ..|+|+.|.|+|.|||... ..||++|+.+. +.+++.-      |++...                            +
T Consensus       181 giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~G------P~vi~~----------------------------~  225 (587)
T 1pix_A          181 GIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGG------AGIMGG----------------------------M  225 (587)
T ss_dssp             TCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCC------CTTCCS----------------------------C
T ss_pred             CCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecC------HHHHhh----------------------------h
Confidence            8999999999999999999 88999988764 8776422      222111                            0


Q ss_pred             CCCchHHHHHHHHhhHHHHHHHH-hcCCCCCHHH-------HHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         181 PTCDVTIRRLGQMIGTSRTMDMI-SLGRHITARE-------ALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       181 ~p~~g~~~~l~~~vG~~~a~~ll-l~G~~~sA~e-------A~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                      -+        .-.+|..+|.+++ .+|+.+++++       +.+.|++|.++++++   ++.+.++++..
T Consensus       226 ~~--------~~~~d~~~A~el~~~tge~v~~e~lgga~~h~~~~GvvD~vv~~e~---~a~~~~r~~ls  284 (587)
T 1pix_A          226 NP--------KGHVDLEYANEIADMVDRTGKTEPPGAVDIHYTETGFMREVYASEE---GVLEGIKKYVG  284 (587)
T ss_dssp             CS--------SSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEESSHH---HHHHHHHHHHH
T ss_pred             cc--------ccccchhHHHHHHHHhCCccChhhcccHHHHHhhcCceeEecCCHH---HHHHHHHHHHH
Confidence            00        1126778999999 9999887665       236999999999865   44444444433

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.79  E-value=2.3e-05  Score=69.85  Aligned_cols=149  Identities=13%  Similarity=0.126  Sum_probs=89.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEE--EcCC----------CCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAIL--YGQE----------GNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVl--tg~g----------~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      ..+|.++.+.+...|..++.++..+-|.|  -+.|          +...+|               -.+.+.++ ..+.|
T Consensus        35 ~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~ag---------------laIyd~m~-~~~~~   98 (205)
T 4gm2_A           35 SPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDV---------------ISIVDVIN-YISSD   98 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHH---------------HHHHHHHH-HSSSC
T ss_pred             CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHH---------------HHHHHHHH-hcCCC
Confidence            35789999999999999986443343333  3444          222221               12333333 67789


Q ss_pred             EEEEEcCccccccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC-
Q psy9494         105 IIAAITGYAVGQGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP-  181 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  181 (314)
                      |...+-|.|++.|..|++++|  .|++.+++++-+-....|.      +-|                   + ..|+.+- 
T Consensus        99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~------~~G-------------------~-a~di~i~a  152 (205)
T 4gm2_A           99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSII------PFN-------------------Q-ATNIEIQN  152 (205)
T ss_dssp             EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCC------CSS-------------------C-CSCHHHHH
T ss_pred             EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccc------ccc-------------------C-HHHHHHHH
Confidence            999999999999999999999  5999999987644433220      000                   0 0010000 


Q ss_pred             -----CCchHHHHHHHHhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCCC
Q psy9494         182 -----TCDVTIRRLGQMIG--TSRTMDMISLGRHITAREALDWGLCNKMVNCG  227 (314)
Q Consensus       182 -----p~~g~~~~l~~~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~  227 (314)
                           ........+.+.-|  .....+++-....++|+||+++||||+|+..+
T Consensus       153 ~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          153 KEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence                 00001112222223  23344556666779999999999999998753

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.64  E-value=0.00069  Score=68.16  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=99.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+---+.-++.....+.+..+++.+.+. .+-+|.|.-.|++     .+.+-... -.....-+.......-..|
T Consensus        99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSgGa-----RmqEg~~~-l~~~~~i~~~~~~~s~~iP  171 (530)
T 3iav_A           99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSGGA-----RIQEGVAS-LGAYGEIFRRNTHASGVIP  171 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCSB-----CGGGTHHH-HHHHHHHHHHHHHTTTTSC
T ss_pred             EEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----chhhhhhh-HHHHHHHHHHHHHHcCCCC
Confidence            344444444466789999999999999999876 5788888875543     33321000 0000111111112233599


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCC-eEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCC
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTC  183 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  183 (314)
                      +|+.|.|+|.|||......||++|++++ +.+++.    |                                        
T Consensus       172 ~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a----G----------------------------------------  207 (530)
T 3iav_A          172 QISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT----G----------------------------------------  207 (530)
T ss_dssp             EEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS----C----------------------------------------
T ss_pred             EEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec----C----------------------------------------
Confidence            9999999999999998889999999886 766521    1                                        


Q ss_pred             chHHHHHHHHhhHHHHHHHHhcCCCCCHHHH-------HHCCCceeeeCCC-chHHHHHHHHHHH
Q psy9494         184 DVTIRRLGQMIGTSRTMDMISLGRHITAREA-------LDWGLCNKMVNCG-TAVGEAMTRAIQM  240 (314)
Q Consensus       184 ~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA-------~~~GLV~~vv~~~-~l~~~a~~~a~~l  240 (314)
                             |++|-       ..+|+.+++++.       ...|++|.++++| ++.+.++++...|
T Consensus       208 -------P~vi~-------~~~ge~v~~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~l  258 (530)
T 3iav_A          208 -------PDVIK-------TVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL  258 (530)
T ss_dssp             -------HHHHH-------HHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             -------HHHHH-------HHhCCcCChhhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhc
Confidence                   22111       157888888765       6899999999885 4667777766665

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.62  E-value=0.00064  Score=68.38  Aligned_cols=151  Identities=11%  Similarity=0.096  Sum_probs=98.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+.--..-++.....+.+..+++.+.+. .+-+|.|.-.|     |+.+.+-.. +-....+-+.......-..|
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSG-----GARmqeg~~-sl~~~~~i~~~~~~~s~~iP  179 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQN-GAPVIGINDSG-----GARIQEGVD-SLAGYGEVFQRNIMASGVVP  179 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----CBCGGGTHH-HHHHHHHHHHHHHHTTTTSC
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHc-CCCEEEEeCCC-----ccccCcccc-hhhhHHHHHHHHHHHhCCCC
Confidence            444444444456789999999999999998876 57788888654     334433100 00001111222222245699


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCC-eEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCC
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTC  183 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  183 (314)
                      +|+.|.|+|.|||......||++|+.++ +.++                                           +.  
T Consensus       180 ~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~-------------------------------------------~a--  214 (531)
T 3n6r_B          180 QISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMF-------------------------------------------VT--  214 (531)
T ss_dssp             EEEEECSCCBGGGGHHHHHSSEEEEETTTCBCB-------------------------------------------SS--
T ss_pred             EEEEEeCCcchHHHHHhhhCCEEEEecCCceEe-------------------------------------------ec--
Confidence            9999999999999988888999999986 6643                                           11  


Q ss_pred             chHHHHHHHHhhHHHHHHHHhcCCCCCHHHH-------HHCCCceeeeCCCc-hHHHHHHHHHHH
Q psy9494         184 DVTIRRLGQMIGTSRTMDMISLGRHITAREA-------LDWGLCNKMVNCGT-AVGEAMTRAIQM  240 (314)
Q Consensus       184 ~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA-------~~~GLV~~vv~~~~-l~~~a~~~a~~l  240 (314)
                       |     |++|-       -.+|+.+++++.       ...|++|.++++|+ +.+.++++...|
T Consensus       215 -G-----P~vI~-------~~~ge~v~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~~r~lls~L  266 (531)
T 3n6r_B          215 -G-----PDVVK-------TVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFL  266 (531)
T ss_dssp             -C-----HHHHH-------HHHCCCCCHHHHHBHHHHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             -C-----HHHHH-------HHhCCccChhhcchHHHHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence             1     22221       257899999998       89999999998843 455555444433

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.47  E-value=0.00097  Score=62.06  Aligned_cols=105  Identities=14%  Similarity=0.159  Sum_probs=69.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAK  102 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~  102 (314)
                      |+.+..|.--..-+++....+.+.++++.+.+. .+-+|.|...|++     -+.+-.  ..-.........+..  ...
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsgGa-----r~qEGi--~sl~q~aki~~~l~~~s~~~  194 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASGGA-----RMQEGI--ISLMQMGKTSVSLKRHSDAG  194 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEECSC-----CGGGHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCc-----chhhhh--hhHhHHHHHHHHHHHHHcCC
Confidence            555544433345789999999999999998876 5788888865543     222100  000000111111222  578


Q ss_pred             CcEEEEEcCcccccccc-ccccCcEEEEeCCeEeec
Q psy9494         103 KPIIAAITGYAVGQGLD-LALWCDLRFVEENVLMGF  137 (314)
Q Consensus       103 kPvIAav~G~a~GgG~~-lalacD~~ia~~~a~f~~  137 (314)
                      .|.|+.|.|+|.||+.. .++.+|+++|.++|.+++
T Consensus       195 vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~  230 (285)
T 2f9i_B          195 LLYISYLTHPTTGGVSASFASVGDINLSEPKALIGF  230 (285)
T ss_dssp             CCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEES
T ss_pred             CCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEE
Confidence            99999999999999855 488999999999987763

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.39  E-value=0.00073  Score=67.91  Aligned_cols=105  Identities=14%  Similarity=0.087  Sum_probs=72.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+--=..-++....-+.+..+++.+.+. .+.+|.+..     |.|+.+.+-... -.....-+....+..-..|
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s-l~~~~~i~~~~~~~s~~iP  169 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-LSGYGKMFFANVKLSGVVP  169 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-HHHHHHHHHHHHHHTTTSC
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH-HHHHHHHHHHHHHhcCCCC
Confidence            444444444466789999999999999999876 577888886     445555432110 0001111111222255699


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCCeEee
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEENVLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~a~f~  136 (314)
                      .|+.+.|+|.||+......||++|+.+++.++
T Consensus       170 ~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~  201 (523)
T 1on3_A          170 QIAIIAGPCAGGASYSPALTDFIIMTKKAHMF  201 (523)
T ss_dssp             EEEEEEEEEESGGGHHHHHSSEEEEETTCEEE
T ss_pred             EEEEEcCCCchHHHHHHhhCCeEEEeCCCEEE
Confidence            99999999999999999999999999998765

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.36  E-value=0.0031  Score=63.77  Aligned_cols=153  Identities=12%  Similarity=0.071  Sum_probs=97.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccc-cCCcccccCCCCchhHHHHHHHHhc-CCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCS-GFDLHELDENPDTKLFDDFREFLQK-PAK  102 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~a-G~Dl~~~~~~~~~~~~~~~~~~~~~-~~~  102 (314)
                      |..+..+.--+.-++.+.....+..+++.+.+. .+-+|.|.-.|++... +.+.  +....  ....-+...... ...
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgGARl~~q~~~--~~~~~--~~~~i~~~~~~ls~~g  197 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGGANLPRQDEV--FPDRE--HFGRIFFNQANMSARG  197 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCCBCGGGGGGT--SSSTT--STTHHHHHHHHHHHTT
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCCCccee--ecccc--cHHHHHHHHHHHhcCC
Confidence            444444544466788999999999999999886 5778888876655431 1111  11000  011111111111 467


Q ss_pred             CcEEEEEcCccccccccccccCcEEEEeC-CeEeeccccccccccccccccchhhhhcccccccccccccccccccccCC
Q psy9494         103 KPIIAAITGYAVGQGLDLALWCDLRFVEE-NVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIP  181 (314)
Q Consensus       103 kPvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (314)
                      .|+|+.|.|+|.|||......||++|+.+ ++.++                                           +.
T Consensus       198 iP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~-------------------------------------------~a  234 (555)
T 3u9r_B          198 IPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIF-------------------------------------------LA  234 (555)
T ss_dssp             CCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCB-------------------------------------------SS
T ss_pred             CCEEEEEecCCCccHHHHHHhCCceEEecCCceEE-------------------------------------------Ec
Confidence            99999999999999999999999988776 45432                                           11


Q ss_pred             CCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHH-------HHCCCceeeeCCCc-hHHHHHHHHHHH
Q psy9494         182 TCDVTIRRLGQMIGTSRTMDMISLGRHITAREA-------LDWGLCNKMVNCGT-AVGEAMTRAIQM  240 (314)
Q Consensus       182 p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA-------~~~GLV~~vv~~~~-l~~~a~~~a~~l  240 (314)
                         |     |+++-       ..+|+.+++++.       ...|++|.++++++ ....++++...|
T Consensus       235 ---G-----P~vik-------~~~ge~~~~e~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~L  286 (555)
T 3u9r_B          235 ---G-----PPLVK-------AATGEVVSAEELGGADVHCKVSGVADHYAEDDDHALAIARRCVANL  286 (555)
T ss_dssp             ---C-----HHHHH-------HHHCCCCCHHHHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHTS
T ss_pred             ---c-----HHHHH-------HHhcCccChhhccchhhhhhccCceeEEeCCHHHHHHHHHHHHHhC
Confidence               1     22221       257899999888       78999999998753 334444444433

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.32  E-value=0.0041  Score=62.82  Aligned_cols=105  Identities=14%  Similarity=0.046  Sum_probs=71.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+--=..-++....-+.+..+++.+.+. .+.+|.|..+|     |+.+.+-... -..+.+-+..........|
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSG-----GARmqeg~~s-l~~~~~i~~~~~~~s~~iP  182 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGINDGA-----GARIQEGVVS-LGLYSRIFRNNILASGVIP  182 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SCCGGGTTHH-HHHHHHHHHHHHHTTTTSC
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEcCC-----CCCchhHHHH-HHHHHHHHHHHHHhcCCCc
Confidence            444444443456789999999999999999886 57888888744     5555432110 0011111222222245599


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCC-eEee
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEEN-VLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~-a~f~  136 (314)
                      .|+.|.|+|.||+......||++|+.++ +.++
T Consensus       183 ~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~  215 (548)
T 2bzr_A          183 QISLIMGAAAGGHVYSPALTDFVIMVDQTSQMF  215 (548)
T ss_dssp             EEEEECSEEESGGGHHHHHSSEEEEETTTCEEE
T ss_pred             EEEEecCCCchHHHHHHHhCCeEEeccCceeEE
Confidence            9999999999999988889999999997 7765

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.23  E-value=0.0016  Score=65.52  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=71.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+--=..-++....-+.+..+++.+.+. .+.+|.+..+     .|+.+.+-... -.....-+.......-..|
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~S-----GGaRmqeg~~s-l~~~~~i~~~~~~~s~~iP  165 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGINDS-----GGARIQEGALS-LEGYGAVFKMNVMASGVIP  165 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CSBCGGGTHHH-HHHHHHHHHHHHHHTTTSC
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCCChhHHHHH-HHHHHHHHHHHHHhCCCCc
Confidence            444444443356789999999999999999876 5788888874     45555432110 0001111111122255699


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCC-e-Eee
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEEN-V-LMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~-a-~f~  136 (314)
                      .|+.+.|+|.||+......||++|+.++ + .++
T Consensus       166 ~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~  199 (522)
T 1x0u_A          166 QITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMF  199 (522)
T ss_dssp             EEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEE
T ss_pred             EEEEEcCCCchHHHHHHhcCCeEEEecCCccEEE
Confidence            9999999999999999999999999998 7 654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.93  E-value=0.0078  Score=60.48  Aligned_cols=105  Identities=11%  Similarity=0.027  Sum_probs=69.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+.--+.-++.....+.+..+++.+.+. .+-+|.|.-+|++.     +.+-... -......+..........|
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dSgGAR-----~qeg~~~-l~g~~~~~~~~~~~s~~iP  172 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGINDSGGAR-----IQEGVDA-LAGYGEIFLRNTLASGVVP  172 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEECSBC-----GGGTHHH-HHHHHHHHHHHHHHTTTSC
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHc-CCCEEEEECCCCCC-----ccchhHH-HHHHHHHHHHHHHhCCCCC
Confidence            444444433356789999999999999988876 56778777644333     3321100 0001111111122256799


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCC-eEee
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEEN-VLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~-a~f~  136 (314)
                      +|+.|.|+|.|||......||++|+.++ +.++
T Consensus       173 ~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~  205 (527)
T 1vrg_A          173 QITVIAGPCAGGAVYSPALTDFIVMVDQTARMF  205 (527)
T ss_dssp             EEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCB
T ss_pred             EEEEEeCCCchHHHHHHHcCCeEEEecCceEEE
Confidence            9999999999999998889999999997 6643

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=96.85  E-value=0.031  Score=56.28  Aligned_cols=201  Identities=13%  Similarity=0.118  Sum_probs=126.3

Q ss_pred             EEEeCCEEEEEEcCCCCCC-------------CCCHHHHHHHHHHHHHhh-hCCCccEEEEEcCCCCcc-ccCCcccccC
Q psy9494          19 TKKILNITLISLNRPDKIN-------------AINLKTLDALQENIKRFE-DDTESPLAILYGQEGNFC-SGFDLHELDE   83 (314)
Q Consensus        19 ~~~~~~v~~itlnrp~~~N-------------al~~~~~~eL~~al~~~~-~d~~vr~vVltg~g~~F~-aG~Dl~~~~~   83 (314)
                      +++..+++.++...|...-             .....|..|+.+++..+. +++++...++...|..=- -..|-- +..
T Consensus       272 i~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~~~~-~~~  350 (556)
T 2w3p_A          272 IDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADAS-LMQ  350 (556)
T ss_dssp             EETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhhHHH-HHh
Confidence            3445679999998775322             223457788866666655 567888888877663200 000000 001


Q ss_pred             CCCchhHHHHHHH----Hhc--CCCCcEEEEE-cCccccc-cccccccCcEEEEeC-------CeEeecccccccccccc
Q psy9494          84 NPDTKLFDDFREF----LQK--PAKKPIIAAI-TGYAVGQ-GLDLALWCDLRFVEE-------NVLMGFYNRRFVYLKDS  148 (314)
Q Consensus        84 ~~~~~~~~~~~~~----~~~--~~~kPvIAav-~G~a~Gg-G~~lalacD~~ia~~-------~a~f~~pe~~~G~~~~~  148 (314)
                      ..+.=...+...+    +.+  -...-++|.| .|.|+.| =++|+++||..++-+       -+.+.+.+.++|.    
T Consensus       351 ~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  426 (556)
T 2w3p_A          351 HKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL----  426 (556)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTT----
T ss_pred             ccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCc----
Confidence            1111112222233    322  3444577777 6888655 578999999999853       2567777888883    


Q ss_pred             ccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHH--HHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         149 LLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM--DMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       149 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~--~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                                                     .|...|-+.+-.|-.|..-..  --...|+++++++|.+.|||+...++
T Consensus       427 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (556)
T 2w3p_A          427 -------------------------------YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDD  475 (556)
T ss_dssp             -------------------------------SCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCT
T ss_pred             -------------------------------ccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCccc
Confidence                                           333334343333444432222  12345999999999999999988777


Q ss_pred             CchHHHHHHHHHHHHhCCHH-HHHHHHHHH
Q psy9494         227 GTAVGEAMTRAIQMSKLSQS-MLADRATVL  255 (314)
Q Consensus       227 ~~l~~~a~~~a~~la~~~~~-~~~~K~~~~  255 (314)
                      =+-.++.+-..++=++.+|. +--+...++
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (556)
T 2w3p_A          476 IDWADEIRIALEERAAMSPDALTGLEANLR  505 (556)
T ss_dssp             TTHHHHHHHHHHHHHHSCHHHHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhccCcchhccchhhcc
Confidence            67889999999999999999 887777765

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.63  E-value=0.0053  Score=61.66  Aligned_cols=104  Identities=18%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CC
Q psy9494          25 ITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PA  101 (314)
Q Consensus        25 v~~itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~  101 (314)
                      |+.+. |++. ..-+++.+......+.++.+.+. .+-+|.|.-.+++. .|.+-..-.      ......+.+..  ..
T Consensus       327 V~via-~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G~~-~G~~~E~~G------~~~~~Ak~l~~~~~~  397 (522)
T 1x0u_A          327 VGIVA-NNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPGYV-PGTDQEYKG------IIRHGAKMLYAFAEA  397 (522)
T ss_dssp             EEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECCBC-CSHHHHHTT------HHHHHHHHHHHHHHC
T ss_pred             EEEEE-ECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCCCC-CchHHHHHH------HHHHHHHHHHHHHhC
Confidence            44443 4443 33589999999999999988764 68888888654332 221111000      11112222222  68


Q ss_pred             CCcEEEEEcCcccccccccccc----CcEEEEeCCeEeec
Q psy9494         102 KKPIIAAITGYAVGQGLDLALW----CDLRFVEENVLMGF  137 (314)
Q Consensus       102 ~kPvIAav~G~a~GgG~~lala----cD~~ia~~~a~f~~  137 (314)
                      ..|+|+.|-|.|.|||+.....    +|+++|.++|.+++
T Consensus       398 ~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v  437 (522)
T 1x0u_A          398 TVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAV  437 (522)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEES
T ss_pred             CCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEe
Confidence            8999999999999997754444    99999999998763

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.30  E-value=0.039  Score=56.06  Aligned_cols=110  Identities=13%  Similarity=0.034  Sum_probs=71.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKK  103 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~k  103 (314)
                      |..+..+.--+.-++.....+.+..+++.+.+. .+-+|.|.-.|+++..  +=.+.... ......-+...... ....
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgGArl~--~qe~~~~~-l~~~g~if~~~~~ls~~~i  183 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSGVEFP--NQDKVYPN-RRGGGTPFFRNSELNQLGI  183 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCCBCGG--GHHHHSSS-TTSTTHHHHHHHHHHHTTC
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCcCcc--cccccccc-hhhHHHHHHHHHHHhcCCC
Confidence            444444444456788889999999999999876 4778888876655541  00011000 00001112222111 4679


Q ss_pred             cEEEEEcCccccccccccccCcEEEEeCCeEeecc
Q psy9494         104 PIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFY  138 (314)
Q Consensus       104 PvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~p  138 (314)
                      |+|+.|.|+|.|||...++++|++++.+++.+++.
T Consensus       184 P~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~a  218 (588)
T 3gf3_A          184 PVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVG  218 (588)
T ss_dssp             CEEEEECSEEETHHHHHHHSSSEEEEETTCEEESS
T ss_pred             CEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEec
Confidence            99999999999998766889999999999987754

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.23  E-value=0.033  Score=55.95  Aligned_cols=98  Identities=15%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEE
Q psy9494          31 NRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIA  107 (314)
Q Consensus        31 nrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIA  107 (314)
                      |+|. ..-.++++......+.++.+++ ..+-+|.|.-.++ |..|.+=....      ......+.+..  ....|+|+
T Consensus       337 ~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtpG-~~~G~~~E~~g------~~~~~A~~~~a~~~~~vP~is  408 (527)
T 1vrg_A          337 NQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDTPG-YLPGVAQEHGG------IIRHGAKLLYAYSEATVPKIT  408 (527)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECC-BCCCHHHHHTT------HHHHHHHHHHHHHHCCSCEEE
T ss_pred             EcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCCC-CcCchhhHHhH------HHHHHHHHHHHHhcCCCCEEE
Confidence            4443 2357999999999999988765 4677777765432 32222211100      11122222222  68899999


Q ss_pred             EEcCcccccccccccc----CcEEEEeCCeEee
Q psy9494         108 AITGYAVGQGLDLALW----CDLRFVEENVLMG  136 (314)
Q Consensus       108 av~G~a~GgG~~lala----cD~~ia~~~a~f~  136 (314)
                      .|-|.|.|||+.-...    +|+++|.+++.++
T Consensus       409 vI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~  441 (527)
T 1vrg_A          409 VILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA  441 (527)
T ss_dssp             EEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             EEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE
Confidence            9999999888754443    8999999988876

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.77  E-value=0.069  Score=53.59  Aligned_cols=98  Identities=17%  Similarity=0.193  Sum_probs=64.2

Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEE
Q psy9494          31 NRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIA  107 (314)
Q Consensus        31 nrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIA  107 (314)
                      |+|. ....++++......+.++.++. .++-+|.|.-..+ |..|.+-.+..      ......+.+..  ....|+|+
T Consensus       333 n~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDtpG-f~~G~~~E~~G------i~~~~A~~l~a~a~~~vP~it  404 (523)
T 1on3_A          333 NQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDVPG-FLPGVQQEYGG------IIRHGAKMLYAYSEATVPKIT  404 (523)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECC-BCCCHHHHHTT------HHHHHHHHHHHHHHCCSCEEE
T ss_pred             ecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCCC-cCcchHHHHhh------HHHHHHHHHHHHhcCCCCEEE
Confidence            4543 2347999999999999987765 4677777765442 33332221110      11122222221  78899999


Q ss_pred             EEcCcccccccccccc----CcEEEEeCCeEee
Q psy9494         108 AITGYAVGQGLDLALW----CDLRFVEENVLMG  136 (314)
Q Consensus       108 av~G~a~GgG~~lala----cD~~ia~~~a~f~  136 (314)
                      .|-|.+.|||+.-...    +|+++|.+++.++
T Consensus       405 vI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~  437 (523)
T 1on3_A          405 VVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA  437 (523)
T ss_dssp             EEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE
T ss_pred             EEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE
Confidence            9999999998765544    8999998888776

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=95.69  E-value=0.2  Score=50.94  Aligned_cols=159  Identities=8%  Similarity=0.055  Sum_probs=95.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCcc
Q psy9494          36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYA  113 (314)
Q Consensus        36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a  113 (314)
                      .-.++++......+.++.++. .++-+|.|.-..+ |..|.+-.+-.      ......+.+..  .+..|+|+.|-|.+
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtpG-f~~G~~~E~~G------i~~~gA~~~~a~a~a~vP~itvI~g~~  455 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDTTG-IDVGNDAEKAE------LLGLGQSLIYSIQTSHIPQFEITLRKG  455 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECCCE-ECCSHHHHHTT------HHHHHHHHHHHHHTCCCCEEEEECSEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecCCC-CCCcHHHHHHH------HHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            457999999999999986655 5788888876543 33333221100      11222222222  88999999999999


Q ss_pred             cccccccccc----C--cEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHH
Q psy9494         114 VGQGLDLALW----C--DLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTI  187 (314)
Q Consensus       114 ~GgG~~lala----c--D~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~  187 (314)
                      .|||+.....    +  |+++|.+++.++.                                          +.|.+.+.
T Consensus       456 ~Ggg~~am~~~~~~~~~d~~~a~p~A~~~V------------------------------------------m~pegaa~  493 (587)
T 1pix_A          456 TAAAHYVLGGPQGNDTNAFSIGTAATEIAV------------------------------------------MNGETAAT  493 (587)
T ss_dssp             ETTHHHHTTCTTCTTTEEEEEECTTCEEES------------------------------------------SCHHHHHH
T ss_pred             ccHHHHHhcCcccCcccceeeeccCCeEec------------------------------------------CCHHHHHH
Confidence            9888543332    5  9999999888761                                          33322222


Q ss_pred             HHHHHHhhHH---------HH---HHHHh-cCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         188 RRLGQMIGTS---------RT---MDMIS-LGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       188 ~~l~~~vG~~---------~a---~~lll-~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                      ..+.......         .+   .++.- .-+..++..|.+.|+||.|+++.+.........+.+...|
T Consensus       494 Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          494 AMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             HHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence            2221211110         00   01100 0124788999999999999998776666555555555444

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=95.02  E-value=0.038  Score=55.72  Aligned_cols=98  Identities=18%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEE
Q psy9494          31 NRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIA  107 (314)
Q Consensus        31 nrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIA  107 (314)
                      |+|. ..-+++++......+.++.+++ ..+-+|.|--.++ |..|.+-.+..      ..+.....+..  ....|+|+
T Consensus       354 n~~~~~~G~l~~~~a~Kaar~i~~a~~-~~iPlv~lvDt~G-f~~G~~~E~~G------i~~~ga~~l~a~~~~~VP~is  425 (548)
T 2bzr_A          354 NQPTHFAGCLDINASEKAARFVRTCDC-FNIPIVMLVDVPG-FLPGTDQEYNG------IIRRGAKLLYAYGEATVPKIT  425 (548)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECC-BCCCHHHHHTT------HHHHHHHHHHHHHHCCSCEEE
T ss_pred             ECCcccCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEeeccC-CCCChHHHHhh------HHHHHHHHHHHHhCCCCCEEE
Confidence            4443 3357999999999998888865 4677777765432 33333221110      11111122221  78899999


Q ss_pred             EEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494         108 AITGYAVGQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       108 av~G~a~GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      .|-|.|.|||+....    .+|+++|.+++.++
T Consensus       426 vI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~  458 (548)
T 2bzr_A          426 VITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA  458 (548)
T ss_dssp             EEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             EEeCCcchHHHHHhccccCCCCEEEEcCCCEEE
Confidence            999999998876543    39999999998876

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=94.69  E-value=0.11  Score=52.18  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCc
Q psy9494          28 ISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKP  104 (314)
Q Consensus        28 itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kP  104 (314)
                      |.=|+|. ..-+++++......+.++.+++. .+-+|.|.-.++ |..|.+-.+      ........+.+..  ....|
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E~------~gi~~~~Ak~l~a~a~a~vP  407 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQEH------DGIIRRGAKLIFAYAEATVP  407 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHHHH------TTHHHHHHHHHHHHHHCCSC
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCCC-CCccHHHHH------hhHHHHHHHHHHHHHhCCCC
Confidence            3335553 23579999999999999877764 578888776543 555444221      0111222222222  78999


Q ss_pred             EEEEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494         105 IIAAITGYAVGQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      +|+.|-|.+.|||+....    .+|+++|.+++.++
T Consensus       408 ~itvI~g~~~GGa~~am~~~~~~~d~~~awp~a~~~  443 (530)
T 3iav_A          408 LITVITRKAFGGAYVVMGSKHLGADLNLAWPTAQIA  443 (530)
T ss_dssp             EEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             EEEEEeCCcchHHHHHhcCCCCCCCEEEEcCCceEe
Confidence            999999999987764332    27999999998876

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=94.53  E-value=0.046  Score=56.90  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=31.9

Q ss_pred             CCCcEEEEEcCccccccccccccCcEEEEeCCeEe
Q psy9494         101 AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM  135 (314)
Q Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f  135 (314)
                      ...|+|+.|.|+|+|||..+...||++|+.+++.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~i  279 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPI  279 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCE
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceE
Confidence            46799999999999999999999999999998653

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.00  E-value=0.13  Score=51.61  Aligned_cols=101  Identities=17%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCc
Q psy9494          28 ISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKP  104 (314)
Q Consensus        28 itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kP  104 (314)
                      |.=|+|. ..-.++++......+.++.+++ ..+-+|.|.-..+ |..|.+-.+..      ......+.+..  ..+.|
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~-~~iPlv~lvDtpG-f~~G~~~E~~G------i~~~gAk~l~a~a~a~VP  413 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDA-FEIPLLTLIDVPG-FLPGTSQEYGG------VIKHGAKLLYAYGEATVP  413 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECS-BCCSHHHHHTT------HHHHHHHHHHHHHHCCSC
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhc-cCCCEEEEeCCCC-CCCCHHHHHhh------HHHHHHHHHHHHHhCCCC
Confidence            3335554 2257999999999998887765 4677887775542 33332221110      11122222222  78899


Q ss_pred             EEEEEcCcccccccccccc----CcEEEEeCCeEee
Q psy9494         105 IIAAITGYAVGQGLDLALW----CDLRFVEENVLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lala----cD~~ia~~~a~f~  136 (314)
                      +|+.|-|.+.|||+.....    +|+++|.+++.++
T Consensus       414 ~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~  449 (531)
T 3n6r_B          414 MVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA  449 (531)
T ss_dssp             EEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             EEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe
Confidence            9999999999988754443    9999999998876

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=93.80  E-value=0.83  Score=46.05  Aligned_cols=92  Identities=15%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~  114 (314)
                      -.++++......+.++.++.. .+-+|.|.-.++ |..|.+-.+-.      ......+.+..  ..+.|+|+.|-|.+.
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E~~G------i~~~gAk~~~a~~~a~vP~itvi~g~~~  437 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNITG-FMVGQKYEAGG------IAKHGAKLVTAVACARVPKFTVLIGGSF  437 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEECC-BCCSHHHHHTT------HHHHHHHHHHHHHHCCSCEEEEEEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCcC-CCCCHHHHHHH------HHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence            589999999999888888763 588888886553 33333221100      11112222222  789999999999998


Q ss_pred             cccccccc----cCcEEEEeCCeEee
Q psy9494         115 GQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       115 GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      |||..-..    .+|+++|.++|.++
T Consensus       438 Ggg~~am~~~~~~~d~~~a~p~A~i~  463 (555)
T 3u9r_B          438 GAGNYGMCGRAYDPRFLWMWPNARIG  463 (555)
T ss_dssp             TTHHHHTTCGGGCCSEEEECTTCEEE
T ss_pred             chhhHhhcCccCCCCeEEEcCCcEEE
Confidence            88754332    47999999988876

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=93.43  E-value=0.094  Score=54.96  Aligned_cols=36  Identities=19%  Similarity=0.087  Sum_probs=33.0

Q ss_pred             CCCcEEEEEcCccccccccccccCcEEEEeCCeEee
Q psy9494         101 AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG  136 (314)
Q Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~  136 (314)
                      ...|+|+.|.|.|.|||..++..||++|+.+++.++
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~  293 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHII  293 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEE
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEE
Confidence            469999999999999999999999999999987654

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=91.83  E-value=1.5  Score=44.54  Aligned_cols=155  Identities=9%  Similarity=-0.001  Sum_probs=93.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~  114 (314)
                      ..++++....-.+.++.++.. ++-+|.|.-.. .|..|.+-.+-      .......+.+..  .+++|+|+.|-|.+.
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDtp-Gf~~G~~aE~~------Gi~~~gAk~l~a~a~a~VP~itvI~g~~~  458 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDTT-GIDVGDEAEKA------ELLGLGQSLIYSIENSKLPSLEITIRKAS  458 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECCC-EECCSHHHHHT------THHHHHHHHHHHHHHHCSCEEEEESSEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecCC-CCCCCHHHHHH------HHHHHHHHHHHHHHhCCCCEEEEEcCCcc
Confidence            478999999999988888764 68888887654 34444332110      011122222222  789999999999998


Q ss_pred             ccccccccc----C--cEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHH
Q psy9494         115 GQGLDLALW----C--DLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIR  188 (314)
Q Consensus       115 GgG~~lala----c--D~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~  188 (314)
                      |||+..+..    .  |+++|.++|.++.                                          +.|.+.+..
T Consensus       459 Ggg~~am~~~~~~~~~~~~~awp~A~~sV------------------------------------------m~pEgaa~I  496 (588)
T 3gf3_A          459 AAAHYVLGGPQGNNTNVFSIGTGACEYYV------------------------------------------MPGETAANA  496 (588)
T ss_dssp             TTHHHHTTCTTCTTTEEEEEECTTCEEES------------------------------------------SCHHHHHHH
T ss_pred             HHHHHHhcccccCCccceEEECCCceEEe------------------------------------------CCHHHHHHH
Confidence            887643332    2  4888888887762                                          333333333


Q ss_pred             HHHHHhhH----------------HHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         189 RLGQMIGT----------------SRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       189 ~l~~~vG~----------------~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                      .+.+.+-.                ....++--   ..++--|.+.|+||.|+++.+.......+.+.....|
T Consensus       497 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~~~p  565 (588)
T 3gf3_A          497 MYSRKLVKAKKAGEDLQPIIGKMNDMIQMYTD---KSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNP  565 (588)
T ss_dssp             HHHHHHHHC-------CHHHHHHHHHHHHHHH---TTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC
T ss_pred             HhhhHHhhhhccccccchHHHHHHHHHHHHHH---hCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHHHcCC
Confidence            33222210                01111111   3578888999999999999876666655555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	4e-22
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	4e-16
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	1e-15
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-12
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	2e-10
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	1e-07
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-07
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	1e-05
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	6e-05
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	9e-05
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	1e-04
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	2e-04
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	0.003
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	0.004

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.4 bits (226), Expect = 4e-22
 Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 39/206 (18%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ LI LNRP  +NA+    ++ L + ++ FE+D      +L G E  F +G D+ E+  
Sbjct: 16  SVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQN 75

Query: 84  NPDTKLF-DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNR 140
                 +   F          KKP+IAA+ GYA+G G +LA+ CD+ +  E    G    
Sbjct: 76  RTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQ--- 132

Query: 141 RFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTM 200
                                P               L         +RL + +G S  M
Sbjct: 133 ---------------------PEIL------------LGTIPGAGGTQRLTRAVGKSLAM 159

Query: 201 DMISLGRHITAREALDWGLCNKMVNC 226
           +M+  G  I+A++A   GL +K+   
Sbjct: 160 EMVLTGDRISAQDAKQAGLVSKIFPV 185

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 74.4 bits (181), Expect = 4e-16
 Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 45/234 (19%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++ ++ LN P++ N ++ +   +L + +   E D      +L G+   F +G DL  L+ 
Sbjct: 8   HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67

Query: 84  NPDTKLFDDFREFLQKP--------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM 135
             +    +++R  L             KP +AA+ G AV  G  LAL CDL  ++E   +
Sbjct: 68  VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARL 127

Query: 136 GFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIG 195
           G+   +  +                                        +    L + +G
Sbjct: 128 GYTEVKIGF-------------------------------------VAALVSVILVRAVG 150

Query: 196 TSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
                D++  GR + AREA   GL N++   G A+ EA   A +++K + + L 
Sbjct: 151 EKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR 204

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.6 bits (179), Expect = 1e-15
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
           ++  + LNRP+K NA+N      L E  ++   D++    ++ G    F SG DL ++  
Sbjct: 13  HVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMAS 72

Query: 84  NPDTKLFDDFREFLQKP----------------AKKPIIAAITGYAVGQGLDLALWCDLR 127
           +      DD                          KP+IAAI G  +G G+DL   CD+R
Sbjct: 73  DILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIR 132

Query: 128 FVEENVLMGFYNRRFVY 144
           +  ++            
Sbjct: 133 YCTQDAFFQVKEVDVGL 149

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (149), Expect = 8e-12
 Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 19/215 (8%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
              +I L  PD +NA+  +    L E ++  + + +    I+      F SG D      
Sbjct: 14  PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKG--- 70

Query: 84  NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
                      +       K         +     ++ +        + ++         
Sbjct: 71  ---------IAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIG 121

Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
                   S  ++    +  +            +L + T   T   L    GT+ T + +
Sbjct: 122 L-------SAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECL 174

Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAI 238
              +        + G  +K  N  ++  EA    +
Sbjct: 175 MFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKV 209

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 23/123 (18%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLH----- 79
              ++ NRP+  NA    T+D L   +       +  + +L G   +   G         
Sbjct: 30  TVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGD 89

Query: 80  ------------ELDENPDTKLFDDFREFLQK------PAKKPIIAAITGYAVGQGLDLA 121
                         D      +    R  + +         K +I  + G+A G G  L 
Sbjct: 90  QRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLH 149

Query: 122 LWC 124
           + C
Sbjct: 150 VVC 152

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            +  I++  P   NA+++K +  + + + R E+D      ++ G E  FC+GF L E+  
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71

Query: 84  NPDTKLFDDFREFLQKP----------AKKPIIAAITGYAVGQGLDLALWCDLRFVEENV 133
           +       D                   K+P++AAI G A G GL ++L  D+    ++ 
Sbjct: 72  DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131

Query: 134 LMGFYNRRFVY 144
                      
Sbjct: 132 KFVCAWHTIGI 142

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 30/223 (13%)

Query: 25  ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDEN 84
           I ++ +NR    N+++   +  L + +   + D +    I+  +           +    
Sbjct: 16  IVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAK 75

Query: 85  PDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVY 144
             +                               ++  +        N +          
Sbjct: 76  MSSS------------------------------EVGPFVSKIRAVINDIANLPVPTIAA 105

Query: 145 LKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMIS 204
           +    L  G+ L      R     +    +   LAI       +RL + IG S   ++I 
Sbjct: 106 IDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIF 165

Query: 205 LGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSM 247
             R +  +EA   GL + ++        A  +A+ +++     
Sbjct: 166 SARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 208

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 31/226 (13%)

Query: 24  NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDE 83
            + L++++   K         D L         D E+ + IL G   +FC+  D    + 
Sbjct: 22  GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL 81

Query: 84  NPDTKLFDDFREFLQKPAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFV 143
                  +   E  +       I      AV   +  A    +     ++++   +  F 
Sbjct: 82  GTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPEIPVMS---DIVLAAESATFQ 138

Query: 144 YLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMI 203
                                       D       I   D        ++G++R    +
Sbjct: 139 ----------------------------DGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFL 170

Query: 204 SLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQSMLA 249
             G+ + AR ALD+G  N++++    +  A   A  +++       
Sbjct: 171 LTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR 216

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE 80
           IT I  NRP K NAIN +    +   +K    D +S + +L G    + SG DL  
Sbjct: 12 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTN 67

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDD 57
           + +I  N   K+NA++   +D L + +      
Sbjct: 13 KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP 46

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 24 NITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELD 82
           I  +  + + + +N  N  TL+ L++ +   + D      I+   +  F  G D+ E  
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFV 75

Query: 83 ENPDTKLFDDFREFLQ 98
          EN      +     L+
Sbjct: 76 ENFKLPDAELIAGNLE 91

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 7/36 (19%), Positives = 18/36 (50%)

Query: 24 NITLISLNRPDKINAINLKTLDALQENIKRFEDDTE 59
           + +I+L+ P+K N  +     ++++ + R   D  
Sbjct: 9  EVRVITLDHPNKHNPFSRTLETSVKDALARANADDS 44

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 5/33 (15%), Positives = 13/33 (39%)

Query: 25 ITLISLNRPDKINAINLKTLDALQENIKRFEDD 57
            ++   R  + NA+N + +  +   +     D
Sbjct: 13 TQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD 45

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHE 80
          +L IT     R +K+NA+       L    +  E        +L G+ G F +G     
Sbjct: 20 VLEITF----RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGL 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.75
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.72
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.64
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.63
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.53
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.47
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.43
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.4
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.37
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.3
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.19
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.89
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.83
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.66
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	95.2
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.1
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.78
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	93.57

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.6e-54  Score=391.25  Aligned_cols=244  Identities=27%  Similarity=0.380  Sum_probs=210.0

Q ss_pred             ccccEEEEEe---CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch-
Q psy9494          13 LVSSVCTKKI---LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK-   88 (314)
Q Consensus        13 ~~~~v~~~~~---~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   88 (314)
                      -|+.|.++++   ++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   81 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDC   81 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHH
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhhh
Confidence            3678999986   489999999999999999999999999999999999999999999999999999999886543221 


Q ss_pred             hHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccc
Q psy9494          89 LFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQL  166 (314)
Q Consensus        89 ~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~  166 (314)
                      ....+...+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                       
T Consensus        82 ~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G-----------------------  138 (260)
T d1mj3a_          82 YSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLG-----------------------  138 (260)
T ss_dssp             HHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGT-----------------------
T ss_pred             hHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccC-----------------------
Confidence            11112222222  89999999999999999999999999999999999999999999                       


Q ss_pred             cccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH
Q psy9494         167 KHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS  246 (314)
Q Consensus       167 ~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  246 (314)
                                   +.|++|++++|++++|.++|++++++|++++|+||+++|||+++++.+++.+.+.+++++++..+|.
T Consensus       139 -------------l~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~  205 (260)
T d1mj3a_         139 -------------TIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKI  205 (260)
T ss_dssp             -------------CCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHH
T ss_pred             -------------cCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhH
Confidence                         7778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         247 -MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       247 -~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                       ++.+|+.++.......++....+.......        ...+|+|||+|.|+++
T Consensus       206 a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~~~  260 (260)
T d1mj3a_         206 IVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKDH  260 (260)
T ss_dssp             HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCCC
Confidence             999999999887765554433322211111        1279999999999985

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=9e-52  Score=381.16  Aligned_cols=243  Identities=20%  Similarity=0.323  Sum_probs=211.2

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhH--
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLF--   90 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   90 (314)
                      ||+.|.++++++|++||||||++.|++|.+|+.+|.++++++++|+++++|||||.|++||+|+|++++.........  
T Consensus         1 my~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           1 MYEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            578999999999999999999999999999999999999999999999999999999999999999998654322111  


Q ss_pred             --H----HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccc
Q psy9494          91 --D----DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVP  162 (314)
Q Consensus        91 --~----~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~  162 (314)
                        .    .+...+.+  ++||||||+|||+|+|||++|+++||+||++++++|++||.++|                   
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g-------------------  141 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIG-------------------  141 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccc-------------------
Confidence              1    11222222  89999999999999999999999999999999999999999999                   


Q ss_pred             cccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHh
Q psy9494         163 RTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSK  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  242 (314)
                                       ++|..|+++++++++|..+|++++++|+.++|+||+++||||++++++++.+++.++|++|++
T Consensus       142 -----------------~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  204 (269)
T d1nzya_         142 -----------------IGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAA  204 (269)
T ss_dssp             -----------------CCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHH
T ss_pred             -----------------cccccccccccccccChhhhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhh
Confidence                             777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCCCC
Q psy9494         243 LSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAKNG  291 (314)
Q Consensus       243 ~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~~~  291 (314)
                      .||. ++.+|+.++.......++.+..+.......+        ..+|+|||+|+|..
T Consensus       205 ~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~  262 (269)
T d1nzya_         205 APTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ  262 (269)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCC
Confidence            9999 9999999998877665554433322211111        26999999999954

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-51  Score=379.17  Aligned_cols=239  Identities=22%  Similarity=0.328  Sum_probs=205.8

Q ss_pred             cccEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc-----
Q psy9494          14 VSSVCTKKILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT-----   87 (314)
Q Consensus        14 ~~~v~~~~~~~v~~itln-rp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-----   87 (314)
                      |++|.++++++|++|++| ||+++|++|.+|+.+|.++++.++.| ++++|||||.|++||+|+|++++......     
T Consensus         1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (258)
T d2fw2a1           1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA   79 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccch
Confidence            678999999999999997 79999999999999999999999987 57999999999999999999987532111     


Q ss_pred             --hhHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          88 --KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        88 --~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                        +....+.+++..  ++||||||+|||+|+|||++++++||+||++++++|++||+++|                    
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G--------------------  139 (258)
T d2fw2a1          80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFG--------------------  139 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHT--------------------
T ss_pred             hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeecccccc--------------------
Confidence              111222333332  89999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|++|+++++++++|..++++++++|++++|+||+++||||++++++++.+++.+++++|++.
T Consensus       140 ----------------l~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~  203 (258)
T d2fw2a1         140 ----------------QSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASY  203 (258)
T ss_dssp             ----------------CCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTS
T ss_pred             ----------------ccccccccccchhhcCccccchhhccCcccccccccccccccccccccccccccchhhhhhhhh
Confidence                            7778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCC
Q psy9494         244 SQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAK  289 (314)
Q Consensus       244 ~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~  289 (314)
                      ||. ++.+|+.++.......++.+..+.......        ...||+|||+|.|
T Consensus       204 ~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~f  258 (258)
T d2fw2a1         204 NAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF  258 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCCC
T ss_pred             hHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence            999 999999999877655555443322211111        1279999999998

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-52  Score=382.98  Aligned_cols=241  Identities=22%  Similarity=0.258  Sum_probs=202.8

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC--CCCccccCCcccccCCCCc--
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ--EGNFCSGFDLHELDENPDT--   87 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~--g~~F~aG~Dl~~~~~~~~~--   87 (314)
                      |.|++|.++++++|++||||||+++|+||.+|+.+|.++++++++ +++++|||+|.  |++||+|+||+++......  
T Consensus         1 M~~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~   79 (261)
T d1ef8a_           1 MSYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPL   79 (261)
T ss_dssp             CCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CTT
T ss_pred             CCCCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCcccc
Confidence            357889999999999999999999999999999999999999984 57999999986  5799999999998653322  


Q ss_pred             hhHHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccc
Q psy9494          88 KLFDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQ  165 (314)
Q Consensus        88 ~~~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~  165 (314)
                      ...+.+.+.+..  ++||||||+|||+|+|||++|+++||+||++++++|++||.++|                      
T Consensus        80 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~G----------------------  137 (261)
T d1ef8a_          80 SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLG----------------------  137 (261)
T ss_dssp             CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT----------------------
T ss_pred             ccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccc----------------------
Confidence            122223333333  89999999999999999999999999999999999999999999                      


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCH
Q psy9494         166 LKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQ  245 (314)
Q Consensus       166 ~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~  245 (314)
                                    ++|+.++++++++.+|..++++++++|+.++|+||+++||||++++++++.+++.+++++|++.||
T Consensus       138 --------------l~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~  203 (261)
T d1ef8a_         138 --------------VPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAP  203 (261)
T ss_dssp             --------------CCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCH
T ss_pred             --------------cccccccccccccccCccccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCc
Confidence                          777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHhhhhch---HHHHHHH----------HHHHHhhhHHHHHHhcCCCCCCCC
Q psy9494         246 S-MLADRATVLSECETC---REEWMSE----------RKHYIGISFELKFLQKKKKAKNGH  292 (314)
Q Consensus       246 ~-~~~~K~~~~~~~~~~---~~~~~~~----------~~~~~~~~~~~af~ekr~p~~~~~  292 (314)
                      . ++.+|+.++...+..   ......+          ++..++   ..||+|||+|.|+|+
T Consensus       204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Eg---i~AfleKR~P~f~G~  261 (261)
T d1ef8a_         204 LAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEG---MNAFLEKRKPNFVGH  261 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHH---HHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHH---HHHHhCCCCCcCCCC
Confidence            9 999999987654321   1111111          111122   269999999999996

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-51  Score=379.60  Aligned_cols=243  Identities=18%  Similarity=0.191  Sum_probs=207.4

Q ss_pred             HhhhccccEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc
Q psy9494           9 AMLRLVSSVCTKK-ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT   87 (314)
Q Consensus         9 ~~~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~   87 (314)
                      .|...|+.+.++. ++||++|+| ||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus         3 ~~~~~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~   81 (263)
T d1wz8a1           3 SLEARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRAS   81 (263)
T ss_dssp             HHHHHCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHC
T ss_pred             ccccCCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhccc
Confidence            4666788898886 678999999 89999999999999999999999999999999999999999999999987543211


Q ss_pred             -h-h---HHHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcc
Q psy9494          88 -K-L---FDDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALH  160 (314)
Q Consensus        88 -~-~---~~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~  160 (314)
                       + .   .....+.+..  ++||||||+|||+|+|||++++++||+|||+++++|++||.++|                 
T Consensus        82 ~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G-----------------  144 (263)
T d1wz8a1          82 HEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLG-----------------  144 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHT-----------------
T ss_pred             ccccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccc-----------------
Confidence             1 1   1122222222  89999999999999999999999999999999999999999999                 


Q ss_pred             cccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHH
Q psy9494         161 VPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQM  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~l  240 (314)
                                         +.|++|+++++++++|..+|++++++|++++|+||+++||||++++++++.+++.++|++|
T Consensus       145 -------------------l~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l  205 (263)
T d1wz8a1         145 -------------------VAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL  205 (263)
T ss_dssp             -------------------SCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHH
T ss_pred             -------------------cccccccccccccccccchhhhhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHh
Confidence                               7778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCC
Q psy9494         241 SKLSQS-MLADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAK  289 (314)
Q Consensus       241 a~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~  289 (314)
                      ++.||. ++.+|+.++.......+....+... ....+        .+||+|||+|.|
T Consensus       206 a~~~~~al~~~K~~l~~~~~~~~~~~~~e~~~-~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         206 AQGPKEALHHTKHALNHWYRSFLPHFELSLAL-EFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHH-HHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             hccHHHHHHHHHHHHHHHHhChHHHHHHHHHH-HHHHccCHHHHHHHHHHhCCCCCCC
Confidence            999999 9999999987665444443222211 11111        279999999998

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.3e-51  Score=369.31  Aligned_cols=235  Identities=23%  Similarity=0.295  Sum_probs=199.0

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc--hh----H
Q psy9494          17 VCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT--KL----F   90 (314)
Q Consensus        17 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~----~   90 (314)
                      |.++ +|+|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++......  ..    .
T Consensus         2 v~ie-~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~   80 (253)
T d1uiya_           2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHS   80 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             EEEe-eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchh
Confidence            3455 377999999999999999999999999999999999999999999999999999999887543221  11    1


Q ss_pred             HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccc
Q psy9494          91 DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKH  168 (314)
Q Consensus        91 ~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~  168 (314)
                      ......+..  ++||||||+|||+|+|||++|+++|||||++++++|++||.++|                         
T Consensus        81 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g-------------------------  135 (253)
T d1uiya_          81 LSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIG-------------------------  135 (253)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHT-------------------------
T ss_pred             hhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccc-------------------------
Confidence            112222222  89999999999999999999999999999999999999999999                         


Q ss_pred             cccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-H
Q psy9494         169 SLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-M  247 (314)
Q Consensus       169 ~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~  247 (314)
                                 ++| ++++++|++++|..+|++++++|++++|+||+++||||+|++++++.+.+.++++++++.|+. +
T Consensus       136 -----------~~~-~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~  203 (253)
T d1uiya_         136 -----------FVA-ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSL  203 (253)
T ss_dssp             -----------CCC-HHHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred             -----------ccc-ccchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHH
Confidence                       665 567889999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHhhhH--------HHHHHhcCCCCC
Q psy9494         248 LADRATVLSECETCREEWMSERKHYIGISF--------ELKFLQKKKKAK  289 (314)
Q Consensus       248 ~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~af~ekr~p~~  289 (314)
                      ..+|+.++.......++.+..+.......+        ..||+|||+|+|
T Consensus       204 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~f  253 (253)
T d1uiya_         204 RLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF  253 (253)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence            999999998776655544333222111111        269999999998

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-50  Score=370.93  Aligned_cols=235  Identities=23%  Similarity=0.331  Sum_probs=199.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchh---HHHHHHHH
Q psy9494          22 ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKL---FDDFREFL   97 (314)
Q Consensus        22 ~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~---~~~~~~~~   97 (314)
                      ++||++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++........   ...+...+
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~   92 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVI   92 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHH
Confidence            467999999999999999999999999999999999999999999987 57999999998876543321   12223333


Q ss_pred             hc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccccccccccccccc
Q psy9494          98 QK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLS  175 (314)
Q Consensus        98 ~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                                
T Consensus        93 ~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G--------------------------------  140 (266)
T d1hzda_          93 NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLA--------------------------------  140 (266)
T ss_dssp             HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGT--------------------------------
T ss_pred             HHHhcCCcccccccccccccccceeccccceeeecCCcEEeeccccee--------------------------------
Confidence            33  99999999999999999999999999999999999999999999                                


Q ss_pred             ccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCch----HHHHHHHHHHHHhCCHH-HHHH
Q psy9494         176 RDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTA----VGEAMTRAIQMSKLSQS-MLAD  250 (314)
Q Consensus       176 ~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l----~~~a~~~a~~la~~~~~-~~~~  250 (314)
                          +.|++|++++|++++|..+|++++++|+.++|+||+++||||+++|++++    .+.|.+++++++..||. ++.+
T Consensus       141 ----~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~~~  216 (266)
T d1hzda_         141 ----IIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVA  216 (266)
T ss_dssp             ----CCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHH
T ss_pred             ----ecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHHHHHH
Confidence                77789999999999999999999999999999999999999999998764    56666677888889999 9999


Q ss_pred             HHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCCC
Q psy9494         251 RATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNGH  292 (314)
Q Consensus       251 K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~~  292 (314)
                      |+.+++.......+.+..+.......        ...||+|||+|+|+|+
T Consensus       217 K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~Gk  266 (266)
T d1hzda_         217 KLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE  266 (266)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCCCC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            99999887655554443322221111        1269999999999996

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-48  Score=355.55  Aligned_cols=222  Identities=22%  Similarity=0.283  Sum_probs=194.7

Q ss_pred             ccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHH-
Q psy9494          13 LVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFD-   91 (314)
Q Consensus        13 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~-   91 (314)
                      .|++|.++++++|++||||||+++|++|.+|+.+|.++++.+++|+.+ +||++|.|++||+|+|++++.......... 
T Consensus         1 g~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (245)
T d2f6qa1           1 GFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK   79 (245)
T ss_dssp             ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred             CcceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence            378899999999999999999999999999999999999999999876 899999999999999999987654432111 


Q ss_pred             --H----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          92 --D----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        92 --~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                        .    +.+++..  ++||||||+|||+|+|||++++++||+|||+++++|++||.++|                    
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G--------------------  139 (245)
T d2f6qa1          80 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLG--------------------  139 (245)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGT--------------------
T ss_pred             cchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCC--------------------
Confidence              1    2223332  99999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|++|+++++++++|..+|++++++|+.++|+||+++||||+++|++++.+++.+++++|++.
T Consensus       140 ----------------~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  203 (245)
T d2f6qa1         140 ----------------QSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKL  203 (245)
T ss_dssp             ----------------CCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTS
T ss_pred             ----------------CCccccchhhcccccccchhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcC
Confidence                            7788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHhhhhchHHHHHHHHHH
Q psy9494         244 SQS-MLADRATVLSECETCREEWMSERKH  271 (314)
Q Consensus       244 ~~~-~~~~K~~~~~~~~~~~~~~~~~~~~  271 (314)
                      ||. ++.+|+.+++......++...++..
T Consensus       204 ~~~a~~~~K~~l~~~~~~~l~~~~~~e~~  232 (245)
T d2f6qa1         204 PPNALRISKEVIRKREREKLHAVNAEECN  232 (245)
T ss_dssp             CHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence            999 9999999998776665555555433

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-49  Score=366.07  Aligned_cols=243  Identities=22%  Similarity=0.320  Sum_probs=201.9

Q ss_pred             ccccEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc----
Q psy9494          13 LVSSVCTK-KILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT----   87 (314)
Q Consensus        13 ~~~~v~~~-~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~----   87 (314)
                      .|+++.++ .+++|++||||||+++|+||.+|+.+|.++++.+++|+++++|||||.|++||+|+|+.++......    
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            36788775 5889999999999999999999999999999999999999999999999999999999887532111    


Q ss_pred             hh------HHH----HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchh
Q psy9494          88 KL------FDD----FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVV  155 (314)
Q Consensus        88 ~~------~~~----~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~  155 (314)
                      ..      ...    +...+..  ++||||||+|||+|+|||++|+++|||||++++++|++||+++|            
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G------------  148 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVG------------  148 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGT------------
T ss_pred             cccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccc------------
Confidence            00      011    1122222  89999999999999999999999999999999999999999999            


Q ss_pred             hhhcccccccccccccccccccccCCCCchHHHHHHHHhhH-HHHHHHHhcCCCCCHHHHHHCCCceeeeCCCc-hHHHH
Q psy9494         156 LYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGT-SRTMDMISLGRHITAREALDWGLCNKMVNCGT-AVGEA  233 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~-~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~-l~~~a  233 (314)
                                              +.|++|+++++++++|. ..+++++++|+.++|+||+++||||+++++++ +.+++
T Consensus       149 ------------------------l~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~  204 (275)
T d1dcia_         149 ------------------------LAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAA  204 (275)
T ss_dssp             ------------------------SCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHH
T ss_pred             ------------------------cccccccccccccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcc
Confidence                                    77889999999999995 55679999999999999999999999999755 67788


Q ss_pred             HHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhh--------HHHHHHhcCCCCCCC
Q psy9494         234 MTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGIS--------FELKFLQKKKKAKNG  291 (314)
Q Consensus       234 ~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~af~ekr~p~~~~  291 (314)
                      .+++++|++.+|. ++.+|+.++.......++....+.......        ...||+|||+|+|..
T Consensus       205 ~~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~~  271 (275)
T d1dcia_         205 FALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSIT  271 (275)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCC
T ss_pred             cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999 999999998877655554443322211111        126999999999864

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.9e-49  Score=365.50  Aligned_cols=245  Identities=17%  Similarity=0.149  Sum_probs=193.5

Q ss_pred             hhccccEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcC-------CCCccccCCcccc
Q psy9494          11 LRLVSSVCTKK--ILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQ-------EGNFCSGFDLHEL   81 (314)
Q Consensus        11 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-------g~~F~aG~Dl~~~   81 (314)
                      ++.++.|.+++  +++|++||||||+++|+||.+|+.+|.++++++++|+++|+|||||.       |+.||+|.|++..
T Consensus        14 ~~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~   93 (297)
T d1q52a_          14 FDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIR   93 (297)
T ss_dssp             CTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----
T ss_pred             cCCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhh
Confidence            44556788876  58999999999999999999999999999999999999999999997       4567777888765


Q ss_pred             cCCCCch-------hH-------HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCC-eEeecccccccc
Q psy9494          82 DENPDTK-------LF-------DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEEN-VLMGFYNRRFVY  144 (314)
Q Consensus        82 ~~~~~~~-------~~-------~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~  144 (314)
                      .......       ..       ..+......  ++||||||+|||+|+|||++++++||+||++++ ++|++||+++| 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~G-  172 (297)
T d1q52a_          94 GRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVG-  172 (297)
T ss_dssp             ------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGT-
T ss_pred             cccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccc-
Confidence            4221100       00       011122222  799999999999999999999999999999875 57999999999 


Q ss_pred             ccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeee
Q psy9494         145 LKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMV  224 (314)
Q Consensus       145 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv  224 (314)
                                                         ++|+++++++|++++|.++|++++++|+.++|+||+++||||+++
T Consensus       173 -----------------------------------l~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv  217 (297)
T d1q52a_         173 -----------------------------------SFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVA  217 (297)
T ss_dssp             -----------------------------------CCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEE
T ss_pred             -----------------------------------cccccccccccccccCccceeeccccccccchHhhhhhccccccC
Confidence                                               777889999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHH--h-----hhHHHHHHhcCCCCCCC
Q psy9494         225 NCGTAVGEAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYI--G-----ISFELKFLQKKKKAKNG  291 (314)
Q Consensus       225 ~~~~l~~~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~af~ekr~p~~~~  291 (314)
                      +++++.+.+.++++++++.||. ++.+|+.++.......++...+.+...  .     .....||+|||+|+|+.
T Consensus       218 ~~~el~~~~~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~  292 (297)
T d1q52a_         218 EHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  292 (297)
T ss_dssp             CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred             chHHhhHHHHHHhhhhccCCHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999999 999999887654433332222221110  0     01126999999999953

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=6.5e-48  Score=348.41  Aligned_cols=214  Identities=22%  Similarity=0.327  Sum_probs=188.6

Q ss_pred             EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCC-CCccccCCcccccCCCCchhH----HH
Q psy9494          18 CTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQE-GNFCSGFDLHELDENPDTKLF----DD   92 (314)
Q Consensus        18 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~----~~   92 (314)
                      ..+.+|+|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|.|++++......+..    ..
T Consensus         3 ~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (230)
T d2a7ka1           3 FEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDR   82 (230)
T ss_dssp             EEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHH
T ss_pred             EEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhh
Confidence            4466899999999999999999999999999999999999999999999886 799999999998765443221    22


Q ss_pred             HHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccc
Q psy9494          93 FREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSL  170 (314)
Q Consensus        93 ~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~  170 (314)
                      +.+.+..  ++||||||+|||+|+|||++++++||+|||+++++|++||.++|                           
T Consensus        83 ~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G---------------------------  135 (230)
T d2a7ka1          83 VIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHG---------------------------  135 (230)
T ss_dssp             HHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGT---------------------------
T ss_pred             hhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhcccccc---------------------------
Confidence            2333333  99999999999999999999999999999999999999999999                           


Q ss_pred             cccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCCHH-HHH
Q psy9494         171 RDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLSQS-MLA  249 (314)
Q Consensus       171 ~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~-~~~  249 (314)
                               ++|++| +.+|++++|..+|++++++|++++|+||+++||||++++++++.+++.+++++|++.||. ++.
T Consensus       136 ---------~~p~~g-~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~  205 (230)
T d2a7ka1         136 ---------IGCSVG-AAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFIN  205 (230)
T ss_dssp             ---------CCCHHH-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ---------cccccc-ccccccccccccccccccccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                     776655 468999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHhhhhchHHHHHHH
Q psy9494         250 DRATVLSECETCREEWMSE  268 (314)
Q Consensus       250 ~K~~~~~~~~~~~~~~~~~  268 (314)
                      +|+.+++.....+++....
T Consensus       206 ~K~~l~~~~~~~l~~~~~~  224 (230)
T d2a7ka1         206 TKRAVNKPFIHLLEQTRDA  224 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHH
Confidence            9999988766555554433

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=8.4e-47  Score=345.02  Aligned_cols=224  Identities=17%  Similarity=0.185  Sum_probs=197.5

Q ss_pred             hHhhhccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc
Q psy9494           8 RAMLRLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT   87 (314)
Q Consensus         8 ~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~   87 (314)
                      +.+.+.|++|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus         6 ~~~~~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~   85 (249)
T d1szoa_           6 QEYSQKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPH   85 (249)
T ss_dssp             HHHTTSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHH
T ss_pred             hhHhCCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhccccc
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999998654332


Q ss_pred             hhH---HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEee-ccccccccccccccccchhhhhccc
Q psy9494          88 KLF---DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMG-FYNRRFVYLKDSLLSSGVVLYALHV  161 (314)
Q Consensus        88 ~~~---~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~-~pe~~~G~~~~~~~~~g~~~~~~~~  161 (314)
                      ...   ..+...+..  ++||||||+|||+|. ||++++++||+||++++++|. +||.++|                  
T Consensus        86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g------------------  146 (249)
T d1szoa_          86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSG------------------  146 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGT------------------
T ss_pred             chhhhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccc------------------
Confidence            221   122233333  899999999999885 577999999999999999995 7999999                  


Q ss_pred             ccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHH
Q psy9494         162 PRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMS  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  241 (314)
                                        +.|+.|+++++++++|+.++++++++|+.++|+||+++||||++++++++.+++.+++++|+
T Consensus       147 ------------------~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  208 (249)
T d1szoa_         147 ------------------IVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIA  208 (249)
T ss_dssp             ------------------CCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHH
T ss_pred             ------------------cccccccccccccccCccceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHH
Confidence                              77789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHH-HHHHHHHHHhhhhchHHHHHHH
Q psy9494         242 KLSQS-MLADRATVLSECETCREEWMSE  268 (314)
Q Consensus       242 ~~~~~-~~~~K~~~~~~~~~~~~~~~~~  268 (314)
                      +.||. ++.+|+.+++......+..+.+
T Consensus       209 ~~~~~a~~~~K~~l~~~~~~~~e~~l~~  236 (249)
T d1szoa_         209 EKPLLARRYARKVLTRQLRRVMEADLSL  236 (249)
T ss_dssp             TSCHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            99999 9999999988766555544443

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-46  Score=346.23  Aligned_cols=235  Identities=15%  Similarity=0.128  Sum_probs=191.8

Q ss_pred             hccccEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCc----
Q psy9494          12 RLVSSVCTKKILNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDT----   87 (314)
Q Consensus        12 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~----   87 (314)
                      +.++.|.++++|+|++||||||+++|++|.+|+.+|.++++++++|+++++|||+|+|++||+|+||+++......    
T Consensus         2 ~~~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~   81 (266)
T d1pjha_           2 RQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNK   81 (266)
T ss_dssp             CCBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------C
T ss_pred             CCCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhcccccccc
Confidence            3567899999999999999999999999999999999999999999999999999999999999999988643221    


Q ss_pred             ---hhHH-------HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeC-CeEeeccccccccccccccccch
Q psy9494          88 ---KLFD-------DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEE-NVLMGFYNRRFVYLKDSLLSSGV  154 (314)
Q Consensus        88 ---~~~~-------~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~-~a~f~~pe~~~G~~~~~~~~~g~  154 (314)
                         ...+       .....+..  ++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|           
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lG-----------  150 (266)
T d1pjha_          82 YPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLG-----------  150 (266)
T ss_dssp             CSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHT-----------
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccc-----------
Confidence               1111       11122222  89999999999999999999999999999974 578999999999           


Q ss_pred             hhhhcccccccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHH---
Q psy9494         155 VLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVG---  231 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~---  231 (314)
                                               +.|++|+++++++++|..+|++++++|+.++|+||+++||||+++++++...   
T Consensus       151 -------------------------l~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~  205 (266)
T d1pjha_         151 -------------------------LITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAF  205 (266)
T ss_dssp             -------------------------CCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHH
T ss_pred             -------------------------cccccccccccccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHH
Confidence                                     7778999999999999999999999999999999999999999998754432   


Q ss_pred             ---HHHHHHHHHHhCCHH-HHHHHHHHHhhhhchHHHHHHHHHHHHhhhHHHHHHhcCC
Q psy9494         232 ---EAMTRAIQMSKLSQS-MLADRATVLSECETCREEWMSERKHYIGISFELKFLQKKK  286 (314)
Q Consensus       232 ---~a~~~a~~la~~~~~-~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~ekr~  286 (314)
                         .+.++++++...++. +..+|+.++.............+..    ....+|+++++
T Consensus       206 ~~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~~~~~~e~~----~~~~~f~~~~p  260 (266)
T d1pjha_         206 NAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVN----ESLKYWVDGEP  260 (266)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHH----HHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHCCCC
Confidence               234567777778888 9999999887665544444333222    11247777753

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=337.56  Aligned_cols=213  Identities=19%  Similarity=0.269  Sum_probs=187.0

Q ss_pred             ccEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCC-CccccCCcccccCCCCchhH-
Q psy9494          15 SSVCTKKI--LNITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEG-NFCSGFDLHELDENPDTKLF-   90 (314)
Q Consensus        15 ~~v~~~~~--~~v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~-~F~aG~Dl~~~~~~~~~~~~-   90 (314)
                      +.|.++.+  +||++||||||+ .|++|.+|+.+|.++++.+++|+++++|||+|.|+ +||+|+|++++......... 
T Consensus         2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccc
Confidence            45666665  679999999996 69999999999999999999999999999999885 79999999998654332211 


Q ss_pred             --HHHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEe--eccccccccccccccccchhhhhcccccc
Q psy9494          91 --DDFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM--GFYNRRFVYLKDSLLSSGVVLYALHVPRT  164 (314)
Q Consensus        91 --~~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f--~~pe~~~G~~~~~~~~~g~~~~~~~~~~~  164 (314)
                        ..+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|  ++||+++|                     
T Consensus        81 ~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~G---------------------  139 (249)
T d1sg4a1          81 YWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLG---------------------  139 (249)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGT---------------------
T ss_pred             cchhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccc---------------------
Confidence              222233333  999999999999999999999999999999999976  78999999                     


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhCC
Q psy9494         165 QLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKLS  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~  244 (314)
                                     +.|.+|++++|++++|+.++++++++|++++|++|+++||||+++|++++.+++.++++++++.|
T Consensus       140 ---------------l~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~  204 (249)
T d1sg4a1         140 ---------------IIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP  204 (249)
T ss_dssp             ---------------CCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC
T ss_pred             ---------------cccccccccccccccccccccccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCC
Confidence                           77789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHhhhhchHHH
Q psy9494         245 QS-MLADRATVLSECETCREE  264 (314)
Q Consensus       245 ~~-~~~~K~~~~~~~~~~~~~  264 (314)
                      |. ++.+|+.++........+
T Consensus       205 ~~a~~~~K~~~~~~~~~~l~~  225 (249)
T d1sg4a1         205 DHARQLTKAMMRKATASRLVT  225 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCHHH
Confidence            99 999999998766544333

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2e-45  Score=346.09  Aligned_cols=195  Identities=21%  Similarity=0.299  Sum_probs=174.7

Q ss_pred             cccEEEEE-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCch---
Q psy9494          14 VSSVCTKK-ILNITLISLN-RPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTK---   88 (314)
Q Consensus        14 ~~~v~~~~-~~~v~~itln-rp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---   88 (314)
                      .+.+.+++ +++|++|+|| ||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++.......   
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   84 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAE   84 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHH
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchh
Confidence            45787876 6789999998 899999999999999999999999999999999999999999999999985432211   


Q ss_pred             hHH---HHHHHHhc--CCCCcEEEEEcCccccccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhccccc
Q psy9494          89 LFD---DFREFLQK--PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPR  163 (314)
Q Consensus        89 ~~~---~~~~~~~~--~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~  163 (314)
                      ...   .+.+.+..  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|                    
T Consensus        85 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~G--------------------  144 (310)
T d1wdka4          85 LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLG--------------------  144 (310)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGT--------------------
T ss_pred             hhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccC--------------------
Confidence            111   12223333  89999999999999999999999999999999999999999999                    


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHhhHHHHHHHHhcCCCCCHHHHHHCCCceeeeCCCchHHHHHHHHHHHHhC
Q psy9494         164 TQLKHSLRDNLSRDLAIPTCDVTIRRLGQMIGTSRTMDMISLGRHITAREALDWGLCNKMVNCGTAVGEAMTRAIQMSKL  243 (314)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~vG~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~  243 (314)
                                      +.|++|++++|++++|..++++++++|+.++|+||+++||||+++|++++.+.+.++++++++.
T Consensus       145 ----------------l~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~  208 (310)
T d1wdka4         145 ----------------IYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISG  208 (310)
T ss_dssp             ----------------CCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTT
T ss_pred             ----------------CCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhc
Confidence                            7778999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C
Q psy9494         244 S  244 (314)
Q Consensus       244 ~  244 (314)
                      +
T Consensus       209 ~  209 (310)
T d1wdka4         209 E  209 (310)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=8e-06  Score=68.88  Aligned_cols=90  Identities=13%  Similarity=0.069  Sum_probs=62.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCcc--EEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDDTESP--LAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .+|.++..++...+..++.++..+  .+.|.+.|+...+|..               +.+.++ .++.||...+.|.|++
T Consensus        24 ~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~---------------i~d~i~-~~~~~v~tv~~G~aaS   87 (183)
T d1yg6a1          24 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMS---------------IYDTMQ-FIKPDVSTICMGQAAS   87 (183)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHH---------------HHHHHH-HSSSCEEEEEEEEEET
T ss_pred             EECHHHHHHHHHHHHHhhhhccCCceEEEEeCCCccHHHHHH---------------HHHHHH-hCCCCEEEEEEEEeHH
Confidence            367888999888888776543222  2344455543333322               233333 6788999999999999


Q ss_pred             ccccccccCc--EEEEeCCeEeeccccccc
Q psy9494         116 QGLDLALWCD--LRFVEENVLMGFYNRRFV  143 (314)
Q Consensus       116 gG~~lalacD--~~ia~~~a~f~~pe~~~G  143 (314)
                      .|.-+.++||  -|++.++++|-+-+...|
T Consensus        88 ~a~~I~~ag~~~~R~~~~ns~~miH~~~~~  117 (183)
T d1yg6a1          88 MGAFLLTAGAKGKRFCLPNSRVMIHQPLGG  117 (183)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEEECCCEEE
T ss_pred             HHHHHHHcCCCCceeeCCCceEEecccccc
Confidence            9999999998  799999998876655544

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.72  E-value=9.1e-05  Score=65.68  Aligned_cols=105  Identities=14%  Similarity=0.087  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+---+.-+++....+.+..+.+.+.++ .+.+|.+.-     |+|..+.+-... -......+....+..-..|
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~-~lPlV~l~~-----sgG~r~~eg~~~-l~~~~~~~~~~~~ls~~vP  163 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-LSGYGKMFFANVKLSGVVP  163 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-HHHHHHHHHHHHHHTTTSC
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhc-CCCeEEEEe-----cCCCccccccee-ccccceehHHHHHHhccce
Confidence            444444544466789999999999999999876 466777764     334444331100 0001111222222244699


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCCeEee
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEENVLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~a~f~  136 (314)
                      +|+++.|+|+||+......||++|+.+++.++
T Consensus       164 ~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~  195 (253)
T d1on3a1         164 QIAIIAGPCAGGASYSPALTDFIIMTKKAHMF  195 (253)
T ss_dssp             EEEEEEEEEESGGGHHHHHSSEEEEETTCEEE
T ss_pred             EEEEEecCcccceeeccchhhheeccccceEE
Confidence            99999999999999999999999999988764

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=4e-05  Score=64.35  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHHHHHhhhCC---CccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494          38 AINLKTLDALQENIKRFEDDT---ESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV  114 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~  114 (314)
                      .+|.++..++...|..++.++   .+. +.|.+.|+..-+|.               .+.+.++ .++.||...+.|.|+
T Consensus        21 ~I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~GG~v~~gl---------------~i~d~i~-~~~~~v~t~~~G~aa   83 (179)
T d2cbya1          21 EVNDEIANRLCAQILLLAAEDASKDIS-LYINSPGGSISAGM---------------AIYDTMV-LAPCDIATYAMGMAA   83 (179)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECCBCHHHHH---------------HHHHHHH-HCSSCEEEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHhccCCCCeEE-EEeeCCCCCHHHHH---------------HHHHHHH-hhccceeeehhhhhh
Confidence            468889999888776655332   233 44455554444432               1223333 678999999999999


Q ss_pred             cccccccccCc--EEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHH
Q psy9494         115 GQGLDLALWCD--LRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQ  192 (314)
Q Consensus       115 GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~  192 (314)
                      +.|.-+++++|  .|++.++++|-+-+...|.       -|    ..  .  ...-..+     .+ ..-.......+.+
T Consensus        84 S~a~~il~ag~k~~R~~~~~s~~miH~~~~~~-------~G----~~--~--~i~~~~~-----~l-~~~~~~i~~i~a~  142 (179)
T d2cbya1          84 SMGEFLLAAGTKGKRYALPHARILMHQPLGGV-------TG----SA--A--DIAIQAE-----QF-AVIKKEMFRLNAE  142 (179)
T ss_dssp             THHHHHHHTSCTTCEEECTTCEEECCCC-------------------------CHHHHH-----HH-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCCCceEECCchHhhcCCCchhc-------CC----cc--H--HHHHHHH-----HH-HHHHHHHHHHHHH
Confidence            99999999999  7999999998765554441       00    00  0  0000000     00 0000001111222


Q ss_pred             Hhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         193 MIG--TSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       193 ~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      ..|  ...-.+.+-.-..++|+||+++||||+|+..
T Consensus       143 ~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         143 FTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            222  2233455666778999999999999999864

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.63  E-value=4.8e-05  Score=64.64  Aligned_cols=148  Identities=14%  Similarity=0.189  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHHhhh-CCC-ccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFED-DTE-SPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~-d~~-vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .+|.++.+.+...|..++. |++ -=-+.|.+.|+..-+|.-+               .+.++ .++.||...+.|.|++
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai---------------~d~i~-~~~~~v~t~~~G~aaS   95 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAI---------------VDTMN-FIKADVQTIVMGMAAS   95 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHH---------------HHHHH-HSSSCEEEEEEEEEET
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCceeeeecCCCCCHHHHHHH---------------HHHHH-hcCcceEEEeccccCC
Confidence            5688888888888877653 322 2234445666555444322               23333 6889999999999999


Q ss_pred             cccccccc--CcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCC------CchHH
Q psy9494         116 QGLDLALW--CDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPT------CDVTI  187 (314)
Q Consensus       116 gG~~lala--cD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~g~~  187 (314)
                      .|.-++++  +|-|++.+++++-+-+...|.       -|              ...    +.|...-.      ..-..
T Consensus        96 ~as~il~aG~~g~R~~~pns~~miHq~~~~~-------~G--------------~~~----~~~~~~~~~el~~~~~~i~  150 (192)
T d1y7oa1          96 MGTVIASSGAKGKRFMLPNAEYMIHQPMGGT-------GG--------------GTQ----QTDMAIAPEHLLKTRNTLE  150 (192)
T ss_dssp             HHHHHHTTSCTTCEEECTTCEEECCCCC---------------------------------------CHHHHHHHHHHHH
T ss_pred             ccceeeeecCCCccccchHHHHHhhcccccc-------cc--------------cch----hHHHHHHHHHHHHHHHHHH
Confidence            99888665  579999999998776665551       01              000    00000000      00011


Q ss_pred             HHHHHHhh--HHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         188 RRLGQMIG--TSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       188 ~~l~~~vG--~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      ..+.+..|  ..+..+.+-.-..++|+||+++||||+|+..
T Consensus       151 ~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         151 KILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            11222223  2334556666778999999999999999864

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=9.1e-05  Score=65.95  Aligned_cols=105  Identities=14%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHh-cCCCC
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQ-KPAKK  103 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~~k  103 (314)
                      |..+..|--=..-+++....+.+..+.+.+.++ .+-+|.++-     |.|+.+.+-... ............. .....
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~-----sgG~r~~e~~~s-l~~~~~~~~~~~~~~~~~v  170 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSA-----SGGARMQEALMS-LMQMAKTSAALAKMQERGL  170 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEE-----ESSBCGGGTHHH-HHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHc-CCCeEEEec-----CCCcccccccch-hhcchhHHHHHHHHHhCCC
Confidence            444555554466788999999999999988876 466777764     334444432100 0001111111111 15678


Q ss_pred             cEEEEEcCccccccc-cccccCcEEEEeCCeEee
Q psy9494         104 PIIAAITGYAVGQGL-DLALWCDLRFVEENVLMG  136 (314)
Q Consensus       104 PvIAav~G~a~GgG~-~lalacD~~ia~~~a~f~  136 (314)
                      |+|+++.|+|.||+. .+++++|++++.+.+.++
T Consensus       171 P~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~  204 (263)
T d2f9yb1         171 PYISVLTDPTMGGVSASFAMLGDLNIAEPKALIG  204 (263)
T ss_dssp             CEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEE
T ss_pred             ceEEEecCCcchHHHhhhhhcCceEeeecceeee
Confidence            999999999999875 588889999988887765

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.47  E-value=0.00082  Score=59.37  Aligned_cols=105  Identities=12%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..|..=+.-+++....+.+..+.+.+.++ .+-+|.|.-.|+     +.+.+-... .......+..........|
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~-~lPlI~l~dsgG-----arm~e~~~~-~~~~~~~~~~~~~~s~~vP  162 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSGG-----ARIQEGVAS-LGAYGEIFRRNTHASGVIP  162 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCS-----BCGGGTHHH-HHHHHHHHHHHHHTTTTSC
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHc-CCceEEEecCCC-----cccCccccc-ccchhHHHHHHHHHcCCCC
Confidence            555555555567889999999999999999886 477888886543     333321100 0001111112222255699


Q ss_pred             EEEEEcCccccccccccccCcEEEEeC-CeEee
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEE-NVLMG  136 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~-~a~f~  136 (314)
                      +|+++.|+|+||+......||++|+.+ .+.++
T Consensus       163 ~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~  195 (258)
T d1xnya1         163 QISLVVGPCAGGAVYSPAITDFTVMVDQTSHMF  195 (258)
T ss_dssp             EEEEECSEEEGGGGHHHHHSSEEEEETTTCEEE
T ss_pred             EEEEEcCCcChhHHHHHHhccchhhcccceEEE
Confidence            999999999999999888888887765 55543

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.43  E-value=0.00015  Score=61.43  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=62.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhC--CCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy9494          38 AINLKTLDALQENIKRFEDD--TESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAVG  115 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d--~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~G  115 (314)
                      .+|.++..++...|..++..  +++ -+.|-+.|+..-+|..               +.+.++ .++.||...+.|.|++
T Consensus        26 ~Id~~~~~~~i~~l~~l~~~~~~~I-~l~INS~GG~v~~g~a---------------i~d~i~-~~~~~v~tv~~G~aaS   88 (190)
T d2f6ia1          26 EINKKTADELISQLLYLDNINHNDI-KIYINSPGGSINEGLA---------------ILDIFN-YIKSDIQTISFGLVAS   88 (190)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCCSCE-EEEEEECCBCHHHHHH---------------HHHHHH-HSSSCEEEEEEEEECH
T ss_pred             eeCHHHHHHHHHHHHHHhccCCCCe-EEEEeCchhhhhHHHH---------------HHHHHH-hhCCceEEEEeccccc
Confidence            46888888888888877653  234 3444455533333322               233333 6788999999999999


Q ss_pred             ccccccccCc--EEEEeCCeEeeccccccc
Q psy9494         116 QGLDLALWCD--LRFVEENVLMGFYNRRFV  143 (314)
Q Consensus       116 gG~~lalacD--~~ia~~~a~f~~pe~~~G  143 (314)
                      .|.-+++++|  .|++.++++|-+.+...|
T Consensus        89 ~a~~i~~aG~kg~R~~~pns~imiH~~s~~  118 (190)
T d2f6ia1          89 MASVILASGKKGKRKSLPNCRIMIHQPLGN  118 (190)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEESSCTTCS
T ss_pred             hhHHHHHhCCCCccccCCCcEEEEcccccc
Confidence            9999999988  699999999877766555

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.40  E-value=8.3e-05  Score=63.28  Aligned_cols=89  Identities=13%  Similarity=0.068  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHHHHhhhC---CCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCcEEEEEcCccc
Q psy9494          38 AINLKTLDALQENIKRFEDD---TESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKPIIAAITGYAV  114 (314)
Q Consensus        38 al~~~~~~eL~~al~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~  114 (314)
                      -+|.++..++...+..++..   +++. +.|.+.|+...+|.-               +.+.++ .++.||...+.|.|+
T Consensus        34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~GG~v~~g~~---------------i~d~i~-~~~~~V~tv~~G~aa   96 (193)
T d1tg6a1          34 PIDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTAGLA---------------IYDTMQ-YILNPICTWCVGQAA   96 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECCBCHHHHHH---------------HHHHHH-HSCSCEEEEEEEEEE
T ss_pred             EEchHHHHHHHHHHHHhcccCCCcEEE-EEeecCcccHHHHHH---------------HHHHHH-hhcCceEEEEccchH
Confidence            46788888888777766643   2344 344566655544432               223333 677899999999999


Q ss_pred             cccccccccCc--EEEEeCCeEeeccccccc
Q psy9494         115 GQGLDLALWCD--LRFVEENVLMGFYNRRFV  143 (314)
Q Consensus       115 GgG~~lalacD--~~ia~~~a~f~~pe~~~G  143 (314)
                      +.|.-+.+++|  -|++.++|+|-+-+...|
T Consensus        97 S~a~~il~aG~~g~R~~~pns~~miHq~~~~  127 (193)
T d1tg6a1          97 SMGSLLLAAGTPGMRHSLPNSRIMIHQPSGG  127 (193)
T ss_dssp             THHHHHHHTSCTTCEEECTTCEEEECCCCCC
T ss_pred             HHHHHHhhcCccCccccCcccHHHhcCCccC
Confidence            99999999999  599999999876665544

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00096  Score=58.73  Aligned_cols=101  Identities=11%  Similarity=0.050  Sum_probs=65.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |+.+..|---..-+++......+..+.+.+.+. .+.+|.+...     +|..+.+-.... ......+.......-..|
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~-~~P~I~~~ds-----gG~r~~e~~~~l-~~~~~~~~~~~~~s~~iP  160 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGINDS-----GGARIQEGVDAL-AGYGEIFLRNTLASGVVP  160 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE-----CSBCGGGTHHHH-HHHHHHHHHHHHHTTTSC
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCcccccccccc-ccchHHHHHHHHHCCCCC
Confidence            444444444466788888889999988888876 4667777653     344443311000 001111111111156799


Q ss_pred             EEEEEcCccccccccccccCcEEEEeCC
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEEN  132 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~~  132 (314)
                      +|++|.|+|+||+......||++|+.+.
T Consensus       161 ~I~vv~G~~~gG~a~~~~~~d~~im~~~  188 (251)
T d1vrga1         161 QITVIAGPCAGGAVYSPALTDFIVMVDQ  188 (251)
T ss_dssp             EEEEEEEEEBGGGGHHHHHSSEEEEETT
T ss_pred             EEEEEccCccccceehhhhCceEEEEcc
Confidence            9999999999999999999999998754

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=0.0011  Score=58.54  Aligned_cols=104  Identities=14%  Similarity=0.062  Sum_probs=68.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhcCCCCc
Q psy9494          25 ITLISLNRPDKINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQKPAKKP  104 (314)
Q Consensus        25 v~~itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~kP  104 (314)
                      |..+..+-.-+.-+++....+.+..+.+.+.++ .+.+|.+.-.|     |..+.+-... ......-+..........|
T Consensus        91 v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~-~lP~I~l~dsg-----Gar~~eg~~~-~~~~~~~~~~~~~~~~~vP  163 (258)
T d2a7sa1          91 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGINDGA-----GARIQEGVVS-LGLYSRIFRNNILASGVIP  163 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGCTHH-HHHHHHHHHHHHHHTTTSC
T ss_pred             EEEecccceEeCCccchhhhhHHHHHHHHHHhc-CCceEEEeccC-----Cccccccccc-ccchhhHHHHHHHHcCCCC
Confidence            555555555567789999999999999999887 47777776533     4444321100 0000111111112266799


Q ss_pred             EEEEEcCccccccccccccCcEEEEeC-CeEe
Q psy9494         105 IIAAITGYAVGQGLDLALWCDLRFVEE-NVLM  135 (314)
Q Consensus       105 vIAav~G~a~GgG~~lalacD~~ia~~-~a~f  135 (314)
                      +|++|.|+|.||+......||++|+.+ .+.+
T Consensus       164 ~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i  195 (258)
T d2a7sa1         164 QISLIMGAAAGGHVYSPALTDFVIMVDQTSQM  195 (258)
T ss_dssp             EEEEECSCCBSGGGHHHHHSSEEEEEBTTBBC
T ss_pred             EEEEEecCcccHHHHHHHhccceEeecCceEE
Confidence            999999999999999988899988765 4554

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.19  E-value=0.0007  Score=60.83  Aligned_cols=99  Identities=13%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-CCCCcEEEEEcCcc
Q psy9494          35 KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-PAKKPIIAAITGYA  113 (314)
Q Consensus        35 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a  113 (314)
                      +.-+++....+.+..+++.+.+. .+-+|.|.-.++++..-.+ ..+.....  ....+....+. ...+|+|++|.|.|
T Consensus       116 ~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~ds~Ga~~~~~~-e~~~~~~~--~g~~~~~~a~ls~~~VP~Isvv~G~~  191 (287)
T d1pixa2         116 LAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNCSGVKFDEQE-KVYPNRRG--GGTPFFRNAELNQLGIPVIVGIYGTN  191 (287)
T ss_dssp             TTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECCCEECGGGHH-HHSSSTTS--TTHHHHHHHHHHHTTCCEEEEECSEE
T ss_pred             ccccchhhHHHHHHHHHHhhhhc-CCCEEEEecCCcccCCcch-hhccchhh--HHHHHHHHHHHhhcCCCeEEEecCCc
Confidence            55788899999999998888876 4777877764433321000 00111111  11112222111 46789999999999


Q ss_pred             ccccccccccCcEEEEeCCeEeec
Q psy9494         114 VGQGLDLALWCDLRFVEENVLMGF  137 (314)
Q Consensus       114 ~GgG~~lalacD~~ia~~~a~f~~  137 (314)
                      .|||...+++||++++.+++.+.+
T Consensus       192 ~gGgAy~~~~~~~i~~~~~a~i~~  215 (287)
T d1pixa2         192 PAGGGYHSISPTVIIAHEKANMAV  215 (287)
T ss_dssp             ETHHHHHHHSSSEEEEETTCEEES
T ss_pred             cccceeccccceeEEecCCeEEEE
Confidence            999988899999999999887764

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0015  Score=59.43  Aligned_cols=136  Identities=10%  Similarity=0.014  Sum_probs=89.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy9494          37 NAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYAV  114 (314)
Q Consensus        37 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a~  114 (314)
                      -+++++.+..-.+.++.++.- .+.+|-|--.+++++. .+-.+..      ........+..  .+++|+|+.|-|-+.
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG~~~g-~~~E~~g------~~~~~a~~~~~~~~~~vP~i~vv~g~g~  201 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYPG-VGAEERG------QSEAIARNLREMSRLGVPVVCTVIGEGG  201 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCCS-HHHHHTT------HHHHHHHHHHHHHTCSSCEEEEEEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHc-CcceEEEEecCcccCC-ccccccc------HHHHHHHHHHHHHhCCCceEEEEEhhhh
Confidence            457888998888888888875 5667766655544432 1111110      11222222222  899999999999999


Q ss_pred             cccccccccCcEEEEeCCeEeeccccccccccccccccchhhhhcccccccccccccccccccccCCCCchHHHHHHHHh
Q psy9494         115 GQGLDLALWCDLRFVEENVLMGFYNRRFVYLKDSLLSSGVVLYALHVPRTQLKHSLRDNLSRDLAIPTCDVTIRRLGQMI  194 (314)
Q Consensus       115 GgG~~lalacD~~ia~~~a~f~~pe~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~v  194 (314)
                      |||+.....+|.+.+-++|.++      .                                    +.|.+.++..+...-
T Consensus       202 ~gga~a~~~~d~v~m~~~a~~s------v------------------------------------ispEg~AsILwkd~~  239 (316)
T d2f9ya1         202 SGGALAIGVGDKVNMLQYSTYS------V------------------------------------ISPEGCASILWKSAD  239 (316)
T ss_dssp             HHHHHTTCCCSEEEECTTCEEE------S------------------------------------SCHHHHHHHHSSCST
T ss_pred             chhhhhhhhhhHHHHHhhhHHh------h------------------------------------ccchhhhhHhhccch
Confidence            9999988999999999999886      1                                    444444443332221


Q ss_pred             hHHHHHHHHhcCCCCCHHHHHHCCCceeeeCC
Q psy9494         195 GTSRTMDMISLGRHITAREALDWGLCNKMVNC  226 (314)
Q Consensus       195 G~~~a~~lll~G~~~sA~eA~~~GLV~~vv~~  226 (314)
                      -...|.+    ..++++++.++.|+||++++.
T Consensus       240 ~a~eaAe----alklta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         240 KAPLAAE----AMGIIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             THHHHHH----HHTCSHHHHHTTTSCSCCCCC
T ss_pred             hhcchHH----HHhhhhHHHHHcCchhhcccC
Confidence            1122222    235899999999999999963

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.045  Score=47.99  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             EEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcE
Q psy9494          29 SLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPI  105 (314)
Q Consensus        29 tlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPv  105 (314)
                      .-|+|. ...+++.+......+.++.++.. ++-.|.|.-.+ .|..|.+-..-.      ......+++..  .+..|.
T Consensus        72 ian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dtp-Gf~~G~~~E~~g------~~~~ga~~~~a~a~~~vP~  143 (264)
T d1vrga2          72 VANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDTP-GYLPGVAQEHGG------IIRHGAKLLYAYSEATVPK  143 (264)
T ss_dssp             EEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHHTT------HHHHHHHHHHHHHHCCSCE
T ss_pred             EeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeecc-cccccHHHHHHh------HHHHHHHHHHHHhcCCCCE
Confidence            345554 34579999999999988888765 68888877643 344443332110      11222223332  789999


Q ss_pred             EEEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494         106 IAAITGYAVGQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       106 IAav~G~a~GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      |..|-|.++|+|+....    .+|+++|.+++.++
T Consensus       144 i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~  178 (264)
T d1vrga2         144 ITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA  178 (264)
T ss_dssp             EEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             EEEEeCCcccHHhhhccCCccCCCeeeeccceeEE
Confidence            99999999998764332    59999998888876

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.66  E-value=0.021  Score=50.37  Aligned_cols=108  Identities=17%  Similarity=0.204  Sum_probs=69.6

Q ss_pred             eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc-
Q psy9494          22 ILNITLISLNRPDK-INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK-   99 (314)
Q Consensus        22 ~~~v~~itlnrp~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~-   99 (314)
                      +|.-.-|.-|+|.. ..+++.+..+...+.++.++.. ++-+|.|.-.+ .|..|.+-.+..      ......+++.. 
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dtp-Gf~~G~~~E~~g------~~~~ga~~~~a~  139 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP-GFLPGTDQEYNG------IIRRGAKLLYAY  139 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHHHC------HHHHHHHHHHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeechh-hhhhhccHHHhh------HHHHHHHHHHHH
Confidence            34333334456542 3589999999999888888765 68888887654 344443332111      11222223322 


Q ss_pred             -CCCCcEEEEEcCcccccccccc----ccCcEEEEeCCeEeec
Q psy9494         100 -PAKKPIIAAITGYAVGQGLDLA----LWCDLRFVEENVLMGF  137 (314)
Q Consensus       100 -~~~kPvIAav~G~a~GgG~~la----lacD~~ia~~~a~f~~  137 (314)
                       .+..|.|..|-|.++|+|+...    +.+|+++|.+++.++.
T Consensus       140 a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv  182 (271)
T d2a7sa2         140 GEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV  182 (271)
T ss_dssp             HHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee
Confidence             8899999999999999875533    3479999999988763

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.20  E-value=0.046  Score=47.90  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=68.0

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CC
Q psy9494          25 ITLISLNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PA  101 (314)
Q Consensus        25 v~~itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~  101 (314)
                      |+.| -|+|. ...+++.+......+.++.++.. ++-+|.|.-.++ |-.|.+-..-.      ......+++..  ++
T Consensus        67 vgvi-a~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~pG-f~~G~~~E~~g------~~~~ga~~~~a~a~~  137 (263)
T d1xnya2          67 VGIV-ANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQEHDG------IIRRGAKLIFAYAEA  137 (263)
T ss_dssp             EEEE-EECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHHHHTT------HHHHHHHHHHHHHHC
T ss_pred             EEEE-ecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecccc-cccchhHHHHh------HHHHHHHHHHHHHcc
Confidence            4433 45553 34689999999999988888875 588888876542 44443332111      11222223322  79


Q ss_pred             CCcEEEEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494         102 KKPIIAAITGYAVGQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       102 ~kPvIAav~G~a~GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      ..|.|..|-|.++|+|.....    ..|+++|.+++.++
T Consensus       138 ~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~g  176 (263)
T d1xnya2         138 TVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIA  176 (263)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             CCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhh
Confidence            999999999999998865533    46999999988876

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.10  E-value=0.11  Score=45.41  Aligned_cols=99  Identities=16%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             EcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEE
Q psy9494          30 LNRPD-KINAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPII  106 (314)
Q Consensus        30 lnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvI  106 (314)
                      =|+|. ...+++.+..+...+.++.++.. ++-+|.|.-.. .|..|.+-..-.      ......+++..  ++.+|.|
T Consensus        73 an~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~p-Gf~~G~~~E~~g------~i~~ga~~~~a~a~~~vP~i  144 (264)
T d1on3a2          73 ANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDVP-GFLPGVQQEYGG------IIRHGAKMLYAYSEATVPKI  144 (264)
T ss_dssp             EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHHTT------HHHHHHHHHHHHHHCCSCEE
T ss_pred             eccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEeccc-cccccHHHHHHH------HHHHHHHHHHHHHcCCCCEE
Confidence            35554 35689999999998888888774 68888887653 354544432211      11222223332  8999999


Q ss_pred             EEEcCccccccccccc----cCcEEEEeCCeEee
Q psy9494         107 AAITGYAVGQGLDLAL----WCDLRFVEENVLMG  136 (314)
Q Consensus       107 Aav~G~a~GgG~~lal----acD~~ia~~~a~f~  136 (314)
                      +.|-|.++|+|..-+.    ..|+++|.+++.++
T Consensus       145 tvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~  178 (264)
T d1on3a2         145 TVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA  178 (264)
T ss_dssp             EEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE
T ss_pred             EEEeccccCccccccccccCChhheeeHHhhHhh
Confidence            9999999998865443    46888888877765

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.017  Score=52.51  Aligned_cols=36  Identities=19%  Similarity=0.046  Sum_probs=33.0

Q ss_pred             CCCCcEEEEEcCccccccccccccCcEEEEeCCeEe
Q psy9494         100 PAKKPIIAAITGYAVGQGLDLALWCDLRFVEENVLM  135 (314)
Q Consensus       100 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f  135 (314)
                      .-..|+|++|.|.|+|+|..++..||++|+.+++.+
T Consensus       238 ~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i  273 (333)
T d1uyra1         238 YHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPI  273 (333)
T ss_dssp             HHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCE
T ss_pred             cCCCCEEEEEeCCccccceeecccccEEEEeCCceE
Confidence            456999999999999999999999999999998764

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=93.57  E-value=0.73  Score=40.62  Aligned_cols=78  Identities=10%  Similarity=0.079  Sum_probs=51.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCccEEEEEcCCCCccccCCcccccCCCCchhHHHHHHHHhc--CCCCcEEEEEcCcc
Q psy9494          36 INAINLKTLDALQENIKRFEDDTESPLAILYGQEGNFCSGFDLHELDENPDTKLFDDFREFLQK--PAKKPIIAAITGYA  113 (314)
Q Consensus        36 ~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~--~~~kPvIAav~G~a  113 (314)
                      .-+++.+......+.++.++.. .+-+|.|.-.+ .|-.|.+-..-      .......+++..  .+..|.|+.|-|.+
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~p-Gf~~g~~~E~~------g~~r~ga~~~~a~~~~~VP~isvi~r~~  167 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDTT-GIDVGNDAEKA------ELLGLGQSLIYSIQTSHIPQFEITLRKG  167 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECCC-EECCSHHHHHT------THHHHHHHHHHHHHTCCCCEEEEECSEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeCC-CcccchHHHhh------hHHHHHHHHHHHHHhhcceeEEEEeccc
Confidence            3578899999999999888875 57788776543 25444332210      011222222222  88899999999999


Q ss_pred             cccccccc
Q psy9494         114 VGQGLDLA  121 (314)
Q Consensus       114 ~GgG~~la  121 (314)
                      +|+|...+
T Consensus       168 ~G~a~~am  175 (299)
T d1pixa3         168 TAAAHYVL  175 (299)
T ss_dssp             ETTHHHHT
T ss_pred             cccccccc
Confidence            99986543